;;;      ---  Parse Results for Zea mays  ---
;;;
;;; This report summarizes the findings of the PathoLogic parser for
;;; the annotation files for all new genetic elements.  Through
;;; inspection of this report, the user can tell whether features of major 
;;; importance were not recognized, possibly due to syntax errors or other
;;; problems in the annotation files.
;;;
;;; If you want to change annotation file(s) to improve their parsability, 
;;; update the files, reinitialize the KB, and re-run the Build.  If you want
;;; to avoid having to reinitialize in the future, use the Trial Parse 
;;; command until you are satisfied with the parse results, and only then
;;; Build.


;;; -----------------------------------------------------------

;;; Parsing results for annotation file:
;;;        /Users/liya/liya/gramene/pathway/ptools/ptools-local/pgdbs/user/maizecyc/1.0/input/chr_UNKNOWN.pf

;;;
;;; The annotation file used by the parser is:
;;; /Users/liya/liya/gramene/pathway/ptools/ptools-local/pgdbs/user/maizecyc/1.0/input/chr_UNKNOWN.pf
gene-IDs :                       392
gene-name :                      392
gene-startbase :                 392
gene-endbase :                   392
gene-product-type :              392
  gene-Proteins :                  392
  gene-tRNAs :                       0
  gene-rRNAs :                       0
  gene-snRNAs :                      0
  gene-miscRNAs :                    0
product-IDs :                      0 [cannot be supplied in Genbank files]
product-names :                  392
product-synonyms :                 0 [cannot be supplied in Genbank files]
total EC numbers :                17
  genes with 1 EC number :          15
  genes with >1 EC numbers :         2
total GO terms linked to reactions :      15
  genes with 1 GO term linked to reactions :      11
  genes with >1 GO terms linked to reactions :       2
gene-products:
  hypothetical :                     0
  predicted :                        0
  putative :                         0
genes with synonyms :              0

;;; -----------------------------------------------------------

;;; Parsing results for annotation file:
;;;        /Users/liya/liya/gramene/pathway/ptools/ptools-local/pgdbs/user/maizecyc/1.0/input/chr_10.pf

;;;
;;; The annotation file used by the parser is:
;;; /Users/liya/liya/gramene/pathway/ptools/ptools-local/pgdbs/user/maizecyc/1.0/input/chr_10.pf
gene-IDs :                      7636
gene-name :                     7636
gene-startbase :                7636
gene-endbase :                  7636
gene-product-type :             7636
  gene-Proteins :                 7636
  gene-tRNAs :                       0
  gene-rRNAs :                       0
  gene-snRNAs :                      0
  gene-miscRNAs :                    0
product-IDs :                      0 [cannot be supplied in Genbank files]
product-names :                 7636
product-synonyms :                 0 [cannot be supplied in Genbank files]
total EC numbers :               697
  genes with 1 EC number :         531
  genes with >1 EC numbers :       121
total GO terms linked to reactions :     595
  genes with 1 GO term linked to reactions :     387
  genes with >1 GO terms linked to reactions :     124
gene-products:
  hypothetical :                     0
  predicted :                        0
  putative :                         0
genes with synonyms :              0

;;; -----------------------------------------------------------

;;; Parsing results for annotation file:
;;;        /Users/liya/liya/gramene/pathway/ptools/ptools-local/pgdbs/user/maizecyc/1.0/input/chr_9.pf

;;;
;;; The annotation file used by the parser is:
;;; /Users/liya/liya/gramene/pathway/ptools/ptools-local/pgdbs/user/maizecyc/1.0/input/chr_9.pf
gene-IDs :                      8426
gene-name :                     8426
gene-startbase :                8426
gene-endbase :                  8426
gene-product-type :             8426
  gene-Proteins :                 8426
  gene-tRNAs :                       0
  gene-rRNAs :                       0
  gene-snRNAs :                      0
  gene-miscRNAs :                    0
product-IDs :                      0 [cannot be supplied in Genbank files]
product-names :                 8426
product-synonyms :                 0 [cannot be supplied in Genbank files]
total EC numbers :               749
  genes with 1 EC number :         594
  genes with >1 EC numbers :       109
total GO terms linked to reactions :     629
  genes with 1 GO term linked to reactions :     423
  genes with >1 GO terms linked to reactions :     133
gene-products:
  hypothetical :                     0
  predicted :                        0
  putative :                         0
genes with synonyms :              0

;;; -----------------------------------------------------------

;;; Parsing results for annotation file:
;;;        /Users/liya/liya/gramene/pathway/ptools/ptools-local/pgdbs/user/maizecyc/1.0/input/chr_8.pf

;;;
;;; The annotation file used by the parser is:
;;; /Users/liya/liya/gramene/pathway/ptools/ptools-local/pgdbs/user/maizecyc/1.0/input/chr_8.pf
gene-IDs :                      9520
gene-name :                     9520
gene-startbase :                9520
gene-endbase :                  9520
gene-product-type :             9520
  gene-Proteins :                 9520
  gene-tRNAs :                       0
  gene-rRNAs :                       0
  gene-snRNAs :                      0
  gene-miscRNAs :                    0
product-IDs :                      0 [cannot be supplied in Genbank files]
product-names :                 9520
product-synonyms :                 0 [cannot be supplied in Genbank files]
total EC numbers :               867
  genes with 1 EC number :         665
  genes with >1 EC numbers :       137
total GO terms linked to reactions :     853
  genes with 1 GO term linked to reactions :     526
  genes with >1 GO terms linked to reactions :     191
gene-products:
  hypothetical :                     0
  predicted :                        0
  putative :                         0
genes with synonyms :              0

;;; -----------------------------------------------------------

;;; Parsing results for annotation file:
;;;        /Users/liya/liya/gramene/pathway/ptools/ptools-local/pgdbs/user/maizecyc/1.0/input/chr_7.pf

;;;
;;; The annotation file used by the parser is:
;;; /Users/liya/liya/gramene/pathway/ptools/ptools-local/pgdbs/user/maizecyc/1.0/input/chr_7.pf
gene-IDs :                      8579
gene-name :                     8579
gene-startbase :                8579
gene-endbase :                  8579
gene-product-type :             8579
  gene-Proteins :                 8579
  gene-tRNAs :                       0
  gene-rRNAs :                       0
  gene-snRNAs :                      0
  gene-miscRNAs :                    0
product-IDs :                      0 [cannot be supplied in Genbank files]
product-names :                 8579
product-synonyms :                 0 [cannot be supplied in Genbank files]
total EC numbers :               738
  genes with 1 EC number :         596
  genes with >1 EC numbers :       105
total GO terms linked to reactions :     675
  genes with 1 GO term linked to reactions :     436
  genes with >1 GO terms linked to reactions :     142
gene-products:
  hypothetical :                     0
  predicted :                        0
  putative :                         0
genes with synonyms :              0

;;; -----------------------------------------------------------

;;; Parsing results for annotation file:
;;;        /Users/liya/liya/gramene/pathway/ptools/ptools-local/pgdbs/user/maizecyc/1.0/input/chr_6.pf

;;;
;;; The annotation file used by the parser is:
;;; /Users/liya/liya/gramene/pathway/ptools/ptools-local/pgdbs/user/maizecyc/1.0/input/chr_6.pf
gene-IDs :                      9077
gene-name :                     9077
gene-startbase :                9077
gene-endbase :                  9077
gene-product-type :             9077
  gene-Proteins :                 9077
  gene-tRNAs :                       0
  gene-rRNAs :                       0
  gene-snRNAs :                      0
  gene-miscRNAs :                    0
product-IDs :                      0 [cannot be supplied in Genbank files]
product-names :                 9077
product-synonyms :                 0 [cannot be supplied in Genbank files]
total EC numbers :               825
  genes with 1 EC number :         624
  genes with >1 EC numbers :       129
total GO terms linked to reactions :     705
  genes with 1 GO term linked to reactions :     452
  genes with >1 GO terms linked to reactions :     140
gene-products:
  hypothetical :                     0
  predicted :                        0
  putative :                         0
genes with synonyms :              0

;;; -----------------------------------------------------------

;;; Parsing results for annotation file:
;;;        /Users/liya/liya/gramene/pathway/ptools/ptools-local/pgdbs/user/maizecyc/1.0/input/chr_5.pf

;;;
;;; The annotation file used by the parser is:
;;; /Users/liya/liya/gramene/pathway/ptools/ptools-local/pgdbs/user/maizecyc/1.0/input/chr_5.pf
gene-IDs :                     11675
gene-name :                    11675
gene-startbase :               11675
gene-endbase :                 11675
gene-product-type :            11675
  gene-Proteins :                11675
  gene-tRNAs :                       0
  gene-rRNAs :                       0
  gene-snRNAs :                      0
  gene-miscRNAs :                    0
product-IDs :                      0 [cannot be supplied in Genbank files]
product-names :                11675
product-synonyms :                 0 [cannot be supplied in Genbank files]
total EC numbers :              1169
  genes with 1 EC number :         869
  genes with >1 EC numbers :       192
total GO terms linked to reactions :     896
  genes with 1 GO term linked to reactions :     583
  genes with >1 GO terms linked to reactions :     190
gene-products:
  hypothetical :                     0
  predicted :                        0
  putative :                         0
genes with synonyms :              0

;;; -----------------------------------------------------------

;;; Parsing results for annotation file:
;;;        /Users/liya/liya/gramene/pathway/ptools/ptools-local/pgdbs/user/maizecyc/1.0/input/chr_4.pf

;;;
;;; The annotation file used by the parser is:
;;; /Users/liya/liya/gramene/pathway/ptools/ptools-local/pgdbs/user/maizecyc/1.0/input/chr_4.pf
gene-IDs :                     12499
gene-name :                    12499
gene-startbase :               12499
gene-endbase :                 12499
gene-product-type :            12499
  gene-Proteins :                12499
  gene-tRNAs :                       0
  gene-rRNAs :                       0
  gene-snRNAs :                      0
  gene-miscRNAs :                    0
product-IDs :                      0 [cannot be supplied in Genbank files]
product-names :                12499
product-synonyms :                 0 [cannot be supplied in Genbank files]
total EC numbers :              1006
  genes with 1 EC number :         807
  genes with >1 EC numbers :       141
total GO terms linked to reactions :     863
  genes with 1 GO term linked to reactions :     572
  genes with >1 GO terms linked to reactions :     174
gene-products:
  hypothetical :                     0
  predicted :                        0
  putative :                         0
genes with synonyms :              0

;;; -----------------------------------------------------------

;;; Parsing results for annotation file:
;;;        /Users/liya/liya/gramene/pathway/ptools/ptools-local/pgdbs/user/maizecyc/1.0/input/chr_3.pf

;;;
;;; The annotation file used by the parser is:
;;; /Users/liya/liya/gramene/pathway/ptools/ptools-local/pgdbs/user/maizecyc/1.0/input/chr_3.pf
gene-IDs :                     11523
gene-name :                    11523
gene-startbase :               11523
gene-endbase :                 11523
gene-product-type :            11523
  gene-Proteins :                11523
  gene-tRNAs :                       0
  gene-rRNAs :                       0
  gene-snRNAs :                      0
  gene-miscRNAs :                    0
product-IDs :                      0 [cannot be supplied in Genbank files]
product-names :                11523
product-synonyms :                 0 [cannot be supplied in Genbank files]
total EC numbers :               964
  genes with 1 EC number :         773
  genes with >1 EC numbers :       140
total GO terms linked to reactions :     913
  genes with 1 GO term linked to reactions :     593
  genes with >1 GO terms linked to reactions :     191
gene-products:
  hypothetical :                     0
  predicted :                        0
  putative :                         0
genes with synonyms :              0

;;; -----------------------------------------------------------

;;; Parsing results for annotation file:
;;;        /Users/liya/liya/gramene/pathway/ptools/ptools-local/pgdbs/user/maizecyc/1.0/input/chr_2.pf

;;;
;;; The annotation file used by the parser is:
;;; /Users/liya/liya/gramene/pathway/ptools/ptools-local/pgdbs/user/maizecyc/1.0/input/chr_2.pf
gene-IDs :                     13239
gene-name :                    13239
gene-startbase :               13239
gene-endbase :                 13239
gene-product-type :            13239
  gene-Proteins :                13239
  gene-tRNAs :                       0
  gene-rRNAs :                       0
  gene-snRNAs :                      0
  gene-miscRNAs :                    0
product-IDs :                      0 [cannot be supplied in Genbank files]
product-names :                13239
product-synonyms :                 0 [cannot be supplied in Genbank files]
total EC numbers :              1159
  genes with 1 EC number :         899
  genes with >1 EC numbers :       168
total GO terms linked to reactions :    1054
  genes with 1 GO term linked to reactions :     684
  genes with >1 GO terms linked to reactions :     225
gene-products:
  hypothetical :                     0
  predicted :                        0
  putative :                         0
genes with synonyms :              0

;;; -----------------------------------------------------------

;;; Parsing results for annotation file:
;;;        /Users/liya/liya/gramene/pathway/ptools/ptools-local/pgdbs/user/maizecyc/1.0/input/chr_1.pf

;;;
;;; The annotation file used by the parser is:
;;; /Users/liya/liya/gramene/pathway/ptools/ptools-local/pgdbs/user/maizecyc/1.0/input/chr_1.pf
gene-IDs :                     16188
gene-name :                    16188
gene-startbase :               16188
gene-endbase :                 16188
gene-product-type :            16188
  gene-Proteins :                16188
  gene-tRNAs :                       0
  gene-rRNAs :                       0
  gene-snRNAs :                      0
  gene-miscRNAs :                    0
product-IDs :                      0 [cannot be supplied in Genbank files]
product-names :                16188
product-synonyms :                 0 [cannot be supplied in Genbank files]
total EC numbers :              1529
  genes with 1 EC number :        1188
  genes with >1 EC numbers :       226
total GO terms linked to reactions :    1292
  genes with 1 GO term linked to reactions :     865
  genes with >1 GO terms linked to reactions :     263
gene-products:
  hypothetical :                     0
  predicted :                        0
  putative :                         0
genes with synonyms :              0