168 Conserved Domain Database models. CDD 1 {"type": "domain"}
38 Dust is a program that identifies low-complexity sequences (regions of the genome with a biased distribution of nucleotides, such as a repeat). The Dust module is widely used with BLAST to prevent 'sticky' regions from determining false hits. Low complexity (Dust) 1 \N
5 Protein coding genes annotated in ENA Genes 1 {"label_key": "[biotype]", "caption": "Genes", "colour_key": "[biotype]", "default": {"cytoview": "gene_label", "MultiBottom": "collapsed_label", "alignsliceviewbottom": "as_collapsed_label", "MultiTop": "gene_label", "contigviewbottom": "transcript_label", "contigviewtop": "gene_label"}, "name": "Genes", "key": "ensembl"}
1 Assembly gap feature annotated in ENA Assembly gap (ENA) 1 \N
19 mRNA feature annotated in ENA mRNA (ENA) 1 {"caption": "Genomic features", "key": "ena_features", "label_key": "[text_label] [display_label]", "multi_name": "Genomic features", "name": "Genomic features"}
192 CATH/Gene3D families. Gene3D 1 {"type": "domain"}
4 Cross-references attached by GenomeLoader to provide names GenomeLoader name cross-references 0 \N
3 Cross-references attached by GenomeLoader GenomeLoader cross-references 0 \N
197 \N GOA annotation 0 \N
35 GO term derived transitively from a UniProt record UniProt-derived GO term 0 \N
146 Gene encoding an enzyme annotated at the Plant Reactome. Plant Reactome 1 \N
171 HAMAP families. HAMAP 1 {"type": "domain"}
169 PANTHER families. PANTHER 1 {"type": "domain"}
194 InterPro2GO mapping, defined by InterPro. InterPro2GO mapping 0 \N
181 Intrinsically disordered regions predicted by MobiDB lite. MobiDB lite 1 {"type": "feature"}
186 Coiled-coil regions predicted by Ncoils. Coiled-coils (Ncoils) 1 {"type": "feature"}
175 Protein domains and motifs from the Pfam database. Pfam 1 {"type": "domain"}
191 Protein domains and motifs from the PROSITE profiles database. PROSITE profiles 1 {"type": "domain"}
180 Protein domains and motifs from the PIR (Protein Information Resource) Superfamily database. PIRSF 1 {"type": "domain"}
178 Protein fingerprints (groups of conserved motifs) from the PRINTS database. Prints 1 {"type": "domain"}
189 Repeats detected using Red (REPeatDetector) Repeats: Red 1 \N
40 Repeats detected using the MIPS Repeat Database (REdat) using RepeatMasker. Repeats: REdat 1 \N
41 Repeats identified by RepeatMasker, using the Repbase library of repeat profiles. Repeats: Repbase 1 \N
2 Non-coding RNA gene models based on alignment by of RFAM families to genomic sequences (alignments provided by RFAM) RFAM 1 {"caption": "RFAM Genes", "colour_key": "[biotype]", "default": {"MultiBottom": "collapsed_label", "MultiTop": "gene_label", "alignsliceviewbottom": "as_collapsed_label", "contigviewbottom": "transcript_label", "contigviewtop": "gene_label", "cytoview": "gene_label"}, "key": "rfam_genes", "label_key": "[biotype]", "multi_caption": "RFAM Genes", "name": "Non-coding RNA genes based on RFAM alignments"}
193 Protein domains and motifs from the PROSITE patterns database. PROSITE patterns 1 {"type": "domain"}
187 Low complexity peptide sequences identified by Seg. Low complexity (Seg) 1 {"type": "feature"}
174 Structure-Function Linkage Database families. SFLD 1 {"type": "domain"}
182 Signal peptide cleavage sites predicted by SignalP. Cleavage site (Signalp) 1 {"type": "feature"}
176 Protein domains and motifs from the SMART database. SMART 1 {"type": "domain"}
177 Protein domains and motifs from the SUPERFAMILY database. Superfamily 1 {"type": "domain"}
179 Protein domains and motifs from the TIGRFAM database. TIGRFAM 1 {"type": "domain"}
183 Transmembrane helices predicted by TMHMM. Transmembrane helices 1 {"type": "feature"}
39 Tandem Repeats Finder locates adjacent copies of a pattern of nucleotides. Tandem repeats (TRF) 1 \N
32 UniParc mapping based on sequence checksums UniParc cross-reference 0 \N
33 UniProt cross-reference derived transitively from a UniParc identifier UniParc-derived cross-reference 0 \N
34 Cross-reference derived transitively from a UniProt record UniProt-derived cross-reference 0 \N
36 Cross references to UniProt Swiss-Prot (reviewed) proteins, determined by alignment against the proteome with blastp. UniProt reviewed proteins 0 \N
37 Cross references to UniProt TrEMBL (unreviewed) proteins, determined by alignment against the proteome with blastp. UniProt unreviewed proteins 0 \N