54 Conserved Domain Database models. CDD 1 {"type": "domain"}
29 Dust is a program that identifies low-complexity sequences (regions of the genome with a biased distribution of nucleotides, such as a repeat). The Dust module is widely used with BLAST to prevent 'sticky' regions from determining false hits. Low complexity (Dust) 1 \N
2 Protein coding genes annotated in ENA Genes 1 {"label_key": "[biotype]", "caption": "Genes", "colour_key": "[biotype]", "default": {"cytoview": "gene_label", "MultiBottom": "collapsed_label", "alignsliceviewbottom": "as_collapsed_label", "MultiTop": "gene_label", "contigviewbottom": "transcript_label", "contigviewtop": "gene_label"}, "name": "Genes", "key": "ensembl"}
1 Assembly gap feature annotated in ENA Assembly gap (ENA) 1 \N
16 mRNA feature annotated in ENA mRNA (ENA) 1 {"caption": "Genomic features", "key": "ena_features", "label_key": "[text_label] [display_label]", "multi_name": "Genomic features", "name": "Genomic features"}
76 CATH/Gene3D families. Gene3D 1 {"type": "domain"}
82 \N GOA annotation 0 \N
25 GO term derived transitively from a UniProt record UniProt-derived GO term 0 \N
53 HAMAP families. HAMAP 1 {"type": "domain"}
55 PANTHER families. PANTHER 1 {"type": "domain"}
79 InterPro2GO mapping, defined by InterPro. InterPro2GO mapping 0 \N
65 Intrinsically disordered regions predicted by MobiDB lite. MobiDB lite 1 {"type": "feature"}
66 Coiled-coil regions predicted by Ncoils. Coiled-coils (Ncoils) 1 {"type": "feature"}
67 Protein domains and motifs from the Pfam database. Pfam 1 {"type": "domain"}
77 Protein domains and motifs from the PROSITE profiles database. PROSITE profiles 1 {"type": "domain"}
57 Protein domains and motifs from the PIR (Protein Information Resource) Superfamily database. PIRSF 1 {"type": "domain"}
58 Protein fingerprints (groups of conserved motifs) from the PRINTS database. Prints 1 {"type": "domain"}
74 Repeats detected using Red (REPeatDetector) Repeats: Red 1 \N
28 Repeats detected using RepeatMasker to scan non-redundant elements from several plant libraries , including REdat, TREP and RepetDB among others. Repeats: nrplants 1 \N
30 Repeats identified by RepeatMasker, using the Repbase library of repeat profiles. Repeats: Repbase 1 \N
78 Protein domains and motifs from the PROSITE patterns database. PROSITE patterns 1 {"type": "domain"}
72 Low complexity peptide sequences identified by Seg. Low complexity (Seg) 1 {"type": "feature"}
60 Structure-Function Linkage Database families. SFLD 1 {"type": "domain"}
69 Signal peptide cleavage sites predicted by SignalP. Cleavage site (Signalp) 1 {"type": "feature"}
62 Protein domains and motifs from the SMART database. SMART 1 {"type": "domain"}
64 Protein domains and motifs from the SUPERFAMILY database. Superfamily 1 {"type": "domain"}
63 Protein domains and motifs from the TIGRFAM database. TIGRFAM 1 {"type": "domain"}
68 Transmembrane helices predicted by TMHMM. Transmembrane helices 1 {"type": "feature"}
31 Tandem Repeats Finder locates adjacent copies of a pattern of nucleotides. Tandem repeats (TRF) 1 \N
22 UniParc mapping based on sequence checksums UniParc cross-reference 0 \N
23 UniProt cross-reference derived transitively from a UniParc identifier UniParc-derived cross-reference 0 \N
24 Cross-reference derived transitively from a UniProt record UniProt-derived cross-reference 0 \N
26 Cross references to UniProt Swiss-Prot (reviewed) proteins, determined by alignment against the proteome with blastp. UniProt reviewed proteins 0 \N
27 Cross references to UniProt TrEMBL (unreviewed) proteins, determined by alignment against the proteome with blastp. UniProt unreviewed proteins 0 \N