94 Conserved Domain Database models. CDD 1 {"type": "domain"}
1 Dust is a program that identifies low-complexity sequences (regions of the genome with a biased distribution of nucleotides, such as a repeat). The Dust module is widely used with BLAST to prevent 'sticky' regions from determining false hits. Low complexity (Dust) 1 \N
118 CATH/Gene3D families. Gene3D 1 {"type": "domain"}
5 Genes imported from the community GFF3. See the species 'About' page for more information. Genes 1 {"label_key": "[biotype]", "caption": "Genes", "colour_key": "[biotype]", "default": {"cytoview": "gene_label", "MultiBottom": "collapsed_label", "alignsliceviewbottom": "as_collapsed_label", "MultiTop": "gene_label", "contigviewbottom": "transcript_label", "contigviewtop": "gene_label"}, "name": "Genes", "key": "ensembl"}
121 \N GOA annotation 0 \N
9 GO term derived transitively from a UniProt record UniProt-derived GO term 0 \N
96 HAMAP families. HAMAP 1 {"type": "domain"}
97 PANTHER families. PANTHER 1 {"type": "domain"}
117 InterPro2GO mapping, defined by InterPro. InterPro2GO mapping 0 \N
107 Intrinsically disordered regions predicted by MobiDB lite. MobiDB lite 1 {"type": "feature"}
108 Coiled-coil regions predicted by Ncoils. Coiled-coils (Ncoils) 1 {"type": "feature"}
98 Protein domains and motifs from the Pfam database. Pfam 1 {"type": "domain"}
115 Protein domains and motifs from the PROSITE profiles database. PROSITE profiles 1 {"type": "domain"}
100 Protein domains and motifs from the PIR (Protein Information Resource) Superfamily database. PIRSF 1 {"type": "domain"}
101 Protein fingerprints (groups of conserved motifs) from the PRINTS database. Prints 1 {"type": "domain"}
3 Repeats detected using the MIPS Repeat Database (REdat) using RepeatMasker. Repeats: REdat 1 \N
4 Repeats identified by RepeatMasker, using the Repbase library of repeat profiles. Repeats: Repbase 1 \N
116 Protein domains and motifs from the PROSITE patterns database. PROSITE patterns 1 {"type": "domain"}
109 Low complexity peptide sequences identified by Seg. Low complexity (Seg) 1 {"type": "feature"}
103 Structure-Function Linkage Database families. SFLD 1 {"type": "domain"}
110 Signal peptide cleavage sites predicted by SignalP. Cleavage site (Signalp) 1 {"type": "feature"}
104 Protein domains and motifs from the SMART database. SMART 1 {"type": "domain"}
105 Protein domains and motifs from the SUPERFAMILY database. Superfamily 1 {"type": "domain"}
106 Protein domains and motifs from the TIGRFAM database. TIGRFAM 1 {"type": "domain"}
111 Transmembrane helices predicted by TMHMM. Transmembrane helices 1 {"type": "feature"}
2 Tandem Repeats Finder locates adjacent copies of a pattern of nucleotides. Tandem repeats (TRF) 1 \N
6 UniParc mapping based on sequence checksums UniParc cross-reference 0 \N
7 UniProt cross-reference derived transitively from a UniParc identifier UniParc-derived cross-reference 0 \N
8 Cross-reference derived transitively from a UniProt record UniProt-derived cross-reference 0 \N
10 Cross references to UniProt Swiss-Prot (reviewed) proteins, determined by alignment against the proteome with blastp. UniProt reviewed proteins 0 \N
11 Cross references to UniProt TrEMBL (unreviewed) proteins, determined by alignment against the proteome with blastp. UniProt unreviewed proteins 0 \N