874	<a href="https://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml">Conserved Domain Database</a> models.	CDD	1	{"type": "domain"}
3	Gene imported from <a href="http://merolae.biol.s.u-tokyo.ac.jp/">CMER</a>	CMER	1	{"label_key": "[biotype]", "caption": "Genes", "colour_key": "[biotype]", "default": {"cytoview": "gene_label", "MultiBottom": "collapsed_label", "alignsliceviewbottom": "as_collapsed_label", "MultiTop": "gene_label", "contigviewbottom": "transcript_label", "contigviewtop": "gene_label"}, "name": "Genes", "key": "ensembl"}
618	Covariance models from <a href='http://rfam.xfam.org'>Rfam</a> (release 12.2), aligned to the genome with 'cmscan' from the <a href='http://eddylab.org/infernal'>Infernal</a> suite of programs. Models are restricted to those observed in species that share a last common ancestor (LCA).	Rfam Models (LCA)	1	{"type": "rna"}
178	Density of coding genes, calculated by dividing the chromosome into 150 "bins" and counting the genes in each. (For very short chromosomes, e.g. MT, some genes contribute to multiple bins.)	Coding genes (density)	1	\N
620	Dust is a program that identifies low-complexity sequences (regions of the genome with a biased distribution of nucleotides, such as a repeat). The Dust module is widely used with BLAST to prevent 'sticky' regions from determining false hits.	Low complexity (Dust)	1	\N
900	<a href="http://www.cathdb.info/">CATH/Gene3D</a> families.	Gene3D	1	{"type": "domain"}
903	\N	GOA annotation	0	\N
654	GO term derived transitively from a UniProt record	UniProt-derived GO term	0	\N
413	The Gene Ontology XRef projection pipeline	GO projected xrefs	0	\N
661	Gene encoding an enzyme annotated at the <a rel="external" href="https://plantreactome.gramene.org">Plant Reactome</a>.	Plant Reactome	1	\N
878	<a href="http://hamap.expasy.org/">HAMAP</a> families.	HAMAP	1	{"type": "domain"}
877	<a href="http://www.pantherdb.org/">PANTHER</a> families.	PANTHER	1	{"type": "domain"}
899	InterPro2GO mapping, defined by InterPro.	InterPro2GO mapping	0	\N
213	Density of long non-coding RNA genes, calculated by dividing the chromosome into 150 "bins" and counting the genes in each. (For very short chromosomes, e.g. MT, some genes contribute to multiple bins.)	Long non-coding genes (density)	1	\N
626	RNA genes imported from <a href='http://www.mirbase.org/'>miRBase</a> .	RNA genes	1	{"label_key": "[biotype]", "caption": "Genes", "colour_key": "[biotype]", "default": {"cytoview": "gene_label", "MultiBottom": "collapsed_label", "alignsliceviewbottom": "as_collapsed_label", "MultiTop": "gene_label", "contigviewbottom": "transcript_label", "contigviewtop": "gene_label"}, "name": "Genes", "key": "ensembl"}
885	Intrinsically disordered regions predicted by <a href="http://protein.bio.unipd.it/mobidblite/">MobiDB lite</a>.	MobiDB lite	1	{"type": "feature"}
887	Coiled-coil regions predicted by <a rel="external" href="http://www.sciencemag.org/cgi/reprint/252/5009/1162">Ncoils</a>.	Coiled-coils (Ncoils)	1	{"type": "feature"}
179	Density of non-coding RNA genes, calculated by dividing the chromosome into 150 "bins" and counting the genes in each. (For very short chromosomes, e.g. MT, some genes contribute to multiple bins.)	Non-coding genes (density)	1	\N
155	Percentage of repetitive elements for top level sequences (such as chromosomes, scaffolds, etc.)	Repeats (percent)	1	\N
156	Percentage of G/C bases in the sequence.	GC content	1	\N
876	Protein domains and motifs from the <a rel="external" href="http://pfam.xfam.org">Pfam</a> database.	Pfam	1	{"type": "domain"}
898	Protein domains and motifs from the <a rel="external" href="http://prosite.expasy.org">PROSITE</a> profiles database.	PROSITE profiles	1	{"type": "domain"}
882	Protein domains and motifs from the <a rel="external" href="http://pir.georgetown.edu">PIR (Protein Information Resource)</a> Superfamily database.	PIRSF	1	{"type": "domain"}
880	Protein fingerprints (groups of conserved motifs) from the <a href="http://www.bioinf.manchester.ac.uk/dbbrowser/PRINTS/index.php">PRINTS</a> database.	Prints	1	{"type": "domain"}
180	Density of pseudogenes, calculated by dividing the chromosome into 150 "bins" and counting the genes in each. (For very short chromosomes, e.g. MT, some genes contribute to multiple bins.)	Pseudogenes (density)	1	\N
895	Repeats detected using <a href="https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-015-0654-5">Red (REPeatDetector)</a>	Repeats: Red	1	\N
622	Repeats detected using the <a href="http://mips.helmholtz-muenchen.de/plant/recat/">MIPS Repeat Database</a> (REdat) using <a rel="external" href="http://www.repeatmasker.org">RepeatMasker</a>.	Repeats: REdat	1	\N
623	Repeats identified by <a rel="external" href="http://www.repeatmasker.org">RepeatMasker</a>, using the <a rel="external" href="http://www.girinst.org/repbase/">Repbase</a> library of repeat profiles.	Repeats: Repbase	1	\N
627	RNA genes produced by filtering alignments of <a href='http://rfam.xfam.org'>Rfam</a> (release 12.2) covariance models.	RNA genes	1	{"label_key": "[biotype]", "caption": "Genes", "colour_key": "[biotype]", "default": {"cytoview": "gene_label", "MultiBottom": "collapsed_label", "alignsliceviewbottom": "as_collapsed_label", "MultiTop": "gene_label", "contigviewbottom": "transcript_label", "contigviewtop": "gene_label"}, "name": "Genes", "key": "ensembl"}
897	Protein domains and motifs from the <a rel="external" href="http://prosite.expasy.org">PROSITE</a> patterns database.	PROSITE patterns	1	{"type": "domain"}
890	Low complexity peptide sequences identified by <a rel="external" href="http://www.biology.wustl.edu/gcg/seg.html">Seg</a>.	Low complexity (Seg)	1	{"type": "feature"}
883	<a href="http://sfld.rbvi.ucsf.edu/">Structure-Function Linkage Database</a> families.	SFLD	1	{"type": "domain"}
212	Density of short non-coding RNA genes, calculated by dividing the chromosome into 150 "bins" and counting the genes in each. (For very short chromosomes, e.g. MT, some genes contribute to multiple bins.)	Short non-coding genes (density)	1	\N
889	Signal peptide cleavage sites predicted by <a rel="external" href="http://www.cbs.dtu.dk/services/SignalP">SignalP</a>.	Cleavage site (Signalp)	1	{"type": "feature"}
888	Protein domains and motifs from the <a rel="external" href="http://smart.embl-heidelberg.de">SMART</a> database.	SMART	1	{"type": "domain"}
177	Density of single nucleotide polymorphisms (SNPs), calculated by dividing the chromosome into 150 "bins" and counting the SNPs in each. (For very short chromosomes, e.g. MT, some SNPs contribute to multiple bins.)	SNP Density	1	\N
886	Protein domains and motifs from the <a rel="external" href="http://supfam.org/SUPERFAMILY">SUPERFAMILY</a> database.	Superfamily	1	{"type": "domain"}
884	Protein domains and motifs from the <a rel="external" href="http://www.jcvi.org/cgi-bin/tigrfams/index.cgi">TIGRFAM</a> database.	TIGRFAM	1	{"type": "domain"}
891	Transmembrane helices predicted by <a rel="external" href="http://www.cbs.dtu.dk/~krogh/TMHMM">TMHMM</a>.	Transmembrane helices	1	{"type": "feature"}
621	<a rel="external" href="https://tandem.bu.edu/trf/trf.html">Tandem Repeats Finder</a> locates adjacent copies of a pattern of nucleotides.	Tandem repeats (TRF)	1	\N
619	tRNA models predicted with <a href="http://lowelab.ucsc.edu/tRNAscan-SE">tRNAscan-SE</a> (release 1.3.1).	tRNA Models	1	{"type": "rna"}
628	RNA genes produced by filtering predictions from <a href='http://lowelab.ucsc.edu/tRNAscan-SE/'>tRNAscan-SE</a> v1.23.	RNA genes	1	{"label_key": "[biotype]", "caption": "Genes", "colour_key": "[biotype]", "default": {"cytoview": "gene_label", "MultiBottom": "collapsed_label", "alignsliceviewbottom": "as_collapsed_label", "MultiTop": "gene_label", "contigviewbottom": "transcript_label", "contigviewtop": "gene_label"}, "name": "Genes", "key": "ensembl"}
652	UniParc mapping based on sequence checksums	UniParc cross-reference	0	\N
133	Sequences from various databases are matched to Ensembl transcripts using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. These are external references, or 'Xrefs'.	DNA match	0	\N
134	match	Protein	0	\N
653	UniProt cross-reference derived transitively from a UniParc identifier	UniParc-derived cross-reference	0	\N
655	Cross-reference derived transitively from a UniProt record	UniProt-derived cross-reference	0	\N
658	Cross references to RefSeq nucleotide sequences, determined by alignment against the transcriptome with <em>blastx</em>.	RefSeq transcripts	0	\N
657	Cross references to RefSeq peptide sequences, determined by alignment against the proteome with <em>blastp</em>.	RefSeq peptides	0	\N
656	Cross references to UniProt Swiss-Prot (reviewed) proteins, determined by alignment against the proteome with <em>blastp</em>.	UniProt reviewed proteins	0	\N
659	Cross references to UniProt TrEMBL (unreviewed) proteins, determined by alignment against the proteome with <em>blastp</em>.	UniProt unreviewed proteins	0	\N