151 Conserved Domain Database models. CDD 1 {"type": "domain"}
16 Density of coding genes, calculated by dividing the chromosome into 150 "bins" and counting the genes in each. (For very short chromosomes, e.g. MT, some genes contribute to multiple bins.) Coding genes (density) 1 \N
20 Dust is a program that identifies low-complexity sequences (regions of the genome with a biased distribution of nucleotides, such as a repeat). The Dust module is widely used with BLAST to prevent 'sticky' regions from determining false hits. Low complexity (Dust) 1 \N
1 Assembly gap feature annotated in ENA Assembly gap (ENA) 1 \N
175 CATH/Gene3D families. Gene3D 1 {"type": "domain"}
179 \N GOA annotation 0 \N
128 Gene encoding an enzyme annotated at the Plant Reactome. Plant Reactome 1 \N
14 Gene annotation by Genomic Tools for Sweetpotato (GT4SP) dated 2017-04-17. Genes (GT4SP) 1 {"label_key": "[biotype]", "caption": "Genes", "colour_key": "[biotype]", "default": {"cytoview": "gene_label", "MultiBottom": "collapsed_label", "alignsliceviewbottom": "as_collapsed_label", "MultiTop": "gene_label", "contigviewbottom": "transcript_label", "contigviewtop": "gene_label"}, "name": "Genes", "key": "ensembl"}
157 HAMAP families. HAMAP 1 {"type": "domain"}
152 PANTHER families. PANTHER 1 {"type": "domain"}
173 InterPro2GO mapping, defined by InterPro. InterPro2GO mapping 0 \N
18 Density of long non-coding RNA genes, calculated by dividing the chromosome into 150 "bins" and counting the genes in each. (For very short chromosomes, e.g. MT, some genes contribute to multiple bins.) Long non-coding genes (density) 1 \N
163 Intrinsically disordered regions predicted by MobiDB lite. MobiDB lite 1 {"type": "feature"}
164 Coiled-coil regions predicted by Ncoils. Coiled-coils (Ncoils) 1 {"type": "feature"}
15 Percentage of repetitive elements for top level sequences (such as chromosomes, scaffolds, etc.) Repeats (percent) 1 \N
2 Percentage of G/C bases in the sequence. GC content 1 \N
153 Protein domains and motifs from the Pfam database. Pfam 1 {"type": "domain"}
174 Protein domains and motifs from the PROSITE profiles database. PROSITE profiles 1 {"type": "domain"}
154 Protein domains and motifs from the PIR (Protein Information Resource) Superfamily database. PIRSF 1 {"type": "domain"}
162 Protein fingerprints (groups of conserved motifs) from the PRINTS database. Prints 1 {"type": "domain"}
17 Density of pseudogenes, calculated by dividing the chromosome into 150 "bins" and counting the genes in each. (For very short chromosomes, e.g. MT, some genes contribute to multiple bins.) Pseudogenes (density) 1 \N
171 Repeats detected using Red (REPeatDetector) Repeats: Red 1 \N
22 Repeats detected using the MIPS Repeat Database (REdat) using RepeatMasker. Repeats: REdat 1 \N
23 Repeats identified by RepeatMasker, using the Repbase library of repeat profiles. Repeats: Repbase 1 \N
176 Protein domains and motifs from the PROSITE patterns database. PROSITE patterns 1 {"type": "domain"}
169 Low complexity peptide sequences identified by Seg. Low complexity (Seg) 1 {"type": "feature"}
156 Structure-Function Linkage Database families. SFLD 1 {"type": "domain"}
19 Density of short non-coding RNA genes, calculated by dividing the chromosome into 150 "bins" and counting the genes in each. (For very short chromosomes, e.g. MT, some genes contribute to multiple bins.) Short non-coding genes (density) 1 \N
165 Signal peptide cleavage sites predicted by SignalP. Cleavage site (Signalp) 1 {"type": "feature"}
158 Protein domains and motifs from the SMART database. SMART 1 {"type": "domain"}
159 Protein domains and motifs from the SUPERFAMILY database. Superfamily 1 {"type": "domain"}
160 Protein domains and motifs from the TIGRFAM database. TIGRFAM 1 {"type": "domain"}
168 Transmembrane helices predicted by TMHMM. Transmembrane helices 1 {"type": "feature"}
21 Tandem Repeats Finder locates adjacent copies of a pattern of nucleotides. Tandem repeats (TRF) 1 \N