=====Checking all inverse links==== [Checking inverses under class CCO] [Checking inverses under class Evidence] [Checking inverses under class People] Fixing Inverse omission: GLUTAREDOXIN-B is in caspi in slot CREDITED-FOR but caspi is not in GLUTAREDOXIN-B in slot CREDITS [Checking inverses under class Proteins] [Checking inverses under class Reactions] [Checking inverses under class All-Genes] [Checking inverses under class Transcription-Units] [Checking inverses under class Compounds] [Checking inverses under class Enzymatic-Reactions] [Checking inverses under class Regulation] ===== Checking and removing any values from PATHWAY-LINKS that point to nonexistent frames ==== Removing link from pwy HOMOCYSDEGR-PWY to nonexistent pwys (PWY-5130) Removing link from pwy HOMOCYSDEGR-PWY to nonexistent pwys (LCYSDEG-PWY PWY-5331) Removing link from pwy PWY-801 to nonexistent pwys (CYSTEINE-SYN2-PWY) Removing link from pwy ARGASEDEG-PWY to nonexistent pwys (GLUTAMATE-DEG1-PWY) Removing link from pwy PWY-4361 to nonexistent pwys (PWY-5389) Removing link from pwy GLUTORN-PWY to nonexistent pwys (ARGSYN-PWY) Removing link from pwy HOMOSERSYN-PWY to nonexistent pwys (HSERMETANA-PWY) Removing link from pwy PWY-5344 to nonexistent pwys (CYSTEINE-SYN2-PWY HSERMETANA-PWY) Removing link from pwy CITRULBIO-PWY to nonexistent pwys (GLUTAMINE-SYN2-PWY) Removing link from pwy PHESYN to nonexistent pwys ((TYRSYN . OUTGOING)) Removing link from pwy ARGORNPROST-PWY to nonexistent pwys (ORN-AMINOPENTANOATE-CAT-PWY) Removing link from pwy VALSYN-PWY to nonexistent pwys ((ALANINE-VALINESYN-PWY . OUTGOING)) Removing link from pwy PWY-981 to nonexistent pwys (PWY-5045) Removing link from pwy PWY-981 to nonexistent pwys (PWY-4203) Removing link from pwy PWY-981 to nonexistent pwys (PWY-4203) Removing link from pwy PWY-981 to nonexistent pwys (PWY-4203) Removing link from pwy ARO-PWY to nonexistent pwys (TYRSYN PWY-3462) Removing link from pwy PWY-842 to nonexistent pwys (PENTOSE-P-PWY) Removing link from pwy PWY-4841 to nonexistent pwys (PWY-4861) Removing link from pwy PWY-5337 to nonexistent pwys (PWY-5342) Removing link from pwy NAGLIPASYN-PWY to nonexistent pwys (KDOSYN-PWY) Removing link from pwy NAGLIPASYN-PWY to nonexistent pwys (UDPNAGSYN-PWY) Removing link from pwy PEPTIDOGLYCANSYN-PWY to nonexistent pwys (ALANINE-VALINESYN-PWY) Removing link from pwy PEPTIDOGLYCANSYN-PWY to nonexistent pwys (AMMASSIM-PWY) Removing link from pwy PEPTIDOGLYCANSYN-PWY to nonexistent pwys (ALANINE-VALINESYN-PWY) Removing link from pwy PEPTIDOGLYCANSYN-PWY to nonexistent pwys (UDPNAGSYN-PWY) Removing link from pwy PWY-1121 to nonexistent pwys ((PWY-5156 . INCOMING)) Removing link from pwy PWY-361 to nonexistent pwys (PWY-116) Removing link from pwy PWY-361 to nonexistent pwys ((PWY-5168 . OUTGOING)) Removing link from pwy PWY-361 to nonexistent pwys (PWY-83 PWY-5168) Removing link from pwy PWY-922 to nonexistent pwys (PWY-2681) Removing link from pwy PWY-922 to nonexistent pwys (PWY-2921 ERGOSTEROL-SYN-PWY) Removing link from pwy PYRIDNUCSYN-PWY to nonexistent pwys ((PWY-5381 . OUTGOING)) Removing link from pwy POLYISOPRENSYN-PWY to nonexistent pwys (UBISYN-PWY) Removing link from pwy POLYISOPRENSYN-PWY to nonexistent pwys (UBISYN-PWY) Removing link from pwy PWY-5123 to nonexistent pwys (PWY-5195 ERGOSTEROL-SYN-PWY PWY-2961 PWY-2921) Removing link from pwy PWY-5120 to nonexistent pwys (2.5.1.60-RXN RXN-3701) Removing link from pwy PWY-5121 to nonexistent pwys (PWY-5416 PWY-2981) Removing link from pwy HEME-BIOSYNTHESIS-II to nonexistent pwys (PWY-5189) Removing link from pwy PWY-1422 to nonexistent pwys (PWY-5048) Removing link from pwy PWY-5188 to nonexistent pwys (PWY-5196 PWY-5194 HEMESYN2-PWY) Removing link from pwy RIBOSYN2-PWY to nonexistent pwys (PWY-5198) Removing link from pwy P381-PWY to nonexistent pwys ((PWY-5443 . INCOMING)) Removing link from pwy PANTO-PWY to nonexistent pwys (PWY-5155) Removing link from pwy THISYN-PWY to nonexistent pwys (TYRSYN) Removing link from pwy PWY-695 to nonexistent pwys (PWY-5272) Removing link from pwy PWY-5025 to nonexistent pwys (PWY-581) Removing link from pwy PWY-2582 to nonexistent pwys (PWY-699) Removing link from pwy PWY-2881 to nonexistent pwys (PWY-2681) Removing link from pwy PWY-2901 to nonexistent pwys (PWY-2681) Removing link from pwy PWY-2901 to nonexistent pwys ((PWY-2681 . INCOMING)) Removing link from pwy PWY-2901 to nonexistent pwys (PWY-2681) Removing link from pwy PWY-2902 to nonexistent pwys (PWY-2681) Removing link from pwy KDO-LIPASYN-PWY to nonexistent pwys (LIPA-CORESYN-PWY) Removing link from pwy KDO-LIPASYN-PWY to nonexistent pwys (KDOSYN-PWY) Removing link from pwy PWY-5143 to nonexistent pwys (PWY-5129) Removing link from pwy PWY-3385 to nonexistent pwys (PWY-3542) Removing link from pwy PWY-2541 to nonexistent pwys (PWY-5377 PWY-112 PWY-5203) Removing link from pwy PWY-2541 to nonexistent pwys (PWY-699) Removing link from pwy DENOVOPURINE2-PWY to nonexistent pwys (PWY-5354) Removing link from pwy PWY-5043 to nonexistent pwys (PWY-5040 PWY-5039 PWY-5038 PWY-5037) Removing link from pwy PWY0-823 to nonexistent pwys (PUTDEG-PWY) Removing link from pwy PWY1F-FLAVSYN to nonexistent pwys (PWY-5118 PWY-5116 PWY-5094 PWY-5060) Removing link from pwy PWY1F-FLAVSYN to nonexistent pwys (PWY-5161) Removing link from pwy PWY1F-FLAVSYN to nonexistent pwys (PWY-5339 PWY-1901) Removing link from pwy PWY-5125 to nonexistent pwys (PWY-5286 PWY-5284) Removing link from pwy PWY-5125 to nonexistent pwys (PWY-5160) Removing link from pwy PWY-5125 to nonexistent pwys (PWY-5286 PWY-5268 PWY-5139) Removing link from pwy PWY-5153 to nonexistent pwys (PWY-5295 PWY-5286) Removing link from pwy PWY-3101 to nonexistent pwys (PWY-5321) Removing link from pwy PWY-3101 to nonexistent pwys (PWY-5348 PWY-5320) Removing link from pwy PWY-3101 to nonexistent pwys (PWY-5391) Removing link from pwy PWY-5059 to nonexistent pwys (PWY-5363) Removing link from pwy PWY-2002 to nonexistent pwys ((PWY-2343 . OUTGOING)) Removing link from pwy PWY-2083 to nonexistent pwys ((PWY-2861 . OUTGOING)) Removing link from pwy PWY-2083 to nonexistent pwys ((PWY-2345 . OUTGOING)) Removing link from pwy PWY-2321 to nonexistent pwys (PWY-2761) Removing link from pwy PWY-2321 to nonexistent pwys (PWY-2904 PWY-2464 PWY-2463) Removing link from pwy PWY-5152 to nonexistent pwys (PWY-5060) Removing link from pwy PWY1F-823 to nonexistent pwys (PWY-641) Removing link from pwy PWY1F-823 to nonexistent pwys (PWY-641) Removing link from pwy PWY1F-823 to nonexistent pwys (PWY-641) Removing link from pwy PWY1F-823 to nonexistent pwys (PWY-5060) Removing link from pwy PWY-5290 to nonexistent pwys (PWY-5301 PWY-5292) Removing link from pwy PWY-3581 to nonexistent pwys (PWY-5287 PWY-5270 PWY-3901) Removing link from pwy PWY-5318 to nonexistent pwys ((PWY-5317 . OUTGOING)) Removing link from pwy PWY-5318 to nonexistent pwys (PWY-5315) Removing link from pwy PWY-2181 to nonexistent pwys (PWY-5349) Removing link from pwy PWY-2181 to nonexistent pwys (PWY-3301) Removing link from pwy PWY1F-467 to nonexistent pwys (PWY-4201) Removing link from pwy PWY1F-467 to nonexistent pwys (PWY-3462) Removing link from pwy PWY-5176 to nonexistent pwys (PWY-5319) Removing link from pwy PWY-5397 to nonexistent pwys (CPD-8669) Removing link from pwy PWY-5397 to nonexistent pwys (PWY-5398) Removing link from pwy CAROTENOID-PWY to nonexistent pwys (PWY-5305) Removing link from pwy CAROTENOID-PWY to nonexistent pwys (PWY-5291 PWY-5288) Removing link from pwy CAROTENOID-PWY to nonexistent pwys ((PWY-5174 . OUTGOING)) Removing link from pwy CAROTENOID-PWY to nonexistent pwys (PWY-5174) Removing link from pwy PWY-5132 to nonexistent pwys (PWY-4381) Removing link from pwy PWY-5133 to nonexistent pwys (PWY-4381) Removing link from pwy PWY-5134 to nonexistent pwys (PWY-4381) Removing link from pwy PWY0-381 to nonexistent pwys ((TRANS-RXN-131 . INCOMING)) Removing link from pwy PWY-5386 to nonexistent pwys ((METHGLYSYN-CPLX . INCOMING)) Removing link from pwy 2PHENDEG-PWY to nonexistent pwys (PWY0-321) Removing link from pwy ARG-GLU-PWY to nonexistent pwys (OCTOPINEDEG-PWY NOPALINEDEG-PWY) Removing link from pwy ARGDEG-III-PWY to nonexistent pwys (PUTDEG-PWY) Removing link from pwy ARGDEG-V-PWY to nonexistent pwys (4AMINOBUTMETAB-PWY) Removing link from pwy AST-PWY to nonexistent pwys ((RXN-7561 . INCOMING)) Removing link from pwy CYSTEINE-DEG-PWY to nonexistent pwys (PWY-5326) Removing link from pwy GLUDEG-I-PWY to nonexistent pwys (PWY-0) Removing link from pwy ILEUDEG-PWY to nonexistent pwys (PROPIONMET-PWY) Removing link from pwy LEU-DEG2-PWY to nonexistent pwys (ACETOACETATE-DEG-PWY) Removing link from pwy METHIONINE-DEG1-PWY to nonexistent pwys (CYSTEINE-SYN2-PWY ADENOSYLHOMOCYSCAT-PWY) Removing link from pwy CITRULLINE-DEG-PWY to nonexistent pwys (ARGDEGRAD-PWY) Removing link from pwy PROUT-PWY to nonexistent pwys (GLUTAMATE-DEG1-PWY) Removing link from pwy THRDLCTCAT-PWY to nonexistent pwys (PWY-901) Removing link from pwy TYRFUMCAT-PWY to nonexistent pwys (ACETOACETATE-DEG-PWY) Removing link from pwy VALDEG-PWY to nonexistent pwys (PROPIONMET-PWY) Removing link from pwy M-CRESOL-DEGRADATION-PWY to nonexistent pwys (PROTOCATECHUATE-ORTHO-CLEAVAGE-PWY) Removing link from pwy PWY-741 to nonexistent pwys (PWY-5163) Removing link from pwy QUINATEDEG-PWY to nonexistent pwys (PROTOCATECHUATE-ORTHO-CLEAVAGE-PWY) Removing link from pwy PWY-81 to nonexistent pwys (CENTBENZCOA-PWY) Removing link from pwy TOLUENE-DEG-CATECHOL-PWY to nonexistent pwys (PWY-5430) Removing link from pwy PWY-1881 to nonexistent pwys (PWY-1722) Removing link from pwy P23-PWY to nonexistent pwys (PWY0-781) Removing link from pwy P23-PWY to nonexistent pwys (PWY0-1061) Removing link from pwy PWY-1622 to nonexistent pwys (GLYOXYLATE-BYPASS) Removing link from pwy PWY-1861 to nonexistent pwys (PWY-1701) Removing link from pwy P124-PWY to nonexistent pwys (PWY-5384) Removing link from pwy RIBOKIN-PWY to nonexistent pwys (PENTOSE-P-PWY) Removing link from pwy PWY-5074 to nonexistent pwys (ACETOACETATE-DEG-PWY) Removing link from pwy PWY-5177 to nonexistent pwys (CENTBENZCOA-PWY P321-PWY) Removing link from pwy PYRUVDEHYD-PWY to nonexistent pwys (PWY-4381) Removing link from pwy PWY-5098 to nonexistent pwys (PWY-5107) Removing link from pwy LIPASYN-PWY to nonexistent pwys (PWY-4541) Removing link from pwy PWY-5451 to nonexistent pwys (PWY-901) Removing link from pwy PWY-5340 to nonexistent pwys (PWY-1187 PWY-2821 PWY-601) Removing link from pwy PWY-5278 to nonexistent pwys (P223-PWY) Removing link from pwy PWY-5044 to nonexistent pwys (URDEGR-PWY) Removing link from pwy ANAEROFRUCAT-PWY to nonexistent pwys (P142-PWY) Removing link from pwy PROPFERM-PWY to nonexistent pwys (ALACAT2-PWY) Removing link from pwy GLYCOLYSIS to nonexistent pwys (TCA/GLYOX-BYPASS) Removing link from pwy GLYCOLYSIS to nonexistent pwys ((TRANS-RXN-157 . INCOMING) PENTOSE-P-PWY) Removing link from pwy METHANOGENESIS-PWY to nonexistent pwys (PWY-5254) Removing link from pwy METHANOGENESIS-PWY to nonexistent pwys (METHFORM-PWY) Removing link from pwy METHANOGENESIS-PWY to nonexistent pwys (P241-PWY) Removing link from pwy METHANOGENESIS-PWY to nonexistent pwys (P261-PWY) Removing link from pwy METHANOGENESIS-PWY to nonexistent pwys (PWY-5198) Removing link from pwy RIB-DRIBMET-PWY to nonexistent pwys ((PENTOSE-P-PWY . OUTGOING)) ===== Checking modified protein links to eliminate nonexistent frames ==== ===== Cross-referencing compounds and reactions ==== ==== Calculating sub and super pathways ==== ===== Finding missing sub pathway links ==== ==== Checking for missing sub pathway links ==== Warning:PWY-4001 is completely contained within ASPASN-PWY but is not listed in the SUB-PATHWAYS slot Warning:ASPARTATESYN-PWY is completely contained within ASPARAGINE-BIOSYNTHESIS but is not listed in the SUB-PATHWAYS slot Warning:ASPARTATESYN-PWY is completely contained within GLUTDEG-PWY but is not listed in the SUB-PATHWAYS slot Warning:HOMOCYSDEGR-PWY is completely contained within PWY-801 but is not listed in the SUB-PATHWAYS slot Warning:PWY-66 is completely contained within COLANSYN-PWY but is not listed in the SUB-PATHWAYS slot Warning:PWY1F-467 is completely contained within PWY-1121 but is not listed in the SUB-PATHWAYS slot Warning:PANTO-PWY is completely contained within PWY-4221 but is not listed in the SUB-PATHWAYS slot Warning:PWY-5123 is completely contained within POLYISOPRENSYN-PWY but is not listed in the SUB-PATHWAYS slot Warning:PWY-5122 is completely contained within PWY-5123 but is not listed in the SUB-PATHWAYS slot Warning:PWY-5123 is completely contained within PWY-5121 but is not listed in the SUB-PATHWAYS slot Warning:PWY-5120 is completely contained within PWY-5121 but is not listed in the SUB-PATHWAYS slot Warning:GLYSYN-PWY is completely contained within 1CMET2-PWY but is not listed in the SUB-PATHWAYS slot Warning:GLYSYN-PWY is completely contained within PWY-2201 but is not listed in the SUB-PATHWAYS slot Warning:GLYSYN-PWY is completely contained within PWY-3841 but is not listed in the SUB-PATHWAYS slot Warning:PWY-5034 is completely contained within PWY-5047 but is not listed in the SUB-PATHWAYS slot Warning:PWY0-662 is completely contained within P1-PWY but is not listed in the SUB-PATHWAYS slot Warning:ARGDEG-III-PWY is completely contained within POLYAMINSYN3-PWY but is not listed in the SUB-PATHWAYS slot Warning:PWY0-823 is completely contained within POLYAMSYN-PWY but is not listed in the SUB-PATHWAYS slot Warning:PWY-1141 is completely contained within CAROTENOID-PWY but is not listed in the SUB-PATHWAYS slot Warning:PWY-4001 is completely contained within ASPARAGINE-DEG1-PWY but is not listed in the SUB-PATHWAYS slot Warning:GLUTDEG-PWY is completely contained within GLUTAMINEFUM-PWY but is not listed in the SUB-PATHWAYS slot Warning:GLUTSYN-PWY is completely contained within GLUTAMINEFUM-PWY but is not listed in the SUB-PATHWAYS slot Warning:GLUGLNSYN-PWY is completely contained within PWY-3282 but is not listed in the SUB-PATHWAYS slot Warning:PWY-4341 is completely contained within PWY-3282 but is not listed in the SUB-PATHWAYS slot Warning:GLNSYN-PWY is completely contained within PWY-3282 but is not listed in the SUB-PATHWAYS slot Warning:GLNSYN-PWY is completely contained within PWY-381 but is not listed in the SUB-PATHWAYS slot Warning:PWY-5340 is completely contained within SO4ASSIM-PWY but is not listed in the SUB-PATHWAYS slot Warning:PWY-1881 is completely contained within P164-PWY but is not listed in the SUB-PATHWAYS slot Warning:OXIDATIVEPENT-PWY is completely contained within P122-PWY but is not listed in the SUB-PATHWAYS slot Warning:P21-PWY is completely contained within NONOXIPENT-PWY but is not listed in the SUB-PATHWAYS slot Warning:PWY-1881 is completely contained within ANARESPDON-PWY but is not listed in the SUB-PATHWAYS slot ==Done checking all the links== ==== Checking pathways for duplicate reactions in REACTION-LIST slot ==== == Done checking pathways for duplicate reactions == ==== Verifying replicon components and positions ==== == Done verifying replicon components == ===== Validating Gene Ontology (GO) Terms ===== Deleting obsolete term GO:0043037 - translation because it has no direct instances. Deleting obsolete term GO:0007582 - physiological process because it has no direct instances. Deleting obsolete term GO:0050875 - cellular physiological process because it has no direct instances.Parent GO:0070283 of GO:0004076 does not exist in SORGHUMBASE -- importing GO:0070283 [Copied 1 frames; overwrote 0 of them] [GO:0004076 parents become (GO:0016783 GO:0070283)] [GO:0009251 parents become (GO:0000272)] [GO:0034637 parents become (GO:0016051 GO:0044262)] [GO:0019290 parents become (GO:0009237 GO:0019184 GO:0051188)] [GO:0009698 COMMON-NAME changed from (phenylpropanoid metabolism) to (phenylpropanoid metabolic process)] [GO:0030258 parents become (GO:0044255)] [GO:0006073 COMMON-NAME changed from (glucan metabolic process) to (cellular glucan metabolic process)] Parent GO:0044042 of GO:0006073 does not exist in SORGHUMBASE -- importing GO:0044042 [Copied 1 frames; overwrote 0 of them] [GO:0006073 parents become (GO:0044042 GO:0044264)] [GO:0006040 parents become (GO:0005975)] Deleting term GO:0009055 - electron carrier activity because it has no subs, instances, or parts. Deleting term GO:0004076 - biotin synthase activity because it has no subs, instances, or parts. Deleting term GO:0004134 - 4-alpha-glucanotransferase activity because it has no subs, instances, or parts. Deleting term GO:0008748 - N-ethylmaleimide reductase activity because it has no subs, instances, or parts. Deleting term GO:0008709 - 7-alpha-hydroxysteroid dehydrogenase activity because it has no subs, instances, or parts. Deleting term GO:0019154 - glycolate dehydrogenase activity because it has no subs, instances, or parts. Deleting term GO:0008876 - quinoprotein glucose dehydrogenase activity because it has no subs, instances, or parts. Deleting term GO:0046553 - D-malate dehydrogenase (decarboxylating) activity because it has no subs, instances, or parts. Deleting term GO:0003862 - 3-isopropylmalate dehydrogenase activity because it has no subs, instances, or parts. Deleting term GO:0004033 - aldo-keto reductase activity because it has no subs, instances, or parts. Deleting term GO:0004764 - shikimate 5-dehydrogenase activity because it has no subs, instances, or parts. Deleting term GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity because it has no subs, instances, or parts. Deleting term GO:0050572 - L-idonate 5-dehydrogenase activity because it has no subs, instances, or parts. Deleting term GO:0003842 - 1-pyrroline-5-carboxylate dehydrogenase activity because it has no subs, instances, or parts. Deleting term GO:0004146 - dihydrofolate reductase activity because it has no subs, instances, or parts. Deleting term GO:0050131 - N-methyl-L-amino-acid oxidase activity because it has no subs, instances, or parts. Deleting term GO:0016655 - oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor because it has no subs, instances, or parts. Deleting term GO:0008170 - N-methyltransferase activity because it has no subs, instances, or parts. Deleting term GO:0008276 - protein methyltransferase activity because it has no subs, instances, or parts. Deleting term GO:0043431 - 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinone methyltransferase activity because it has no subs, instances, or parts. Deleting term GO:0008825 - cyclopropane-fatty-acyl-phospholipid synthase activity because it has no subs, instances, or parts. Deleting term GO:0004801 - transaldolase activity because it has no subs, instances, or parts. Deleting term GO:0004802 - transketolase activity because it has no subs, instances, or parts. Deleting term GO:0008710 - 8-amino-7-oxononanoate synthase activity because it has no subs, instances, or parts. Deleting term GO:0008080 - N-acetyltransferase activity because it has no subs, instances, or parts. Deleting term GO:0003985 - acetyl-CoA C-acetyltransferase activity because it has no subs, instances, or parts. Deleting term GO:0035251 - UDP-glucosyltransferase activity because it has no subs, instances, or parts. Deleting term GO:0008921 - lipopolysaccharide-1,6-galactosyltransferase activity because it has no subs, instances, or parts. Deleting term GO:0003844 - 1,4-alpha-glucan branching enzyme activity because it has no subs, instances, or parts. Deleting term GO:0008184 - glycogen phosphorylase activity because it has no subs, instances, or parts. Deleting term GO:0031220 - maltodextrin phosphorylase activity because it has no subs, instances, or parts. Deleting term GO:0009011 - starch synthase activity because it has no subs, instances, or parts. Deleting term GO:0004731 - purine-nucleoside phosphorylase activity because it has no subs, instances, or parts. Deleting term GO:0004364 - glutathione transferase activity because it has no subs, instances, or parts. Deleting term GO:0004746 - riboflavin synthase activity because it has no subs, instances, or parts. Deleting term GO:0004015 - adenosylmethionine-8-amino-7-oxononanoate transaminase activity because it has no subs, instances, or parts. Deleting term GO:0004069 - aspartate transaminase activity because it has no subs, instances, or parts. Deleting term GO:0008793 - aromatic-amino-acid transaminase activity because it has no subs, instances, or parts. Deleting term GO:0016212 - kynurenine-oxoglutarate transaminase activity because it has no subs, instances, or parts. Deleting term GO:0003991 - acetylglutamate kinase activity because it has no subs, instances, or parts. Deleting term GO:0009030 - thiamin phosphate kinase activity because it has no subs, instances, or parts. Deleting term GO:0004856 - xylulokinase activity because it has no subs, instances, or parts. Deleting term GO:0008993 - rhamnulokinase activity because it has no subs, instances, or parts. Deleting term GO:0004340 - glucokinase activity because it has no subs, instances, or parts. Deleting term GO:0003872 - 6-phosphofructokinase activity because it has no subs, instances, or parts. Deleting term GO:0008878 - glucose-1-phosphate adenylyltransferase activity because it has no subs, instances, or parts. Deleting term GO:0016783 - sulfurtransferase activity because it has no subs, instances, or parts. Deleting term GO:0008233 - peptidase activity because it has no subs, instances, or parts. Deleting term GO:0004416 - hydroxyacylglutathione hydrolase activity because it has no subs, instances, or parts. Deleting term GO:0018738 - S-formylglutathione hydrolase activity because it has no subs, instances, or parts. Deleting term GO:0047555 - 3',5'-cyclic-GMP phosphodiesterase activity because it has no subs, instances, or parts. Deleting term GO:0008967 - phosphoglycolate phosphatase activity because it has no subs, instances, or parts. Deleting term GO:0019143 - 3-deoxy-manno-octulosonate-8-phosphatase activity because it has no subs, instances, or parts. Deleting term GO:0050308 - sugar-phosphatase activity because it has no subs, instances, or parts. Deleting term GO:0050483 - IMP 5'-nucleotidase activity because it has no subs, instances, or parts. Deleting term GO:0050484 - GMP 5'-nucleotidase activity because it has no subs, instances, or parts. Deleting term GO:0003850 - 2-deoxyglucose-6-phosphatase activity because it has no subs, instances, or parts. Deleting term GO:0004346 - glucose-6-phosphatase activity because it has no subs, instances, or parts. Deleting term GO:0004805 - trehalose-phosphatase activity because it has no subs, instances, or parts. Deleting term GO:0008877 - glucose-1-phosphatase activity because it has no subs, instances, or parts. Deleting term GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity because it has no subs, instances, or parts. Deleting term GO:0004339 - glucan 1,4-alpha-glucosidase activity because it has no subs, instances, or parts. Deleting term GO:0004556 - alpha-amylase activity because it has no subs, instances, or parts. Deleting term GO:0003998 - acylphosphatase activity because it has no subs, instances, or parts. Deleting term GO:0004170 - dUTP diphosphatase activity because it has no subs, instances, or parts. Deleting term GO:0047840 - dCTP diphosphatase activity because it has no subs, instances, or parts. Deleting term GO:0004853 - uroporphyrinogen decarboxylase activity because it has no subs, instances, or parts. Deleting term GO:0008836 - diaminopimelate decarboxylase activity because it has no subs, instances, or parts. Deleting term GO:0050179 - phenylserine aldolase activity because it has no subs, instances, or parts. Deleting term GO:0008732 - L-allo-threonine aldolase activity because it has no subs, instances, or parts. Deleting term GO:0003874 - 6-pyruvoyltetrahydropterin synthase activity because it has no subs, instances, or parts. Deleting term GO:0004056 - argininosuccinate lyase activity because it has no subs, instances, or parts. Deleting term GO:0004462 - lactoylglutathione lyase activity because it has no subs, instances, or parts. Deleting term GO:0009045 - xylose isomerase activity because it has no subs, instances, or parts. Deleting term GO:0019146 - arabinose-5-phosphate isomerase activity because it has no subs, instances, or parts. Deleting term GO:0004452 - isopentenyl-diphosphate delta-isomerase activity because it has no subs, instances, or parts. Deleting term GO:0008767 - UDP-galactopyranose mutase activity because it has no subs, instances, or parts. Deleting term GO:0000906 - 6,7-dimethyl-8-ribityllumazine synthase activity because it has no subs, instances, or parts. Deleting term GO:0004614 - phosphoglucomutase activity because it has no subs, instances, or parts. Deleting term GO:0008801 - beta-phosphoglucomutase activity because it has no subs, instances, or parts. Deleting term GO:0016886 - ligase activity, forming phosphoric ester bonds because it has no subs, instances, or parts. Deleting term GO:0004813 - alanine-tRNA ligase activity because it has no subs, instances, or parts. Deleting term GO:0004815 - aspartate-tRNA ligase activity because it has no subs, instances, or parts. Deleting term GO:0004816 - asparagine-tRNA ligase activity because it has no subs, instances, or parts. Deleting term GO:0004817 - cysteine-tRNA ligase activity because it has no subs, instances, or parts. Deleting term GO:0004820 - glycine-tRNA ligase activity because it has no subs, instances, or parts. Deleting term GO:0004821 - histidine-tRNA ligase activity because it has no subs, instances, or parts. Deleting term GO:0004822 - isoleucine-tRNA ligase activity because it has no subs, instances, or parts. Deleting term GO:0004824 - lysine-tRNA ligase activity because it has no subs, instances, or parts. Deleting term GO:0004826 - phenylalanine-tRNA ligase activity because it has no subs, instances, or parts. Deleting term GO:0004827 - proline-tRNA ligase activity because it has no subs, instances, or parts. Deleting term GO:0004828 - serine-tRNA ligase activity because it has no subs, instances, or parts. Deleting term GO:0004829 - threonine-tRNA ligase activity because it has no subs, instances, or parts. Deleting term GO:0004830 - tryptophan-tRNA ligase activity because it has no subs, instances, or parts. Deleting term GO:0004831 - tyrosine-tRNA ligase activity because it has no subs, instances, or parts. Deleting term GO:0004832 - valine-tRNA ligase activity because it has no subs, instances, or parts. Deleting term GO:0003883 - CTP synthase activity because it has no subs, instances, or parts. Deleting term GO:0003921 - GMP synthase activity because it has no subs, instances, or parts. Deleting term GO:0004019 - adenylosuccinate synthase activity because it has no subs, instances, or parts. Deleting term GO:0004141 - dethiobiotin synthase activity because it has no subs, instances, or parts. Deleting term GO:0003922 - GMP synthase (glutamine-hydrolyzing) activity because it has no subs, instances, or parts. Deleting term GO:0015453 - oxidoreduction-driven active transmembrane transporter activity because it has no subs, instances, or parts. Deleting term GO:0000900 - translation repressor activity, nucleic acid binding because it has no subs, instances, or parts. Deleting term GO:0004857 - enzyme inhibitor activity because it has no subs, instances, or parts. Deleting term GO:0008047 - enzyme activator activity because it has no subs, instances, or parts. Deleting term GO:0016563 - transcription activator activity because it has no subs, instances, or parts. Deleting term GO:0016566 - specific transcriptional repressor activity because it has no subs, instances, or parts. Deleting term GO:0030371 - translation repressor activity because it has no subs, instances, or parts. Deleting term GO:0043234 - protein complex because it has no subs, instances, or parts. Deleting term GO:0043232 - intracellular non-membrane-bounded organelle because it has no subs, instances, or parts. Deleting term GO:0044425 - membrane part because it has no subs, instances, or parts. Deleting term GO:0009279 - cell outer membrane because it has no subs, instances, or parts. Deleting term GO:0030288 - outer membrane-bounded periplasmic space because it has no subs, instances, or parts. Deleting term GO:0044445 - cytosolic part because it has no subs, instances, or parts. Deleting term GO:0009442 - allantoin assimilation pathway because it has no subs, instances, or parts. Deleting term GO:0009063 - amino acid catabolic process because it has no subs, instances, or parts. Deleting term GO:0009086 - methionine biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0019344 - cysteine biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006529 - asparagine biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006532 - aspartate biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009088 - threonine biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009089 - lysine biosynthetic process via diaminopimelate because it has no subs, instances, or parts. Deleting term GO:0006545 - glycine biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006564 - L-serine biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009090 - homoserine biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0000162 - tryptophan biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006571 - tyrosine biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009094 - L-phenylalanine biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0000105 - histidine biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006523 - alanine biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009098 - leucine biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009099 - valine biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006526 - arginine biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006537 - glutamate biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006542 - glutamine biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006561 - proline biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006525 - arginine metabolic process because it has no subs, instances, or parts. Deleting term GO:0006536 - glutamate metabolic process because it has no subs, instances, or parts. Deleting term GO:0006541 - glutamine metabolic process because it has no subs, instances, or parts. Deleting term GO:0006560 - proline metabolic process because it has no subs, instances, or parts. Deleting term GO:0006528 - asparagine metabolic process because it has no subs, instances, or parts. Deleting term GO:0006531 - aspartate metabolic process because it has no subs, instances, or parts. Deleting term GO:0006566 - threonine metabolic process because it has no subs, instances, or parts. Deleting term GO:0006544 - glycine metabolic process because it has no subs, instances, or parts. Deleting term GO:0006563 - L-serine metabolic process because it has no subs, instances, or parts. Deleting term GO:0009092 - homoserine metabolic process because it has no subs, instances, or parts. Deleting term GO:0006558 - L-phenylalanine metabolic process because it has no subs, instances, or parts. Deleting term GO:0006568 - tryptophan metabolic process because it has no subs, instances, or parts. Deleting term GO:0006570 - tyrosine metabolic process because it has no subs, instances, or parts. Deleting term GO:0006547 - histidine metabolic process because it has no subs, instances, or parts. Deleting term GO:0006522 - alanine metabolic process because it has no subs, instances, or parts. Deleting term GO:0006551 - leucine metabolic process because it has no subs, instances, or parts. Deleting term GO:0006573 - valine metabolic process because it has no subs, instances, or parts. Deleting term GO:0006419 - alanyl-tRNA aminoacylation because it has no subs, instances, or parts. Deleting term GO:0006421 - asparaginyl-tRNA aminoacylation because it has no subs, instances, or parts. Deleting term GO:0006422 - aspartyl-tRNA aminoacylation because it has no subs, instances, or parts. Deleting term GO:0006423 - cysteinyl-tRNA aminoacylation because it has no subs, instances, or parts. Deleting term GO:0006426 - glycyl-tRNA aminoacylation because it has no subs, instances, or parts. Deleting term GO:0006427 - histidyl-tRNA aminoacylation because it has no subs, instances, or parts. Deleting term GO:0006428 - isoleucyl-tRNA aminoacylation because it has no subs, instances, or parts. Deleting term GO:0006430 - lysyl-tRNA aminoacylation because it has no subs, instances, or parts. Deleting term GO:0006432 - phenylalanyl-tRNA aminoacylation because it has no subs, instances, or parts. Deleting term GO:0006433 - prolyl-tRNA aminoacylation because it has no subs, instances, or parts. Deleting term GO:0006434 - seryl-tRNA aminoacylation because it has no subs, instances, or parts. Deleting term GO:0006435 - threonyl-tRNA aminoacylation because it has no subs, instances, or parts. Deleting term GO:0006436 - tryptophanyl-tRNA aminoacylation because it has no subs, instances, or parts. Deleting term GO:0006437 - tyrosyl-tRNA aminoacylation because it has no subs, instances, or parts. Deleting term GO:0006438 - valyl-tRNA aminoacylation because it has no subs, instances, or parts. Deleting term GO:0006578 - betaine biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0046219 - indolalkylamine biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006596 - polyamine biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009447 - putrescine catabolic process because it has no subs, instances, or parts. Deleting term GO:0042413 - carnitine catabolic process because it has no subs, instances, or parts. Deleting term GO:0009450 - gamma-aminobutyric acid catabolic process because it has no subs, instances, or parts. Deleting term GO:0009440 - cyanate catabolic process because it has no subs, instances, or parts. Deleting term GO:0006308 - DNA catabolic process because it has no subs, instances, or parts. Deleting term GO:0044247 - cellular polysaccharide catabolic process because it has no subs, instances, or parts. Deleting term GO:0005980 - glycogen catabolic process because it has no subs, instances, or parts. Deleting term GO:0030980 - alpha-glucan catabolic process because it has no subs, instances, or parts. Deleting term GO:0009050 - glycopeptide catabolic process because it has no subs, instances, or parts. Deleting term GO:0019404 - galactitol catabolic process because it has no subs, instances, or parts. Deleting term GO:0046183 - L-idonate catabolic process because it has no subs, instances, or parts. Deleting term GO:0000025 - maltose catabolic process because it has no subs, instances, or parts. Deleting term GO:0019301 - rhamnose catabolic process because it has no subs, instances, or parts. Deleting term GO:0019641 - Embden-Meyerhof pathway because it has no subs, instances, or parts. Deleting term GO:0005998 - xylulose catabolic process because it has no subs, instances, or parts. Deleting term GO:0046359 - butyrate catabolic process because it has no subs, instances, or parts. Deleting term GO:0009313 - oligosaccharide catabolic process because it has no subs, instances, or parts. Deleting term GO:0019439 - aromatic compound catabolic process because it has no subs, instances, or parts. Deleting term GO:0019754 - one-carbon compound catabolic process because it has no subs, instances, or parts. Deleting term GO:0009436 - glyoxylate catabolic process because it has no subs, instances, or parts. Deleting term GO:0042867 - pyruvate catabolic process because it has no subs, instances, or parts. Deleting term GO:0045733 - acetate catabolic process because it has no subs, instances, or parts. Deleting term GO:0046296 - glycolate catabolic process because it has no subs, instances, or parts. Deleting term GO:0006152 - purine nucleoside catabolic process because it has no subs, instances, or parts. Deleting term GO:0046294 - formaldehyde catabolic process because it has no subs, instances, or parts. Deleting term GO:0019243 - methylglyoxal catabolic process to D-lactate because it has no subs, instances, or parts. Deleting term GO:0006099 - tricarboxylic acid cycle because it has no subs, instances, or parts. Deleting term GO:0045337 - farnesyl diphosphate biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006654 - phosphatidic acid biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0042966 - biotin carboxyl carrier protein biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0042967 - acyl-carrier-protein biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006261 - DNA-dependent DNA replication because it has no subs, instances, or parts. Deleting term GO:0009242 - colanic acid biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009243 - O antigen biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009246 - enterobacterial common antigen biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009248 - K antigen biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0005978 - glycogen biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009252 - peptidoglycan biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0046349 - amino sugar biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006094 - gluconeogenesis because it has no subs, instances, or parts. Deleting term GO:0009244 - lipopolysaccharide core region biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009226 - nucleotide-sugar biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0042435 - indole derivative biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009102 - biotin biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009228 - thiamin biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009231 - riboflavin biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009236 - cobalamin biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0046656 - folic acid biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009435 - NAD biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0008615 - pyridoxine biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0042823 - pyridoxal phosphate biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0019294 - ketodeoxyoctanoate biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009423 - chorismate biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006777 - Mo-molybdopterin cofactor biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0042455 - ribonucleoside biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009239 - enterobactin biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006556 - S-adenosylmethionine biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006750 - glutathione biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006747 - FAD biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009398 - FMN biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0015937 - coenzyme A biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006086 - acetyl-CoA biosynthetic process from pyruvate because it has no subs, instances, or parts. Deleting term GO:0009107 - lipoate biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009257 - 10-formyltetrahydrofolate biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006744 - ubiquinone biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009698 - phenylpropanoid metabolic process because it has no subs, instances, or parts. Deleting term GO:0005977 - glycogen metabolic process because it has no subs, instances, or parts. Deleting term GO:0030978 - alpha-glucan metabolic process because it has no subs, instances, or parts. Deleting term GO:0046375 - K antigen metabolic process because it has no subs, instances, or parts. Deleting term GO:0046377 - colanic acid metabolic process because it has no subs, instances, or parts. Deleting term GO:0046378 - enterobacterial common antigen metabolic process because it has no subs, instances, or parts. Deleting term GO:0046402 - O antigen metabolic process because it has no subs, instances, or parts. Deleting term GO:0006457 - protein folding because it has no subs, instances, or parts. Deleting term GO:0006508 - proteolysis because it has no subs, instances, or parts. Deleting term GO:0030091 - protein repair because it has no subs, instances, or parts. Deleting term GO:0016485 - protein processing because it has no subs, instances, or parts. Deleting term GO:0018364 - peptidyl-glutamine methylation because it has no subs, instances, or parts. Deleting term GO:0006266 - DNA ligation because it has no subs, instances, or parts. Deleting term GO:0006281 - DNA repair because it has no subs, instances, or parts. Deleting term GO:0006310 - DNA recombination because it has no subs, instances, or parts. Deleting term GO:0009307 - DNA restriction-modification system because it has no subs, instances, or parts. Deleting term GO:0030488 - tRNA methylation because it has no subs, instances, or parts. Deleting term GO:0001510 - RNA methylation because it has no subs, instances, or parts. Deleting term GO:0016072 - rRNA metabolic process because it has no subs, instances, or parts. Deleting term GO:0006793 - phosphorus metabolic process because it has no subs, instances, or parts. Deleting term GO:0006800 - oxygen and reactive oxygen species metabolic process because it has no subs, instances, or parts. Deleting term GO:0006805 - xenobiotic metabolic process because it has no subs, instances, or parts. Deleting term GO:0006012 - galactose metabolic process because it has no subs, instances, or parts. Deleting term GO:0019299 - rhamnose metabolic process because it has no subs, instances, or parts. Deleting term GO:0005997 - xylulose metabolic process because it has no subs, instances, or parts. Deleting term GO:0009051 - pentose-phosphate shunt, oxidative branch because it has no subs, instances, or parts. Deleting term GO:0009052 - pentose-phosphate shunt, non-oxidative branch because it has no subs, instances, or parts. Deleting term GO:0042843 - D-xylose catabolic process because it has no subs, instances, or parts. Deleting term GO:0006071 - glycerol metabolic process because it has no subs, instances, or parts. Deleting term GO:0019402 - galactitol metabolic process because it has no subs, instances, or parts. Deleting term GO:0046292 - formaldehyde metabolic process because it has no subs, instances, or parts. Deleting term GO:0006097 - glyoxylate cycle because it has no subs, instances, or parts. Deleting term GO:0046400 - ketodeoxyoctanoate metabolic process because it has no subs, instances, or parts. Deleting term GO:0046473 - phosphatidic acid metabolic process because it has no subs, instances, or parts. Deleting term GO:0009106 - lipoate metabolic process because it has no subs, instances, or parts. Deleting term GO:0006083 - acetate metabolic process because it has no subs, instances, or parts. Deleting term GO:0006089 - lactate metabolic process because it has no subs, instances, or parts. Deleting term GO:0006090 - pyruvate metabolic process because it has no subs, instances, or parts. Deleting term GO:0006768 - biotin metabolic process because it has no subs, instances, or parts. Deleting term GO:0009441 - glycolate metabolic process because it has no subs, instances, or parts. Deleting term GO:0019632 - shikimate metabolic process because it has no subs, instances, or parts. Deleting term GO:0019395 - fatty acid oxidation because it has no subs, instances, or parts. Deleting term GO:0009256 - 10-formyltetrahydrofolate metabolic process because it has no subs, instances, or parts. Deleting term GO:0046655 - folic acid metabolic process because it has no subs, instances, or parts. Deleting term GO:0019523 - L-idonate metabolic process because it has no subs, instances, or parts. Deleting term GO:0006108 - malate metabolic process because it has no subs, instances, or parts. Deleting term GO:0006112 - energy reserve metabolic process because it has no subs, instances, or parts. Deleting term GO:0006113 - fermentation because it has no subs, instances, or parts. Deleting term GO:0009060 - aerobic respiration because it has no subs, instances, or parts. Deleting term GO:0009061 - anaerobic respiration because it has no subs, instances, or parts. Deleting term GO:0009225 - nucleotide-sugar metabolic process because it has no subs, instances, or parts. Deleting term GO:0006177 - GMP biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0046037 - GMP metabolic process because it has no subs, instances, or parts. Deleting term GO:0006241 - CTP biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0046036 - CTP metabolic process because it has no subs, instances, or parts. Deleting term GO:0009265 - 2'-deoxyribonucleotide biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009394 - 2'-deoxyribonucleotide metabolic process because it has no subs, instances, or parts. Deleting term GO:0019674 - NAD metabolic process because it has no subs, instances, or parts. Deleting term GO:0009119 - ribonucleoside metabolic process because it has no subs, instances, or parts. Deleting term GO:0042278 - purine nucleoside metabolic process because it has no subs, instances, or parts. Deleting term GO:0019686 - purine nucleoside interconversion because it has no subs, instances, or parts. Deleting term GO:0046500 - S-adenosylmethionine metabolic process because it has no subs, instances, or parts. Deleting term GO:0009238 - enterobactin metabolic process because it has no subs, instances, or parts. Deleting term GO:0019720 - Mo-molybdopterin cofactor metabolic process because it has no subs, instances, or parts. Deleting term GO:0032324 - molybdopterin cofactor biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009235 - cobalamin metabolic process because it has no subs, instances, or parts. Deleting term GO:0006772 - thiamin metabolic process because it has no subs, instances, or parts. Deleting term GO:0042724 - thiamin and derivative biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006771 - riboflavin metabolic process because it has no subs, instances, or parts. Deleting term GO:0042727 - riboflavin and derivative biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0046443 - FAD metabolic process because it has no subs, instances, or parts. Deleting term GO:0046444 - FMN metabolic process because it has no subs, instances, or parts. Deleting term GO:0042822 - pyridoxal phosphate metabolic process because it has no subs, instances, or parts. Deleting term GO:0009443 - pyridoxal 5'-phosphate salvage because it has no subs, instances, or parts. Deleting term GO:0006749 - glutathione metabolic process because it has no subs, instances, or parts. Deleting term GO:0034440 - lipid oxidation because it has no subs, instances, or parts. Deleting term GO:0045338 - farnesyl diphosphate metabolic process because it has no subs, instances, or parts. Deleting term GO:0009245 - lipid A biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009255 - Entner-Doudoroff pathway because it has no subs, instances, or parts. Deleting term GO:0000023 - maltose metabolic process because it has no subs, instances, or parts. Deleting term GO:0006780 - uroporphyrinogen III biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006743 - ubiquinone metabolic process because it has no subs, instances, or parts. Deleting term GO:0006746 - FADH2 metabolic process because it has no subs, instances, or parts. Deleting term GO:0015936 - coenzyme A metabolic process because it has no subs, instances, or parts. Deleting term GO:0006040 - amino sugar metabolic process because it has no subs, instances, or parts. Deleting term GO:0009254 - peptidoglycan turnover because it has no subs, instances, or parts. Deleting term GO:0046401 - lipopolysaccharide core region metabolic process because it has no subs, instances, or parts. Deleting term GO:0009432 - SOS response because it has no subs, instances, or parts. Deleting term GO:0017004 - cytochrome complex assembly because it has no subs, instances, or parts. Deleting term GO:0043164 - Gram-negative-bacterium-type cell wall biogenesis because it has no subs, instances, or parts. Deleting term GO:0000910 - cytokinesis because it has no subs, instances, or parts. Deleting term GO:0034984 - cellular response to DNA damage stimulus because it has no subs, instances, or parts. Deleting term GO:0006970 - response to osmotic stress because it has no subs, instances, or parts. Deleting term GO:0006974 - response to DNA damage stimulus because it has no subs, instances, or parts. Deleting term GO:0006979 - response to oxidative stress because it has no subs, instances, or parts. Deleting term GO:0042594 - response to starvation because it has no subs, instances, or parts. Deleting term GO:0009269 - response to desiccation because it has no subs, instances, or parts. Deleting term GO:0031667 - response to nutrient levels because it has no subs, instances, or parts. Deleting term GO:0009266 - response to temperature stimulus because it has no subs, instances, or parts. Deleting term GO:0009410 - response to xenobiotic stimulus because it has no subs, instances, or parts. Deleting term GO:0042493 - response to drug because it has no subs, instances, or parts. Deleting term GO:0051595 - response to methylglyoxal because it has no subs, instances, or parts. Deleting term GO:0006826 - iron ion transport because it has no subs, instances, or parts. Deleting term GO:0000041 - transition metal ion transport because it has no subs, instances, or parts. Deleting term GO:0042710 - biofilm formation because it has no subs, instances, or parts. Deleting term GO:0045892 - negative regulation of transcription, DNA-dependent because it has no subs, instances, or parts. Deleting term GO:0045947 - negative regulation of translational initiation because it has no subs, instances, or parts. Deleting term GO:0006446 - regulation of translational initiation because it has no subs, instances, or parts. Deleting term GO:0006355 - regulation of transcription, DNA-dependent because it has no subs, instances, or parts. Deleting term GO:0051253 - negative regulation of RNA metabolic process because it has no subs, instances, or parts. Deleting term GO:0051252 - regulation of RNA metabolic process because it has no subs, instances, or parts. Deleting term GO:0051129 - negative regulation of cellular component organization because it has no subs, instances, or parts. Deleting term GO:0051128 - regulation of cellular component organization because it has no subs, instances, or parts. Deleting term GO:0070283 - radical SAM enzyme activity because it has no subs, instances, or parts. Deleting term GO:0004133 - glycogen debranching enzyme activity because it has no subs, instances, or parts. Deleting term GO:0033764 - steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor because it has no subs, instances, or parts. Deleting term GO:0004344 - glucose dehydrogenase activity because it has no subs, instances, or parts. Deleting term GO:0016901 - oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor because it has no subs, instances, or parts. Deleting term GO:0016615 - malate dehydrogenase activity because it has no subs, instances, or parts. Deleting term GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor because it has no subs, instances, or parts. Deleting term GO:0016646 - oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor because it has no subs, instances, or parts. Deleting term GO:0016647 - oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor because it has no subs, instances, or parts. Deleting term GO:0016651 - oxidoreductase activity, acting on NADH or NADPH because it has no subs, instances, or parts. Deleting term GO:0008171 - O-methyltransferase activity because it has no subs, instances, or parts. Deleting term GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity because it has no subs, instances, or parts. Deleting term GO:0016744 - transferase activity, transferring aldehyde or ketonic groups because it has no subs, instances, or parts. Deleting term GO:0016410 - N-acyltransferase activity because it has no subs, instances, or parts. Deleting term GO:0016453 - C-acetyltransferase activity because it has no subs, instances, or parts. Deleting term GO:0035250 - UDP-galactosyltransferase activity because it has no subs, instances, or parts. Deleting term GO:0004645 - phosphorylase activity because it has no subs, instances, or parts. Deleting term GO:0046527 - glucosyltransferase activity because it has no subs, instances, or parts. Deleting term GO:0016763 - transferase activity, transferring pentosyl groups because it has no subs, instances, or parts. Deleting term GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups because it has no subs, instances, or parts. Deleting term GO:0008483 - transaminase activity because it has no subs, instances, or parts. Deleting term GO:0016774 - phosphotransferase activity, carboxyl group as acceptor because it has no subs, instances, or parts. Deleting term GO:0016776 - phosphotransferase activity, phosphate group as acceptor because it has no subs, instances, or parts. Deleting term GO:0004396 - hexokinase activity because it has no subs, instances, or parts. Deleting term GO:0008443 - phosphofructokinase activity because it has no subs, instances, or parts. Deleting term GO:0016779 - nucleotidyltransferase activity because it has no subs, instances, or parts. Deleting term GO:0016782 - transferase activity, transferring sulfur-containing groups because it has no subs, instances, or parts. Deleting term GO:0016790 - thiolester hydrolase activity because it has no subs, instances, or parts. Deleting term GO:0004114 - 3',5'-cyclic-nucleotide phosphodiesterase activity because it has no subs, instances, or parts. Deleting term GO:0008253 - 5'-nucleotidase activity because it has no subs, instances, or parts. Deleting term GO:0019203 - carbohydrate phosphatase activity because it has no subs, instances, or parts. Deleting term GO:0015926 - glucosidase activity because it has no subs, instances, or parts. Deleting term GO:0016160 - amylase activity because it has no subs, instances, or parts. Deleting term GO:0047429 - nucleoside-triphosphate diphosphatase activity because it has no subs, instances, or parts. Deleting term GO:0016831 - carboxy-lyase activity because it has no subs, instances, or parts. Deleting term GO:0004793 - threonine aldolase activity because it has no subs, instances, or parts. Deleting term GO:0016838 - carbon-oxygen lyase activity, acting on phosphates because it has no subs, instances, or parts. Deleting term GO:0016842 - amidine-lyase activity because it has no subs, instances, or parts. Deleting term GO:0016846 - carbon-sulfur lyase activity because it has no subs, instances, or parts. Deleting term GO:0016861 - intramolecular oxidoreductase activity, interconverting aldoses and ketoses because it has no subs, instances, or parts. Deleting term GO:0016863 - intramolecular oxidoreductase activity, transposing C=C bonds because it has no subs, instances, or parts. Deleting term GO:0016867 - intramolecular transferase activity, transferring acyl groups because it has no subs, instances, or parts. Deleting term GO:0016868 - intramolecular transferase activity, phosphotransferases because it has no subs, instances, or parts. Deleting term GO:0004812 - aminoacyl-tRNA ligase activity because it has no subs, instances, or parts. Deleting term GO:0016882 - cyclo-ligase activity because it has no subs, instances, or parts. Deleting term GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor because it has no subs, instances, or parts. Deleting term GO:0015399 - primary active transmembrane transporter activity because it has no subs, instances, or parts. Deleting term GO:0008135 - translation factor activity, nucleic acid binding because it has no subs, instances, or parts. Deleting term GO:0030234 - enzyme regulator activity because it has no subs, instances, or parts. Deleting term GO:0016564 - transcription repressor activity because it has no subs, instances, or parts. Deleting term GO:0045182 - translation regulator activity because it has no subs, instances, or parts. Deleting term GO:0032991 - macromolecular complex because it has no subs, instances, or parts. Deleting term GO:0043228 - non-membrane-bounded organelle because it has no subs, instances, or parts. Deleting term GO:0043229 - intracellular organelle because it has no subs, instances, or parts. Deleting term GO:0019867 - outer membrane because it has no subs, instances, or parts. Deleting term GO:0044462 - external encapsulating structure part because it has no subs, instances, or parts. Deleting term GO:0042597 - periplasmic space because it has no subs, instances, or parts. Deleting term GO:0030313 - cell envelope because it has no subs, instances, or parts. Deleting term GO:0005829 - cytosol because it has no subs, instances, or parts. Deleting term GO:0000256 - allantoin catabolic process because it has no subs, instances, or parts. Deleting term GO:0006555 - methionine metabolic process because it has no subs, instances, or parts. Deleting term GO:0006534 - cysteine metabolic process because it has no subs, instances, or parts. Deleting term GO:0009085 - lysine biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0046451 - diaminopimelate metabolic process because it has no subs, instances, or parts. Deleting term GO:0009070 - serine family amino acid biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009095 - aromatic amino acid family biosynthetic process, prephenate pathway because it has no subs, instances, or parts. Deleting term GO:0009076 - histidine family amino acid biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009079 - pyruvate family amino acid biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009082 - branched chain family amino acid biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009084 - glutamine family amino acid biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009064 - glutamine family amino acid metabolic process because it has no subs, instances, or parts. Deleting term GO:0009069 - serine family amino acid metabolic process because it has no subs, instances, or parts. Deleting term GO:0009075 - histidine family amino acid metabolic process because it has no subs, instances, or parts. Deleting term GO:0009078 - pyruvate family amino acid metabolic process because it has no subs, instances, or parts. Deleting term GO:0009081 - branched chain family amino acid metabolic process because it has no subs, instances, or parts. Deleting term GO:0006418 - tRNA aminoacylation for protein translation because it has no subs, instances, or parts. Deleting term GO:0006577 - betaine metabolic process because it has no subs, instances, or parts. Deleting term GO:0006586 - indolalkylamine metabolic process because it has no subs, instances, or parts. Deleting term GO:0042401 - biogenic amine biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006598 - polyamine catabolic process because it has no subs, instances, or parts. Deleting term GO:0009445 - putrescine metabolic process because it has no subs, instances, or parts. Deleting term GO:0009437 - carnitine metabolic process because it has no subs, instances, or parts. Deleting term GO:0042402 - biogenic amine catabolic process because it has no subs, instances, or parts. Deleting term GO:0009448 - gamma-aminobutyric acid metabolic process because it has no subs, instances, or parts. Deleting term GO:0042219 - amino acid derivative catabolic process because it has no subs, instances, or parts. Deleting term GO:0009439 - cyanate metabolic process because it has no subs, instances, or parts. Deleting term GO:0009251 - glucan catabolic process because it has no subs, instances, or parts. Deleting term GO:0006516 - glycoprotein catabolic process because it has no subs, instances, or parts. Deleting term GO:0019407 - hexitol catabolic process because it has no subs, instances, or parts. Deleting term GO:0046181 - ketogluconate catabolic process because it has no subs, instances, or parts. Deleting term GO:0046352 - disaccharide catabolic process because it has no subs, instances, or parts. Deleting term GO:0006096 - glycolysis because it has no subs, instances, or parts. Deleting term GO:0019323 - pentose catabolic process because it has no subs, instances, or parts. Deleting term GO:0019605 - butyrate metabolic process because it has no subs, instances, or parts. Deleting term GO:0019626 - short-chain fatty acid catabolic process because it has no subs, instances, or parts. Deleting term GO:0009164 - nucleoside catabolic process because it has no subs, instances, or parts. Deleting term GO:0051596 - methylglyoxal catabolic process because it has no subs, instances, or parts. Deleting term GO:0046356 - acetyl-CoA catabolic process because it has no subs, instances, or parts. Deleting term GO:0016094 - polyprenol biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0046474 - glycerophospholipid biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006260 - DNA replication because it has no subs, instances, or parts. Deleting term GO:0009250 - glucan biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0019319 - hexose biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009312 - oligosaccharide biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0042434 - indole derivative metabolic process because it has no subs, instances, or parts. Deleting term GO:0019363 - pyridine nucleotide biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0042819 - vitamin B6 biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0043650 - dicarboxylic acid biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0042559 - pteridine and derivative biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009163 - nucleoside biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0019540 - siderophore biosynthetic process from catechol because it has no subs, instances, or parts. Deleting term GO:0000097 - sulfur amino acid biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0044272 - sulfur compound biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006085 - acetyl-CoA biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009105 - lipoic acid biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009396 - folic acid and derivative biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0045426 - quinone cofactor biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0019748 - secondary metabolic process because it has no subs, instances, or parts. Deleting term GO:0006073 - cellular glucan metabolic process because it has no subs, instances, or parts. Deleting term GO:0006479 - protein amino acid methylation because it has no subs, instances, or parts. Deleting term GO:0006304 - DNA modification because it has no subs, instances, or parts. Deleting term GO:0006400 - tRNA modification because it has no subs, instances, or parts. Deleting term GO:0009451 - RNA modification because it has no subs, instances, or parts. Deleting term GO:0043414 - biopolymer methylation because it has no subs, instances, or parts. Deleting term GO:0006098 - pentose-phosphate shunt because it has no subs, instances, or parts. Deleting term GO:0042732 - D-xylose metabolic process because it has no subs, instances, or parts. Deleting term GO:0006059 - hexitol metabolic process because it has no subs, instances, or parts. Deleting term GO:0046487 - glyoxylate metabolic process because it has no subs, instances, or parts. Deleting term GO:0006650 - glycerophospholipid metabolic process because it has no subs, instances, or parts. Deleting term GO:0000273 - lipoic acid metabolic process because it has no subs, instances, or parts. Deleting term GO:0006760 - folic acid and derivative metabolic process because it has no subs, instances, or parts. Deleting term GO:0019522 - ketogluconate metabolic process because it has no subs, instances, or parts. Deleting term GO:0045333 - cellular respiration because it has no subs, instances, or parts. Deleting term GO:0009168 - purine ribonucleoside monophosphate biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009167 - purine ribonucleoside monophosphate metabolic process because it has no subs, instances, or parts. Deleting term GO:0009209 - pyrimidine ribonucleoside triphosphate biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009208 - pyrimidine ribonucleoside triphosphate metabolic process because it has no subs, instances, or parts. Deleting term GO:0009263 - deoxyribonucleotide biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009262 - deoxyribonucleotide metabolic process because it has no subs, instances, or parts. Deleting term GO:0009116 - nucleoside metabolic process because it has no subs, instances, or parts. Deleting term GO:0015949 - nucleobase, nucleoside and nucleotide interconversion because it has no subs, instances, or parts. Deleting term GO:0043545 - molybdopterin cofactor metabolic process because it has no subs, instances, or parts. Deleting term GO:0042723 - thiamin and derivative metabolic process because it has no subs, instances, or parts. Deleting term GO:0042726 - riboflavin and derivative metabolic process because it has no subs, instances, or parts. Deleting term GO:0008614 - pyridoxine metabolic process because it has no subs, instances, or parts. Deleting term GO:0043094 - cellular metabolic compound salvage because it has no subs, instances, or parts. Deleting term GO:0030258 - lipid modification because it has no subs, instances, or parts. Deleting term GO:0016093 - polyprenol metabolic process because it has no subs, instances, or parts. Deleting term GO:0046493 - lipid A metabolic process because it has no subs, instances, or parts. Deleting term GO:0009103 - lipopolysaccharide biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0005984 - disaccharide metabolic process because it has no subs, instances, or parts. Deleting term GO:0046502 - uroporphyrinogen III metabolic process because it has no subs, instances, or parts. Deleting term GO:0006779 - porphyrin biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0042375 - quinone cofactor metabolic process because it has no subs, instances, or parts. Deleting term GO:0006752 - group transfer coenzyme metabolic process because it has no subs, instances, or parts. Deleting term GO:0000270 - peptidoglycan metabolic process because it has no subs, instances, or parts. Deleting term GO:0009311 - oligosaccharide metabolic process because it has no subs, instances, or parts. Deleting term GO:0008653 - lipopolysaccharide metabolic process because it has no subs, instances, or parts. Deleting term GO:0031668 - cellular response to extracellular stimulus because it has no subs, instances, or parts. Deleting term GO:0043623 - cellular protein complex assembly because it has no subs, instances, or parts. Deleting term GO:0009273 - peptidoglycan-based cell wall biogenesis because it has no subs, instances, or parts. Deleting term GO:0043163 - cell envelope organization because it has no subs, instances, or parts. Deleting term GO:0051301 - cell division because it has no subs, instances, or parts. Deleting term GO:0033554 - cellular response to stress because it has no subs, instances, or parts. Deleting term GO:0009414 - response to water deprivation because it has no subs, instances, or parts. Deleting term GO:0009991 - response to extracellular stimulus because it has no subs, instances, or parts. Deleting term GO:0009636 - response to toxin because it has no subs, instances, or parts. Deleting term GO:0015674 - di-, tri-valent inorganic cation transport because it has no subs, instances, or parts. Deleting term GO:0030001 - metal ion transport because it has no subs, instances, or parts. Deleting term GO:0051704 - multi-organism process because it has no subs, instances, or parts. Deleting term GO:0016481 - negative regulation of transcription because it has no subs, instances, or parts. Deleting term GO:0017148 - negative regulation of translation because it has no subs, instances, or parts. Deleting term GO:0006417 - regulation of translation because it has no subs, instances, or parts. Deleting term GO:0006413 - translational initiation because it has no subs, instances, or parts. Deleting term GO:0045449 - regulation of transcription because it has no subs, instances, or parts. Deleting term GO:0006351 - transcription, DNA-dependent because it has no subs, instances, or parts. Deleting term GO:0045934 - negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process because it has no subs, instances, or parts. Deleting term GO:0019219 - regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process because it has no subs, instances, or parts. Deleting term GO:0016229 - steroid dehydrogenase activity because it has no subs, instances, or parts. Deleting term GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors because it has no subs, instances, or parts. Deleting term GO:0016645 - oxidoreductase activity, acting on the CH-NH group of donors because it has no subs, instances, or parts. Deleting term GO:0016491 - oxidoreductase activity because it has no subs, instances, or parts. Deleting term GO:0008168 - methyltransferase activity because it has no subs, instances, or parts. Deleting term GO:0016407 - acetyltransferase activity because it has no subs, instances, or parts. Deleting term GO:0016408 - C-acyltransferase activity because it has no subs, instances, or parts. Deleting term GO:0008378 - galactosyltransferase activity because it has no subs, instances, or parts. Deleting term GO:0008194 - UDP-glycosyltransferase activity because it has no subs, instances, or parts. Deleting term GO:0016758 - transferase activity, transferring hexosyl groups because it has no subs, instances, or parts. Deleting term GO:0016757 - transferase activity, transferring glycosyl groups because it has no subs, instances, or parts. Deleting term GO:0016769 - transferase activity, transferring nitrogenous groups because it has no subs, instances, or parts. Deleting term GO:0016773 - phosphotransferase activity, alcohol group as acceptor because it has no subs, instances, or parts. Deleting term GO:0019200 - carbohydrate kinase activity because it has no subs, instances, or parts. Deleting term GO:0004112 - cyclic-nucleotide phosphodiesterase activity because it has no subs, instances, or parts. Deleting term GO:0008252 - nucleotidase activity because it has no subs, instances, or parts. Deleting term GO:0016791 - phosphatase activity because it has no subs, instances, or parts. Deleting term GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds because it has no subs, instances, or parts. Deleting term GO:0016462 - pyrophosphatase activity because it has no subs, instances, or parts. Deleting term GO:0016832 - aldehyde-lyase activity because it has no subs, instances, or parts. Deleting term GO:0016835 - carbon-oxygen lyase activity because it has no subs, instances, or parts. Deleting term GO:0016840 - carbon-nitrogen lyase activity because it has no subs, instances, or parts. Deleting term GO:0016860 - intramolecular oxidoreductase activity because it has no subs, instances, or parts. Deleting term GO:0016866 - intramolecular transferase activity because it has no subs, instances, or parts. Deleting term GO:0016876 - ligase activity, forming aminoacyl-tRNA and related compounds because it has no subs, instances, or parts. Deleting term GO:0016879 - ligase activity, forming carbon-nitrogen bonds because it has no subs, instances, or parts. Deleting term GO:0022804 - active transmembrane transporter activity because it has no subs, instances, or parts. Deleting term GO:0003676 - nucleic acid binding because it has no subs, instances, or parts. Deleting term GO:0030528 - transcription regulator activity because it has no subs, instances, or parts. Deleting term GO:0043226 - organelle because it has no subs, instances, or parts. Deleting term GO:0016020 - membrane because it has no subs, instances, or parts. Deleting term GO:0030312 - external encapsulating structure because it has no subs, instances, or parts. Deleting term GO:0031975 - envelope because it has no subs, instances, or parts. Deleting term GO:0044444 - cytoplasmic part because it has no subs, instances, or parts. Deleting term GO:0005737 - cytoplasm because it has no subs, instances, or parts. Deleting term GO:0000255 - allantoin metabolic process because it has no subs, instances, or parts. Deleting term GO:0046700 - heterocycle catabolic process because it has no subs, instances, or parts. Deleting term GO:0006553 - lysine metabolic process because it has no subs, instances, or parts. Deleting term GO:0009067 - aspartate family amino acid biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009073 - aromatic amino acid family biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0043039 - tRNA aminoacylation because it has no subs, instances, or parts. Deleting term GO:0042398 - amino acid derivative biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006595 - polyamine metabolic process because it has no subs, instances, or parts. Deleting term GO:0006576 - biogenic amine metabolic process because it has no subs, instances, or parts. Deleting term GO:0009310 - amine catabolic process because it has no subs, instances, or parts. Deleting term GO:0006575 - amino acid derivative metabolic process because it has no subs, instances, or parts. Deleting term GO:0000272 - polysaccharide catabolic process because it has no subs, instances, or parts. Deleting term GO:0009100 - glycoprotein metabolic process because it has no subs, instances, or parts. Deleting term GO:0019405 - alditol catabolic process because it has no subs, instances, or parts. Deleting term GO:0046176 - aldonic acid catabolic process because it has no subs, instances, or parts. Deleting term GO:0009062 - fatty acid catabolic process because it has no subs, instances, or parts. Deleting term GO:0046459 - short-chain fatty acid metabolic process because it has no subs, instances, or parts. Deleting term GO:0034656 - nucleobase, nucleoside and nucleotide catabolic process because it has no subs, instances, or parts. Deleting term GO:0009438 - methylglyoxal metabolic process because it has no subs, instances, or parts. Deleting term GO:0046185 - aldehyde catabolic process because it has no subs, instances, or parts. Deleting term GO:0009109 - coenzyme catabolic process because it has no subs, instances, or parts. Deleting term GO:0016091 - prenol biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0008654 - phospholipid biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0046364 - monosaccharide biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0042430 - indole and derivative metabolic process because it has no subs, instances, or parts. Deleting term GO:0042364 - water-soluble vitamin biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0046394 - carboxylic acid biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0019438 - aromatic compound biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0034404 - nucleobase, nucleoside and nucleotide biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009712 - catechol metabolic process because it has no subs, instances, or parts. Deleting term GO:0019290 - siderophore biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0000096 - sulfur amino acid metabolic process because it has no subs, instances, or parts. Deleting term GO:0008652 - amino acid biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006790 - sulfur metabolic process because it has no subs, instances, or parts. Deleting term GO:0006084 - acetyl-CoA metabolic process because it has no subs, instances, or parts. Deleting term GO:0009108 - coenzyme biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0044042 - glucan metabolic process because it has no subs, instances, or parts. Deleting term GO:0008213 - protein amino acid alkylation because it has no subs, instances, or parts. Deleting term GO:0006259 - DNA metabolic process because it has no subs, instances, or parts. Deleting term GO:0008033 - tRNA processing because it has no subs, instances, or parts. Deleting term GO:0032259 - methylation because it has no subs, instances, or parts. Deleting term GO:0006007 - glucose catabolic process because it has no subs, instances, or parts. Deleting term GO:0006740 - NADPH regeneration because it has no subs, instances, or parts. Deleting term GO:0019321 - pentose metabolic process because it has no subs, instances, or parts. Deleting term GO:0019400 - alditol metabolic process because it has no subs, instances, or parts. Deleting term GO:0006081 - cellular aldehyde metabolic process because it has no subs, instances, or parts. Deleting term GO:0006644 - phospholipid metabolic process because it has no subs, instances, or parts. Deleting term GO:0019520 - aldonic acid metabolic process because it has no subs, instances, or parts. Deleting term GO:0015980 - energy derivation by oxidation of organic compounds because it has no subs, instances, or parts. Deleting term GO:0009127 - purine nucleoside monophosphate biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009152 - purine ribonucleotide biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009156 - ribonucleoside monophosphate biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009161 - ribonucleoside monophosphate metabolic process because it has no subs, instances, or parts. Deleting term GO:0009126 - purine nucleoside monophosphate metabolic process because it has no subs, instances, or parts. Deleting term GO:0009150 - purine ribonucleotide metabolic process because it has no subs, instances, or parts. Deleting term GO:0009201 - ribonucleoside triphosphate biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009220 - pyrimidine ribonucleotide biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009147 - pyrimidine nucleoside triphosphate metabolic process because it has no subs, instances, or parts. Deleting term GO:0009199 - ribonucleoside triphosphate metabolic process because it has no subs, instances, or parts. Deleting term GO:0009218 - pyrimidine ribonucleotide metabolic process because it has no subs, instances, or parts. Deleting term GO:0042558 - pteridine and derivative metabolic process because it has no subs, instances, or parts. Deleting term GO:0042816 - vitamin B6 metabolic process because it has no subs, instances, or parts. Deleting term GO:0016090 - prenol metabolic process because it has no subs, instances, or parts. Deleting term GO:0033692 - cellular polysaccharide biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006778 - porphyrin metabolic process because it has no subs, instances, or parts. Deleting term GO:0033014 - tetrapyrrole biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0051188 - cofactor biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0044264 - cellular polysaccharide metabolic process because it has no subs, instances, or parts. Deleting term GO:0007154 - cell communication because it has no subs, instances, or parts. Deleting term GO:0006461 - protein complex assembly because it has no subs, instances, or parts. Deleting term GO:0031504 - peptidoglycan-based cell wall organization because it has no subs, instances, or parts. Deleting term GO:0042546 - cell wall biogenesis because it has no subs, instances, or parts. Deleting term GO:0051716 - cellular response to stimulus because it has no subs, instances, or parts. Deleting term GO:0006950 - response to stress because it has no subs, instances, or parts. Deleting term GO:0009415 - response to water because it has no subs, instances, or parts. Deleting term GO:0009605 - response to external stimulus because it has no subs, instances, or parts. Deleting term GO:0042221 - response to chemical stimulus because it has no subs, instances, or parts. Deleting term GO:0006812 - cation transport because it has no subs, instances, or parts. Deleting term GO:0010629 - negative regulation of gene expression because it has no subs, instances, or parts. Deleting term GO:0010558 - negative regulation of macromolecule biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0031327 - negative regulation of cellular biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0032269 - negative regulation of cellular protein metabolic process because it has no subs, instances, or parts. Deleting term GO:0010608 - posttranscriptional regulation of gene expression because it has no subs, instances, or parts. Deleting term GO:0032268 - regulation of cellular protein metabolic process because it has no subs, instances, or parts. Deleting term GO:0006412 - translation because it has no subs, instances, or parts. Deleting term GO:0022618 - ribonucleoprotein complex assembly because it has no subs, instances, or parts. Deleting term GO:0010468 - regulation of gene expression because it has no subs, instances, or parts. Deleting term GO:0010556 - regulation of macromolecule biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0031326 - regulation of cellular biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0032774 - RNA biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006350 - transcription because it has no subs, instances, or parts. Deleting term GO:0031324 - negative regulation of cellular metabolic process because it has no subs, instances, or parts. Deleting term GO:0031323 - regulation of cellular metabolic process because it has no subs, instances, or parts. Deleting term GO:0016741 - transferase activity, transferring one-carbon groups because it has no subs, instances, or parts. Deleting term GO:0008415 - acyltransferase activity because it has no subs, instances, or parts. Deleting term GO:0016301 - kinase activity because it has no subs, instances, or parts. Deleting term GO:0008081 - phosphoric diester hydrolase activity because it has no subs, instances, or parts. Deleting term GO:0042578 - phosphoric ester hydrolase activity because it has no subs, instances, or parts. Deleting term GO:0016798 - hydrolase activity, acting on glycosyl bonds because it has no subs, instances, or parts. Deleting term GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides because it has no subs, instances, or parts. Deleting term GO:0016830 - carbon-carbon lyase activity because it has no subs, instances, or parts. Deleting term GO:0016829 - lyase activity because it has no subs, instances, or parts. Deleting term GO:0016853 - isomerase activity because it has no subs, instances, or parts. Deleting term GO:0016875 - ligase activity, forming carbon-oxygen bonds because it has no subs, instances, or parts. Deleting term GO:0016874 - ligase activity because it has no subs, instances, or parts. Deleting term GO:0022857 - transmembrane transporter activity because it has no subs, instances, or parts. Deleting term GO:0005488 - binding because it has no subs, instances, or parts. Deleting term GO:0044424 - intracellular part because it has no subs, instances, or parts. Deleting term GO:0005622 - intracellular because it has no subs, instances, or parts. Deleting term GO:0009066 - aspartate family amino acid metabolic process because it has no subs, instances, or parts. Deleting term GO:0009072 - aromatic amino acid family metabolic process because it has no subs, instances, or parts. Deleting term GO:0046417 - chorismate metabolic process because it has no subs, instances, or parts. Deleting term GO:0043038 - amino acid activation because it has no subs, instances, or parts. Deleting term GO:0044270 - nitrogen compound catabolic process because it has no subs, instances, or parts. Deleting term GO:0043285 - biopolymer catabolic process because it has no subs, instances, or parts. Deleting term GO:0046174 - polyol catabolic process because it has no subs, instances, or parts. Deleting term GO:0044242 - cellular lipid catabolic process because it has no subs, instances, or parts. Deleting term GO:0046395 - carboxylic acid catabolic process because it has no subs, instances, or parts. Deleting term GO:0006631 - fatty acid metabolic process because it has no subs, instances, or parts. Deleting term GO:0034655 - nucleobase, nucleoside, nucleotide and nucleic acid catabolic process because it has no subs, instances, or parts. Deleting term GO:0051187 - cofactor catabolic process because it has no subs, instances, or parts. Deleting term GO:0008299 - isoprenoid biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0046467 - membrane lipid biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0046165 - alcohol biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009110 - vitamin biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0016053 - organic acid biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0034654 - nucleobase, nucleoside, nucleotide and nucleic acid biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0018958 - phenol metabolic process because it has no subs, instances, or parts. Deleting term GO:0009237 - siderophore metabolic process because it has no subs, instances, or parts. Deleting term GO:0019184 - nonribosomal peptide biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006520 - amino acid metabolic process because it has no subs, instances, or parts. Deleting term GO:0009309 - amine biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0043687 - post-translational protein modification because it has no subs, instances, or parts. Deleting term GO:0006399 - tRNA metabolic process because it has no subs, instances, or parts. Deleting term GO:0034470 - ncRNA processing because it has no subs, instances, or parts. Deleting term GO:0006730 - one-carbon compound metabolic process because it has no subs, instances, or parts. Deleting term GO:0006006 - glucose metabolic process because it has no subs, instances, or parts. Deleting term GO:0019320 - hexose catabolic process because it has no subs, instances, or parts. Deleting term GO:0006739 - NADP metabolic process because it has no subs, instances, or parts. Deleting term GO:0019751 - polyol metabolic process because it has no subs, instances, or parts. Deleting term GO:0006643 - membrane lipid metabolic process because it has no subs, instances, or parts. Deleting term GO:0032787 - monocarboxylic acid metabolic process because it has no subs, instances, or parts. Deleting term GO:0006091 - generation of precursor metabolites and energy because it has no subs, instances, or parts. Deleting term GO:0006164 - purine nucleotide biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009124 - nucleoside monophosphate biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009123 - nucleoside monophosphate metabolic process because it has no subs, instances, or parts. Deleting term GO:0006163 - purine nucleotide metabolic process because it has no subs, instances, or parts. Deleting term GO:0009142 - nucleoside triphosphate biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006221 - pyrimidine nucleotide biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009260 - ribonucleotide biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009141 - nucleoside triphosphate metabolic process because it has no subs, instances, or parts. Deleting term GO:0006220 - pyrimidine nucleotide metabolic process because it has no subs, instances, or parts. Deleting term GO:0009259 - ribonucleotide metabolic process because it has no subs, instances, or parts. Deleting term GO:0006725 - cellular aromatic compound metabolic process because it has no subs, instances, or parts. Deleting term GO:0006720 - isoprenoid metabolic process because it has no subs, instances, or parts. Deleting term GO:0000271 - polysaccharide biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0034637 - cellular carbohydrate biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0033013 - tetrapyrrole metabolic process because it has no subs, instances, or parts. Deleting term GO:0005976 - polysaccharide metabolic process because it has no subs, instances, or parts. Deleting term GO:0007047 - cell wall organization because it has no subs, instances, or parts. Deleting term GO:0009628 - response to abiotic stimulus because it has no subs, instances, or parts. Deleting term GO:0050896 - response to stimulus because it has no subs, instances, or parts. Deleting term GO:0006811 - ion transport because it has no subs, instances, or parts. Deleting term GO:0009890 - negative regulation of biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0051248 - negative regulation of protein metabolic process because it has no subs, instances, or parts. Deleting term GO:0051246 - regulation of protein metabolic process because it has no subs, instances, or parts. Deleting term GO:0034622 - cellular macromolecular complex assembly because it has no subs, instances, or parts. Deleting term GO:0009889 - regulation of biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0034961 - cellular biopolymer biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0048523 - negative regulation of cellular process because it has no subs, instances, or parts. Deleting term GO:0050794 - regulation of cellular process because it has no subs, instances, or parts. Deleting term GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups because it has no subs, instances, or parts. Deleting term GO:0016772 - transferase activity, transferring phosphorus-containing groups because it has no subs, instances, or parts. Deleting term GO:0016788 - hydrolase activity, acting on ester bonds because it has no subs, instances, or parts. Deleting term GO:0016817 - hydrolase activity, acting on acid anhydrides because it has no subs, instances, or parts. Deleting term GO:0005215 - transporter activity because it has no subs, instances, or parts. Deleting term GO:0044464 - cell part because it has no subs, instances, or parts. Deleting term GO:0005623 - cell because it has no subs, instances, or parts. Deleting term GO:0043648 - dicarboxylic acid metabolic process because it has no subs, instances, or parts. Deleting term GO:0016042 - lipid catabolic process because it has no subs, instances, or parts. Deleting term GO:0016054 - organic acid catabolic process because it has no subs, instances, or parts. Deleting term GO:0008610 - lipid biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0043043 - peptide biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0006519 - cellular amino acid and derivative metabolic process because it has no subs, instances, or parts. Deleting term GO:0044271 - nitrogen compound biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009308 - cellular amine metabolic process because it has no subs, instances, or parts. Deleting term GO:0006464 - protein modification process because it has no subs, instances, or parts. Deleting term GO:0034660 - ncRNA metabolic process because it has no subs, instances, or parts. Deleting term GO:0006396 - RNA processing because it has no subs, instances, or parts. Deleting term GO:0019318 - hexose metabolic process because it has no subs, instances, or parts. Deleting term GO:0046365 - monosaccharide catabolic process because it has no subs, instances, or parts. Deleting term GO:0006769 - nicotinamide metabolic process because it has no subs, instances, or parts. Deleting term GO:0019752 - carboxylic acid metabolic process because it has no subs, instances, or parts. Deleting term GO:0009165 - nucleotide biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0044255 - cellular lipid metabolic process because it has no subs, instances, or parts. Deleting term GO:0016051 - carbohydrate biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0046483 - heterocycle metabolic process because it has no subs, instances, or parts. Deleting term GO:0045229 - external encapsulating structure organization because it has no subs, instances, or parts. Deleting term GO:0006810 - transport because it has no subs, instances, or parts. Deleting term GO:0010605 - negative regulation of macromolecule metabolic process because it has no subs, instances, or parts. Deleting term GO:0060255 - regulation of macromolecule metabolic process because it has no subs, instances, or parts. Deleting term GO:0034621 - cellular macromolecular complex subunit organization because it has no subs, instances, or parts. Deleting term GO:0065003 - macromolecular complex assembly because it has no subs, instances, or parts. Deleting term GO:0034645 - cellular macromolecule biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0043284 - biopolymer biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0016746 - transferase activity, transferring acyl groups because it has no subs, instances, or parts. Deleting term GO:0016740 - transferase activity because it has no subs, instances, or parts. Deleting term GO:0016787 - hydrolase activity because it has no subs, instances, or parts. Deleting term GO:0005575 - cellular_component because it has no subs, instances, or parts. Deleting term GO:0006518 - peptide metabolic process because it has no subs, instances, or parts. Deleting term GO:0034641 - cellular nitrogen compound metabolic process because it has no subs, instances, or parts. Deleting term GO:0043412 - biopolymer modification because it has no subs, instances, or parts. Deleting term GO:0044267 - cellular protein metabolic process because it has no subs, instances, or parts. Deleting term GO:0016070 - RNA metabolic process because it has no subs, instances, or parts. Deleting term GO:0005996 - monosaccharide metabolic process because it has no subs, instances, or parts. Deleting term GO:0044275 - cellular carbohydrate catabolic process because it has no subs, instances, or parts. Deleting term GO:0046164 - alcohol catabolic process because it has no subs, instances, or parts. Deleting term GO:0019362 - pyridine nucleotide metabolic process because it has no subs, instances, or parts. Deleting term GO:0006082 - organic acid metabolic process because it has no subs, instances, or parts. Deleting term GO:0009117 - nucleotide metabolic process because it has no subs, instances, or parts. Deleting term GO:0006629 - lipid metabolic process because it has no subs, instances, or parts. Deleting term GO:0051234 - establishment of localization because it has no subs, instances, or parts. Deleting term GO:0009892 - negative regulation of metabolic process because it has no subs, instances, or parts. Deleting term GO:0019222 - regulation of metabolic process because it has no subs, instances, or parts. Deleting term GO:0022607 - cellular component assembly because it has no subs, instances, or parts. Deleting term GO:0043933 - macromolecular complex subunit organization because it has no subs, instances, or parts. Deleting term GO:0044249 - cellular biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0009059 - macromolecule biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0003824 - catalytic activity because it has no subs, instances, or parts. Deleting term GO:0006807 - nitrogen compound metabolic process because it has no subs, instances, or parts. Deleting term GO:0019538 - protein metabolic process because it has no subs, instances, or parts. Deleting term GO:0034960 - cellular biopolymer metabolic process because it has no subs, instances, or parts. Deleting term GO:0016052 - carbohydrate catabolic process because it has no subs, instances, or parts. Deleting term GO:0044262 - cellular carbohydrate metabolic process because it has no subs, instances, or parts. Deleting term GO:0044265 - cellular macromolecule catabolic process because it has no subs, instances, or parts. Deleting term GO:0006066 - cellular alcohol metabolic process because it has no subs, instances, or parts. Deleting term GO:0044248 - cellular catabolic process because it has no subs, instances, or parts. Deleting term GO:0006733 - oxidoreduction coenzyme metabolic process because it has no subs, instances, or parts. Deleting term GO:0006767 - water-soluble vitamin metabolic process because it has no subs, instances, or parts. Deleting term GO:0006753 - nucleoside phosphate metabolic process because it has no subs, instances, or parts. Deleting term GO:0051179 - localization because it has no subs, instances, or parts. Deleting term GO:0048519 - negative regulation of biological process because it has no subs, instances, or parts. Deleting term GO:0050789 - regulation of biological process because it has no subs, instances, or parts. Deleting term GO:0016043 - cellular component organization because it has no subs, instances, or parts. Deleting term GO:0009058 - biosynthetic process because it has no subs, instances, or parts. Deleting term GO:0003674 - molecular_function because it has no subs, instances, or parts. Deleting term GO:0043283 - biopolymer metabolic process because it has no subs, instances, or parts. Deleting term GO:0005975 - carbohydrate metabolic process because it has no subs, instances, or parts. Deleting term GO:0009057 - macromolecule catabolic process because it has no subs, instances, or parts. Deleting term GO:0044260 - cellular macromolecule metabolic process because it has no subs, instances, or parts. Deleting term GO:0009056 - catabolic process because it has no subs, instances, or parts. Deleting term GO:0006732 - coenzyme metabolic process because it has no subs, instances, or parts. Deleting term GO:0006766 - vitamin metabolic process because it has no subs, instances, or parts. Deleting term GO:0055086 - nucleobase, nucleoside and nucleotide metabolic process because it has no subs, instances, or parts. Deleting term GO:0065007 - biological regulation because it has no subs, instances, or parts. Deleting term GO:0043170 - macromolecule metabolic process because it has no subs, instances, or parts. Deleting term GO:0051186 - cofactor metabolic process because it has no subs, instances, or parts. Deleting term GO:0006139 - nucleobase, nucleoside, nucleotide and nucleic acid metabolic process because it has no subs, instances, or parts. Deleting term GO:0044237 - cellular metabolic process because it has no subs, instances, or parts. Deleting term GO:0044238 - primary metabolic process because it has no subs, instances, or parts. Deleting term GO:0009987 - cellular process because it has no subs, instances, or parts. Deleting term GO:0008152 - metabolic process because it has no subs, instances, or parts. Deleting term GO:0008150 - biological_process because it has no subs, instances, or parts. == Done validating GO terms == ===== Changing compound name strings to frame IDs in a variety of slots ===== [Checking class Enzymatic-Reactions] [Checking class Reactions] --- Importing compounds [Copied 1 frames; overwrote 0 of them] "PEPTIDE DIPHTHAMIDE" --> CPD-10454 peptide diphthamide in 2.4.2.36-RXN --- Importing compounds [Copied 1 frames; overwrote 0 of them] "PEPTIDE N-(ADP-D-RIBOSYL)DIPHTHAMIDE" --> CPD-10461 peptide N-(ADP-D-ribosyl)diphthamide in 2.4.2.36-RXN "(ADP-D-RIBOSYL)(N)-ACCEPTOR" --> ADP-D-Ribosyl-Acceptors a ADP-D-ribosyl acceptor in NAD+-ADP-RIBOSYLTRANSFERASE-RXN "(ADP-D-RIBOSYL)(N+1)-ACCEPTOR" --> ADP-D-Ribosyl-Acceptors a ADP-D-ribosyl acceptor in NAD+-ADP-RIBOSYLTRANSFERASE-RXN (RXN-1541 (NARINGENIN-CMPD) (ISOFLAVONE)) --> (RXN-1541 (NARINGENIN-CMPD) (#)) in #, PRIMARIES == Done changing compound name strings to compound frame IDs == ===== Checking pathway predecessors/reactions/subs ==== Adjusting predecessor list of super-pathway GLUDEG-II-PWY ===== Removing newlines from names ==== ===== Clearing computed slot values ==== == Done running all the Misc automatic checks == ===== Classifying modified proteins as such ==== ===== Updating molecular weights of polypeptides from amino acid sequences ==== Updated 0 protein molecular weights from sequence == Done with protein updates == ===== Checking compound structures for redundancy ===== Checking Compound structures for redundant bonds == Done checking compound structure redundancies == ====Recomputing statistics for database sorghumcyc==== Recomputed statistics are as follows: (PSEUDOGENE-NUMBER 0 ENZYMATIC-REACTION-NUMBER 1929 CITATION-COUNT 167 GENOME-LENGTH 700981858 MAPPED-GENE-NUMBER 36338 UN-MAPPED-GENE-NUMBER 0 PROTEIN-GENE-NUMBER 36338 RNA-GENE-NUMBER 0 ORF-GENE-NUMBER 0 REACTION-NUMBER 1959 NO-EC-REACTION-NUMBER 522 ORGANISM-REACTION-NUMBER 1959 TRANSPORT-REACTION-NUMBER 8 POLYPEPTIDE-NUMBER 36351 COMPLEX-NUMBER 2 ENZYME-NUMBER 10636 TRANSPORTER-NUMBER 258 CPD-NUMBER 1464 TOTAL-GENE-NUMBER 36338 OPERON-NUMBER 0 TRNA-NUMBER 0 LAST-TIME-STAMP 21-May-2009 16:18:01) == Done recomputing statistics for database sorghumcyc == The report from this consistency checker run can be found at /usr/local/pathway-tools/ptools-local/pgdbs/user/sorghumcyc/1.0/reports/consistency-checker-report-2009-05-21_16-17-10.txt