MaizeCyc v 2.0
==============

The 2.0/ directory includes input files, data files, reports, and other insightful data for recreating maizecyc 2.0/
and/or that were obtained from quering this resource. All files in this directory are also embedded in the file named/ 
maizecyc_v2_0.zip for simple download.

Included in this directory are the following bioPAX and SBML dump files for maizecyc 2.0:

maizecyc_v2_biopax_level2.owl
maizecyc_v2_biopax_level3.owl
maizecyc_v2_sbml.xml

The above files are also included in the data/ directory within maizecyc_v2_0.zip
If you have problem downloading them directly on your browser, you could try downloading (and decompressing)/
maizecyc_v2_0.zip

As of Pathway Tools version 14.5 (2010), frame names for all genes begin with “G,” and end with a unique number,/
as opposed to having the gene frame name be the same as the gene unique identifier (Gramene gene-ids in this case)/
that was provided in the input PathoLogic-format file (as it was done prior to v14.5). Therefore, we are providing the/
above gene-id mappings file to convert internal maizecyc-db-ids into gramene-gene-ids and viceversa. 

maizecyc_v2_gene_id_mappings.txt

Using the above mappings file, provided below is the flat dump pathways file for maizecyc 2.0:

maizecyc_v2_pwy.txt

Compared with the beta version of maizecyc, here are lists of pathways that are new in 2.0 or were deleted from/
beta_1.2.1.1: 
 
maizecyc_v2_new_pathways.txt
maizecyc_v2_deleted_pathways.txt

Provided is also a list of compounds in maizecyc 2.0:

maizecyc_v2_compounds.txt