=====Checking all inverse links====

[Checking inverses under class  CCO]
[Checking inverses under class  Evidence]
[Checking inverses under class  People]
[Checking inverses under class  Proteins]
[Checking inverses under class  Reactions]
[Checking inverses under class  All-Genes]
[Checking inverses under class  Transcription-Units]
[Checking inverses under class  Compounds]
[Checking inverses under class  Enzymatic-Reactions]
[Checking inverses under class  Regulation]

===== Checking and removing any values from PATHWAY-LINKS that point to nonexistent frames ====


===== Checking modified protein links to eliminate nonexistent frames ====


===== Cross-referencing compounds and reactions ====


==== Calculating sub and super pathways ====

===== Finding missing sub pathway links ====


==== Checking for missing sub pathway links ====
Warning:ASPARTATESYN-PWY is completely contained within ASPARAGINE-BIOSYNTHESIS but is not listed in the SUB-PATHWAYS slot

Warning:HOMOCYSDEGR-PWY is completely contained within PWY-801 but is not listed in the SUB-PATHWAYS slot

Warning:PWY1F-467 is completely contained within PWY-1121 but is not listed in the SUB-PATHWAYS slot

Warning:PANTO-PWY is completely contained within PWY-4221 but is not listed in the SUB-PATHWAYS slot

Warning:PWY-5123 is completely contained within POLYISOPRENSYN-PWY but is not listed in the SUB-PATHWAYS slot

Warning:PWY-5122 is completely contained within PWY-5123 but is not listed in the SUB-PATHWAYS slot

Warning:PWY-5123 is completely contained within PWY-5121 but is not listed in the SUB-PATHWAYS slot

Warning:GLYSYN-PWY is completely contained within 1CMET2-PWY but is not listed in the SUB-PATHWAYS slot

Warning:GLYSYN-PWY is completely contained within PWY-2201 but is not listed in the SUB-PATHWAYS slot

Warning:GLYSYN-PWY is completely contained within PWY-3841 but is not listed in the SUB-PATHWAYS slot

Warning:PWY0-662 is completely contained within P1-PWY but is not listed in the SUB-PATHWAYS slot

Warning:ARGDEG-III-PWY is completely contained within POLYAMINSYN3-PWY but is not listed in the SUB-PATHWAYS slot

Warning:PWY0-823 is completely contained within POLYAMSYN-PWY but is not listed in the SUB-PATHWAYS slot

Warning:PWY-1141 is completely contained within CAROTENOID-PWY but is not listed in the SUB-PATHWAYS slot

Warning:PWY-4001 is completely contained within ASPARAGINE-DEG1-PWY but is not listed in the SUB-PATHWAYS slot

Warning:ASPARTATESYN-PWY is completely contained within GLUTAMINEFUM-PWY but is not listed in the SUB-PATHWAYS slot

Warning:GLUTSYN-PWY is completely contained within GLUTAMINEFUM-PWY but is not listed in the SUB-PATHWAYS slot

Warning:GLUGLNSYN-PWY is completely contained within PWY-3282 but is not listed in the SUB-PATHWAYS slot

Warning:PWY-4341 is completely contained within PWY-3282 but is not listed in the SUB-PATHWAYS slot

Warning:GLNSYN-PWY is completely contained within PWY-3282 but is not listed in the SUB-PATHWAYS slot

Warning:GLNSYN-PWY is completely contained within PWY-381 but is not listed in the SUB-PATHWAYS slot

Warning:PWY-5340 is completely contained within SO4ASSIM-PWY but is not listed in the SUB-PATHWAYS slot

Warning:P21-PWY is completely contained within NONOXIPENT-PWY but is not listed in the SUB-PATHWAYS slot

Warning:PWY-1881 is completely contained within ANARESPDON-PWY but is not listed in the SUB-PATHWAYS slot


==Done checking all the links==
The report from this consistency checker run can be found at
C:\Documents and Settings\dharmawd\Application Data\ptools-local\pgdbs\user\ricecyc\2.0.1.1.3\reports\consistency-checker-report-2010-02-28_09-05-41.txt