#
#
# Authors:
# Pankaj Jaiswal
# Liya Ren
# Palitha Dharmawardhana
# Doreen Ware
#
# Please see the license agreement regarding the use of and distribution of this file.
# The format of this file is defined at http://bioinformatics.ai.sri.com/ptools/flatfile-format.html .
#
# Species: Brachypodium distachyon
# Database: BrachyCyc
# Version: 2.0.1.1
# File Name: pathways.dat
# Date and time generated: June 18, 2013, 14:28:07
#
UNIQUE-ID - PWY-2261
TYPES - Detoxification
COMMON-NAME - ascorbate glutathione cycle
CITATIONS - :EV-COMP-AINF:3497824357:liya
PREDECESSORS - (GLUTATHIONE-REDUCT-NADPH-RXN 1.8.5.1-RXN)
PREDECESSORS - (RXN-3521 RXN-3522)
PREDECESSORS - (RXN-3522 RXN-3541)
PREDECESSORS - (RXN-3523 RXN-3521)
PREDECESSORS - (RXN-3523 RXN-3541)
PREDECESSORS - (1.8.5.1-RXN RXN-3523)
PREDECESSORS - (RXN-3521 1.8.5.1-RXN)
PREDECESSORS - (RXN-3541 1.8.5.1-RXN)
PRIMARIES - (RXN-3541 (ASCORBATE) (CPD-318))
PRIMARIES - (RXN-3523 (CPD-318) (L-DEHYDRO-ASCORBATE))
PRIMARIES - (RXN-3522 (CPD-318) (ASCORBATE))
PRIMARIES - (RXN-3521 (ASCORBATE) (CPD-318))
PRIMARIES - (GLUTATHIONE-REDUCT-NADPH-RXN (OXIDIZED-GLUTATHIONE) (GLUTATHIONE))
PRIMARIES - (1.8.5.1-RXN (L-DEHYDRO-ASCORBATE) (ASCORBATE))
PRIMARIES - (1.6.5.4-RXN (CPD-318) (ASCORBATE))
PRIMARIES - (L-ASCORBATE-PEROXIDASE-RXN (ASCORBATE) (L-DEHYDRO-ASCORBATE))
REACTION-LAYOUT - (RXN-3541 (:LEFT-PRIMARIES ASCORBATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-318))
REACTION-LAYOUT - (RXN-3523 (:LEFT-PRIMARIES CPD-318) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-DEHYDRO-ASCORBATE ASCORBATE))
REACTION-LAYOUT - (RXN-3522 (:LEFT-PRIMARIES CPD-318) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ASCORBATE))
REACTION-LAYOUT - (RXN-3521 (:LEFT-PRIMARIES ASCORBATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-318))
REACTION-LAYOUT - (GLUTATHIONE-REDUCT-NADPH-RXN (:LEFT-PRIMARIES GLUTATHIONE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES OXIDIZED-GLUTATHIONE))
REACTION-LAYOUT - (1.8.5.1-RXN (:LEFT-PRIMARIES GLUTATHIONE L-DEHYDRO-ASCORBATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ASCORBATE OXIDIZED-GLUTATHIONE))
REACTION-LIST - RXN-3541
REACTION-LIST - RXN-3523
REACTION-LIST - RXN-3522
REACTION-LIST - RXN-3521
REACTION-LIST - GLUTATHIONE-REDUCT-NADPH-RXN
REACTION-LIST - 1.8.5.1-RXN
SYNONYMS - removal of H2O2
SYNONYMS - hydrogen peroxide detoxification
//
UNIQUE-ID - DETOX1-PWY
TYPES - Detoxification
COMMON-NAME - removal of superoxide radicals
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |caspi|
CREDITS - O-18
CREDITS - |riley|
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |hartmut|
PREDECESSORS - (SUPEROX-DISMUT-RXN)
PREDECESSORS - (CATAL-RXN SUPEROX-DISMUT-RXN)
PRIMARIES - (SUPEROX-DISMUT-RXN (SUPER-OXIDE) (HYDROGEN-PEROXIDE))
PRIMARIES - (CATAL-RXN (HYDROGEN-PEROXIDE) (OXYGEN-MOLECULE))
REACTION-LAYOUT - (CATAL-RXN (:LEFT-PRIMARIES HYDROGEN-PEROXIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OXYGEN-MOLECULE))
REACTION-LAYOUT - (SUPEROX-DISMUT-RXN (:LEFT-PRIMARIES SUPER-OXIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OXYGEN-MOLECULE HYDROGEN-PEROXIDE))
REACTION-LIST - CATAL-RXN
REACTION-LIST - SUPEROX-DISMUT-RXN
//
UNIQUE-ID - CYANCAT-PWY
TYPES - NITROGEN-DEG
TYPES - Detoxification
COMMON-NAME - cyanate degradation
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - O-18
CREDITS - |riley|
CREDITS - SRI
CREDITS - |keseler|
KEY-REACTIONS - R524-RXN
PREDECESSORS - (RXN0-5224 RXN0-5222)
PREDECESSORS - (RXN0-5222 R524-RXN)
PRIMARIES - (RXN0-5222 (CARBAMATE) (CARBON-DIOXIDE))
REACTION-LAYOUT - (R524-RXN (:LEFT-PRIMARIES HCO3 CPD-69) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CARBON-DIOXIDE CARBAMATE))
REACTION-LAYOUT - (RXN0-5224 (:LEFT-PRIMARIES CARBON-DIOXIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HCO3))
REACTION-LAYOUT - (RXN0-5222 (:LEFT-PRIMARIES CARBAMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CARBON-DIOXIDE))
REACTION-LIST - R524-RXN
REACTION-LIST - RXN0-5224
REACTION-LIST - RXN0-5222
SYNONYMS - cyanate catabolism
//
UNIQUE-ID - ASPSYNII-PWY
TYPES - ASPARAGINE-SYN
TYPES - Cyanide-Detoxification
TYPES - Other-Degradation
COMMON-NAME - cyanide detoxification
CITATIONS - :EV-COMP-AINF:3497824356:liya
PREDECESSORS - (3.5.5.4-RXN L-3-CYANOALANINE-SYNTHASE-RXN)
PREDECESSORS - (3-CYANOALANINE-HYDRATASE-RXN L-3-CYANOALANINE-SYNTHASE-RXN)
PRIMARIES - (3.5.5.4-RXN (CPD-603) (L-ASPARTATE))
REACTION-LAYOUT - (3.5.5.4-RXN (:LEFT-PRIMARIES CPD-603) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-ASPARTATE))
REACTION-LAYOUT - (3-CYANOALANINE-HYDRATASE-RXN (:LEFT-PRIMARIES ASN) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CPD-603))
REACTION-LAYOUT - (L-3-CYANOALANINE-SYNTHASE-RXN (:LEFT-PRIMARIES HCN CYS) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-603))
REACTION-LIST - 3.5.5.4-RXN
REACTION-LIST - 3-CYANOALANINE-HYDRATASE-RXN
REACTION-LIST - L-3-CYANOALANINE-SYNTHASE-RXN
SYNONYMS - β-cyanoalanine biosynthesis
SYNONYMS - asparagine biosynthesis II
//
UNIQUE-ID - PWY-724
TYPES - Amino-Acid-Biosynthesis
TYPES - Super-Pathways
COMMON-NAME - superpathway of lysine, threonine and methionine biosynthesis II
PREDECESSORS - PWY-5097
PREDECESSORS - (HOMOSERKIN-RXN HOMOSERDEHYDROG-RXN)
PREDECESSORS - HOMOSERSYN-PWY
PREDECESSORS - PWY-702
PREDECESSORS - HOMOSER-THRESYN-PWY
REACTION-LAYOUT - (PWY-5097 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (HOMOSERSYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (PWY-702 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (HOMOSER-THRESYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LIST - PWY-5097
REACTION-LIST - HOMOSERSYN-PWY
REACTION-LIST - PWY-702
REACTION-LIST - HOMOSER-THRESYN-PWY
SUB-PATHWAYS - PWY-5097
SUB-PATHWAYS - HOMOSERSYN-PWY
SUB-PATHWAYS - PWY-702
SUB-PATHWAYS - HOMOSER-THRESYN-PWY
SYNONYMS - aspartate super pathway
//
UNIQUE-ID - PWY4FS-5
TYPES - Super-Pathways
COMMON-NAME - superpathway of phosphatidylcholine biosynthesis
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |zhang|
PREDECESSORS - PWY4FS-4
PREDECESSORS - PWY4FS-3
PREDECESSORS - PWY4FS-2
PREDECESSORS - PWY3O-450
REACTION-LAYOUT - (PWY4FS-4 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (PWY4FS-3 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (PWY4FS-2 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (PWY3O-450 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LIST - PWY4FS-4
REACTION-LIST - PWY4FS-3
REACTION-LIST - PWY4FS-2
REACTION-LIST - PWY3O-450
SUB-PATHWAYS - PWY4FS-4
SUB-PATHWAYS - PWY4FS-3
SUB-PATHWAYS - PWY4FS-2
SUB-PATHWAYS - PWY3O-450
//
UNIQUE-ID - PWY-5053
TYPES - GIBBERELLIN-SYN
TYPES - Super-Pathways
COMMON-NAME - superpathway of GA12 biosynthesis
PATHWAY-LINKS - (CPD1F-95 PWY-5052)
PREDECESSORS - (1.14.13.78-RXN 4.2.3.19-RXN)
PREDECESSORS - (4.2.3.19-RXN 1.14.13.78-RXN)
PREDECESSORS - PWY-5034
PREDECESSORS - PWY-5032
REACTION-LAYOUT - (PWY-5034 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (PWY-5032 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LIST - PWY-5034
REACTION-LIST - PWY-5032
SUB-PATHWAYS - PWY-5034
SUB-PATHWAYS - PWY-5032
//
UNIQUE-ID - PWY-4361
TYPES - Super-Pathways
TYPES - METHIONINE-SYN
COMMON-NAME - methionine salvage pathway
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - |caspi|
CREDITS - SRI
CREDITS - |krieger|
CREDITS - O-18
CREDITS - |pellegrini-toole|
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |tissier|
PATHWAY-LINKS - (MET SAM-PWY)
PATHWAY-LINKS - (5-METHYLTHIOADENOSINE ARGSPECAT-PWY BSUBPOLYAMSYN-PWY)
PREDECESSORS - (R15-RXN R147-RXN)
PREDECESSORS - (R147-RXN R83-RXN)
PREDECESSORS - (R145-RXN 5.3.1.23-RXN)
PREDECESSORS - (5.3.1.23-RXN 5-METHYLTHIORIBOSE-KINASE-RXN)
PREDECESSORS - (5-METHYLTHIORIBOSE-KINASE-RXN METHYLTHIOADENOSINE-NUCLEOSIDASE-RXN)
PREDECESSORS - (R82-RXN R145-RXN)
PREDECESSORS - (R83-RXN R82-RXN)
PRIMARIES - (4.4.1.14-RXN (S-ADENOSYLMETHIONINE) (5-METHYLTHIOADENOSINE))
PRIMARIES - (R15-RXN (CPD-479) (MET))
PRIMARIES - (R147-RXN (CPD-85) (CPD-479))
PRIMARIES - (R83-RXN (2-HYDROXY-3-KETO-5-METHYLTHIO-1-PHOSPHOP) (CPD-85))
PRIMARIES - (R82-RXN (CPD-8999) (2-HYDROXY-3-KETO-5-METHYLTHIO-1-PHOSPHOP))
PRIMARIES - (R145-RXN (CPD-1063) (CPD-8999))
PRIMARIES - (5.3.1.23-RXN (CPD-444) (CPD-1063))
PRIMARIES - (5-METHYLTHIORIBOSE-KINASE-RXN (CPD-560) (CPD-444))
PRIMARIES - (S-ADENMETSYN-RXN (MET) (S-ADENOSYLMETHIONINE))
PRIMARIES - (METHYLTHIOADENOSINE-NUCLEOSIDASE-RXN (5-METHYLTHIOADENOSINE) (CPD-560))
PRIMARIES - (SPERMINE-SYNTHASE-RXN (S-ADENOSYLMETHIONINAMINE) (5-METHYLTHIOADENOSINE))
PRIMARIES - (SPERMIDINESYN-RXN (S-ADENOSYLMETHIONINAMINE) (5-METHYLTHIOADENOSINE))
REACTION-LAYOUT - (R15-RXN (:LEFT-PRIMARIES CPD-479) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MET))
REACTION-LAYOUT - (R147-RXN (:LEFT-PRIMARIES CPD-85) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-479))
REACTION-LAYOUT - (R83-RXN (:LEFT-PRIMARIES 2-HYDROXY-3-KETO-5-METHYLTHIO-1-PHOSPHOP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-85))
REACTION-LAYOUT - (R82-RXN (:LEFT-PRIMARIES CPD-8999) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-HYDROXY-3-KETO-5-METHYLTHIO-1-PHOSPHOP))
REACTION-LAYOUT - (5.3.1.23-RXN (:LEFT-PRIMARIES CPD-444) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-1063))
REACTION-LAYOUT - (R145-RXN (:LEFT-PRIMARIES CPD-1063) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8999))
REACTION-LAYOUT - (5-METHYLTHIORIBOSE-KINASE-RXN (:LEFT-PRIMARIES CPD-560) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-444))
REACTION-LAYOUT - (METHYLTHIOADENOSINE-NUCLEOSIDASE-RXN (:LEFT-PRIMARIES 5-METHYLTHIOADENOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-560))
REACTION-LIST - R15-RXN
REACTION-LIST - R147-RXN
REACTION-LIST - R83-RXN
REACTION-LIST - R82-RXN
REACTION-LIST - 5.3.1.23-RXN
REACTION-LIST - R145-RXN
REACTION-LIST - 5-METHYLTHIORIBOSE-KINASE-RXN
REACTION-LIST - METHYLTHIOADENOSINE-NUCLEOSIDASE-RXN
SYNONYMS - Yang cycle
SYNONYMS - methylthioadenosine recycling
SYNONYMS - methionine regeneration
SYNONYMS - methionine recycling
SYNONYMS - methylthioribose recycling
//
UNIQUE-ID - PENTOSE-P-PWY
TYPES - Pentose-Phosphate-Cycle
TYPES - Super-Pathways
COMMON-NAME - pentose phosphate pathway
CREDITS - O0-3
CREDITS - |ingraham|
PATHWAY-LINKS - (GLC-6-P PWY-842)
PREDECESSORS - OXIDATIVEPENT-PWY
PREDECESSORS - NONOXIPENT-PWY
PREDECESSORS - (RIBULP3EPIM-RXN 6PGLUCONDEHYDROG-RXN)
PREDECESSORS - (RIB5PISOM-RXN 6PGLUCONDEHYDROG-RXN)
REACTION-LAYOUT - (OXIDATIVEPENT-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (NONOXIPENT-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LIST - OXIDATIVEPENT-PWY
REACTION-LIST - NONOXIPENT-PWY
SUB-PATHWAYS - NONOXIPENT-PWY
SUB-PATHWAYS - OXIDATIVEPENT-PWY
SYNONYMS - pentose shunt
SYNONYMS - hexose monophosphate shunt
SYNONYMS - phosphogluconate pathway
SYNONYMS - superpathway of oxidative and non-oxidative branches of pentose phosphate pathway
//
UNIQUE-ID - PWY-3282
TYPES - Ammonia-Assimilation
TYPES - Super-Pathways
COMMON-NAME - ammonia assimilation cycle II
CITATIONS - :EV-COMP-AINF:3497824357:liya
PREDECESSORS - (GLUTAMATE-SYNTHASE-NADH-RXN GLUTAMINESYN-RXN)
PREDECESSORS - (GLUTAMATE-SYNTHASE-FERREDOXIN-RXN GLUTAMINESYN-RXN)
PRIMARIES - (GLUTAMATE-SYNTHASE-FERREDOXIN-RXN (GLN) (GLT))
PRIMARIES - (GLUTAMATE-SYNTHASE-NADH-RXN (GLN) (GLT))
PRIMARIES - (GLUTAMINESYN-RXN (GLT) (GLN))
REACTION-LAYOUT - (GLUTAMATE-SYNTHASE-FERREDOXIN-RXN (:LEFT-PRIMARIES GLT) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GLN))
REACTION-LAYOUT - (GLUTAMATE-SYNTHASE-NADH-RXN (:LEFT-PRIMARIES GLT) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GLN))
REACTION-LAYOUT - (GLUTAMINESYN-RXN (:LEFT-PRIMARIES GLT) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLN))
REACTION-LIST - GLUTAMATE-SYNTHASE-FERREDOXIN-RXN
REACTION-LIST - GLUTAMATE-SYNTHASE-NADH-RXN
REACTION-LIST - GLUTAMINESYN-RXN
SYNONYMS - glutamate synthase cycle
//
UNIQUE-ID - PWY-4765
TYPES - Cyclitols-Biosynthesis
TYPES - Super-Pathways
COMMON-NAME - superpathway of lipid-dependent phytate biosynthesis
PREDECESSORS - PWY-4562
PREDECESSORS - PWY-4541
REACTION-LAYOUT - (PWY-4562 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (PWY-4541 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LIST - PWY-4562
REACTION-LIST - PWY-4541
SUB-PATHWAYS - PWY-4562
SUB-PATHWAYS - PWY-4541
//
UNIQUE-ID - PWY-6277
TYPES - AIR-Biosynthesis
TYPES - Super-Pathways
COMMON-NAME - superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CITATIONS - :EV-COMP-AINF:3498595969:jaiswalp
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (PRPP PWY0-662 PWY0-661)
PATHWAY-LINKS - (5-PHOSPHORIBOSYL-5-AMINOIMIDAZOLE DENOVOPURINE2-PWY PWY-841 THISYN-PWY)
PREDECESSORS - PWY-6122
PREDECESSORS - PWY-6121
PREDECESSORS - (FGAMSYN-RXN GARTRANSFORMYL2-RXN)
PREDECESSORS - (GARTRANSFORMYL2-RXN GLYRIBONUCSYN-RXN)
PREDECESSORS - (GLYRIBONUCSYN-RXN PRPPAMIDOTRANS-RXN)
PREDECESSORS - (AIRS-RXN FGAMSYN-RXN)
PRIMARIES - (AMPSYN-RXN (ADENYLOSUCC) (AMP))
REACTION-LAYOUT - (PWY-6122 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (PWY-6121 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (GARTRANSFORMYL2-RXN (:LEFT-PRIMARIES 5-PHOSPHO-RIBOSYL-GLYCINEAMIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE))
REACTION-LAYOUT - (AIRS-RXN (:LEFT-PRIMARIES 5-PHOSPHORIBOSYL-N-FORMYLGLYCINEAMIDINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-PHOSPHORIBOSYL-5-AMINOIMIDAZOLE))
REACTION-LAYOUT - (FGAMSYN-RXN (:LEFT-PRIMARIES 5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-PHOSPHORIBOSYL-N-FORMYLGLYCINEAMIDINE))
REACTION-LAYOUT - (GLYRIBONUCSYN-RXN (:LEFT-PRIMARIES 5-P-BETA-D-RIBOSYL-AMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-PHOSPHO-RIBOSYL-GLYCINEAMIDE))
REACTION-LAYOUT - (PRPPAMIDOTRANS-RXN (:LEFT-PRIMARIES 5-P-BETA-D-RIBOSYL-AMINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PRPP))
REACTION-LIST - PWY-6122
REACTION-LIST - PWY-6121
REACTION-LIST - GARTRANSFORMYL2-RXN
REACTION-LIST - AIRS-RXN
REACTION-LIST - FGAMSYN-RXN
REACTION-LIST - GLYRIBONUCSYN-RXN
REACTION-LIST - PRPPAMIDOTRANS-RXN
SUB-PATHWAYS - PWY-6121
//
UNIQUE-ID - PWY-5464
TYPES - Super-Pathways
TYPES - Energy-Metabolism
COMMON-NAME - superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |tissier|
PATHWAY-LINKS - (FRUCTOSE-6P PWY-621)
PREDECESSORS - (CITSYN-RXN RXN0-1133)
PREDECESSORS - PWY-5690
PREDECESSORS - (RXN0-1134 PEPDEPHOS-RXN)
PREDECESSORS - PWY-1042
PREDECESSORS - PYRUVDEHYD-PWY
PRIMARIES - (MALATE-DEH-RXN (MAL) (OXALACETIC_ACID))
PRIMARIES - (MALATE-DEHYDROGENASE-ACCEPTOR-RXN (MAL) (OXALACETIC_ACID))
PRIMARIES - (FUMHYDR-RXN (FUM) (MAL))
PRIMARIES - (SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN (SUC) (FUM))
PRIMARIES - (SUCCCOASYN-RXN (SUC-COA) (SUC))
PRIMARIES - (2OXOGLUTARATEDEH-RXN (2-KETOGLUTARATE) (SUC-COA))
PRIMARIES - (ISOCITDEH-RXN (THREO-DS-ISO-CITRATE) (2-KETOGLUTARATE))
PRIMARIES - (ACONITATEHYDR-RXN (CIS-ACONITATE) (THREO-DS-ISO-CITRATE))
PRIMARIES - (ACONITATEDEHYDR-RXN (CIT) (CIS-ACONITATE))
PRIMARIES - (CITSYN-RXN (OXALACETIC_ACID ACETYL-COA) (CIT))
PRIMARIES - (6PFRUCTPHOS-RXN (FRUCTOSE-6P) (FRUCTOSE-16-DIPHOSPHATE))
PRIMARIES - (2.7.1.90-RXN (FRUCTOSE-6P) (FRUCTOSE-16-DIPHOSPHATE))
PRIMARIES - (F16ALDOLASE-RXN (FRUCTOSE-16-DIPHOSPHATE) (GAP DIHYDROXY-ACETONE-PHOSPHATE))
PRIMARIES - (TRIOSEPISOMERIZATION-RXN (DIHYDROXY-ACETONE-PHOSPHATE) (GAP))
PRIMARIES - (GAPOXNPHOSPHN-RXN (GAP) (DPG))
PRIMARIES - (PHOSGLYPHOS-RXN (DPG) (G3P))
PRIMARIES - (1.2.1.9-RXN (GAP) (G3P))
PRIMARIES - (3PGAREARR-RXN (G3P) (2-PG))
PRIMARIES - (2PGADEHYDRAT-RXN (2-PG) (PHOSPHO-ENOL-PYRUVATE))
PRIMARIES - (PEPDEPHOS-RXN (PHOSPHO-ENOL-PYRUVATE) (PYRUVATE))
PRIMARIES - (RXN0-1132 (|Pyruvate-dehydrogenase-dihydrolipoate|) (|Pyruvate-dehydrogenase-lipoate|))
PRIMARIES - (RXN0-1134 (|Pyruvate-dehydrogenase-lipoate| PYRUVATE) (|Pyruvate-dehydrogenase-acetylDHlipoyl|))
PRIMARIES - (RXN0-1133 (|Pyruvate-dehydrogenase-acetylDHlipoyl|) (|Pyruvate-dehydrogenase-dihydrolipoate| ACETYL-COA))
REACTION-LAYOUT - (PWY-5690 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (PWY-1042 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (PYRUVDEHYD-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LIST - PWY-5690
REACTION-LIST - PWY-1042
REACTION-LIST - PYRUVDEHYD-PWY
SUB-PATHWAYS - PWY-5690
SUB-PATHWAYS - PWY-1042
SUB-PATHWAYS - PYRUVDEHYD-PWY
//
UNIQUE-ID - PWY-3801
TYPES - SUCROSE-DEG
TYPES - Super-Pathways
COMMON-NAME - sucrose degradation to ethanol and lactate (anaerobic)
PREDECESSORS - PWY-5486
PREDECESSORS - PWY-5481
PREDECESSORS - PWY-5484
PREDECESSORS - (PEPDEPHOS-RXN 2PGADEHYDRAT-RXN)
PREDECESSORS - (RXN-6161 PEPDEPHOS-RXN)
PREDECESSORS - (L-LACTATE-DEHYDROGENASE-RXN PEPDEPHOS-RXN)
PREDECESSORS - (GAPOXNPHOSPHN-RXN TRIOSEPISOMERIZATION-RXN)
PREDECESSORS - (TRIOSEPISOMERIZATION-RXN F16ALDOLASE-RXN)
PREDECESSORS - (PHOSGLYPHOS-RXN GAPOXNPHOSPHN-RXN)
PREDECESSORS - (GAPOXNPHOSPHN-RXN F16ALDOLASE-RXN)
PREDECESSORS - (F16ALDOLASE-RXN 6PFRUCTPHOS-RXN)
PREDECESSORS - (GLUC1PURIDYLTRANS-RXN SUCROSE-SYNTHASE-RXN)
PREDECESSORS - (SUCROSE-SYNTHASE-RXN)
PREDECESSORS - (FRUCTOKINASE-RXN SUCROSE-SYNTHASE-RXN)
PREDECESSORS - (6PFRUCTPHOS-RXN FRUCTOKINASE-RXN)
PREDECESSORS - (3PGAREARR-RXN PHOSGLYPHOS-RXN)
PREDECESSORS - (2PGADEHYDRAT-RXN 3PGAREARR-RXN)
PREDECESSORS - (ALCOHOL-DEHYDROG-RXN RXN-6161)
PREDECESSORS - (PHOSPHOGLUCMUT-RXN GLUC1PURIDYLTRANS-RXN)
PREDECESSORS - (6PFRUCTPHOS-RXN RXN-6182)
PREDECESSORS - (RXN-6182 PHOSPHOGLUCMUT-RXN)
PRIMARIES - (RXN-6182 (ALPHA-GLC-6-P) (FRUCTOSE-6P))
PRIMARIES - (PHOSPHOGLUCMUT-RXN (GLC-1-P) (ALPHA-GLC-6-P))
PRIMARIES - (PEPDEPHOS-RXN (PHOSPHO-ENOL-PYRUVATE) (PYRUVATE))
PRIMARIES - (L-LACTATE-DEHYDROGENASE-RXN (PYRUVATE) (L-LACTATE))
PRIMARIES - (PGLUCISOM-RXN (GLC-6-P) (FRUCTOSE-6P))
PRIMARIES - (ALCOHOL-DEHYDROG-RXN (ACETALD) (ETOH))
PRIMARIES - (RXN-6161 (PYRUVATE) (ACETALD))
PRIMARIES - (2PGADEHYDRAT-RXN (2-PG) (PHOSPHO-ENOL-PYRUVATE))
PRIMARIES - (3PGAREARR-RXN (G3P) (2-PG))
PRIMARIES - (TRIOSEPISOMERIZATION-RXN (DIHYDROXY-ACETONE-PHOSPHATE) (GAP))
PRIMARIES - (PHOSGLYPHOS-RXN (DPG) (G3P))
PRIMARIES - (GAPOXNPHOSPHN-RXN (GAP) (DPG))
PRIMARIES - (F16ALDOLASE-RXN (FRUCTOSE-16-DIPHOSPHATE) (DIHYDROXY-ACETONE-PHOSPHATE GAP))
PRIMARIES - (6PFRUCTPHOS-RXN (FRUCTOSE-6P) (FRUCTOSE-16-DIPHOSPHATE))
PRIMARIES - (FRUCTOKINASE-RXN (FRU) (FRUCTOSE-6P))
PRIMARIES - (GLUC1PURIDYLTRANS-RXN (UDP-GLUCOSE) (GLC-1-P))
PRIMARIES - (SUCROSE-SYNTHASE-RXN (SUCROSE) (FRU UDP-GLUCOSE))
REACTION-LAYOUT - (PWY-5486 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (PWY-5481 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (RXN-6182 (:LEFT-PRIMARIES ALPHA-GLC-6-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-6P))
REACTION-LAYOUT - (PHOSPHOGLUCMUT-RXN (:LEFT-PRIMARIES GLC-1-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALPHA-GLC-6-P))
REACTION-LAYOUT - (PEPDEPHOS-RXN (:LEFT-PRIMARIES PYRUVATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE))
REACTION-LAYOUT - (RXN-6161 (:LEFT-PRIMARIES PYRUVATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ACETALD))
REACTION-LAYOUT - (ALCOHOL-DEHYDROG-RXN (:LEFT-PRIMARIES ACETALD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ETOH))
REACTION-LAYOUT - (L-LACTATE-DEHYDROGENASE-RXN (:LEFT-PRIMARIES L-LACTATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PYRUVATE))
REACTION-LAYOUT - (2PGADEHYDRAT-RXN (:LEFT-PRIMARIES 2-PG) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE))
REACTION-LAYOUT - (3PGAREARR-RXN (:LEFT-PRIMARIES G3P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-PG))
REACTION-LAYOUT - (PHOSGLYPHOS-RXN (:LEFT-PRIMARIES G3P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DPG))
REACTION-LAYOUT - (GAPOXNPHOSPHN-RXN (:LEFT-PRIMARIES GAP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DPG))
REACTION-LAYOUT - (TRIOSEPISOMERIZATION-RXN (:LEFT-PRIMARIES GAP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DIHYDROXY-ACETONE-PHOSPHATE))
REACTION-LAYOUT - (F16ALDOLASE-RXN (:LEFT-PRIMARIES FRUCTOSE-16-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GAP DIHYDROXY-ACETONE-PHOSPHATE))
REACTION-LAYOUT - (6PFRUCTPHOS-RXN (:LEFT-PRIMARIES FRUCTOSE-6P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-16-DIPHOSPHATE))
REACTION-LAYOUT - (FRUCTOKINASE-RXN (:LEFT-PRIMARIES FRU) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-6P))
REACTION-LAYOUT - (GLUC1PURIDYLTRANS-RXN (:LEFT-PRIMARIES GLC-1-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES UDP-GLUCOSE))
REACTION-LAYOUT - (SUCROSE-SYNTHASE-RXN (:LEFT-PRIMARIES FRU UDP-GLUCOSE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES SUCROSE))
REACTION-LIST - PWY-5486
REACTION-LIST - PWY-5481
REACTION-LIST - RXN-6182
REACTION-LIST - PHOSPHOGLUCMUT-RXN
REACTION-LIST - PEPDEPHOS-RXN
REACTION-LIST - RXN-6161
REACTION-LIST - ALCOHOL-DEHYDROG-RXN
REACTION-LIST - L-LACTATE-DEHYDROGENASE-RXN
REACTION-LIST - 2PGADEHYDRAT-RXN
REACTION-LIST - 3PGAREARR-RXN
REACTION-LIST - PHOSGLYPHOS-RXN
REACTION-LIST - GAPOXNPHOSPHN-RXN
REACTION-LIST - TRIOSEPISOMERIZATION-RXN
REACTION-LIST - F16ALDOLASE-RXN
REACTION-LIST - 6PFRUCTPHOS-RXN
REACTION-LIST - FRUCTOKINASE-RXN
REACTION-LIST - GLUC1PURIDYLTRANS-RXN
REACTION-LIST - SUCROSE-SYNTHASE-RXN
SUB-PATHWAYS - PWY-5484
SUB-PATHWAYS - PWY-5486
SUB-PATHWAYS - PWY-5481
//
UNIQUE-ID - PWY4FS-8
TYPES - PhosphatidylglycerolBiosynthesis
TYPES - Super-Pathways
COMMON-NAME - phosphatidylglycerol biosynthesis II
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |zhang|
PREDECESSORS - (PGPPHOSPHA-RXN PHOSPHAGLYPSYN-RXN)
PREDECESSORS - (PHOSPHAGLYPSYN-RXN CDPDIGLYSYN-RXN)
PREDECESSORS - PWY-5667
PRIMARIES - (PHOSPHAGLYPSYN-RXN (CDPDIACYLGLYCEROL) (L-1-PHOSPHATIDYL-GLYCEROL-P))
PRIMARIES - (PGPPHOSPHA-RXN (L-1-PHOSPHATIDYL-GLYCEROL-P) (L-1-PHOSPHATIDYL-GLYCEROL))
REACTION-LAYOUT - (PGPPHOSPHA-RXN (:LEFT-PRIMARIES L-1-PHOSPHATIDYL-GLYCEROL-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-1-PHOSPHATIDYL-GLYCEROL))
REACTION-LAYOUT - (PHOSPHAGLYPSYN-RXN (:LEFT-PRIMARIES GLYCEROL-3P CDPDIACYLGLYCEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-1-PHOSPHATIDYL-GLYCEROL-P))
REACTION-LAYOUT - (PWY-5667 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LIST - PGPPHOSPHA-RXN
REACTION-LIST - PHOSPHAGLYPSYN-RXN
REACTION-LIST - PWY-5667
SUB-PATHWAYS - PWY-5667
//
UNIQUE-ID - BRANCHED-CHAIN-AA-SYN-PWY
TYPES - Amino-Acid-Biosynthesis
TYPES - Super-Pathways
COMMON-NAME - superpathway of leucine, valine, and isoleucine biosynthesis
PREDECESSORS - (2-ISOPROPYLMALATESYN-RXN DIHYDROXYISOVALDEHYDRAT-RXN)
PREDECESSORS - ILEUSYN-PWY
PREDECESSORS - VALSYN-PWY
PREDECESSORS - LEUSYN-PWY
REACTION-LAYOUT - (ILEUSYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (VALSYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (LEUSYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LIST - ILEUSYN-PWY
REACTION-LIST - VALSYN-PWY
REACTION-LIST - LEUSYN-PWY
SUB-PATHWAYS - VALSYN-PWY
SUB-PATHWAYS - ILEUSYN-PWY
SUB-PATHWAYS - LEUSYN-PWY
SYNONYMS - branched amino acid biosynthesis
//
UNIQUE-ID - PWY0-41
TYPES - Allantoin-degradation
TYPES - Super-Pathways
COMMON-NAME - allantoin degradation IV (anaerobic)
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - |caspi|
CREDITS - SRI
CREDITS - |keseler|
CREDITS - O-18
CREDITS - |pellegrini-toole|
HYPOTHETICAL-REACTIONS - CARBAMATE-KINASE-RXN
HYPOTHETICAL-REACTIONS - OXAMATE-CARBAMOYLTRANSFERASE-RXN
PATHWAY-LINKS - (S-ALLANTOIN (PWY-5044 . :INCOMING))
PATHWAY-LINKS - (G3P GLYCOLYSIS)
PREDECESSORS - (CARBAMATE-KINASE-RXN OXAMATE-CARBAMOYLTRANSFERASE-RXN)
PREDECESSORS - (OXAMATE-CARBAMOYLTRANSFERASE-RXN R165-RXN)
PREDECESSORS - (R165-RXN URUR-RXN)
PREDECESSORS - PWY-5698
PRIMARIES - (OXAMATE-CARBAMOYLTRANSFERASE-RXN (CPD-389) (OXAMATE CARBAMOYL-P))
REACTION-LAYOUT - (CARBAMATE-KINASE-RXN (:LEFT-PRIMARIES ATP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CARBAMOYL-P))
REACTION-LAYOUT - (OXAMATE-CARBAMOYLTRANSFERASE-RXN (:LEFT-PRIMARIES CARBAMOYL-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CPD-389))
REACTION-LAYOUT - (R165-RXN (:LEFT-PRIMARIES CPD-1091) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-389))
REACTION-LAYOUT - (PWY-5698 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LIST - CARBAMATE-KINASE-RXN
REACTION-LIST - OXAMATE-CARBAMOYLTRANSFERASE-RXN
REACTION-LIST - R165-RXN
REACTION-LIST - PWY-5698
SUB-PATHWAYS - PWY-5698
//
UNIQUE-ID - PWY-561
TYPES - Super-Pathways
TYPES - Energy-Metabolism
COMMON-NAME - superpathway of glyoxylate cycle
CITATIONS - :EV-COMP-AINF:3497824358:liya
PATHWAY-LINKS - (PHOSPHO-ENOL-PYRUVATE GLUCONEO-PWY)
PREDECESSORS - (FUMHYDR-RXN SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN)
PREDECESSORS - GLYOXYLATE-BYPASS
PREDECESSORS - (SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN ISOCIT-CLEAV-RXN)
PREDECESSORS - (MALATE-DEH-RXN FUMHYDR-RXN)
PREDECESSORS - (PEPCARBOXYKIN-RXN MALATE-DEH-RXN)
REACTION-LAYOUT - (MALATE-DEH-RXN (:LEFT-PRIMARIES MAL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OXALACETIC_ACID))
REACTION-LAYOUT - (PEPCARBOXYKIN-RXN (:LEFT-PRIMARIES OXALACETIC_ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE))
REACTION-LAYOUT - (SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN (:LEFT-PRIMARIES SUC) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FUM))
REACTION-LAYOUT - (FUMHYDR-RXN (:LEFT-PRIMARIES MAL) (:DIRECTION :R2L) (:RIGHT-PRIMARIES FUM))
REACTION-LAYOUT - (GLYOXYLATE-BYPASS (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LIST - MALATE-DEH-RXN
REACTION-LIST - PEPCARBOXYKIN-RXN
REACTION-LIST - SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN
REACTION-LIST - FUMHYDR-RXN
REACTION-LIST - GLYOXYLATE-BYPASS
SUB-PATHWAYS - GLYOXYLATE-BYPASS
//
UNIQUE-ID - PWY-5910
TYPES - DITERPENOID-SYN
TYPES - GGPP-Biosynthesis
TYPES - Super-Pathways
COMMON-NAME - superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate)
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (GERANYLGERANYL-PP 2.5.1.60-RXN RXN-3701 PWY-5660 PWY-5416 PWY-5063 PWY-2981 PWY-5032)
PREDECESSORS - (FARNESYLTRANSTRANSFERASE-RXN FPPSYN-RXN)
PREDECESSORS - PWY-5120
PREDECESSORS - PWY-5123
PREDECESSORS - PWY-922
REACTION-LAYOUT - (PWY-5120 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (PWY-5123 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (PWY-922 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LIST - PWY-5120
REACTION-LIST - PWY-5123
REACTION-LIST - PWY-922
SUB-PATHWAYS - PWY-5120
SUB-PATHWAYS - PWY-5123
SUB-PATHWAYS - PWY-922
SYNONYMS - GGPP biosynthesis
//
UNIQUE-ID - THISYNARA-PWY
TYPES - Super-Pathways
TYPES - Thiamine-Biosynthesis
COMMON-NAME - thiamine biosynthesis II
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - |dreher|
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |hartmut|
PREDECESSORS - (RXNQT-4301 RXNQT-4300)
PREDECESSORS - (THI-P-SYN-RXN RXNQT-4301)
PREDECESSORS - (THIAMIN-PYROPHOSPHOKINASE-RXN RXNQT-4191)
PREDECESSORS - (RXNQT-4191 THI-P-SYN-RXN)
PREDECESSORS - (PYRIMSYN3-RXN OHMETPYRKIN-RXN)
PREDECESSORS - (PYRIMSYN3-RXN PYRIMSYN1-RXN)
PREDECESSORS - (THI-P-SYN-RXN PYRIMSYN3-RXN)
REACTION-LAYOUT - (RXNQT-4301 (:LEFT-PRIMARIES CPDQT-400) (:DIRECTION :L2R) (:RIGHT-PRIMARIES THZ-P))
REACTION-LAYOUT - (RXNQT-4300 (:LEFT-PRIMARIES NAD CYS GLY) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPDQT-400))
REACTION-LAYOUT - (THIAMIN-PYROPHOSPHOKINASE-RXN (:LEFT-PRIMARIES THIAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES THIAMINE-PYROPHOSPHATE))
REACTION-LAYOUT - (RXNQT-4191 (:LEFT-PRIMARIES THIAMINE-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES THIAMINE))
REACTION-LAYOUT - (OHMETPYRKIN-RXN (:LEFT-PRIMARIES HMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AMINO-HYDROXYMETHYL-METHYL-PYR-P))
REACTION-LAYOUT - (PYRIMSYN1-RXN (:LEFT-PRIMARIES S-ADENOSYLMETHIONINE 5-PHOSPHORIBOSYL-5-AMINOIMIDAZOLE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AMINO-HYDROXYMETHYL-METHYL-PYR-P))
REACTION-LAYOUT - (PYRIMSYN3-RXN (:LEFT-PRIMARIES AMINO-HYDROXYMETHYL-METHYL-PYR-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP))
REACTION-LAYOUT - (THI-P-SYN-RXN (:LEFT-PRIMARIES AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP THZ-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES THIAMINE-P))
REACTION-LIST - RXNQT-4301
REACTION-LIST - RXNQT-4300
REACTION-LIST - THIAMIN-PYROPHOSPHOKINASE-RXN
REACTION-LIST - RXNQT-4191
REACTION-LIST - OHMETPYRKIN-RXN
REACTION-LIST - PYRIMSYN1-RXN
REACTION-LIST - PYRIMSYN3-RXN
REACTION-LIST - THI-P-SYN-RXN
SYNONYMS - thiamin biosynthesis
SYNONYMS - vitamin B1 biosynthesis
SYNONYMS - thiamine biosynthesis (plants)
//
UNIQUE-ID - PWY0-162
TYPES - Super-Pathways
TYPES - Pyrimidine-De-Novo-Biosyn
COMMON-NAME - pyrimidine ribonucleotides de novo biosynthesis
CREDITS - |caspi|
CREDITS - SRI
CREDITS - |arnaud|
PATHWAY-LINKS - (PRPP (|FRPP-Biosynthesis| . :INCOMING))
PATHWAY-LINKS - (CARBAMOYL-P ARGININE-SYN)
PREDECESSORS - (UMPKI-RXN OROTPDECARB-RXN)
PREDECESSORS - PWY-5687
PREDECESSORS - PWY-5686
REACTION-LAYOUT - (PWY-5687 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (PWY-5686 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LIST - PWY-5687
REACTION-LIST - PWY-5686
SUB-PATHWAYS - PWY-5687
SUB-PATHWAYS - PWY-5686
SYNONYMS - pyrimidine biosynthesis
//
UNIQUE-ID - PWY-5121
TYPES - DITERPENOID-SYN
TYPES - GGPP-Biosynthesis
TYPES - Super-Pathways
COMMON-NAME - superpathway of geranylgeranyldiphosphate biosynthesis II (via MEP)
CREDITS - SRI
CREDITS - |caspi|
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |tissier|
PATHWAY-LINKS - (GERANYLGERANYL-PP PWY-5660 PWY-5416 PWY-5063 PWY-2981 PWY-5032 CAROTENOID-PWY)
PREDECESSORS - (FARNESYLTRANSTRANSFERASE-RXN FPPSYN-RXN)
PREDECESSORS - PWY-5120
PREDECESSORS - PWY-5123
PREDECESSORS - NONMEVIPP-PWY
REACTION-LAYOUT - (PWY-5120 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (PWY-5123 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (NONMEVIPP-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LIST - PWY-5120
REACTION-LIST - PWY-5123
REACTION-LIST - NONMEVIPP-PWY
SUB-PATHWAYS - PWY-5120
SUB-PATHWAYS - PWY-5123
SUB-PATHWAYS - NONMEVIPP-PWY
SYNONYMS - GGPP biosynthesis II (plastidic)
//
UNIQUE-ID - PWY-5918
TYPES - HEME-SYN
TYPES - Super-Pathways
COMMON-NAME - heme biosynthesis I
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (GLT (GLUTAMATE-SYN . :INCOMING))
PATHWAY-LINKS - (PROTOHEME RXN-8073 HEMEOSYN-RXN)
PREDECESSORS - (UROGENDECARBOX-RXN UROGENIIISYN-RXN)
PREDECESSORS - HEME-BIOSYNTHESIS-II
PREDECESSORS - PWY-5188
PRIMARIES - (GLURS-RXN (GLT) (|Charged-GLT-tRNAs|))
PRIMARIES - (GLUTRNAREDUCT-RXN NIL (GLUTAMATE-1-SEMIALDEHYDE))
REACTION-LAYOUT - (HEME-BIOSYNTHESIS-II (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (PWY-5188 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LIST - HEME-BIOSYNTHESIS-II
REACTION-LIST - PWY-5188
SUB-PATHWAYS - HEME-BIOSYNTHESIS-II
SUB-PATHWAYS - PWY-5188
//
UNIQUE-ID - THRESYN-PWY
TYPES - THREONINE-BIOSYNTHESIS
TYPES - Super-Pathways
COMMON-NAME - threonine biosynthesis
CREDITS - O-18
CREDITS - |riley|
CREDITS - SRI
CREDITS - |shearer|
PREDECESSORS - (ASPARTATEKIN-RXN ASPAMINOTRANS-RXN)
PREDECESSORS - ASPARTATESYN-PWY
PREDECESSORS - HOMOSER-THRESYN-PWY
PREDECESSORS - HOMOSERSYN-PWY
PREDECESSORS - (HOMOSERKIN-RXN HOMOSERDEHYDROG-RXN)
REACTION-LAYOUT - (ASPARTATESYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (HOMOSER-THRESYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (HOMOSERSYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LIST - ASPARTATESYN-PWY
REACTION-LIST - HOMOSER-THRESYN-PWY
REACTION-LIST - HOMOSERSYN-PWY
SUB-PATHWAYS - ASPARTATESYN-PWY
SUB-PATHWAYS - HOMOSER-THRESYN-PWY
SUB-PATHWAYS - HOMOSERSYN-PWY
//
UNIQUE-ID - PWY2OL-4
TYPES - Super-Pathways
TYPES - Linalool-Biosynthesis
TYPES - Energy-Metabolism
COMMON-NAME - linalool biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - O-27
CREDITS - |pujar|
PATHWAY-LINKS - (FARNESYL-PP (NONMEVIPP-PWY . :INCOMING))
PREDECESSORS - (4.2.3.25-RXN FPPSYN-RXN)
PREDECESSORS - (4.2.3.26-RXN FPPSYN-RXN)
REACTION-LAYOUT - (4.2.3.25-RXN (:LEFT-PRIMARIES GERANYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8997))
REACTION-LAYOUT - (4.2.3.26-RXN (:LEFT-PRIMARIES GERANYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8996))
REACTION-LAYOUT - (FPPSYN-RXN (:LEFT-PRIMARIES DELTA3-ISOPENTENYL-PP GERANYL-PP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES FARNESYL-PP))
REACTION-LIST - 4.2.3.25-RXN
REACTION-LIST - 4.2.3.26-RXN
REACTION-LIST - FPPSYN-RXN
//
UNIQUE-ID - PWY-4221
TYPES - CoA-Biosynthesis
TYPES - Super-Pathways
COMMON-NAME - pantothenate and coenzymeA biosynthesis II
PREDECESSORS - (PANTOATE-BETA-ALANINE-LIG-RXN 2.6.1.18-RXN)
PREDECESSORS - PWY-3941
PREDECESSORS - (PANTOTHENATE-KIN-RXN PANTOATE-BETA-ALANINE-LIG-RXN)
PREDECESSORS - COA-PWY
PREDECESSORS - PANTO-PWY
REACTION-LAYOUT - (PWY-3941 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (PANTO-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (COA-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LIST - PWY-3941
REACTION-LIST - PANTO-PWY
REACTION-LIST - COA-PWY
SUB-PATHWAYS - PWY-3941
SUB-PATHWAYS - PANTO-PWY
SUB-PATHWAYS - COA-PWY
//
UNIQUE-ID - ARO-PWY
TYPES - Chorismate-Biosynthesis
TYPES - Super-Pathways
COMMON-NAME - chorismate biosynthesis I
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |caspi|
CREDITS - O0-3
CREDITS - |ingraham|
PATHWAY-LINKS - (ERYTHROSE-4P NONOXIPENT-PWY)
PATHWAY-LINKS - (CHORISMATE PWY-3462 TRPSYN-PWY FOLSYN-PWY PWY-5791)
PREDECESSORS - (CHORISMATE-SYNTHASE-RXN 2.5.1.19-RXN)
PREDECESSORS - (2.5.1.19-RXN SHIKIMATE-KINASE-RXN)
PREDECESSORS - (SHIKIMATE-KINASE-RXN SHIKIMATE-5-DEHYDROGENASE-RXN)
PREDECESSORS - (SHIKIMATE-5-DEHYDROGENASE-RXN 3-DEHYDROQUINATE-DEHYDRATASE-RXN)
PREDECESSORS - (3-DEHYDROQUINATE-DEHYDRATASE-RXN 3-DEHYDROQUINATE-SYNTHASE-RXN)
PREDECESSORS - (3-DEHYDROQUINATE-SYNTHASE-RXN DAHPSYN-RXN)
PREDECESSORS - (DAHPSYN-RXN)
PREDECESSORS - (SHIKIMATE-KINASE-RXN RXN-7968)
PREDECESSORS - (RXN-7968 3-DEHYDROQUINATE-DEHYDRATASE-RXN)
REACTION-LAYOUT - (RXN-7968 (:LEFT-PRIMARIES SHIKIMATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 3-DEHYDRO-SHIKIMATE))
REACTION-LAYOUT - (DAHPSYN-RXN (:LEFT-PRIMARIES ERYTHROSE-4P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-DEOXY-D-ARABINO-HEPTULOSONATE-7-P))
REACTION-LAYOUT - (3-DEHYDROQUINATE-SYNTHASE-RXN (:LEFT-PRIMARIES 3-DEOXY-D-ARABINO-HEPTULOSONATE-7-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DEHYDROQUINATE))
REACTION-LAYOUT - (3-DEHYDROQUINATE-DEHYDRATASE-RXN (:LEFT-PRIMARIES DEHYDROQUINATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-DEHYDRO-SHIKIMATE))
REACTION-LAYOUT - (SHIKIMATE-5-DEHYDROGENASE-RXN (:LEFT-PRIMARIES SHIKIMATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 3-DEHYDRO-SHIKIMATE))
REACTION-LAYOUT - (SHIKIMATE-KINASE-RXN (:LEFT-PRIMARIES SHIKIMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SHIKIMATE-5P))
REACTION-LAYOUT - (2.5.1.19-RXN (:LEFT-PRIMARIES SHIKIMATE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-ENOLPYRUVYL-SHIKIMATE-5P))
REACTION-LAYOUT - (CHORISMATE-SYNTHASE-RXN (:LEFT-PRIMARIES 3-ENOLPYRUVYL-SHIKIMATE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CHORISMATE))
REACTION-LIST - RXN-7968
REACTION-LIST - DAHPSYN-RXN
REACTION-LIST - 3-DEHYDROQUINATE-SYNTHASE-RXN
REACTION-LIST - 3-DEHYDROQUINATE-DEHYDRATASE-RXN
REACTION-LIST - SHIKIMATE-5-DEHYDROGENASE-RXN
REACTION-LIST - SHIKIMATE-KINASE-RXN
REACTION-LIST - 2.5.1.19-RXN
REACTION-LIST - CHORISMATE-SYNTHASE-RXN
SYNONYMS - aromatic amino acid biosynthesis
SYNONYMS - shikimate pathway
//
UNIQUE-ID - PWY-5043
TYPES - Purine-Nucleotides-Salvage
TYPES - Super-Pathways
COMMON-NAME - salvage pathways of purine nucleosides II (plant)
CITATIONS - :EV-COMP-AINF:3497824356:liya
PATHWAY-LINKS - (XANTHINE PWY-5044)
PREDECESSORS - (RXN-7607 INOSINEKIN-RXN)
PREDECESSORS - (INOSINEKIN-RXN RXN-7607)
PREDECESSORS - (ADENOSINE-KINASE-RXN AMP-DEPHOSPHORYLATION-RXN)
PREDECESSORS - (ADENOSINE-NUCLEOSIDASE-RXN AMP-DEPHOSPHORYLATION-RXN)
PREDECESSORS - (AMP-DEPHOSPHORYLATION-RXN ADENOSINE-KINASE-RXN)
PREDECESSORS - (RXN0-363 XMPXAN-RXN)
PREDECESSORS - (XMPXAN-RXN IMP-DEHYDROG-RXN)
PREDECESSORS - (IMP-DEHYDROG-RXN AMP-DEAMINASE-RXN)
PREDECESSORS - (AMP-DEAMINASE-RXN ADENPRIBOSYLTRAN-RXN)
PREDECESSORS - (ADENPRIBOSYLTRAN-RXN ADENOSINE-NUCLEOSIDASE-RXN)
PREDECESSORS - (AMP-DEAMINASE-RXN ADENOSINE-KINASE-RXN)
PREDECESSORS - (INOSINE-NUCLEOSIDASE-RXN RXN-7607)
PREDECESSORS - (RXN-7607 AMP-DEAMINASE-RXN)
PREDECESSORS - (RXN-7609 GUANPRIBOSYLTRAN-RXN)
PREDECESSORS - (GUANOSINE-DEAMINASE-RXN RXN-7609)
PREDECESSORS - (RXN0-366 RXN-7609)
PREDECESSORS - (GUANPRIBOSYLTRAN-RXN RXN0-366)
PREDECESSORS - (RXN-7609 GMP-SYN-NH3-RXN)
PREDECESSORS - (GUANOSINEKIN-RXN RXN-7609)
PREDECESSORS - (RXN-7609 GUANOSINEKIN-RXN)
PREDECESSORS - (GUANINE-DEAMINASE-RXN RXN0-366)
PREDECESSORS - (RXN-7682 INOSINE-NUCLEOSIDASE-RXN)
PREDECESSORS - (HYPOXANPRIBOSYLTRAN-RXN INOSINE-NUCLEOSIDASE-RXN)
PREDECESSORS - (RXN-7607 HYPOXANPRIBOSYLTRAN-RXN)
PRIMARIES - (INOSINEKIN-RXN (INOSINE) (IMP))
PRIMARIES - (HYPOXANPRIBOSYLTRAN-RXN (HYPOXANTHINE) (IMP))
PRIMARIES - (AMP-DEPHOSPHORYLATION-RXN (AMP) (ADENOSINE))
PRIMARIES - (RXN-7682 (HYPOXANTHINE) (XANTHINE))
PRIMARIES - (RXN0-366 (GUANOSINE) (GUANINE))
PRIMARIES - (RXN-7609 (GMP) (GUANOSINE))
PRIMARIES - (GUANPRIBOSYLTRAN-RXN (GUANINE) (GMP))
PRIMARIES - (GUANOSINEKIN-RXN (GUANOSINE) (GMP))
PRIMARIES - (GUANOSINE-DEAMINASE-RXN (GUANOSINE) (XANTHOSINE))
PRIMARIES - (GUANINE-DEAMINASE-RXN (GUANINE) (XANTHINE))
PRIMARIES - (GMP-SYN-NH3-RXN (XANTHOSINE-5-PHOSPHATE) (GMP))
PRIMARIES - (XMPXAN-RXN (XANTHOSINE-5-PHOSPHATE) (XANTHOSINE))
PRIMARIES - (RXN0-363 (XANTHOSINE) (XANTHINE))
PRIMARIES - (RXN-7607 (IMP) (INOSINE))
PRIMARIES - (INOSINE-NUCLEOSIDASE-RXN (INOSINE) (HYPOXANTHINE))
PRIMARIES - (IMP-DEHYDROG-RXN (IMP) (XANTHOSINE-5-PHOSPHATE))
PRIMARIES - (AMP-DEAMINASE-RXN (AMP) (IMP))
PRIMARIES - (ADENPRIBOSYLTRAN-RXN (ADENINE) (AMP))
PRIMARIES - (ADENOSINE-NUCLEOSIDASE-RXN (ADENOSINE) (ADENINE))
PRIMARIES - (ADENOSINE-KINASE-RXN (ADENOSINE) (AMP))
REACTION-LAYOUT - (INOSINEKIN-RXN (:LEFT-PRIMARIES INOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES IMP))
REACTION-LAYOUT - (HYPOXANPRIBOSYLTRAN-RXN (:LEFT-PRIMARIES IMP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES HYPOXANTHINE))
REACTION-LAYOUT - (AMP-DEPHOSPHORYLATION-RXN (:LEFT-PRIMARIES AMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ADENOSINE))
REACTION-LAYOUT - (RXN-7682 (:LEFT-PRIMARIES HYPOXANTHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHINE))
REACTION-LAYOUT - (GUANPRIBOSYLTRAN-RXN (:LEFT-PRIMARIES GUANINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GMP))
REACTION-LAYOUT - (GMP-SYN-NH3-RXN (:LEFT-PRIMARIES XANTHOSINE-5-PHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GMP AMP))
REACTION-LAYOUT - (RXN0-366 (:LEFT-PRIMARIES GUANOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GUANINE))
REACTION-LAYOUT - (GUANOSINEKIN-RXN (:LEFT-PRIMARIES GUANOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GMP))
REACTION-LAYOUT - (GUANINE-DEAMINASE-RXN (:LEFT-PRIMARIES GUANINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHINE))
REACTION-LAYOUT - (GUANOSINE-DEAMINASE-RXN (:LEFT-PRIMARIES GUANOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHOSINE))
REACTION-LAYOUT - (RXN-7609 (:LEFT-PRIMARIES GMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GUANOSINE))
REACTION-LAYOUT - (RXN0-363 (:LEFT-PRIMARIES XANTHOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHINE))
REACTION-LAYOUT - (XMPXAN-RXN (:LEFT-PRIMARIES XANTHOSINE-5-PHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHOSINE))
REACTION-LAYOUT - (INOSINE-NUCLEOSIDASE-RXN (:LEFT-PRIMARIES INOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HYPOXANTHINE))
REACTION-LAYOUT - (RXN-7607 (:LEFT-PRIMARIES IMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INOSINE))
REACTION-LAYOUT - (IMP-DEHYDROG-RXN (:LEFT-PRIMARIES IMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHOSINE-5-PHOSPHATE))
REACTION-LAYOUT - (ADENOSINE-KINASE-RXN (:LEFT-PRIMARIES ADENOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AMP))
REACTION-LAYOUT - (AMP-DEAMINASE-RXN (:LEFT-PRIMARIES AMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES IMP))
REACTION-LAYOUT - (ADENPRIBOSYLTRAN-RXN (:LEFT-PRIMARIES AMP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES ADENINE))
REACTION-LAYOUT - (ADENOSINE-NUCLEOSIDASE-RXN (:LEFT-PRIMARIES ADENOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ADENINE))
REACTION-LIST - INOSINEKIN-RXN
REACTION-LIST - HYPOXANPRIBOSYLTRAN-RXN
REACTION-LIST - AMP-DEPHOSPHORYLATION-RXN
REACTION-LIST - RXN-7682
REACTION-LIST - GUANPRIBOSYLTRAN-RXN
REACTION-LIST - GMP-SYN-NH3-RXN
REACTION-LIST - RXN0-366
REACTION-LIST - GUANOSINEKIN-RXN
REACTION-LIST - GUANINE-DEAMINASE-RXN
REACTION-LIST - GUANOSINE-DEAMINASE-RXN
REACTION-LIST - RXN-7609
REACTION-LIST - RXN0-363
REACTION-LIST - XMPXAN-RXN
REACTION-LIST - INOSINE-NUCLEOSIDASE-RXN
REACTION-LIST - RXN-7607
REACTION-LIST - IMP-DEHYDROG-RXN
REACTION-LIST - ADENOSINE-KINASE-RXN
REACTION-LIST - AMP-DEAMINASE-RXN
REACTION-LIST - ADENPRIBOSYLTRAN-RXN
REACTION-LIST - ADENOSINE-NUCLEOSIDASE-RXN
SYNONYMS - purine recycle pathways
//
UNIQUE-ID - PWY0-845
TYPES - Vitamin-B6-Biosynthesis
TYPES - Super-Pathways
COMMON-NAME - superpathway of pyridoxal 5'-phosphate biosynthesis and salvage
PREDECESSORS - PYRIDOXSYN-PWY
PREDECESSORS - PLPSAL-PWY
REACTION-LAYOUT - (PYRIDOXSYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (PLPSAL-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LIST - PYRIDOXSYN-PWY
REACTION-LIST - PLPSAL-PWY
SUB-PATHWAYS - PYRIDOXSYN-PWY
SUB-PATHWAYS - PLPSAL-PWY
SYNONYMS - vitamin B6 biosynthesis and salvage
//
UNIQUE-ID - FOLSYN-PWY
TYPES - Folate-Biosynthesis
TYPES - Super-Pathways
COMMON-NAME - tetrahydrofolate biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - SRI
CREDITS - |caspi|
CREDITS - O-18
CREDITS - |riley|
PATHWAY-LINKS - (CHORISMATE ARO-PWY)
PATHWAY-LINKS - (THF PWY-2201 PWY-2161)
PREDECESSORS - (GTP-CYCLOHYDRO-I-RXN)
PREDECESSORS - (H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN GTP-CYCLOHYDRO-I-RXN)
PREDECESSORS - (DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN)
PREDECESSORS - (H2NEOPTERINALDOL-RXN DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN)
PREDECESSORS - (H2PTERIDINEPYROPHOSPHOKIN-RXN H2NEOPTERINALDOL-RXN)
PREDECESSORS - (H2PTEROATESYNTH-RXN H2PTERIDINEPYROPHOSPHOKIN-RXN)
PREDECESSORS - (DIHYDROFOLATESYNTH-RXN H2PTEROATESYNTH-RXN)
PREDECESSORS - (DIHYDROFOLATEREDUCT-RXN DIHYDROFOLATESYNTH-RXN)
PREDECESSORS - (PABASYN-RXN)
PREDECESSORS - (ADCLY-RXN PABASYN-RXN)
PREDECESSORS - (H2PTEROATESYNTH-RXN ADCLY-RXN)
PREDECESSORS - (METHENYLTHFCYCLOHYDRO-RXN)
PREDECESSORS - (GART-RXN METHENYLTHFCYCLOHYDRO-RXN)
PRIMARIES - (GART-RXN (10-FORMYL-THF) (THF))
REACTION-LAYOUT - (GART-RXN (:LEFT-PRIMARIES 10-FORMYL-THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES THF))
REACTION-LAYOUT - (GTP-CYCLOHYDRO-I-RXN (:LEFT-PRIMARIES GTP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDRONEOPTERIN-P3))
REACTION-LAYOUT - (H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN (:LEFT-PRIMARIES DIHYDRONEOPTERIN-P3) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDRONEOPTERIN-P))
REACTION-LAYOUT - (DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN (:LEFT-PRIMARIES DIHYDRONEOPTERIN-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDRO-NEO-PTERIN))
REACTION-LAYOUT - (H2NEOPTERINALDOL-RXN (:LEFT-PRIMARIES DIHYDRO-NEO-PTERIN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AMINO-OH-HYDROXYMETHYL-DIHYDROPTERIDINE))
REACTION-LAYOUT - (H2PTERIDINEPYROPHOSPHOKIN-RXN (:LEFT-PRIMARIES AMINO-OH-HYDROXYMETHYL-DIHYDROPTERIDINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROPTERIN-CH2OH-PP))
REACTION-LAYOUT - (DIHYDROFOLATEREDUCT-RXN (:LEFT-PRIMARIES THF) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DIHYDROFOLATE))
REACTION-LAYOUT - (DIHYDROFOLATESYNTH-RXN (:LEFT-PRIMARIES 7-8-DIHYDROPTEROATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROFOLATE))
REACTION-LAYOUT - (METHENYLTHFCYCLOHYDRO-RXN (:LEFT-PRIMARIES 5-10-METHENYL-THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 10-FORMYL-THF))
REACTION-LAYOUT - (PABASYN-RXN (:LEFT-PRIMARIES CHORISMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 4-AMINO-4-DEOXYCHORISMATE))
REACTION-LAYOUT - (H2PTEROATESYNTH-RXN (:LEFT-PRIMARIES DIHYDROPTERIN-CH2OH-PP P-AMINO-BENZOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 7-8-DIHYDROPTEROATE))
REACTION-LAYOUT - (ADCLY-RXN (:LEFT-PRIMARIES 4-AMINO-4-DEOXYCHORISMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES P-AMINO-BENZOATE))
REACTION-LIST - GART-RXN
REACTION-LIST - GTP-CYCLOHYDRO-I-RXN
REACTION-LIST - H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN
REACTION-LIST - DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN
REACTION-LIST - H2NEOPTERINALDOL-RXN
REACTION-LIST - H2PTERIDINEPYROPHOSPHOKIN-RXN
REACTION-LIST - DIHYDROFOLATEREDUCT-RXN
REACTION-LIST - DIHYDROFOLATESYNTH-RXN
REACTION-LIST - METHENYLTHFCYCLOHYDRO-RXN
REACTION-LIST - PABASYN-RXN
REACTION-LIST - H2PTEROATESYNTH-RXN
REACTION-LIST - ADCLY-RXN
SYNONYMS - folic acid biosynthesis
SYNONYMS - folate biosynthesis
//
UNIQUE-ID - PHOTOALL-PWY
TYPES - Photosynthesis
TYPES - Super-Pathways
COMMON-NAME - oxygenic photosynthesis
CREDITS - O-18
CREDITS - |pellegrini-toole|
PREDECESSORS - PWY-101
PREDECESSORS - CALVIN-PWY
PRIMARIES - (GAPDHSYNEC-RXN (NADH-P-OR-NOP DPG) (GAP))
PRIMARIES - (PSII-RXN (WATER) (E- OXYGEN-MOLECULE))
PRIMARIES - (PSI-RXN (E- NADP) NIL)
REACTION-LAYOUT - (CALVIN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (PWY-101 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LIST - CALVIN-PWY
REACTION-LIST - PWY-101
SUB-PATHWAYS - CALVIN-PWY
SUB-PATHWAYS - PWY-101
//
UNIQUE-ID - PWY-2541
TYPES - TRITERPENOID-SYN
TYPES - Super-Pathways
TYPES - Sterol-Biosynthesis
COMMON-NAME - plant sterol biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |tissier|
PATHWAY-LINKS - (FARNESYL-PP PWY-5123)
PATHWAY-LINKS - (CPD-707 PWY-2582 PWY-699)
PREDECESSORS - (CYCLOARTENOL-SYNTHASE-RXN SQUALENE-MONOOXYGENASE-RXN)
PREDECESSORS - PWY-5670
PREDECESSORS - (RXN-8353 RXN-4222)
PREDECESSORS - (2.1.1.143-RXN RXN-4161)
PREDECESSORS - (RXN-4208 2.1.1.143-RXN)
PREDECESSORS - (RXN-4224 RXN-4221)
PREDECESSORS - (RXN-4222 RXN-707)
PREDECESSORS - (RXN-708 RXN-4222)
PREDECESSORS - (RXN-4210 RXN-4209)
PREDECESSORS - (RXN-707 RXN-706)
PREDECESSORS - (RXN-706 RXN-4181)
PREDECESSORS - (RXN-4144 1.14.13.70-RXN)
PREDECESSORS - (RXN-4021 CYCLOARTENOL-SYNTHASE-RXN)
PREDECESSORS - (RXN-4101 RXN-4021)
PREDECESSORS - (CYCLOEUCALENOL-CYCLOISOMERASE-RXN RXN-4101)
PREDECESSORS - (1.14.13.70-RXN CYCLOEUCALENOL-CYCLOISOMERASE-RXN)
PREDECESSORS - (RXN-4161 RXN-4144)
PREDECESSORS - (RXN-4181 RXN-4161)
PREDECESSORS - (RXN-4209 RXN-4208)
PREDECESSORS - (RXN-4221 RXN-4210)
PREDECESSORS - (RXN-4242 RXN-708)
PREDECESSORS - (RXN-4243 RXN-4224)
PREDECESSORS - (RXN-8352 RXN-8353)
PRIMARIES - (RXN-8352 (CPD-8134) (CPD-4161))
PRIMARIES - (RXN-8353 (CPD-4141) (CPD-8134))
PRIMARIES - (2.1.1.143-RXN (CPD-4101) (CPD-4124))
REACTION-LAYOUT - (PWY-5670 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (RXN-8352 (:LEFT-PRIMARIES CPD-8134) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4161))
REACTION-LAYOUT - (RXN-8353 (:LEFT-PRIMARIES CPD-4141) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8134))
REACTION-LAYOUT - (2.1.1.143-RXN (:LEFT-PRIMARIES CPD-4101) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4124))
REACTION-LAYOUT - (RXN-4243 (:LEFT-PRIMARIES CPD-4143) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4162))
REACTION-LAYOUT - (RXN-4242 (:LEFT-PRIMARIES CPD-707) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8135))
REACTION-LAYOUT - (RXN-4224 (:LEFT-PRIMARIES CPD-4142) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4143))
REACTION-LAYOUT - (RXN-4221 (:LEFT-PRIMARIES CPD-4127) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4142))
REACTION-LAYOUT - (RXN-4222 (:LEFT-PRIMARIES CPD-706) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4141))
REACTION-LAYOUT - (RXN-4210 (:LEFT-PRIMARIES CPD-4126) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4127))
REACTION-LAYOUT - (RXN-4209 (:LEFT-PRIMARIES CPD-4125) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4126))
REACTION-LAYOUT - (RXN-4208 (:LEFT-PRIMARIES CPD-4124) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4125))
REACTION-LAYOUT - (RXN-708 (:LEFT-PRIMARIES CPD-4141) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-707))
REACTION-LAYOUT - (RXN-707 (:LEFT-PRIMARIES CPD-700) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-706))
REACTION-LAYOUT - (RXN-706 (:LEFT-PRIMARIES EPISTEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-700))
REACTION-LAYOUT - (RXN-4181 (:LEFT-PRIMARIES CPD-4101) (:DIRECTION :L2R) (:RIGHT-PRIMARIES EPISTEROL))
REACTION-LAYOUT - (RXN-4161 (:LEFT-PRIMARIES CPD-4081) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4101))
REACTION-LAYOUT - (RXN-4144 (:LEFT-PRIMARIES ALPHA-METHYL-5-ALPHA-ERGOSTA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4081))
REACTION-LAYOUT - (1.14.13.70-RXN (:LEFT-PRIMARIES OBTUSIFOLIOL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALPHA-METHYL-5-ALPHA-ERGOSTA))
REACTION-LAYOUT - (CYCLOEUCALENOL-CYCLOISOMERASE-RXN (:LEFT-PRIMARIES CYCLOEUCALENOL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OBTUSIFOLIOL))
REACTION-LAYOUT - (RXN-4101 (:LEFT-PRIMARIES CPD-696) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CYCLOEUCALENOL))
REACTION-LAYOUT - (RXN-4021 (:LEFT-PRIMARIES CYCLOARTENOL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-696))
REACTION-LAYOUT - (CYCLOARTENOL-SYNTHASE-RXN (:LEFT-PRIMARIES EPOXYSQUALENE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CYCLOARTENOL))
REACTION-LIST - PWY-5670
REACTION-LIST - RXN-8352
REACTION-LIST - RXN-8353
REACTION-LIST - 2.1.1.143-RXN
REACTION-LIST - RXN-4243
REACTION-LIST - RXN-4242
REACTION-LIST - RXN-4224
REACTION-LIST - RXN-4221
REACTION-LIST - RXN-4222
REACTION-LIST - RXN-4210
REACTION-LIST - RXN-4209
REACTION-LIST - RXN-4208
REACTION-LIST - RXN-708
REACTION-LIST - RXN-707
REACTION-LIST - RXN-706
REACTION-LIST - RXN-4181
REACTION-LIST - RXN-4161
REACTION-LIST - RXN-4144
REACTION-LIST - 1.14.13.70-RXN
REACTION-LIST - CYCLOEUCALENOL-CYCLOISOMERASE-RXN
REACTION-LIST - RXN-4101
REACTION-LIST - RXN-4021
REACTION-LIST - CYCLOARTENOL-SYNTHASE-RXN
SUB-PATHWAYS - PWY-5670
//
UNIQUE-ID - PWY-5942
TYPES - Lycopene-Biosynthesis
TYPES - Super-Pathways
COMMON-NAME - trans-lycopene biosynthesis
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (GERANYLGERANYL-PP PWY-5120)
PREDECESSORS - (1.14.99.30-RXN RXN-8022)
PREDECESSORS - PWY-6287
PRIMARIES - (RXN-7979 (CPD1F-131) (CPD1F-133))
PRIMARIES - (RXN-7978 (CPD1F-130) (CPD1F-131))
PRIMARIES - (RXN-7985 (CPD1F-131) (CPD1F-130))
PRIMARIES - (RXN-8026 (CPD-7409) (CPD1F-130))
PRIMARIES - (RXN-8025 (CPD1F-129) (CPD-7409))
PRIMARIES - (RXN-8024 (CPD-7408) (CPD1F-98))
PRIMARIES - (RXN-8023 (PHYTOENE) (CPD-7408))
PRIMARIES - (RXN-8002 (CPD-464) (PHYTOENE))
PRIMARIES - (2.5.1.32-RXN (GERANYLGERANYL-PP) (CPD-464))
PRIMARIES - (1.14.99.30-RXN (NEUROSPORENE) (CPD1F-114))
PRIMARIES - (RXN-8022 (CPD1F-98) (NEUROSPORENE))
PRIMARIES - (FARNESYLTRANSTRANSFERASE-RXN (FARNESYL-PP DELTA3-ISOPENTENYL-PP) (GERANYLGERANYL-PP))
PRIMARIES - (RXN-5962 (CPD-5661) (CPD1F-119))
PRIMARIES - (RXN-5961 (CPD1F-118) (CPD-5661))
REACTION-LAYOUT - (PWY-6287 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (1.14.99.30-RXN (:LEFT-PRIMARIES NEUROSPORENE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-114))
REACTION-LIST - PWY-6287
REACTION-LIST - 1.14.99.30-RXN
SUB-PATHWAYS - PWY-6287
//
UNIQUE-ID - PWY-3001
TYPES - ISOLEUCINE-SYN
TYPES - Super-Pathways
COMMON-NAME - isoleucine biosynthesis I
CREDITS - SRI
CREDITS - |caspi|
KEY-REACTIONS - THREDEHYD-RXN
PREDECESSORS - (THREDEHYD-RXN THRESYN-RXN)
PREDECESSORS - (HOMOSERKIN-RXN HOMOSERDEHYDROG-RXN)
PREDECESSORS - (ASPARTATEKIN-RXN ASPAMINOTRANS-RXN)
PREDECESSORS - ASPARTATESYN-PWY
PREDECESSORS - HOMOSERSYN-PWY
PREDECESSORS - HOMOSER-THRESYN-PWY
PREDECESSORS - ILEUSYN-PWY
REACTION-LAYOUT - (ILEUSYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (HOMOSER-THRESYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (HOMOSERSYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (ASPARTATESYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LIST - ILEUSYN-PWY
REACTION-LIST - HOMOSER-THRESYN-PWY
REACTION-LIST - HOMOSERSYN-PWY
REACTION-LIST - ASPARTATESYN-PWY
SUB-PATHWAYS - ILEUSYN-PWY
SUB-PATHWAYS - HOMOSER-THRESYN-PWY
SUB-PATHWAYS - HOMOSERSYN-PWY
SUB-PATHWAYS - ASPARTATESYN-PWY
SYNONYMS - superpathway of isoleucine biosynthesis
//
UNIQUE-ID - PWY-5044
TYPES - Purine-Degradation
TYPES - Super-Pathways
COMMON-NAME - purine degradation I (aerobic)
CITATIONS - :EV-COMP-AINF:3497824356:liya
PATHWAY-LINKS - (URATE PWY-5691)
PATHWAY-LINKS - (XANTHINE (PWY-5043 . :INCOMING))
PREDECESSORS - (RXN0-363 GUANOSINE-DEAMINASE-RXN)
PREDECESSORS - (GUANINE-DEAMINASE-RXN RXN0-366)
PREDECESSORS - (RXN0-366 RXN-7609)
PREDECESSORS - (GUANOSINE-DEAMINASE-RXN RXN-7609)
PREDECESSORS - (RXN-7609)
PREDECESSORS - (RXN0-363 XMPXAN-RXN)
PREDECESSORS - (IMP-DEHYDROG-RXN AMP-DEAMINASE-RXN)
PREDECESSORS - (XMPXAN-RXN IMP-DEHYDROG-RXN)
PREDECESSORS - (INOSINE-NUCLEOSIDASE-RXN RXN-7607)
PREDECESSORS - (RXN-7682 INOSINE-NUCLEOSIDASE-RXN)
PREDECESSORS - (RXN-7607 AMP-DEAMINASE-RXN)
PREDECESSORS - (RXN0-901 RXN0-363)
PREDECESSORS - (RXN0-901 GUANINE-DEAMINASE-RXN)
PREDECESSORS - (RXN0-901 RXN-7682)
PRIMARIES - (RXN-7610 (URATE) (ALLANTOIN))
PRIMARIES - (RXN0-901 (XANTHINE) (URATE))
PRIMARIES - (RXN0-366 (GUANOSINE) (GUANINE))
PRIMARIES - (RXN0-363 (XANTHOSINE) (XANTHINE))
PRIMARIES - (GUANOSINE-DEAMINASE-RXN (GUANOSINE) (XANTHOSINE))
PRIMARIES - (RXN-7609 (GMP) (GUANOSINE))
PRIMARIES - (RXN-7682 (HYPOXANTHINE) (XANTHINE))
PRIMARIES - (INOSINE-NUCLEOSIDASE-RXN (INOSINE) (HYPOXANTHINE))
PRIMARIES - (RXN-7607 (IMP) (INOSINE))
PRIMARIES - (GUANINE-DEAMINASE-RXN (GUANINE) (XANTHINE))
PRIMARIES - (XMPXAN-RXN (XANTHOSINE-5-PHOSPHATE) (XANTHOSINE))
PRIMARIES - (IMP-DEHYDROG-RXN (IMP) (XANTHOSINE-5-PHOSPHATE))
PRIMARIES - (AMP-DEAMINASE-RXN (AMP) (IMP))
PRIMARIES - (ADENPRIBOSYLTRAN-RXN (ADENINE) (AMP))
PRIMARIES - (XANTHINE-DEHYDROGENASE-RXN (XANTHINE) (URATE))
REACTION-LAYOUT - (RXN0-901 (:LEFT-PRIMARIES XANTHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES URATE))
REACTION-LAYOUT - (RXN0-366 (:LEFT-PRIMARIES GUANOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GUANINE))
REACTION-LAYOUT - (GUANOSINE-DEAMINASE-RXN (:LEFT-PRIMARIES GUANOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHOSINE))
REACTION-LAYOUT - (RXN-7609 (:LEFT-PRIMARIES GMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GUANOSINE))
REACTION-LAYOUT - (RXN0-363 (:LEFT-PRIMARIES XANTHOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHINE))
REACTION-LAYOUT - (RXN-7682 (:LEFT-PRIMARIES HYPOXANTHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHINE))
REACTION-LAYOUT - (INOSINE-NUCLEOSIDASE-RXN (:LEFT-PRIMARIES INOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HYPOXANTHINE))
REACTION-LAYOUT - (RXN-7607 (:LEFT-PRIMARIES IMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INOSINE))
REACTION-LAYOUT - (GUANINE-DEAMINASE-RXN (:LEFT-PRIMARIES GUANINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHINE))
REACTION-LAYOUT - (XMPXAN-RXN (:LEFT-PRIMARIES XANTHOSINE-5-PHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHOSINE))
REACTION-LAYOUT - (IMP-DEHYDROG-RXN (:LEFT-PRIMARIES IMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHOSINE-5-PHOSPHATE))
REACTION-LAYOUT - (AMP-DEAMINASE-RXN (:LEFT-PRIMARIES AMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES IMP))
REACTION-LIST - RXN0-901
REACTION-LIST - RXN0-366
REACTION-LIST - GUANOSINE-DEAMINASE-RXN
REACTION-LIST - RXN-7609
REACTION-LIST - RXN0-363
REACTION-LIST - RXN-7682
REACTION-LIST - INOSINE-NUCLEOSIDASE-RXN
REACTION-LIST - RXN-7607
REACTION-LIST - GUANINE-DEAMINASE-RXN
REACTION-LIST - XMPXAN-RXN
REACTION-LIST - IMP-DEHYDROG-RXN
REACTION-LIST - AMP-DEAMINASE-RXN
SYNONYMS - purine catabolism
SYNONYMS - purine nucleotide degradation
SYNONYMS - purine nucleotide catabolism
//
UNIQUE-ID - PWY-5173
TYPES - Super-Pathways
TYPES - Acetyl-CoA-Biosynthesis
COMMON-NAME - superpathway of acetyl-CoA biosynthesis
PATHWAY-LINKS - (CIT TCA)
PATHWAY-LINKS - (PYRUVATE (CALVIN-PWY . :INCOMING) PWY-1042)
PREDECESSORS - PWY-5172
PREDECESSORS - PYRUVDEHYD-PWY
REACTION-LAYOUT - (PWY-5172 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (PYRUVDEHYD-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LIST - PWY-5172
REACTION-LIST - PYRUVDEHYD-PWY
SUB-PATHWAYS - PWY-5172
SUB-PATHWAYS - PYRUVDEHYD-PWY
//
UNIQUE-ID - PEPTIDOGLYCANSYN-PWY
TYPES - Peptidoglycan-Biosynthesis
TYPES - Super-Pathways
COMMON-NAME - peptidoglycan biosynthesis III
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - O-18
CREDITS - |riley|
PREDECESSORS - (UDP-NACMUR-ALA-LIG-RXN UDPNACETYLMURAMATEDEHYDROG-RXN)
PREDECESSORS - (GLUTRACE-RXN)
PREDECESSORS - (UDP-NACMURALA-GLU-LIG-RXN GLUTRACE-RXN UDP-NACMUR-ALA-LIG-RXN)
PREDECESSORS - (UDP-NACMURALGLDAPLIG-RXN UDP-NACMURALA-GLU-LIG-RXN)
PREDECESSORS - (DALADALALIG-RXN)
PREDECESSORS - (NACGLCTRANS-RXN PHOSNACMURPENTATRANS-RXN)
PREDECESSORS - (UDP-NACMURALGLDAPAALIG-RXN DALADALALIG-RXN UDP-NACMURALGLDAPLIG-RXN)
PREDECESSORS - (PHOSNACMURPENTATRANS-RXN UDP-NACMURALGLDAPAALIG-RXN)
PREDECESSORS - (UDPNACETYLMURAMATEDEHYDROG-RXN UDPNACETYLGLUCOSAMENOLPYRTRANS-RXN)
PRIMARIES - (NACGLCTRANS-RXN (C5) (C6 |NAcMur-Peptide-NAcGlc-Undecaprenols|))
REACTION-LAYOUT - (PHOSNACMURPENTATRANS-RXN (:LEFT-PRIMARIES C1) (:DIRECTION :L2R) (:RIGHT-PRIMARIES C5))
REACTION-LAYOUT - (DALADALALIG-RXN (:LEFT-PRIMARIES D-ALANINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES D-ALA-D-ALA))
REACTION-LAYOUT - (UDP-NACMURALGLDAPLIG-RXN (:LEFT-PRIMARIES UDP-AA-GLUTAMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP-AAGM-DIAMINOHEPTANEDIOATE))
REACTION-LAYOUT - (GLUTRACE-RXN (:LEFT-PRIMARIES GLT) (:DIRECTION :L2R) (:RIGHT-PRIMARIES D-GLT))
REACTION-LAYOUT - (UDP-NACMURALA-GLU-LIG-RXN (:LEFT-PRIMARIES D-GLT UDP-ACETYLMURAMOYL-ALA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP-AA-GLUTAMATE))
REACTION-LAYOUT - (UDP-NACMUR-ALA-LIG-RXN (:LEFT-PRIMARIES UDP-N-ACETYLMURAMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP-ACETYLMURAMOYL-ALA))
REACTION-LAYOUT - (UDP-NACMURALGLDAPAALIG-RXN (:LEFT-PRIMARIES D-ALA-D-ALA UDP-AAGM-DIAMINOHEPTANEDIOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES C1))
REACTION-LAYOUT - (NACGLCTRANS-RXN (:LEFT-PRIMARIES UDP-N-ACETYL-D-GLUCOSAMINE C5) (:DIRECTION :L2R) (:RIGHT-PRIMARIES C6))
REACTION-LAYOUT - (UDPNACETYLMURAMATEDEHYDROG-RXN (:LEFT-PRIMARIES UDP-N-ACETYLMURAMATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES UDP-ACETYL-CARBOXYVINYL-GLUCOSAMINE))
REACTION-LAYOUT - (UDPNACETYLGLUCOSAMENOLPYRTRANS-RXN (:LEFT-PRIMARIES UDP-N-ACETYL-D-GLUCOSAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP-ACETYL-CARBOXYVINYL-GLUCOSAMINE))
REACTION-LIST - PHOSNACMURPENTATRANS-RXN
REACTION-LIST - DALADALALIG-RXN
REACTION-LIST - UDP-NACMURALGLDAPLIG-RXN
REACTION-LIST - GLUTRACE-RXN
REACTION-LIST - UDP-NACMURALA-GLU-LIG-RXN
REACTION-LIST - UDP-NACMUR-ALA-LIG-RXN
REACTION-LIST - UDP-NACMURALGLDAPAALIG-RXN
REACTION-LIST - NACGLCTRANS-RXN
REACTION-LIST - UDPNACETYLMURAMATEDEHYDROG-RXN
REACTION-LIST - UDPNACETYLGLUCOSAMENOLPYRTRANS-RXN
//
UNIQUE-ID - PWY-841
TYPES - Purine-Nucleotide-De-Novo-Biosynthesis
TYPES - Super-Pathways
COMMON-NAME - purine nucleotides de novo biosynthesis II
CREDITS - O-18
CREDITS - |pellegrini-toole|
CREDITS - SRI
CREDITS - |fulcher|
PATHWAY-LINKS - (PRPP PWY0-662 PWY0-661)
PATHWAY-LINKS - (5-PHOSPHORIBOSYL-5-AMINOIMIDAZOLE THISYN-PWY)
PREDECESSORS - (ADENYLOSUCCINATE-SYNTHASE-RXN IMPCYCLOHYDROLASE-RXN)
PREDECESSORS - (IMP-DEHYDROG-RXN IMPCYCLOHYDROLASE-RXN)
PREDECESSORS - (AIRCARBOXY-RXN AIRS-RXN)
PREDECESSORS - PWY-6124
PREDECESSORS - PWY-6121
PREDECESSORS - (AMPSYN-RXN ADENYLOSUCCINATE-SYNTHASE-RXN)
PREDECESSORS - (GMP-SYN-GLUT-RXN IMP-DEHYDROG-RXN)
PRIMARIES - (AMPSYN-RXN (ADENYLOSUCC) (AMP))
REACTION-LAYOUT - (PWY-6124 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (PWY-6121 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (GMP-SYN-GLUT-RXN (:LEFT-PRIMARIES XANTHOSINE-5-PHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AMP GMP))
REACTION-LAYOUT - (IMP-DEHYDROG-RXN (:LEFT-PRIMARIES IMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHOSINE-5-PHOSPHATE))
REACTION-LAYOUT - (AMPSYN-RXN (:LEFT-PRIMARIES ADENYLOSUCC) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AMP))
REACTION-LAYOUT - (ADENYLOSUCCINATE-SYNTHASE-RXN (:LEFT-PRIMARIES IMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ADENYLOSUCC))
REACTION-LIST - PWY-6124
REACTION-LIST - PWY-6121
REACTION-LIST - GMP-SYN-GLUT-RXN
REACTION-LIST - IMP-DEHYDROG-RXN
REACTION-LIST - AMPSYN-RXN
REACTION-LIST - ADENYLOSUCCINATE-SYNTHASE-RXN
SUB-PATHWAYS - PWY-6124
SUB-PATHWAYS - PWY-6121
SYNONYMS - purine biosynthesis 2
//
UNIQUE-ID - PWY-6151
TYPES - S-adenosyl-L-methionine-cycle
TYPES - Super-Pathways
COMMON-NAME - S-adenosyl-L-methionine cycle I
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |caspi|
KEY-REACTIONS - RIBOSYLHOMOCYSTEINASE-RXN
KEY-REACTIONS - ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN
PREDECESSORS - (HOMOCYSMET-RXN RIBOSYLHOMOCYSTEINASE-RXN)
PREDECESSORS - (ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN RXN-7605)
PREDECESSORS - (RXN-7605 S-ADENMETSYN-RXN)
PREDECESSORS - (S-ADENMETSYN-RXN)
PREDECESSORS - (S-ADENMETSYN-RXN HOMOCYSMET-RXN)
PREDECESSORS - SAM-PWY
PREDECESSORS - (RIBOSYLHOMOCYSTEINASE-RXN ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN)
PRIMARIES - (RIBOSYLHOMOCYSTEINASE-RXN (CPD-564) (DIHYDROXYPENTANEDIONE HOMO-CYS))
PRIMARIES - (HOMOCYSMET-RXN (HOMO-CYS) (MET))
PRIMARIES - (RXN-6301 (HOMO-CYS) (MET))
PRIMARIES - (RXN-7605 (S-ADENOSYLMETHIONINE) (ADENOSYL-HOMO-CYS))
PRIMARIES - (HOMOCYSMETB12-RXN (HOMO-CYS) (MET))
PRIMARIES - (ADENOSYLHOMOCYSTEINASE-RXN (ADENOSYL-HOMO-CYS) (HOMO-CYS))
PRIMARIES - (S-ADENMETSYN-RXN (MET) (S-ADENOSYLMETHIONINE))
REACTION-LAYOUT - (HOMOCYSMET-RXN (:LEFT-PRIMARIES HOMO-CYS) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MET))
REACTION-LAYOUT - (RXN-7605 (:LEFT-PRIMARIES S-ADENOSYLMETHIONINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ADENOSYL-HOMO-CYS))
REACTION-LAYOUT - (SAM-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (RIBOSYLHOMOCYSTEINASE-RXN (:LEFT-PRIMARIES CPD-564) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROXYPENTANEDIONE HOMO-CYS))
REACTION-LAYOUT - (ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN (:LEFT-PRIMARIES ADENOSYL-HOMO-CYS) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-564))
REACTION-LIST - HOMOCYSMET-RXN
REACTION-LIST - RXN-7605
REACTION-LIST - SAM-PWY
REACTION-LIST - RIBOSYLHOMOCYSTEINASE-RXN
REACTION-LIST - ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN
SUB-PATHWAYS - SAM-PWY
SYNONYMS - SAM cycle
SYNONYMS - activated methyl cycle
SYNONYMS - AMC
//
UNIQUE-ID - PWY-4041
TYPES - Reductants
TYPES - Super-Pathways
COMMON-NAME - γ-glutamyl cycle
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - SRI
CREDITS - |caspi|
PREDECESSORS - (GLUTCYSLIG-RXN RXN-6622)
PREDECESSORS - (RXN-6622 RXN-6601)
PREDECESSORS - (GAMMA-GLUTAMYLCYCLOTRANSFERASE-RXN RXN-6601)
PREDECESSORS - (RXN-6601 GLUTATHIONE-SYN-RXN)
PREDECESSORS - GLUTATHIONESYN-PWY
PREDECESSORS - (5-OXOPROLINASE-ATP-HYDROLYSING-RXN GAMMA-GLUTAMYLCYCLOTRANSFERASE-RXN)
PREDECESSORS - (GLUTCYSLIG-RXN 5-OXOPROLINASE-ATP-HYDROLYSING-RXN)
PREDECESSORS - (GLUTATHIONE-SYN-RXN GLUTCYSLIG-RXN)
PRIMARIES - (RXN-6601 (GLUTATHIONE) (CYS-GLY 5-L-GLUTAMYL-L-AMINO-ACID))
PRIMARIES - (RXN-6622 (CYS-GLY) (CYS GLY))
REACTION-LAYOUT - (GAMMA-GLUTAMYLCYCLOTRANSFERASE-RXN (:LEFT-PRIMARIES 5-L-GLUTAMYL-L-AMINO-ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-OXOPROLINE))
REACTION-LAYOUT - (5-OXOPROLINASE-ATP-HYDROLYSING-RXN (:LEFT-PRIMARIES 5-OXOPROLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLT))
REACTION-LAYOUT - (RXN-6601 (:LEFT-PRIMARIES CYS-GLY 5-L-GLUTAMYL-L-AMINO-ACID) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GLUTATHIONE))
REACTION-LAYOUT - (RXN-6622 (:LEFT-PRIMARIES CYS-GLY) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLY CYS))
REACTION-LAYOUT - (GLUTATHIONESYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LIST - GAMMA-GLUTAMYLCYCLOTRANSFERASE-RXN
REACTION-LIST - 5-OXOPROLINASE-ATP-HYDROLYSING-RXN
REACTION-LIST - RXN-6601
REACTION-LIST - RXN-6622
REACTION-LIST - GLUTATHIONESYN-PWY
SUB-PATHWAYS - GLUTATHIONESYN-PWY
SYNONYMS - glutathione metabolism
//
UNIQUE-ID - SER-GLYSYN-PWY
TYPES - Amino-Acid-Biosynthesis
TYPES - Super-Pathways
COMMON-NAME - superpathway of serine and glycine biosynthesis I
PREDECESSORS - (GLYOHMETRANS-RXN RXN0-5114)
PREDECESSORS - GLYSYN-PWY
PREDECESSORS - SERSYN-PWY
REACTION-LAYOUT - (GLYSYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (SERSYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LIST - GLYSYN-PWY
REACTION-LIST - SERSYN-PWY
SUB-PATHWAYS - SERSYN-PWY
SUB-PATHWAYS - GLYSYN-PWY
//
UNIQUE-ID - PWY-4242
TYPES - CoA-Biosynthesis
TYPES - Super-Pathways
COMMON-NAME - pantothenate and coenzyme A biosynthesis III
PREDECESSORS - (PANTOTHENATE-KIN-RXN RXN-6401)
PREDECESSORS - PWY-3961
PREDECESSORS - COA-PWY
REACTION-LAYOUT - (COA-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LAYOUT - (PWY-3961 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LIST - COA-PWY
REACTION-LIST - PWY-3961
SUB-PATHWAYS - COA-PWY
SUB-PATHWAYS - PWY-3961
//
UNIQUE-ID - PWY-6213
TYPES - Transport-Pathways
COMMON-NAME - cadmium transport I
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - O-28
CREDITS - |pujar|
PREDECESSORS - (3.6.3.3-RXN)
REACTION-LAYOUT - (3.6.3.3-RXN (:LEFT-PRIMARIES CD+2) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CD+2))
REACTION-LIST - 3.6.3.3-RXN
//
UNIQUE-ID - PWY-6150
TYPES - Transport-Pathways
COMMON-NAME - potassium transport II
CITATIONS - :EV-COMP-AINF:3498597087:jaiswalp
CREDITS - O-28
CREDITS - |pujar|
REACTION-LAYOUT - (TRANS-RXN-185 (:LEFT-PRIMARIES K+) (:DIRECTION :L2R) (:RIGHT-PRIMARIES K+))
REACTION-LIST - TRANS-RXN-185
SYNONYMS - two pore outward rectifying K+ channel transport
//
UNIQUE-ID - PWY-6166
TYPES - Transport-Pathways
COMMON-NAME - calcium transport I
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - O-28
CREDITS - |pujar|
PREDECESSORS - (TRANS-RXN-192)
PREDECESSORS - (TRANS-RXN-191)
PRIMARIES - (TRANS-RXN-192 NIL NIL)
PRIMARIES - (TRANS-RXN-191 NIL NIL)
REACTION-LAYOUT - (TRANS-RXN-192 (:LEFT-PRIMARIES CA+2) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CA+2))
REACTION-LAYOUT - (TRANS-RXN-191 (:LEFT-PRIMARIES CA+2) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CA+2))
REACTION-LIST - TRANS-RXN-192
REACTION-LIST - TRANS-RXN-191
//
UNIQUE-ID - PWY-6238
TYPES - Transport-Pathways
COMMON-NAME - nucleobase ascorbate transport II
CITATIONS - :EV-COMP-AINF:3497824359:liya
CREDITS - O-28
CREDITS - |pujar|
PATHWAY-LINKS - (|Cytochromes-C| (PWY-882 . :INCOMING))
PATHWAY-LINKS - (ASCORBATE PWY-882)
PREDECESSORS - (TRANS-RXN-208 GALACTONOLACTONE-DEHYDROGENASE-RXN)
PREDECESSORS - (GALACTONOLACTONE-DEHYDROGENASE-RXN)
PRIMARIES - (GALACTONOLACTONE-DEHYDROGENASE-RXN (|Cytochromes-C|) (ASCORBATE))
REACTION-LAYOUT - (GALACTONOLACTONE-DEHYDROGENASE-RXN (:LEFT-PRIMARIES |Cytochromes-C|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ASCORBATE))
REACTION-LAYOUT - (TRANS-RXN-208 (:LEFT-PRIMARIES ASCORBATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ASCORBATE))
REACTION-LIST - GALACTONOLACTONE-DEHYDROGENASE-RXN
REACTION-LIST - TRANS-RXN-208
//
UNIQUE-ID - PWY-6137
TYPES - Transport-Pathways
COMMON-NAME - copper transport II
CITATIONS - :EV-COMP-AINF:3497824359:liya
CREDITS - O-28
CREDITS - |pujar|
REACTION-LAYOUT - (3.6.3.4-RXN (:LEFT-PRIMARIES CU+2) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CU+2))
REACTION-LIST - 3.6.3.4-RXN
SYNONYMS - copper transport in roots
//
UNIQUE-ID - GLYOXYLATE-BYPASS
TYPES - Energy-Metabolism
COMMON-NAME - glyoxylate cycle
CREDITS - SRI
CREDITS - |caspi|
IN-PATHWAY - PWY-561
KEY-REACTIONS - ISOCIT-CLEAV-RXN
KEY-REACTIONS - MALSYN-RXN
PREDECESSORS - (ACONITATEDEHYDR-RXN CITSYN-RXN)
PREDECESSORS - (CITSYN-RXN MALATE-DEH-RXN)
PREDECESSORS - (ACONITATEHYDR-RXN ACONITATEDEHYDR-RXN)
PREDECESSORS - (ISOCIT-CLEAV-RXN ACONITATEHYDR-RXN)
PREDECESSORS - (MALSYN-RXN ISOCIT-CLEAV-RXN)
PREDECESSORS - (MALATE-DEH-RXN MALSYN-RXN)
REACTION-LAYOUT - (MALATE-DEH-RXN (:LEFT-PRIMARIES MAL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OXALACETIC_ACID))
REACTION-LAYOUT - (ACONITATEDEHYDR-RXN (:LEFT-PRIMARIES CIT) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CIS-ACONITATE))
REACTION-LAYOUT - (CITSYN-RXN (:LEFT-PRIMARIES OXALACETIC_ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CIT))
REACTION-LAYOUT - (ACONITATEHYDR-RXN (:LEFT-PRIMARIES CIS-ACONITATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES THREO-DS-ISO-CITRATE))
REACTION-LAYOUT - (ISOCIT-CLEAV-RXN (:LEFT-PRIMARIES THREO-DS-ISO-CITRATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLYOX))
REACTION-LAYOUT - (MALSYN-RXN (:LEFT-PRIMARIES GLYOX) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MAL))
REACTION-LIST - MALATE-DEH-RXN
REACTION-LIST - ACONITATEDEHYDR-RXN
REACTION-LIST - CITSYN-RXN
REACTION-LIST - ACONITATEHYDR-RXN
REACTION-LIST - ISOCIT-CLEAV-RXN
REACTION-LIST - MALSYN-RXN
SUPER-PATHWAYS - PWY-561
SYNONYMS - glyoxylate bypass
SYNONYMS - glyoxylate shunt
//
UNIQUE-ID - PWY-5723
TYPES - Energy-Metabolism
COMMON-NAME - Rubisco shunt
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |zhang|
KEY-REACTIONS - RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN
PATHWAY-LINKS - (PYRUVATE PYRUVDEHYD-PWY)
PREDECESSORS - (PEPDEPHOS-RXN 2PGADEHYDRAT-RXN)
PREDECESSORS - (2PGADEHYDRAT-RXN 3PGAREARR-RXN)
PREDECESSORS - (3PGAREARR-RXN RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN)
PREDECESSORS - (2PGADEHYDRAT-RXN RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN)
PREDECESSORS - (PEPDEPHOS-RXN RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN)
PREDECESSORS - (RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN PHOSPHORIBULOKINASE-RXN)
PREDECESSORS - (PHOSPHORIBULOKINASE-RXN RIB5PISOM-RXN)
PREDECESSORS - (PHOSPHORIBULOKINASE-RXN RIBULP3EPIM-RXN)
PREDECESSORS - (RIBULP3EPIM-RXN 1TRANSKETO-RXN)
PREDECESSORS - (RIB5PISOM-RXN 1TRANSKETO-RXN)
PREDECESSORS - (1TRANSKETO-RXN TRANSALDOL-RXN)
PREDECESSORS - (TRANSALDOL-RXN 2TRANSKETO-RXN)
PRIMARIES - (2PGADEHYDRAT-RXN (2-PG) (PHOSPHO-ENOL-PYRUVATE))
PRIMARIES - (PEPDEPHOS-RXN (PHOSPHO-ENOL-PYRUVATE) (PYRUVATE))
PRIMARIES - (PHOSPHORIBULOKINASE-RXN (RIBULOSE-5P) (D-RIBULOSE-15-P2))
PRIMARIES - (RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN (D-RIBULOSE-15-P2) (G3P))
PRIMARIES - (1TRANSKETO-RXN (GAP D-SEDOHEPTULOSE-7-P) (XYLULOSE-5-PHOSPHATE RIBOSE-5P))
PRIMARIES - (2TRANSKETO-RXN (GAP FRUCTOSE-6P) (XYLULOSE-5-PHOSPHATE ERYTHROSE-4P))
REACTION-LAYOUT - (3PGAREARR-RXN (:LEFT-PRIMARIES G3P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-PG))
REACTION-LAYOUT - (2PGADEHYDRAT-RXN (:LEFT-PRIMARIES 2-PG) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE))
REACTION-LAYOUT - (PEPDEPHOS-RXN (:LEFT-PRIMARIES PYRUVATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE))
REACTION-LAYOUT - (PHOSPHORIBULOKINASE-RXN (:LEFT-PRIMARIES RIBULOSE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES D-RIBULOSE-15-P2))
REACTION-LAYOUT - (RIBULP3EPIM-RXN (:LEFT-PRIMARIES RIBULOSE-5P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES XYLULOSE-5-PHOSPHATE))
REACTION-LAYOUT - (RIB5PISOM-RXN (:LEFT-PRIMARIES RIBOSE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES RIBULOSE-5P))
REACTION-LAYOUT - (TRANSALDOL-RXN (:LEFT-PRIMARIES D-SEDOHEPTULOSE-7-P GAP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES ERYTHROSE-4P FRUCTOSE-6P))
REACTION-LAYOUT - (1TRANSKETO-RXN (:LEFT-PRIMARIES GAP D-SEDOHEPTULOSE-7-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XYLULOSE-5-PHOSPHATE RIBOSE-5P))
REACTION-LAYOUT - (2TRANSKETO-RXN (:LEFT-PRIMARIES XYLULOSE-5-PHOSPHATE ERYTHROSE-4P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GAP FRUCTOSE-6P))
REACTION-LAYOUT - (RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN (:LEFT-PRIMARIES D-RIBULOSE-15-P2) (:DIRECTION :L2R) (:RIGHT-PRIMARIES G3P))
REACTION-LIST - 3PGAREARR-RXN
REACTION-LIST - 2PGADEHYDRAT-RXN
REACTION-LIST - PEPDEPHOS-RXN
REACTION-LIST - PHOSPHORIBULOKINASE-RXN
REACTION-LIST - RIBULP3EPIM-RXN
REACTION-LIST - RIB5PISOM-RXN
REACTION-LIST - TRANSALDOL-RXN
REACTION-LIST - 1TRANSKETO-RXN
REACTION-LIST - 2TRANSKETO-RXN
REACTION-LIST - RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN
//
UNIQUE-ID - PWY-5481
TYPES - Pyruvate-Degradation
COMMON-NAME - pyruvate fermentation to lactate
CREDITS - SRI
CREDITS - |caspi|
IN-PATHWAY - PWY-3801
PREDECESSORS - (L-LACTATE-DEHYDROGENASE-RXN)
PRIMARIES - (L-LACTATE-DEHYDROGENASE-RXN (PYRUVATE) (L-LACTATE))
REACTION-LAYOUT - (L-LACTATE-DEHYDROGENASE-RXN (:LEFT-PRIMARIES L-LACTATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PYRUVATE))
REACTION-LIST - L-LACTATE-DEHYDROGENASE-RXN
SUPER-PATHWAYS - PWY-3801
//
UNIQUE-ID - PWY-5486
TYPES - Pyruvate-Degradation
COMMON-NAME - pyruvate fermentation to ethanol II
CREDITS - SRI
CREDITS - |caspi|
IN-PATHWAY - PWY-3801
KEY-REACTIONS - RXN-6161
PATHWAY-LINKS - (PYRUVATE PWY-1042)
PREDECESSORS - (ALCOHOL-DEHYDROG-RXN RXN-6161)
PRIMARIES - (RXN-6182 (ALPHA-GLC-6-P) (FRUCTOSE-6P))
PRIMARIES - (PHOSPHOGLUCMUT-RXN (GLC-1-P) (ALPHA-GLC-6-P))
PRIMARIES - (PEPDEPHOS-RXN (PHOSPHO-ENOL-PYRUVATE) (PYRUVATE))
PRIMARIES - (L-LACTATE-DEHYDROGENASE-RXN (PYRUVATE) (L-LACTATE))
PRIMARIES - (PGLUCISOM-RXN (GLC-6-P) (FRUCTOSE-6P))
PRIMARIES - (ALCOHOL-DEHYDROG-RXN (ACETALD) (ETOH))
PRIMARIES - (RXN-6161 (PYRUVATE) (ACETALD))
PRIMARIES - (2PGADEHYDRAT-RXN (2-PG) (PHOSPHO-ENOL-PYRUVATE))
PRIMARIES - (3PGAREARR-RXN (G3P) (2-PG))
PRIMARIES - (TRIOSEPISOMERIZATION-RXN (DIHYDROXY-ACETONE-PHOSPHATE) (GAP))
PRIMARIES - (PHOSGLYPHOS-RXN (DPG) (G3P))
PRIMARIES - (GAPOXNPHOSPHN-RXN (GAP) (DPG))
PRIMARIES - (F16ALDOLASE-RXN (FRUCTOSE-16-DIPHOSPHATE) (DIHYDROXY-ACETONE-PHOSPHATE GAP))
PRIMARIES - (6PFRUCTPHOS-RXN (FRUCTOSE-6P) (FRUCTOSE-16-DIPHOSPHATE))
PRIMARIES - (FRUCTOKINASE-RXN (FRU) (FRUCTOSE-6P))
PRIMARIES - (GLUC1PURIDYLTRANS-RXN (UDP-GLUCOSE) (GLC-1-P))
PRIMARIES - (SUCROSE-SYNTHASE-RXN (SUCROSE) (FRU UDP-GLUCOSE))
REACTION-LAYOUT - (RXN-6161 (:LEFT-PRIMARIES PYRUVATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ACETALD))
REACTION-LAYOUT - (ALCOHOL-DEHYDROG-RXN (:LEFT-PRIMARIES ACETALD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ETOH))
REACTION-LIST - RXN-6161
REACTION-LIST - ALCOHOL-DEHYDROG-RXN
SUPER-PATHWAYS - PWY-3801
//
UNIQUE-ID - METHFORM-PWY
TYPES - METHANOGENESIS
COMMON-NAME - methyl-coenzyme M reduction to methane
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |caspi|
CREDITS - O-18
CREDITS - |pellegrini-toole|
PREDECESSORS - (METHYL-COM-HTP-RXN)
PRIMARIES - (METHYL-COM-HTP-RXN (|Me-CoM|) (CH4 CH4))
PRIMARIES - (MTAMBARKMULTI-RXN (|CoM| METOH) NIL)
PRIMARIES - (1.12.99.2-RXN (CPD-1282) (CPD-1281 |CoM|))
REACTION-LAYOUT - (METHYL-COM-HTP-RXN (:LEFT-PRIMARIES |Me-CoM|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CH4))
REACTION-LIST - METHYL-COM-HTP-RXN
SYNONYMS - methane formation from methanol
SYNONYMS - methanogenesis
//
UNIQUE-ID - PWY-241
TYPES - Photosynthesis
COMMON-NAME - C4 photosynthetic carbon assimilation cycle
CITATIONS - :EV-COMP-AINF:3497824357:liya
PREDECESSORS - (PEPCARBOX-RXN PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN)
PREDECESSORS - (PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN MALIC-NADP-RXN)
PREDECESSORS - (MALIC-NADP-RXN MALATE-DEHYDROGENASE-NADP+-RXN)
PREDECESSORS - (MALATE-DEHYDROGENASE-NADP+-RXN PEPCARBOX-RXN)
REACTION-LAYOUT - (MALATE-DEHYDROGENASE-NADP+-RXN (:LEFT-PRIMARIES MAL) (:DIRECTION :R2L) (:RIGHT-PRIMARIES OXALACETIC_ACID))
REACTION-LAYOUT - (PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN (:LEFT-PRIMARIES PYRUVATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE))
REACTION-LAYOUT - (MALIC-NADP-RXN (:LEFT-PRIMARIES MAL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PYRUVATE))
REACTION-LAYOUT - (PEPCARBOX-RXN (:LEFT-PRIMARIES OXALACETIC_ACID) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE))
REACTION-LIST - MALATE-DEHYDROGENASE-NADP+-RXN
REACTION-LIST - PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN
REACTION-LIST - MALIC-NADP-RXN
REACTION-LIST - PEPCARBOX-RXN
SYNONYMS - PCA cycle
SYNONYMS - C4 photosynthesis
//
UNIQUE-ID - PWY-101
TYPES - Photosynthesis
COMMON-NAME - photosynthesis light reactions
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - SRI
CREDITS - |caspi|
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |zhang|
IN-PATHWAY - PHOTOALL-PWY
PREDECESSORS - (1.18.1.2-RXN RXN490-3650)
PREDECESSORS - (RXN490-3650 PSII-RXN)
PRIMARIES - (1.18.1.2-RXN NIL (NADPH))
REACTION-LAYOUT - (1.18.1.2-RXN (:LEFT-PRIMARIES |Reduced-ferredoxins|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NADPH))
REACTION-LAYOUT - (RXN490-3650 (:LEFT-PRIMARIES E-) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Reduced-ferredoxins|))
REACTION-LAYOUT - (PSII-RXN (:LEFT-PRIMARIES E-) (:DIRECTION :R2L) (:RIGHT-PRIMARIES WATER))
REACTION-LIST - 1.18.1.2-RXN
REACTION-LIST - RXN490-3650
REACTION-LIST - PSII-RXN
SUPER-PATHWAYS - PHOTOALL-PWY
//
UNIQUE-ID - PWY-181
TYPES - Photosynthesis
COMMON-NAME - photorespiration
CITATIONS - :EV-COMP-AINF:3497824356:liya
KEY-REACTIONS - RXN-961
PATHWAY-LINKS - (HYDROGEN-PEROXIDE DETOX1-PWY)
PATHWAY-LINKS - (G3P CALVIN-PWY)
PATHWAY-LINKS - (D-RIBULOSE-15-P2 CALVIN-PWY)
PREDECESSORS - (GLYCERATE-DEHYDROGENASE-RXN SERINE-GLYOXYLATE-AMINOTRANSFERASE-RXN)
PREDECESSORS - (SERINE-GLYOXYLATE-AMINOTRANSFERASE-RXN GLYOHMETRANS-RXN)
PREDECESSORS - (SERINE-GLYOXYLATE-AMINOTRANSFERASE-RXN RXN-969)
PREDECESSORS - (GLYCINE-AMINOTRANSFERASE-RXN RXN-969)
PREDECESSORS - (GPH-RXN RXN-961)
PREDECESSORS - (RXN-969 GPH-RXN)
PREDECESSORS - (GCVMULTI-RXN GLYCINE-AMINOTRANSFERASE-RXN)
PREDECESSORS - (GLYOHMETRANS-RXN GCVMULTI-RXN)
PREDECESSORS - (GLY3KIN-RXN GLYCERATE-DEHYDROGENASE-RXN)
PRIMARIES - (RXN-969 (GLYCOLLATE) (HYDROGEN-PEROXIDE GLYOX))
PRIMARIES - (RXN-961 (D-RIBULOSE-15-P2) (CPD-67))
PRIMARIES - (SERINE-GLYOXYLATE-AMINOTRANSFERASE-RXN (SER GLYOX) (GLY OH-PYR))
PRIMARIES - (GLY3KIN-RXN (GLYCERATE) (G3P))
PRIMARIES - (GLYCERATE-DEHYDROGENASE-RXN (OH-PYR) (GLYCERATE))
PRIMARIES - (RXN-974 (SER) (OH-PYR))
PRIMARIES - (GLYOHMETRANS-RXN (METHYLENE-THF) (SER))
PRIMARIES - (GCVMULTI-RXN (GLY) (METHYLENE-THF))
PRIMARIES - (GLYCINE-AMINOTRANSFERASE-RXN (GLYOX) (GLY))
PRIMARIES - (GPH-RXN (CPD-67) (GLYCOLLATE))
PRIMARIES - (RXN-971 (GLY) (METHYLENE-THF))
PRIMARIES - (RXN-970 (GLYOX) (GLY))
REACTION-LAYOUT - (SERINE-GLYOXYLATE-AMINOTRANSFERASE-RXN (:LEFT-PRIMARIES SER GLYOX) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLY OH-PYR))
REACTION-LAYOUT - (GCVMULTI-RXN (:LEFT-PRIMARIES GLY) (:DIRECTION :L2R) (:RIGHT-PRIMARIES METHYLENE-THF))
REACTION-LAYOUT - (GLYCERATE-DEHYDROGENASE-RXN (:LEFT-PRIMARIES GLYCERATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES OH-PYR))
REACTION-LAYOUT - (GLYCINE-AMINOTRANSFERASE-RXN (:LEFT-PRIMARIES GLY) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GLYOX))
REACTION-LAYOUT - (GLY3KIN-RXN (:LEFT-PRIMARIES GLYCERATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES G3P))
REACTION-LAYOUT - (GLYOHMETRANS-RXN (:LEFT-PRIMARIES SER) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GLY METHYLENE-THF))
REACTION-LAYOUT - (RXN-969 (:LEFT-PRIMARIES GLYCOLLATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HYDROGEN-PEROXIDE GLYOX))
REACTION-LAYOUT - (GPH-RXN (:LEFT-PRIMARIES CPD-67) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLYCOLLATE))
REACTION-LAYOUT - (RXN-961 (:LEFT-PRIMARIES D-RIBULOSE-15-P2) (:DIRECTION :L2R) (:RIGHT-PRIMARIES G3P CPD-67))
REACTION-LIST - SERINE-GLYOXYLATE-AMINOTRANSFERASE-RXN
REACTION-LIST - GCVMULTI-RXN
REACTION-LIST - GLYCERATE-DEHYDROGENASE-RXN
REACTION-LIST - GLYCINE-AMINOTRANSFERASE-RXN
REACTION-LIST - GLY3KIN-RXN
REACTION-LIST - GLYOHMETRANS-RXN
REACTION-LIST - RXN-969
REACTION-LIST - GPH-RXN
REACTION-LIST - RXN-961
SYNONYMS - C2 photorespiratory carbon oxidation cycle
SYNONYMS - PCO cycle
//
UNIQUE-ID - PWY-1141
TYPES - Photosynthesis
COMMON-NAME - xanthophyll cycle
CITATIONS - :EV-COMP-AINF:3497824358:liya
PREDECESSORS - (RXN-7985 RXN-7984)
PREDECESSORS - (RXN-7984 RXN-7979)
PREDECESSORS - (RXN-7978 RXN-7985)
PREDECESSORS - (RXN-7979 RXN-7978)
PRIMARIES - (RXN-7978 (CPD1F-130) (CPD1F-131))
PRIMARIES - (RXN-7979 (CPD1F-131) (CPD1F-133))
PRIMARIES - (RXN-7984 (CPD1F-133) (CPD1F-131))
PRIMARIES - (RXN-7985 (CPD1F-131) (CPD1F-130))
REACTION-LAYOUT - (RXN-7978 (:LEFT-PRIMARIES CPD1F-130) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-131))
REACTION-LAYOUT - (RXN-7979 (:LEFT-PRIMARIES CPD1F-131) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-133))
REACTION-LAYOUT - (RXN-7984 (:LEFT-PRIMARIES CPD1F-133) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-131))
REACTION-LAYOUT - (RXN-7985 (:LEFT-PRIMARIES CPD1F-131) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-130))
REACTION-LIST - RXN-7978
REACTION-LIST - RXN-7979
REACTION-LIST - RXN-7984
REACTION-LIST - RXN-7985
SYNONYMS - violaxanthin cycle
//
UNIQUE-ID - CALVIN-PWY
TYPES - Autotrophic-CO2-Fixation
TYPES - CARBO-BIOSYNTHESIS
TYPES - Photosynthesis
COMMON-NAME - Calvin-Benson-Bassham cycle
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - SRI
CREDITS - |caspi|
CREDITS - O-18
CREDITS - |pellegrini-toole|
IN-PATHWAY - PHOTOALL-PWY
KEY-REACTIONS - RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN
PATHWAY-LINKS - (FRUCTOSE-6P |Biosynthesis|)
PREDECESSORS - (RIB5PISOM-RXN 1TRANSKETO-RXN)
PREDECESSORS - (PHOSPHORIBULOKINASE-RXN RIBULP3EPIM-RXN)
PREDECESSORS - (RIBULP3EPIM-RXN 2TRANSKETO-RXN)
PREDECESSORS - (TRIOSEPISOMERIZATION-RXN 1.2.1.13-RXN)
PREDECESSORS - (1.2.1.13-RXN PHOSGLYPHOS-RXN)
PREDECESSORS - (PHOSGLYPHOS-RXN RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN)
PREDECESSORS - (TRIOSEPISOMERIZATION-RXN)
PREDECESSORS - (SEDOBISALDOL-RXN TRIOSEPISOMERIZATION-RXN)
PREDECESSORS - (SEDOHEPTULOSE-BISPHOSPHATASE-RXN SEDOBISALDOL-RXN)
PREDECESSORS - (1TRANSKETO-RXN SEDOHEPTULOSE-BISPHOSPHATASE-RXN)
PREDECESSORS - (RIBULP3EPIM-RXN 1TRANSKETO-RXN)
PREDECESSORS - (RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN PHOSPHORIBULOKINASE-RXN)
PREDECESSORS - (PHOSPHORIBULOKINASE-RXN RIB5PISOM-RXN)
PREDECESSORS - (2TRANSKETO-RXN F16BDEPHOS-RXN)
PREDECESSORS - (F16BDEPHOS-RXN F16ALDOLASE-RXN)
PREDECESSORS - (F16ALDOLASE-RXN TRIOSEPISOMERIZATION-RXN)
PRIMARIES - (RIB5PISOM-RXN (RIBOSE-5P) NIL)
PRIMARIES - (2TRANSKETO-RXN (FRUCTOSE-6P) (XYLULOSE-5-PHOSPHATE))
PRIMARIES - (RIBULP3EPIM-RXN (XYLULOSE-5-PHOSPHATE) (RIBULOSE-5P))
PRIMARIES - (1TRANSKETO-RXN (D-SEDOHEPTULOSE-7-P) (RIBOSE-5P XYLULOSE-5-PHOSPHATE))
PRIMARIES - (F16ALDOLASE-RXN NIL (FRUCTOSE-16-DIPHOSPHATE))
PRIMARIES - (TRIOSEPISOMERIZATION-RXN (GAP) NIL)
PRIMARIES - (1.2.1.13-RXN (DPG) (GAP))
PRIMARIES - (PHOSGLYPHOS-RXN (G3P) (DPG))
REACTION-LAYOUT - (RIB5PISOM-RXN (:LEFT-PRIMARIES RIBOSE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES RIBULOSE-5P))
REACTION-LAYOUT - (PHOSPHORIBULOKINASE-RXN (:LEFT-PRIMARIES RIBULOSE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES D-RIBULOSE-15-P2))
REACTION-LAYOUT - (RIBULP3EPIM-RXN (:LEFT-PRIMARIES RIBULOSE-5P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES XYLULOSE-5-PHOSPHATE))
REACTION-LAYOUT - (SEDOHEPTULOSE-BISPHOSPHATASE-RXN (:LEFT-PRIMARIES D-SEDOHEPTULOSE-1-7-P2) (:DIRECTION :L2R) (:RIGHT-PRIMARIES D-SEDOHEPTULOSE-7-P))
REACTION-LAYOUT - (2TRANSKETO-RXN (:LEFT-PRIMARIES XYLULOSE-5-PHOSPHATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GAP FRUCTOSE-6P))
REACTION-LAYOUT - (1TRANSKETO-RXN (:LEFT-PRIMARIES GAP D-SEDOHEPTULOSE-7-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XYLULOSE-5-PHOSPHATE RIBOSE-5P))
REACTION-LAYOUT - (F16BDEPHOS-RXN (:LEFT-PRIMARIES FRUCTOSE-16-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-6P))
REACTION-LAYOUT - (SEDOBISALDOL-RXN (:LEFT-PRIMARIES DIHYDROXY-ACETONE-PHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES D-SEDOHEPTULOSE-1-7-P2))
REACTION-LAYOUT - (F16ALDOLASE-RXN (:LEFT-PRIMARIES FRUCTOSE-16-DIPHOSPHATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GAP DIHYDROXY-ACETONE-PHOSPHATE))
REACTION-LAYOUT - (TRIOSEPISOMERIZATION-RXN (:LEFT-PRIMARIES GAP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROXY-ACETONE-PHOSPHATE))
REACTION-LAYOUT - (1.2.1.13-RXN (:LEFT-PRIMARIES GAP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DPG))
REACTION-LAYOUT - (PHOSGLYPHOS-RXN (:LEFT-PRIMARIES G3P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DPG))
REACTION-LAYOUT - (RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN (:LEFT-PRIMARIES D-RIBULOSE-15-P2) (:DIRECTION :L2R) (:RIGHT-PRIMARIES G3P))
REACTION-LIST - RIB5PISOM-RXN
REACTION-LIST - PHOSPHORIBULOKINASE-RXN
REACTION-LIST - RIBULP3EPIM-RXN
REACTION-LIST - SEDOHEPTULOSE-BISPHOSPHATASE-RXN
REACTION-LIST - 2TRANSKETO-RXN
REACTION-LIST - 1TRANSKETO-RXN
REACTION-LIST - F16BDEPHOS-RXN
REACTION-LIST - SEDOBISALDOL-RXN
REACTION-LIST - F16ALDOLASE-RXN
REACTION-LIST - TRIOSEPISOMERIZATION-RXN
REACTION-LIST - 1.2.1.13-RXN
REACTION-LIST - PHOSGLYPHOS-RXN
REACTION-LIST - RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN
SUPER-PATHWAYS - PHOTOALL-PWY
SYNONYMS - photosynthetic dark reactions
SYNONYMS - photosynthetic CO2 fixation
SYNONYMS - reductive pentose phosphate pathway
SYNONYMS - Calvin cycle
SYNONYMS - photosynthesis - dark reaction
SYNONYMS - carbon fixation
SYNONYMS - Calvin-Benson cycle
//
UNIQUE-ID - PWY-5913
TYPES - TCA-VARIANTS
COMMON-NAME - TCA cycle variation IV
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (L-ASPARTATE METHIONINE-SYN LYSINE-SYN THREONINE-BIOSYNTHESIS ISOLEUCINE-SYN)
PATHWAY-LINKS - (GLT ARGININE-SYN PROLINE-SYN)
PATHWAY-LINKS - (ACETYL-COA PYRUVDEHYD-PWY)
PREDECESSORS - (SUCCCOASYN-RXN SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN)
PREDECESSORS - (ASPAMINOTRANS-RXN PEPCARBOX-RXN)
PREDECESSORS - (MALATE-DEH-RXN PEPCARBOX-RXN)
PREDECESSORS - (CITSYN-RXN PEPCARBOX-RXN)
PREDECESSORS - (SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN FUMHYDR-RXN)
PREDECESSORS - (FUMHYDR-RXN MALATE-DEH-RXN)
PREDECESSORS - (GLUTDEHYD-RXN ISOCITDEH-RXN)
PREDECESSORS - (CITSYN-RXN MALATE-DEH-RXN)
PREDECESSORS - (ISOCITDEH-RXN ACONITATEHYDR-RXN)
PREDECESSORS - (ACONITATEHYDR-RXN ACONITATEDEHYDR-RXN)
PREDECESSORS - (ACONITATEDEHYDR-RXN CITSYN-RXN)
PRIMARIES - (SUCCCOASYN-RXN NIL (SUC-COA))
PRIMARIES - (SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN NIL (SUC))
PRIMARIES - (CITSYN-RXN (ACETYL-COA OXALACETIC_ACID) (CIT))
PRIMARIES - (FUMHYDR-RXN (MAL) (FUM))
PRIMARIES - (MALATE-DEH-RXN (OXALACETIC_ACID) (MAL))
REACTION-LAYOUT - (MALATE-DEH-RXN (:LEFT-PRIMARIES MAL) (:DIRECTION :R2L) (:RIGHT-PRIMARIES OXALACETIC_ACID))
REACTION-LAYOUT - (SUCCCOASYN-RXN (:LEFT-PRIMARIES SUC) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SUC-COA))
REACTION-LAYOUT - (ASPAMINOTRANS-RXN (:LEFT-PRIMARIES 2-KETOGLUTARATE L-ASPARTATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES OXALACETIC_ACID))
REACTION-LAYOUT - (PEPCARBOX-RXN (:LEFT-PRIMARIES OXALACETIC_ACID) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CARBON-DIOXIDE))
REACTION-LAYOUT - (GLUTDEHYD-RXN (:LEFT-PRIMARIES NADP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 2-KETOGLUTARATE))
REACTION-LAYOUT - (SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN (:LEFT-PRIMARIES SUC) (:DIRECTION :R2L) (:RIGHT-PRIMARIES FUM))
REACTION-LAYOUT - (ACONITATEDEHYDR-RXN (:LEFT-PRIMARIES CIT) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CIS-ACONITATE))
REACTION-LAYOUT - (CITSYN-RXN (:LEFT-PRIMARIES ACETYL-COA OXALACETIC_ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CIT))
REACTION-LAYOUT - (ACONITATEHYDR-RXN (:LEFT-PRIMARIES CIS-ACONITATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES THREO-DS-ISO-CITRATE))
REACTION-LAYOUT - (ISOCITDEH-RXN (:LEFT-PRIMARIES NADP THREO-DS-ISO-CITRATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CARBON-DIOXIDE 2-KETOGLUTARATE))
REACTION-LAYOUT - (FUMHYDR-RXN (:LEFT-PRIMARIES MAL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FUM))
REACTION-LIST - MALATE-DEH-RXN
REACTION-LIST - SUCCCOASYN-RXN
REACTION-LIST - ASPAMINOTRANS-RXN
REACTION-LIST - PEPCARBOX-RXN
REACTION-LIST - GLUTDEHYD-RXN
REACTION-LIST - SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN
REACTION-LIST - ACONITATEDEHYDR-RXN
REACTION-LIST - CITSYN-RXN
REACTION-LIST - ACONITATEHYDR-RXN
REACTION-LIST - ISOCITDEH-RXN
REACTION-LIST - FUMHYDR-RXN
SYNONYMS - TCA cycle -- obligate autotrophs
//
UNIQUE-ID - PWY-5690
TYPES - TCA-VARIANTS
COMMON-NAME - TCA cycle variation III (eukaryotic)
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |caspi|
IN-PATHWAY - PWY-5464
PREDECESSORS - (2OXOGLUTARATEDEH-RXN ISOCITRATE-DEHYDROGENASE-NAD+-RXN)
PREDECESSORS - (ISOCITRATE-DEHYDROGENASE-NAD+-RXN ACONITATEHYDR-RXN)
PREDECESSORS - (SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN SUCCCOASYN-RXN)
PREDECESSORS - (CITSYN-RXN MALATE-DEH-RXN)
PREDECESSORS - (MALATE-DEH-RXN FUMHYDR-RXN)
PREDECESSORS - (FUMHYDR-RXN)
PREDECESSORS - (SUCCCOASYN-RXN 2OXOGLUTARATEDEH-RXN)
PREDECESSORS - (ACONITATEHYDR-RXN ACONITATEDEHYDR-RXN)
PREDECESSORS - (ACONITATEDEHYDR-RXN CITSYN-RXN)
PREDECESSORS - (FUMHYDR-RXN SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN)
PRIMARIES - (CITSYN-RXN NIL NIL)
PRIMARIES - (MALATE-DEH-RXN (MAL) (OXALACETIC_ACID))
REACTION-LAYOUT - (MALATE-DEH-RXN (:LEFT-PRIMARIES MAL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OXALACETIC_ACID))
REACTION-LAYOUT - (ISOCITRATE-DEHYDROGENASE-NAD+-RXN (:LEFT-PRIMARIES THREO-DS-ISO-CITRATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-KETOGLUTARATE))
REACTION-LAYOUT - (SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN (:LEFT-PRIMARIES SUC) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FUM))
REACTION-LAYOUT - (ACONITATEDEHYDR-RXN (:LEFT-PRIMARIES CIT) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CIS-ACONITATE))
REACTION-LAYOUT - (CITSYN-RXN (:LEFT-PRIMARIES OXALACETIC_ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CIT))
REACTION-LAYOUT - (ACONITATEHYDR-RXN (:LEFT-PRIMARIES CIS-ACONITATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES THREO-DS-ISO-CITRATE))
REACTION-LAYOUT - (2OXOGLUTARATEDEH-RXN (:LEFT-PRIMARIES 2-KETOGLUTARATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SUC-COA))
REACTION-LAYOUT - (SUCCCOASYN-RXN (:LEFT-PRIMARIES SUC) (:DIRECTION :R2L) (:RIGHT-PRIMARIES SUC-COA))
REACTION-LAYOUT - (FUMHYDR-RXN (:LEFT-PRIMARIES MAL) (:DIRECTION :R2L) (:RIGHT-PRIMARIES FUM))
REACTION-LIST - MALATE-DEH-RXN
REACTION-LIST - ISOCITRATE-DEHYDROGENASE-NAD+-RXN
REACTION-LIST - SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN
REACTION-LIST - ACONITATEDEHYDR-RXN
REACTION-LIST - CITSYN-RXN
REACTION-LIST - ACONITATEHYDR-RXN
REACTION-LIST - 2OXOGLUTARATEDEH-RXN
REACTION-LIST - SUCCCOASYN-RXN
REACTION-LIST - FUMHYDR-RXN
SUPER-PATHWAYS - PWY-5464
SYNONYMS - TCA
SYNONYMS - TCA cycle -- aerobic respiration
SYNONYMS - tricarboxylic acid cycle
SYNONYMS - citric acid cycle
//
UNIQUE-ID - PWY-5172
TYPES - Acetyl-CoA-Biosynthesis
COMMON-NAME - acetyl-CoA biosynthesis (from citrate)
CITATIONS - :EV-COMP-AINF:3497824358:liya
IN-PATHWAY - PWY-5173
PATHWAY-LINKS - (ACETYL-COA PWY-5080 PWY1F-FLAVSYN PWY-922)
PREDECESSORS - (ATP-CITRATE-PRO-S--LYASE-RXN)
PRIMARIES - (ATP-CITRATE-PRO-S--LYASE-RXN (CIT) (ACETYL-COA))
REACTION-LAYOUT - (ATP-CITRATE-PRO-S--LYASE-RXN (:LEFT-PRIMARIES ACETYL-COA) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CIT))
REACTION-LIST - ATP-CITRATE-PRO-S--LYASE-RXN
SUPER-PATHWAYS - PWY-5173
//
UNIQUE-ID - PYRUVDEHYD-PWY
TYPES - Acetyl-CoA-Biosynthesis
TYPES - CARBOXYLATES-DEG
COMMON-NAME - acetyl-CoA biosynthesis (from pyruvate)
CITATIONS - :EV-COMP-AINF:3497824359:liya
CREDITS - |caspi|
CREDITS - SRI
CREDITS - O0-3
CREDITS - |ingraham|
IN-PATHWAY - PWY-5464
IN-PATHWAY - PWY-5173
KEY-REACTIONS - RXN0-1134
PATHWAY-LINKS - (PYRUVATE GLYCOLYSIS PWY-1042)
PATHWAY-LINKS - (ACETYL-COA PWY-4381)
PREDECESSORS - (RXN0-1133 RXN0-1134)
PREDECESSORS - (RXN0-1132 RXN0-1133)
PREDECESSORS - (RXN0-1134 RXN0-1132)
REACTION-LAYOUT - (RXN0-1132 (:LEFT-PRIMARIES |Pyruvate-dehydrogenase-dihydrolipoate|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Pyruvate-dehydrogenase-lipoate|))
REACTION-LAYOUT - (RXN0-1133 (:LEFT-PRIMARIES |Pyruvate-dehydrogenase-dihydrolipoate|) (:DIRECTION :R2L) (:RIGHT-PRIMARIES |Pyruvate-dehydrogenase-acetylDHlipoyl|))
REACTION-LAYOUT - (RXN0-1134 (:LEFT-PRIMARIES |Pyruvate-dehydrogenase-lipoate| PYRUVATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Pyruvate-dehydrogenase-acetylDHlipoyl|))
REACTION-LIST - RXN0-1132
REACTION-LIST - RXN0-1133
REACTION-LIST - RXN0-1134
SUPER-PATHWAYS - PWY-5464
SUPER-PATHWAYS - PWY-5173
SYNONYMS - pyruvate dehydrogenase complex
//
UNIQUE-ID - PWY-5084
TYPES - Respiration
TYPES - Amino-Acid-Degradation
COMMON-NAME - 2-ketoglutarate dehydrogenase complex
CITATIONS - :EV-COMP-AINF:3497824359:liya
CREDITS - SRI
CREDITS - |caspi|
KEY-REACTIONS - 2OXOGLUTDECARB-RXN
PREDECESSORS - (RXN0-1147 2OXOGLUTDECARB-RXN)
PREDECESSORS - (RXN-7716 RXN0-1147)
PREDECESSORS - (2OXOGLUTDECARB-RXN RXN-7716)
REACTION-LAYOUT - (RXN-7716 (:LEFT-PRIMARIES |Oxo-glutarate-dehydrogenase-DH-lipoyl|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Oxo-glutarate-dehydrogenase-lipoyl|))
REACTION-LAYOUT - (RXN0-1147 (:LEFT-PRIMARIES |Oxo-glutarate-dehydrogenase-DH-lipoyl|) (:DIRECTION :R2L) (:RIGHT-PRIMARIES |Oxo-glutarate-dehydro-suc-DH-lipoyl|))
REACTION-LAYOUT - (2OXOGLUTDECARB-RXN (:LEFT-PRIMARIES |Oxo-glutarate-dehydrogenase-lipoyl|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Oxo-glutarate-dehydro-suc-DH-lipoyl|))
REACTION-LIST - RXN-7716
REACTION-LIST - RXN0-1147
REACTION-LIST - 2OXOGLUTDECARB-RXN
SYNONYMS - 2-oxoglutarate dehydrogenase complex
//
UNIQUE-ID - PWY-4302
TYPES - AEROBIC-RESPIRATION
COMMON-NAME - aerobic respiration -- electron donor III
CITATIONS - :EV-COMP-AINF:3497824358:liya
PREDECESSORS - (RXN-6883 RXN-6884)
PREDECESSORS - (RXN-6884 RXN-6883)
PREDECESSORS - (RXN-6883 SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN)
PREDECESSORS - (SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN RXN-6883)
PREDECESSORS - (RXN-6883 NADH-DEHYDROG-A-RXN)
PREDECESSORS - (NADH-DEHYDROG-A-RXN RXN-6883)
PRIMARIES - (RXN-6884 (|Reduced-Ferroproteins| OXYGEN-MOLECULE) (|Oxidized-Ferroproteins| WATER))
PRIMARIES - (SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN (|Ubiquinones| SUC) (|Ubiquinols| FUM))
PRIMARIES - (NADH-DEHYDROG-A-RXN (|Ubiquinones| NADH) (|Ubiquinols| NAD))
PRIMARIES - (RXN-6883 (|Oxidized-Ferroproteins| |Ubiquinols|) (|Reduced-Ferroproteins| |Ubiquinones|))
REACTION-LAYOUT - (NADH-DEHYDROG-A-RXN (:LEFT-PRIMARIES |Ubiquinones| NADH) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Ubiquinols| NAD))
REACTION-LAYOUT - (SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN (:LEFT-PRIMARIES SUC |Ubiquinones|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Ubiquinols| FUM))
REACTION-LAYOUT - (RXN-6884 (:LEFT-PRIMARIES OXYGEN-MOLECULE |Reduced-Ferroproteins|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES WATER |Oxidized-Ferroproteins|))
REACTION-LAYOUT - (RXN-6883 (:LEFT-PRIMARIES |Ubiquinols| |Oxidized-Ferroproteins|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Ubiquinones| |Reduced-Ferroproteins|))
REACTION-LIST - NADH-DEHYDROG-A-RXN
REACTION-LIST - SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN
REACTION-LIST - RXN-6884
REACTION-LIST - RXN-6883
SYNONYMS - aerobic respiration -- alternative oxidase pathway
SYNONYMS - alternative oxidase pathway
//
UNIQUE-ID - PWY-3781
TYPES - AEROBIC-RESPIRATION
COMMON-NAME - aerobic respiration -- electron donor II
CITATIONS - :EV-COMP-AINF:3497824358:liya
PREDECESSORS - (SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN 1.10.2.2-RXN)
PREDECESSORS - (NADH-DEHYDROG-A-RXN 1.10.2.2-RXN)
PREDECESSORS - (1.10.2.2-RXN SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN)
PREDECESSORS - (1.10.2.2-RXN NADH-DEHYDROG-A-RXN)
PREDECESSORS - (CYTOCHROME-C-OXIDASE-RXN 1.10.2.2-RXN)
PREDECESSORS - (1.10.2.2-RXN CYTOCHROME-C-OXIDASE-RXN)
PRIMARIES - (NADH-DEHYDROG-A-RXN (|Ubiquinones| NADH) (|Ubiquinols| NAD))
PRIMARIES - (SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN (|Ubiquinones| SUC) (|Ubiquinols| FUM))
PRIMARIES - (CYTOCHROME-C-OXIDASE-RXN (OXYGEN-MOLECULE) (WATER))
PRIMARIES - (1.10.2.2-RXN (|Cytochromes-C| |Ubiquinols|) (|Cytochromes-C-Reduced| |Ubiquinones|))
REACTION-LAYOUT - (CYTOCHROME-C-OXIDASE-RXN (:LEFT-PRIMARIES |Cytochromes-C-Reduced| OXYGEN-MOLECULE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Cytochromes-C| WATER))
REACTION-LAYOUT - (NADH-DEHYDROG-A-RXN (:LEFT-PRIMARIES |Ubiquinones| NADH) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Ubiquinols| NAD))
REACTION-LAYOUT - (SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN (:LEFT-PRIMARIES SUC |Ubiquinones|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Ubiquinols| FUM))
REACTION-LAYOUT - (1.10.2.2-RXN (:LEFT-PRIMARIES |Ubiquinols| |Cytochromes-C|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Ubiquinones| |Cytochromes-C-Reduced|))
REACTION-LIST - CYTOCHROME-C-OXIDASE-RXN
REACTION-LIST - NADH-DEHYDROG-A-RXN
REACTION-LIST - SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN
REACTION-LIST - 1.10.2.2-RXN
//
UNIQUE-ID - PWY-6118
TYPES - OTHER-ENERGY
COMMON-NAME - glycerol-3-phosphate shuttle
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (DIHYDROXY-ACETONE-PHOSPHATE GLYCOLYSIS)
PREDECESSORS - (1.1.1.8-RXN RXN-9927)
PREDECESSORS - (RXN-9927 1.1.1.8-RXN)
PRIMARIES - (1.1.1.8-RXN (DIHYDROXY-ACETONE-PHOSPHATE) (GLYCEROL-3P))
REACTION-LAYOUT - (RXN-9927 (:LEFT-PRIMARIES GLYCEROL-3P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROXY-ACETONE-PHOSPHATE))
REACTION-LAYOUT - (1.1.1.8-RXN (:LEFT-PRIMARIES GLYCEROL-3P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DIHYDROXY-ACETONE-PHOSPHATE))
REACTION-LIST - RXN-9927
REACTION-LIST - 1.1.1.8-RXN
SYNONYMS - G3P shuttle
SYNONYMS - glycerol-3-P shuttle
//
UNIQUE-ID - NONOXIPENT-PWY
TYPES - Pentose-Phosphate-Cycle
COMMON-NAME - pentose phosphate pathway (non-oxidative branch)
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - |riley|
CREDITS - O-18
CREDITS - O0-3
CREDITS - |ingraham|
IN-PATHWAY - PENTOSE-P-PWY
PATHWAY-LINKS - (ERYTHROSE-4P ARO-PWY)
PATHWAY-LINKS - (RIBULOSE-5P OXIDATIVEPENT-PWY)
PREDECESSORS - (2TRANSKETO-RXN TRANSALDOL-RXN)
PREDECESSORS - (TRANSALDOL-RXN 1TRANSKETO-RXN)
PREDECESSORS - (1TRANSKETO-RXN RIBULP3EPIM-RXN)
PREDECESSORS - (1TRANSKETO-RXN RIB5PISOM-RXN)
PRIMARIES - (2TRANSKETO-RXN (ERYTHROSE-4P) (GAP))
PRIMARIES - (TRANSALDOL-RXN NIL (FRUCTOSE-6P ERYTHROSE-4P))
REACTION-LAYOUT - (RIB5PISOM-RXN (:LEFT-PRIMARIES RIBOSE-5P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES RIBULOSE-5P))
REACTION-LAYOUT - (RIBULP3EPIM-RXN (:LEFT-PRIMARIES RIBULOSE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XYLULOSE-5-PHOSPHATE))
REACTION-LAYOUT - (1TRANSKETO-RXN (:LEFT-PRIMARIES GAP D-SEDOHEPTULOSE-7-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES XYLULOSE-5-PHOSPHATE RIBOSE-5P))
REACTION-LAYOUT - (2TRANSKETO-RXN (:LEFT-PRIMARIES XYLULOSE-5-PHOSPHATE ERYTHROSE-4P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GAP FRUCTOSE-6P))
REACTION-LAYOUT - (TRANSALDOL-RXN (:LEFT-PRIMARIES D-SEDOHEPTULOSE-7-P GAP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ERYTHROSE-4P FRUCTOSE-6P))
REACTION-LIST - RIB5PISOM-RXN
REACTION-LIST - RIBULP3EPIM-RXN
REACTION-LIST - 1TRANSKETO-RXN
REACTION-LIST - 2TRANSKETO-RXN
REACTION-LIST - TRANSALDOL-RXN
SUPER-PATHWAYS - PENTOSE-P-PWY
//
UNIQUE-ID - OXIDATIVEPENT-PWY
TYPES - Pentose-Phosphate-Cycle
COMMON-NAME - pentose phosphate pathway (oxidative branch)
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - |riley|
CREDITS - O-18
CREDITS - O0-3
CREDITS - |ingraham|
IN-PATHWAY - PENTOSE-P-PWY
PATHWAY-LINKS - (GLC-6-P PWY-842)
PATHWAY-LINKS - (RIBULOSE-5P NONOXIPENT-PWY)
PREDECESSORS - (6PGLUCONDEHYDROG-RXN 6PGLUCONOLACT-RXN)
PREDECESSORS - (6PGLUCONOLACT-RXN GLU6PDEHYDROG-RXN)
PREDECESSORS - (GLU6PDEHYDROG-RXN)
REACTION-LAYOUT - (GLU6PDEHYDROG-RXN (:LEFT-PRIMARIES GLC-6-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES D-6-P-GLUCONO-DELTA-LACTONE))
REACTION-LAYOUT - (6PGLUCONDEHYDROG-RXN (:LEFT-PRIMARIES CPD-2961) (:DIRECTION :L2R) (:RIGHT-PRIMARIES RIBULOSE-5P))
REACTION-LAYOUT - (6PGLUCONOLACT-RXN (:LEFT-PRIMARIES D-6-P-GLUCONO-DELTA-LACTONE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-2961))
REACTION-LIST - GLU6PDEHYDROG-RXN
REACTION-LIST - 6PGLUCONDEHYDROG-RXN
REACTION-LIST - 6PGLUCONOLACT-RXN
SUPER-PATHWAYS - PENTOSE-P-PWY
//
UNIQUE-ID - P21-PWY
TYPES - Pentose-Phosphate-Cycle
COMMON-NAME - pentose phosphate pathway (partial)
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - O-18
CREDITS - |pellegrini-toole|
PATHWAY-LINKS - (GAP GLYCOLYSIS)
PREDECESSORS - (1TRANSKETO-RXN 2TRANSKETO-RXN)
PREDECESSORS - (1TRANSKETO-RXN RIBULP3EPIM-RXN)
PRIMARIES - (1TRANSKETO-RXN (XYLULOSE-5-PHOSPHATE) (GAP))
PRIMARIES - (2TRANSKETO-RXN (ERYTHROSE-4P) (GAP))
REACTION-LAYOUT - (2TRANSKETO-RXN (:LEFT-PRIMARIES XYLULOSE-5-PHOSPHATE ERYTHROSE-4P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GAP))
REACTION-LAYOUT - (1TRANSKETO-RXN (:LEFT-PRIMARIES GAP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES XYLULOSE-5-PHOSPHATE))
REACTION-LAYOUT - (RIBULP3EPIM-RXN (:LEFT-PRIMARIES RIBULOSE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XYLULOSE-5-PHOSPHATE))
REACTION-LIST - 2TRANSKETO-RXN
REACTION-LIST - 1TRANSKETO-RXN
REACTION-LIST - RIBULP3EPIM-RXN
SYNONYMS - pentose phosphate pathway, Mycoplasma pneumonia
//
UNIQUE-ID - PWY-5484
TYPES - GLYCOLYSIS-VARIANTS
COMMON-NAME - glycolysis II
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (FRUCTOSE-6P MANNCAT-PWY PWY-3861 SUCUTIL-PWY)
PATHWAY-LINKS - (PYRUVATE |Amino-Acid-Biosynthesis| PYRUVDEHYD-PWY)
PATHWAY-LINKS - (GLC-6-P PENTOSE-P-PWY (PWY-842 . :INCOMING))
PREDECESSORS - (F16BDEPHOS-RXN 6PFRUCTPHOS-RXN)
PREDECESSORS - (6PFRUCTPHOS-RXN F16BDEPHOS-RXN)
PREDECESSORS - (PEPDEPHOS-RXN PEPSYNTH-RXN)
PREDECESSORS - (PEPSYNTH-RXN PEPDEPHOS-RXN)
PREDECESSORS - (F16ALDOLASE-RXN 6PFRUCTPHOS-RXN)
PREDECESSORS - (TRIOSEPISOMERIZATION-RXN F16ALDOLASE-RXN)
PREDECESSORS - (GAPOXNPHOSPHN-RXN TRIOSEPISOMERIZATION-RXN F16ALDOLASE-RXN)
PREDECESSORS - (PHOSGLYPHOS-RXN GAPOXNPHOSPHN-RXN)
PREDECESSORS - (3PGAREARR-RXN PHOSGLYPHOS-RXN)
PREDECESSORS - (2PGADEHYDRAT-RXN 3PGAREARR-RXN)
PREDECESSORS - (PEPDEPHOS-RXN 2PGADEHYDRAT-RXN)
REACTION-LAYOUT - (F16BDEPHOS-RXN (:LEFT-PRIMARIES FRUCTOSE-16-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-6P))
REACTION-LAYOUT - (PEPSYNTH-RXN (:LEFT-PRIMARIES PYRUVATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE))
REACTION-LAYOUT - (6PFRUCTPHOS-RXN (:LEFT-PRIMARIES FRUCTOSE-6P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-16-DIPHOSPHATE))
REACTION-LAYOUT - (F16ALDOLASE-RXN (:LEFT-PRIMARIES FRUCTOSE-16-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GAP DIHYDROXY-ACETONE-PHOSPHATE))
REACTION-LAYOUT - (TRIOSEPISOMERIZATION-RXN (:LEFT-PRIMARIES GAP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DIHYDROXY-ACETONE-PHOSPHATE))
REACTION-LAYOUT - (GAPOXNPHOSPHN-RXN (:LEFT-PRIMARIES GAP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DPG))
REACTION-LAYOUT - (PHOSGLYPHOS-RXN (:LEFT-PRIMARIES G3P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DPG))
REACTION-LAYOUT - (3PGAREARR-RXN (:LEFT-PRIMARIES G3P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-PG))
REACTION-LAYOUT - (2PGADEHYDRAT-RXN (:LEFT-PRIMARIES 2-PG) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE))
REACTION-LAYOUT - (PEPDEPHOS-RXN (:LEFT-PRIMARIES PYRUVATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE))
REACTION-LIST - F16BDEPHOS-RXN
REACTION-LIST - PEPSYNTH-RXN
REACTION-LIST - 6PFRUCTPHOS-RXN
REACTION-LIST - F16ALDOLASE-RXN
REACTION-LIST - TRIOSEPISOMERIZATION-RXN
REACTION-LIST - GAPOXNPHOSPHN-RXN
REACTION-LIST - PHOSGLYPHOS-RXN
REACTION-LIST - 3PGAREARR-RXN
REACTION-LIST - 2PGADEHYDRAT-RXN
REACTION-LIST - PEPDEPHOS-RXN
SUPER-PATHWAYS - PWY-3801
//
UNIQUE-ID - GLYCOLYSIS
TYPES - GLYCOLYSIS-VARIANTS
COMMON-NAME - glycolysis I
CREDITS - O0-3
CREDITS - |ingraham|
PATHWAY-LINKS - (FRUCTOSE-6P MANNCAT-PWY PWY-3861 SUCUTIL-PWY)
PATHWAY-LINKS - (G3P SERSYN-PWY)
PATHWAY-LINKS - (PYRUVATE |Amino-Acid-Biosynthesis| PYRUVDEHYD-PWY)
PATHWAY-LINKS - (GLC-6-P PENTOSE-P-PWY (PWY-842 . :INCOMING))
PREDECESSORS - (F16BDEPHOS-RXN 6PFRUCTPHOS-RXN)
PREDECESSORS - (6PFRUCTPHOS-RXN F16BDEPHOS-RXN)
PREDECESSORS - (PEPDEPHOS-RXN PEPSYNTH-RXN)
PREDECESSORS - (PEPSYNTH-RXN PEPDEPHOS-RXN)
PREDECESSORS - (PEPDEPHOS-RXN 2PGADEHYDRAT-RXN)
PREDECESSORS - (2PGADEHYDRAT-RXN 3PGAREARR-RXN)
PREDECESSORS - (3PGAREARR-RXN PHOSGLYPHOS-RXN)
PREDECESSORS - (PHOSGLYPHOS-RXN GAPOXNPHOSPHN-RXN)
PREDECESSORS - (GAPOXNPHOSPHN-RXN TRIOSEPISOMERIZATION-RXN F16ALDOLASE-RXN)
PREDECESSORS - (TRIOSEPISOMERIZATION-RXN F16ALDOLASE-RXN)
PREDECESSORS - (F16ALDOLASE-RXN 6PFRUCTPHOS-RXN)
PREDECESSORS - (6PFRUCTPHOS-RXN PGLUCISOM-RXN)
PREDECESSORS - (PGLUCISOM-RXN)
REACTION-LAYOUT - (F16BDEPHOS-RXN (:LEFT-PRIMARIES FRUCTOSE-16-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-6P))
REACTION-LAYOUT - (PEPSYNTH-RXN (:LEFT-PRIMARIES PYRUVATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE))
REACTION-LAYOUT - (PGLUCISOM-RXN (:LEFT-PRIMARIES GLC-6-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-6P))
REACTION-LAYOUT - (6PFRUCTPHOS-RXN (:LEFT-PRIMARIES FRUCTOSE-6P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-16-DIPHOSPHATE))
REACTION-LAYOUT - (F16ALDOLASE-RXN (:LEFT-PRIMARIES FRUCTOSE-16-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GAP DIHYDROXY-ACETONE-PHOSPHATE))
REACTION-LAYOUT - (TRIOSEPISOMERIZATION-RXN (:LEFT-PRIMARIES GAP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DIHYDROXY-ACETONE-PHOSPHATE))
REACTION-LAYOUT - (GAPOXNPHOSPHN-RXN (:LEFT-PRIMARIES GAP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DPG))
REACTION-LAYOUT - (PHOSGLYPHOS-RXN (:LEFT-PRIMARIES G3P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DPG))
REACTION-LAYOUT - (3PGAREARR-RXN (:LEFT-PRIMARIES G3P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-PG))
REACTION-LAYOUT - (2PGADEHYDRAT-RXN (:LEFT-PRIMARIES 2-PG) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE))
REACTION-LAYOUT - (PEPDEPHOS-RXN (:LEFT-PRIMARIES PYRUVATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE))
REACTION-LIST - F16BDEPHOS-RXN
REACTION-LIST - PEPSYNTH-RXN
REACTION-LIST - PGLUCISOM-RXN
REACTION-LIST - 6PFRUCTPHOS-RXN
REACTION-LIST - F16ALDOLASE-RXN
REACTION-LIST - TRIOSEPISOMERIZATION-RXN
REACTION-LIST - GAPOXNPHOSPHN-RXN
REACTION-LIST - PHOSGLYPHOS-RXN
REACTION-LIST - 3PGAREARR-RXN
REACTION-LIST - 2PGADEHYDRAT-RXN
REACTION-LIST - PEPDEPHOS-RXN
SYNONYMS - Embden-Meyerhof pathway
SYNONYMS - glucose degradation
SYNONYMS - Embden-Meyerhof-Parnas pathway
SYNONYMS - EMP pathway
SYNONYMS - glycolysis (plastidic)
//
UNIQUE-ID - PWY-1042
TYPES - GLYCOLYSIS-VARIANTS
COMMON-NAME - glycolysis IV (plant cytosol)
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |tissier|
IN-PATHWAY - PWY-5464
KEY-REACTIONS - 1.2.1.9-RXN
KEY-REACTIONS - 2.7.1.90-RXN
PATHWAY-LINKS - (PYRUVATE PYRUVDEHYD-PWY)
PATHWAY-LINKS - (FRUCTOSE-6P PWY-621)
PREDECESSORS - (F16ALDOLASE-RXN 6PFRUCTPHOS-RXN)
PREDECESSORS - (F16ALDOLASE-RXN 2.7.1.90-RXN)
PREDECESSORS - (TRIOSEPISOMERIZATION-RXN F16ALDOLASE-RXN)
PREDECESSORS - (GAPOXNPHOSPHN-RXN TRIOSEPISOMERIZATION-RXN)
PREDECESSORS - (GAPOXNPHOSPHN-RXN F16ALDOLASE-RXN)
PREDECESSORS - (PHOSGLYPHOS-RXN GAPOXNPHOSPHN-RXN)
PREDECESSORS - (3PGAREARR-RXN PHOSGLYPHOS-RXN)
PREDECESSORS - (2PGADEHYDRAT-RXN 3PGAREARR-RXN)
PREDECESSORS - (PEPDEPHOS-RXN 2PGADEHYDRAT-RXN)
PREDECESSORS - (1.2.1.9-RXN TRIOSEPISOMERIZATION-RXN)
PREDECESSORS - (3PGAREARR-RXN 1.2.1.9-RXN)
REACTION-LAYOUT - (1.2.1.9-RXN (:LEFT-PRIMARIES GAP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES G3P))
REACTION-LAYOUT - (PEPDEPHOS-RXN (:LEFT-PRIMARIES PYRUVATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE))
REACTION-LAYOUT - (2PGADEHYDRAT-RXN (:LEFT-PRIMARIES 2-PG) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE))
REACTION-LAYOUT - (3PGAREARR-RXN (:LEFT-PRIMARIES G3P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-PG))
REACTION-LAYOUT - (PHOSGLYPHOS-RXN (:LEFT-PRIMARIES G3P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DPG))
REACTION-LAYOUT - (GAPOXNPHOSPHN-RXN (:LEFT-PRIMARIES GAP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DPG))
REACTION-LAYOUT - (TRIOSEPISOMERIZATION-RXN (:LEFT-PRIMARIES GAP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DIHYDROXY-ACETONE-PHOSPHATE))
REACTION-LAYOUT - (F16ALDOLASE-RXN (:LEFT-PRIMARIES FRUCTOSE-16-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GAP DIHYDROXY-ACETONE-PHOSPHATE))
REACTION-LAYOUT - (2.7.1.90-RXN (:LEFT-PRIMARIES FRUCTOSE-6P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-16-DIPHOSPHATE))
REACTION-LAYOUT - (6PFRUCTPHOS-RXN (:LEFT-PRIMARIES FRUCTOSE-6P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-16-DIPHOSPHATE))
REACTION-LIST - 1.2.1.9-RXN
REACTION-LIST - PEPDEPHOS-RXN
REACTION-LIST - 2PGADEHYDRAT-RXN
REACTION-LIST - 3PGAREARR-RXN
REACTION-LIST - PHOSGLYPHOS-RXN
REACTION-LIST - GAPOXNPHOSPHN-RXN
REACTION-LIST - TRIOSEPISOMERIZATION-RXN
REACTION-LIST - F16ALDOLASE-RXN
REACTION-LIST - 2.7.1.90-RXN
REACTION-LIST - 6PFRUCTPHOS-RXN
SUPER-PATHWAYS - PWY-5464
SYNONYMS - glycolysis 4
//
UNIQUE-ID - PWY-5271
TYPES - Abscisic-Acid-Degradation
TYPES - Abscisic-Acid-Derivative-Biosynthesis
COMMON-NAME - phaseic acid biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |tissier|
PATHWAY-LINKS - (CPD-693 PWY-695)
PREDECESSORS - (1.14.13.93-RXN)
PREDECESSORS - (RXN-8153 1.14.13.93-RXN)
PREDECESSORS - (RXN-8154 RXN-8153)
PRIMARIES - (RXN-8154 (CPD-7725) (CPD-7726))
PRIMARIES - (RXN-8153 (CPD-7234) (CPD-7725))
PRIMARIES - (1.14.13.93-RXN (CPD-693) (CPD-7234))
REACTION-LAYOUT - (RXN-8154 (:LEFT-PRIMARIES CPD-7725) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7726))
REACTION-LAYOUT - (1.14.13.93-RXN (:LEFT-PRIMARIES CPD-693) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7234))
REACTION-LAYOUT - (RXN-8153 (:LEFT-PRIMARIES CPD-7234) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7725))
REACTION-LIST - RXN-8154
REACTION-LIST - 1.14.13.93-RXN
REACTION-LIST - RXN-8153
SYNONYMS - abscisate degradation I
SYNONYMS - abscisic acid degradation I
SYNONYMS - ABA hydroxylation pathway
SYNONYMS - abscisic acid hydroxylation pathway
SYNONYMS - 8'-hydroxylation pathway
//
UNIQUE-ID - PWY-102
TYPES - Metabolic-Clusters
TYPES - Inactivation
TYPES - GIBBERELLINS-DEGRADATION
COMMON-NAME - gibberellin inactivation
CITATIONS - :EV-COMP-AINF:3497824358:liya
PREDECESSORS - (RXN-886)
PREDECESSORS - (RXN-991)
PREDECESSORS - (RXN-947)
PREDECESSORS - (RXN-292 RXN-6550)
PREDECESSORS - (RXN-118 RXN-115)
PREDECESSORS - (RXN-113)
PREDECESSORS - (RXN-114 RXN-113)
PREDECESSORS - (RXN-171)
PREDECESSORS - (RXN-172 RXN-171)
PRIMARIES - (RXN-886 (CPD-638) (CPD-885))
PRIMARIES - (RXN-991 (CPD-695) (CPD-477))
PRIMARIES - (RXN-947 (CPD1F-95) (CPD-475))
PRIMARIES - (RXN-292 (CPD-6224) (CPD-632))
PRIMARIES - (RXN-6550 (CPD1F-137) (CPD-6224))
PRIMARIES - (RXN1F-165 (CPD1F-134) (CPD1F-137))
PRIMARIES - (RXN-172 (CPD-482) (CPD-498))
PRIMARIES - (RXN-171 (CPD1F-134) (CPD-482))
PRIMARIES - (RXN1F-170 (CPD1F-140) (CPD1F-139))
PRIMARIES - (RXN-114 (CPD-236) (CPD-251))
PRIMARIES - (RXN-113 (CPD1F-140) (CPD-236))
PRIMARIES - (RXN-118 (CPD-204) (CPD-229))
PRIMARIES - (RXN-115 (CPD1F-139) (CPD-204))
REACTION-LAYOUT - (RXN-886 (:LEFT-PRIMARIES CPD-638) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-885))
REACTION-LAYOUT - (RXN-991 (:LEFT-PRIMARIES CPD-695) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-477))
REACTION-LAYOUT - (RXN-947 (:LEFT-PRIMARIES CPD1F-95) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-475))
REACTION-LAYOUT - (RXN-292 (:LEFT-PRIMARIES CPD-6224) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-632))
REACTION-LAYOUT - (RXN-6550 (:LEFT-PRIMARIES CPD1F-137) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6224))
REACTION-LAYOUT - (RXN-172 (:LEFT-PRIMARIES CPD-482) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-498))
REACTION-LAYOUT - (RXN-171 (:LEFT-PRIMARIES CPD1F-134) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-482))
REACTION-LAYOUT - (RXN-114 (:LEFT-PRIMARIES CPD-236) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-251))
REACTION-LAYOUT - (RXN-115 (:LEFT-PRIMARIES CPD1F-139) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-204))
REACTION-LAYOUT - (RXN-118 (:LEFT-PRIMARIES CPD-204) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-229))
REACTION-LAYOUT - (RXN-113 (:LEFT-PRIMARIES CPD1F-140) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-236))
REACTION-LIST - RXN-886
REACTION-LIST - RXN-991
REACTION-LIST - RXN-947
REACTION-LIST - RXN-292
REACTION-LIST - RXN-6550
REACTION-LIST - RXN-172
REACTION-LIST - RXN-171
REACTION-LIST - RXN-114
REACTION-LIST - RXN-115
REACTION-LIST - RXN-118
REACTION-LIST - RXN-113
SYNONYMS - gibberellin 2β-hydroxylation
//
UNIQUE-ID - PWY-2841
TYPES - CYTOKININS-DEGRADATION
TYPES - Metabolic-Clusters
COMMON-NAME - cytokinins degradation
CITATIONS - :EV-COMP-AINF:3497824358:liya
PREDECESSORS - (RXN-4681)
PREDECESSORS - (RXN-4662)
PREDECESSORS - (RXN-4661)
PREDECESSORS - (RXN-4641)
PREDECESSORS - (RXN-4621)
PRIMARIES - (RXN-4621 (CPD-4209) (PRENAL ADENINE))
PRIMARIES - (RXN-4641 (CPD-4207) (ADENOSINE PRENAL))
PRIMARIES - (RXN-4661 (CPD-4210) (ADENINE CPD-4483))
PRIMARIES - (RXN-4662 (CPD-4441) (CPD-4482 ADENINE))
PRIMARIES - (RXN-4681 (CPD-4208) (ADENOSINE CPD-4483))
REACTION-LAYOUT - (RXN-4681 (:LEFT-PRIMARIES CPD-4208) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4483 ADENOSINE))
REACTION-LAYOUT - (RXN-4662 (:LEFT-PRIMARIES CPD-4441) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ADENINE CPD-4482))
REACTION-LAYOUT - (RXN-4661 (:LEFT-PRIMARIES CPD-4210) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4483 ADENINE))
REACTION-LAYOUT - (RXN-4641 (:LEFT-PRIMARIES CPD-4207) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PRENAL ADENOSINE))
REACTION-LAYOUT - (RXN-4621 (:LEFT-PRIMARIES CPD-4209) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ADENINE PRENAL))
REACTION-LIST - RXN-4681
REACTION-LIST - RXN-4662
REACTION-LIST - RXN-4661
REACTION-LIST - RXN-4641
REACTION-LIST - RXN-4621
SYNONYMS - Cytokinins oxidation
//
UNIQUE-ID - PWY-4261
TYPES - GLYCEROL-DEG
TYPES - Fatty-Acid-and-Lipid-Degradation
COMMON-NAME - glycerol degradation IV
CITATIONS - :EV-COMP-AINF:3497824357:liya
PATHWAY-LINKS - (DIHYDROXY-ACETONE-PHOSPHATE GLUCONEO-PWY GLYCOLYSIS-VARIANTS)
PREDECESSORS - (RXN-9927 GLYCEROL-KIN-RXN)
PRIMARIES - (RXN-9927 (GLYCEROL-3P) (DIHYDROXY-ACETONE-PHOSPHATE))
PRIMARIES - (GLYCEROL-KIN-RXN (GLYCEROL) (GLYCEROL-3P))
REACTION-LAYOUT - (RXN-9927 (:LEFT-PRIMARIES GLYCEROL-3P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROXY-ACETONE-PHOSPHATE))
REACTION-LAYOUT - (GLYCEROL-KIN-RXN (:LEFT-PRIMARIES GLYCEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLYCEROL-3P))
REACTION-LIST - RXN-9927
REACTION-LIST - GLYCEROL-KIN-RXN
//
UNIQUE-ID - LIPASYN-PWY
TYPES - Metabolic-Clusters
TYPES - Fatty-Acid-and-Lipid-Degradation
COMMON-NAME - phospholipases
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - |zhang|
PATHWAY-LINKS - (INOSITOL-1-4-5-TRISPHOSPHATE PWY-4541)
PRIMARIES - (3.1.4.11-RXN (PHOSPHATIDYL-MYO-INOSITOL-45-BISPHOSPHA) (DIACYLGLYCEROL))
PRIMARIES - (PHOSPHOLIPASE-C-RXN (PHOSPHATIDYLCHOLINE) (DIACYLGLYCEROL))
PRIMARIES - (PHOSPHOLIPASE-A2-RXN (PHOSPHATIDYLCHOLINE) (|1-Acylglycero-Phosphocholines| |Fatty-Acids|))
PRIMARIES - (PHOSPHOLIPASE-A1-RXN (PHOSPHATIDYLCHOLINE) (|2-Acylglycero-Phosphocholines|))
PRIMARIES - (PHOSCHOL-RXN (PHOSPHATIDYLCHOLINE) (L-PHOSPHATIDATE))
REACTION-LAYOUT - (PHOSPHOLIPASE-C-RXN (:LEFT-PRIMARIES PHOSPHATIDYLCHOLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIACYLGLYCEROL))
REACTION-LAYOUT - (PHOSPHOLIPASE-A1-RXN (:LEFT-PRIMARIES PHOSPHATIDYLCHOLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |2-Acylglycero-Phosphocholines|))
REACTION-LAYOUT - (PHOSPHOLIPASE-A2-RXN (:LEFT-PRIMARIES PHOSPHATIDYLCHOLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |1-Acylglycero-Phosphocholines|))
REACTION-LAYOUT - (PHOSCHOL-RXN (:LEFT-PRIMARIES PHOSPHATIDYLCHOLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-PHOSPHATIDATE))
REACTION-LAYOUT - (3.1.4.11-RXN (:LEFT-PRIMARIES PHOSPHATIDYL-MYO-INOSITOL-45-BISPHOSPHA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INOSITOL-1-4-5-TRISPHOSPHATE DIACYLGLYCEROL))
REACTION-LIST - PHOSPHOLIPASE-C-RXN
REACTION-LIST - PHOSPHOLIPASE-A1-RXN
REACTION-LIST - PHOSPHOLIPASE-A2-RXN
REACTION-LIST - PHOSCHOL-RXN
REACTION-LIST - 3.1.4.11-RXN
SYNONYMS - phospholipase pathway
//
UNIQUE-ID - LIPAS-PWY
TYPES - Fatty-Acid-and-Lipid-Degradation
COMMON-NAME - triacylglycerol degradation
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |Iourovitski|
PREDECESSORS - (RXN-1602 TRIACYLGLYCEROL-LIPASE-RXN)
PREDECESSORS - (RXN-1603 RXN-1602)
PREDECESSORS - (3.1.1.23-RXN RXN-1603)
PRIMARIES - (3.1.1.23-RXN (CPD-504) (GLYCEROL))
PRIMARIES - (RXN-1602 (|Diacylglycerides|) (CPD-409))
REACTION-LAYOUT - (RXN-1603 (:LEFT-PRIMARIES CPD-409) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-504))
REACTION-LAYOUT - (RXN-1602 (:LEFT-PRIMARIES |Diacylglycerides|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-409))
REACTION-LAYOUT - (3.1.1.23-RXN (:LEFT-PRIMARIES CPD-504) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLYCEROL))
REACTION-LAYOUT - (TRIACYLGLYCEROL-LIPASE-RXN (:LEFT-PRIMARIES |Triacylglycerols|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Diacylglycerides|))
REACTION-LIST - RXN-1603
REACTION-LIST - RXN-1602
REACTION-LIST - 3.1.1.23-RXN
REACTION-LIST - TRIACYLGLYCEROL-LIPASE-RXN
SYNONYMS - triacylglyceride degradation
SYNONYMS - triacylglycerol hydrolysis
SYNONYMS - lipolysis
//
UNIQUE-ID - PWY-5136
TYPES - Fatty-Acid-Degradation
COMMON-NAME - fatty acid β-oxidation II (core pathway)
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |zhang|
PATHWAY-LINKS - (TRANS-D2-ENOYL-COA PWY-5137)
PATHWAY-LINKS - (L-3-HYDROXYACYL-COA PWY-5138)
POLYMERIZATION-LINKS - (ACYL-COA KETOACYLCOATHIOL-RXN ACYL-COA-OXIDASE-RXN)
PREDECESSORS - (ENOYL-COA-HYDRAT-RXN ACYL-COA-OXIDASE-RXN)
PREDECESSORS - (OHACYL-COA-DEHYDROG-RXN ENOYL-COA-HYDRAT-RXN)
PREDECESSORS - (ACYL-COA-OXIDASE-RXN ACYLCOASYN-RXN)
PREDECESSORS - (KETOACYLCOATHIOL-RXN OHACYL-COA-DEHYDROG-RXN)
PRIMARIES - (OHACYL-COA-DEHYDROG-RXN (L-3-HYDROXYACYL-COA) (3-KETOACYL-COA))
PRIMARIES - (KETOACYLCOATHIOL-RXN (3-KETOACYL-COA) (ACYL-COA))
PRIMARIES - (ENOYL-COA-HYDRAT-RXN (TRANS-D2-ENOYL-COA) (L-3-HYDROXYACYL-COA))
PRIMARIES - (ACYLCOASYN-RXN (|Fatty-Acids|) (ACYL-COA))
PRIMARIES - (ACYL-COA-OXIDASE-RXN (ACYL-COA) (TRANS-D2-ENOYL-COA))
PRIMARIES - (CATAL-RXN NIL NIL)
REACTION-LAYOUT - (KETOACYLCOATHIOL-RXN (:LEFT-PRIMARIES ACETYL-COA |Saturated-Fatty-Acyl-CoA|) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 3-KETOACYL-COA))
REACTION-LAYOUT - (OHACYL-COA-DEHYDROG-RXN (:LEFT-PRIMARIES L-3-HYDROXYACYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-KETOACYL-COA))
REACTION-LAYOUT - (ENOYL-COA-HYDRAT-RXN (:LEFT-PRIMARIES L-3-HYDROXYACYL-COA) (:DIRECTION :R2L) (:RIGHT-PRIMARIES TRANS-D2-ENOYL-COA))
REACTION-LAYOUT - (ACYL-COA-OXIDASE-RXN (:LEFT-PRIMARIES ACYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TRANS-D2-ENOYL-COA))
REACTION-LAYOUT - (ACYLCOASYN-RXN (:LEFT-PRIMARIES |Fatty-Acids|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Saturated-Fatty-Acyl-CoA|))
REACTION-LIST - KETOACYLCOATHIOL-RXN
REACTION-LIST - OHACYL-COA-DEHYDROG-RXN
REACTION-LIST - ENOYL-COA-HYDRAT-RXN
REACTION-LIST - ACYL-COA-OXIDASE-RXN
REACTION-LIST - ACYLCOASYN-RXN
SYNONYMS - fatty acid degradation
//
UNIQUE-ID - PWY-5137
TYPES - Fatty-Acid-Degradation
COMMON-NAME - fatty acid β-oxidation III (unsaturated, odd number)
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |zhang|
PATHWAY-LINKS - (TRANS-D2-ENOYL-COA PWY-5136)
PREDECESSORS - (ENOYL-COA-DELTA-ISOM-RXN)
PRIMARIES - (OHACYL-COA-DEHYDROG-RXN (L-3-HYDROXYACYL-COA) (3-KETOACYL-COA))
PRIMARIES - (KETOACYLCOATHIOL-RXN (3-KETOACYL-COA) (ACYL-COA))
PRIMARIES - (ENOYL-COA-HYDRAT-RXN (TRANS-D2-ENOYL-COA) (L-3-HYDROXYACYL-COA))
PRIMARIES - (ENOYL-COA-DELTA-ISOM-RXN (CIS-DELTA3-ENOYL-COA) (TRANS-D2-ENOYL-COA))
REACTION-LAYOUT - (ENOYL-COA-DELTA-ISOM-RXN (:LEFT-PRIMARIES CIS-DELTA3-ENOYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TRANS-D2-ENOYL-COA))
REACTION-LIST - ENOYL-COA-DELTA-ISOM-RXN
//
UNIQUE-ID - PWY-5138
TYPES - Fatty-Acid-Degradation
COMMON-NAME - fatty acid β-oxidation IV (unsaturated, even number)
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - SRI
CREDITS - |caspi|
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |zhang|
PATHWAY-LINKS - (L-3-HYDROXYACYL-COA PWY-5136)
PATHWAY-LINKS - (ACYL-COA PWY-5136)
PREDECESSORS - (ENOYL-COA-HYDRAT-RXN RXN-7699)
PREDECESSORS - (RXN-7699 RXN-7838)
PREDECESSORS - (OHBUTYRYL-COA-EPIM-RXN RXN-7838)
PREDECESSORS - (ENOYL-COA-HYDRAT-RXN RXN-7836)
PREDECESSORS - (RXN-7836 RXN-7835)
PRIMARIES - (KETOACYLCOATHIOL-RXN (3-KETOACYL-COA) (ACYL-COA))
PRIMARIES - (OHACYL-COA-DEHYDROG-RXN (L-3-HYDROXYACYL-COA) (3-KETOACYL-COA))
PRIMARIES - (RXN-7838 (|Cis-2-enoyl-CoAs|) (D-3-HYDROXYACYL-COA))
PRIMARIES - (RXN-7699 (D-3-HYDROXYACYL-COA) (TRANS-D2-ENOYL-COA))
PRIMARIES - (RXN-7835 (|2-trans-4-cis-dienoyl-CoAs|) (|Trans-3-enoyl-CoAs|))
REACTION-LAYOUT - (RXN-7699 (:LEFT-PRIMARIES D-3-HYDROXYACYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TRANS-D2-ENOYL-COA))
REACTION-LAYOUT - (RXN-7835 (:LEFT-PRIMARIES |2-trans-4-cis-dienoyl-CoAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Trans-3-enoyl-CoAs|))
REACTION-LAYOUT - (ENOYL-COA-HYDRAT-RXN (:LEFT-PRIMARIES L-3-HYDROXYACYL-COA) (:DIRECTION :R2L) (:RIGHT-PRIMARIES TRANS-D2-ENOYL-COA))
REACTION-LAYOUT - (OHBUTYRYL-COA-EPIM-RXN (:LEFT-PRIMARIES D-3-HYDROXYACYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-3-HYDROXYACYL-COA))
REACTION-LAYOUT - (RXN-7838 (:LEFT-PRIMARIES |Cis-2-enoyl-CoAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES D-3-HYDROXYACYL-COA))
REACTION-LAYOUT - (RXN-7836 (:LEFT-PRIMARIES |Trans-3-enoyl-CoAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TRANS-D2-ENOYL-COA))
REACTION-LIST - RXN-7699
REACTION-LIST - RXN-7835
REACTION-LIST - ENOYL-COA-HYDRAT-RXN
REACTION-LIST - OHBUTYRYL-COA-EPIM-RXN
REACTION-LIST - RXN-7838
REACTION-LIST - RXN-7836
//
UNIQUE-ID - 2PHENDEG-PWY
TYPES - Phenylethylamine-Degradation
TYPES - AMINE-DEG
COMMON-NAME - phenylethylamine degradation
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - O-18
CREDITS - |pellegrini-toole|
PREDECESSORS - (PHENDEHYD-RXN AMINEPHEN-RXN)
REACTION-LAYOUT - (PHENDEHYD-RXN (:LEFT-PRIMARIES PHENYLACETALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHENYLACETATE))
REACTION-LAYOUT - (AMINEPHEN-RXN (:LEFT-PRIMARIES PHENYLETHYLAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHENYLACETALDEHYDE))
REACTION-LIST - PHENDEHYD-RXN
REACTION-LIST - AMINEPHEN-RXN
//
UNIQUE-ID - PWY-5704
TYPES - Urea-Degradation
COMMON-NAME - urea degradation II
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |caspi|
PREDECESSORS - (UREASE-RXN)
PRIMARIES - (UREASE-RXN NIL (AMMONIA))
PRIMARIES - (ALLOPHANATE-HYDROLASE-RXN NIL (AMMONIA))
PRIMARIES - (ALLANTOICASE-RXN NIL (UREA CPD-1091))
PRIMARIES - (UREIDOGLYCOLATE-LYASE-RXN (CPD-1091) NIL)
REACTION-LAYOUT - (UREASE-RXN (:LEFT-PRIMARIES UREA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AMMONIA))
REACTION-LIST - UREASE-RXN
//
UNIQUE-ID - PWY-5698
TYPES - Allantoin-degradation
COMMON-NAME - allantoin degradation to ureidoglycolate II (ammonia producing)
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - |caspi|
CREDITS - SRI
CREDITS - |keseler|
IN-PATHWAY - PWY0-41
PREDECESSORS - (ALLANTOINASE-RXN RXN0-5473)
PREDECESSORS - (URUR-RXN ALLANTOATE-DEIMINASE-RXN)
PREDECESSORS - (ALLANTOATE-DEIMINASE-RXN ALLANTOINASE-RXN)
PRIMARIES - (UREIDOGLYCOLATE-LYASE-RXN (CPD-1091) (GLYOX))
REACTION-LAYOUT - (RXN0-5473 (:LEFT-PRIMARIES URATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES S-ALLANTOIN))
REACTION-LAYOUT - (URUR-RXN (:LEFT-PRIMARIES CPD-598) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-1091))
REACTION-LAYOUT - (ALLANTOATE-DEIMINASE-RXN (:LEFT-PRIMARIES ALLANTOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-598))
REACTION-LAYOUT - (ALLANTOINASE-RXN (:LEFT-PRIMARIES S-ALLANTOIN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALLANTOATE))
REACTION-LIST - RXN0-5473
REACTION-LIST - URUR-RXN
REACTION-LIST - ALLANTOATE-DEIMINASE-RXN
REACTION-LIST - ALLANTOINASE-RXN
SUPER-PATHWAYS - PWY0-41
//
UNIQUE-ID - PWY0-1313
TYPES - CARBOXYLATES-DEG
COMMON-NAME - acetate conversion to acetyl-CoA
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |caspi|
PREDECESSORS - (ACETATE--COA-LIGASE-RXN)
PRIMARIES - (ACETATE--COA-LIGASE-RXN (ACET) (ACETYL-COA))
REACTION-LAYOUT - (ACETATE--COA-LIGASE-RXN (:LEFT-PRIMARIES ACET) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ACETYL-COA))
REACTION-LIST - ACETATE--COA-LIGASE-RXN
//
UNIQUE-ID - PWY-5074
TYPES - CARBOXYLATES-DEG
COMMON-NAME - mevalonate degradation
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (MEVALONATE PWY-922)
PREDECESSORS - (HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN HYDROXYMETHYLGLUTARYL-COA-REDUCTASE-RXN)
PRIMARIES - (HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN NIL (3-KETOBUTYRATE))
PRIMARIES - (HYDROXYMETHYLGLUTARYL-COA-REDUCTASE-RXN (MEVALONATE) NIL)
REACTION-LAYOUT - (HYDROXYMETHYLGLUTARYL-COA-REDUCTASE-RXN (:LEFT-PRIMARIES MEVALONATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-HYDROXY-3-METHYL-GLUTARYL-COA))
REACTION-LAYOUT - (HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN (:LEFT-PRIMARIES 3-HYDROXY-3-METHYL-GLUTARYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-KETOBUTYRATE))
REACTION-LIST - HYDROXYMETHYLGLUTARYL-COA-REDUCTASE-RXN
REACTION-LIST - HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN
//
UNIQUE-ID - PWY-5535
TYPES - Acetate-Formation
COMMON-NAME - acetate formation from acetyl-CoA II
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - SRI
CREDITS - |caspi|
PREDECESSORS - (ACETATE--COA-LIGASE-ADP-FORMING-RXN)
PRIMARIES - (ACETATE--COA-LIGASE-ADP-FORMING-RXN (ACETYL-COA) (ACET))
PRIMARIES - (ALANINE-AMINOTRANSFERASE-RXN (PYRUVATE) (L-ALPHA-ALANINE))
PRIMARIES - (PYRUFLAVREDUCT-RXN (PYRUVATE) (ACETYL-COA))
PRIMARIES - (F16ALDOLASE-RXN NIL (DIHYDROXY-ACETONE-PHOSPHATE GAP))
PRIMARIES - (TRIOSEPISOMERIZATION-RXN (GAP) (DIHYDROXY-ACETONE-PHOSPHATE))
REACTION-LAYOUT - (ACETATE--COA-LIGASE-ADP-FORMING-RXN (:LEFT-PRIMARIES ACET) (:DIRECTION :R2L) (:RIGHT-PRIMARIES ACETYL-COA))
REACTION-LIST - ACETATE--COA-LIGASE-ADP-FORMING-RXN
//
UNIQUE-ID - GLYCEROLMETAB-PWY
TYPES - GLYCEROL-DEG
COMMON-NAME - glycerol degradation V
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - O-18
CREDITS - |riley|
PREDECESSORS - (GLYCDEH-RXN)
REACTION-LAYOUT - (GLYCDEH-RXN (:LEFT-PRIMARIES GLYCEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROXYACETONE))
REACTION-LIST - GLYCDEH-RXN
//
UNIQUE-ID - PWY66-21
TYPES - Ethanol-Degradation
COMMON-NAME - oxidative ethanol degradation I
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |wagg|
PREDECESSORS - (ACETATE--COA-LIGASE-RXN RXN66-3)
PREDECESSORS - (RXN66-3 ALCOHOL-DEHYDROG-RXN)
PRIMARIES - (ACETATE--COA-LIGASE-ADP-FORMING-RXN (ACET) (ACETYL-COA))
PRIMARIES - (ACETATE--COA-LIGASE-RXN (ACET) (ACETYL-COA))
PRIMARIES - (ACETYL-COA-HYDROLASE-RXN (ACET) (ACETYL-COA))
REACTION-LAYOUT - (ACETATE--COA-LIGASE-RXN (:LEFT-PRIMARIES ACET) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ACETYL-COA))
REACTION-LAYOUT - (RXN66-3 (:LEFT-PRIMARIES ACETALD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ACET))
REACTION-LAYOUT - (ALCOHOL-DEHYDROG-RXN (:LEFT-PRIMARIES ACETALD) (:DIRECTION :R2L) (:RIGHT-PRIMARIES ETOH))
REACTION-LIST - ACETATE--COA-LIGASE-RXN
REACTION-LIST - RXN66-3
REACTION-LIST - ALCOHOL-DEHYDROG-RXN
//
UNIQUE-ID - PWY-5874
TYPES - Heme-Degradation
COMMON-NAME - heme degradation
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (BILIRUBIN "excretion in the bile")
PREDECESSORS - (BILIVERDIN-REDUCTASE-RXN HEME-OXYGENASE-DECYCLIZING-RXN)
REACTION-LAYOUT - (BILIVERDIN-REDUCTASE-RXN (:LEFT-PRIMARIES BILIRUBIN) (:DIRECTION :R2L) (:RIGHT-PRIMARIES BILIVERDINE))
REACTION-LAYOUT - (HEME-OXYGENASE-DECYCLIZING-RXN (:LEFT-PRIMARIES PROTOHEME) (:DIRECTION :L2R) (:RIGHT-PRIMARIES BILIVERDINE))
REACTION-LIST - BILIVERDIN-REDUCTASE-RXN
REACTION-LIST - HEME-OXYGENASE-DECYCLIZING-RXN
//
UNIQUE-ID - PWY-5098
TYPES - Chlorophyll-A-Degradation
COMMON-NAME - chlorophyll a degradation
CITATIONS - :EV-COMP-AINF:3497824356:liya
PREDECESSORS - (3.1.1.82-RXN RXN-7739)
PREDECESSORS - (RXN-7738)
PREDECESSORS - (RXN-7739 RXN-7738)
PREDECESSORS - (RXN-7740 RXN-7739)
PREDECESSORS - (RXN-7741 RXN-7740)
PRIMARIES - (3.1.1.82-RXN NIL (CPD-10296))
PRIMARIES - (RXN-7738 (CHLOROPHYLL-A) (PHYTOL CHLOROPHYLLIDE-A))
PRIMARIES - (RXN-7741 (CPD-7063) (CPD-7064))
PRIMARIES - (RXN-7740 (CPD-7061) (CPD-7063))
PRIMARIES - (RXN-7739 (CHLOROPHYLLIDE-A) (CPD-7061))
REACTION-LAYOUT - (3.1.1.82-RXN (:LEFT-PRIMARIES CPD-7061) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-10296))
REACTION-LAYOUT - (RXN-7740 (:LEFT-PRIMARIES CPD-7061) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7063))
REACTION-LAYOUT - (RXN-7739 (:LEFT-PRIMARIES CHLOROPHYLLIDE-A) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7061))
REACTION-LAYOUT - (RXN-7741 (:LEFT-PRIMARIES CPD-7064) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CPD-7063))
REACTION-LAYOUT - (RXN-7738 (:LEFT-PRIMARIES CHLOROPHYLL-A) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHYTOL CHLOROPHYLLIDE-A))
REACTION-LIST - 3.1.1.82-RXN
REACTION-LIST - RXN-7740
REACTION-LIST - RXN-7739
REACTION-LIST - RXN-7741
REACTION-LIST - RXN-7738
//
UNIQUE-ID - PWY-5988
TYPES - Protein-Degradation
COMMON-NAME - wound-induced proteolysis I
CITATIONS - :EV-COMP-AINF:3497824359:liya
CREDITS - O-27
CREDITS - |pujar|
PRIMARIES - (3.4.11.1-RXN (|Peptides|) (|Amino-Acids-20|))
REACTION-LAYOUT - (3.4.11.1-RXN (:LEFT-PRIMARIES |Peptides|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Peptides| |Amino-Acids-20|))
REACTION-LIST - 3.4.11.1-RXN
//
UNIQUE-ID - PWY-6018
TYPES - Protein-Degradation
COMMON-NAME - seed germination protein turnover
CITATIONS - :EV-COMP-AINF:3497824359:liya
CREDITS - O-27
CREDITS - |pujar|
POLYMERIZATION-LINKS - (|Peptides| 3.4.11.1-RXN 3.4.11.1-RXN)
PREDECESSORS - (3.4.11.1-RXN)
PRIMARIES - (3.4.11.1-RXN (WATER |Peptides|) (|Peptides|))
REACTION-LAYOUT - (3.4.11.1-RXN (:LEFT-PRIMARIES WATER |Peptides|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Peptides|))
REACTION-LIST - 3.4.11.1-RXN
//
UNIQUE-ID - P401-PWY
TYPES - Other-Degradation
COMMON-NAME - cyanide degradation
CITATIONS - :EV-COMP-AINF:3497824356:liya
PREDECESSORS - (L-3-CYANOALANINE-SYNTHASE-RXN)
PRIMARIES - (L-3-CYANOALANINE-SYNTHASE-RXN (HCN) NIL)
REACTION-LAYOUT - (L-3-CYANOALANINE-SYNTHASE-RXN (:LEFT-PRIMARIES HCN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-603))
REACTION-LIST - L-3-CYANOALANINE-SYNTHASE-RXN
//
UNIQUE-ID - PWY-862
TYPES - CARBO-BIOSYNTHESIS
TYPES - POLYSACCHARIDES-DEG
COMMON-NAME - fructan degradation
CITATIONS - :EV-COMP-AINF:3497824358:liya
REACTION-LAYOUT - (RXN-1863 (:LEFT-PRIMARIES CPD-2281) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 6G-KESTOTETRAOSE FRU))
REACTION-LAYOUT - (RXN-1841 (:LEFT-PRIMARIES 1-KESTOTRIOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SUCROSE FRU))
REACTION-LIST - RXN-1863
REACTION-LIST - RXN-1841
SYNONYMS - fructan mobilization
//
UNIQUE-ID - PWY-842
TYPES - CARBO-BIOSYNTHESIS
TYPES - Starch-Degradation
COMMON-NAME - starch degradation
CITATIONS - :EV-COMP-AINF:3497824358:liya
PATHWAY-LINKS - (GLC-6-P PENTOSE-P-PWY GLYCOLYSIS)
PREDECESSORS - (RXN-1685 RXN-1828)
PREDECESSORS - (RXN-1824 RXN-1823)
PREDECESSORS - (RXN-1825 RXN-1824)
PREDECESSORS - (RXN-1826 RXN-1824)
PREDECESSORS - (RXN-1828 RXN-1825)
PREDECESSORS - (RXN-2141 RXN-1827)
PREDECESSORS - (RXN-1685 RXN-2141)
PREDECESSORS - (PHOSPHOGLUCMUT-RXN RXN-1826)
PREDECESSORS - (GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN RXN-1685)
PREDECESSORS - (GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN PHOSPHOGLUCMUT-RXN)
PRIMARIES - (RXN-2141 (ALPHA-MALTOSE) (ALPHA-GLUCOSE))
PRIMARIES - (RXN-1827 (|1-4-alpha-D-Glucan|) (ALPHA-MALTOSE))
PRIMARIES - (GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN (ALPHA-GLC-6-P) (GLC-6-P))
PRIMARIES - (PHOSPHOGLUCMUT-RXN (GLC-1-P) (ALPHA-GLC-6-P))
PRIMARIES - (RXN-1685 (ALPHA-GLUCOSE) (ALPHA-GLC-6-P))
REACTION-LAYOUT - (GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN (:LEFT-PRIMARIES ALPHA-GLC-6-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLC-6-P))
REACTION-LAYOUT - (PHOSPHOGLUCMUT-RXN (:LEFT-PRIMARIES GLC-1-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALPHA-GLC-6-P))
REACTION-LAYOUT - (RXN-1685 (:LEFT-PRIMARIES ALPHA-GLUCOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALPHA-GLC-6-P))
REACTION-LAYOUT - (RXN-2141 (:LEFT-PRIMARIES ALPHA-MALTOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALPHA-GLUCOSE))
REACTION-LAYOUT - (RXN-1828 (:LEFT-PRIMARIES ALPHA-GLUCOSE |Long-linear-glucans|) (:DIRECTION :R2L) (:RIGHT-PRIMARIES |Short-glucans| |Short-glucans|))
REACTION-LAYOUT - (RXN-1827 (:LEFT-PRIMARIES |1-4-alpha-D-Glucan|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALPHA-MALTOSE |1-4-alpha-D-Glucan|))
REACTION-LAYOUT - (RXN-1826 (:LEFT-PRIMARIES |Long-linear-glucans|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLC-1-P))
REACTION-LAYOUT - (RXN-1825 (:LEFT-PRIMARIES |Long-linear-glucans|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Short-glucans|))
REACTION-LAYOUT - (RXN-1824 (:LEFT-PRIMARIES |Large-branched-glucans|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Long-linear-glucans|))
REACTION-LAYOUT - (RXN-1823 (:LEFT-PRIMARIES |Starch|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Large-branched-glucans|))
REACTION-LIST - GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN
REACTION-LIST - PHOSPHOGLUCMUT-RXN
REACTION-LIST - RXN-1685
REACTION-LIST - RXN-2141
REACTION-LIST - RXN-1828
REACTION-LIST - RXN-1827
REACTION-LIST - RXN-1826
REACTION-LIST - RXN-1825
REACTION-LIST - RXN-1824
REACTION-LIST - RXN-1823
SYNONYMS - starch mobilization
//
UNIQUE-ID - PWY-4021
TYPES - Betaine-Biosynthesis
TYPES - Amino-Acid-Degradation
COMMON-NAME - β-alanine betaine biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
PREDECESSORS - (RXN-6464 RXN-6462)
PREDECESSORS - (RXN-6462 RXN-6461)
PREDECESSORS - (RXN-6461)
PRIMARIES - (RXN-6464 (CPD-6142) (CPD-6181))
PRIMARIES - (RXN-6462 (CPD-6141) (CPD-6142))
PRIMARIES - (RXN-6461 (B-ALANINE) (CPD-6141))
REACTION-LAYOUT - (RXN-6461 (:LEFT-PRIMARIES B-ALANINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6141))
REACTION-LAYOUT - (RXN-6462 (:LEFT-PRIMARIES CPD-6141) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6142))
REACTION-LAYOUT - (RXN-6464 (:LEFT-PRIMARIES CPD-6142) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6181))
REACTION-LIST - RXN-6461
REACTION-LIST - RXN-6462
REACTION-LIST - RXN-6464
//
UNIQUE-ID - ALANINE-DEG3-PWY
TYPES - ALANINE-DEG
COMMON-NAME - alanine degradation III
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |fulcher|
PATHWAY-LINKS - (PYRUVATE PYRUVDEHYD-PWY)
PREDECESSORS - (ALANINE-AMINOTRANSFERASE-RXN)
PRIMARIES - (ALANINE-AMINOTRANSFERASE-RXN (L-ALPHA-ALANINE) (PYRUVATE))
PRIMARIES - (D-ALANINE-AMINOTRANSFERASE-RXN (D-ALANINE) (PYRUVATE))
REACTION-LAYOUT - (ALANINE-AMINOTRANSFERASE-RXN (:LEFT-PRIMARIES L-ALPHA-ALANINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PYRUVATE))
REACTION-LIST - ALANINE-AMINOTRANSFERASE-RXN
//
UNIQUE-ID - PWY0-823
TYPES - ARGININE-DEG
TYPES - Polyamine-Biosynthesis
COMMON-NAME - arginine degradation III (arginine decarboxylase/agmatinase pathway)
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - |caspi|
CREDITS - SRI
CREDITS - |arnaud|
PREDECESSORS - (AGMATIN-RXN ARGDECARBOX-RXN)
PRIMARIES - (AGMATIN-RXN NIL (PUTRESCINE))
REACTION-LAYOUT - (AGMATIN-RXN (:LEFT-PRIMARIES AGMATHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PUTRESCINE))
REACTION-LAYOUT - (ARGDECARBOX-RXN (:LEFT-PRIMARIES ARG) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AGMATHINE))
REACTION-LIST - AGMATIN-RXN
REACTION-LIST - ARGDECARBOX-RXN
//
UNIQUE-ID - ARG-PRO-PWY
TYPES - PROLINE-SYN
TYPES - ARGININE-DEG
COMMON-NAME - arginine degradation VI (arginase 2 pathway)
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - |caspi|
CREDITS - SRI
CREDITS - |hying|
PATHWAY-LINKS - (PRO PROUT-PWY)
PREDECESSORS - (ORNITHINE-GLU-AMINOTRANSFORASE-RXN ARGINASE-RXN)
PREDECESSORS - (SPONTPRO-RXN ORNITHINE-GLU-AMINOTRANSFORASE-RXN)
PREDECESSORS - (PYRROLINECARBREDUCT-RXN SPONTPRO-RXN)
REACTION-LAYOUT - (SPONTPRO-RXN (:LEFT-PRIMARIES L-GLUTAMATE_GAMMA-SEMIALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-DELTA1-PYRROLINE_5-CARBOXYLATE))
REACTION-LAYOUT - (ARGINASE-RXN (:LEFT-PRIMARIES ARG) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-ORNITHINE))
REACTION-LAYOUT - (ORNITHINE-GLU-AMINOTRANSFORASE-RXN (:LEFT-PRIMARIES L-ORNITHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-GLUTAMATE_GAMMA-SEMIALDEHYDE))
REACTION-LAYOUT - (PYRROLINECARBREDUCT-RXN (:LEFT-PRIMARIES PRO) (:DIRECTION :R2L) (:RIGHT-PRIMARIES L-DELTA1-PYRROLINE_5-CARBOXYLATE))
REACTION-LIST - SPONTPRO-RXN
REACTION-LIST - ARGINASE-RXN
REACTION-LIST - ORNITHINE-GLU-AMINOTRANSFORASE-RXN
REACTION-LIST - PYRROLINECARBREDUCT-RXN
SYNONYMS - proline biosynthesis from arginine
//
UNIQUE-ID - ARGDEG-V-PWY
TYPES - ARGININE-DEG
COMMON-NAME - arginine degradation X (arginine monooxygenase pathway)
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - |caspi|
CREDITS - SRI
CREDITS - |hying|
PREDECESSORS - (GUANIDINOBUTANAMIDE-NH3-RXN ARGININE-2-MONOOXYGENASE-RXN)
PREDECESSORS - (GUANIDINOBUTYRASE-RXN GUANIDINOBUTANAMIDE-NH3-RXN)
PRIMARIES - (GUANIDINOBUTYRASE-RXN NIL (4-AMINO-BUTYRATE))
REACTION-LAYOUT - (ARGININE-2-MONOOXYGENASE-RXN (:LEFT-PRIMARIES ARG) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 4-GUANIDO-BUTYRAMIDE))
REACTION-LAYOUT - (GUANIDINOBUTYRASE-RXN (:LEFT-PRIMARIES CPD-592) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 4-AMINO-BUTYRATE))
REACTION-LAYOUT - (GUANIDINOBUTANAMIDE-NH3-RXN (:LEFT-PRIMARIES 4-GUANIDO-BUTYRAMIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-592))
REACTION-LIST - ARGININE-2-MONOOXYGENASE-RXN
REACTION-LIST - GUANIDINOBUTYRASE-RXN
REACTION-LIST - GUANIDINOBUTANAMIDE-NH3-RXN
//
UNIQUE-ID - ARGASEDEG-PWY
TYPES - GLUTAMATE-SYN
TYPES - ARGININE-DEG
COMMON-NAME - arginine degradation I (arginase pathway)
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - |caspi|
CREDITS - SRI
CREDITS - |hying|
PREDECESSORS - (PYRROLINECARBDEHYDROG-RXN SPONTPRO-RXN)
PREDECESSORS - (ORNITHINE-GLU-AMINOTRANSFORASE-RXN ARGINASE-RXN)
PREDECESSORS - (SPONTPRO-RXN ORNITHINE-GLU-AMINOTRANSFORASE-RXN)
PRIMARIES - (ARGINASE-RXN (ARG) (L-ORNITHINE))
REACTION-LAYOUT - (ORNITHINE-GLU-AMINOTRANSFORASE-RXN (:LEFT-PRIMARIES L-ORNITHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-GLUTAMATE_GAMMA-SEMIALDEHYDE GLT))
REACTION-LAYOUT - (SPONTPRO-RXN (:LEFT-PRIMARIES L-GLUTAMATE_GAMMA-SEMIALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-DELTA1-PYRROLINE_5-CARBOXYLATE))
REACTION-LAYOUT - (PYRROLINECARBDEHYDROG-RXN (:LEFT-PRIMARIES L-DELTA1-PYRROLINE_5-CARBOXYLATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLT))
REACTION-LAYOUT - (ARGINASE-RXN (:LEFT-PRIMARIES ARG) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-ORNITHINE))
REACTION-LIST - ORNITHINE-GLU-AMINOTRANSFORASE-RXN
REACTION-LIST - SPONTPRO-RXN
REACTION-LIST - PYRROLINECARBDEHYDROG-RXN
REACTION-LIST - ARGINASE-RXN
SYNONYMS - arginase degradative pathway
SYNONYMS - glutamate biosynthesis
//
UNIQUE-ID - LEU-DEG2-PWY
TYPES - LEUCINE-DEG
COMMON-NAME - leucine degradation I
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - |caspi|
CREDITS - SRI
CREDITS - |wagg|
PATHWAY-LINKS - (3-HYDROXY-3-METHYL-GLUTARYL-COA (PWY-922 . :OUTGOING))
PREDECESSORS - (HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN METHYLGLUTACONYL-COA-HYDRATASE-RXN)
PREDECESSORS - (METHYLGLUTACONYL-COA-HYDRATASE-RXN METHYLCROTONYL-COA-CARBOXYLASE-RXN)
PREDECESSORS - (METHYLCROTONYL-COA-CARBOXYLASE-RXN ISOVALERYL-COA-FAD-RXN)
PREDECESSORS - (2KETO-4METHYL-PENTANOATE-DEHYDROG-RXN BRANCHED-CHAINAMINOTRANSFERLEU-RXN)
PREDECESSORS - (ISOVALERYL-COA-FAD-RXN 2KETO-4METHYL-PENTANOATE-DEHYDROG-RXN)
PRIMARIES - (HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN NIL (3-KETOBUTYRATE))
REACTION-LAYOUT - (HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN (:LEFT-PRIMARIES 3-HYDROXY-3-METHYL-GLUTARYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-KETOBUTYRATE))
REACTION-LAYOUT - (METHYLGLUTACONYL-COA-HYDRATASE-RXN (:LEFT-PRIMARIES 3-HYDROXY-3-METHYL-GLUTARYL-COA) (:DIRECTION :R2L) (:RIGHT-PRIMARIES TRANS-3-METHYL-GLUTACONYL-COA))
REACTION-LAYOUT - (METHYLCROTONYL-COA-CARBOXYLASE-RXN (:LEFT-PRIMARIES 3-METHYL-CROTONYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TRANS-3-METHYL-GLUTACONYL-COA))
REACTION-LAYOUT - (2KETO-4METHYL-PENTANOATE-DEHYDROG-RXN (:LEFT-PRIMARIES 2K-4CH3-PENTANOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ISOVALERYL-COA))
REACTION-LAYOUT - (ISOVALERYL-COA-FAD-RXN (:LEFT-PRIMARIES ISOVALERYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-METHYL-CROTONYL-COA))
REACTION-LAYOUT - (BRANCHED-CHAINAMINOTRANSFERLEU-RXN (:LEFT-PRIMARIES LEU) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2K-4CH3-PENTANOATE))
REACTION-LIST - HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN
REACTION-LIST - METHYLGLUTACONYL-COA-HYDRATASE-RXN
REACTION-LIST - METHYLCROTONYL-COA-CARBOXYLASE-RXN
REACTION-LIST - 2KETO-4METHYL-PENTANOATE-DEHYDROG-RXN
REACTION-LIST - ISOVALERYL-COA-FAD-RXN
REACTION-LIST - BRANCHED-CHAINAMINOTRANSFERLEU-RXN
//
UNIQUE-ID - ASPARAGINE-DEG1-PWY
TYPES - ASPARAGINE-DEG
COMMON-NAME - asparagine degradation I
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - SRI
CREDITS - |fulcher|
PREDECESSORS - (ASPARAGHYD-RXN)
REACTION-LAYOUT - (ASPARAGHYD-RXN (:LEFT-PRIMARIES ASN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-ASPARTATE))
REACTION-LIST - ASPARAGHYD-RXN
SYNONYMS - asparagine degradation 1
//
UNIQUE-ID - ILEUDEG-PWY
TYPES - ISOLEUCINE-DEG
COMMON-NAME - isoleucine degradation I
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - |caspi|
CREDITS - SRI
CREDITS - |hying|
PREDECESSORS - (TIGLYLCOA-HYDROXY-RXN 2-MEBUCOA-FAD-RXN)
PREDECESSORS - (1.1.1.178-RXN TIGLYLCOA-HYDROXY-RXN)
PREDECESSORS - (METHYLACETOACETYLCOATHIOL-RXN 1.1.1.178-RXN)
PREDECESSORS - (2KETO-3METHYLVALERATE-RXN BRANCHED-CHAINAMINOTRANSFERILEU-RXN)
PREDECESSORS - (2-MEBUCOA-FAD-RXN 2KETO-3METHYLVALERATE-RXN)
PRIMARIES - (METHYLACETOACETYLCOATHIOL-RXN (2-METHYL-ACETO-ACETYL-COA) (PROPIONYL-COA ACETYL-COA))
REACTION-LAYOUT - (2KETO-3METHYLVALERATE-RXN (:LEFT-PRIMARIES 2-KETO-3-METHYL-VALERATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-METHYL-BUTYRYL-COA))
REACTION-LAYOUT - (METHYLACETOACETYLCOATHIOL-RXN (:LEFT-PRIMARIES 2-METHYL-ACETO-ACETYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ACETYL-COA PROPIONYL-COA))
REACTION-LAYOUT - (TIGLYLCOA-HYDROXY-RXN (:LEFT-PRIMARIES TIGLYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-METHYL-3-HYDROXY-BUTYRYL-COA))
REACTION-LAYOUT - (1.1.1.178-RXN (:LEFT-PRIMARIES 2-METHYL-3-HYDROXY-BUTYRYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-METHYL-ACETO-ACETYL-COA))
REACTION-LAYOUT - (BRANCHED-CHAINAMINOTRANSFERILEU-RXN (:LEFT-PRIMARIES ILE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-KETO-3-METHYL-VALERATE))
REACTION-LAYOUT - (2-MEBUCOA-FAD-RXN (:LEFT-PRIMARIES 2-METHYL-BUTYRYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TIGLYL-COA))
REACTION-LIST - 2KETO-3METHYLVALERATE-RXN
REACTION-LIST - METHYLACETOACETYLCOATHIOL-RXN
REACTION-LIST - TIGLYLCOA-HYDROXY-RXN
REACTION-LIST - 1.1.1.178-RXN
REACTION-LIST - BRANCHED-CHAINAMINOTRANSFERILEU-RXN
REACTION-LIST - 2-MEBUCOA-FAD-RXN
//
UNIQUE-ID - GLYCLEAV-PWY
TYPES - GLYCINE-DEG
COMMON-NAME - glycine cleavage complex
CITATIONS - :EV-COMP-AINF:3497824359:liya
CREDITS - |fulcher|
CREDITS - SRI
CREDITS - |caspi|
CREDITS - O-18
CREDITS - |riley|
KEY-REACTIONS - GCVP-RXN
PREDECESSORS - (GCVT-RXN GCVP-RXN)
PREDECESSORS - (RXN-8629 GCVT-RXN)
PREDECESSORS - (GCVP-RXN RXN-8629)
PRIMARIES - (GCVMULTI-RXN (GLY) NIL)
PRIMARIES - (GLYOHMETRANS-RXN NIL (GLY))
REACTION-LAYOUT - (RXN-8629 (:LEFT-PRIMARIES DIHYDROLIPOYL-GCVH) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PROTEIN-LIPOYLLYSINE))
REACTION-LAYOUT - (GCVT-RXN (:LEFT-PRIMARIES AMINOMETHYLDIHYDROLIPOYL-GCVH) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROLIPOYL-GCVH))
REACTION-LAYOUT - (GCVP-RXN (:LEFT-PRIMARIES PROTEIN-LIPOYLLYSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AMINOMETHYLDIHYDROLIPOYL-GCVH))
REACTION-LIST - RXN-8629
REACTION-LIST - GCVT-RXN
REACTION-LIST - GCVP-RXN
SYNONYMS - glycine cleavage system
SYNONYMS - glycine decarboxylase complex
SYNONYMS - gcv system
//
UNIQUE-ID - LYSINE-DEG1-PWY
TYPES - LYSINE-DEG
COMMON-NAME - lysine degradation II
CITATIONS - :EV-COMP-AINF:3497824356:liya
PREDECESSORS - (2-KETO-ADIPATE-DEHYDROG-RXN 2-AMINOADIPATE-AMINOTRANSFERASE-RXN)
PREDECESSORS - (2-AMINOADIPATE-AMINOTRANSFERASE-RXN ALLYSINE-DEHYDROG-RXN)
PREDECESSORS - (ALLYSINE-DEHYDROG-RXN 1.5.1.9-RXN)
PREDECESSORS - (1.5.1.9-RXN 1.5.1.8-RXN)
PRIMARIES - (GLUTARYL-COA-DEHYDROG-RXN (GLUTARYL-COA) (GLUTACONYL-COA))
PRIMARIES - (2-AMINOADIPATE-AMINOTRANSFERASE-RXN (CPD-468) (2K-ADIPATE))
PRIMARIES - (1.5.1.9-RXN (SACCHAROPINE) (ALLYSINE))
PRIMARIES - (1.5.1.8-RXN (LYS) (SACCHAROPINE))
PRIMARIES - (GLUTACONYL-COA-DECARBOXYLASE-RXN (GLUTACONYL-COA) (CROTONYL-COA))
REACTION-LAYOUT - (2-KETO-ADIPATE-DEHYDROG-RXN (:LEFT-PRIMARIES 2K-ADIPATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CARBON-DIOXIDE))
REACTION-LAYOUT - (2-AMINOADIPATE-AMINOTRANSFERASE-RXN (:LEFT-PRIMARIES CPD-468) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2K-ADIPATE))
REACTION-LAYOUT - (ALLYSINE-DEHYDROG-RXN (:LEFT-PRIMARIES ALLYSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-468))
REACTION-LAYOUT - (1.5.1.9-RXN (:LEFT-PRIMARIES SACCHAROPINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALLYSINE))
REACTION-LAYOUT - (1.5.1.8-RXN (:LEFT-PRIMARIES SACCHAROPINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES LYS))
REACTION-LIST - 2-KETO-ADIPATE-DEHYDROG-RXN
REACTION-LIST - 2-AMINOADIPATE-AMINOTRANSFERASE-RXN
REACTION-LIST - ALLYSINE-DEHYDROG-RXN
REACTION-LIST - 1.5.1.9-RXN
REACTION-LIST - 1.5.1.8-RXN
SYNONYMS - lysine degradation I
//
UNIQUE-ID - MALATE-ASPARTATE-SHUTTLE-PWY
TYPES - ASPARTATE-DEG
COMMON-NAME - aspartate degradation II
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - SRI
CREDITS - |fulcher|
PREDECESSORS - (MALATE-DEH-RXN ASPAMINOTRANS-RXN)
REACTION-LAYOUT - (MALATE-DEH-RXN (:LEFT-PRIMARIES MAL) (:DIRECTION :R2L) (:RIGHT-PRIMARIES OXALACETIC_ACID))
REACTION-LAYOUT - (ASPAMINOTRANS-RXN (:LEFT-PRIMARIES L-ASPARTATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OXALACETIC_ACID))
REACTION-LIST - MALATE-DEH-RXN
REACTION-LIST - ASPAMINOTRANS-RXN
SYNONYMS - malate/aspartate shuttle pathway
//
UNIQUE-ID - PROUT-PWY
TYPES - PROLINE-DEG
COMMON-NAME - proline degradation I
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - |keseler|
CREDITS - |ingraham|
CREDITS - O0-3
CREDITS - SRI
CREDITS - |caspi|
CREDITS - O-18
CREDITS - |riley|
PREDECESSORS - (PYRROLINECARBDEHYDROG-RXN RXN-821)
REACTION-LAYOUT - (RXN-821 (:LEFT-PRIMARIES PRO) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-DELTA1-PYRROLINE_5-CARBOXYLATE))
REACTION-LAYOUT - (PYRROLINECARBDEHYDROG-RXN (:LEFT-PRIMARIES L-DELTA1-PYRROLINE_5-CARBOXYLATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLT))
REACTION-LIST - RXN-821
REACTION-LIST - PYRROLINECARBDEHYDROG-RXN
SYNONYMS - proline utilization
//
UNIQUE-ID - PWY-4561
TYPES - PROLINE-DEG
COMMON-NAME - proline degradation II
CITATIONS - :EV-COMP-AINF:3497824357:liya
PREDECESSORS - (RXN-7183 RXN-7181)
PRIMARIES - (RXN-7183 (L-DELTA1-PYRROLINE_5-CARBOXYLATE) (GLT))
PRIMARIES - (RXN-7181 (PRO) (L-DELTA1-PYRROLINE_5-CARBOXYLATE))
PRIMARIES - (PYRROLINECARBDEHYDROG-RXN (L-DELTA1-PYRROLINE_5-CARBOXYLATE) (GLT))
REACTION-LAYOUT - (RXN-7183 (:LEFT-PRIMARIES L-DELTA1-PYRROLINE_5-CARBOXYLATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLT))
REACTION-LAYOUT - (RXN-7181 (:LEFT-PRIMARIES PRO) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-DELTA1-PYRROLINE_5-CARBOXYLATE))
REACTION-LIST - RXN-7183
REACTION-LIST - RXN-7181
SYNONYMS - proline catabolism
//
UNIQUE-ID - VALDEG-PWY
TYPES - VALINE-DEG
COMMON-NAME - valine degradation I
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - |wagg|
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (2-KETO-ISOVALERATE (PANTO-PWY . :OUTGOING))
PREDECESSORS - (3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN METHYLACYLYLCOA-HYDROXY-RXN)
PREDECESSORS - (1.2.1.27-RXN 3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN)
PREDECESSORS - (3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN 3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN)
PREDECESSORS - (METHYLACYLYLCOA-HYDROXY-RXN MEPROPCOA-FAD-RXN)
PREDECESSORS - (1.2.1.25-RXN BRANCHED-CHAINAMINOTRANSFERVAL-RXN)
PREDECESSORS - (MEPROPCOA-FAD-RXN 1.2.1.25-RXN)
REACTION-LAYOUT - (1.2.1.25-RXN (:LEFT-PRIMARIES 2-KETO-ISOVALERATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ISOBUTYRYL-COA))
REACTION-LAYOUT - (1.2.1.27-RXN (:LEFT-PRIMARIES CH3-MALONATE-S-ALD CPD-12179) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HCO3))
REACTION-LAYOUT - (3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN (:LEFT-PRIMARIES 3-HYDROXY-ISOBUTYRATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CH3-MALONATE-S-ALD))
REACTION-LAYOUT - (3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN (:LEFT-PRIMARIES 3-HYDROXY-ISOBUTYRYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-HYDROXY-ISOBUTYRATE))
REACTION-LAYOUT - (METHYLACYLYLCOA-HYDROXY-RXN (:LEFT-PRIMARIES METHACRYLYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-HYDROXY-ISOBUTYRYL-COA))
REACTION-LAYOUT - (MEPROPCOA-FAD-RXN (:LEFT-PRIMARIES ISOBUTYRYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES METHACRYLYL-COA))
REACTION-LAYOUT - (BRANCHED-CHAINAMINOTRANSFERVAL-RXN (:LEFT-PRIMARIES VAL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-KETO-ISOVALERATE))
REACTION-LIST - 1.2.1.25-RXN
REACTION-LIST - 1.2.1.27-RXN
REACTION-LIST - 3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN
REACTION-LIST - 3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN
REACTION-LIST - METHYLACYLYLCOA-HYDROXY-RXN
REACTION-LIST - MEPROPCOA-FAD-RXN
REACTION-LIST - BRANCHED-CHAINAMINOTRANSFERVAL-RXN
//
UNIQUE-ID - GLUTAMINDEG-PWY
TYPES - GLUTAMINE-DEG
COMMON-NAME - glutamine degradation I
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - |fulcher|
CREDITS - SRI
CREDITS - |keseler|
PREDECESSORS - (GLUTAMIN-RXN)
REACTION-LAYOUT - (GLUTAMIN-RXN (:LEFT-PRIMARIES GLN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLT))
REACTION-LIST - GLUTAMIN-RXN
SYNONYMS - glutamine - glutamate pathway I
SYNONYMS - glutamine degradation IV
//
UNIQUE-ID - CITRULLINE-DEG-PWY
TYPES - MISCELLANEOUS-DEG
COMMON-NAME - citrulline degradation
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |hartmut|
CREDITS - |caspi|
CREDITS - SRI
CREDITS - |hying|
KEY-REACTIONS - ORNCARBAMTRANSFER-RXN
PREDECESSORS - (CARBAMATE-KINASE-RXN ORNCARBAMTRANSFER-RXN)
PRIMARIES - (ORNCARBAMTRANSFER-RXN (L-CITRULLINE) (CARBAMOYL-P))
PRIMARIES - (CARBAMATE-KINASE-RXN (CARBAMOYL-P) (CARBON-DIOXIDE))
REACTION-LAYOUT - (CARBAMATE-KINASE-RXN (:LEFT-PRIMARIES CARBON-DIOXIDE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CARBAMOYL-P))
REACTION-LAYOUT - (ORNCARBAMTRANSFER-RXN (:LEFT-PRIMARIES CARBAMOYL-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES L-CITRULLINE))
REACTION-LIST - CARBAMATE-KINASE-RXN
REACTION-LIST - ORNCARBAMTRANSFER-RXN
//
UNIQUE-ID - PWY-701
TYPES - METHIONINE-DEG
COMMON-NAME - methionine degradation II
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - O-18
CREDITS - |pellegrini-toole|
PREDECESSORS - (METHIONINE-GAMMA-LYASE-RXN)
REACTION-LAYOUT - (METHIONINE-GAMMA-LYASE-RXN (:LEFT-PRIMARIES MET) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-OXOBUTANOATE CPD-7671))
REACTION-LIST - METHIONINE-GAMMA-LYASE-RXN
SYNONYMS - methionine degradation 2
//
UNIQUE-ID - PWY-5766
TYPES - GLUTAMATE-DEG
COMMON-NAME - glutamate degradation X
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (GLT (GLUTAMINE-DEG . :INCOMING) (ARGININE-DEG . :INCOMING) (HISTIDINE-DEG . :INCOMING) (PROLINE-DEG . :INCOMING))
PREDECESSORS - (GLUTAMATE-DEHYDROGENASE-NADP+-RXN)
PRIMARIES - (GLUTAMATE-DEHYDROGENASE-RXN (GLT) (2-KETOGLUTARATE))
PRIMARIES - (GLUTAMATE-DEHYDROGENASE-NADP+-RXN (GLT) (2-KETOGLUTARATE))
REACTION-LAYOUT - (GLUTAMATE-DEHYDROGENASE-NADP+-RXN (:LEFT-PRIMARIES GLT) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-KETOGLUTARATE))
REACTION-LIST - GLUTAMATE-DEHYDROGENASE-NADP+-RXN
//
UNIQUE-ID - PWY-3982
TYPES - Uracil-Degradation
TYPES - Beta-Alanine-Biosynthesis
COMMON-NAME - β-alanine biosynthesis III
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - SRI
CREDITS - |caspi|
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |tissier|
PATHWAY-LINKS - (B-ALANINE PWY-3961)
PREDECESSORS - (BETA-UREIDOPROPIONASE-RXN DIHYDROPYRIMIDINASE-RXN)
PREDECESSORS - (DIHYDROPYRIMIDINASE-RXN 1.3.1.2-RXN)
PREDECESSORS - (1.3.1.2-RXN)
PRIMARIES - (BETA-UREIDOPROPIONASE-RXN (3-UREIDO-PROPIONATE) (B-ALANINE))
PRIMARIES - (DIHYDROPYRIMIDINASE-RXN (DI-H-URACIL) (3-UREIDO-PROPIONATE))
PRIMARIES - (1.3.1.2-RXN (URACIL) (DI-H-URACIL))
REACTION-LAYOUT - (BETA-UREIDOPROPIONASE-RXN (:LEFT-PRIMARIES 3-UREIDO-PROPIONATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES B-ALANINE))
REACTION-LAYOUT - (DIHYDROPYRIMIDINASE-RXN (:LEFT-PRIMARIES DI-H-URACIL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-UREIDO-PROPIONATE))
REACTION-LAYOUT - (1.3.1.2-RXN (:LEFT-PRIMARIES DI-H-URACIL) (:DIRECTION :R2L) (:RIGHT-PRIMARIES URACIL))
REACTION-LIST - BETA-UREIDOPROPIONASE-RXN
REACTION-LIST - DIHYDROPYRIMIDINASE-RXN
REACTION-LIST - 1.3.1.2-RXN
SYNONYMS - β-alanine biosynthesis from uracil
//
UNIQUE-ID - P164-PWY
TYPES - Purine-Degradation
COMMON-NAME - purine degradation III (anaerobic)
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |caspi|
CREDITS - O-18
CREDITS - |pellegrini-toole|
PREDECESSORS - (1.2.1.2-RXN FORMATETHFLIG-RXN)
PREDECESSORS - (ACETATEKIN-RXN RXN-7566)
PREDECESSORS - (RXN-7566 GLYCINE-FORMIMINOTRANSFERASE-RXN)
PREDECESSORS - (R127-RXN RXN0-901)
PREDECESSORS - (FORMATETHFLIG-RXN METHENYLTHFCYCLOHYDRO-RXN)
PREDECESSORS - (METHENYLTHFCYCLOHYDRO-RXN 4.3.1.4-RXN)
PREDECESSORS - (4.3.1.4-RXN GLYCINE-FORMIMINOTRANSFERASE-RXN)
PREDECESSORS - (GLYCINE-FORMIMINOTRANSFERASE-RXN R63-RXN)
PREDECESSORS - (R127-RXN GUANINE-DEAMINASE-RXN)
PREDECESSORS - (R128-RXN R127-RXN)
PREDECESSORS - (R62-RXN R128-RXN)
PREDECESSORS - (R13-RXN R62-RXN)
PREDECESSORS - (R63-RXN R13-RXN)
PREDECESSORS - (RXN0-901 RXN-8752)
PREDECESSORS - (R127-RXN RXN0-902)
PREDECESSORS - (RXN0-902 RXN-8755)
PRIMARIES - (1.2.1.2-RXN NIL (CARBON-DIOXIDE))
REACTION-LAYOUT - (ACETATEKIN-RXN (:LEFT-PRIMARIES ACET) (:DIRECTION :R2L) (:RIGHT-PRIMARIES ACETYL-P))
REACTION-LAYOUT - (RXN-7566 (:LEFT-PRIMARIES ACETYL-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GLY))
REACTION-LAYOUT - (RXN-8755 (:LEFT-PRIMARIES PURINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HYPOXANTHINE))
REACTION-LAYOUT - (RXN0-902 (:LEFT-PRIMARIES HYPOXANTHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHINE))
REACTION-LAYOUT - (RXN-8752 (:LEFT-PRIMARIES CPD-9016) (:DIRECTION :L2R) (:RIGHT-PRIMARIES URATE))
REACTION-LAYOUT - (RXN0-901 (:LEFT-PRIMARIES XANTHINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES URATE))
REACTION-LAYOUT - (1.2.1.2-RXN (:LEFT-PRIMARIES FORMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CARBON-DIOXIDE))
REACTION-LAYOUT - (FORMATETHFLIG-RXN (:LEFT-PRIMARIES FORMATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 10-FORMYL-THF))
REACTION-LAYOUT - (METHENYLTHFCYCLOHYDRO-RXN (:LEFT-PRIMARIES 5-10-METHENYL-THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 10-FORMYL-THF))
REACTION-LAYOUT - (4.3.1.4-RXN (:LEFT-PRIMARIES CPD-671) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-10-METHENYL-THF))
REACTION-LAYOUT - (GLYCINE-FORMIMINOTRANSFERASE-RXN (:LEFT-PRIMARIES CPD-671 GLY) (:DIRECTION :R2L) (:RIGHT-PRIMARIES N-FORMIMINO-GLYCINE))
REACTION-LAYOUT - (R63-RXN (:LEFT-PRIMARIES CPD-60) (:DIRECTION :L2R) (:RIGHT-PRIMARIES N-FORMIMINO-GLYCINE))
REACTION-LAYOUT - (R13-RXN (:LEFT-PRIMARIES CPD-54) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-60))
REACTION-LAYOUT - (R62-RXN (:LEFT-PRIMARIES 4-AMINO-5-IMIDAZOLE_CARBOXYLATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CARBON-DIOXIDE CPD-54))
REACTION-LAYOUT - (R128-RXN (:LEFT-PRIMARIES 5-UREIDO-4-IMIDAZOLE_CARBOXYLATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CARBON-DIOXIDE 4-AMINO-5-IMIDAZOLE_CARBOXYLATE))
REACTION-LAYOUT - (R127-RXN (:LEFT-PRIMARIES XANTHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-UREIDO-4-IMIDAZOLE_CARBOXYLATE))
REACTION-LAYOUT - (GUANINE-DEAMINASE-RXN (:LEFT-PRIMARIES GUANINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHINE))
REACTION-LIST - ACETATEKIN-RXN
REACTION-LIST - RXN-7566
REACTION-LIST - RXN-8755
REACTION-LIST - RXN0-902
REACTION-LIST - RXN-8752
REACTION-LIST - RXN0-901
REACTION-LIST - 1.2.1.2-RXN
REACTION-LIST - FORMATETHFLIG-RXN
REACTION-LIST - METHENYLTHFCYCLOHYDRO-RXN
REACTION-LIST - 4.3.1.4-RXN
REACTION-LIST - GLYCINE-FORMIMINOTRANSFERASE-RXN
REACTION-LIST - R63-RXN
REACTION-LIST - R13-RXN
REACTION-LIST - R62-RXN
REACTION-LIST - R128-RXN
REACTION-LIST - R127-RXN
REACTION-LIST - GUANINE-DEAMINASE-RXN
SYNONYMS - purine fermentation
//
UNIQUE-ID - SALVADEHYPOX-PWY
TYPES - Adenosine-Nucleotides-Degradation
COMMON-NAME - salvage pathways of adenine, hypoxanthine, and their nucleosides
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |arnaud|
PREDECESSORS - (RXN0-901 RXN0-902)
PREDECESSORS - (RXN0-902 INOPHOSPHOR-RXN)
PREDECESSORS - (AMP-NUCLEOSID-RXN ADENPRIBOSYLTRAN-RXN)
PREDECESSORS - (INOPHOSPHOR-RXN ADENODEAMIN-RXN)
PREDECESSORS - (INOPHOSPHOR-RXN DEOXYINOPHOSPHOR-RXN)
PREDECESSORS - (ADENODEAMIN-RXN ADENPHOSPHOR-RXN)
PREDECESSORS - (ADENPHOSPHOR-RXN AMP-NUCLEOSID-RXN)
PREDECESSORS - (ADENPRIBOSYLTRAN-RXN AMP-NUCLEOSID-RXN)
PREDECESSORS - (HYPOXANPRIBOSYLTRAN-RXN INOPHOSPHOR-RXN)
PREDECESSORS - (ADENPRIBOSYLTRAN-RXN DEOXYADENPHOSPHOR-RXN)
PREDECESSORS - (DEOXYADENPHOSPHOR-RXN ADDALT-RXN)
PREDECESSORS - (ADDALT-RXN DEOXYINOPHOSPHOR-RXN)
PREDECESSORS - (DEOXYINOPHOSPHOR-RXN INOPHOSPHOR-RXN)
PREDECESSORS - (INOSINEKIN-RXN ADENODEAMIN-RXN)
PRIMARIES - (GUANPHOSPHOR-RXN NIL (GUANINE))
PRIMARIES - (INOPHOSPHOR-RXN (INOSINE) NIL)
REACTION-LAYOUT - (HYPOXANPRIBOSYLTRAN-RXN (:LEFT-PRIMARIES IMP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES HYPOXANTHINE))
REACTION-LAYOUT - (RXN0-902 (:LEFT-PRIMARIES HYPOXANTHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHINE))
REACTION-LAYOUT - (RXN0-901 (:LEFT-PRIMARIES XANTHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES URATE))
REACTION-LAYOUT - (INOSINEKIN-RXN (:LEFT-PRIMARIES INOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES IMP))
REACTION-LAYOUT - (ADENODEAMIN-RXN (:LEFT-PRIMARIES ADENOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INOSINE))
REACTION-LAYOUT - (ADDALT-RXN (:LEFT-PRIMARIES DEOXYADENOSINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DEOXYINOSINE))
REACTION-LAYOUT - (ADENPHOSPHOR-RXN (:LEFT-PRIMARIES ADENOSINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES ADENINE))
REACTION-LAYOUT - (DEOXYADENPHOSPHOR-RXN (:LEFT-PRIMARIES ADENINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DEOXYADENOSINE))
REACTION-LAYOUT - (DEOXYINOPHOSPHOR-RXN (:LEFT-PRIMARIES DEOXYINOSINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES HYPOXANTHINE))
REACTION-LAYOUT - (INOPHOSPHOR-RXN (:LEFT-PRIMARIES INOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HYPOXANTHINE))
REACTION-LAYOUT - (ADENPRIBOSYLTRAN-RXN (:LEFT-PRIMARIES AMP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES ADENINE))
REACTION-LAYOUT - (AMP-NUCLEOSID-RXN (:LEFT-PRIMARIES AMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ADENINE))
REACTION-LIST - HYPOXANPRIBOSYLTRAN-RXN
REACTION-LIST - RXN0-902
REACTION-LIST - RXN0-901
REACTION-LIST - INOSINEKIN-RXN
REACTION-LIST - ADENODEAMIN-RXN
REACTION-LIST - ADDALT-RXN
REACTION-LIST - ADENPHOSPHOR-RXN
REACTION-LIST - DEOXYADENPHOSPHOR-RXN
REACTION-LIST - DEOXYINOPHOSPHOR-RXN
REACTION-LIST - INOPHOSPHOR-RXN
REACTION-LIST - ADENPRIBOSYLTRAN-RXN
REACTION-LIST - AMP-NUCLEOSID-RXN
SYNONYMS - purine ribonucleotide/ribonucleoside metabolism
//
UNIQUE-ID - PWY0-1391
TYPES - Methylthioadenosine-Degradation
COMMON-NAME - methylthioadenosine degradation
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |keseler|
PATHWAY-LINKS - (5-METHYLTHIOADENOSINE BSUBPOLYAMSYN-PWY)
PATHWAY-LINKS - (CPD-560 "excreted into the environment")
PREDECESSORS - (METHYLTHIOADENOSINE-NUCLEOSIDASE-RXN)
PRIMARIES - (METHYLTHIOADENOSINE-NUCLEOSIDASE-RXN (5-METHYLTHIOADENOSINE) (CPD-560))
REACTION-LAYOUT - (METHYLTHIOADENOSINE-NUCLEOSIDASE-RXN (:LEFT-PRIMARIES 5-METHYLTHIOADENOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-560))
REACTION-LIST - METHYLTHIOADENOSINE-NUCLEOSIDASE-RXN
//
UNIQUE-ID - PWY-5691
TYPES - Urate-Degradation
COMMON-NAME - urate degradation to allantoin
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (S-ALLANTOIN |Allantoin-degradation|)
PATHWAY-LINKS - (URATE PWY-5044)
PREDECESSORS - (3.5.2.17-RXN URATE-OXIDASE-RXN)
PREDECESSORS - (RXN-6201 3.5.2.17-RXN)
PRIMARIES - (R14-RXN NIL (GLYOX))
PRIMARIES - (UREIDOGLYCOLATE-LYASE-RXN (CPD-1091) (GLYOX))
REACTION-LAYOUT - (3.5.2.17-RXN (:LEFT-PRIMARIES 5-HYDROXYISOURATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-5821))
REACTION-LAYOUT - (RXN-6201 (:LEFT-PRIMARIES CPD-5821) (:DIRECTION :L2R) (:RIGHT-PRIMARIES S-ALLANTOIN))
REACTION-LAYOUT - (URATE-OXIDASE-RXN (:LEFT-PRIMARIES URATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-HYDROXYISOURATE))
REACTION-LIST - 3.5.2.17-RXN
REACTION-LIST - RXN-6201
REACTION-LIST - URATE-OXIDASE-RXN
//
UNIQUE-ID - PWY-283
TYPES - Benzoate-Degradation
COMMON-NAME - benzoate degradation II (aerobic and anaerobic)
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - |krieger|
CREDITS - SRI
CREDITS - |caspi|
PRIMARIES - (BENZOATE--COA-LIGASE-RXN (BENZOATE) (BENZOYLCOA))
REACTION-LAYOUT - (BENZOATE--COA-LIGASE-RXN (:LEFT-PRIMARIES BENZOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES BENZOYLCOA))
REACTION-LIST - BENZOATE--COA-LIGASE-RXN
SYNONYMS - benzoate oxidation
SYNONYMS - benzoate degradation
SYNONYMS - benzoic acid degradation
SYNONYMS - benzoic acid oxidation
//
UNIQUE-ID - PWY-5934
TYPES - Noncarbon-Nutrients
COMMON-NAME - Fe(III)-reduction and Fe(II) transport
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - O-27
CREDITS - |pujar|
PATHWAY-LINKS - (FE+3 (PWY-5912 . :INCOMING))
PREDECESSORS - (TRANS-RXN-171 FERRIC-CHELATE-REDUCTASE-RXN)
PREDECESSORS - (FERRIC-CHELATE-REDUCTASE-RXN)
PRIMARIES - (FERRIC-CHELATE-REDUCTASE-RXN (FE+3) (FE+2))
REACTION-LAYOUT - (TRANS-RXN-171 (:LEFT-PRIMARIES FE+2) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FE+2))
REACTION-LAYOUT - (FERRIC-CHELATE-REDUCTASE-RXN (:LEFT-PRIMARIES FE+3) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FE+2))
REACTION-LIST - TRANS-RXN-171
REACTION-LIST - FERRIC-CHELATE-REDUCTASE-RXN
SYNONYMS - Fe(III)-reduction
SYNONYMS - Fe(II) transport
SYNONYMS - Fe(III)-chelation and Fe(II) transport
SYNONYMS - strategy I iron uptake
//
UNIQUE-ID - PWY-5340
TYPES - Activation
TYPES - Sulfur-Assimilation
COMMON-NAME - sulfate activation for sulfonation
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (APS (SULFMETII-PWY . :OUTGOING))
PATHWAY-LINKS - (PAPS PWY-1187)
PREDECESSORS - (ADENYLYLSULFKIN-RXN SULFATE-ADENYLYLTRANS-RXN)
PREDECESSORS - (SULFATE-ADENYLYLTRANS-RXN)
PRIMARIES - (ACSERLY-RXN NIL (CYS))
PRIMARIES - (ADENYLYLSULFKIN-RXN (APS) (PAPS))
PRIMARIES - (SULFITE-REDUCTASE-FERREDOXIN-RXN (SO3) (HS))
PRIMARIES - (1.8.4.9-RXN (APS) (SO3))
PRIMARIES - (HOMOCYSMET-RXN (HOMO-CYS) (MET))
PRIMARIES - (SERINE-O-ACETTRAN-RXN (SER) (ACETYLSERINE))
PRIMARIES - (SULFATE-ADENYLYLTRANS-RXN (SULFATE) (APS))
REACTION-LAYOUT - (ADENYLYLSULFKIN-RXN (:LEFT-PRIMARIES APS) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PAPS))
REACTION-LAYOUT - (SULFATE-ADENYLYLTRANS-RXN (:LEFT-PRIMARIES SULFATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES APS))
REACTION-LIST - ADENYLYLSULFKIN-RXN
REACTION-LIST - SULFATE-ADENYLYLTRANS-RXN
SYNONYMS - sulfation pathway
//
UNIQUE-ID - PWY-5278
TYPES - Sulfite-Oxidation
COMMON-NAME - sulfite oxidation III
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - SRI
CREDITS - |caspi|
KEY-REACTIONS - ADENYLYLSULFATE-REDUCTASE-RXN
PREDECESSORS - (SULFATE-ADENYLYLTRANS-RXN ADENYLYLSULFATE-REDUCTASE-RXN)
PREDECESSORS - (ADENYLYLSULFATE-REDUCTASE-RXN)
PRIMARIES - (SULFATE-ADENYLYLTRANS-RXN NIL (SULFATE))
PRIMARIES - (ADENYLYLSULFATE-REDUCTASE-RXN (SO3) NIL)
PRIMARIES - (SULFITE-DEHYDROGENASE-RXN (SO3) (SULFATE))
REACTION-LAYOUT - (SULFATE-ADENYLYLTRANS-RXN (:LEFT-PRIMARIES SULFATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES APS))
REACTION-LAYOUT - (ADENYLYLSULFATE-REDUCTASE-RXN (:LEFT-PRIMARIES SO3) (:DIRECTION :L2R) (:RIGHT-PRIMARIES APS))
REACTION-LIST - SULFATE-ADENYLYLTRANS-RXN
REACTION-LIST - ADENYLYLSULFATE-REDUCTASE-RXN
//
UNIQUE-ID - SULFMETII-PWY
TYPES - Sulfate-Reduction
COMMON-NAME - sulfate reduction II (assimilatory)
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - |caspi|
CREDITS - SRI
CREDITS - |Iourovitski|
PATHWAY-LINKS - (APS (PWY-5340 . :OUTGOING))
PATHWAY-LINKS - (HS CYSTSYN-PWY)
PREDECESSORS - (SULFATE-ADENYLYLTRANS-RXN)
PREDECESSORS - (1.8.4.9-RXN SULFATE-ADENYLYLTRANS-RXN)
PREDECESSORS - (SULFITE-REDUCTASE-FERREDOXIN-RXN 1.8.4.9-RXN)
PRIMARIES - (ACSERLY-RXN NIL (CYS))
PRIMARIES - (ADENYLYLSULFKIN-RXN (APS) (PAPS))
PRIMARIES - (SULFITE-REDUCTASE-FERREDOXIN-RXN (SO3) (HS))
PRIMARIES - (1.8.4.9-RXN (APS) (SO3))
PRIMARIES - (HOMOCYSMET-RXN (HOMO-CYS) (MET))
PRIMARIES - (SERINE-O-ACETTRAN-RXN (SER) (ACETYLSERINE))
PRIMARIES - (SULFATE-ADENYLYLTRANS-RXN (SULFATE) (APS))
REACTION-LAYOUT - (1.8.4.9-RXN (:LEFT-PRIMARIES SO3) (:DIRECTION :R2L) (:RIGHT-PRIMARIES APS))
REACTION-LAYOUT - (SULFITE-REDUCTASE-FERREDOXIN-RXN (:LEFT-PRIMARIES HS) (:DIRECTION :R2L) (:RIGHT-PRIMARIES SO3))
REACTION-LAYOUT - (SULFATE-ADENYLYLTRANS-RXN (:LEFT-PRIMARIES SULFATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES APS))
REACTION-LIST - 1.8.4.9-RXN
REACTION-LIST - SULFITE-REDUCTASE-FERREDOXIN-RXN
REACTION-LIST - SULFATE-ADENYLYLTRANS-RXN
SYNONYMS - sulfur metabolism
SYNONYMS - sulfur assimilation
//
UNIQUE-ID - PWY-5350
TYPES - Thiosulfate-Disproportionation
COMMON-NAME - thiosulfate disproportionation III (rhodanese)
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |caspi|
PREDECESSORS - (THIOSULFATE-SULFURTRANSFERASE-RXN)
PRIMARIES - (THIOSULFATE-SULFURTRANSFERASE-RXN (S2O3) (SO3 HSCN))
REACTION-LAYOUT - (THIOSULFATE-SULFURTRANSFERASE-RXN (:LEFT-PRIMARIES S2O3) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HSCN SO3))
REACTION-LIST - THIOSULFATE-SULFURTRANSFERASE-RXN
//
UNIQUE-ID - PWY-4984
TYPES - NITROGEN-DEG
COMMON-NAME - urea cycle
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - SRI
CREDITS - |caspi|
PREDECESSORS - (ORNCARBAMTRANSFER-RXN 6.3.4.16-RXN)
PREDECESSORS - (ARGSUCCINSYN-RXN ORNCARBAMTRANSFER-RXN)
PREDECESSORS - (ARGSUCCINLYA-RXN ARGSUCCINSYN-RXN)
PREDECESSORS - (ARGINASE-RXN ARGSUCCINLYA-RXN)
PREDECESSORS - (ORNCARBAMTRANSFER-RXN ARGINASE-RXN)
PRIMARIES - (6.3.4.16-RXN (AMMONIA) (CARBAMOYL-P))
REACTION-LAYOUT - (6.3.4.16-RXN (:LEFT-PRIMARIES AMMONIA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CARBAMOYL-P))
REACTION-LAYOUT - (ARGINASE-RXN (:LEFT-PRIMARIES ARG) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-ORNITHINE))
REACTION-LAYOUT - (ARGSUCCINLYA-RXN (:LEFT-PRIMARIES L-ARGININO-SUCCINATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ARG))
REACTION-LAYOUT - (ARGSUCCINSYN-RXN (:LEFT-PRIMARIES L-CITRULLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-ARGININO-SUCCINATE))
REACTION-LAYOUT - (ORNCARBAMTRANSFER-RXN (:LEFT-PRIMARIES CARBAMOYL-P L-ORNITHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-CITRULLINE))
REACTION-LIST - 6.3.4.16-RXN
REACTION-LIST - ARGINASE-RXN
REACTION-LIST - ARGSUCCINLYA-RXN
REACTION-LIST - ARGSUCCINSYN-RXN
REACTION-LIST - ORNCARBAMTRANSFER-RXN
SYNONYMS - Krebs ornithine cycle
SYNONYMS - Krebs-Henseleit cycle
//
UNIQUE-ID - PWY-381
TYPES - Nitrate-Reduction
COMMON-NAME - nitrate reduction II (assimilatory)
CITATIONS - :EV-COMP-AINF:3497824356:liya
PREDECESSORS - (GLUTAMINESYN-RXN FERREDOXIN--NITRITE-REDUCTASE-RXN)
PREDECESSORS - (FERREDOXIN--NITRITE-REDUCTASE-RXN NITRATE-REDUCTASE-NADH-RXN)
PRIMARIES - (GLUTAMINESYN-RXN (AMMONIA) (GLN))
REACTION-LAYOUT - (FERREDOXIN--NITRITE-REDUCTASE-RXN (:LEFT-PRIMARIES AMMONIA) (:DIRECTION :R2L) (:RIGHT-PRIMARIES NITRITE))
REACTION-LAYOUT - (GLUTAMINESYN-RXN (:LEFT-PRIMARIES AMMONIA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLN))
REACTION-LAYOUT - (NITRATE-REDUCTASE-NADH-RXN (:LEFT-PRIMARIES NITRITE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES NITRATE))
REACTION-LIST - FERREDOXIN--NITRITE-REDUCTASE-RXN
REACTION-LIST - GLUTAMINESYN-RXN
REACTION-LIST - NITRATE-REDUCTASE-NADH-RXN
SYNONYMS - nitrate assimilation
//
UNIQUE-ID - PWY-1081
TYPES - Sugars-And-Polysaccharides
COMMON-NAME - homogalacturonan degradation
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - O-28
CREDITS - |pujar|
PRIMARIES - (RXN-2103 NIL NIL)
REACTION-LAYOUT - (RXN-2103 (:LEFT-PRIMARIES |1-4-alpha-D-galacturonosyl|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |1-4-alpha-D-galacturonosyl| |1-4-alpha-D-galacturonosyl|))
REACTION-LAYOUT - (RXN-2102 (:LEFT-PRIMARIES |Methylesterified-homogalacturonan|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES METOH |1-4-alpha-D-galacturonosyl|))
REACTION-LIST - RXN-2103
REACTION-LIST - RXN-2102
SYNONYMS - pectin degradation
//
UNIQUE-ID - PWY0-1300
TYPES - Sugars-And-Polysaccharides
COMMON-NAME - 2-O-α-mannosyl-D-glycerate degradation
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - TIGR
CREDITS - |djohnson|
KEY-REACTIONS - RXN0-5216
PATHWAY-LINKS - (2-PG GLUCONEO-PWY GLYCOLYSIS)
PREDECESSORS - (GKI-RXN RXN0-5216)
PRIMARIES - (RXN0-2522 (2-O-ALPHA-MANNOSYL-D-GLYCERATE) (CPD0-1063))
REACTION-LAYOUT - (GKI-RXN (:LEFT-PRIMARIES GLYCERATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-PG))
REACTION-LAYOUT - (RXN0-5216 (:LEFT-PRIMARIES CPD0-1063) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLYCERATE))
REACTION-LIST - GKI-RXN
REACTION-LIST - RXN0-5216
//
UNIQUE-ID - PWY-3861
TYPES - Sugars-And-Polysaccharides
COMMON-NAME - mannitol degradation II
CITATIONS - :EV-COMP-AINF:3497824356:liya
PATHWAY-LINKS - (FRUCTOSE-6P GLYCOLYSIS)
PREDECESSORS - (1.1.1.255-RXN)
PREDECESSORS - (MANNKIN-RXN 1.1.1.255-RXN)
PREDECESSORS - (MANNPISOM-RXN MANNKIN-RXN)
PRIMARIES - (MANNPISOM-RXN (MANNOSE-6P) (FRUCTOSE-6P))
PRIMARIES - (MANNKIN-RXN (MANNOSE) (MANNOSE-6P))
PRIMARIES - (1.1.1.255-RXN (MANNITOL) (MANNOSE))
REACTION-LAYOUT - (1.1.1.255-RXN (:LEFT-PRIMARIES MANNITOL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MANNOSE))
REACTION-LAYOUT - (MANNKIN-RXN (:LEFT-PRIMARIES MANNOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MANNOSE-6P))
REACTION-LAYOUT - (MANNPISOM-RXN (:LEFT-PRIMARIES MANNOSE-6P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-6P))
REACTION-LIST - 1.1.1.255-RXN
REACTION-LIST - MANNKIN-RXN
REACTION-LIST - MANNPISOM-RXN
//
UNIQUE-ID - GLUCOSE1PMETAB-PWY
TYPES - Sugars-And-Polysaccharides
COMMON-NAME - glucose and glucose-1-phosphate degradation
CITATIONS - :EV-COMP-AINF:3497824357:liya
PREDECESSORS - (GLUC1PURIDYLTRANS-RXN)
PRIMARIES - (GLUCDEHYDROG-RXN (GLC) (GLC-D-LACTONE))
REACTION-LAYOUT - (GLUCOKIN-RXN (:LEFT-PRIMARIES GLC) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLC-6-P))
REACTION-LAYOUT - (PHOSPHOGLUCMUT-RXN (:LEFT-PRIMARIES GLC-1-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALPHA-GLC-6-P))
REACTION-LAYOUT - (GLUCOSE-1-PHOSPHAT-RXN (:LEFT-PRIMARIES GLC-1-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |D-Glucose|))
REACTION-LAYOUT - (GLUCDEHYDROG-RXN (:LEFT-PRIMARIES GLC) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLC-D-LACTONE))
REACTION-LIST - GLUCOKIN-RXN
REACTION-LIST - PHOSPHOGLUCMUT-RXN
REACTION-LIST - GLUCOSE-1-PHOSPHAT-RXN
REACTION-LIST - GLUCDEHYDROG-RXN
//
UNIQUE-ID - PWY0-1301
TYPES - Sugars-And-Polysaccharides
COMMON-NAME - melibiose degradation
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - TIGR
CREDITS - |djohnson|
PATHWAY-LINKS - (GALACTOSE PWY-6317)
PATHWAY-LINKS - (GLC GLUCOSE1PMETAB-PWY)
PREDECESSORS - (ALPHAGALACTOSID-RXN)
REACTION-LAYOUT - (ALPHAGALACTOSID-RXN (:LEFT-PRIMARIES MELIBIOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GALACTOSE GLC))
REACTION-LIST - ALPHAGALACTOSID-RXN
//
UNIQUE-ID - MANNCAT-PWY
TYPES - Sugars-And-Polysaccharides
COMMON-NAME - D-mannose degradation
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |keseler|
CREDITS - O-18
CREDITS - |riley|
PATHWAY-LINKS - (MANNOSE-6P (MANNKIN-RXN . :INCOMING))
PATHWAY-LINKS - (FRUCTOSE-6P GLYCOLYSIS)
REACTION-LAYOUT - (MANNPISOM-RXN (:LEFT-PRIMARIES MANNOSE-6P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-6P))
REACTION-LIST - MANNPISOM-RXN
SYNONYMS - mannose degradation
//
UNIQUE-ID - PWY0-1182
TYPES - Trehalose-Degradation
COMMON-NAME - trehalose degradation II (trehalase)
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - SRI
CREDITS - |caspi|
KEY-REACTIONS - TREHALA-RXN
PATHWAY-LINKS - (GLC-6-P GLYCOLYSIS)
PATHWAY-LINKS - (TREHALOSE TRESYN-PWY)
PREDECESSORS - (GLUCOKIN-RXN TREHALA-RXN)
PREDECESSORS - (TREHALA-RXN)
REACTION-LAYOUT - (GLUCOKIN-RXN (:LEFT-PRIMARIES GLC) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLC-6-P))
REACTION-LAYOUT - (TREHALA-RXN (:LEFT-PRIMARIES TREHALOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLC))
REACTION-LIST - GLUCOKIN-RXN
REACTION-LIST - TREHALA-RXN
//
UNIQUE-ID - PWY-621
TYPES - SUCROSE-DEG
COMMON-NAME - sucrose degradation III
CITATIONS - :EV-COMP-AINF:3497824357:liya
PATHWAY-LINKS - (FRUCTOSE-6P (PWY-1042 . :OUTGOING))
PATHWAY-LINKS - (ALPHA-GLC-6-P (PWY-622 . :OUTGOING))
PATHWAY-LINKS - (GLC-1-P (PWY-622 . :OUTGOING))
PREDECESSORS - (SUCROSE-SYNTHASE-RXN)
PREDECESSORS - (RXN-1685 RXN-1461)
PREDECESSORS - (GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN RXN-1685)
PREDECESSORS - (PGLUCISOM-RXN GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN)
PREDECESSORS - (FRUCTOKINASE-RXN RXN-1461)
PREDECESSORS - (FRUCTOKINASE-RXN SUCROSE-SYNTHASE-RXN)
PREDECESSORS - (GLUC1PURIDYLTRANS-RXN SUCROSE-SYNTHASE-RXN)
PREDECESSORS - (GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN PHOSPHOGLUCMUT-RXN)
PREDECESSORS - (RXN-1461 GLUC1PURIDYLTRANS-RXN)
PREDECESSORS - (PHOSPHOGLUCMUT-RXN GLUC1PURIDYLTRANS-RXN)
PRIMARIES - (PHOSPHOGLUCMUT-RXN (GLC-1-P) (ALPHA-GLC-6-P))
PRIMARIES - (GLUC1PURIDYLTRANS-RXN (UDP-GLUCOSE) (GLC-1-P))
PRIMARIES - (FRUCTOKINASE-RXN (FRU) (FRUCTOSE-6P))
PRIMARIES - (PGLUCISOM-RXN (GLC-6-P) (FRUCTOSE-6P))
PRIMARIES - (GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN (ALPHA-GLC-6-P) (GLC-6-P))
PRIMARIES - (RXN-1685 (ALPHA-GLUCOSE) (GLC-6-P))
PRIMARIES - (SUCROSE-SYNTHASE-RXN (SUCROSE) (FRU UDP-GLUCOSE))
PRIMARIES - (RXN-1461 (SUCROSE) (FRU ALPHA-GLUCOSE))
PRIMARIES - (ALDOSE-1-EPIMERASE-RXN (ALPHA-GLUCOSE) (GLC))
PRIMARIES - (GLUCOKIN-RXN (GLC) (CPD-222))
REACTION-LAYOUT - (GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN (:LEFT-PRIMARIES ALPHA-GLC-6-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLC-6-P))
REACTION-LAYOUT - (RXN-1685 (:LEFT-PRIMARIES ALPHA-GLUCOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALPHA-GLC-6-P))
REACTION-LAYOUT - (SUCROSE-SYNTHASE-RXN (:LEFT-PRIMARIES FRU UDP-GLUCOSE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES SUCROSE))
REACTION-LAYOUT - (GLUC1PURIDYLTRANS-RXN (:LEFT-PRIMARIES GLC-1-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES UDP-GLUCOSE))
REACTION-LAYOUT - (PHOSPHOGLUCMUT-RXN (:LEFT-PRIMARIES GLC-1-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALPHA-GLC-6-P))
REACTION-LAYOUT - (PGLUCISOM-RXN (:LEFT-PRIMARIES GLC-6-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-6P))
REACTION-LAYOUT - (RXN-1461 (:LEFT-PRIMARIES SUCROSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALPHA-GLUCOSE FRU))
REACTION-LAYOUT - (FRUCTOKINASE-RXN (:LEFT-PRIMARIES FRU) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-6P))
REACTION-LIST - GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN
REACTION-LIST - RXN-1685
REACTION-LIST - SUCROSE-SYNTHASE-RXN
REACTION-LIST - GLUC1PURIDYLTRANS-RXN
REACTION-LIST - PHOSPHOGLUCMUT-RXN
REACTION-LIST - PGLUCISOM-RXN
REACTION-LIST - RXN-1461
REACTION-LIST - FRUCTOKINASE-RXN
SYNONYMS - sucrose mobilization
//
UNIQUE-ID - SUCUTIL-PWY
TYPES - SUCROSE-DEG
COMMON-NAME - sucrose degradation I
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - |hying|
CREDITS - SRI
CREDITS - |fulcher|
KEY-REACTIONS - 3.2.1.26-RXN
PATHWAY-LINKS - (SUCROSE-6P (SUCROSEPHOSPHO-RXN . :INCOMING))
PATHWAY-LINKS - (FRUCTOSE-6P GLYCOLYSIS)
PATHWAY-LINKS - (GLC-6-P GLYCOLYSIS)
PREDECESSORS - (FRUCTOKINASE-RXN 3.2.1.26-RXN)
PRIMARIES - (SUCROSEPHOSPHO-RXN (SUCROSE) (SUCROSE-6P))
PRIMARIES - (3.2.1.26-RXN (SUCROSE-6P) (GLC-6-P FRU))
REACTION-LAYOUT - (FRUCTOKINASE-RXN (:LEFT-PRIMARIES FRU) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-6P))
REACTION-LAYOUT - (3.2.1.26-RXN (:LEFT-PRIMARIES SUCROSE-6P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLC-6-P FRU))
REACTION-LIST - FRUCTOKINASE-RXN
REACTION-LIST - 3.2.1.26-RXN
SYNONYMS - sucrose degradation 1
//
UNIQUE-ID - XYLCAT-PWY
TYPES - Xylose-Degradation
COMMON-NAME - xylose degradation I
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - O-18
CREDITS - |riley|
CREDITS - O0-3
CREDITS - |ingraham|
PATHWAY-LINKS - (XYLULOSE-5-PHOSPHATE NONOXIPENT-PWY)
PREDECESSORS - (XYLULOKIN-RXN XYLISOM-RXN)
PREDECESSORS - (XYLISOM-RXN)
REACTION-LAYOUT - (XYLISOM-RXN (:LEFT-PRIMARIES XYLOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES D-XYLULOSE))
REACTION-LAYOUT - (XYLULOKIN-RXN (:LEFT-PRIMARIES D-XYLULOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XYLULOSE-5-PHOSPHATE))
REACTION-LIST - XYLISOM-RXN
REACTION-LIST - XYLULOKIN-RXN
SYNONYMS - xylose catabolism
//
UNIQUE-ID - PWY-6317
TYPES - GALACTOSE-DEGRADATION
COMMON-NAME - galactose degradation I (Leloir pathway)
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (GLC-6-P GLYCOLYSIS)
PREDECESSORS - (UDPGLUCEPIM-RXN GALACTURIDYLYLTRANS-RXN)
PREDECESSORS - (BETA-PHOSPHOGLUCOMUTASE-RXN RXN-10639)
PREDECESSORS - (RXN-10639 GALACTURIDYLYLTRANS-RXN)
PREDECESSORS - (BETA-PHOSPHOGLUCOMUTASE-RXN GALACTURIDYLYLTRANS-RXN)
PREDECESSORS - (GALACTOKIN-RXN ALDOSE1EPIM-RXN)
PREDECESSORS - (GALACTURIDYLYLTRANS-RXN GALACTOKIN-RXN)
PRIMARIES - (GALACTURIDYLYLTRANS-RXN (GALACTOSE-1P) (GLC-1-P UDP-GALACTOSE))
PRIMARIES - (BETA-PHOSPHOGLUCOMUTASE-RXN (CPD-448) (GLC-6-P))
PRIMARIES - (GLUC1PURIDYLTRANS-RXN (GLC-1-P) NIL)
REACTION-LAYOUT - (RXN-10639 (:LEFT-PRIMARIES GLC-1-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-448))
REACTION-LAYOUT - (ALDOSE1EPIM-RXN (:LEFT-PRIMARIES GALACTOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALPHA-D-GALACTOSE))
REACTION-LAYOUT - (BETA-PHOSPHOGLUCOMUTASE-RXN (:LEFT-PRIMARIES CPD-448) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLC-6-P))
REACTION-LAYOUT - (UDPGLUCEPIM-RXN (:LEFT-PRIMARIES UDP-GLUCOSE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES UDP-GALACTOSE))
REACTION-LAYOUT - (GALACTURIDYLYLTRANS-RXN (:LEFT-PRIMARIES GALACTOSE-1P UDP-GLUCOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP-GALACTOSE GLC-1-P))
REACTION-LAYOUT - (GALACTOKIN-RXN (:LEFT-PRIMARIES ALPHA-D-GALACTOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GALACTOSE-1P))
REACTION-LIST - RXN-10639
REACTION-LIST - ALDOSE1EPIM-RXN
REACTION-LIST - BETA-PHOSPHOGLUCOMUTASE-RXN
REACTION-LIST - UDPGLUCEPIM-RXN
REACTION-LIST - GALACTURIDYLYLTRANS-RXN
REACTION-LIST - GALACTOKIN-RXN
SYNONYMS - Leloir pathway
//
UNIQUE-ID - PWY-3821
TYPES - SUGAR-NUCLEOTIDES
TYPES - GALACTOSE-DEGRADATION
COMMON-NAME - galactose degradation III
CITATIONS - :EV-COMP-AINF:3497824357:liya
PREDECESSORS - (UGD-RXN UDPGLUCEPIM-RXN)
PREDECESSORS - (UDPGLUCEPIM-RXN UTPHEXPURIDYLYLTRANS-RXN)
PREDECESSORS - (UTPHEXPURIDYLYLTRANS-RXN GALACTOKIN-RXN)
PREDECESSORS - (GLUC1PURIDYLTRANS-RXN UDPGLUCEPIM-RXN)
PREDECESSORS - (SUCROSE-SYNTHASE-RXN UDPGLUCEPIM-RXN)
PRIMARIES - (UGD-RXN (UDP-GLUCOSE) (UDP-GLUCURONATE))
PRIMARIES - (SUCROSE-SYNTHASE-RXN (UDP-GLUCOSE) (SUCROSE))
PRIMARIES - (GLUC1PURIDYLTRANS-RXN (UDP-GLUCOSE) (GLC-1-P))
PRIMARIES - (UDPGLUCEPIM-RXN (UDP-GALACTOSE) (UDP-GLUCOSE))
PRIMARIES - (UTPHEXPURIDYLYLTRANS-RXN (GALACTOSE-1P) (UDP-GALACTOSE))
REACTION-LAYOUT - (UGD-RXN (:LEFT-PRIMARIES UDP-GLUCOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP-GLUCURONATE))
REACTION-LAYOUT - (GLUC1PURIDYLTRANS-RXN (:LEFT-PRIMARIES GLC-1-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES UDP-GLUCOSE))
REACTION-LAYOUT - (SUCROSE-SYNTHASE-RXN (:LEFT-PRIMARIES UDP-GLUCOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SUCROSE))
REACTION-LAYOUT - (UDPGLUCEPIM-RXN (:LEFT-PRIMARIES UDP-GLUCOSE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES UDP-GALACTOSE))
REACTION-LAYOUT - (UTPHEXPURIDYLYLTRANS-RXN (:LEFT-PRIMARIES GALACTOSE-1P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP-GALACTOSE))
REACTION-LAYOUT - (GALACTOKIN-RXN (:LEFT-PRIMARIES ALPHA-D-GALACTOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GALACTOSE-1P))
REACTION-LIST - UGD-RXN
REACTION-LIST - GLUC1PURIDYLTRANS-RXN
REACTION-LIST - SUCROSE-SYNTHASE-RXN
REACTION-LIST - UDPGLUCEPIM-RXN
REACTION-LIST - UTPHEXPURIDYLYLTRANS-RXN
REACTION-LIST - GALACTOKIN-RXN
SYNONYMS - UDP-D-galatose biosynthesis (from D-galactose)
//
UNIQUE-ID - PWY-6299
TYPES - Abscisic-Acid-Biosynthesis
TYPES - Aldehyde-Degradation
COMMON-NAME - aldehyde oxidation I
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - O-28
CREDITS - |pujar|
PATHWAY-LINKS - (CPD-692 PWY-695)
PATHWAY-LINKS - (BENZALDEHYDE (PWY-695 . :INCOMING))
PATHWAY-LINKS - (|Aldehydes| (PWY-695 . :INCOMING))
PREDECESSORS - (RXN-8088)
PREDECESSORS - (ALDEHYDE-OXIDASE-RXN)
PREDECESSORS - (1.2.3.14-RXN)
REACTION-LAYOUT - (1.2.3.14-RXN (:LEFT-PRIMARIES CPD-692) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-693))
REACTION-LAYOUT - (RXN-8088 (:LEFT-PRIMARIES BENZALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES BENZOATE))
REACTION-LAYOUT - (ALDEHYDE-OXIDASE-RXN (:LEFT-PRIMARIES |Aldehydes|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Acids|))
REACTION-LIST - 1.2.3.14-RXN
REACTION-LIST - RXN-8088
REACTION-LIST - ALDEHYDE-OXIDASE-RXN
//
UNIQUE-ID - PWYQT-4429
TYPES - CO2-Fixation
COMMON-NAME - CO2 fixation into oxaloacetate
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - |tissier|
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - SRI
CREDITS - |caspi|
PREDECESSORS - (PEPCARBOX-RXN)
PRIMARIES - (PEPCARBOX-RXN (CARBON-DIOXIDE) (OXALACETIC_ACID))
REACTION-LAYOUT - (PEPCARBOX-RXN (:LEFT-PRIMARIES OXALACETIC_ACID) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CARBON-DIOXIDE))
REACTION-LIST - PEPCARBOX-RXN
//
UNIQUE-ID - PWY-1801
TYPES - Formaldehyde-Oxidation
COMMON-NAME - formaldehyde oxidation II (glutathione-dependent)
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |caspi|
PREDECESSORS - (RXN-2961)
PREDECESSORS - (RXN-2962 RXN-2961)
PREDECESSORS - (S-FORMYLGLUTATHIONE-HYDROLASE-RXN RXN-2962)
PRIMARIES - (RXN-2962 (S-HYDROXYMETHYLGLUTATHIONE) (CPD-548))
PRIMARIES - (RXN-2961 (FORMALDEHYDE) (S-HYDROXYMETHYLGLUTATHIONE))
PRIMARIES - (S-FORMYLGLUTATHIONE-HYDROLASE-RXN (CPD-548) (FORMATE))
PRIMARIES - (1.2.1.1-RXN (FORMALDEHYDE) (CPD-548))
REACTION-LAYOUT - (RXN-2962 (:LEFT-PRIMARIES S-HYDROXYMETHYLGLUTATHIONE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-548))
REACTION-LAYOUT - (RXN-2961 (:LEFT-PRIMARIES S-HYDROXYMETHYLGLUTATHIONE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES FORMALDEHYDE))
REACTION-LAYOUT - (S-FORMYLGLUTATHIONE-HYDROLASE-RXN (:LEFT-PRIMARIES CPD-548) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FORMATE))
REACTION-LIST - RXN-2962
REACTION-LIST - RXN-2961
REACTION-LIST - S-FORMYLGLUTATHIONE-HYDROLASE-RXN
SYNONYMS - formaldehyde oxidation II (GSH-dependent)
//
UNIQUE-ID - PWY-4101
TYPES - SUGAR-ALCOHOLS-DEG
COMMON-NAME - sorbitol degradation I
CITATIONS - :EV-COMP-AINF:3497824356:liya
PREDECESSORS - (RXN-7644)
PRIMARIES - (RXN-7644 (SORBITOL) (FRU))
PRIMARIES - (PGLUCISOM-RXN (GLC-6-P) (FRUCTOSE-6P))
PRIMARIES - (F16ALDOLASE-RXN (FRUCTOSE-16-DIPHOSPHATE) (DIHYDROXY-ACETONE-PHOSPHATE GAP))
PRIMARIES - (ALDOSE-6-PHOSPHATE-REDUCTASE-NADPH-RXN (D-SORBITOL-6-P) (GLC-6-P))
PRIMARIES - (6PFRUCTPHOS-RXN (FRUCTOSE-6P) (FRUCTOSE-16-DIPHOSPHATE))
REACTION-LAYOUT - (RXN-7644 (:LEFT-PRIMARIES SORBITOL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRU))
REACTION-LIST - RXN-7644
SYNONYMS - sorbitol utilization
//
UNIQUE-ID - PWY-4562
TYPES - CYCLITOLS-DEG
TYPES - CYCLITOLS
COMMON-NAME - lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3)
CITATIONS - :EV-COMP-AINF:3497824356:liya
IN-PATHWAY - PWY-4765
PATHWAY-LINKS - (CPD-1107 PWY-4541)
PREDECESSORS - (RXN-7163 RXN-7184)
PREDECESSORS - (RXN-7163 2.7.1.140-RXN)
PREDECESSORS - (RXN-7184 2.7.1.139-RXN)
PREDECESSORS - (2.7.1.139-RXN)
PREDECESSORS - (2.7.1.140-RXN 2.7.1.133-RXN)
PREDECESSORS - (2.7.1.133-RXN)
PREDECESSORS - (RXN-7185 2.7.1.133-RXN)
PREDECESSORS - (RXN-7186 RXN-7185)
PRIMARIES - (RXN-7186 (CPD-6661) (MI-HEXAKISPHOSPHATE))
PRIMARIES - (RXN-7163 (CPD-1107) (MI-HEXAKISPHOSPHATE))
PRIMARIES - (RXN-7185 (CPD-505) (CPD-6661))
PRIMARIES - (RXN-7184 (CPD-506) (CPD-1107))
PRIMARIES - (2.7.1.140-RXN (CPD-505) (CPD-1107))
PRIMARIES - (2.7.1.133-RXN (INOSITOL-1-3-4-TRIPHOSPHATE) (CPD-505))
PRIMARIES - (2.7.1.139-RXN (INOSITOL-1-3-4-TRIPHOSPHATE) (CPD-506))
REACTION-LAYOUT - (RXN-7185 (:LEFT-PRIMARIES CPD-505) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6661))
REACTION-LAYOUT - (RXN-7186 (:LEFT-PRIMARIES CPD-6661) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MI-HEXAKISPHOSPHATE))
REACTION-LAYOUT - (RXN-7163 (:LEFT-PRIMARIES CPD-1107) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MI-HEXAKISPHOSPHATE))
REACTION-LAYOUT - (RXN-7184 (:LEFT-PRIMARIES CPD-506) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-1107))
REACTION-LAYOUT - (2.7.1.133-RXN (:LEFT-PRIMARIES INOSITOL-1-3-4-TRIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-505))
REACTION-LAYOUT - (2.7.1.140-RXN (:LEFT-PRIMARIES CPD-505) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-1107))
REACTION-LAYOUT - (2.7.1.139-RXN (:LEFT-PRIMARIES INOSITOL-1-3-4-TRIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-506))
REACTION-LIST - RXN-7185
REACTION-LIST - RXN-7186
REACTION-LIST - RXN-7163
REACTION-LIST - RXN-7184
REACTION-LIST - 2.7.1.133-RXN
REACTION-LIST - 2.7.1.140-RXN
REACTION-LIST - 2.7.1.139-RXN
SUPER-PATHWAYS - PWY-4765
SYNONYMS - lipid-dependent phytic acid biosynthesis II (via Ins(1,3,4)P3)
SYNONYMS - lipid-dependent InsP6 biosynthesis II (via Ins(1,3,4)P3)
//
UNIQUE-ID - PWY-4541
TYPES - CYCLITOLS-DEG
TYPES - CYCLITOLS
COMMON-NAME - lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3)
CITATIONS - :EV-COMP-AINF:3497824356:liya
IN-PATHWAY - PWY-4765
PATHWAY-LINKS - (CPD-1107 PWY-4562)
PATHWAY-LINKS - (INOSITOL-1-4-5-TRISPHOSPHATE LIPASYN-PWY)
PREDECESSORS - (RXN-7182 2.7.1.151-RXN)
PREDECESSORS - (2.7.1.151-RXN)
PREDECESSORS - (RXN-7162 2.7.1.151-RXN)
PREDECESSORS - (RXN-7163 RXN-7162)
PRIMARIES - (RXN-7184 (CPD-506) (CPD-1107))
PRIMARIES - (RXN-7182 (INOSITOL-1456-TETRAKISPHOSPHATE) (CPD-534))
PRIMARIES - (RXN-7163 (CPD-1107) (MI-HEXAKISPHOSPHATE))
PRIMARIES - (RXN-7162 (INOSITOL-1456-TETRAKISPHOSPHATE) (CPD-1107))
PRIMARIES - (2.7.1.151-RXN (INOSITOL-1-4-5-TRISPHOSPHATE) (INOSITOL-1456-TETRAKISPHOSPHATE))
REACTION-LAYOUT - (RXN-7182 (:LEFT-PRIMARIES INOSITOL-1456-TETRAKISPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-534))
REACTION-LAYOUT - (2.7.1.151-RXN (:LEFT-PRIMARIES INOSITOL-1-4-5-TRISPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INOSITOL-1456-TETRAKISPHOSPHATE))
REACTION-LAYOUT - (RXN-7162 (:LEFT-PRIMARIES INOSITOL-1456-TETRAKISPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-1107))
REACTION-LAYOUT - (RXN-7163 (:LEFT-PRIMARIES CPD-1107) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MI-HEXAKISPHOSPHATE))
REACTION-LIST - RXN-7182
REACTION-LIST - 2.7.1.151-RXN
REACTION-LIST - RXN-7162
REACTION-LIST - RXN-7163
SUPER-PATHWAYS - PWY-4765
SYNONYMS - lipid-dependent phytic acid biosynthesis I (via Ins(1,4,5)P3)
SYNONYMS - lipid-dependent InsP6 biosynthesis I (via Ins(1,4,5)P3)
//
UNIQUE-ID - PWY-4841
TYPES - SUGAR-NUCLEOTIDES
TYPES - CYCLITOLS-DEG
COMMON-NAME - UDP-D-glucuronate biosynthesis (from myo-inositol)
CITATIONS - :EV-COMP-AINF:3497824357:liya
KEY-REACTIONS - MYO-INOSITOL-OXYGENASE-RXN
PATHWAY-LINKS - (UDP-GLUCURONATE PWY-4861 PWY-4821)
PREDECESSORS - (2.7.7.44-RXN GLUCURONOKINASE-RXN)
PREDECESSORS - (GLUCURONOKINASE-RXN MYO-INOSITOL-OXYGENASE-RXN)
PREDECESSORS - (MYO-INOSITOL-OXYGENASE-RXN)
PRIMARIES - (2.7.7.44-RXN (CPD-510) (UDP-GLUCURONATE))
PRIMARIES - (GLUCURONOKINASE-RXN (GLUCURONATE) (CPD-510))
PRIMARIES - (MYO-INOSITOL-OXYGENASE-RXN (MYO-INOSITOL) (GLUCURONATE))
REACTION-LAYOUT - (2.7.7.44-RXN (:LEFT-PRIMARIES CPD-510) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP-GLUCURONATE))
REACTION-LAYOUT - (GLUCURONOKINASE-RXN (:LEFT-PRIMARIES GLUCURONATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-510))
REACTION-LAYOUT - (MYO-INOSITOL-OXYGENASE-RXN (:LEFT-PRIMARIES MYO-INOSITOL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLUCURONATE))
REACTION-LIST - 2.7.7.44-RXN
REACTION-LIST - GLUCURONOKINASE-RXN
REACTION-LIST - MYO-INOSITOL-OXYGENASE-RXN
SYNONYMS - UDP-D-GlcA biosynthesis
SYNONYMS - UDP-D-glucuronic acid biosynthesis
SYNONYMS - inositol oxidation pathway
//
UNIQUE-ID - PWY-4781
TYPES - Phytate-Degradation
COMMON-NAME - phytate degradation II
CITATIONS - :EV-COMP-AINF:3497824357:liya
PREDECESSORS - (RXN-7305 RXN-7304)
PREDECESSORS - (RXN-7302 RXN-7301)
PREDECESSORS - (RXN-7250 RXN-7302)
PREDECESSORS - (RXN-7246 RXN-7250)
PREDECESSORS - (RXN-7303 RXN-7301)
PREDECESSORS - (RXN-7304 RXN-7303)
PREDECESSORS - (6-PHYT-RXN)
PREDECESSORS - (RXN-7301 6-PHYT-RXN)
PRIMARIES - (RXN-7305 (CPD-6783) (CPD-6746))
PRIMARIES - (6-PHYT-RXN (MI-HEXAKISPHOSPHATE) (MI-PENTAKISPHOSPHATE))
PRIMARIES - (RXN-7304 (CPD-6782) (CPD-6783))
PRIMARIES - (RXN-7303 (CPD-6781) (CPD-6782))
PRIMARIES - (RXN-7246 (CPD-6747) (CPD-6746))
PRIMARIES - (RXN-7250 (CPD-6745) (CPD-6747))
PRIMARIES - (RXN-7302 (CPD-6781) (CPD-6745))
PRIMARIES - (RXN-7301 (MI-PENTAKISPHOSPHATE) (CPD-6781))
PRIMARIES - (RXN0-1001 (MI-HEXAKISPHOSPHATE) (CPD-534))
REACTION-LAYOUT - (RXN-7305 (:LEFT-PRIMARIES CPD-6783) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6746))
REACTION-LAYOUT - (6-PHYT-RXN (:LEFT-PRIMARIES MI-HEXAKISPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MI-PENTAKISPHOSPHATE))
REACTION-LAYOUT - (RXN-7246 (:LEFT-PRIMARIES CPD-6747) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6746))
REACTION-LAYOUT - (RXN-7250 (:LEFT-PRIMARIES CPD-6745) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6747))
REACTION-LAYOUT - (RXN-7301 (:LEFT-PRIMARIES MI-PENTAKISPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6781))
REACTION-LAYOUT - (RXN-7302 (:LEFT-PRIMARIES CPD-6781) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6745))
REACTION-LAYOUT - (RXN-7303 (:LEFT-PRIMARIES CPD-6781) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6782))
REACTION-LAYOUT - (RXN-7304 (:LEFT-PRIMARIES CPD-6782) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6783))
REACTION-LIST - RXN-7305
REACTION-LIST - 6-PHYT-RXN
REACTION-LIST - RXN-7246
REACTION-LIST - RXN-7250
REACTION-LIST - RXN-7301
REACTION-LIST - RXN-7302
REACTION-LIST - RXN-7303
REACTION-LIST - RXN-7304
//
UNIQUE-ID - PWY-4702
TYPES - Phytate-Degradation
COMMON-NAME - phytate degradation I
CITATIONS - :EV-COMP-AINF:3497824357:liya
PREDECESSORS - (RXN-7247 RXN-7241)
PREDECESSORS - (RXN-7249 RXN-7247)
PREDECESSORS - (RXN-7248 RXN-7247)
PREDECESSORS - (RXN-7250 RXN-7248)
PREDECESSORS - (RXN-7245 RXN-7249)
PREDECESSORS - (RXN-7246 RXN-7250)
PREDECESSORS - (RXN-7251 RXN-7250)
PREDECESSORS - (RXN-7252 RXN-7251)
PREDECESSORS - (RXN-7251 RXN-7245)
PREDECESSORS - (RXN-7253 RXN-7246)
PREDECESSORS - (RXN-7246 RXN-7245)
PREDECESSORS - (RXN-7245 RXN-7244)
PREDECESSORS - (RXN-7244 RXN-7243)
PREDECESSORS - (RXN-7244 RXN-7242)
PREDECESSORS - (RXN-7243 RXN0-1001)
PREDECESSORS - (RXN0-1001)
PREDECESSORS - (RXN-7241)
PREDECESSORS - (RXN-7242 RXN-7241)
PRIMARIES - (RXN-7247 (CPD-6741) (CPD-6743))
PRIMARIES - (RXN-7248 (CPD-6743) (CPD-6745))
PRIMARIES - (RXN-7249 (CPD-6743) (CPD-6744))
PRIMARIES - (RXN-7250 (CPD-6745) (CPD-6747))
PRIMARIES - (RXN-7251 (CPD-6747) (D-MYO-INOSITOL-1-MONOPHOSPHATE))
PRIMARIES - (RXN-7252 (D-MYO-INOSITOL-1-MONOPHOSPHATE) (MYO-INOSITOL))
PRIMARIES - (RXN-7253 (CPD-6746) (MYO-INOSITOL))
PRIMARIES - (RXN-7246 (CPD-6747) (CPD-6746))
PRIMARIES - (RXN-7245 (CPD-6744) (CPD-6747))
PRIMARIES - (RXN-7244 (CPD-6742) (CPD-6744))
PRIMARIES - (RXN-7243 (CPD-534) (CPD-6742))
PRIMARIES - (RXN-7242 (CPD-6741) (CPD-6742))
PRIMARIES - (RXN0-1001 (MI-HEXAKISPHOSPHATE) (CPD-534))
PRIMARIES - (RXN-7241 (MI-HEXAKISPHOSPHATE) (CPD-6741))
REACTION-LAYOUT - (RXN0-1001 (:LEFT-PRIMARIES MI-HEXAKISPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-534))
REACTION-LAYOUT - (RXN-7241 (:LEFT-PRIMARIES MI-HEXAKISPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6741))
REACTION-LAYOUT - (RXN-7242 (:LEFT-PRIMARIES CPD-6741) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6742))
REACTION-LAYOUT - (RXN-7243 (:LEFT-PRIMARIES CPD-534) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6742))
REACTION-LAYOUT - (RXN-7244 (:LEFT-PRIMARIES CPD-6742) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6744))
REACTION-LAYOUT - (RXN-7245 (:LEFT-PRIMARIES CPD-6744) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6747))
REACTION-LAYOUT - (RXN-7246 (:LEFT-PRIMARIES CPD-6747) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6746))
REACTION-LAYOUT - (RXN-7247 (:LEFT-PRIMARIES CPD-6741) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6743))
REACTION-LAYOUT - (RXN-7248 (:LEFT-PRIMARIES CPD-6743) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6745))
REACTION-LAYOUT - (RXN-7249 (:LEFT-PRIMARIES CPD-6743) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6744))
REACTION-LAYOUT - (RXN-7250 (:LEFT-PRIMARIES CPD-6745) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6747))
REACTION-LAYOUT - (RXN-7252 (:LEFT-PRIMARIES D-MYO-INOSITOL-1-MONOPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MYO-INOSITOL))
REACTION-LAYOUT - (RXN-7253 (:LEFT-PRIMARIES CPD-6746) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MYO-INOSITOL))
REACTION-LAYOUT - (RXN-7251 (:LEFT-PRIMARIES CPD-6747) (:DIRECTION :L2R) (:RIGHT-PRIMARIES D-MYO-INOSITOL-1-MONOPHOSPHATE))
REACTION-LIST - RXN0-1001
REACTION-LIST - RXN-7241
REACTION-LIST - RXN-7242
REACTION-LIST - RXN-7243
REACTION-LIST - RXN-7244
REACTION-LIST - RXN-7245
REACTION-LIST - RXN-7246
REACTION-LIST - RXN-7247
REACTION-LIST - RXN-7248
REACTION-LIST - RXN-7249
REACTION-LIST - RXN-7250
REACTION-LIST - RXN-7252
REACTION-LIST - RXN-7253
REACTION-LIST - RXN-7251
//
UNIQUE-ID - PWY-5461
TYPES - ALKALOIDS
COMMON-NAME - betanidin degradation
CITATIONS - :EV-COMP-AINF:3497824359:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |hartmut|
PREDECESSORS - (RXN-8635)
PRIMARIES - (RXN-8635 (CPD-8653) (CPD-8890))
REACTION-LAYOUT - (RXN-8635 (:LEFT-PRIMARIES CPD-8653) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8890 CPD-8653))
REACTION-LIST - RXN-8635
//
UNIQUE-ID - PWY-116
TYPES - PHENYLPROPANOID-DERIVATIVE-DEG
TYPES - LIGNIN-SYN
COMMON-NAME - coniferin metabolism
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |hartmut|
PATHWAY-LINKS - (CONIFERYL-ALCOHOL PWY-361)
PREDECESSORS - (CONIFERIN-BETA-GLUCOSIDASE-RXN 2.4.1.111-RXN)
PREDECESSORS - (2.4.1.111-RXN CONIFERIN-BETA-GLUCOSIDASE-RXN)
PRIMARIES - (CONIFERIN-BETA-GLUCOSIDASE-RXN (CPD-1777) (CONIFERYL-ALCOHOL))
PRIMARIES - (2.4.1.111-RXN (CONIFERYL-ALCOHOL) (CPD-1777))
REACTION-LAYOUT - (CONIFERIN-BETA-GLUCOSIDASE-RXN (:LEFT-PRIMARIES CPD-1777) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CONIFERYL-ALCOHOL))
REACTION-LAYOUT - (2.4.1.111-RXN (:LEFT-PRIMARIES CONIFERYL-ALCOHOL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-1777))
REACTION-LIST - CONIFERIN-BETA-GLUCOSIDASE-RXN
REACTION-LIST - 2.4.1.111-RXN
//
UNIQUE-ID - PWY-695
TYPES - Abscisic-Acid-Biosynthesis
TYPES - Carotenoid-Degradation
COMMON-NAME - abscisic acid biosynthesis
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |tissier|
PATHWAY-LINKS - (CPD1F-133 PWY-5945)
PATHWAY-LINKS - (CPD-693 PWY-5271)
PREDECESSORS - (RXN-8074 RXN1F-155)
PREDECESSORS - (1.2.3.14-RXN 1.1.1.288-RXN)
PREDECESSORS - (1.1.1.288-RXN RXN-698)
PREDECESSORS - (RXN-698 RXN-8074)
PRIMARIES - (RXN-8074 (CPD1F-135) (CPD-7424))
PRIMARIES - (RXN-698 (CPD-7424) (CPD-7279))
PRIMARIES - (1.1.1.288-RXN (CPD-7279) (CPD-692))
REACTION-LAYOUT - (RXN1F-155 (:LEFT-PRIMARIES CPD1F-133) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-135))
REACTION-LAYOUT - (RXN-8074 (:LEFT-PRIMARIES CPD1F-135) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7424))
REACTION-LAYOUT - (RXN-698 (:LEFT-PRIMARIES CPD-7424) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7279))
REACTION-LAYOUT - (1.2.3.14-RXN (:LEFT-PRIMARIES CPD-692) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-693))
REACTION-LAYOUT - (1.1.1.288-RXN (:LEFT-PRIMARIES CPD-7279) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-692))
REACTION-LIST - RXN1F-155
REACTION-LIST - RXN-8074
REACTION-LIST - RXN-698
REACTION-LIST - 1.2.3.14-RXN
REACTION-LIST - 1.1.1.288-RXN
SYNONYMS - ABA synthesis
//
UNIQUE-ID - PWY-5886
TYPES - AROMATIC-COMPOUNDS-BIOSYN
COMMON-NAME - 4-hydroxyphenylpyruvate biosynthesis
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (P-HYDROXY-PHENYLPYRUVATE PWY-5754 PWY-1422)
PREDECESSORS - (TYROSINE-AMINOTRANSFERASE-RXN)
REACTION-LAYOUT - (TYROSINE-AMINOTRANSFERASE-RXN (:LEFT-PRIMARIES TYR) (:DIRECTION :L2R) (:RIGHT-PRIMARIES P-HYDROXY-PHENYLPYRUVATE))
REACTION-LIST - TYROSINE-AMINOTRANSFERASE-RXN
//
UNIQUE-ID - PWY-5751
TYPES - PHENYLPROPANOID-SYN
TYPES - AROMATIC-COMPOUNDS-BIOSYN
COMMON-NAME - phenylethanol biosynthesis
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - O-27
CREDITS - |pujar|
PATHWAY-LINKS - (PHE PHESYN)
PREDECESSORS - (RXN-7700 RXN-8990)
PREDECESSORS - (RXN-7700 AMINEPHEN-RXN)
PREDECESSORS - (AMINEPHEN-RXN PHENYLALANINE-DECARBOXYLASE-RXN)
PRIMARIES - (RXN-8990 (PHE) NIL)
REACTION-LAYOUT - (RXN-8990 (:LEFT-PRIMARIES PHE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHENYLACETALDEHYDE))
REACTION-LAYOUT - (RXN-7700 (:LEFT-PRIMARIES PHENYLACETALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7035))
REACTION-LAYOUT - (AMINEPHEN-RXN (:LEFT-PRIMARIES PHENYLETHYLAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHENYLACETALDEHYDE))
REACTION-LAYOUT - (PHENYLALANINE-DECARBOXYLASE-RXN (:LEFT-PRIMARIES PHE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHENYLETHYLAMINE))
REACTION-LIST - RXN-8990
REACTION-LIST - RXN-7700
REACTION-LIST - AMINEPHEN-RXN
REACTION-LIST - PHENYLALANINE-DECARBOXYLASE-RXN
SYNONYMS - phenyacetaldehyde biosynthesis
SYNONYMS - phenylacetaldehyde and phenylethanol biosynthesis
//
UNIQUE-ID - PWY-5901
TYPES - AROMATIC-COMPOUNDS-BIOSYN
COMMON-NAME - 2,3-dihydroxybenzoate biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - |keseler|
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (CHORISMATE ARO-PWY)
PREDECESSORS - (ISOCHORMAT-RXN ISOCHORSYN-RXN)
PREDECESSORS - (DHBDEHYD-RXN ISOCHORMAT-RXN)
REACTION-LAYOUT - (DHBDEHYD-RXN (:LEFT-PRIMARIES DIHYDRO-DIOH-BENZOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-3-DIHYDROXYBENZOATE))
REACTION-LAYOUT - (ISOCHORMAT-RXN (:LEFT-PRIMARIES ISOCHORISMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDRO-DIOH-BENZOATE))
REACTION-LAYOUT - (ISOCHORSYN-RXN (:LEFT-PRIMARIES CHORISMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ISOCHORISMATE))
REACTION-LIST - DHBDEHYD-RXN
REACTION-LIST - ISOCHORMAT-RXN
REACTION-LIST - ISOCHORSYN-RXN
//
UNIQUE-ID - PWY-5754
TYPES - 4-Hydroxybenzoate-Biosynthesis
COMMON-NAME - 4-hydroxybenzoate biosynthesis I (eukaryotes)
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (P-HYDROXY-PHENYLPYRUVATE PWY-5886)
PATHWAY-LINKS - (CHORISMATE ARO-PWY)
PREDECESSORS - (RXN3O-1118 HYDROXYPHENYLPYRUVATE-REDUCTASE-RXN)
PREDECESSORS - (3.1.2.23-RXN RXN3O-1120)
PREDECESSORS - (RXN3O-1120 4-COUMARATE--COA-LIGASE-RXN)
PREDECESSORS - (4-COUMARATE--COA-LIGASE-RXN RXN3O-1118)
PRIMARIES - (3.1.2.23-RXN (CPD-201) (|4-hydroxybenzoate|))
PRIMARIES - (CHORPYRLY-RXN (CHORISMATE) (|4-hydroxybenzoate|))
REACTION-LAYOUT - (HYDROXYPHENYLPYRUVATE-REDUCTASE-RXN (:LEFT-PRIMARIES 4-HYDROXYPHENYLLACTATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES P-HYDROXY-PHENYLPYRUVATE))
REACTION-LAYOUT - (4-COUMARATE--COA-LIGASE-RXN (:LEFT-PRIMARIES COUMARATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES P-COUMAROYL-COA))
REACTION-LAYOUT - (3.1.2.23-RXN (:LEFT-PRIMARIES CPD-201) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |4-hydroxybenzoate|))
REACTION-LAYOUT - (RXN3O-1120 (:LEFT-PRIMARIES P-COUMAROYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-201))
REACTION-LAYOUT - (RXN3O-1118 (:LEFT-PRIMARIES 4-HYDROXYPHENYLLACTATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES COUMARATE))
REACTION-LIST - HYDROXYPHENYLPYRUVATE-REDUCTASE-RXN
REACTION-LIST - 4-COUMARATE--COA-LIGASE-RXN
REACTION-LIST - 3.1.2.23-RXN
REACTION-LIST - RXN3O-1120
REACTION-LIST - RXN3O-1118
SYNONYMS - p-hydroxybenzoate biosynthesis I (eukaryotes)
//
UNIQUE-ID - PWY-6164
TYPES - 3-Dehydroquinate-Biosynthesis
COMMON-NAME - 3-dehydroquinate biosynthesis I
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (ERYTHROSE-4P NONOXIPENT-PWY)
PATHWAY-LINKS - (CHORISMATE PWY-3462 TRPSYN-PWY FOLSYN-PWY PWY-5791)
PREDECESSORS - (DAHPSYN-RXN)
PREDECESSORS - (3-DEHYDROQUINATE-SYNTHASE-RXN DAHPSYN-RXN)
REACTION-LAYOUT - (DAHPSYN-RXN (:LEFT-PRIMARIES ERYTHROSE-4P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-DEOXY-D-ARABINO-HEPTULOSONATE-7-P))
REACTION-LAYOUT - (3-DEHYDROQUINATE-SYNTHASE-RXN (:LEFT-PRIMARIES 3-DEOXY-D-ARABINO-HEPTULOSONATE-7-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DEHYDROQUINATE))
REACTION-LIST - DAHPSYN-RXN
REACTION-LIST - 3-DEHYDROQUINATE-SYNTHASE-RXN
//
UNIQUE-ID - PWY-3261
TYPES - PLANT-CELL-STRUCTURE
TYPES - Rhamnose-Biosynthesis
COMMON-NAME - UDP-L-rhamnose biosynthesis
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |tissier|
PREDECESSORS - (RXN-5481 UDP-GLUCOSE-46-DEHYDRATASE-RXN)
PREDECESSORS - (UDP-GLUCOSE-46-DEHYDRATASE-RXN)
PRIMARIES - (RXN-5482 (UDP-GLUCOSE) (UDP-L-RHAMNOSE))
REACTION-LAYOUT - (RXN-5481 (:LEFT-PRIMARIES CPD-663) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP-L-RHAMNOSE))
REACTION-LAYOUT - (UDP-GLUCOSE-46-DEHYDRATASE-RXN (:LEFT-PRIMARIES UDP-GLUCOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-663))
REACTION-LIST - RXN-5481
REACTION-LIST - UDP-GLUCOSE-46-DEHYDRATASE-RXN
//
UNIQUE-ID - PWY-1121
TYPES - PLANT-CELL-STRUCTURE
TYPES - Metabolic-Clusters
COMMON-NAME - suberin biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
PATHWAY-LINKS - (PHE PWY-3462)
PATHWAY-LINKS - (OLEATE-CPD PWY-5147)
PREDECESSORS - (TYRAMINE-N-FERULOYLTRANSFERASE-RXN CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN)
PREDECESSORS - (TYRAMINE-N-FERULOYLTRANSFERASE-RXN 6.2.1.34-RXN)
PREDECESSORS - (TRANS-CINNAMATE-4-MONOOXYGENASE-RXN PHENYLALANINE-AMMONIA-LYASE-RXN)
PREDECESSORS - (RXN-1103 TRANS-CINNAMATE-4-MONOOXYGENASE-RXN)
PREDECESSORS - (RXN-1104 RXN-1103)
PREDECESSORS - (RXN-1126 RXN-1103)
PREDECESSORS - (CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN RXN-1126)
PREDECESSORS - (6.2.1.34-RXN RXN-1104)
PREDECESSORS - (RXN-2121 RXN-1063)
PREDECESSORS - (RXN-2122 RXN-2121)
PRIMARIES - (TYRAMINE-N-FERULOYLTRANSFERASE-RXN (FERULOYL-COA) (CPD-440))
REACTION-LAYOUT - (6.2.1.34-RXN (:LEFT-PRIMARIES FERULIC-ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FERULOYL-COA))
REACTION-LAYOUT - (RXN-2122 (:LEFT-PRIMARIES 18-OXOOLEATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OCTADEC-9-ENE-118-DIOIC-ACID))
REACTION-LAYOUT - (RXN-2121 (:LEFT-PRIMARIES 18-HYDROXYOLEATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 18-OXOOLEATE))
REACTION-LAYOUT - (RXN-1063 (:LEFT-PRIMARIES OLEATE-CPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 18-HYDROXYOLEATE))
REACTION-LAYOUT - (TYRAMINE-N-FERULOYLTRANSFERASE-RXN (:LEFT-PRIMARIES FERULOYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-440))
REACTION-LAYOUT - (RXN-1103 (:LEFT-PRIMARIES COUMARATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-676))
REACTION-LAYOUT - (CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN (:LEFT-PRIMARIES CAFFEOYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FERULOYL-COA))
REACTION-LAYOUT - (RXN-1126 (:LEFT-PRIMARIES CPD-676) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CAFFEOYL-COA))
REACTION-LAYOUT - (RXN-1104 (:LEFT-PRIMARIES CPD-676) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FERULIC-ACID))
REACTION-LAYOUT - (TRANS-CINNAMATE-4-MONOOXYGENASE-RXN (:LEFT-PRIMARIES CPD-674) (:DIRECTION :L2R) (:RIGHT-PRIMARIES COUMARATE))
REACTION-LAYOUT - (PHENYLALANINE-AMMONIA-LYASE-RXN (:LEFT-PRIMARIES PHE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-674))
REACTION-LIST - 6.2.1.34-RXN
REACTION-LIST - RXN-2122
REACTION-LIST - RXN-2121
REACTION-LIST - RXN-1063
REACTION-LIST - TYRAMINE-N-FERULOYLTRANSFERASE-RXN
REACTION-LIST - RXN-1103
REACTION-LIST - CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN
REACTION-LIST - RXN-1126
REACTION-LIST - RXN-1104
REACTION-LIST - TRANS-CINNAMATE-4-MONOOXYGENASE-RXN
REACTION-LIST - PHENYLALANINE-AMMONIA-LYASE-RXN
//
UNIQUE-ID - PWY-1001
TYPES - PRIMARY-CELL-WALL
TYPES - SECONDARY-CELL-WALL
TYPES - CARBO-BIOSYNTHESIS
COMMON-NAME - cellulose biosynthesis
CITATIONS - :EV-COMP-AINF:3497824358:liya
POLYMERIZATION-LINKS - (|1-4-beta-D-Glucan| CELLULOSE-SYNTHASE-UDP-FORMING-RXN CELLULOSE-SYNTHASE-UDP-FORMING-RXN)
PREDECESSORS - (CELLULOSE-SYNTHASE-UDP-FORMING-RXN)
PRIMARIES - (CELLULOSE-SYNTHASE-UDP-FORMING-RXN (|1-4-beta-D-Glucan|) (|1-4-beta-D-Glucan|))
REACTION-LAYOUT - (RXN-2043 (:LEFT-PRIMARIES |Long-linear-glucans|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Short-glucans| |Short-glucans|))
REACTION-LAYOUT - (CELLULOSE-SYNTHASE-UDP-FORMING-RXN (:LEFT-PRIMARIES |1-4-beta-D-Glucan|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |1-4-beta-D-Glucan|))
REACTION-LIST - RXN-2043
REACTION-LIST - CELLULOSE-SYNTHASE-UDP-FORMING-RXN
//
UNIQUE-ID - PWY-1061
TYPES - PRIMARY-CELL-WALL
TYPES - CARBO-BIOSYNTHESIS
COMMON-NAME - homogalacturonan biosynthesis
CITATIONS - :EV-COMP-AINF:3497824358:liya
PATHWAY-LINKS - (UDP-D-GALACTURONATE PWY-4861)
POLYMERIZATION-LINKS - (|1-4-alpha-D-galacturonosyl| 2.4.1.43-RXN 2.4.1.43-RXN)
PREDECESSORS - (RXN-2081 2.4.1.43-RXN)
PRIMARIES - (RXN-2081 (|1-4-alpha-D-galacturonosyl|) (|Methylesterified-homogalacturonan|))
PRIMARIES - (UDP-GLUCURONATE-4-EPIMERASE-RXN (UDP-GLUCURONATE) (UDP-D-GALACTURONATE))
REACTION-LAYOUT - (RXN-2081 (:LEFT-PRIMARIES |1-4-alpha-D-galacturonosyl|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Methylesterified-homogalacturonan|))
REACTION-LAYOUT - (2.4.1.43-RXN (:LEFT-PRIMARIES UDP-D-GALACTURONATE |1-4-alpha-D-galacturonosyl|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |1-4-alpha-D-galacturonosyl|))
REACTION-LIST - RXN-2081
REACTION-LIST - 2.4.1.43-RXN
SYNONYMS - pectin biosynthesis
//
UNIQUE-ID - PWY-282
TYPES - EPIDERMAL-STRUCTURE
TYPES - Lipid-Biosynthesis
COMMON-NAME - cuticular wax biosynthesis
CITATIONS - :EV-COMP-AINF:3497824357:liya
PATHWAY-LINKS - (VERY-LONG-CHAIN-FATTY-ACYL-COA (PWY-5080 . :INCOMING))
PREDECESSORS - (RXN-1023 RXN-1022)
PREDECESSORS - (RXN-1022 RXN-1025)
PREDECESSORS - (RXNQT-4193 RXNQT-4192)
PREDECESSORS - (RXNQT-4192)
PREDECESSORS - (RXN-1025 RXN-1021)
PRIMARIES - (RXN-1023 (|Secondary-Alcohols|) (LONG-CHAIN-KETONE))
PRIMARIES - (RXNQT-4193 (|aprimaryalcohol|) (|Wax-Esters|))
PRIMARIES - (RXNQT-4192 (VERY-LONG-CHAIN-FATTY-ACYL-COA) (|aprimaryalcohol|))
PRIMARIES - (ICOSANOYL-COA-SYNTHASE-RXN (STEAROYL-COA) (CPD-9965))
REACTION-LAYOUT - (RXNQT-4193 (:LEFT-PRIMARIES |aprimaryalcohol|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Wax-Esters|))
REACTION-LAYOUT - (RXNQT-4192 (:LEFT-PRIMARIES VERY-LONG-CHAIN-FATTY-ACYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |aprimaryalcohol|))
REACTION-LAYOUT - (RXN-1025 (:LEFT-PRIMARIES |Fatty-Aldehydes|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Alkanes|))
REACTION-LAYOUT - (RXN-1023 (:LEFT-PRIMARIES |Secondary-Alcohols|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES LONG-CHAIN-KETONE))
REACTION-LAYOUT - (RXN-1022 (:LEFT-PRIMARIES |Alkanes|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Secondary-Alcohols|))
REACTION-LAYOUT - (RXN-1021 (:LEFT-PRIMARIES |Fatty-Aldehydes|) (:DIRECTION :R2L) (:RIGHT-PRIMARIES VERY-LONG-CHAIN-FATTY-ACYL-COA))
REACTION-LIST - RXNQT-4193
REACTION-LIST - RXNQT-4192
REACTION-LIST - RXN-1025
REACTION-LIST - RXN-1023
REACTION-LIST - RXN-1022
REACTION-LIST - RXN-1021
//
UNIQUE-ID - PWY-5800
TYPES - SECONDARY-CELL-WALL
COMMON-NAME - xylan biosynthesis
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |karthik|
PATHWAY-LINKS - (UDP-D-XYLOSE PWY-4821)
POLYMERIZATION-LINKS - (14-BETA-D-XYLANS RXN-9104 RXN-9104)
PREDECESSORS - (RXN-9094 RXN-9104)
PREDECESSORS - (RXN-9093 RXN-9104)
PREDECESSORS - (RXN-9104)
PRIMARIES - (RXN-9104 (UDP-D-XYLOSE 14-BETA-D-XYLANS) (14-BETA-D-XYLANS))
PRIMARIES - (RXN-9094 (14-BETA-D-XYLANS) (GLUCURONOXYLAN-D-GLUCURONATE))
PRIMARIES - (RXN-9093 (14-BETA-D-XYLANS) (CPD-9600))
REACTION-LAYOUT - (RXN-9094 (:LEFT-PRIMARIES 14-BETA-D-XYLANS) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLUCURONOXYLAN-D-GLUCURONATE))
REACTION-LAYOUT - (RXN-9093 (:LEFT-PRIMARIES 14-BETA-D-XYLANS) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9600))
REACTION-LAYOUT - (RXN-9104 (:LEFT-PRIMARIES 14-BETA-D-XYLANS UDP-D-XYLOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 14-BETA-D-XYLANS))
REACTION-LIST - RXN-9094
REACTION-LIST - RXN-9093
REACTION-LIST - RXN-9104
//
UNIQUE-ID - PWY-361
TYPES - LIGNIN-SYN
TYPES - SECONDARY-CELL-WALL
COMMON-NAME - phenylpropanoid biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
PATHWAY-LINKS - (CONIFERYL-ALCOHOL PWY-116)
PATHWAY-LINKS - (SINAPALDEHYDE (PWY-5168 . :OUTGOING))
PATHWAY-LINKS - (CONIFERYL-ALDEHYDE PWY-83 PWY-5168)
PATHWAY-LINKS - (COUMARATE PWY1F-467)
PREDECESSORS - (CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN RXN-2622)
PREDECESSORS - (CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN RXN-2621)
PREDECESSORS - (RXN-2602 RXN-1106)
PREDECESSORS - (RXN-1125 RXN-1143)
PREDECESSORS - (RXN-1143 RXN-1142)
PREDECESSORS - (RXN-1142 RXN-1106)
PREDECESSORS - (RXN-1106 CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN)
PREDECESSORS - (RXN-1101 4-COUMARATE--COA-LIGASE-RXN)
PREDECESSORS - (RXN-1102 RXN-1101)
PREDECESSORS - (RXN-2601 4-COUMARATE--COA-LIGASE-RXN)
PREDECESSORS - (1.14.13.36-RXN RXN-2601)
PREDECESSORS - (2.3.1.133-RXN 4-COUMARATE--COA-LIGASE-RXN)
PREDECESSORS - (RXN-2581 2.3.1.133-RXN)
PREDECESSORS - (RXN-2622 1.14.13.36-RXN)
PREDECESSORS - (RXN-2621 RXN-2581)
REACTION-LAYOUT - (1.14.13.36-RXN (:LEFT-PRIMARIES 4-COUMAROYLQUINATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CAFFEOYLQUINATE))
REACTION-LAYOUT - (RXN-2622 (:LEFT-PRIMARIES CAFFEOYLQUINATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CAFFEOYL-COA))
REACTION-LAYOUT - (RXN-2621 (:LEFT-PRIMARIES CAFFEOYLSHIKIMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CAFFEOYL-COA))
REACTION-LAYOUT - (RXN-2602 (:LEFT-PRIMARIES CONIFERYL-ALCOHOL) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CONIFERYL-ALDEHYDE))
REACTION-LAYOUT - (2.3.1.133-RXN (:LEFT-PRIMARIES P-COUMAROYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-412))
REACTION-LAYOUT - (RXN-2601 (:LEFT-PRIMARIES P-COUMAROYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 4-COUMAROYLQUINATE))
REACTION-LAYOUT - (RXN-2581 (:LEFT-PRIMARIES CPD-412) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CAFFEOYLSHIKIMATE))
REACTION-LAYOUT - (RXN-1143 (:LEFT-PRIMARIES 5-HYDROXY-CONIFERALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SINAPALDEHYDE))
REACTION-LAYOUT - (RXN-1142 (:LEFT-PRIMARIES CONIFERYL-ALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-HYDROXY-CONIFERALDEHYDE))
REACTION-LAYOUT - (CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN (:LEFT-PRIMARIES CAFFEOYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FERULOYL-COA))
REACTION-LAYOUT - (RXN-1125 (:LEFT-PRIMARIES SINAPALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SINAPYL-ALCOHOL))
REACTION-LAYOUT - (RXN-1102 (:LEFT-PRIMARIES COUMARALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES COUMARYL-ALCOHOL))
REACTION-LAYOUT - (RXN-1106 (:LEFT-PRIMARIES FERULOYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CONIFERYL-ALDEHYDE))
REACTION-LAYOUT - (RXN-1101 (:LEFT-PRIMARIES P-COUMAROYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES COUMARALDEHYDE))
REACTION-LAYOUT - (4-COUMARATE--COA-LIGASE-RXN (:LEFT-PRIMARIES COUMARATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES P-COUMAROYL-COA))
REACTION-LIST - 1.14.13.36-RXN
REACTION-LIST - RXN-2622
REACTION-LIST - RXN-2621
REACTION-LIST - RXN-2602
REACTION-LIST - 2.3.1.133-RXN
REACTION-LIST - RXN-2601
REACTION-LIST - RXN-2581
REACTION-LIST - RXN-1143
REACTION-LIST - RXN-1142
REACTION-LIST - CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN
REACTION-LIST - RXN-1125
REACTION-LIST - RXN-1102
REACTION-LIST - RXN-1106
REACTION-LIST - RXN-1101
REACTION-LIST - 4-COUMARATE--COA-LIGASE-RXN
SYNONYMS - monolignol biosynthesis
SYNONYMS - lignin biosynthesis
//
UNIQUE-ID - PWY-5912
TYPES - Siderophores-Biosynthesis
COMMON-NAME - 2'-deoxymugineic acid phytosiderophore biosynthesis
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - O-27
CREDITS - |pujar|
PATHWAY-LINKS - (CPD-7227 PWY-5934)
PREDECESSORS - (1.1.1.285-RXN 2.6.1.80-RXN)
PREDECESSORS - (2.6.1.80-RXN 2.5.1.43-RXN)
PREDECESSORS - (2.5.1.43-RXN S-ADENMETSYN-RXN)
PRIMARIES - (1.1.1.285-RXN (CPD-7228) (CPD-7227))
REACTION-LAYOUT - (1.1.1.285-RXN (:LEFT-PRIMARIES CPD-7228) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7227))
REACTION-LAYOUT - (2.6.1.80-RXN (:LEFT-PRIMARIES CPD-463) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7228))
REACTION-LAYOUT - (2.5.1.43-RXN (:LEFT-PRIMARIES S-ADENOSYLMETHIONINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-463))
REACTION-LAYOUT - (S-ADENMETSYN-RXN (:LEFT-PRIMARIES MET ATP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES S-ADENOSYLMETHIONINE))
REACTION-LIST - 1.1.1.285-RXN
REACTION-LIST - 2.6.1.80-RXN
REACTION-LIST - 2.5.1.43-RXN
REACTION-LIST - S-ADENMETSYN-RXN
SYNONYMS - DMA biosynthesis
SYNONYMS - Fe acquisition
SYNONYMS - iron acquisition
SYNONYMS - strategy II Fe-acquisition
//
UNIQUE-ID - PWY-735
TYPES - FATTY-ACID-DERIVATIVE-SYN
TYPES - Jasmonates-Biosynthesis
COMMON-NAME - jasmonic acid biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |zhang|
PREDECESSORS - (RXN-745 RXN-10708)
PREDECESSORS - (RXN-10708 RXN-10701)
PREDECESSORS - (RXN-10701 RXN-10703)
PREDECESSORS - (RXN-10703 RXN-10705)
PREDECESSORS - (RXN-10705 RXN-10707)
PREDECESSORS - (RXN-10707 RXN-10700)
PREDECESSORS - (RXN-10700 RXN-10702)
PREDECESSORS - (RXN-10702 RXN-10704)
PREDECESSORS - (RXN-10704 RXN-10706)
PREDECESSORS - (RXN-10706 RXN-10699)
PREDECESSORS - (RXN-10699 RXN-10698)
PREDECESSORS - (RXN-10698 RXN-10697)
PREDECESSORS - (RXN-10697 RXN-10696)
PREDECESSORS - (RXN-10696 RXN-10695)
PREDECESSORS - (RXN-10695 12-OXOPHYTODIENOATE-REDUCTASE-RXN)
PREDECESSORS - (RXN1F-19 RXN-1321)
PREDECESSORS - (ALLENE-OXIDE-CYCLASE-RXN RXN1F-19)
PREDECESSORS - (12-OXOPHYTODIENOATE-REDUCTASE-RXN ALLENE-OXIDE-CYCLASE-RXN)
PRIMARIES - (RXN-10708 (CPD-11529) (CPD-731))
PRIMARIES - (RXN-10695 (CPD-730) (CPD-11517))
REACTION-LAYOUT - (RXN-10708 (:LEFT-PRIMARIES CPD-11529) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-731))
REACTION-LAYOUT - (RXN-10706 (:LEFT-PRIMARIES CPD-11521) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-11522))
REACTION-LAYOUT - (RXN-10707 (:LEFT-PRIMARIES CPD-11525) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-11526))
REACTION-LAYOUT - (RXN-10696 (:LEFT-PRIMARIES CPD-11517) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-11518))
REACTION-LAYOUT - (RXN-10701 (:LEFT-PRIMARIES CPD-11528) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-11529))
REACTION-LAYOUT - (RXN-10700 (:LEFT-PRIMARIES CPD-11524) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-11525))
REACTION-LAYOUT - (RXN-10699 (:LEFT-PRIMARIES CPD-11520) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-11521))
REACTION-LAYOUT - (RXN-10703 (:LEFT-PRIMARIES CPD-11527) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-11528))
REACTION-LAYOUT - (RXN-10702 (:LEFT-PRIMARIES CPD-11523) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-11524))
REACTION-LAYOUT - (RXN-10698 (:LEFT-PRIMARIES CPD-11519) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-11520))
REACTION-LAYOUT - (RXN-10705 (:LEFT-PRIMARIES CPD-11526) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-11527))
REACTION-LAYOUT - (RXN-10704 (:LEFT-PRIMARIES CPD-11522) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-11523))
REACTION-LAYOUT - (RXN-10697 (:LEFT-PRIMARIES CPD-11518) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-11519))
REACTION-LAYOUT - (RXN-10695 (:LEFT-PRIMARIES CPD-730) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-11517))
REACTION-LAYOUT - (RXN-1321 (:LEFT-PRIMARIES LINOLENIC_ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-725))
REACTION-LAYOUT - (RXN1F-19 (:LEFT-PRIMARIES CPD-725) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-728))
REACTION-LAYOUT - (12-OXOPHYTODIENOATE-REDUCTASE-RXN (:LEFT-PRIMARIES CPD-730) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CPD-729))
REACTION-LAYOUT - (ALLENE-OXIDE-CYCLASE-RXN (:LEFT-PRIMARIES CPD-728) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-729))
REACTION-LAYOUT - (RXN-745 (:LEFT-PRIMARIES CPD-731) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-734))
REACTION-LIST - RXN-10708
REACTION-LIST - RXN-10706
REACTION-LIST - RXN-10707
REACTION-LIST - RXN-10696
REACTION-LIST - RXN-10701
REACTION-LIST - RXN-10700
REACTION-LIST - RXN-10699
REACTION-LIST - RXN-10703
REACTION-LIST - RXN-10702
REACTION-LIST - RXN-10698
REACTION-LIST - RXN-10705
REACTION-LIST - RXN-10704
REACTION-LIST - RXN-10697
REACTION-LIST - RXN-10695
REACTION-LIST - RXN-1321
REACTION-LIST - RXN1F-19
REACTION-LIST - 12-OXOPHYTODIENOATE-REDUCTASE-RXN
REACTION-LIST - ALLENE-OXIDE-CYCLASE-RXN
REACTION-LIST - RXN-745
SYNONYMS - jasmonate biosynthesis
//
UNIQUE-ID - PWY-6303
TYPES - Interconversion
TYPES - Auxin-Biosynthesis
COMMON-NAME - methyl indole-3-acetate interconversion
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |dreher|
PATHWAY-LINKS - (INDOLE_ACETATE_AUXIN PWY-581)
PREDECESSORS - (RXN-9825 RXN-10711)
PREDECESSORS - (RXN-10711 RXN-9825)
PRIMARIES - (RXN-9825 (INDOLE_ACETATE_AUXIN) (CPD-10546))
REACTION-LAYOUT - (RXN-10711 (:LEFT-PRIMARIES CPD-10546) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INDOLE_ACETATE_AUXIN))
REACTION-LAYOUT - (RXN-9825 (:LEFT-PRIMARIES INDOLE_ACETATE_AUXIN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-10546))
REACTION-LIST - RXN-10711
REACTION-LIST - RXN-9825
SYNONYMS - MeIAA interconversion
SYNONYMS - Methyl IAA biosynthesis
//
UNIQUE-ID - PWY-581
TYPES - Auxin-Biosynthesis
COMMON-NAME - IAA biosynthesis I
CITATIONS - :EV-COMP-AINF:3497824356:liya
PATHWAY-LINKS - (INDOLE-3-GLYCEROL-P TRPSYN-PWY)
PREDECESSORS - (RXN-7567 RXN-1403)
PREDECESSORS - (RXNN-404 RXN-7567)
PREDECESSORS - (4.1.1.74-RXN RXN-10139)
PREDECESSORS - (TRYPTOPHAN-AMINOTRANSFERASE-RXN RXN-10139)
PREDECESSORS - (AROMATIC-L-AMINO-ACID-DECARBOXYLASE-RXN RXN-10139)
PREDECESSORS - (RXN-1402 RXN-10139)
PREDECESSORS - (RXN-1408 RXN-1407)
PREDECESSORS - (RXN-1405 AROMATIC-L-AMINO-ACID-DECARBOXYLASE-RXN)
PREDECESSORS - (RXN-1403 RXN-1406)
PREDECESSORS - (RXN-1406 RXN-1405)
PREDECESSORS - (INDOLE-3-ACETALDEHYDE-OXIDASE-RXN 4.1.1.74-RXN)
PREDECESSORS - (INDOLE-3-ACETALDEHYDE-OXIDASE-RXN RXN-1401)
PREDECESSORS - (RXN-1403 RXN-1402)
PREDECESSORS - (RXN-1404 RXN-1403)
PREDECESSORS - (RXN-1401 AROMATIC-L-AMINO-ACID-DECARBOXYLASE-RXN)
PREDECESSORS - (4.1.1.74-RXN TRYPTOPHAN-AMINOTRANSFERASE-RXN)
PRIMARIES - (RXN-10139 (TRP) (INDOLE_PYRUVATE))
PRIMARIES - (RXN-1408 (INDOLE) (INDOLE_ACETATE_AUXIN))
PRIMARIES - (RXN-1407 (INDOLE-3-GLYCEROL-P) (INDOLE))
PRIMARIES - (RXN-1403 (INDOLE-3-ACETALDOXIME) (INDOLEYL-CPD))
PRIMARIES - (RXN-1406 (N-HYDROXYL-TRYPTAMINE) (INDOLE-3-ACETALDOXIME))
PRIMARIES - (RXN-1405 (TRYPTAMINE) (N-HYDROXYL-TRYPTAMINE))
PRIMARIES - (RXN-1404 (INDOLEYL-CPD) (INDOLE_ACETATE_AUXIN))
PRIMARIES - (AROMATIC-L-AMINO-ACID-DECARBOXYLASE-RXN (TRP) (TRYPTAMINE))
PRIMARIES - (RXN-1402 (TRP) (INDOLE-3-ACETALDOXIME))
PRIMARIES - (TRYPTOPHAN-AMINOTRANSFERASE-RXN (TRP) (INDOLE_PYRUVATE))
PRIMARIES - (INDOLE-3-ACETALDEHYDE-OXIDASE-RXN (INDOLE_ACETALDEHYDE) (INDOLE_ACETATE_AUXIN))
PRIMARIES - (RXN-1401 (TRYPTAMINE) (INDOLE_ACETALDEHYDE))
PRIMARIES - (4.1.1.74-RXN (INDOLE_PYRUVATE) (INDOLE_ACETALDEHYDE))
REACTION-LAYOUT - (RXN-7567 (:LEFT-PRIMARIES INDOLEYL-CPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-237))
REACTION-LAYOUT - (RXNN-404 (:LEFT-PRIMARIES CPD-237) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INDOLE_ACETATE_AUXIN))
REACTION-LAYOUT - (RXN-10139 (:LEFT-PRIMARIES TRP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INDOLE_PYRUVATE))
REACTION-LAYOUT - (RXN-1408 (:LEFT-PRIMARIES INDOLE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INDOLE_ACETATE_AUXIN))
REACTION-LAYOUT - (RXN-1407 (:LEFT-PRIMARIES INDOLE-3-GLYCEROL-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INDOLE))
REACTION-LAYOUT - (RXN-1406 (:LEFT-PRIMARIES N-HYDROXYL-TRYPTAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INDOLE-3-ACETALDOXIME))
REACTION-LAYOUT - (RXN-1405 (:LEFT-PRIMARIES TRYPTAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES N-HYDROXYL-TRYPTAMINE))
REACTION-LAYOUT - (RXN-1404 (:LEFT-PRIMARIES INDOLEYL-CPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INDOLE_ACETATE_AUXIN))
REACTION-LAYOUT - (RXN-1403 (:LEFT-PRIMARIES INDOLE-3-ACETALDOXIME) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INDOLEYL-CPD))
REACTION-LAYOUT - (RXN-1402 (:LEFT-PRIMARIES TRP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INDOLE-3-ACETALDOXIME))
REACTION-LAYOUT - (RXN-1401 (:LEFT-PRIMARIES TRYPTAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INDOLE_ACETALDEHYDE))
REACTION-LAYOUT - (AROMATIC-L-AMINO-ACID-DECARBOXYLASE-RXN (:LEFT-PRIMARIES TRP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TRYPTAMINE))
REACTION-LAYOUT - (INDOLE-3-ACETALDEHYDE-OXIDASE-RXN (:LEFT-PRIMARIES INDOLE_ACETALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INDOLE_ACETATE_AUXIN))
REACTION-LAYOUT - (4.1.1.74-RXN (:LEFT-PRIMARIES INDOLE_PYRUVATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INDOLE_ACETALDEHYDE))
REACTION-LAYOUT - (TRYPTOPHAN-AMINOTRANSFERASE-RXN (:LEFT-PRIMARIES TRP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INDOLE_PYRUVATE))
REACTION-LIST - RXN-7567
REACTION-LIST - RXNN-404
REACTION-LIST - RXN-10139
REACTION-LIST - RXN-1408
REACTION-LIST - RXN-1407
REACTION-LIST - RXN-1406
REACTION-LIST - RXN-1405
REACTION-LIST - RXN-1404
REACTION-LIST - RXN-1403
REACTION-LIST - RXN-1402
REACTION-LIST - RXN-1401
REACTION-LIST - AROMATIC-L-AMINO-ACID-DECARBOXYLASE-RXN
REACTION-LIST - INDOLE-3-ACETALDEHYDE-OXIDASE-RXN
REACTION-LIST - 4.1.1.74-RXN
REACTION-LIST - TRYPTOPHAN-AMINOTRANSFERASE-RXN
SYNONYMS - auxin biosynthesis
SYNONYMS - indole-3-acetic acid biosynthesis
SYNONYMS - IAA de novo synthesis
//
UNIQUE-ID - PWY-5034
TYPES - GIBBERELLIN-SYN
COMMON-NAME - GA12 biosynthesis
CITATIONS - :EV-COMP-AINF:3497824357:liya
IN-PATHWAY - PWY-5053
PATHWAY-LINKS - (CPD1F-95 PWY-5035)
PATHWAY-LINKS - (CPD1F-128 PWY-5032)
PREDECESSORS - (RXN-7580 RXN-5242)
PREDECESSORS - (RXN-5242 1.14.13.78-RXN)
PREDECESSORS - (1.14.13.78-RXN)
PREDECESSORS - (RXN1F-160 1.14.13.79-RXN)
PREDECESSORS - (RXN1F-161 RXN1F-160)
PREDECESSORS - (1.14.13.79-RXN RXN-7580)
PRIMARIES - (RXN1F-161 (CPD1F-138) (CPD1F-95))
PRIMARIES - (RXN1F-160 (CPD1F-136) (CPD1F-138))
PRIMARIES - (1.14.13.79-RXN (CPD1F-132) (CPD1F-136))
PRIMARIES - (RXN-7580 (ENT-KAUR-16-EN-19-AL) (CPD1F-132))
PRIMARIES - (RXN-5242 (ENT-KAUR-16-EN-19-OL) (ENT-KAUR-16-EN-19-AL))
PRIMARIES - (1.14.13.78-RXN (CPD1F-128) (ENT-KAUR-16-EN-19-OL))
REACTION-LAYOUT - (1.14.13.79-RXN (:LEFT-PRIMARIES CPD1F-132) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-136))
REACTION-LAYOUT - (RXN1F-160 (:LEFT-PRIMARIES CPD1F-136) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-138))
REACTION-LAYOUT - (RXN1F-161 (:LEFT-PRIMARIES CPD1F-138) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-95))
REACTION-LAYOUT - (1.14.13.78-RXN (:LEFT-PRIMARIES CPD1F-128) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ENT-KAUR-16-EN-19-OL))
REACTION-LAYOUT - (RXN-5242 (:LEFT-PRIMARIES ENT-KAUR-16-EN-19-OL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ENT-KAUR-16-EN-19-AL))
REACTION-LAYOUT - (RXN-7580 (:LEFT-PRIMARIES ENT-KAUR-16-EN-19-AL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-132))
REACTION-LIST - 1.14.13.79-RXN
REACTION-LIST - RXN1F-160
REACTION-LIST - RXN1F-161
REACTION-LIST - 1.14.13.78-RXN
REACTION-LIST - RXN-5242
REACTION-LIST - RXN-7580
SUPER-PATHWAYS - PWY-5053
SYNONYMS - gibberellin A12 biosynthesis
//
UNIQUE-ID - PWY-5035
TYPES - GIBBERELLIN-SYN
COMMON-NAME - gibberellin biosynthesis III (early C-13 hydroxylation)
CITATIONS - :EV-COMP-AINF:3497824358:liya
PATHWAY-LINKS - (CPD1F-95 PWY-5034)
PREDECESSORS - (RXN1F-101 RXN1F-168)
PREDECESSORS - (RXN1F-170 RXN1F-169)
PREDECESSORS - (RXN1F-169 RXN1F-168)
PREDECESSORS - (RXN-6524 RXN1F-167)
PREDECESSORS - (RXN1F-168 RXN1F-167)
PREDECESSORS - (RXN1F-167 RXN1F-143)
PREDECESSORS - (RXN1F-143)
PRIMARIES - (RXN-6547 (CPD-6225) (CPD-6226))
PRIMARIES - (RXN-6546 (CPD1F-86) (CPD-6225))
PRIMARIES - (RXN1F-101 (CPD1F-96) (CPD1F-86))
PRIMARIES - (RXN1F-170 (CPD1F-140) (CPD1F-139))
PRIMARIES - (RXN1F-169 (CPD1F-96) (CPD1F-140))
PRIMARIES - (RXN-6524 (CPD-638) (CPD-6203))
PRIMARIES - (RXN1F-168 (CPD-638) (CPD1F-96))
PRIMARIES - (RXN1F-167 (CPD-695) (CPD-638))
PRIMARIES - (RXN1F-143 (CPD1F-95) (CPD-695))
REACTION-LAYOUT - (RXN-6524 (:LEFT-PRIMARIES CPD-638) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6203))
REACTION-LAYOUT - (RXN1F-170 (:LEFT-PRIMARIES CPD1F-140) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-139))
REACTION-LAYOUT - (RXN1F-101 (:LEFT-PRIMARIES CPD1F-96) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-86))
REACTION-LAYOUT - (RXN1F-169 (:LEFT-PRIMARIES CPD1F-96) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-140))
REACTION-LAYOUT - (RXN1F-168 (:LEFT-PRIMARIES CPD-638) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-96))
REACTION-LAYOUT - (RXN1F-143 (:LEFT-PRIMARIES CPD1F-95) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-695))
REACTION-LAYOUT - (RXN1F-167 (:LEFT-PRIMARIES CPD-695) (:DIRECTION :L2R) (:RIGHT-PRIMARIES))
REACTION-LIST - RXN-6524
REACTION-LIST - RXN1F-170
REACTION-LIST - RXN1F-101
REACTION-LIST - RXN1F-169
REACTION-LIST - RXN1F-168
REACTION-LIST - RXN1F-143
REACTION-LIST - RXN1F-167
//
UNIQUE-ID - PWY-5032
TYPES - GIBBERELLIN-SYN
COMMON-NAME - ent-kaurene biosynthesis
CITATIONS - :EV-COMP-AINF:3497824358:liya
IN-PATHWAY - PWY-5053
PATHWAY-LINKS - (GERANYLGERANYL-PP PWY-5121)
PATHWAY-LINKS - (DELTA3-ISOPENTENYL-PP NONMEVIPP-PWY)
PATHWAY-LINKS - (CPD1F-128 PWY-5034)
PREDECESSORS - (4.2.3.19-RXN 5.5.1.13-RXN)
PRIMARIES - (FARNESYLTRANSTRANSFERASE-RXN (DELTA3-ISOPENTENYL-PP FARNESYL-PP) (GERANYLGERANYL-PP))
PRIMARIES - (4.2.3.19-RXN (ENT-COPALYL-DIPHOSPHATE) (CPD1F-128))
PRIMARIES - (5.5.1.13-RXN (GERANYLGERANYL-PP) (ENT-COPALYL-DIPHOSPHATE))
REACTION-LAYOUT - (4.2.3.19-RXN (:LEFT-PRIMARIES ENT-COPALYL-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-128))
REACTION-LAYOUT - (5.5.1.13-RXN (:LEFT-PRIMARIES GERANYLGERANYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ENT-COPALYL-DIPHOSPHATE))
REACTION-LIST - 4.2.3.19-RXN
REACTION-LIST - 5.5.1.13-RXN
SUPER-PATHWAYS - PWY-5053
//
UNIQUE-ID - PWY-699
TYPES - Brassinosteroid-Biosynthesis
COMMON-NAME - brassinosteroid biosynthesis I
CITATIONS - :EV-COMP-AINF:3497824358:liya
PATHWAY-LINKS - (CPD-707 PWY-2541)
PREDECESSORS - (RXN-4241 RXN-776)
PREDECESSORS - (RXN-719 RXN-4241)
PREDECESSORS - (RXN-720 RXN-779)
PREDECESSORS - (RXN-779 RXN-778)
PREDECESSORS - (RXN-778 RXN-777)
PREDECESSORS - (RXN-777 RXN-776)
PREDECESSORS - (RXN-776 RXN-775)
PREDECESSORS - (RXN-775 RXN-774)
PREDECESSORS - (RXN-774 RXN-773)
PREDECESSORS - (RXN-773 RXN-712)
PREDECESSORS - (RXN-710 RXN-709)
PREDECESSORS - (RXN-711 RXN-710)
PREDECESSORS - (RXN-712 RXN-711)
PREDECESSORS - (RXN-713 RXN-712)
PREDECESSORS - (RXN-714 RXN-713)
PREDECESSORS - (RXN-715 RXN-714)
PREDECESSORS - (RXN-716 RXN-715)
PREDECESSORS - (RXN-717 RXN-716)
PREDECESSORS - (RXN-718 RXN-717)
PREDECESSORS - (RXN-719 RXN-718)
PREDECESSORS - (RXN-720 RXN-719)
REACTION-LAYOUT - (RXN-4241 (:LEFT-PRIMARIES CPD-720) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-719))
REACTION-LAYOUT - (RXN-779 (:LEFT-PRIMARIES CPD-724) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-634))
REACTION-LAYOUT - (RXN-778 (:LEFT-PRIMARIES CPD-723) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-724))
REACTION-LAYOUT - (RXN-777 (:LEFT-PRIMARIES CPD-720) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-723))
REACTION-LAYOUT - (RXN-776 (:LEFT-PRIMARIES CPD-717) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-720))
REACTION-LAYOUT - (RXN-775 (:LEFT-PRIMARIES CPD-715) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-717))
REACTION-LAYOUT - (RXN-774 (:LEFT-PRIMARIES CPD-712) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-715))
REACTION-LAYOUT - (RXN-773 (:LEFT-PRIMARIES CPD-710) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-712))
REACTION-LAYOUT - (RXN-720 (:LEFT-PRIMARIES CPD-634) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-697))
REACTION-LAYOUT - (RXN-719 (:LEFT-PRIMARIES CPD-719) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-634))
REACTION-LAYOUT - (RXN-718 (:LEFT-PRIMARIES CPD-718) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-719))
REACTION-LAYOUT - (RXN-717 (:LEFT-PRIMARIES CPD-716) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-718))
REACTION-LAYOUT - (RXN-716 (:LEFT-PRIMARIES CPD-714) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-716))
REACTION-LAYOUT - (RXN-715 (:LEFT-PRIMARIES CPD-713) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-714))
REACTION-LAYOUT - (RXN-714 (:LEFT-PRIMARIES CPD-711) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-713))
REACTION-LAYOUT - (RXN-713 (:LEFT-PRIMARIES CPD-710) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-711))
REACTION-LAYOUT - (RXN-712 (:LEFT-PRIMARIES CPD-709) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-710))
REACTION-LAYOUT - (RXN-711 (:LEFT-PRIMARIES CPD-698) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-709))
REACTION-LAYOUT - (RXN-710 (:LEFT-PRIMARIES CPD-708) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-698))
REACTION-LAYOUT - (RXN-709 (:LEFT-PRIMARIES CPD-707) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-708))
REACTION-LIST - RXN-4241
REACTION-LIST - RXN-779
REACTION-LIST - RXN-778
REACTION-LIST - RXN-777
REACTION-LIST - RXN-776
REACTION-LIST - RXN-775
REACTION-LIST - RXN-774
REACTION-LIST - RXN-773
REACTION-LIST - RXN-720
REACTION-LIST - RXN-719
REACTION-LIST - RXN-718
REACTION-LIST - RXN-717
REACTION-LIST - RXN-716
REACTION-LIST - RXN-715
REACTION-LIST - RXN-714
REACTION-LIST - RXN-713
REACTION-LIST - RXN-712
REACTION-LIST - RXN-711
REACTION-LIST - RXN-710
REACTION-LIST - RXN-709
SYNONYMS - brassinosteroid biosynthesis - early and late C-6 oxidation pathways
//
UNIQUE-ID - PWY-2582
TYPES - Brassinosteroid-Biosynthesis
COMMON-NAME - brassinosteroid biosynthesis II
CITATIONS - :EV-COMP-AINF:3497824358:liya
PATHWAY-LINKS - (CPD-715 PWY-699)
PATHWAY-LINKS - (CPD-707 PWY-2541)
PREDECESSORS - (RXN-4231 RXN-710)
PREDECESSORS - (RXN-4229 RXN-4231)
PREDECESSORS - (RXN-4228 RXN-4229)
PREDECESSORS - (RXN-4229 RXN-4226)
PREDECESSORS - (RXN-4226 RXN-4225)
PREDECESSORS - (RXN-4225)
PREDECESSORS - (RXN-709)
PREDECESSORS - (RXN-710 RXN-709)
PREDECESSORS - (RXN-711 RXN-710)
PREDECESSORS - (RXN-712 RXN-711)
PREDECESSORS - (RXN-773 RXN-712)
PREDECESSORS - (RXN-774 RXN-4228)
PREDECESSORS - (RXN-774 RXN-773)
PREDECESSORS - (RXN-4228 RXN-4230)
PREDECESSORS - (RXN-4230 RXN-711)
REACTION-LAYOUT - (RXN-4230 (:LEFT-PRIMARIES CPD-709) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-3946))
REACTION-LAYOUT - (RXN-4231 (:LEFT-PRIMARIES CPD-698) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-3945))
REACTION-LAYOUT - (RXN-774 (:LEFT-PRIMARIES CPD-712) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-715))
REACTION-LAYOUT - (RXN-773 (:LEFT-PRIMARIES CPD-710) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-712))
REACTION-LAYOUT - (RXN-712 (:LEFT-PRIMARIES CPD-709) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-710))
REACTION-LAYOUT - (RXN-711 (:LEFT-PRIMARIES CPD-698) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-709))
REACTION-LAYOUT - (RXN-710 (:LEFT-PRIMARIES CPD-708) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-698))
REACTION-LAYOUT - (RXN-709 (:LEFT-PRIMARIES CPD-707) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-708))
REACTION-LAYOUT - (RXN-4229 (:LEFT-PRIMARIES CPD-3945) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-3946))
REACTION-LAYOUT - (RXN-4228 (:LEFT-PRIMARIES CPD-3946) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-712))
REACTION-LAYOUT - (RXN-4226 (:LEFT-PRIMARIES CPD-3943) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-3945))
REACTION-LAYOUT - (RXN-4225 (:LEFT-PRIMARIES CPD-707) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-3943))
REACTION-LIST - RXN-4230
REACTION-LIST - RXN-4231
REACTION-LIST - RXN-774
REACTION-LIST - RXN-773
REACTION-LIST - RXN-712
REACTION-LIST - RXN-711
REACTION-LIST - RXN-710
REACTION-LIST - RXN-709
REACTION-LIST - RXN-4229
REACTION-LIST - RXN-4228
REACTION-LIST - RXN-4226
REACTION-LIST - RXN-4225
SYNONYMS - brassinosteroid biosynthesis - C-22 oxidation branch
//
UNIQUE-ID - PWY-2681
TYPES - CYTOKININ-BIOSYNTHESIS
COMMON-NAME - trans-zeatin biosynthesis
CITATIONS - :EV-COMP-AINF:3497824358:liya
PATHWAY-LINKS - (CPD-4211 PWY-922)
PATHWAY-LINKS - (CPD-4210 PWY-2902)
PREDECESSORS - (RXN-4311 RXN-4305)
PREDECESSORS - (RXN-4306 RXN-4305)
PREDECESSORS - (RXN-4305)
PREDECESSORS - (RXN-4318 RXN-4314)
PREDECESSORS - (RXN-4318 RXN-4316)
PREDECESSORS - (RXN-4317 RXN-4315)
PREDECESSORS - (RXN-4313 RXN-4311)
PREDECESSORS - (RXN-4314 RXN-4312)
PREDECESSORS - (RXN-4314 RXN-4308)
PREDECESSORS - (RXN-4306 RXN-4309)
PREDECESSORS - (RXN-4310 RXN-4304)
PREDECESSORS - (RXN-4312 RXN-4306)
PREDECESSORS - (RXN-4312 RXN-4310)
PREDECESSORS - (RXN-4308 RXN-4311)
PREDECESSORS - (RXN-4311 RXN-4309)
PREDECESSORS - (RXN-4316 RXN-4313)
PREDECESSORS - (RXN-4315 RXN-4313)
PREDECESSORS - (RXN-4303)
PREDECESSORS - (RXN-4304 RXN-4303)
PREDECESSORS - (RXN-4309 RXN-4303)
PREDECESSORS - (RXN-4307)
PREDECESSORS - (RXN-4308 RXN-4307)
PREDECESSORS - (RXN-4313 RXN-4307)
PRIMARIES - (RXN-4304 (CPD-4201) (CPD-4202))
PRIMARIES - (RXN-4306 (CPD-4203) (CPD-4204))
PRIMARIES - (RXN-4308 (CPD-4205) (CPD-4206))
PRIMARIES - (RXN-4310 (CPD-4202) (CPD-4204))
PRIMARIES - (RXN-4311 (CPD-4203) (CPD-4205))
PRIMARIES - (RXN-4309 (CPD-4201) (CPD-4203))
PRIMARIES - (RXN-4305 (CPD-4211) (CPD-4203))
PRIMARIES - (RXN-4307 (CPD-4211) (CPD-4205))
PRIMARIES - (RXN-4303 (CPD-4211) (CPD-4201))
PRIMARIES - (RXN-4318 (CPD-4208) (CPD-4210))
PRIMARIES - (RXN-4315 (CPD-4207) (CPD-4209))
REACTION-LAYOUT - (RXN-4307 (:LEFT-PRIMARIES CPD-4211) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4205))
REACTION-LAYOUT - (RXN-4305 (:LEFT-PRIMARIES CPD-4211) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4203))
REACTION-LAYOUT - (RXN-4303 (:LEFT-PRIMARIES CPD-4211) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4201))
REACTION-LAYOUT - (RXN-4318 (:LEFT-PRIMARIES CPD-4208) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4210))
REACTION-LAYOUT - (RXN-4317 (:LEFT-PRIMARIES CPD-4209) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4210))
REACTION-LAYOUT - (RXN-4315 (:LEFT-PRIMARIES CPD-4207) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4209))
REACTION-LAYOUT - (RXN-4316 (:LEFT-PRIMARIES CPD-4207) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4208))
REACTION-LAYOUT - (RXN-4313 (:LEFT-PRIMARIES CPD-4205) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4207))
REACTION-LAYOUT - (RXN-4314 (:LEFT-PRIMARIES CPD-4206) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4208))
REACTION-LAYOUT - (RXN-4311 (:LEFT-PRIMARIES CPD-4203) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4205))
REACTION-LAYOUT - (RXN-4308 (:LEFT-PRIMARIES CPD-4205) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4206))
REACTION-LAYOUT - (RXN-4312 (:LEFT-PRIMARIES CPD-4204) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4206))
REACTION-LAYOUT - (RXN-4306 (:LEFT-PRIMARIES CPD-4203) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4204))
REACTION-LAYOUT - (RXN-4310 (:LEFT-PRIMARIES CPD-4202) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4204))
REACTION-LAYOUT - (RXN-4309 (:LEFT-PRIMARIES CPD-4201) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4203))
REACTION-LAYOUT - (RXN-4304 (:LEFT-PRIMARIES CPD-4201) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4202))
REACTION-LIST - RXN-4307
REACTION-LIST - RXN-4305
REACTION-LIST - RXN-4303
REACTION-LIST - RXN-4318
REACTION-LIST - RXN-4317
REACTION-LIST - RXN-4315
REACTION-LIST - RXN-4316
REACTION-LIST - RXN-4313
REACTION-LIST - RXN-4314
REACTION-LIST - RXN-4311
REACTION-LIST - RXN-4308
REACTION-LIST - RXN-4312
REACTION-LIST - RXN-4306
REACTION-LIST - RXN-4310
REACTION-LIST - RXN-4309
REACTION-LIST - RXN-4304
SYNONYMS - trans-cytokinin biosynthesis
SYNONYMS - AMP-dependent cytokinin biosynthesis
//
UNIQUE-ID - PWY-2781
TYPES - CYTOKININ-BIOSYNTHESIS
COMMON-NAME - cis-zeatin biosynthesis
CITATIONS - :EV-COMP-AINF:3497824359:liya
PATHWAY-LINKS - (CPD-4441 PWY-2902)
PATHWAY-LINKS - (CPD-4211 PWY-922)
PREDECESSORS - (RXN-4541 RXN-4542)
PREDECESSORS - (RXN-4544 RXN-4543)
PREDECESSORS - (RXN-4543)
PREDECESSORS - (RXN-4545 RXN-4544)
PREDECESSORS - (RXN-4542 RXN-4545)
PRIMARIES - (RXN-4543 (CPD-4211) (|Prenyl-tRNAs|))
PRIMARIES - (RXN-4541 (CPD-4442) (CPD-4441))
PRIMARIES - (RXN-4542 (CPD-4443) (CPD-4442))
REACTION-LAYOUT - (RXN-4545 (:LEFT-PRIMARIES |Cis-Prenyl-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4443))
REACTION-LAYOUT - (RXN-4541 (:LEFT-PRIMARIES CPD-4442) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4441))
REACTION-LAYOUT - (RXN-4542 (:LEFT-PRIMARIES CPD-4443) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4442))
REACTION-LAYOUT - (RXN-4544 (:LEFT-PRIMARIES |Prenyl-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Cis-Prenyl-tRNAs|))
REACTION-LAYOUT - (RXN-4543 (:LEFT-PRIMARIES CPD-4211) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Prenyl-tRNAs|))
REACTION-LIST - RXN-4545
REACTION-LIST - RXN-4541
REACTION-LIST - RXN-4542
REACTION-LIST - RXN-4544
REACTION-LIST - RXN-4543
SYNONYMS - cis-cytokinins biosynthesis
SYNONYMS - tRNA-dependent cytokinin biosynthesis
//
UNIQUE-ID - PWY-2902
TYPES - CYTOKININ-BIOSYNTHESIS
TYPES - Metabolic-Clusters
COMMON-NAME - cytokinins-O-glucoside biosynthesis
CITATIONS - :EV-COMP-AINF:3497824358:liya
PATHWAY-LINKS - (CPD-4210 PWY-2681)
PATHWAY-LINKS - (CPD-4441 PWY-2781)
PREDECESSORS - (RXN-4726)
PRIMARIES - (RXN-4737 (CPD-4616) (CPD-4621))
PRIMARIES - (RXN-4726 (CPD-332) (CPD-4617))
PRIMARIES - (RXN-4723 (CPD-4210) (CPD-4614))
PRIMARIES - (RXN-4735 (CPD-4441) (CPD-4620))
REACTION-LAYOUT - (RXN-4737 (:LEFT-PRIMARIES CPD-4616) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4621))
REACTION-LAYOUT - (RXN-4735 (:LEFT-PRIMARIES CPD-4441) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4620))
REACTION-LAYOUT - (RXN-4726 (:LEFT-PRIMARIES CPD-332) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4617))
REACTION-LAYOUT - (RXN-4723 (:LEFT-PRIMARIES CPD-4210) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4614))
REACTION-LIST - RXN-4737
REACTION-LIST - RXN-4735
REACTION-LIST - RXN-4726
REACTION-LIST - RXN-4723
//
UNIQUE-ID - ETHYL-PWY
TYPES - Ethylene-Biosynthesis
COMMON-NAME - ethylene biosynthesis from methionine
CITATIONS - :EV-COMP-AINF:3497824356:liya
PATHWAY-LINKS - (MET PWY-702)
PREDECESSORS - (ETHYL-RXN 4.4.1.14-RXN)
PREDECESSORS - (4.4.1.14-RXN S-ADENMETSYN-RXN)
PRIMARIES - (ETHYL-RXN (CPD-68) (ETHYLENE-CMPD))
PRIMARIES - (4.4.1.14-RXN (S-ADENOSYLMETHIONINE) (CPD-68))
PRIMARIES - (S-ADENMETSYN-RXN (MET) (S-ADENOSYLMETHIONINE))
REACTION-LAYOUT - (ETHYL-RXN (:LEFT-PRIMARIES CPD-68) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ETHYLENE-CMPD))
REACTION-LAYOUT - (4.4.1.14-RXN (:LEFT-PRIMARIES S-ADENOSYLMETHIONINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-68))
REACTION-LAYOUT - (S-ADENMETSYN-RXN (:LEFT-PRIMARIES MET) (:DIRECTION :L2R) (:RIGHT-PRIMARIES S-ADENOSYLMETHIONINE))
REACTION-LIST - ETHYL-RXN
REACTION-LIST - 4.4.1.14-RXN
REACTION-LIST - S-ADENMETSYN-RXN
SYNONYMS - ethene biosynthesis from methionine
//
UNIQUE-ID - ARGSPECAT-PWY
TYPES - Polyamine-Biosynthesis
COMMON-NAME - spermine biosynthesis
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - |caspi|
CREDITS - SRI
CREDITS - |hying|
KEY-REACTIONS - SPERMINE-SYNTHASE-RXN
PATHWAY-LINKS - (5-METHYLTHIOADENOSINE PWY-4361)
PATHWAY-LINKS - (SPERMINE PWY-3981)
PATHWAY-LINKS - (SPERMIDINE BSUBPOLYAMSYN-PWY)
PREDECESSORS - (SPERMINE-SYNTHASE-RXN SAMDECARB-RXN)
PRIMARIES - (SPERMINE-SYNTHASE-RXN (S-ADENOSYLMETHIONINAMINE SPERMIDINE) (5-METHYLTHIOADENOSINE SPERMINE))
REACTION-LAYOUT - (SAMDECARB-RXN (:LEFT-PRIMARIES S-ADENOSYLMETHIONINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES S-ADENOSYLMETHIONINAMINE))
REACTION-LAYOUT - (SPERMINE-SYNTHASE-RXN (:LEFT-PRIMARIES S-ADENOSYLMETHIONINAMINE SPERMIDINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-METHYLTHIOADENOSINE SPERMINE))
REACTION-LIST - SAMDECARB-RXN
REACTION-LIST - SPERMINE-SYNTHASE-RXN
//
UNIQUE-ID - UDPNACETYLGALSYN-PWY
TYPES - UDP-NAc-Glucosamine-Biosynthesis
COMMON-NAME - UDP-N-acetyl-D-glucosamine biosynthesis II
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - |fulcher|
CREDITS - SRI
CREDITS - |hying|
PREDECESSORS - (NAG1P-URIDYLTRANS-RXN PHOSACETYLGLUCOSAMINEMUT-RXN)
PREDECESSORS - (PHOSACETYLGLUCOSAMINEMUT-RXN GLUCOSAMINEPNACETYLTRANS-RXN)
PREDECESSORS - (GLUCOSAMINEPNACETYLTRANS-RXN L-GLN-FRUCT-6-P-AMINOTRANS-RXN)
PREDECESSORS - (L-GLN-FRUCT-6-P-AMINOTRANS-RXN)
REACTION-LAYOUT - (NAG1P-URIDYLTRANS-RXN (:LEFT-PRIMARIES N-ACETYL-D-GLUCOSAMINE-1-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP-N-ACETYL-D-GLUCOSAMINE))
REACTION-LAYOUT - (PHOSACETYLGLUCOSAMINEMUT-RXN (:LEFT-PRIMARIES N-ACETYL-D-GLUCOSAMINE-1-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES N-ACETYL-D-GLUCOSAMINE-6-P))
REACTION-LAYOUT - (GLUCOSAMINEPNACETYLTRANS-RXN (:LEFT-PRIMARIES D-GLUCOSAMINE-6-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES N-ACETYL-D-GLUCOSAMINE-6-P))
REACTION-LAYOUT - (L-GLN-FRUCT-6-P-AMINOTRANS-RXN (:LEFT-PRIMARIES FRUCTOSE-6P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES D-GLUCOSAMINE-6-P))
REACTION-LIST - NAG1P-URIDYLTRANS-RXN
REACTION-LIST - PHOSACETYLGLUCOSAMINEMUT-RXN
REACTION-LIST - GLUCOSAMINEPNACETYLTRANS-RXN
REACTION-LIST - L-GLN-FRUCT-6-P-AMINOTRANS-RXN
SYNONYMS - UDP-N-acetylgalactosamine biosynthesis
//
UNIQUE-ID - PWY1F-353
TYPES - Betaine-Biosynthesis
COMMON-NAME - glycine betaine biosynthesis III (plants)
CITATIONS - :EV-COMP-AINF:3497824356:liya
PATHWAY-LINKS - (CHOLINE PWY-3385)
PREDECESSORS - (BADH-RXN RXN-6268)
PREDECESSORS - (RXN-6268 RXN1F-357)
REACTION-LAYOUT - (RXN-6268 (:LEFT-PRIMARIES BETAINE-ALDEHYDE-HYDRATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES BETAINE_ALDEHYDE))
REACTION-LAYOUT - (BADH-RXN (:LEFT-PRIMARIES BETAINE_ALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES BETAINE))
REACTION-LAYOUT - (RXN1F-357 (:LEFT-PRIMARIES CHOLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES BETAINE-ALDEHYDE-HYDRATE))
REACTION-LIST - RXN-6268
REACTION-LIST - BADH-RXN
REACTION-LIST - RXN1F-357
SYNONYMS - glycine betaine biosynthesis
//
UNIQUE-ID - BSUBPOLYAMSYN-PWY
TYPES - Spermidine-Biosynthesis
COMMON-NAME - spermidine biosynthesis
CREDITS - SRI
CREDITS - |caspi|
CREDITS - O-18
CREDITS - |pellegrini-toole|
PATHWAY-LINKS - (5-METHYLTHIOADENOSINE PWY-4361)
PATHWAY-LINKS - (SPERMIDINE ARGSPECAT-PWY)
PATHWAY-LINKS - (PUTRESCINE PWY-43)
PREDECESSORS - (SPERMIDINESYN-RXN SAMDECARB-RXN)
PRIMARIES - (SPERMIDINESYN-RXN (S-ADENOSYLMETHIONINAMINE PUTRESCINE) (5-METHYLTHIOADENOSINE SPERMIDINE))
REACTION-LAYOUT - (SAMDECARB-RXN (:LEFT-PRIMARIES S-ADENOSYLMETHIONINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES S-ADENOSYLMETHIONINAMINE))
REACTION-LAYOUT - (SPERMIDINESYN-RXN (:LEFT-PRIMARIES S-ADENOSYLMETHIONINAMINE PUTRESCINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-METHYLTHIOADENOSINE SPERMIDINE))
REACTION-LIST - SAMDECARB-RXN
REACTION-LIST - SPERMIDINESYN-RXN
SYNONYMS - arginine degradation to spermidine
SYNONYMS - spermidine biosynthesis
//
UNIQUE-ID - PWY-6305
TYPES - Putrescine-Biosynthesis
COMMON-NAME - putrescine biosynthesis IV
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - O-28
CREDITS - |pujar|
PATHWAY-LINKS - (PUTRESCINE BSUBPOLYAMSYN-PWY)
PREDECESSORS - (AGMATIN-RXN ARGDECARBOX-RXN)
PREDECESSORS - (ARGINASE-RXN ARGDECARBOX-RXN)
PREDECESSORS - (ARGDECARBOX-RXN)
PREDECESSORS - (ORNDECARBOX-RXN ARGINASE-RXN)
PRIMARIES - (ARGDECARBOX-RXN (ARG) (AGMATHINE))
PRIMARIES - (ARGINASE-RXN (ARG) (L-ORNITHINE))
PRIMARIES - (AGMATIN-RXN (AGMATHINE) (PUTRESCINE))
REACTION-LAYOUT - (ORNDECARBOX-RXN (:LEFT-PRIMARIES L-ORNITHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PUTRESCINE))
REACTION-LAYOUT - (AGMATIN-RXN (:LEFT-PRIMARIES AGMATHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PUTRESCINE))
REACTION-LAYOUT - (ARGINASE-RXN (:LEFT-PRIMARIES ARG) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-ORNITHINE))
REACTION-LAYOUT - (ARGDECARBOX-RXN (:LEFT-PRIMARIES ARG) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AGMATHINE))
REACTION-LIST - ORNDECARBOX-RXN
REACTION-LIST - AGMATIN-RXN
REACTION-LIST - ARGINASE-RXN
REACTION-LIST - ARGDECARBOX-RXN
SYNONYMS - putrescine biosynthesis in plants
SYNONYMS - ODC and ADC putrescine biosynthesis
//
UNIQUE-ID - PWY-43
TYPES - Putrescine-Biosynthesis
COMMON-NAME - putrescine biosynthesis II
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (PUTRESCINE BSUBPOLYAMSYN-PWY)
PREDECESSORS - (AGMATINE-DEIMINASE-RXN ARGDECARBOX-RXN)
PREDECESSORS - (N-CARBAMOYLPUTRESCINE-AMIDASE-RXN AGMATINE-DEIMINASE-RXN)
REACTION-LAYOUT - (N-CARBAMOYLPUTRESCINE-AMIDASE-RXN (:LEFT-PRIMARIES CPD-597) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PUTRESCINE))
REACTION-LAYOUT - (AGMATINE-DEIMINASE-RXN (:LEFT-PRIMARIES AGMATHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-597))
REACTION-LAYOUT - (ARGDECARBOX-RXN (:LEFT-PRIMARIES ARG) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AGMATHINE))
REACTION-LIST - N-CARBAMOYLPUTRESCINE-AMIDASE-RXN
REACTION-LIST - AGMATINE-DEIMINASE-RXN
REACTION-LIST - ARGDECARBOX-RXN
//
UNIQUE-ID - PWY-5826
TYPES - SECONDARY-METABOLITE-BIOSYNTHESIS
COMMON-NAME - hypoglycin biosynthesis
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |dreher|
HYPOTHETICAL-REACTIONS - RXN-9189
HYPOTHETICAL-REACTIONS - THREDEHYD-RXN
HYPOTHETICAL-REACTIONS - RXN-9167
HYPOTHETICAL-REACTIONS - RXN-9168
HYPOTHETICAL-REACTIONS - RXN-9169
HYPOTHETICAL-REACTIONS - RXN-9170
HYPOTHETICAL-REACTIONS - RXN-9171
HYPOTHETICAL-REACTIONS - RXN-9172
HYPOTHETICAL-REACTIONS - RXN-9173
HYPOTHETICAL-REACTIONS - RXN-9174
PREDECESSORS - (RXN-9189 RXN-9170)
PREDECESSORS - (RXN-9157 RXN-9175)
PREDECESSORS - (RXN-9175 RXN-9174)
PREDECESSORS - (RXN-9174 RXN-9173)
PREDECESSORS - (RXN-9173 RXN-9172)
PREDECESSORS - (RXN-9172 RXN-9171)
PREDECESSORS - (RXN-9171 RXN-9170)
PREDECESSORS - (RXN-9170 RXN-9169)
PREDECESSORS - (RXN-9169 RXN-9168)
PREDECESSORS - (RXN-9168 RXN-9167)
PREDECESSORS - (RXN-9167 THREDEHYD-RXN)
PRIMARIES - (RXN-9157 (CPD-9699) (CPD-9700))
REACTION-LAYOUT - (RXN-9189 (:LEFT-PRIMARIES CPD-9735) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9757))
REACTION-LAYOUT - (RXN-9157 (:LEFT-PRIMARIES CPD-9699) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9700))
REACTION-LAYOUT - (THREDEHYD-RXN (:LEFT-PRIMARIES THR) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-OXOBUTANOATE))
REACTION-LAYOUT - (RXN-9167 (:LEFT-PRIMARIES 2-OXOBUTANOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9727))
REACTION-LAYOUT - (RXN-9168 (:LEFT-PRIMARIES CPD-9727) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OXOPENTENOATE))
REACTION-LAYOUT - (RXN-9169 (:LEFT-PRIMARIES OXOPENTENOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9734))
REACTION-LAYOUT - (RXN-9170 (:LEFT-PRIMARIES CPD-9734) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9735))
REACTION-LAYOUT - (RXN-9171 (:LEFT-PRIMARIES CPD-9735) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9736))
REACTION-LAYOUT - (RXN-9172 (:LEFT-PRIMARIES CPD-9736) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9737))
REACTION-LAYOUT - (RXN-9173 (:LEFT-PRIMARIES CPD-9737) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9738))
REACTION-LAYOUT - (RXN-9174 (:LEFT-PRIMARIES CPD-9738) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9739))
REACTION-LAYOUT - (RXN-9175 (:LEFT-PRIMARIES CPD-9739) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9699))
REACTION-LIST - RXN-9189
REACTION-LIST - RXN-9157
REACTION-LIST - THREDEHYD-RXN
REACTION-LIST - RXN-9167
REACTION-LIST - RXN-9168
REACTION-LIST - RXN-9169
REACTION-LIST - RXN-9170
REACTION-LIST - RXN-9171
REACTION-LIST - RXN-9172
REACTION-LIST - RXN-9173
REACTION-LIST - RXN-9174
REACTION-LIST - RXN-9175
//
UNIQUE-ID - PWY-5410
TYPES - FATTY-ACID-DERIVATIVE-SYN
COMMON-NAME - 13-LOX and 13-HPL pathway
CITATIONS - :EV-COMP-AINF:3497824359:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |zhang|
PATHWAY-LINKS - (LINOLEIC_ACID (PWY-5995 . :INCOMING))
PREDECESSORS - (RXN-1349 HYDROHEX-RXN)
PREDECESSORS - (HYDROHEX-RXN LIPOXYGENASE-RXN)
PREDECESSORS - (RXN-1345 RXN-1321)
PREDECESSORS - (RXN-1346 RXN-1345)
PREDECESSORS - (RXN-1348 RXN-1346)
PREDECESSORS - (RXN-1347 RXN-1345)
PREDECESSORS - (RXN-1349 RXN-1345)
PRIMARIES - (RXN-1345 (CPD-725) (CIS-3-HEXENAL 12-OXO-CIS-9-DODECENOATE))
PRIMARIES - (HYDROHEX-RXN (13-HYDROPEROXYOCTADECA-911-DIENOATE) (12-OXO-CIS-9-DODECENOATE HEXANAL))
REACTION-LAYOUT - (RXN-1349 (:LEFT-PRIMARIES 12-OXO-CIS-9-DODECENOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 12-OXO-TRANS-10-DODECENOATE))
REACTION-LAYOUT - (RXN-1348 (:LEFT-PRIMARIES TRANS-2-HEXENAL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TRANS-2-HEXENOL))
REACTION-LAYOUT - (RXN-1347 (:LEFT-PRIMARIES CIS-3-HEXENAL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CIS-3-HEXENOL))
REACTION-LAYOUT - (RXN-1346 (:LEFT-PRIMARIES CIS-3-HEXENAL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TRANS-2-HEXENAL))
REACTION-LAYOUT - (RXN-1345 (:LEFT-PRIMARIES CPD-725) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CIS-3-HEXENAL 12-OXO-CIS-9-DODECENOATE))
REACTION-LAYOUT - (RXN-1321 (:LEFT-PRIMARIES LINOLENIC_ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-725))
REACTION-LAYOUT - (HYDROHEX-RXN (:LEFT-PRIMARIES 13-HYDROPEROXYOCTADECA-911-DIENOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HEXANAL 12-OXO-CIS-9-DODECENOATE))
REACTION-LAYOUT - (LIPOXYGENASE-RXN (:LEFT-PRIMARIES LINOLEIC_ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 13-HYDROPEROXYOCTADECA-911-DIENOATE))
REACTION-LIST - RXN-1349
REACTION-LIST - RXN-1348
REACTION-LIST - RXN-1347
REACTION-LIST - RXN-1346
REACTION-LIST - RXN-1345
REACTION-LIST - RXN-1321
REACTION-LIST - HYDROHEX-RXN
REACTION-LIST - LIPOXYGENASE-RXN
SYNONYMS - 13-lipoxygenase and 13-hydroperoxide lyase pathway
//
UNIQUE-ID - PWY-5409
TYPES - Divinyl-Ether-Biosynthesis
COMMON-NAME - divinyl ether biosynthesis II (13-LOX)
CITATIONS - :EV-COMP-AINF:3497824359:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |zhang|
PATHWAY-LINKS - (LINOLEIC_ACID PWY-5995)
PREDECESSORS - (RXN-8504 LIPOXYGENASE-RXN)
REACTION-LAYOUT - (LIPOXYGENASE-RXN (:LEFT-PRIMARIES LINOLEIC_ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 13-HYDROPEROXYOCTADECA-911-DIENOATE))
REACTION-LAYOUT - (RXN-8504 (:LEFT-PRIMARIES 13-HYDROPEROXYOCTADECA-911-DIENOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8690))
REACTION-LIST - LIPOXYGENASE-RXN
REACTION-LIST - RXN-8504
//
UNIQUE-ID - PWY-5168
TYPES - CINNAMATE-SYN
COMMON-NAME - ferulate and sinapate biosynthesis
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |hartmut|
PATHWAY-LINKS - (SINAPALDEHYDE (PWY-361 . :OUTGOING))
PATHWAY-LINKS - (CONIFERYL-ALDEHYDE PWY-361)
PREDECESSORS - (RXN-1241)
PREDECESSORS - (RXN-8014 RXN-1143)
PREDECESSORS - (RXN-1142)
PREDECESSORS - (RXN-1143 RXN-1142)
PRIMARIES - (RXN-1143 (5-HYDROXY-CONIFERALDEHYDE) (SINAPALDEHYDE))
PRIMARIES - (RXN-1142 (CONIFERYL-ALDEHYDE) (5-HYDROXY-CONIFERALDEHYDE))
PRIMARIES - (RXN-1241 (CONIFERYL-ALDEHYDE) (FERULIC-ACID))
REACTION-LAYOUT - (RXN-8014 (:LEFT-PRIMARIES SINAPALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SINAPATE))
REACTION-LAYOUT - (RXN-1143 (:LEFT-PRIMARIES 5-HYDROXY-CONIFERALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SINAPALDEHYDE))
REACTION-LAYOUT - (RXN-1142 (:LEFT-PRIMARIES CONIFERYL-ALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-HYDROXY-CONIFERALDEHYDE))
REACTION-LAYOUT - (RXN-1241 (:LEFT-PRIMARIES CONIFERYL-ALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FERULIC-ACID))
REACTION-LIST - RXN-8014
REACTION-LIST - RXN-1143
REACTION-LIST - RXN-1142
REACTION-LIST - RXN-1241
//
UNIQUE-ID - PWY-2181
TYPES - CINNAMATE-SYN
COMMON-NAME - free phenylpropanoid acid biosynthesis
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |hartmut|
PATHWAY-LINKS - (CAFFEATE PWY-5349)
PATHWAY-LINKS - (CPD-674 PWY-361 PWY1F-467)
PATHWAY-LINKS - (COUMARATE PWY1F-467 PWY1F-FLAVSYN)
PREDECESSORS - (RXN-1104 RXN-1103)
PREDECESSORS - (RXN-1121 RXN-1104)
PREDECESSORS - (RXN-3422 RXN-1121)
REACTION-LAYOUT - (RXN-3422 (:LEFT-PRIMARIES 5-HYDROXY-FERULIC-ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SINAPATE))
REACTION-LAYOUT - (RXN-1121 (:LEFT-PRIMARIES FERULIC-ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-HYDROXY-FERULIC-ACID))
REACTION-LAYOUT - (RXN-1104 (:LEFT-PRIMARIES CPD-676) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FERULIC-ACID))
REACTION-LAYOUT - (RXN-1103 (:LEFT-PRIMARIES COUMARATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-676))
REACTION-LIST - RXN-3422
REACTION-LIST - RXN-1121
REACTION-LIST - RXN-1104
REACTION-LIST - RXN-1103
//
UNIQUE-ID - PWY-6040
TYPES - CINNAMATE-SYN
COMMON-NAME - chlorogenic acid biosynthesis II
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - O-28
CREDITS - |pujar|
PREDECESSORS - (1.14.13.36-RXN RXN-2601)
PREDECESSORS - (RXN-2581 2.3.1.133-RXN)
PRIMARIES - (RXN-2601 (P-COUMAROYL-COA) (4-COUMAROYLQUINATE))
PRIMARIES - (2.3.1.133-RXN (P-COUMAROYL-COA) (CPD-412))
PRIMARIES - (1.14.13.36-RXN (4-COUMAROYLQUINATE) (CAFFEOYLQUINATE))
REACTION-LAYOUT - (1.14.13.36-RXN (:LEFT-PRIMARIES 4-COUMAROYLQUINATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CAFFEOYLQUINATE))
REACTION-LAYOUT - (RXN-2601 (:LEFT-PRIMARIES P-COUMAROYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 4-COUMAROYLQUINATE))
REACTION-LAYOUT - (2.3.1.133-RXN (:LEFT-PRIMARIES P-COUMAROYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-412))
REACTION-LAYOUT - (RXN-2581 (:LEFT-PRIMARIES CPD-412) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CAFFEOYLSHIKIMATE))
REACTION-LIST - 1.14.13.36-RXN
REACTION-LIST - RXN-2601
REACTION-LIST - 2.3.1.133-RXN
REACTION-LIST - RXN-2581
//
UNIQUE-ID - PWY-5049
TYPES - CINNAMATE-SYN
COMMON-NAME - rosmarinic acid biosynthesis II
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |hartmut|
PREDECESSORS - (RXN-7633 RXN-7632)
PREDECESSORS - (RXN-7632 2.6.1.49-RXN)
PREDECESSORS - (2.6.1.49-RXN TYROSINE-3-MONOOXYGENASE-RXN)
PREDECESSORS - (TYROSINE-3-MONOOXYGENASE-RXN)
PRIMARIES - (RXN-7633 (CPD-6982) (CPD-6981))
PRIMARIES - (RXN-7632 (34-DIHYDROXYPHENYLPYRUVATE) (CPD-6982))
PRIMARIES - (2.6.1.49-RXN (L-DIHYDROXY-PHENYLALANINE) (34-DIHYDROXYPHENYLPYRUVATE))
PRIMARIES - (TYROSINE-3-MONOOXYGENASE-RXN (TYR) (L-DIHYDROXY-PHENYLALANINE))
REACTION-LAYOUT - (RXN-7633 (:LEFT-PRIMARIES CPD-6982) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6981))
REACTION-LAYOUT - (RXN-7632 (:LEFT-PRIMARIES 34-DIHYDROXYPHENYLPYRUVATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6982))
REACTION-LAYOUT - (2.6.1.49-RXN (:LEFT-PRIMARIES L-DIHYDROXY-PHENYLALANINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 34-DIHYDROXYPHENYLPYRUVATE))
REACTION-LAYOUT - (TYROSINE-3-MONOOXYGENASE-RXN (:LEFT-PRIMARIES TYR) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-DIHYDROXY-PHENYLALANINE))
REACTION-LIST - RXN-7633
REACTION-LIST - RXN-7632
REACTION-LIST - 2.6.1.49-RXN
REACTION-LIST - TYROSINE-3-MONOOXYGENASE-RXN
//
UNIQUE-ID - PWY-6039
TYPES - CINNAMATE-SYN
COMMON-NAME - chlorogenic acid biosynthesis I
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - O-28
CREDITS - |pujar|
PATHWAY-LINKS - (P-COUMAROYL-COA (PWY1F-467 . :INCOMING))
PREDECESSORS - (CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN RXN-2622)
PREDECESSORS - (CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN RXN-2621)
PREDECESSORS - (RXN-2622 1.14.13.36-RXN)
PREDECESSORS - (1.14.13.36-RXN RXN-2601)
PREDECESSORS - (2.3.1.133-RXN RXN-2601)
PREDECESSORS - (RXN-2621 RXN-2581)
PREDECESSORS - (RXN-2581 2.3.1.133-RXN)
PRIMARIES - (2.3.1.133-RXN (P-COUMAROYL-COA) (CPD-412))
PRIMARIES - (RXN-2601 (P-COUMAROYL-COA) (4-COUMAROYLQUINATE))
REACTION-LAYOUT - (1.14.13.36-RXN (:LEFT-PRIMARIES 4-COUMAROYLQUINATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CAFFEOYLQUINATE))
REACTION-LAYOUT - (CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN (:LEFT-PRIMARIES CAFFEOYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FERULOYL-COA))
REACTION-LAYOUT - (RXN-2622 (:LEFT-PRIMARIES CAFFEOYLQUINATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CAFFEOYL-COA))
REACTION-LAYOUT - (RXN-2601 (:LEFT-PRIMARIES P-COUMAROYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 4-COUMAROYLQUINATE))
REACTION-LAYOUT - (RXN-2621 (:LEFT-PRIMARIES CAFFEOYLSHIKIMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CAFFEOYL-COA))
REACTION-LAYOUT - (RXN-2581 (:LEFT-PRIMARIES CPD-412) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CAFFEOYLSHIKIMATE))
REACTION-LAYOUT - (2.3.1.133-RXN (:LEFT-PRIMARIES P-COUMAROYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-412))
REACTION-LIST - 1.14.13.36-RXN
REACTION-LIST - CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN
REACTION-LIST - RXN-2622
REACTION-LIST - RXN-2601
REACTION-LIST - RXN-2621
REACTION-LIST - RXN-2581
REACTION-LIST - 2.3.1.133-RXN
//
UNIQUE-ID - PWY1F-467
TYPES - CINNAMATE-SYN
COMMON-NAME - phenylpropanoid biosynthesis, initial reactions
CITATIONS - :EV-COMP-AINF:3497824356:liya
PATHWAY-LINKS - (CPD-674 PWY-5176)
PATHWAY-LINKS - (PHE PWY-3462)
PATHWAY-LINKS - (COUMARATE PWY1F-FLAVSYN PWY-361 PWY-2181)
PREDECESSORS - (TRANS-CINNAMATE-4-MONOOXYGENASE-RXN PHENYLALANINE-AMMONIA-LYASE-RXN)
PREDECESSORS - (PHENYLALANINE-AMMONIA-LYASE-RXN)
REACTION-LAYOUT - (TRANS-CINNAMATE-4-MONOOXYGENASE-RXN (:LEFT-PRIMARIES CPD-674) (:DIRECTION :L2R) (:RIGHT-PRIMARIES COUMARATE))
REACTION-LAYOUT - (PHENYLALANINE-AMMONIA-LYASE-RXN (:LEFT-PRIMARIES PHE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-674))
REACTION-LIST - TRANS-CINNAMATE-4-MONOOXYGENASE-RXN
REACTION-LIST - PHENYLALANINE-AMMONIA-LYASE-RXN
//
UNIQUE-ID - PWY1F-FLAVSYN
TYPES - FLAVONOID-SYN
TYPES - CHALCONE-SYN
COMMON-NAME - flavonoid biosynthesis
CITATIONS - :EV-COMP-AINF:3497824357:liya
PATHWAY-LINKS - (COUMARATE PWY1F-467)
PATHWAY-LINKS - (NARINGENIN-CMPD PWY-5060)
PATHWAY-LINKS - (DIHYDROKAEMPFEROL-CMPD PWY-3101 PWY1F-823)
PREDECESSORS - (NARINGENIN-3-DIOXYGENASE-RXN APIGNAR-RXN)
PREDECESSORS - (APIGNAR-RXN NARINGENIN-CHALCONE-SYNTHASE-RXN)
PREDECESSORS - (NARINGENIN-CHALCONE-SYNTHASE-RXN 4-COUMARATE--COA-LIGASE-RXN)
PREDECESSORS - (4-COUMARATE--COA-LIGASE-RXN)
PREDECESSORS - (RXN-3142 4-COUMARATE--COA-LIGASE-RXN)
PRIMARIES - (NARINGENIN-3-DIOXYGENASE-RXN (NARINGENIN-CMPD) (DIHYDROKAEMPFEROL-CMPD))
PRIMARIES - (RXN1F-461 (CPD1F-90) (CPD1F-453))
PRIMARIES - (RXN-1541 (NARINGENIN-CMPD) (ISOFLAVONE))
PRIMARIES - (RXN1F-462 (CPD-520) (CPD1F-437))
REACTION-LAYOUT - (RXN-3142 (:LEFT-PRIMARIES P-COUMAROYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-3041))
REACTION-LAYOUT - (NARINGENIN-3-DIOXYGENASE-RXN (:LEFT-PRIMARIES NARINGENIN-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROKAEMPFEROL-CMPD))
REACTION-LAYOUT - (APIGNAR-RXN (:LEFT-PRIMARIES APIGENIN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NARINGENIN-CMPD))
REACTION-LAYOUT - (NARINGENIN-CHALCONE-SYNTHASE-RXN (:LEFT-PRIMARIES P-COUMAROYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES APIGENIN))
REACTION-LAYOUT - (4-COUMARATE--COA-LIGASE-RXN (:LEFT-PRIMARIES COUMARATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES P-COUMAROYL-COA))
REACTION-LIST - RXN-3142
REACTION-LIST - NARINGENIN-3-DIOXYGENASE-RXN
REACTION-LIST - APIGNAR-RXN
REACTION-LIST - NARINGENIN-CHALCONE-SYNTHASE-RXN
REACTION-LIST - 4-COUMARATE--COA-LIGASE-RXN
SYNONYMS - flavonoid biosynthesis
//
UNIQUE-ID - PWY-6029
TYPES - FLAVONOID-SYN
COMMON-NAME - 2,3-trans-flavanols biosynthesis
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |karthik|
PATHWAY-LINKS - (CPD-7088 PWY-5153 PWY-5152)
PATHWAY-LINKS - (CPD-590 PWY-5125 PWY1F-823)
PATHWAY-LINKS - (LEUCOPELARGONIDIN-CMPD PWY-5125 PWY1F-823)
PREDECESSORS - (RXN-1484)
PREDECESSORS - (RXN-9720)
PREDECESSORS - (RXN-1481)
PRIMARIES - (RXN-9720 (CPD-7088) (CPD-10358))
PRIMARIES - (RXN-1481 (LEUCOPELARGONIDIN-CMPD) (CPD-1962))
PRIMARIES - (RXN-1484 (CPD-590) (CPD-1961))
REACTION-LAYOUT - (RXN-1481 (:LEFT-PRIMARIES CPD-1962) (:DIRECTION :R2L) (:RIGHT-PRIMARIES LEUCOPELARGONIDIN-CMPD))
REACTION-LAYOUT - (RXN-1484 (:LEFT-PRIMARIES CPD-1961) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CPD-590))
REACTION-LAYOUT - (RXN-9720 (:LEFT-PRIMARIES CPD-10358) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CPD-7088))
REACTION-LIST - RXN-1481
REACTION-LIST - RXN-1484
REACTION-LIST - RXN-9720
SYNONYMS - flavan-3-ols biosynthesis
//
UNIQUE-ID - PWY-5125
TYPES - ANTHOCYANIN-SYN
COMMON-NAME - anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside)
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |hartmut|
PATHWAY-LINKS - (PELARGONIDIN-3-GLUCOSIDE-CMPD PWY-5139)
PATHWAY-LINKS - (CPD-7088 PWY1F-823)
PATHWAY-LINKS - (LEUCOPELARGONIDIN-CMPD PWY1F-823)
PATHWAY-LINKS - (CPD-590 PWY1F-823)
PREDECESSORS - (1.14.11.19-RXN)
PREDECESSORS - (RXN1F-775 RXN-602)
PREDECESSORS - (RXN-602)
PREDECESSORS - (PELUDP-RXN LEUCPEL-RXN)
PREDECESSORS - (LEUCPEL-RXN)
PRIMARIES - (1.14.11.19-RXN (CPD-590) (|Dihydroquercetins| "cis- and trans-dihydroquercetins"))
PRIMARIES - (RXN-7815 (CPD-7090) (CPD-7117))
PRIMARIES - (RXN-7785 (CPD-7088) (CPD-7090))
PRIMARIES - (RXN1F-775 (CPD-591) (CPD1F-766))
PRIMARIES - (RXN-602 (CPD-590) (CPD-591))
PRIMARIES - (PELUDP-RXN (PELARGONIDIN-CMPD) (PELARGONIDIN-3-GLUCOSIDE-CMPD))
PRIMARIES - (LEUCPEL-RXN (LEUCOPELARGONIDIN-CMPD) (PELARGONIDIN-CMPD))
REACTION-LAYOUT - (1.14.11.19-RXN (:LEFT-PRIMARIES CPD-590) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Dihydroquercetins|))
REACTION-LAYOUT - (RXN1F-775 (:LEFT-PRIMARIES CPD-591) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-766))
REACTION-LAYOUT - (RXN-602 (:LEFT-PRIMARIES CPD-590) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-591))
REACTION-LAYOUT - (PELUDP-RXN (:LEFT-PRIMARIES PELARGONIDIN-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PELARGONIDIN-3-GLUCOSIDE-CMPD))
REACTION-LAYOUT - (LEUCPEL-RXN (:LEFT-PRIMARIES LEUCOPELARGONIDIN-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PELARGONIDIN-CMPD))
REACTION-LIST - 1.14.11.19-RXN
REACTION-LIST - RXN1F-775
REACTION-LIST - RXN-602
REACTION-LIST - PELUDP-RXN
REACTION-LIST - LEUCPEL-RXN
//
UNIQUE-ID - PWY-5139
TYPES - ANTHOCYANIN-SYN
COMMON-NAME - pelargonidin conjugates biosynthesis
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |hartmut|
PATHWAY-LINKS - (PELARGONIDIN-3-GLUCOSIDE-CMPD PWY-5125)
PREDECESSORS - (RXN-7998)
PREDECESSORS - (RXN-7997)
PREDECESSORS - (RXN-7834)
PREDECESSORS - (RXN-7828)
PREDECESSORS - (RXN-7832 RXN-7830)
PREDECESSORS - (RXN-7830)
PRIMARIES - (RXN-7997 (PELARGONIDIN-3-GLUCOSIDE-CMPD) (CPD-7383))
PRIMARIES - (RXN-7998 (PELARGONIDIN-3-GLUCOSIDE-CMPD) (CPD-7384))
PRIMARIES - (RXN-7843 (CPD-7137) (CPD-7151))
PRIMARIES - (RXN-7842 (CPD-7137) (CPD-7150))
PRIMARIES - (RXN-7832 (CPD-7144) (CPD-7148))
PRIMARIES - (RXN-7828 (PELARGONIDIN-3-GLUCOSIDE-CMPD) (CPD-7137))
PRIMARIES - (RXN-7834 (PELARGONIDIN-3-GLUCOSIDE-CMPD) (CPD-7149))
PRIMARIES - (RXN-7830 (PELARGONIDIN-3-GLUCOSIDE-CMPD) (CPD-7144))
REACTION-LAYOUT - (RXN-7998 (:LEFT-PRIMARIES PELARGONIDIN-3-GLUCOSIDE-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7384))
REACTION-LAYOUT - (RXN-7997 (:LEFT-PRIMARIES PELARGONIDIN-3-GLUCOSIDE-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7383))
REACTION-LAYOUT - (RXN-7832 (:LEFT-PRIMARIES CPD-7144) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7148))
REACTION-LAYOUT - (RXN-7834 (:LEFT-PRIMARIES PELARGONIDIN-3-GLUCOSIDE-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7149))
REACTION-LAYOUT - (RXN-7830 (:LEFT-PRIMARIES PELARGONIDIN-3-GLUCOSIDE-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7144))
REACTION-LAYOUT - (RXN-7828 (:LEFT-PRIMARIES PELARGONIDIN-3-GLUCOSIDE-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7137))
REACTION-LIST - RXN-7998
REACTION-LIST - RXN-7997
REACTION-LIST - RXN-7832
REACTION-LIST - RXN-7834
REACTION-LIST - RXN-7830
REACTION-LIST - RXN-7828
//
UNIQUE-ID - PWY-5295
TYPES - ANTHOCYANIN-SYN
COMMON-NAME - ternatin C5 biosynthesis
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - SRI
CREDITS - |caspi|
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |hartmut|
PATHWAY-LINKS - (CPD-7117 PWY-5153)
PREDECESSORS - (RXN-8209 RXN-8208)
PREDECESSORS - (RXN-8208 RXN-8206)
PREDECESSORS - (RXN-8206)
PRIMARIES - (RXN-8209 (CPD-7870) (CPD-7864))
PRIMARIES - (RXN-8208 (CPD-7862) (CPD-7870))
PRIMARIES - (RXN-8206 (CPD-7117) (CPD-7862))
REACTION-LAYOUT - (RXN-8209 (:LEFT-PRIMARIES CPD-7870) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7864))
REACTION-LAYOUT - (RXN-8208 (:LEFT-PRIMARIES CPD-7862) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7870))
REACTION-LAYOUT - (RXN-8206 (:LEFT-PRIMARIES CPD-7117) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7862))
REACTION-LIST - RXN-8209
REACTION-LIST - RXN-8208
REACTION-LIST - RXN-8206
//
UNIQUE-ID - PWY-5153
TYPES - ANTHOCYANIN-SYN
COMMON-NAME - anthocyanin biosynthesis (delphinidin 3-O-glucoside)
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |hartmut|
PATHWAY-LINKS - (CPD-7117 PWY-5295)
PATHWAY-LINKS - (CPD-7088 PWY-5152)
PREDECESSORS - (RXN-7785)
PREDECESSORS - (RXN-7815 RXN-7785)
PRIMARIES - (RXN-7815 (CPD-7090) (CPD-7117))
PRIMARIES - (RXN-7785 (CPD-7088) (CPD-7090))
REACTION-LAYOUT - (RXN-7785 (:LEFT-PRIMARIES CPD-7088) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7090))
REACTION-LAYOUT - (RXN-7815 (:LEFT-PRIMARIES CPD-7090) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7117))
REACTION-LIST - RXN-7785
REACTION-LIST - RXN-7815
//
UNIQUE-ID - PWY1F-823
TYPES - LEUCOANTHOCYANIDIN-SYN
COMMON-NAME - leucopelargonidin and leucocyanidin biosynthesis
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |hartmut|
PATHWAY-LINKS - (CPD-7088 PWY-5125)
PATHWAY-LINKS - (CPD-590 PWY-5125)
PATHWAY-LINKS - (LEUCOPELARGONIDIN-CMPD PWY-5125)
PATHWAY-LINKS - (DIHYDROKAEMPFEROL-CMPD PWY-5152 PWY1F-FLAVSYN)
PATHWAY-LINKS - (CPD-6994 PWY-5152 PWY-5060)
PATHWAY-LINKS - (NARINGENIN-CMPD PWY1F-FLAVSYN)
PREDECESSORS - (DIHYDROKAEMPFEROL-4-REDUCTASE-RXN)
PREDECESSORS - (RXN-600 RXN-525)
PREDECESSORS - (RXN-600 RXN-7775)
PRIMARIES - (RXN-525 (DIHYDROKAEMPFEROL-CMPD) (CPD-474))
PRIMARIES - (RXN-7782 (DIHYDROKAEMPFEROL-CMPD) (CPD-7087))
PRIMARIES - (DIHYDROKAEMPFEROL-4-REDUCTASE-RXN (DIHYDROKAEMPFEROL-CMPD) (LEUCOPELARGONIDIN-CMPD))
PRIMARIES - (RXN-7784 (CPD-7087) (CPD-7088))
PRIMARIES - (RXN-7783 (CPD-474) (CPD-7087))
PRIMARIES - (LEUCPEL-RXN (LEUCOPELARGONIDIN-CMPD) (PELARGONIDIN-CMPD))
PRIMARIES - (RXN-7775 (CPD-6994) (CPD-474))
PRIMARIES - (NARINGENIN-3-DIOXYGENASE-RXN (NARINGENIN-CMPD) (DIHYDROKAEMPFEROL-CMPD))
PRIMARIES - (RXN1F-775 (CPD-591) (CPD1F-766))
PRIMARIES - (PELUDP-RXN (PELARGONIDIN-CMPD) (PELARGONIDIN-3-GLUCOSIDE-CMPD))
REACTION-LAYOUT - (RXN-7775 (:LEFT-PRIMARIES CPD-6994) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-474))
REACTION-LAYOUT - (RXN-525 (:LEFT-PRIMARIES DIHYDROKAEMPFEROL-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-474))
REACTION-LAYOUT - (DIHYDROKAEMPFEROL-4-REDUCTASE-RXN (:LEFT-PRIMARIES DIHYDROKAEMPFEROL-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES LEUCOPELARGONIDIN-CMPD))
REACTION-LAYOUT - (RXN-600 (:LEFT-PRIMARIES CPD-474) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-590))
REACTION-LIST - RXN-7775
REACTION-LIST - RXN-525
REACTION-LIST - DIHYDROKAEMPFEROL-4-REDUCTASE-RXN
REACTION-LIST - RXN-600
//
UNIQUE-ID - PWY-5152
TYPES - LEUCOANTHOCYANIDIN-SYN
COMMON-NAME - leucodelphinidin biosynthesis
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |hartmut|
PATHWAY-LINKS - (CPD-7088 PWY-5153)
PATHWAY-LINKS - (DIHYDROKAEMPFEROL-CMPD PWY1F-FLAVSYN PWY1F-823)
PATHWAY-LINKS - (CPD-6994 PWY-5060 PWY1F-823)
PREDECESSORS - (RXN-7921)
PREDECESSORS - (RXN-7775)
PREDECESSORS - (RXN-7922 RXN-7921)
PREDECESSORS - (RXN-7784 RXN-7922)
PREDECESSORS - (RXN-7784 RXN-7782)
PRIMARIES - (RXN-7782 (DIHYDROKAEMPFEROL-CMPD) (CPD-7087))
PRIMARIES - (RXN-525 (DIHYDROKAEMPFEROL-CMPD) (CPD-474))
PRIMARIES - (RXN-7784 (CPD-7087) (CPD-7088))
PRIMARIES - (RXN-7922 (CPD-7214) (CPD-7087))
PRIMARIES - (RXN-7921 (CPD-6994) (CPD-7214))
PRIMARIES - (RXN-7775 (CPD-6994) (CPD-474))
REACTION-LAYOUT - (RXN-7782 (:LEFT-PRIMARIES DIHYDROKAEMPFEROL-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7087))
REACTION-LAYOUT - (RXN-525 (:LEFT-PRIMARIES DIHYDROKAEMPFEROL-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-474))
REACTION-LAYOUT - (RXN-7784 (:LEFT-PRIMARIES CPD-7087) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7088))
REACTION-LAYOUT - (RXN-7922 (:LEFT-PRIMARIES CPD-7214) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7087))
REACTION-LAYOUT - (RXN-7775 (:LEFT-PRIMARIES CPD-6994) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-474))
REACTION-LAYOUT - (RXN-7921 (:LEFT-PRIMARIES CPD-6994) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7214))
REACTION-LIST - RXN-7782
REACTION-LIST - RXN-525
REACTION-LIST - RXN-7784
REACTION-LIST - RXN-7922
REACTION-LIST - RXN-7775
REACTION-LIST - RXN-7921
//
UNIQUE-ID - PWY-6199
TYPES - FLAVONOL-SYN
COMMON-NAME - quercetinsulphates biosynthesis
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |karthik|
PATHWAY-LINKS - (CPD-520 PWY-6064 PWY-3101)
PREDECESSORS - (RXN-10244 RXN-10138)
PREDECESSORS - (RXN-10138 RXN-8262)
PREDECESSORS - (RXN-8262)
PREDECESSORS - (RXN-10132 2.8.2.28-RXN)
PREDECESSORS - (RXN-10131 RXN-10130)
PREDECESSORS - (RXN-10130 2.8.2.27-RXN)
PREDECESSORS - (2.8.2.28-RXN 2.8.2.26-RXN)
PREDECESSORS - (2.8.2.27-RXN FLAVONOL-3-SULFOTRANSFERASE-RXN)
PREDECESSORS - (2.8.2.26-RXN FLAVONOL-3-SULFOTRANSFERASE-RXN)
PREDECESSORS - (FLAVONOL-3-SULFOTRANSFERASE-RXN)
PRIMARIES - (RXN-10244 (CPD-10900) (CPD-11018))
PRIMARIES - (RXN-10138 (CPD-8004) (CPD-10900))
PRIMARIES - (RXN-10132 (QUERCETIN-337-TRISSULFATE) (CPD-10894))
PRIMARIES - (RXN-10131 (CPD-10893) (CPD-10894))
PRIMARIES - (RXN-10130 (QUERCETIN-34-BISSULFATE) (CPD-10893))
PRIMARIES - (2.8.2.28-RXN (QUERCETIN-33-BISSULFATE) (QUERCETIN-337-TRISSULFATE))
PRIMARIES - (2.8.2.26-RXN (CPD-1822) (QUERCETIN-33-BISSULFATE))
PRIMARIES - (2.8.2.27-RXN (CPD-1822) (QUERCETIN-34-BISSULFATE))
PRIMARIES - (FLAVONOL-3-SULFOTRANSFERASE-RXN (CPD-520) (CPD-1822))
REACTION-LAYOUT - (RXN-10244 (:LEFT-PRIMARIES CPD-10900) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-11018))
REACTION-LAYOUT - (RXN-8262 (:LEFT-PRIMARIES CPD-520) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8004))
REACTION-LAYOUT - (RXN-10138 (:LEFT-PRIMARIES CPD-8004) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-10900))
REACTION-LAYOUT - (RXN-10132 (:LEFT-PRIMARIES QUERCETIN-337-TRISSULFATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-10894))
REACTION-LAYOUT - (RXN-10131 (:LEFT-PRIMARIES CPD-10893) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-10894))
REACTION-LAYOUT - (RXN-10130 (:LEFT-PRIMARIES QUERCETIN-34-BISSULFATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-10893))
REACTION-LAYOUT - (2.8.2.28-RXN (:LEFT-PRIMARIES QUERCETIN-33-BISSULFATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES QUERCETIN-337-TRISSULFATE))
REACTION-LAYOUT - (2.8.2.27-RXN (:LEFT-PRIMARIES CPD-1822) (:DIRECTION :L2R) (:RIGHT-PRIMARIES QUERCETIN-34-BISSULFATE))
REACTION-LAYOUT - (2.8.2.26-RXN (:LEFT-PRIMARIES CPD-1822) (:DIRECTION :L2R) (:RIGHT-PRIMARIES QUERCETIN-33-BISSULFATE))
REACTION-LAYOUT - (FLAVONOL-3-SULFOTRANSFERASE-RXN (:LEFT-PRIMARIES CPD-520) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-1822))
REACTION-LIST - RXN-10244
REACTION-LIST - RXN-8262
REACTION-LIST - RXN-10138
REACTION-LIST - RXN-10132
REACTION-LIST - RXN-10131
REACTION-LIST - RXN-10130
REACTION-LIST - 2.8.2.28-RXN
REACTION-LIST - 2.8.2.27-RXN
REACTION-LIST - 2.8.2.26-RXN
REACTION-LIST - FLAVONOL-3-SULFOTRANSFERASE-RXN
//
UNIQUE-ID - PWY-6035
TYPES - FLAVONOL-SYN
COMMON-NAME - 2,3-cis-flavanols biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |karthik|
PATHWAY-LINKS - (PELARGONIDIN-CMPD PWY-5125)
PATHWAY-LINKS - (CPD-591 PWY-5125)
PATHWAY-LINKS - (CPD-7090 PWY-5153)
REACTION-LAYOUT - (RXN-9723 (:LEFT-PRIMARIES CPD-7090) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-10411))
REACTION-LAYOUT - (RXN-9724 (:LEFT-PRIMARIES PELARGONIDIN-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-10413))
REACTION-LAYOUT - (RXN-9725 (:LEFT-PRIMARIES CPD-591) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7630))
REACTION-LIST - RXN-9723
REACTION-LIST - RXN-9724
REACTION-LIST - RXN-9725
SYNONYMS - 2,3-cis-flavan-3-ols biosynthesis
//
UNIQUE-ID - PWY-6064
TYPES - FLAVONOL-SYN
COMMON-NAME - methylquercetin biosynthesis
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |karthik|
PATHWAY-LINKS - (CPD-8004 PWY-6199)
PATHWAY-LINKS - (CPD-520 PWY-3101)
PREDECESSORS - (RXN-8262)
PREDECESSORS - (RXN-9817 RXN-9815)
PREDECESSORS - (RXN-9815)
PREDECESSORS - (2.1.1.83-RXN 2.1.1.82-RXN)
PREDECESSORS - (2.1.1.82-RXN QUERCETIN-3-O-METHYLTRANSFERASE-RXN)
PREDECESSORS - (QUERCETIN-3-O-METHYLTRANSFERASE-RXN)
REACTION-LAYOUT - (RXN-9817 (:LEFT-PRIMARIES CPD-10520) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-10529))
REACTION-LAYOUT - (RXN-9815 (:LEFT-PRIMARIES CPD-10527) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-10520))
REACTION-LAYOUT - (RXN-8262 (:LEFT-PRIMARIES CPD-520) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8004))
REACTION-LAYOUT - (2.1.1.83-RXN (:LEFT-PRIMARIES 345-TRIHYDROXY-37-DIMETHOXYFLAVONE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-10510))
REACTION-LAYOUT - (2.1.1.82-RXN (:LEFT-PRIMARIES 3457-TETRAHYDROXY-3-METHOXYFLAVONE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 345-TRIHYDROXY-37-DIMETHOXYFLAVONE))
REACTION-LAYOUT - (QUERCETIN-3-O-METHYLTRANSFERASE-RXN (:LEFT-PRIMARIES CPD-520) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3457-TETRAHYDROXY-3-METHOXYFLAVONE))
REACTION-LIST - RXN-9817
REACTION-LIST - RXN-9815
REACTION-LIST - RXN-8262
REACTION-LIST - 2.1.1.83-RXN
REACTION-LIST - 2.1.1.82-RXN
REACTION-LIST - QUERCETIN-3-O-METHYLTRANSFERASE-RXN
//
UNIQUE-ID - PWY-3101
TYPES - FLAVONOL-SYN
COMMON-NAME - flavonol biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |hartmut|
PATHWAY-LINKS - (CPD-520 PWY-6064 PWY-6199)
PATHWAY-LINKS - (DIHYDROKAEMPFEROL-CMPD PWY-5391 PWY1F-FLAVSYN)
PREDECESSORS - (RXN1F-93)
PREDECESSORS - (RXN-527 RXN-525)
PRIMARIES - (RXN-8262 (CPD-520) (CPD-8004))
PRIMARIES - (RXN1F-475 (CPD1F-461) (CPD1F-462))
PRIMARIES - (RXN1F-474 (CPD1F-90) (CPD1F-461))
PRIMARIES - (RXN1F-93 (DIHYDROKAEMPFEROL-CMPD) (CPD1F-90))
PRIMARIES - (RXN1F-461 (CPD1F-90) (CPD1F-453))
PRIMARIES - (RXN1F-444 (CPD1F-420) (CPD1F-431))
PRIMARIES - (RXN1F-443 (CPD1F-453) (CPD1F-420))
PRIMARIES - (RXN1F-462 (CPD-520) (CPD1F-437))
PRIMARIES - (RXN-527 (CPD-474) (CPD-520))
PRIMARIES - (RXN-525 (DIHYDROKAEMPFEROL-CMPD) (CPD-474))
PRIMARIES - (NARINGENIN-3-DIOXYGENASE-RXN (NARINGENIN-CMPD) (DIHYDROKAEMPFEROL-CMPD))
REACTION-LAYOUT - (RXN1F-93 (:LEFT-PRIMARIES DIHYDROKAEMPFEROL-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-90))
REACTION-LAYOUT - (RXN-527 (:LEFT-PRIMARIES CPD-474) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-520))
REACTION-LAYOUT - (RXN-525 (:LEFT-PRIMARIES DIHYDROKAEMPFEROL-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-474))
REACTION-LIST - RXN1F-93
REACTION-LIST - RXN-527
REACTION-LIST - RXN-525
//
UNIQUE-ID - PWY-5391
TYPES - FLAVONOL-SYN
COMMON-NAME - syringetin biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |hartmut|
PATHWAY-LINKS - (DIHYDROKAEMPFEROL-CMPD (PWY-3101 . :INCOMING))
PREDECESSORS - (RXN-7782)
PREDECESSORS - (RXN-8450 RXN-7782)
PREDECESSORS - (RXN-8451 RXN-8450)
PREDECESSORS - (RXN-8452 RXN-8451)
PRIMARIES - (RXN-8452 (CPD-8605) (SYRINGETIN))
PRIMARIES - (RXN-8451 (MYRICETIN) (CPD-8605))
PRIMARIES - (RXN-8450 (CPD-7087) (MYRICETIN))
PRIMARIES - (RXN-525 (DIHYDROKAEMPFEROL-CMPD) (CPD-474))
PRIMARIES - (RXN-7782 (DIHYDROKAEMPFEROL-CMPD) (CPD-7087))
REACTION-LAYOUT - (RXN-8452 (:LEFT-PRIMARIES CPD-8605) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SYRINGETIN))
REACTION-LAYOUT - (RXN-8451 (:LEFT-PRIMARIES MYRICETIN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8605))
REACTION-LAYOUT - (RXN-8450 (:LEFT-PRIMARIES CPD-7087) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MYRICETIN))
REACTION-LAYOUT - (RXN-7782 (:LEFT-PRIMARIES DIHYDROKAEMPFEROL-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7087))
REACTION-LIST - RXN-8452
REACTION-LIST - RXN-8451
REACTION-LIST - RXN-8450
REACTION-LIST - RXN-7782
//
UNIQUE-ID - PWY-5060
TYPES - FLAVONE-SYN
COMMON-NAME - luteolin biosynthesis
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |hartmut|
PATHWAY-LINKS - (CPD-6994 PWY1F-823)
PATHWAY-LINKS - (NARINGENIN-CMPD PWY1F-FLAVSYN)
PREDECESSORS - (RXN-7651 RXN-7686)
PREDECESSORS - (RXN-7653 RXN-7652)
PREDECESSORS - (RXN-7686)
PREDECESSORS - (RXN-7651 RXN-7650)
PREDECESSORS - (RXN-7650)
PREDECESSORS - (RXN-7687 RXN-7652)
PRIMARIES - (RXN-7687 (CPD-6994) (5734-TETRAHYDROXYFLAVONE))
PRIMARIES - (RXN-7686 (NARINGENIN-CMPD) (CPD-431))
PRIMARIES - (RXN-7653 (CPD-6994) (5734-TETRAHYDROXYFLAVONE))
PRIMARIES - (RXN-7652 (NARINGENIN-CMPD) (CPD-6994))
PRIMARIES - (RXN-7651 (CPD-431) (5734-TETRAHYDROXYFLAVONE))
PRIMARIES - (RXN-7650 (NARINGENIN-CMPD) (CPD-431))
REACTION-LAYOUT - (RXN-7687 (:LEFT-PRIMARIES CPD-6994) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5734-TETRAHYDROXYFLAVONE))
REACTION-LAYOUT - (RXN-7686 (:LEFT-PRIMARIES NARINGENIN-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-431))
REACTION-LAYOUT - (RXN-7653 (:LEFT-PRIMARIES CPD-6994) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5734-TETRAHYDROXYFLAVONE))
REACTION-LAYOUT - (RXN-7652 (:LEFT-PRIMARIES NARINGENIN-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6994))
REACTION-LAYOUT - (RXN-7651 (:LEFT-PRIMARIES CPD-431) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5734-TETRAHYDROXYFLAVONE))
REACTION-LAYOUT - (RXN-7650 (:LEFT-PRIMARIES NARINGENIN-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-431))
REACTION-LIST - RXN-7687
REACTION-LIST - RXN-7686
REACTION-LIST - RXN-7653
REACTION-LIST - RXN-7652
REACTION-LIST - RXN-7651
REACTION-LIST - RXN-7650
//
UNIQUE-ID - PWY-5176
TYPES - COUMARIN-SYN
COMMON-NAME - coumarin biosynthesis (via 2-coumarate)
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |hartmut|
PATHWAY-LINKS - (CPD-674 PWY1F-467)
PREDECESSORS - (TRANS-CINNAMATE-2-MONOOXYGENASE-RXN)
PREDECESSORS - (2.4.1.114-RXN TRANS-CINNAMATE-2-MONOOXYGENASE-RXN)
PREDECESSORS - (RXN-8035 2.4.1.114-RXN)
PREDECESSORS - (RXN-8036 RXN-8035)
PREDECESSORS - (RXN-8037 RXN-8036)
PRIMARIES - (2.4.1.114-RXN (2-COUMARATE) (CPD-459))
PRIMARIES - (TRANS-CINNAMATE-2-MONOOXYGENASE-RXN (CPD-674) (2-COUMARATE))
REACTION-LAYOUT - (RXN-8037 (:LEFT-PRIMARIES CPD-7418) (:DIRECTION :L2R) (:RIGHT-PRIMARIES COUMARIN))
REACTION-LAYOUT - (RXN-8036 (:LEFT-PRIMARIES CPD-7417) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7418))
REACTION-LAYOUT - (RXN-8035 (:LEFT-PRIMARIES CPD-459) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7417))
REACTION-LAYOUT - (2.4.1.114-RXN (:LEFT-PRIMARIES 2-COUMARATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-459))
REACTION-LAYOUT - (TRANS-CINNAMATE-2-MONOOXYGENASE-RXN (:LEFT-PRIMARIES CPD-674) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-COUMARATE))
REACTION-LIST - RXN-8037
REACTION-LIST - RXN-8036
REACTION-LIST - RXN-8035
REACTION-LIST - 2.4.1.114-RXN
REACTION-LIST - TRANS-CINNAMATE-2-MONOOXYGENASE-RXN
//
UNIQUE-ID - PWY-5365
TYPES - COUMARIN-SYN
COMMON-NAME - linear furanocoumarin biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |walk|
PREDECESSORS - (2.1.1.69-RXN RXN-8387)
PREDECESSORS - (RXN-8387 RXN-8386)
PREDECESSORS - (RXN-8386 RXN-8383)
PREDECESSORS - (RXN-8383 RXN-8382)
PREDECESSORS - (RXN-8382 2.1.1.69-RXN)
PRIMARIES - (RXN-8382 (CPD-8186) (CPD-8192))
PRIMARIES - (2.1.1.69-RXN (BERGAPTOL) (5-METHOXYFURANOCOUMARIN))
REACTION-LAYOUT - (2.1.1.69-RXN (:LEFT-PRIMARIES BERGAPTOL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-METHOXYFURANOCOUMARIN))
REACTION-LAYOUT - (RXN-8387 (:LEFT-PRIMARIES PHYTOALEXIN-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES BERGAPTOL))
REACTION-LAYOUT - (RXN-8386 (:LEFT-PRIMARIES CPD-8191) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHYTOALEXIN-CMPD))
REACTION-LAYOUT - (RXN-8383 (:LEFT-PRIMARIES CPD-8192) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8191))
REACTION-LAYOUT - (RXN-8382 (:LEFT-PRIMARIES CPD-8186) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8192))
REACTION-LIST - 2.1.1.69-RXN
REACTION-LIST - RXN-8387
REACTION-LIST - RXN-8386
REACTION-LIST - RXN-8383
REACTION-LIST - RXN-8382
//
UNIQUE-ID - PWY-5868
TYPES - COUMARIN-SYN
COMMON-NAME - simple coumarins biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |karthik|
HYPOTHETICAL-REACTIONS - RXN-9289
HYPOTHETICAL-REACTIONS - RXN-9271
HYPOTHETICAL-REACTIONS - RXN-9272
HYPOTHETICAL-REACTIONS - RXN-9273
HYPOTHETICAL-REACTIONS - RXN-9274
HYPOTHETICAL-REACTIONS - RXN-9268
HYPOTHETICAL-REACTIONS - RXN-9267
HYPOTHETICAL-REACTIONS - RXN-9265
HYPOTHETICAL-REACTIONS - RXN-9264
HYPOTHETICAL-REACTIONS - RXN-9261
HYPOTHETICAL-REACTIONS - RXN-9260
PREDECESSORS - (RXN-9272 RXN-9263)
PREDECESSORS - (RXN-9272 RXN-9270)
PREDECESSORS - (RXN-9271 RXN-9265)
PREDECESSORS - (RXN-9274 RXN-9289)
PREDECESSORS - (RXN-9289 RXN-9268)
PREDECESSORS - (RXN-9274 RXN-9265)
PREDECESSORS - (RXN-9273 RXN-9270)
PREDECESSORS - (RXN-9273 RXN-9263)
PREDECESSORS - (RXN-9270 RXN-9269)
PREDECESSORS - (RXN-1104 RXN-9266)
PREDECESSORS - (RXN-9269 RXN-1104)
PREDECESSORS - (RXN-9263 RXN-9268)
PREDECESSORS - (RXN-9268 RXN-9267)
PREDECESSORS - (RXN-9267 RXN-9266)
PREDECESSORS - (RXN-9266 RXN-2581)
PREDECESSORS - (RXN-2581 2.3.1.133-RXN)
PREDECESSORS - (2.3.1.133-RXN 4-COUMARATE--COA-LIGASE-RXN)
PREDECESSORS - (4-COUMARATE--COA-LIGASE-RXN)
PREDECESSORS - (RXN-9260)
PREDECESSORS - (RXN-9265 RXN-9264)
PREDECESSORS - (RXN-9263 RXN-9262)
PREDECESSORS - (RXN-9264 RXN-9261)
PREDECESSORS - (RXN-9262 RXN-9261)
PREDECESSORS - (RXN-9261 RXN-9260)
PRIMARIES - (RXN-9271 NIL (CPD-9836))
PRIMARIES - (RXN-9272 (SCOPOLETIN) (CPD-9836))
PRIMARIES - (RXN-9289 (CPD-8097) (CPD-9831))
PRIMARIES - (2.3.1.133-RXN (P-COUMAROYL-COA) (CPD-412))
REACTION-LAYOUT - (RXN-9289 (:LEFT-PRIMARIES CPD-8097) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9831))
REACTION-LAYOUT - (RXN-9271 (:LEFT-PRIMARIES CPD-9831) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9836))
REACTION-LAYOUT - (RXN-9272 (:LEFT-PRIMARIES SCOPOLETIN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9836))
REACTION-LAYOUT - (RXN-9273 (:LEFT-PRIMARIES SCOPOLETIN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9827))
REACTION-LAYOUT - (RXN-9274 (:LEFT-PRIMARIES CPD-9831) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9827))
REACTION-LAYOUT - (RXN-1104 (:LEFT-PRIMARIES CPD-676) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FERULIC-ACID))
REACTION-LAYOUT - (RXN-9270 (:LEFT-PRIMARIES CPD-9807) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SCOPOLETIN))
REACTION-LAYOUT - (RXN-9269 (:LEFT-PRIMARIES FERULIC-ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9807))
REACTION-LAYOUT - (RXN-9268 (:LEFT-PRIMARIES CPD-9803) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8097))
REACTION-LAYOUT - (RXN-9267 (:LEFT-PRIMARIES CPD-676) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9803))
REACTION-LAYOUT - (RXN-9266 (:LEFT-PRIMARIES CAFFEOYLSHIKIMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-676))
REACTION-LAYOUT - (RXN-2581 (:LEFT-PRIMARIES CPD-412) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CAFFEOYLSHIKIMATE))
REACTION-LAYOUT - (2.3.1.133-RXN (:LEFT-PRIMARIES P-COUMAROYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-412))
REACTION-LAYOUT - (4-COUMARATE--COA-LIGASE-RXN (:LEFT-PRIMARIES COUMARATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES P-COUMAROYL-COA))
REACTION-LAYOUT - (RXN-9262 (:LEFT-PRIMARIES CPD-8186) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8097))
REACTION-LAYOUT - (RXN-9265 (:LEFT-PRIMARIES CPD-9828) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9831))
REACTION-LAYOUT - (RXN-9264 (:LEFT-PRIMARIES CPD-8186) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9828))
REACTION-LAYOUT - (RXN-9263 (:LEFT-PRIMARIES CPD-8097) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SCOPOLETIN))
REACTION-LAYOUT - (RXN-9261 (:LEFT-PRIMARIES CPD-9800) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8186))
REACTION-LAYOUT - (RXN-9260 (:LEFT-PRIMARIES COUMARATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9800))
REACTION-LIST - RXN-9289
REACTION-LIST - RXN-9271
REACTION-LIST - RXN-9272
REACTION-LIST - RXN-9273
REACTION-LIST - RXN-9274
REACTION-LIST - RXN-1104
REACTION-LIST - RXN-9270
REACTION-LIST - RXN-9269
REACTION-LIST - RXN-9268
REACTION-LIST - RXN-9267
REACTION-LIST - RXN-9266
REACTION-LIST - RXN-2581
REACTION-LIST - 2.3.1.133-RXN
REACTION-LIST - 4-COUMARATE--COA-LIGASE-RXN
REACTION-LIST - RXN-9262
REACTION-LIST - RXN-9265
REACTION-LIST - RXN-9264
REACTION-LIST - RXN-9263
REACTION-LIST - RXN-9261
REACTION-LIST - RXN-9260
SYNONYMS - coumarin biosynthesis
//
UNIQUE-ID - PWY-5349
TYPES - COUMARIN-SYN
COMMON-NAME - esculetin biosynthesis
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |walk|
PATHWAY-LINKS - (CPD-676 PWY-2181)
PREDECESSORS - (RXN-8333 RXN-8332)
PREDECESSORS - (RXN-8334 RXN-8333)
PREDECESSORS - (RXN-8335 RXN-8334)
PREDECESSORS - (RXN-8332 RXN-8336)
PRIMARIES - (RXN-8335 (CPD-8096) (CPD-8097))
PRIMARIES - (RXN-8333 (CPD-8094) (CPD-8095))
REACTION-LAYOUT - (RXN-8336 (:LEFT-PRIMARIES CPD-676) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8098))
REACTION-LAYOUT - (RXN-8335 (:LEFT-PRIMARIES CPD-8096) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8097))
REACTION-LAYOUT - (RXN-8334 (:LEFT-PRIMARIES CPD-8095) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8096))
REACTION-LAYOUT - (RXN-8333 (:LEFT-PRIMARIES CPD-8094) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8095))
REACTION-LAYOUT - (RXN-8332 (:LEFT-PRIMARIES CPD-8098) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8094))
REACTION-LIST - RXN-8336
REACTION-LIST - RXN-8335
REACTION-LIST - RXN-8334
REACTION-LIST - RXN-8333
REACTION-LIST - RXN-8332
//
UNIQUE-ID - PWY-83
TYPES - Metabolic-Clusters
TYPES - LIGNIN-SYN
COMMON-NAME - monolignol glucosides biosynthesis
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |hartmut|
PATHWAY-LINKS - (CONIFERYL-ALDEHYDE PWY-361)
PATHWAY-LINKS - (SINAPALDEHYDE PWY-361)
PATHWAY-LINKS - (SINAPYL-ALCOHOL PWY-361)
PREDECESSORS - (RXN-95)
PREDECESSORS - (RXN-92)
PREDECESSORS - (RXN-91)
PREDECESSORS - (RXN-90)
PRIMARIES - (RXN-95 (CPD-94) (CPD-82))
PRIMARIES - (RXN-92 (SINAPALDEHYDE) (CPD-79))
PRIMARIES - (RXN-91 (CONIFERYL-ALDEHYDE) (CPD-81))
PRIMARIES - (RXN-90 (SINAPYL-ALCOHOL) (CPD-63))
PRIMARIES - (2.4.1.111-RXN (CONIFERYL-ALCOHOL) (CPD-1777))
REACTION-LAYOUT - (RXN-95 (:LEFT-PRIMARIES CPD-94) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-82))
REACTION-LAYOUT - (RXN-92 (:LEFT-PRIMARIES SINAPALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-79))
REACTION-LAYOUT - (RXN-91 (:LEFT-PRIMARIES CONIFERYL-ALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-81))
REACTION-LAYOUT - (RXN-90 (:LEFT-PRIMARIES SINAPYL-ALCOHOL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-63))
REACTION-LIST - RXN-95
REACTION-LIST - RXN-92
REACTION-LIST - RXN-91
REACTION-LIST - RXN-90
//
UNIQUE-ID - PWY-5791
TYPES - QUINONE-SYN
TYPES - DHNA-Biosynthesis
COMMON-NAME - 1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - SRI
CREDITS - |caspi|
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |zhang|
PATHWAY-LINKS - (CHORISMATE ARO-PWY)
PREDECESSORS - (RXN-9311 NAPHTHOATE-SYN-RXN)
PREDECESSORS - (NAPHTHOATE-SYN-RXN RXN-7614)
PREDECESSORS - (RXN-7614 O-SUCCINYLBENZOATE-COA-SYN-RXN)
PREDECESSORS - (O-SUCCINYLBENZOATE-COA-SYN-RXN RXN-9310)
PREDECESSORS - (RXN-9310 2.5.1.64-RXN)
PREDECESSORS - (2.5.1.64-RXN ISOCHORSYN-RXN)
PRIMARIES - (RXN-9310 NIL (CPD-9923))
REACTION-LAYOUT - (RXN-9311 (:LEFT-PRIMARIES CPD-9925) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROXYNAPHTHOATE))
REACTION-LAYOUT - (NAPHTHOATE-SYN-RXN (:LEFT-PRIMARIES CPD-6972) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9925))
REACTION-LAYOUT - (RXN-9310 (:LEFT-PRIMARIES CPD-9924) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9923))
REACTION-LAYOUT - (RXN-7614 (:LEFT-PRIMARIES O-SUCCINYLBENZOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6972))
REACTION-LAYOUT - (O-SUCCINYLBENZOATE-COA-SYN-RXN (:LEFT-PRIMARIES CPD-9923) (:DIRECTION :L2R) (:RIGHT-PRIMARIES O-SUCCINYLBENZOATE))
REACTION-LAYOUT - (2.5.1.64-RXN (:LEFT-PRIMARIES ISOCHORISMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9924))
REACTION-LAYOUT - (ISOCHORSYN-RXN (:LEFT-PRIMARIES CHORISMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ISOCHORISMATE))
REACTION-LIST - RXN-9311
REACTION-LIST - NAPHTHOATE-SYN-RXN
REACTION-LIST - RXN-9310
REACTION-LIST - RXN-7614
REACTION-LIST - O-SUCCINYLBENZOATE-COA-SYN-RXN
REACTION-LIST - 2.5.1.64-RXN
REACTION-LIST - ISOCHORSYN-RXN
SYNONYMS - DHNA biosynthesis
//
UNIQUE-ID - PWY-5474
TYPES - N-CONTAINING-SECONDARY-CMPD-SYN
COMMON-NAME - hydroxycinnamic acid tyramine amides biosynthesis
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |zhang|
PREDECESSORS - (RXN-8715 TYROSINE-DECARBOXYLASE-RXN)
PREDECESSORS - (RXN-8714 TYROSINE-DECARBOXYLASE-RXN)
PREDECESSORS - (RXN-8713 TYROSINE-DECARBOXYLASE-RXN)
PREDECESSORS - (TYRAMINE-N-FERULOYLTRANSFERASE-RXN TYROSINE-DECARBOXYLASE-RXN)
PRIMARIES - (RXN-8715 (TYRAMINE) (CPD-8943))
PRIMARIES - (RXN-8714 (TYRAMINE) (CPD-8942))
PRIMARIES - (RXN-8713 (TYRAMINE) (CPD-8941))
PRIMARIES - (TYRAMINE-N-FERULOYLTRANSFERASE-RXN (TYRAMINE) (CPD-440))
REACTION-LAYOUT - (RXN-8715 (:LEFT-PRIMARIES TYRAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8943))
REACTION-LAYOUT - (RXN-8714 (:LEFT-PRIMARIES TYRAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8942))
REACTION-LAYOUT - (RXN-8713 (:LEFT-PRIMARIES TYRAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8941))
REACTION-LAYOUT - (TYRAMINE-N-FERULOYLTRANSFERASE-RXN (:LEFT-PRIMARIES TYRAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-440))
REACTION-LAYOUT - (TYROSINE-DECARBOXYLASE-RXN (:LEFT-PRIMARIES TYR) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TYRAMINE))
REACTION-LIST - RXN-8715
REACTION-LIST - RXN-8714
REACTION-LIST - RXN-8713
REACTION-LIST - TYRAMINE-N-FERULOYLTRANSFERASE-RXN
REACTION-LIST - TYROSINE-DECARBOXYLASE-RXN
SYNONYMS - hydroxycinnamic acid amides biosynthesis
//
UNIQUE-ID - PWY-1187
TYPES - GLUCOSINOLATE-SYN
COMMON-NAME - glucosinolate biosynthesis from homomethionine
CITATIONS - :EV-COMP-AINF:3497824357:liya
PREDECESSORS - (RXN-2224 BENZOATE--COA-LIGASE-RXN)
PREDECESSORS - (RXN-2224 RXN-2223)
PREDECESSORS - (RXN-2223 RXN-2221)
PREDECESSORS - (RXN-2222 RXN-2221)
PREDECESSORS - (RXN-2221 RXN-2209)
PREDECESSORS - (RXN-2209 RXN-2208)
PREDECESSORS - (RXN-2207 RXN-2206)
PREDECESSORS - (RXN-8052 RXN-2207)
PREDECESSORS - (RXN-2208 RXN-8052)
PRIMARIES - (RXN-2224 (BENZOYLCOA 3-HYDROXYPROPYL-GLUCOSINOLATE) (3-BENZOYLOXYPROPYL-GLUCOSINOLATE))
PRIMARIES - (BENZOATE--COA-LIGASE-RXN (BENZOATE) (BENZOYLCOA))
PRIMARIES - (RXN-2209 (3-METHYLTHIOPROPYL-DESULFO-GLUCOSINOLATE) (3-METHYLTHIOPROPYL-GLUCOSINOLATE))
PRIMARIES - (RXN-2207 (3-METHYLTHIOPROPANALDOXIME) (CPD-7546))
PRIMARIES - (RXN-2208 (3-METHYLTHIOPROPYLHYDROXAMIC-ACID) (3-METHYLTHIOPROPYL-DESULFO-GLUCOSINOLATE))
REACTION-LAYOUT - (BENZOATE--COA-LIGASE-RXN (:LEFT-PRIMARIES BENZOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES BENZOYLCOA))
REACTION-LAYOUT - (RXN-8052 (:LEFT-PRIMARIES CPD-7546) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-METHYLTHIOPROPYLHYDROXAMIC-ACID))
REACTION-LAYOUT - (RXN-2224 (:LEFT-PRIMARIES BENZOYLCOA 3-HYDROXYPROPYL-GLUCOSINOLATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-BENZOYLOXYPROPYL-GLUCOSINOLATE))
REACTION-LAYOUT - (RXN-2223 (:LEFT-PRIMARIES 3-METHYLSULFINYLPROPYL-GLUCOSINOLATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-HYDROXYPROPYL-GLUCOSINOLATE))
REACTION-LAYOUT - (RXN-2222 (:LEFT-PRIMARIES 3-METHYLSULFINYLPROPYL-GLUCOSINOLATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-PROPENYL-GLUCOSINOLATE))
REACTION-LAYOUT - (RXN-2221 (:LEFT-PRIMARIES 3-METHYLTHIOPROPYL-GLUCOSINOLATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-METHYLSULFINYLPROPYL-GLUCOSINOLATE))
REACTION-LAYOUT - (RXN-2209 (:LEFT-PRIMARIES 3-METHYLTHIOPROPYL-DESULFO-GLUCOSINOLATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-METHYLTHIOPROPYL-GLUCOSINOLATE))
REACTION-LAYOUT - (RXN-2208 (:LEFT-PRIMARIES 3-METHYLTHIOPROPYLHYDROXAMIC-ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-METHYLTHIOPROPYL-DESULFO-GLUCOSINOLATE))
REACTION-LAYOUT - (RXN-2207 (:LEFT-PRIMARIES 3-METHYLTHIOPROPANALDOXIME) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7546))
REACTION-LAYOUT - (RXN-2206 (:LEFT-PRIMARIES HOMOMETHIONINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-METHYLTHIOPROPANALDOXIME))
REACTION-LIST - BENZOATE--COA-LIGASE-RXN
REACTION-LIST - RXN-8052
REACTION-LIST - RXN-2224
REACTION-LIST - RXN-2223
REACTION-LIST - RXN-2222
REACTION-LIST - RXN-2221
REACTION-LIST - RXN-2209
REACTION-LIST - RXN-2208
REACTION-LIST - RXN-2207
REACTION-LIST - RXN-2206
//
UNIQUE-ID - PWY-5808
TYPES - TERPENOPHENOLICS-SYN
COMMON-NAME - hyperforin biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - O-27
CREDITS - |pujar|
HYPOTHETICAL-REACTIONS - RXN-9135
PREDECESSORS - (RXN-9135 RXN-7813)
PREDECESSORS - (RXN-7813 RXN-7812)
PREDECESSORS - (RXN-7812 RXN-7805)
REACTION-LAYOUT - (RXN-9135 (:LEFT-PRIMARIES CPD-7107) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9635))
REACTION-LAYOUT - (RXN-7813 (:LEFT-PRIMARIES 4-PRENYLPHLORISOBUTYROPHENONE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7107))
REACTION-LAYOUT - (RXN-7812 (:LEFT-PRIMARIES CPD-7104) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 4-PRENYLPHLORISOBUTYROPHENONE PROTON))
REACTION-LAYOUT - (RXN-7805 (:LEFT-PRIMARIES PROTON) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7104))
REACTION-LIST - RXN-9135
REACTION-LIST - RXN-7813
REACTION-LIST - RXN-7812
REACTION-LIST - RXN-7805
//
UNIQUE-ID - PWY-2301
TYPES - Myo-Inositol-Biosynthesis
COMMON-NAME - myo-inositol biosynthesis
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - SRI
CREDITS - |caspi|
PREDECESSORS - (MYO-INOSITOL-1OR-4-MONOPHOSPHATASE-RXN MYO-INOSITOL-1-PHOSPHATE-SYNTHASE-RXN)
PREDECESSORS - (MYO-INOSITOL-1-PHOSPHATE-SYNTHASE-RXN)
REACTION-LAYOUT - (MYO-INOSITOL-1OR-4-MONOPHOSPHATASE-RXN (:LEFT-PRIMARIES 1-L-MYO-INOSITOL-1-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MYO-INOSITOL))
REACTION-LAYOUT - (MYO-INOSITOL-1-PHOSPHATE-SYNTHASE-RXN (:LEFT-PRIMARIES |D-glucose-6-phosphate|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 1-L-MYO-INOSITOL-1-P))
REACTION-LIST - MYO-INOSITOL-1OR-4-MONOPHOSPHATASE-RXN
REACTION-LIST - MYO-INOSITOL-1-PHOSPHATE-SYNTHASE-RXN
//
UNIQUE-ID - PWY-4661
TYPES - Phytate-Biosynthesis
COMMON-NAME - lipid-independent phytate biosynthesis
CITATIONS - :EV-COMP-AINF:3497824357:liya
PREDECESSORS - (RXN-7202 MYO-INOSITOL-1-KINASE-RXN)
PREDECESSORS - (MYO-INOSITOL-1-KINASE-RXN)
PREDECESSORS - (RXN-7163 2.7.1.134-RXN)
PREDECESSORS - (2.7.1.134-RXN RXN-7204)
PREDECESSORS - (RXN-7204 RXN-7203)
PREDECESSORS - (RXN-7203 RXN-7202)
PREDECESSORS - (MYO-INOSITOL-1-PHOSPHATE-SYNTHASE-RXN)
PREDECESSORS - (RXN-7202 MYO-INOSITOL-1-PHOSPHATE-SYNTHASE-RXN)
PRIMARIES - (MYO-INOSITOL-1-KINASE-RXN (MYO-INOSITOL) (1-L-MYO-INOSITOL-1-P))
PRIMARIES - (MYO-INOSITOL-1-PHOSPHATE-SYNTHASE-RXN (GLC-6-P) (1-L-MYO-INOSITOL-1-P))
PRIMARIES - (RXN-7202 (1-L-MYO-INOSITOL-1-P) (D-MYO-INOSITOL-34-BISPHOSPHATE))
PRIMARIES - (RXN-7163 (CPD-1107) (MI-HEXAKISPHOSPHATE))
PRIMARIES - (2.7.1.134-RXN (CPD-178) (CPD-1107))
PRIMARIES - (RXN-7204 (CPD-6681) (CPD-178))
PRIMARIES - (RXN-7203 (D-MYO-INOSITOL-34-BISPHOSPHATE) (CPD-6681))
REACTION-LAYOUT - (MYO-INOSITOL-1-KINASE-RXN (:LEFT-PRIMARIES MYO-INOSITOL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 1-L-MYO-INOSITOL-1-P))
REACTION-LAYOUT - (RXN-7202 (:LEFT-PRIMARIES 1-L-MYO-INOSITOL-1-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES D-MYO-INOSITOL-34-BISPHOSPHATE))
REACTION-LAYOUT - (MYO-INOSITOL-1-PHOSPHATE-SYNTHASE-RXN (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 1-L-MYO-INOSITOL-1-P))
REACTION-LAYOUT - (2.7.1.134-RXN (:LEFT-PRIMARIES CPD-178) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-1107))
REACTION-LAYOUT - (RXN-7203 (:LEFT-PRIMARIES D-MYO-INOSITOL-34-BISPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6681))
REACTION-LAYOUT - (RXN-7204 (:LEFT-PRIMARIES CPD-6681) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-178))
REACTION-LAYOUT - (RXN-7163 (:LEFT-PRIMARIES CPD-1107) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MI-HEXAKISPHOSPHATE))
REACTION-LIST - MYO-INOSITOL-1-KINASE-RXN
REACTION-LIST - RXN-7202
REACTION-LIST - MYO-INOSITOL-1-PHOSPHATE-SYNTHASE-RXN
REACTION-LIST - 2.7.1.134-RXN
REACTION-LIST - RXN-7203
REACTION-LIST - RXN-7204
REACTION-LIST - RXN-7163
SYNONYMS - lipid-independent phytic acid biosynthesis
SYNONYMS - lipid-independent InsP6 biosynthesis
//
UNIQUE-ID - PWY-5945
TYPES - TETRATERPENOID-SYN
TYPES - CAROTENOID-SYN
TYPES - Interconversion
COMMON-NAME - antheraxanthin and violaxanthin biosynthesis
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (CPD1F-133 PWY-695)
PREDECESSORS - (RXN-7979 RXN-7978)
PREDECESSORS - (RXN-7984 RXN-7978)
PREDECESSORS - (RXN-7978 RXN-7985)
PREDECESSORS - (RXN-7985 RXN-7978)
REACTION-LAYOUT - (RXN-7979 (:LEFT-PRIMARIES CPD1F-131) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-133))
REACTION-LAYOUT - (RXN-7984 (:LEFT-PRIMARIES CPD1F-133) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CPD1F-131))
REACTION-LAYOUT - (RXN-7978 (:LEFT-PRIMARIES CPD1F-130) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-131))
REACTION-LAYOUT - (RXN-7985 (:LEFT-PRIMARIES CPD1F-131) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-130))
REACTION-LIST - RXN-7979
REACTION-LIST - RXN-7984
REACTION-LIST - RXN-7978
REACTION-LIST - RXN-7985
SYNONYMS - xanthophyll cycle
//
UNIQUE-ID - PWY-6287
TYPES - TETRATERPENOID-SYN
TYPES - CAROTENOID-SYN
COMMON-NAME - neurosporene biosynthesis
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - SRI
CREDITS - |caspi|
IN-PATHWAY - PWY-5942
PATHWAY-LINKS - (NEUROSPORENE PWY-5942)
PATHWAY-LINKS - (GERANYLGERANYL-PP PWY-5120)
PREDECESSORS - (2.5.1.32-RXN)
PREDECESSORS - (RXN-8002 2.5.1.32-RXN)
PREDECESSORS - (RXN-8023 RXN-8002)
PREDECESSORS - (RXN-8024 RXN-8023)
PREDECESSORS - (RXN-8022 RXN-8024)
PRIMARIES - (RXN-7979 (CPD1F-131) (CPD1F-133))
PRIMARIES - (RXN-7978 (CPD1F-130) (CPD1F-131))
PRIMARIES - (RXN-7985 (CPD1F-131) (CPD1F-130))
PRIMARIES - (RXN-8026 (CPD-7409) (CPD1F-130))
PRIMARIES - (RXN-8025 (CPD1F-129) (CPD-7409))
PRIMARIES - (RXN-8024 (CPD-7408) (CPD1F-98))
PRIMARIES - (RXN-8023 (PHYTOENE) (CPD-7408))
PRIMARIES - (RXN-8002 (CPD-464) (PHYTOENE))
PRIMARIES - (2.5.1.32-RXN (GERANYLGERANYL-PP) (CPD-464))
PRIMARIES - (1.14.99.30-RXN (NEUROSPORENE) (CPD1F-114))
PRIMARIES - (RXN-8022 (CPD1F-98) (NEUROSPORENE))
PRIMARIES - (FARNESYLTRANSTRANSFERASE-RXN (FARNESYL-PP DELTA3-ISOPENTENYL-PP) (GERANYLGERANYL-PP))
PRIMARIES - (RXN-5962 (CPD-5661) (CPD1F-119))
PRIMARIES - (RXN-5961 (CPD1F-118) (CPD-5661))
REACTION-LAYOUT - (RXN-8024 (:LEFT-PRIMARIES CPD-7408) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-98))
REACTION-LAYOUT - (RXN-8023 (:LEFT-PRIMARIES PHYTOENE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7408))
REACTION-LAYOUT - (RXN-8002 (:LEFT-PRIMARIES CPD-464) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHYTOENE))
REACTION-LAYOUT - (2.5.1.32-RXN (:LEFT-PRIMARIES GERANYLGERANYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-464))
REACTION-LAYOUT - (RXN-8022 (:LEFT-PRIMARIES CPD1F-98) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NEUROSPORENE))
REACTION-LIST - RXN-8024
REACTION-LIST - RXN-8023
REACTION-LIST - RXN-8002
REACTION-LIST - 2.5.1.32-RXN
REACTION-LIST - RXN-8022
SUPER-PATHWAYS - PWY-5942
//
UNIQUE-ID - PWY-6304
TYPES - DITERPENOID-SYN
COMMON-NAME - casbene biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - O-28
CREDITS - |pujar|
PATHWAY-LINKS - (GERANYLGERANYL-PP PWY-5120)
PREDECESSORS - (CASBENE-SYNTHASE-RXN)
REACTION-LAYOUT - (CASBENE-SYNTHASE-RXN (:LEFT-PRIMARIES GERANYLGERANYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-684))
REACTION-LIST - CASBENE-SYNTHASE-RXN
//
UNIQUE-ID - PWY-5063
TYPES - Phytyl-Diphosphate-Biosynthesis
COMMON-NAME - phytyl diphosphate biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (GERANYLGERANYL-PP PWY-5120 PWY-5121)
PATHWAY-LINKS - (DELTA3-ISOPENTENYL-PP NONMEVIPP-PWY)
PATHWAY-LINKS - (PHYTYL-PYROPHOSPHATE PWY-1422 PWY-5086)
PREDECESSORS - (RXN-7660 RXN-7659)
PREDECESSORS - (RXN-7659 RXN-7658)
PRIMARIES - (FARNESYLTRANSTRANSFERASE-RXN (FARNESYL-PP DELTA3-ISOPENTENYL-PP) (GERANYLGERANYL-PP))
PRIMARIES - (RXN-7660 (CPD-7003) (PHYTYL-PYROPHOSPHATE))
PRIMARIES - (RXN-7659 (CPD-7002) (CPD-7003))
PRIMARIES - (RXN-7658 (GERANYLGERANYL-PP) (CPD-7002))
REACTION-LAYOUT - (RXN-7658 (:LEFT-PRIMARIES GERANYLGERANYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7002))
REACTION-LAYOUT - (RXN-7659 (:LEFT-PRIMARIES CPD-7002) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7003))
REACTION-LAYOUT - (RXN-7660 (:LEFT-PRIMARIES CPD-7003) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHYTYL-PYROPHOSPHATE))
REACTION-LIST - RXN-7658
REACTION-LIST - RXN-7659
REACTION-LIST - RXN-7660
SYNONYMS - phytyl pyrophosphate biosynthesis
SYNONYMS - phytyl-PP biosynthesis
//
UNIQUE-ID - PWY-5670
TYPES - TRITERPENOID-SYN
TYPES - Other-biosynthesis
COMMON-NAME - epoxysqualene biosynthesis
CREDITS - SRI
CREDITS - |caspi|
IN-PATHWAY - PWY-2541
PATHWAY-LINKS - (EPOXYSQUALENE PWY-2541)
PATHWAY-LINKS - (FARNESYL-PP PWY-5123)
PATHWAY-LINKS - (CPD-707 PWY-2582 PWY-699)
PREDECESSORS - (SQUALENE-MONOOXYGENASE-RXN RXN66-281)
PREDECESSORS - (RXN66-281 2.5.1.21-RXN)
PRIMARIES - (RXN-8352 (CPD-8134) (CPD-4161))
PRIMARIES - (RXN-8353 (CPD-4141) (CPD-8134))
PRIMARIES - (2.1.1.143-RXN (CPD-4101) (CPD-4124))
REACTION-LAYOUT - (SQUALENE-MONOOXYGENASE-RXN (:LEFT-PRIMARIES SQUALENE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES EPOXYSQUALENE))
REACTION-LAYOUT - (RXN66-281 (:LEFT-PRIMARIES CPD-465) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SQUALENE))
REACTION-LAYOUT - (2.5.1.21-RXN (:LEFT-PRIMARIES FARNESYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-465))
REACTION-LIST - SQUALENE-MONOOXYGENASE-RXN
REACTION-LIST - RXN66-281
REACTION-LIST - 2.5.1.21-RXN
SUPER-PATHWAYS - PWY-2541
//
UNIQUE-ID - PWY-6105
TYPES - TRITERPENOID-SYN
COMMON-NAME - C30 botryococcene biosynthesis
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - O-28
CREDITS - |pujar|
PREDECESSORS - (RXN66-281 2.5.1.21-RXN)
PREDECESSORS - (2.5.1.21-RXN)
PREDECESSORS - (RXN-9911)
REACTION-LAYOUT - (RXN66-281 (:LEFT-PRIMARIES CPD-465) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SQUALENE))
REACTION-LAYOUT - (2.5.1.21-RXN (:LEFT-PRIMARIES FARNESYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-465))
REACTION-LAYOUT - (RXN-9911 (:LEFT-PRIMARIES FARNESYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-10662))
REACTION-LIST - RXN66-281
REACTION-LIST - 2.5.1.21-RXN
REACTION-LIST - RXN-9911
SYNONYMS - botryococcene hydrocarbon biosynthesis
//
UNIQUE-ID - PWY-922
TYPES - ISOPRENOIDS
TYPES - Cofactor-Biosynthesis
TYPES - Lipid-Biosynthesis
COMMON-NAME - mevalonate pathway I
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - O-18
CREDITS - |pellegrini-toole|
IN-PATHWAY - PWY-5910
PATHWAY-LINKS - (MEVALONATE PWY-5074)
PATHWAY-LINKS - (CPD-4211 PWY-2781 PWY-5120 PWY-5123 PWY-2681 PWY-5122)
PATHWAY-LINKS - (FARNESYL-PP PWY-2541)
PREDECESSORS - (IPPISOM-RXN DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN)
PREDECESSORS - (DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN PHOSPHOMEVALONATE-KINASE-RXN)
PREDECESSORS - (PHOSPHOMEVALONATE-KINASE-RXN MEVALONATE-KINASE-RXN)
PREDECESSORS - (MEVALONATE-KINASE-RXN 1.1.1.34-RXN)
PREDECESSORS - (1.1.1.34-RXN HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN)
PREDECESSORS - (HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN ACETYL-COA-ACETYLTRANSFER-RXN)
PRIMARIES - (HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN (ACETOACETYL-COA) (3-HYDROXY-3-METHYL-GLUTARYL-COA))
REACTION-LAYOUT - (IPPISOM-RXN (:LEFT-PRIMARIES DELTA3-ISOPENTENYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4211))
REACTION-LAYOUT - (DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN (:LEFT-PRIMARIES CPD-641) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DELTA3-ISOPENTENYL-PP))
REACTION-LAYOUT - (PHOSPHOMEVALONATE-KINASE-RXN (:LEFT-PRIMARIES CPD-499) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-641))
REACTION-LAYOUT - (MEVALONATE-KINASE-RXN (:LEFT-PRIMARIES MEVALONATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-499))
REACTION-LAYOUT - (1.1.1.34-RXN (:LEFT-PRIMARIES MEVALONATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 3-HYDROXY-3-METHYL-GLUTARYL-COA))
REACTION-LAYOUT - (HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN (:LEFT-PRIMARIES ACETYL-COA ACETOACETYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-HYDROXY-3-METHYL-GLUTARYL-COA))
REACTION-LAYOUT - (ACETYL-COA-ACETYLTRANSFER-RXN (:LEFT-PRIMARIES ACETYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ACETOACETYL-COA))
REACTION-LIST - IPPISOM-RXN
REACTION-LIST - DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN
REACTION-LIST - PHOSPHOMEVALONATE-KINASE-RXN
REACTION-LIST - MEVALONATE-KINASE-RXN
REACTION-LIST - 1.1.1.34-RXN
REACTION-LIST - HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN
REACTION-LIST - ACETYL-COA-ACETYLTRANSFER-RXN
SUPER-PATHWAYS - PWY-5910
SYNONYMS - isoprenoid pathway
SYNONYMS - MVA pathway
SYNONYMS - isopentenyl diphosphate biosynthesis - mevalonate dependent
//
UNIQUE-ID - PWY-5829
TYPES - MONOTERPENOID-SYN
COMMON-NAME - geraniol and geranial biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - O-27
CREDITS - |pujar|
PATHWAY-LINKS - (GERANYL-PP PWY-5122)
PREDECESSORS - (RXN-9193 GERANIOL-DEHYDROGENASE-RXN)
PREDECESSORS - (GERANIOL-DEHYDROGENASE-RXN RXN-8618)
REACTION-LAYOUT - (RXN-9193 (:LEFT-PRIMARIES GERANIAL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9762))
REACTION-LAYOUT - (GERANIOL-DEHYDROGENASE-RXN (:LEFT-PRIMARIES GERANIOL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GERANIAL))
REACTION-LAYOUT - (RXN-8618 (:LEFT-PRIMARIES GERANYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GERANIOL))
REACTION-LIST - RXN-9193
REACTION-LIST - GERANIOL-DEHYDROGENASE-RXN
REACTION-LIST - RXN-8618
SYNONYMS - citral biosynthesis
//
UNIQUE-ID - PWY-6012
TYPES - Cofactor-Biosynthesis
COMMON-NAME - acyl carrier protein metabolism
CITATIONS - :EV-COMP-AINF:3497824359:liya
CREDITS - SRI
CREDITS - |caspi|
PREDECESSORS - (3.1.4.14-RXN HOLO-ACP-SYNTH-RXN)
PREDECESSORS - (HOLO-ACP-SYNTH-RXN 3.1.4.14-RXN)
PRIMARIES - (3.1.4.14-RXN (ACP) (|apo-ACP|))
REACTION-LAYOUT - (HOLO-ACP-SYNTH-RXN (:LEFT-PRIMARIES |apo-ACP|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ACP))
REACTION-LAYOUT - (3.1.4.14-RXN (:LEFT-PRIMARIES ACP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |apo-ACP|))
REACTION-LIST - HOLO-ACP-SYNTH-RXN
REACTION-LIST - 3.1.4.14-RXN
SYNONYMS - [acp] metabolism
SYNONYMS - ACP metabolism
//
UNIQUE-ID - SAM-PWY
TYPES - Cofactor-Biosynthesis
COMMON-NAME - S-adenosylmethionine biosynthesis
CREDITS - O-18
CREDITS - |riley|
IN-PATHWAY - PWY-6151
PATHWAY-LINKS - (MET PWY-702)
PREDECESSORS - (S-ADENMETSYN-RXN)
PRIMARIES - (HOMOCYSMET-RXN (HOMO-CYS) NIL)
REACTION-LAYOUT - (S-ADENMETSYN-RXN (:LEFT-PRIMARIES MET) (:DIRECTION :L2R) (:RIGHT-PRIMARIES S-ADENOSYLMETHIONINE))
REACTION-LIST - S-ADENMETSYN-RXN
SUPER-PATHWAYS - PWY-6151
//
UNIQUE-ID - PWY-5194
TYPES - Porphyrin-Compounds-Biosynthesis
COMMON-NAME - siroheme biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (UROPORPHYRINOGEN-III PWY-5188)
PREDECESSORS - (RXN-8675 UROPORIIIMETHYLTRANSA-RXN)
PREDECESSORS - (DIMETHUROPORDEHYDROG-RXN RXN-8675)
PREDECESSORS - (SIROHEME-FERROCHELAT-RXN DIMETHUROPORDEHYDROG-RXN)
REACTION-LAYOUT - (RXN-8675 (:LEFT-PRIMARIES CPD-9038) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROSIROHYDROCHLORIN))
REACTION-LAYOUT - (UROPORIIIMETHYLTRANSA-RXN (:LEFT-PRIMARIES UROPORPHYRINOGEN-III) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9038))
REACTION-LAYOUT - (SIROHEME-FERROCHELAT-RXN (:LEFT-PRIMARIES SIROHYDROCHLORIN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SIROHEME))
REACTION-LAYOUT - (DIMETHUROPORDEHYDROG-RXN (:LEFT-PRIMARIES DIHYDROSIROHYDROCHLORIN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SIROHYDROCHLORIN))
REACTION-LIST - RXN-8675
REACTION-LIST - UROPORIIIMETHYLTRANSA-RXN
REACTION-LIST - SIROHEME-FERROCHELAT-RXN
REACTION-LIST - DIMETHUROPORDEHYDROG-RXN
//
UNIQUE-ID - PWY-5064
TYPES - Chlorophyll-a-Biosynthesis
COMMON-NAME - chlorophyll a biosynthesis II
CITATIONS - :EV-COMP-AINF:3497824356:liya
PATHWAY-LINKS - (CHLOROPHYLL-A PWY-5068)
PATHWAY-LINKS - (CHLOROPHYLLIDE-A CHLOROPHYLL-SYN)
PREDECESSORS - (RXN-7666 RXN-7665)
PREDECESSORS - (RXN-7665 RXN-7664)
PREDECESSORS - (RXN-7664 RXN-7663)
PREDECESSORS - (RXN-7663)
PRIMARIES - (RXN1F-88 (CHLOROPHYLL-A) (CHLOROPHYLL-B))
PRIMARIES - (RXN-7666 (CPD-7006) (CHLOROPHYLL-A))
PRIMARIES - (RXN-7665 (CPD-7004) (CPD-7006))
PRIMARIES - (RXN-7664 (CPD-7005) (CPD-7004))
PRIMARIES - (RXN-7663 (CHLOROPHYLLIDE-A) (CPD-7005))
REACTION-LAYOUT - (RXN-7666 (:LEFT-PRIMARIES CPD-7006) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CHLOROPHYLL-A))
REACTION-LAYOUT - (RXN-7665 (:LEFT-PRIMARIES CPD-7004) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7006))
REACTION-LAYOUT - (RXN-7663 (:LEFT-PRIMARIES CHLOROPHYLLIDE-A) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7005))
REACTION-LAYOUT - (RXN-7664 (:LEFT-PRIMARIES CPD-7005) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7004))
REACTION-LIST - RXN-7666
REACTION-LIST - RXN-7665
REACTION-LIST - RXN-7663
REACTION-LIST - RXN-7664
//
UNIQUE-ID - PWY-5086
TYPES - Chlorophyll-a-Biosynthesis
COMMON-NAME - chlorophyll a biosynthesis I
CITATIONS - :EV-COMP-AINF:3497824358:liya
PATHWAY-LINKS - (CHLOROPHYLL-A PWY-5068)
PATHWAY-LINKS - (PHYTYL-PYROPHOSPHATE PWY-5063)
PATHWAY-LINKS - (CHLOROPHYLLIDE-A CHLOROPHYLL-SYN)
PREDECESSORS - (RXN1F-66)
PRIMARIES - (RXN1F-66 (CHLOROPHYLLIDE-A PHYTYL-PYROPHOSPHATE) (CHLOROPHYLL-A))
REACTION-LAYOUT - (RXN1F-66 (:LEFT-PRIMARIES PHYTYL-PYROPHOSPHATE CHLOROPHYLLIDE-A) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CHLOROPHYLL-A))
REACTION-LIST - RXN1F-66
//
UNIQUE-ID - PWY-5068
TYPES - Chlorophyll-a-Biosynthesis
COMMON-NAME - chlorophyll cycle
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - SRI
CREDITS - |caspi|
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |tissier|
PATHWAY-LINKS - (PHYTYL-PYROPHOSPHATE PWY-5063)
PATHWAY-LINKS - (CHLOROPHYLLIDE-A CHLOROPHYLL-SYN)
PREDECESSORS - (RXN-7676 RXN1F-66)
PREDECESSORS - (RXN1F-66 RXN-7679)
PREDECESSORS - (RXN-7679 RXN-7678)
PREDECESSORS - (RXN-7677 RXN-7676)
PREDECESSORS - (RXN-7674 RXN-7677)
PREDECESSORS - (RXN-7678 RXN-7674)
PRIMARIES - (RXN-7674 (CPD-7014) (CHLOROPHYLL-B))
PRIMARIES - (RXN1F-66 (CHLOROPHYLL-A) (CHLOROPHYLLIDE-A))
PRIMARIES - (RXN-7677 NIL NIL)
PRIMARIES - (RXN-7676 NIL NIL)
REACTION-LAYOUT - (RXN-7679 (:LEFT-PRIMARIES CPD-7016) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CHLOROPHYLL-A))
REACTION-LAYOUT - (RXN-7678 (:LEFT-PRIMARIES CPD-7016) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CHLOROPHYLL-B))
REACTION-LAYOUT - (RXN-7677 (:LEFT-PRIMARIES CPD-7015) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7014))
REACTION-LAYOUT - (RXN-7676 (:LEFT-PRIMARIES CHLOROPHYLLIDE-A) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7015))
REACTION-LAYOUT - (RXN-7674 (:LEFT-PRIMARIES CPD-7014) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CHLOROPHYLL-B))
REACTION-LAYOUT - (RXN1F-66 (:LEFT-PRIMARIES CHLOROPHYLLIDE-A) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CHLOROPHYLL-A))
REACTION-LIST - RXN-7679
REACTION-LIST - RXN-7678
REACTION-LIST - RXN-7677
REACTION-LIST - RXN-7676
REACTION-LIST - RXN-7674
REACTION-LIST - RXN1F-66
SYNONYMS - chlorophyll b biosynthesis
//
UNIQUE-ID - CHLOROPHYLL-SYN
TYPES - Chlorophyllide-a-Biosynthesis
COMMON-NAME - chlorophyllide a biosynthesis I
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |caspi|
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |Mueller|
PATHWAY-LINKS - (UROPORPHYRINOGEN-III PWY-5188)
PATHWAY-LINKS - (CHLOROPHYLLIDE-A PWY-5068 PWY-5064 PWY-5086)
PATHWAY-LINKS - (PHYTYL-PYROPHOSPHATE PWY-5063)
PREDECESSORS - (RXN1F-10 RXN1F-72)
PREDECESSORS - (RXN-MG-PROTOPORPHYRIN-METHYLESTER-SYN RXN1F-20)
PREDECESSORS - (RXN1F-20 PROTOPORGENOXI-RXN)
PREDECESSORS - (UROGENDECARBOX-RXN)
PREDECESSORS - (RXN0-1461 UROGENDECARBOX-RXN)
PREDECESSORS - (PROTOPORGENOXI-RXN RXN0-1461)
PREDECESSORS - (RXN-5284 RXN-5283)
PREDECESSORS - (RXN-5283 RXN-5282)
PREDECESSORS - (RXN-5282 RXN-MG-PROTOPORPHYRIN-METHYLESTER-SYN)
PREDECESSORS - (RXN1F-72 RXN-5284)
PRIMARIES - (UROGENDECARBOX-RXN (UROPORPHYRINOGEN-III) (COPROPORPHYRINOGEN_III))
PRIMARIES - (UROGENIIISYN-RXN (HYDROXYMETHYLBILANE) (UROPORPHYRINOGEN-III))
PRIMARIES - (RXN-5284 (131-OXO-MAGNESIUM-PROTOPORPHYRIN-IX-13-M) (DIVINYL-PROTOCHLOROPHYLLIDE-A))
PRIMARIES - (RXN-5283 (13-HYDROXY-MAGNESIUM-PROTOPORP) (131-OXO-MAGNESIUM-PROTOPORPHYRIN-IX-13-M))
PRIMARIES - (RXN-5282 (MG-PROTOPORPHYRIN-MONOMETHYL-ESTER) (13-HYDROXY-MAGNESIUM-PROTOPORP))
PRIMARIES - (RXN1F-88 (CHLOROPHYLL-A) (CHLOROPHYLL-B))
PRIMARIES - (RXN1F-66 (CHLOROPHYLLIDE-A) (CHLOROPHYLL-A))
PRIMARIES - (RXN1F-10 (MONO-VINYL-PROTOCHLOROPHYLLIDE-A) (CHLOROPHYLLIDE-A))
PRIMARIES - (RXN1F-72 (DIVINYL-PROTOCHLOROPHYLLIDE-A) (MONO-VINYL-PROTOCHLOROPHYLLIDE-A))
PRIMARIES - (RXN1F-9 (MG-PROTOPORPHYRIN-MONOMETHYL-ESTER) (DIVINYL-PROTOCHLOROPHYLLIDE-A))
PRIMARIES - (RXN-MG-PROTOPORPHYRIN-METHYLESTER-SYN (MG-PROTOPORPHYRIN) (MG-PROTOPORPHYRIN-MONOMETHYL-ESTER))
PRIMARIES - (RXN1F-20 (PROTOPORPHYRIN_IX) (MG-PROTOPORPHYRIN))
PRIMARIES - (PROTOPORGENOXI-RXN (PROTOPORPHYRINOGEN) (PROTOPORPHYRIN_IX))
PRIMARIES - (RXN0-1461 (COPROPORPHYRINOGEN_III) (PROTOPORPHYRINOGEN))
PRIMARIES - (OHMETHYLBILANESYN-RXN (PORPHOBILINOGEN) (HYDROXYMETHYLBILANE))
PRIMARIES - (PORPHOBILSYNTH-RXN (5-AMINO-LEVULINATE) (PORPHOBILINOGEN))
PRIMARIES - (GSAAMINOTRANS-RXN (GLUTAMATE-1-SEMIALDEHYDE) (5-AMINO-LEVULINATE))
PRIMARIES - (GLUTRNAREDUCT-RXN (|Charged-GLT-tRNAs|) (GLUTAMATE-1-SEMIALDEHYDE))
PRIMARIES - (GLURS-RXN (GLT) (|Charged-GLT-tRNAs|))
REACTION-LAYOUT - (RXN-5282 (:LEFT-PRIMARIES MG-PROTOPORPHYRIN-MONOMETHYL-ESTER) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 13-HYDROXY-MAGNESIUM-PROTOPORP))
REACTION-LAYOUT - (RXN-5283 (:LEFT-PRIMARIES 13-HYDROXY-MAGNESIUM-PROTOPORP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 131-OXO-MAGNESIUM-PROTOPORPHYRIN-IX-13-M))
REACTION-LAYOUT - (RXN-5284 (:LEFT-PRIMARIES 131-OXO-MAGNESIUM-PROTOPORPHYRIN-IX-13-M) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIVINYL-PROTOCHLOROPHYLLIDE-A))
REACTION-LAYOUT - (RXN0-1461 (:LEFT-PRIMARIES COPROPORPHYRINOGEN_III) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PROTOPORPHYRINOGEN))
REACTION-LAYOUT - (RXN1F-10 (:LEFT-PRIMARIES CHLOROPHYLLIDE-A) (:DIRECTION :R2L) (:RIGHT-PRIMARIES MONO-VINYL-PROTOCHLOROPHYLLIDE-A))
REACTION-LAYOUT - (RXN1F-72 (:LEFT-PRIMARIES DIVINYL-PROTOCHLOROPHYLLIDE-A) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MONO-VINYL-PROTOCHLOROPHYLLIDE-A))
REACTION-LAYOUT - (RXN-MG-PROTOPORPHYRIN-METHYLESTER-SYN (:LEFT-PRIMARIES MG-PROTOPORPHYRIN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MG-PROTOPORPHYRIN-MONOMETHYL-ESTER))
REACTION-LAYOUT - (RXN1F-20 (:LEFT-PRIMARIES PROTOPORPHYRIN_IX) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MG-PROTOPORPHYRIN))
REACTION-LAYOUT - (UROGENDECARBOX-RXN (:LEFT-PRIMARIES UROPORPHYRINOGEN-III) (:DIRECTION :L2R) (:RIGHT-PRIMARIES COPROPORPHYRINOGEN_III))
REACTION-LAYOUT - (PROTOPORGENOXI-RXN (:LEFT-PRIMARIES PROTOPORPHYRINOGEN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PROTOPORPHYRIN_IX))
REACTION-LIST - RXN-5282
REACTION-LIST - RXN-5283
REACTION-LIST - RXN-5284
REACTION-LIST - RXN0-1461
REACTION-LIST - RXN1F-10
REACTION-LIST - RXN1F-72
REACTION-LIST - RXN-MG-PROTOPORPHYRIN-METHYLESTER-SYN
REACTION-LIST - RXN1F-20
REACTION-LIST - UROGENDECARBOX-RXN
REACTION-LIST - PROTOPORGENOXI-RXN
//
UNIQUE-ID - HEME-BIOSYNTHESIS-II
TYPES - HEME-SYN
COMMON-NAME - heme biosynthesis from uroporphyrinogen-III I
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - |caspi|
CREDITS - |fulcher|
CREDITS - SRI
CREDITS - |hying|
IN-PATHWAY - PWY-5918
PATHWAY-LINKS - (UROPORPHYRINOGEN-III PWY-5188)
PATHWAY-LINKS - (PROTOHEME HEMEOSYN-RXN)
PREDECESSORS - (PROTOPORGENOXI-RXN RXN0-1461)
PREDECESSORS - (RXN0-1461 UROGENDECARBOX-RXN)
PREDECESSORS - (PROTOHEMEFERROCHELAT-RXN PROTOPORGENOXI-RXN)
REACTION-LAYOUT - (RXN0-1461 (:LEFT-PRIMARIES COPROPORPHYRINOGEN_III) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PROTOPORPHYRINOGEN))
REACTION-LAYOUT - (PROTOHEMEFERROCHELAT-RXN (:LEFT-PRIMARIES PROTOPORPHYRIN_IX) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PROTOHEME))
REACTION-LAYOUT - (PROTOPORGENOXI-RXN (:LEFT-PRIMARIES PROTOPORPHYRINOGEN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PROTOPORPHYRIN_IX))
REACTION-LAYOUT - (UROGENDECARBOX-RXN (:LEFT-PRIMARIES UROPORPHYRINOGEN-III) (:DIRECTION :L2R) (:RIGHT-PRIMARIES COPROPORPHYRINOGEN_III))
REACTION-LIST - RXN0-1461
REACTION-LIST - PROTOHEMEFERROCHELAT-RXN
REACTION-LIST - PROTOPORGENOXI-RXN
REACTION-LIST - UROGENDECARBOX-RXN
SUPER-PATHWAYS - PWY-5918
//
UNIQUE-ID - PWY-5188
TYPES - Tetrapyrrole-Biosynthesis
COMMON-NAME - tetrapyrrole biosynthesis I
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |caspi|
IN-PATHWAY - PWY-5918
PATHWAY-LINKS - (UROPORPHYRINOGEN-III PWY-5194 CHLOROPHYLL-SYN)
PREDECESSORS - (UROGENIIISYN-RXN OHMETHYLBILANESYN-RXN)
PREDECESSORS - (OHMETHYLBILANESYN-RXN PORPHOBILSYNTH-RXN)
PREDECESSORS - (PORPHOBILSYNTH-RXN GSAAMINOTRANS-RXN)
PREDECESSORS - (GSAAMINOTRANS-RXN GLUTRNAREDUCT-RXN)
PREDECESSORS - (GLUTRNAREDUCT-RXN GLURS-RXN)
PREDECESSORS - (GLURS-RXN)
REACTION-LAYOUT - (GLURS-RXN (:LEFT-PRIMARIES GLT |GLT-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-GLT-tRNAs|))
REACTION-LAYOUT - (GLUTRNAREDUCT-RXN (:LEFT-PRIMARIES |GLT-tRNAs| GLUTAMATE-1-SEMIALDEHYDE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES |Charged-GLT-tRNAs|))
REACTION-LAYOUT - (GSAAMINOTRANS-RXN (:LEFT-PRIMARIES GLUTAMATE-1-SEMIALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-AMINO-LEVULINATE))
REACTION-LAYOUT - (PORPHOBILSYNTH-RXN (:LEFT-PRIMARIES 5-AMINO-LEVULINATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PORPHOBILINOGEN))
REACTION-LAYOUT - (OHMETHYLBILANESYN-RXN (:LEFT-PRIMARIES PORPHOBILINOGEN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HYDROXYMETHYLBILANE))
REACTION-LAYOUT - (UROGENIIISYN-RXN (:LEFT-PRIMARIES HYDROXYMETHYLBILANE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UROPORPHYRINOGEN-III))
REACTION-LIST - GLURS-RXN
REACTION-LIST - GLUTRNAREDUCT-RXN
REACTION-LIST - GSAAMINOTRANS-RXN
REACTION-LIST - PORPHOBILSYNTH-RXN
REACTION-LIST - OHMETHYLBILANESYN-RXN
REACTION-LIST - UROGENIIISYN-RXN
SUPER-PATHWAYS - PWY-5918
//
UNIQUE-ID - PWY-5783
TYPES - Polyprenyl-Biosynthesis
COMMON-NAME - octaprenyl diphosphate biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (FARNESYL-PP PWY-5123)
PREDECESSORS - (RXN-8992 TRANS-HEXAPRENYLTRANSTRANSFERASE-RXN)
PREDECESSORS - (TRANS-HEXAPRENYLTRANSTRANSFERASE-RXN TRANS-PENTAPRENYLTRANSFERASE-RXN)
PREDECESSORS - (FARNESYLTRANSTRANSFERASE-RXN)
PREDECESSORS - (TRANS-PENTAPRENYLTRANSFERASE-RXN RXN-8813)
PREDECESSORS - (RXN-8813 FARNESYLTRANSTRANSFERASE-RXN)
PRIMARIES - (FARNESYLTRANSTRANSFERASE-RXN (FARNESYL-PP) (GERANYLGERANYL-PP))
PRIMARIES - (FPPSYN-RXN (GERANYL-PP) (FARNESYL-PP))
PRIMARIES - (GPPSYN-RXN (CPD-4211) (GERANYL-PP))
PRIMARIES - (IPPISOM-RXN (DELTA3-ISOPENTENYL-PP) (CPD-2411))
REACTION-LAYOUT - (RXN-8992 (:LEFT-PRIMARIES ALL-TRANS-HEPTAPRENYL-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OCTAPRENYL-DIPHOSPHATE))
REACTION-LAYOUT - (TRANS-HEXAPRENYLTRANSTRANSFERASE-RXN (:LEFT-PRIMARIES ALL-TRANS-HEXAPRENYL-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALL-TRANS-HEPTAPRENYL-DIPHOSPHATE))
REACTION-LAYOUT - (TRANS-PENTAPRENYLTRANSFERASE-RXN (:LEFT-PRIMARIES ALL-TRANS-PENTAPRENYL-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALL-TRANS-HEXAPRENYL-DIPHOSPHATE))
REACTION-LAYOUT - (RXN-8813 (:LEFT-PRIMARIES GERANYLGERANYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALL-TRANS-PENTAPRENYL-DIPHOSPHATE))
REACTION-LAYOUT - (FARNESYLTRANSTRANSFERASE-RXN (:LEFT-PRIMARIES FARNESYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GERANYLGERANYL-PP))
REACTION-LIST - RXN-8992
REACTION-LIST - TRANS-HEXAPRENYLTRANSTRANSFERASE-RXN
REACTION-LIST - TRANS-PENTAPRENYLTRANSFERASE-RXN
REACTION-LIST - RXN-8813
REACTION-LIST - FARNESYLTRANSTRANSFERASE-RXN
//
UNIQUE-ID - HEXPPSYN-PWY
TYPES - Polyprenyl-Biosynthesis
COMMON-NAME - hexaprenyl diphosphate biosynthesis
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - O-16
CREDITS - |hong|
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (FARNESYL-PP PWY-5123)
PREDECESSORS - (FARNESYLTRANSTRANSFERASE-RXN)
PREDECESSORS - (TRANS-PENTAPRENYLTRANSFERASE-RXN RXN-8813)
PREDECESSORS - (RXN-8813 FARNESYLTRANSTRANSFERASE-RXN)
PRIMARIES - (FARNESYLTRANSTRANSFERASE-RXN (FARNESYL-PP) (GERANYLGERANYL-PP))
PRIMARIES - (FPPSYN-RXN (GERANYL-PP) (FARNESYL-PP))
PRIMARIES - (GPPSYN-RXN (CPD-4211) (GERANYL-PP))
PRIMARIES - (IPPISOM-RXN (DELTA3-ISOPENTENYL-PP) (CPD-2411))
REACTION-LAYOUT - (TRANS-PENTAPRENYLTRANSFERASE-RXN (:LEFT-PRIMARIES ALL-TRANS-PENTAPRENYL-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALL-TRANS-HEXAPRENYL-DIPHOSPHATE))
REACTION-LAYOUT - (RXN-8813 (:LEFT-PRIMARIES GERANYLGERANYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALL-TRANS-PENTAPRENYL-DIPHOSPHATE))
REACTION-LAYOUT - (FARNESYLTRANSTRANSFERASE-RXN (:LEFT-PRIMARIES FARNESYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GERANYLGERANYL-PP))
REACTION-LIST - TRANS-PENTAPRENYLTRANSFERASE-RXN
REACTION-LIST - RXN-8813
REACTION-LIST - FARNESYLTRANSTRANSFERASE-RXN
//
UNIQUE-ID - NONMEVIPP-PWY
TYPES - Polyprenyl-Biosynthesis
COMMON-NAME - methylerythritol phosphate pathway
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - O-18
CREDITS - |pellegrini-toole|
CREDITS - SRI
CREDITS - |shearer|
IN-PATHWAY - PWY-5121
PATHWAY-LINKS - (CPD-4211 PWY-5122)
PATHWAY-LINKS - (DELTA3-ISOPENTENYL-PP PWY-5122 (|Polyprenyl-Biosynthesis| . :OUTGOING))
PREDECESSORS - (2.7.7.60-RXN DXPREDISOM-RXN)
PREDECESSORS - (RXN0-884 RXN0-882)
PREDECESSORS - (DXPREDISOM-RXN DXS-RXN)
PREDECESSORS - (ISPH2-RXN RXN0-882)
PREDECESSORS - (2.7.1.148-RXN 2.7.7.60-RXN)
PREDECESSORS - (RXN0-302 2.7.1.148-RXN)
PREDECESSORS - (RXN0-882 RXN0-302)
PREDECESSORS - (IPPISOM-RXN ISPH2-RXN)
REACTION-LAYOUT - (IPPISOM-RXN (:LEFT-PRIMARIES DELTA3-ISOPENTENYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4211))
REACTION-LAYOUT - (2.7.7.60-RXN (:LEFT-PRIMARIES 2-C-METHYL-D-ERYTHRITOL-4-PHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 4-CYTIDINE-5-DIPHOSPHO-2-C))
REACTION-LAYOUT - (2.7.1.148-RXN (:LEFT-PRIMARIES 4-CYTIDINE-5-DIPHOSPHO-2-C) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-PHOSPHO-4-CYTIDINE-5-DIPHOSPHO-2-C-MET))
REACTION-LAYOUT - (ISPH2-RXN (:LEFT-PRIMARIES DELTA3-ISOPENTENYL-PP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES HYDROXY-METHYL-BUTENYL-DIP))
REACTION-LAYOUT - (RXN0-884 (:LEFT-PRIMARIES CPD-4211) (:DIRECTION :R2L) (:RIGHT-PRIMARIES HYDROXY-METHYL-BUTENYL-DIP))
REACTION-LAYOUT - (RXN0-882 (:LEFT-PRIMARIES HYDROXY-METHYL-BUTENYL-DIP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE))
REACTION-LAYOUT - (RXN0-302 (:LEFT-PRIMARIES 2-PHOSPHO-4-CYTIDINE-5-DIPHOSPHO-2-C-MET) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE))
REACTION-LAYOUT - (DXPREDISOM-RXN (:LEFT-PRIMARIES 2-C-METHYL-D-ERYTHRITOL-4-PHOSPHATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DEOXYXYLULOSE-5P))
REACTION-LAYOUT - (DXS-RXN (:LEFT-PRIMARIES GAP PYRUVATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DEOXYXYLULOSE-5P))
REACTION-LIST - IPPISOM-RXN
REACTION-LIST - 2.7.7.60-RXN
REACTION-LIST - 2.7.1.148-RXN
REACTION-LIST - ISPH2-RXN
REACTION-LIST - RXN0-884
REACTION-LIST - RXN0-882
REACTION-LIST - RXN0-302
REACTION-LIST - DXPREDISOM-RXN
REACTION-LIST - DXS-RXN
SUPER-PATHWAYS - PWY-5121
SYNONYMS - nonmevalonate isopentenyl diphosphate biosynthesis
SYNONYMS - methylerythritol phosphate degradation
SYNONYMS - MEP degradation
SYNONYMS - deoxyxylulose phosphate pathway
SYNONYMS - DXP pathway
SYNONYMS - Rohmer pathway
SYNONYMS - isopentenyl diphosphate biosynthesis -- mevalonate-independent
SYNONYMS - nonmevalonate isoprenoid pathway
SYNONYMS - MEP pathway
//
UNIQUE-ID - PWY-5122
TYPES - Polyprenyl-Biosynthesis
COMMON-NAME - geranyldiphosphate biosynthesis
CITATIONS - :EV-COMP-AINF:3497824357:liya
PATHWAY-LINKS - (DELTA3-ISOPENTENYL-PP NONMEVIPP-PWY)
PATHWAY-LINKS - (GERANYL-PP PWY-5829)
PREDECESSORS - (GPPSYN-RXN)
PRIMARIES - (GPPSYN-RXN (DELTA3-ISOPENTENYL-PP) (GERANYL-PP))
REACTION-LAYOUT - (GPPSYN-RXN (:LEFT-PRIMARIES DELTA3-ISOPENTENYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GERANYL-PP))
REACTION-LIST - GPPSYN-RXN
SYNONYMS - GPP biosynthesis
//
UNIQUE-ID - PWY-5805
TYPES - Polyprenyl-Biosynthesis
COMMON-NAME - nonaprenyl diphosphate biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (SOLANESYL-PYROPHOSPHATE PWY-5871)
PATHWAY-LINKS - (FARNESYL-PP PWY-5123)
PREDECESSORS - (TRANS-OCTAPRENYLTRANSTRANSFERASE-RXN RXN-8992)
PREDECESSORS - (RXN-8992 TRANS-HEXAPRENYLTRANSTRANSFERASE-RXN)
PREDECESSORS - (TRANS-HEXAPRENYLTRANSTRANSFERASE-RXN TRANS-PENTAPRENYLTRANSFERASE-RXN)
PREDECESSORS - (FARNESYLTRANSTRANSFERASE-RXN)
PREDECESSORS - (TRANS-PENTAPRENYLTRANSFERASE-RXN RXN-8813)
PREDECESSORS - (RXN-8813 FARNESYLTRANSTRANSFERASE-RXN)
PRIMARIES - (FARNESYLTRANSTRANSFERASE-RXN (FARNESYL-PP) (GERANYLGERANYL-PP))
PRIMARIES - (FPPSYN-RXN (GERANYL-PP) (FARNESYL-PP))
PRIMARIES - (GPPSYN-RXN (CPD-4211) (GERANYL-PP))
PRIMARIES - (IPPISOM-RXN (DELTA3-ISOPENTENYL-PP) (CPD-2411))
REACTION-LAYOUT - (TRANS-OCTAPRENYLTRANSTRANSFERASE-RXN (:LEFT-PRIMARIES OCTAPRENYL-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SOLANESYL-PYROPHOSPHATE))
REACTION-LAYOUT - (RXN-8992 (:LEFT-PRIMARIES ALL-TRANS-HEPTAPRENYL-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OCTAPRENYL-DIPHOSPHATE))
REACTION-LAYOUT - (TRANS-HEXAPRENYLTRANSTRANSFERASE-RXN (:LEFT-PRIMARIES ALL-TRANS-HEXAPRENYL-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALL-TRANS-HEPTAPRENYL-DIPHOSPHATE))
REACTION-LAYOUT - (TRANS-PENTAPRENYLTRANSFERASE-RXN (:LEFT-PRIMARIES ALL-TRANS-PENTAPRENYL-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALL-TRANS-HEXAPRENYL-DIPHOSPHATE))
REACTION-LAYOUT - (RXN-8813 (:LEFT-PRIMARIES GERANYLGERANYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALL-TRANS-PENTAPRENYL-DIPHOSPHATE))
REACTION-LAYOUT - (FARNESYLTRANSTRANSFERASE-RXN (:LEFT-PRIMARIES FARNESYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GERANYLGERANYL-PP))
REACTION-LIST - TRANS-OCTAPRENYLTRANSTRANSFERASE-RXN
REACTION-LIST - RXN-8992
REACTION-LIST - TRANS-HEXAPRENYLTRANSTRANSFERASE-RXN
REACTION-LIST - TRANS-PENTAPRENYLTRANSFERASE-RXN
REACTION-LIST - RXN-8813
REACTION-LIST - FARNESYLTRANSTRANSFERASE-RXN
SYNONYMS - solanesyl diphosphate biosynthesis
SYNONYMS - solanesyl pyrophosphate biosynthesis
//
UNIQUE-ID - PWY-5807
TYPES - Polyprenyl-Biosynthesis
COMMON-NAME - heptaprenyl diphosphate biosynthesis
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (FARNESYL-PP PWY-5123)
PREDECESSORS - (TRANS-HEXAPRENYLTRANSTRANSFERASE-RXN TRANS-PENTAPRENYLTRANSFERASE-RXN)
PREDECESSORS - (FARNESYLTRANSTRANSFERASE-RXN)
PREDECESSORS - (TRANS-PENTAPRENYLTRANSFERASE-RXN RXN-8813)
PREDECESSORS - (RXN-8813 FARNESYLTRANSTRANSFERASE-RXN)
PRIMARIES - (FARNESYLTRANSTRANSFERASE-RXN (FARNESYL-PP) (GERANYLGERANYL-PP))
PRIMARIES - (FPPSYN-RXN (GERANYL-PP) (FARNESYL-PP))
PRIMARIES - (GPPSYN-RXN (CPD-4211) (GERANYL-PP))
PRIMARIES - (IPPISOM-RXN (DELTA3-ISOPENTENYL-PP) (CPD-2411))
REACTION-LAYOUT - (TRANS-HEXAPRENYLTRANSTRANSFERASE-RXN (:LEFT-PRIMARIES ALL-TRANS-HEXAPRENYL-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALL-TRANS-HEPTAPRENYL-DIPHOSPHATE))
REACTION-LAYOUT - (TRANS-PENTAPRENYLTRANSFERASE-RXN (:LEFT-PRIMARIES ALL-TRANS-PENTAPRENYL-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALL-TRANS-HEXAPRENYL-DIPHOSPHATE))
REACTION-LAYOUT - (RXN-8813 (:LEFT-PRIMARIES GERANYLGERANYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALL-TRANS-PENTAPRENYL-DIPHOSPHATE))
REACTION-LAYOUT - (FARNESYLTRANSTRANSFERASE-RXN (:LEFT-PRIMARIES FARNESYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GERANYLGERANYL-PP))
REACTION-LIST - TRANS-HEXAPRENYLTRANSTRANSFERASE-RXN
REACTION-LIST - TRANS-PENTAPRENYLTRANSFERASE-RXN
REACTION-LIST - RXN-8813
REACTION-LIST - FARNESYLTRANSTRANSFERASE-RXN
//
UNIQUE-ID - PWY-5123
TYPES - All-Trans-Farnesyl-PP-Biosynthesis
COMMON-NAME - trans,trans-farnesyl diphosphate biosynthesis
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |tissier|
IN-PATHWAY - PWY-5121
IN-PATHWAY - PWY-5910
PATHWAY-LINKS - (FARNESYL-PP PWY-2541 PWY-5670)
PATHWAY-LINKS - (DELTA3-ISOPENTENYL-PP PWY-922 NONMEVIPP-PWY)
PREDECESSORS - (GPPSYN-RXN IPPISOM-RXN)
PREDECESSORS - (FPPSYN-RXN GPPSYN-RXN)
PRIMARIES - (GPPSYN-RXN (CPD-4211) (GERANYL-PP))
PRIMARIES - (FPPSYN-RXN (GERANYL-PP) (FARNESYL-PP))
REACTION-LAYOUT - (IPPISOM-RXN (:LEFT-PRIMARIES DELTA3-ISOPENTENYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4211))
REACTION-LAYOUT - (FPPSYN-RXN (:LEFT-PRIMARIES DELTA3-ISOPENTENYL-PP GERANYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FARNESYL-PP))
REACTION-LAYOUT - (GPPSYN-RXN (:LEFT-PRIMARIES DELTA3-ISOPENTENYL-PP CPD-4211) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GERANYL-PP))
REACTION-LIST - IPPISOM-RXN
REACTION-LIST - FPPSYN-RXN
REACTION-LIST - GPPSYN-RXN
SUPER-PATHWAYS - PWY-5121
SUPER-PATHWAYS - PWY-5910
SYNONYMS - FPP biosynthesis
SYNONYMS - trans,trans-farnesyl diphosphate biosynthesis
//
UNIQUE-ID - PWY-5120
TYPES - GGPP-Biosynthesis
COMMON-NAME - geranylgeranyldiphosphate biosynthesis
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - SRI
CREDITS - |caspi|
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |tissier|
IN-PATHWAY - PWY-5121
IN-PATHWAY - PWY-5910
PATHWAY-LINKS - (FARNESYL-PP PWY-5123)
PATHWAY-LINKS - (GERANYLGERANYL-PP PWY-5032 PWY-5063)
PREDECESSORS - (FARNESYLTRANSTRANSFERASE-RXN)
PRIMARIES - (FARNESYLTRANSTRANSFERASE-RXN (FARNESYL-PP) (GERANYLGERANYL-PP))
REACTION-LAYOUT - (FARNESYLTRANSTRANSFERASE-RXN (:LEFT-PRIMARIES FARNESYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GERANYLGERANYL-PP))
REACTION-LIST - FARNESYLTRANSTRANSFERASE-RXN
SUPER-PATHWAYS - PWY-5121
SUPER-PATHWAYS - PWY-5910
SYNONYMS - GGPP biosynthesis
//
UNIQUE-ID - PWY-5083
TYPES - NAD-Metabolism
COMMON-NAME - NAD/NADH phosphorylation and dephosphorylation
CITATIONS - :EV-COMP-AINF:3497824359:liya
CREDITS - SRI
CREDITS - |caspi|
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |hartmut|
PATHWAY-LINKS - (NAD PYRIDNUCSYN-PWY)
PREDECESSORS - (NADH-KINASE-RXN RXN-7703)
PREDECESSORS - (RXN-7703 NADH-KINASE-RXN)
PREDECESSORS - (RXN-7703 NADH-DEHYDROG-A-RXN)
PREDECESSORS - (NADH-KINASE-RXN NADH-DEHYDROG-A-RXN)
PREDECESSORS - (NADH-DEHYDROG-A-RXN NADPPHOSPHAT-RXN)
PREDECESSORS - (NAD-KIN-RXN PYRNUTRANSHYDROGEN-RXN)
PREDECESSORS - (NAD-KIN-RXN NADPPHOSPHAT-RXN)
PREDECESSORS - (PYRNUTRANSHYDROGEN-RXN NADPPHOSPHAT-RXN)
PREDECESSORS - (NADPPHOSPHAT-RXN PYRNUTRANSHYDROGEN-RXN)
PREDECESSORS - (NADPPHOSPHAT-RXN NAD-KIN-RXN)
PRIMARIES - (NADH-DEHYDROG-A-RXN (NAD) (NADH))
PRIMARIES - (RXN-7703 (NADPH) (NADH))
PRIMARIES - (NADH-KINASE-RXN (NADH) (NADPH))
PRIMARIES - (NAD-KIN-RXN (NAD) (NADP))
PRIMARIES - (NADPPHOSPHAT-RXN (NADP) (NAD))
PRIMARIES - (PYRNUTRANSHYDROGEN-RXN (NAD) (NADP))
REACTION-LAYOUT - (RXN-7703 (:LEFT-PRIMARIES NADPH) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NADH))
REACTION-LAYOUT - (NADH-KINASE-RXN (:LEFT-PRIMARIES NADH) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NADPH))
REACTION-LAYOUT - (NADH-DEHYDROG-A-RXN (:LEFT-PRIMARIES NADH) (:DIRECTION :R2L) (:RIGHT-PRIMARIES NAD))
REACTION-LAYOUT - (NAD-KIN-RXN (:LEFT-PRIMARIES NAD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NADP))
REACTION-LAYOUT - (NADPPHOSPHAT-RXN (:LEFT-PRIMARIES NADP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NAD))
REACTION-LAYOUT - (PYRNUTRANSHYDROGEN-RXN (:LEFT-PRIMARIES NADPH NAD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NADP NADH))
REACTION-LIST - RXN-7703
REACTION-LIST - NADH-KINASE-RXN
REACTION-LIST - NADH-DEHYDROG-A-RXN
REACTION-LIST - NAD-KIN-RXN
REACTION-LIST - NADPPHOSPHAT-RXN
REACTION-LIST - PYRNUTRANSHYDROGEN-RXN
//
UNIQUE-ID - PWY-5381
TYPES - NAD-Metabolism
COMMON-NAME - pyridine nucleotide cycling (plants)
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |hartmut|
PATHWAY-LINKS - (NICOTINATE_NUCLEOTIDE PYRIDNUCSYN-PWY)
PREDECESSORS - (NADNUCLEOSID-RXN)
PREDECESSORS - (NMNNUCLEOSID-RXN NADPYROPHOSPHAT-RXN)
PREDECESSORS - (RXN-8441 RXN-5841)
PREDECESSORS - (NADPYROPHOSPHAT-RXN RXN-5841)
PREDECESSORS - (RXN-5841 NADPYROPHOSPHAT-RXN)
PREDECESSORS - (NICOTINAMID-RXN NADNUCLEOSID-RXN)
PREDECESSORS - (NICOTINAMID-RXN NMNNUCLEOSID-RXN)
PREDECESSORS - (NICOTINAMID-RXN RXN-8441)
PREDECESSORS - (RXN-8442 NICOTINAMID-RXN)
PREDECESSORS - (RXN-8443 RXN-8442)
PREDECESSORS - (NICOTINATEPRIBOSYLTRANS-RXN NICOTINAMID-RXN)
PREDECESSORS - (NICONUCADENYLYLTRAN-RXN RXN-8443)
PREDECESSORS - (NICONUCADENYLYLTRAN-RXN NICOTINATEPRIBOSYLTRANS-RXN)
PREDECESSORS - (NAD-SYNTH-GLN-RXN NICONUCADENYLYLTRAN-RXN)
PREDECESSORS - (NADPYROPHOSPHAT-RXN NAD-SYNTH-GLN-RXN)
PREDECESSORS - (RXN-8444 NICOTINATEPRIBOSYLTRANS-RXN)
PREDECESSORS - (RXN-8444 RXN-8443)
PREDECESSORS - (RXN-8442 RXN-8444)
PREDECESSORS - (NICOTINATEPRIBOSYLTRANS-RXN RXN-8444)
PRIMARIES - (RXN-8444 (NICOTINATE_NUCLEOTIDE) (NIACINE))
PRIMARIES - (NAD-SYNTH-GLN-RXN (DEAMIDO-NAD) (NAD))
PRIMARIES - (NICONUCADENYLYLTRAN-RXN (NICOTINATE_NUCLEOTIDE) (DEAMIDO-NAD))
PRIMARIES - (NICOTINATEPRIBOSYLTRANS-RXN (NIACINE) (NICOTINATE_NUCLEOTIDE))
PRIMARIES - (RXN-8443 (CPD-8259) (NICOTINATE_NUCLEOTIDE))
PRIMARIES - (RXN-8442 (NIACINE) (CPD-8259))
PRIMARIES - (NICOTINAMID-RXN (NIACINAMIDE) (NIACINE))
PRIMARIES - (RXN-8441 (NICOTINAMIDE_RIBOSE) (NIACINAMIDE))
PRIMARIES - (RXN-5841 (NICOTINAMIDE_NUCLEOTIDE) (NICOTINAMIDE_RIBOSE))
PRIMARIES - (NMNNUCLEOSID-RXN (NICOTINAMIDE_NUCLEOTIDE) (NIACINAMIDE))
PRIMARIES - (NADNUCLEOSID-RXN (NAD) (NIACINAMIDE))
PRIMARIES - (NADPYROPHOSPHAT-RXN (NAD) (NICOTINAMIDE_NUCLEOTIDE))
REACTION-LAYOUT - (RXN-8444 (:LEFT-PRIMARIES NICOTINATE_NUCLEOTIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NIACINE))
REACTION-LAYOUT - (NAD-SYNTH-GLN-RXN (:LEFT-PRIMARIES DEAMIDO-NAD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NAD))
REACTION-LAYOUT - (NICONUCADENYLYLTRAN-RXN (:LEFT-PRIMARIES NICOTINATE_NUCLEOTIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DEAMIDO-NAD))
REACTION-LAYOUT - (NICOTINATEPRIBOSYLTRANS-RXN (:LEFT-PRIMARIES NICOTINATE_NUCLEOTIDE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES NIACINE))
REACTION-LAYOUT - (RXN-8443 (:LEFT-PRIMARIES CPD-8259) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NICOTINATE_NUCLEOTIDE))
REACTION-LAYOUT - (RXN-8442 (:LEFT-PRIMARIES NIACINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8259))
REACTION-LAYOUT - (NICOTINAMID-RXN (:LEFT-PRIMARIES NIACINAMIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NIACINE))
REACTION-LAYOUT - (RXN-8441 (:LEFT-PRIMARIES NICOTINAMIDE_RIBOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NIACINAMIDE))
REACTION-LAYOUT - (RXN-5841 (:LEFT-PRIMARIES NICOTINAMIDE_NUCLEOTIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NICOTINAMIDE_RIBOSE))
REACTION-LAYOUT - (NMNNUCLEOSID-RXN (:LEFT-PRIMARIES NICOTINAMIDE_NUCLEOTIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NIACINAMIDE))
REACTION-LAYOUT - (NADPYROPHOSPHAT-RXN (:LEFT-PRIMARIES NAD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NICOTINAMIDE_NUCLEOTIDE))
REACTION-LIST - RXN-8444
REACTION-LIST - NAD-SYNTH-GLN-RXN
REACTION-LIST - NICONUCADENYLYLTRAN-RXN
REACTION-LIST - NICOTINATEPRIBOSYLTRANS-RXN
REACTION-LIST - RXN-8443
REACTION-LIST - RXN-8442
REACTION-LIST - NICOTINAMID-RXN
REACTION-LIST - RXN-8441
REACTION-LIST - RXN-5841
REACTION-LIST - NMNNUCLEOSID-RXN
REACTION-LIST - NADPYROPHOSPHAT-RXN
//
UNIQUE-ID - PYRIDNUCSYN-PWY
TYPES - NAD-SYN
COMMON-NAME - NAD biosynthesis I (from aspartate)
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |hartmut|
CREDITS - SRI
CREDITS - |caspi|
CREDITS - O-18
CREDITS - |riley|
PATHWAY-LINKS - (NICOTINATE_NUCLEOTIDE (PWY-5381 . :OUTGOING))
PATHWAY-LINKS - (NAD PWY-5083)
PREDECESSORS - (NAD-SYNTH-GLN-RXN NICONUCADENYLYLTRAN-RXN)
PREDECESSORS - (NAD-SYNTH-NH3-RXN NICONUCADENYLYLTRAN-RXN)
PREDECESSORS - (NICONUCADENYLYLTRAN-RXN QUINOPRIBOTRANS-RXN)
PREDECESSORS - (QUINOPRIBOTRANS-RXN QUINOLINATE-SYNTHA-RXN)
PREDECESSORS - (QUINOLINATE-SYNTHA-RXN L-ASPARTATE-OXID-RXN)
PREDECESSORS - (L-ASPARTATE-OXID-RXN)
REACTION-LAYOUT - (L-ASPARTATE-OXID-RXN (:LEFT-PRIMARIES L-ASPARTATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES IMINOASPARTATE))
REACTION-LAYOUT - (QUINOLINATE-SYNTHA-RXN (:LEFT-PRIMARIES IMINOASPARTATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES QUINOLINATE))
REACTION-LAYOUT - (QUINOPRIBOTRANS-RXN (:LEFT-PRIMARIES QUINOLINATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NICOTINATE_NUCLEOTIDE))
REACTION-LAYOUT - (NAD-SYNTH-NH3-RXN (:LEFT-PRIMARIES DEAMIDO-NAD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NAD))
REACTION-LAYOUT - (NAD-SYNTH-GLN-RXN (:LEFT-PRIMARIES DEAMIDO-NAD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NAD))
REACTION-LAYOUT - (NICONUCADENYLYLTRAN-RXN (:LEFT-PRIMARIES NICOTINATE_NUCLEOTIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DEAMIDO-NAD))
REACTION-LIST - L-ASPARTATE-OXID-RXN
REACTION-LIST - QUINOLINATE-SYNTHA-RXN
REACTION-LIST - QUINOPRIBOTRANS-RXN
REACTION-LIST - NAD-SYNTH-NH3-RXN
REACTION-LIST - NAD-SYNTH-GLN-RXN
REACTION-LIST - NICONUCADENYLYLTRAN-RXN
SYNONYMS - nicotinamide adenine dinucleotide biosynthesis
//
UNIQUE-ID - PWY3O-4106
TYPES - NAD-SYN
COMMON-NAME - NAD salvage pathway III
CREDITS - SRI
CREDITS - |caspi|
CREDITS - O-16
CREDITS - |krieger|
PREDECESSORS - (2.7.7.1-RXN RIBOSYLNICOTINAMIDE-KINASE-RXN)
PRIMARIES - (NADPYROPHOSPHAT-RXN (NAD) (NICOTINAMIDE_NUCLEOTIDE))
REACTION-LAYOUT - (RIBOSYLNICOTINAMIDE-KINASE-RXN (:LEFT-PRIMARIES NICOTINAMIDE_RIBOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NICOTINAMIDE_NUCLEOTIDE))
REACTION-LAYOUT - (2.7.7.1-RXN (:LEFT-PRIMARIES NICOTINAMIDE_NUCLEOTIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NAD))
REACTION-LIST - RIBOSYLNICOTINAMIDE-KINASE-RXN
REACTION-LIST - 2.7.7.1-RXN
SYNONYMS - nicotinamide riboside salvage pathway
SYNONYMS - nicotinamide adenine dinucleotide salvage
//
UNIQUE-ID - COA-PWY
TYPES - CoA-Biosynthesis
COMMON-NAME - coenzyme A biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - |keseler|
CREDITS - SRI
CREDITS - |arnaud|
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |hartmut|
IN-PATHWAY - PWY-4242
IN-PATHWAY - PWY-4221
PATHWAY-LINKS - (PANTOTHENATE PANTO-PWY PWY-3961)
PREDECESSORS - (P-PANTOCYSLIG-RXN PANTOTHENATE-KIN-RXN)
PREDECESSORS - (P-PANTOCYSDECARB-RXN P-PANTOCYSLIG-RXN)
PREDECESSORS - (PANTEPADENYLYLTRAN-RXN P-PANTOCYSDECARB-RXN)
PREDECESSORS - (DEPHOSPHOCOAKIN-RXN PANTEPADENYLYLTRAN-RXN)
REACTION-LAYOUT - (PANTOTHENATE-KIN-RXN (:LEFT-PRIMARIES PANTOTHENATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 4-P-PANTOTHENATE))
REACTION-LAYOUT - (P-PANTOCYSLIG-RXN (:LEFT-PRIMARIES 4-P-PANTOTHENATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES R-4-PHOSPHOPANTOTHENOYL-L-CYSTEINE))
REACTION-LAYOUT - (P-PANTOCYSDECARB-RXN (:LEFT-PRIMARIES R-4-PHOSPHOPANTOTHENOYL-L-CYSTEINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PANTETHEINE-P))
REACTION-LAYOUT - (DEPHOSPHOCOAKIN-RXN (:LEFT-PRIMARIES DEPHOSPHO-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CO-A))
REACTION-LAYOUT - (PANTEPADENYLYLTRAN-RXN (:LEFT-PRIMARIES PANTETHEINE-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DEPHOSPHO-COA))
REACTION-LIST - PANTOTHENATE-KIN-RXN
REACTION-LIST - P-PANTOCYSLIG-RXN
REACTION-LIST - P-PANTOCYSDECARB-RXN
REACTION-LIST - DEPHOSPHOCOAKIN-RXN
REACTION-LIST - PANTEPADENYLYLTRAN-RXN
SUPER-PATHWAYS - PWY-4242
SUPER-PATHWAYS - PWY-4221
SYNONYMS - CoA biosynthesis
//
UNIQUE-ID - PWY-1422
TYPES - Vitamin-Biosynthesis
TYPES - Quinone-Biosynthesis
COMMON-NAME - vitamin E biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |zhang|
PATHWAY-LINKS - (PHYTYL-PYROPHOSPHATE PWY-5063)
PATHWAY-LINKS - (P-HYDROXY-PHENYLPYRUVATE PWY-5886)
PREDECESSORS - (RXN-2562 RXN-2561)
PREDECESSORS - (TOCOPHEROL-O-METHYLTRANSFERASE-RXN RXN-2543)
PREDECESSORS - (RXN-2542 RXN-2541)
PREDECESSORS - (RXN-2541 4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN)
PREDECESSORS - (RXN-2543 RXN-2542)
PREDECESSORS - (RXN-2561 RXN-2541)
PRIMARIES - (RXN-2541 (PHYTYL-PYROPHOSPHATE HOMOGENTISATE) NIL)
REACTION-LAYOUT - (RXN-2562 (:LEFT-PRIMARIES DELTA-TOCOPHEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES BETA-TOCOPHEROL))
REACTION-LAYOUT - (RXN-2561 (:LEFT-PRIMARIES MPBQ) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DELTA-TOCOPHEROL))
REACTION-LAYOUT - (TOCOPHEROL-O-METHYLTRANSFERASE-RXN (:LEFT-PRIMARIES GAMA-TOCOPHEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALPHA-TOCOPHEROL))
REACTION-LAYOUT - (RXN-2543 (:LEFT-PRIMARIES DMPBQ) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GAMA-TOCOPHEROL))
REACTION-LAYOUT - (RXN-2542 (:LEFT-PRIMARIES MPBQ) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DMPBQ))
REACTION-LAYOUT - (RXN-2541 (:LEFT-PRIMARIES PHYTYL-PYROPHOSPHATE HOMOGENTISATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MPBQ))
REACTION-LAYOUT - (4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN (:LEFT-PRIMARIES P-HYDROXY-PHENYLPYRUVATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HOMOGENTISATE))
REACTION-LIST - RXN-2562
REACTION-LIST - RXN-2561
REACTION-LIST - TOCOPHEROL-O-METHYLTRANSFERASE-RXN
REACTION-LIST - RXN-2543
REACTION-LIST - RXN-2542
REACTION-LIST - RXN-2541
REACTION-LIST - 4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN
SYNONYMS - tocopherol biosynthesis
//
UNIQUE-ID - PWY-5872
TYPES - Ubiquinone-Biosynthesis
COMMON-NAME - ubiquinone-10 biosynthesis (eukaryotic)
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (|4-hydroxybenzoate| PWY-5754)
PREDECESSORS - (RXN-9348 RXN-9237)
PREDECESSORS - (RXN-9234 RXN-9285)
PREDECESSORS - (RXN-9285 RXN-9282)
PREDECESSORS - (RXN-9282 RXN-9279)
PREDECESSORS - (RXN-9279 RXN-9230)
PREDECESSORS - (RXN-9237 RXN-9236)
PREDECESSORS - (RXN-9236 RXN-9235)
PREDECESSORS - (RXN-9235 RXN-9234)
REACTION-LAYOUT - (RXN-9348 (:LEFT-PRIMARIES CPD-9958) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UBIQUINONE-10))
REACTION-LAYOUT - (RXN-9285 (:LEFT-PRIMARIES CPD-9897) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9865))
REACTION-LAYOUT - (RXN-9282 (:LEFT-PRIMARIES CPD-9895) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9897))
REACTION-LAYOUT - (RXN-9279 (:LEFT-PRIMARIES CPD-9864) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9895))
REACTION-LAYOUT - (RXN-9230 (:LEFT-PRIMARIES |4-hydroxybenzoate|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9864))
REACTION-LAYOUT - (RXN-9237 (:LEFT-PRIMARIES CPD-9873) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9958))
REACTION-LAYOUT - (RXN-9236 (:LEFT-PRIMARIES CPD-9871) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9873))
REACTION-LAYOUT - (RXN-9235 (:LEFT-PRIMARIES CPD-9869) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9871))
REACTION-LAYOUT - (RXN-9234 (:LEFT-PRIMARIES CPD-9865) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9869))
REACTION-LIST - RXN-9348
REACTION-LIST - RXN-9285
REACTION-LIST - RXN-9282
REACTION-LIST - RXN-9279
REACTION-LIST - RXN-9230
REACTION-LIST - RXN-9237
REACTION-LIST - RXN-9236
REACTION-LIST - RXN-9235
REACTION-LIST - RXN-9234
SYNONYMS - Q10 biosynthesis
//
UNIQUE-ID - PWY-5871
TYPES - Ubiquinone-Biosynthesis
COMMON-NAME - ubiquinone-9 biosynthesis (eukaryotic)
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (SOLANESYL-PYROPHOSPHATE PWY-5805)
PATHWAY-LINKS - (|4-hydroxybenzoate| PWY-5754)
PREDECESSORS - (RXN-9347 2.1.1.64-RXN)
PREDECESSORS - (RXN-9241 RXN-9284)
PREDECESSORS - (RXN-9284 RXN-9281)
PREDECESSORS - (RXN-9281 RXN-9278)
PREDECESSORS - (RXN-9278 2.5.1.39-RXN)
PREDECESSORS - (2.1.1.64-RXN RXN-9243)
PREDECESSORS - (RXN-9243 RXN-9242)
PREDECESSORS - (RXN-9242 RXN-9241)
REACTION-LAYOUT - (RXN-9347 (:LEFT-PRIMARIES CPD-9957) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UBIQUINONE-9))
REACTION-LAYOUT - (RXN-9284 (:LEFT-PRIMARIES CPD-9898) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9866))
REACTION-LAYOUT - (RXN-9281 (:LEFT-PRIMARIES CPD-9896) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9898))
REACTION-LAYOUT - (RXN-9278 (:LEFT-PRIMARIES NONAPRENYL-4-HYDROXYBENZOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9896))
REACTION-LAYOUT - (RXN-9243 (:LEFT-PRIMARIES CPD-9872) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7158))
REACTION-LAYOUT - (RXN-9242 (:LEFT-PRIMARIES CPD-9870) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9872))
REACTION-LAYOUT - (2.1.1.64-RXN (:LEFT-PRIMARIES CPD-7158) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9957))
REACTION-LAYOUT - (RXN-9241 (:LEFT-PRIMARIES CPD-9866) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9870))
REACTION-LAYOUT - (2.5.1.39-RXN (:LEFT-PRIMARIES |4-hydroxybenzoate| SOLANESYL-PYROPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NONAPRENYL-4-HYDROXYBENZOATE))
REACTION-LIST - RXN-9347
REACTION-LIST - RXN-9284
REACTION-LIST - RXN-9281
REACTION-LIST - RXN-9278
REACTION-LIST - RXN-9243
REACTION-LIST - RXN-9242
REACTION-LIST - 2.1.1.64-RXN
REACTION-LIST - RXN-9241
REACTION-LIST - 2.5.1.39-RXN
SYNONYMS - Q9 biosynthesis
//
UNIQUE-ID - GLUTATHIONESYN-PWY
TYPES - Reductants
COMMON-NAME - glutathione biosynthesis
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |hartmut|
IN-PATHWAY - PWY-4041
PREDECESSORS - (GLUTCYSLIG-RXN)
PREDECESSORS - (GLUTATHIONE-SYN-RXN GLUTCYSLIG-RXN)
REACTION-LAYOUT - (GLUTATHIONE-SYN-RXN (:LEFT-PRIMARIES L-GAMMA-GLUTAMYLCYSTEINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLUTATHIONE))
REACTION-LAYOUT - (GLUTCYSLIG-RXN (:LEFT-PRIMARIES GLT CYS) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-GAMMA-GLUTAMYLCYSTEINE))
REACTION-LIST - GLUTATHIONE-SYN-RXN
REACTION-LIST - GLUTCYSLIG-RXN
SUPER-PATHWAYS - PWY-4041
//
UNIQUE-ID - PWY-4081
TYPES - Reductants
COMMON-NAME - glutathione redox reactions I
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - SRI
CREDITS - |caspi|
PREDECESSORS - (GLUTATHIONE-REDUCT-NADPH-RXN GLUTATHIONE-PEROXIDASE-RXN)
PREDECESSORS - (GLUTATHIONE-REDUCT-NADPH-RXN 1.11.1.12-RXN)
PREDECESSORS - (GLUTATHIONE-PEROXIDASE-RXN GLUTATHIONE-REDUCT-NADPH-RXN)
PREDECESSORS - (1.11.1.12-RXN GLUTATHIONE-REDUCT-NADPH-RXN)
PRIMARIES - (GLUTATHIONE-REDUCT-NADPH-RXN (OXIDIZED-GLUTATHIONE) (GLUTATHIONE))
PRIMARIES - (GLUTATHIONE-PEROXIDASE-RXN (GLUTATHIONE) (OXIDIZED-GLUTATHIONE))
PRIMARIES - (1.11.1.12-RXN (GLUTATHIONE) (OXIDIZED-GLUTATHIONE))
REACTION-LAYOUT - (GLUTATHIONE-REDUCT-NADPH-RXN (:LEFT-PRIMARIES GLUTATHIONE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES OXIDIZED-GLUTATHIONE))
REACTION-LAYOUT - (1.11.1.12-RXN (:LEFT-PRIMARIES GLUTATHIONE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OXIDIZED-GLUTATHIONE))
REACTION-LAYOUT - (GLUTATHIONE-PEROXIDASE-RXN (:LEFT-PRIMARIES GLUTATHIONE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OXIDIZED-GLUTATHIONE))
REACTION-LIST - GLUTATHIONE-REDUCT-NADPH-RXN
REACTION-LIST - 1.11.1.12-RXN
REACTION-LIST - GLUTATHIONE-PEROXIDASE-RXN
//
UNIQUE-ID - THIOREDOX-PWY
TYPES - Reductants
COMMON-NAME - thioredoxin pathway
CITATIONS - :EV-COMP-AINF:3497824359:liya
CREDITS - O-18
CREDITS - |riley|
PREDECESSORS - (THIOREDOXIN-REDUCT-NADPH-RXN THIOREDOXIN-RXN)
PREDECESSORS - (THIOREDOXIN-RXN THIOREDOXIN-REDUCT-NADPH-RXN)
PRIMARIES - (THIOREDOXIN-REDUCT-NADPH-RXN (|Red-Thioredoxin|) (|Ox-Thioredoxin|))
REACTION-LAYOUT - (THIOREDOXIN-RXN (:LEFT-PRIMARIES |Ox-Thioredoxin|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Red-Thioredoxin|))
REACTION-LAYOUT - (THIOREDOXIN-REDUCT-NADPH-RXN (:LEFT-PRIMARIES |Red-Thioredoxin|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Ox-Thioredoxin|))
REACTION-LIST - THIOREDOXIN-RXN
REACTION-LIST - THIOREDOXIN-REDUCT-NADPH-RXN
//
UNIQUE-ID - GLUT-REDOX-PWY
TYPES - Reductants
COMMON-NAME - glutathione redox reactions II
CITATIONS - :EV-COMP-AINF:3497824359:liya
CREDITS - SRI
CREDITS - |caspi|
CREDITS - O-18
CREDITS - |riley|
PREDECESSORS - (GLUTATHIONE-REDUCT-NADPH-RXN PRODISULFREDUCT-A-RXN)
PREDECESSORS - (PRODISULFREDUCT-A-RXN GLUTATHIONE-REDUCT-NADPH-RXN)
PRIMARIES - (PRODISULFREDUCT-A-RXN (GLUTATHIONE) (OXIDIZED-GLUTATHIONE))
PRIMARIES - (GLUTATHIONE-REDUCT-NADPH-RXN (OXIDIZED-GLUTATHIONE) (GLUTATHIONE))
REACTION-LAYOUT - (GLUTATHIONE-REDUCT-NADPH-RXN (:LEFT-PRIMARIES GLUTATHIONE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES OXIDIZED-GLUTATHIONE))
REACTION-LAYOUT - (PRODISULFREDUCT-A-RXN (:LEFT-PRIMARIES GLUTATHIONE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OXIDIZED-GLUTATHIONE))
REACTION-LIST - GLUTATHIONE-REDUCT-NADPH-RXN
REACTION-LIST - PRODISULFREDUCT-A-RXN
//
UNIQUE-ID - PWY0-501
TYPES - Lipoate-Biosynthesis
COMMON-NAME - lipoate biosynthesis and incorporation I
CITATIONS - :EV-COMP-AINF:3497824359:liya
CREDITS - |caspi|
CREDITS - SRI
CREDITS - |arnaud|
PREDECESSORS - (RXN0-947 RXN-5741)
PREDECESSORS - (RXN0-949 RXN0-947)
PRIMARIES - (RXN0-949 (|Octanoylated-domains|) (|Lipoylated-domains|))
PRIMARIES - (RXN-5741 (CPD-195) (OCTANOYL-ACP))
REACTION-LAYOUT - (RXN-5741 (:LEFT-PRIMARIES CPD-195) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Octanoyl-ACPs|))
REACTION-LAYOUT - (RXN0-947 (:LEFT-PRIMARIES |Octanoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Octanoylated-domains|))
REACTION-LAYOUT - (RXN0-949 (:LEFT-PRIMARIES |Octanoylated-domains|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Lipoylated-domains|))
REACTION-LIST - RXN-5741
REACTION-LIST - RXN0-947
REACTION-LIST - RXN0-949
//
UNIQUE-ID - PWY-3701
TYPES - BIOTIN-SYN
COMMON-NAME - biotin biosynthesis II
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |hartmut|
PREDECESSORS - (RXN-5985 RXN-5984)
PREDECESSORS - (RXN-5984 DETHIOBIOTIN-SYN-RXN)
PREDECESSORS - (DETHIOBIOTIN-SYN-RXN DAPASYN-RXN)
PREDECESSORS - (DAPASYN-RXN 7KAPSYN-RXN)
PRIMARIES - (RXN-5985 (CPD-5662) (BIOTIN))
PRIMARIES - (RXN-5984 (DETHIOBIOTIN) (CPD-5662))
PRIMARIES - (DETHIOBIOTIN-SYN-RXN (DIAMINONONANOATE) (DETHIOBIOTIN))
PRIMARIES - (DAPASYN-RXN (8-AMINO-7-OXONONANOATE) (DIAMINONONANOATE))
REACTION-LAYOUT - (RXN-5985 (:LEFT-PRIMARIES CPD-5662) (:DIRECTION :L2R) (:RIGHT-PRIMARIES BIOTIN))
REACTION-LAYOUT - (RXN-5984 (:LEFT-PRIMARIES DETHIOBIOTIN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-5662))
REACTION-LAYOUT - (DETHIOBIOTIN-SYN-RXN (:LEFT-PRIMARIES DIAMINONONANOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DETHIOBIOTIN))
REACTION-LAYOUT - (DAPASYN-RXN (:LEFT-PRIMARIES 8-AMINO-7-OXONONANOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIAMINONONANOATE))
REACTION-LAYOUT - (7KAPSYN-RXN (:LEFT-PRIMARIES L-ALPHA-ALANINE CPD-558) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 8-AMINO-7-OXONONANOATE))
REACTION-LIST - RXN-5985
REACTION-LIST - RXN-5984
REACTION-LIST - DETHIOBIOTIN-SYN-RXN
REACTION-LIST - DAPASYN-RXN
REACTION-LIST - 7KAPSYN-RXN
SYNONYMS - vitamin H biosynthesis
//
UNIQUE-ID - PYRIDOXSYN-PWY
TYPES - Vitamin-B6-Biosynthesis
COMMON-NAME - pyridoxal 5'-phosphate biosynthesis
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - O-18
CREDITS - |riley|
IN-PATHWAY - PWY0-845
PREDECESSORS - (PDXJ-RXN RXN-8447)
PREDECESSORS - (RXN-8447 1.1.1.262-RXN)
PREDECESSORS - (1.1.1.262-RXN PSERTRANSAMPYR-RXN)
PREDECESSORS - (PNPOXI-RXN PDXJ-RXN)
PREDECESSORS - (ERYTH4PDEHYDROG-RXN)
PREDECESSORS - (ERYTHRON4PDEHYDROG-RXN ERYTH4PDEHYDROG-RXN)
PREDECESSORS - (PSERTRANSAMPYR-RXN ERYTHRON4PDEHYDROG-RXN)
PREDECESSORS - (PDXJ-RXN DXS-RXN)
PRIMARIES - (PDXJ-RXN (DEOXYXYLULOSE-5P 1-AMINO-PROPAN-2-ONE-3-PHOSPHATE) NIL)
PRIMARIES - (RXN-8447 (2-AMINO-3-OXO-4-PHOSPHONOOXYBUTYRATE) (1-AMINO-PROPAN-2-ONE-3-PHOSPHATE))
PRIMARIES - (PNPOXI-RXN (PYRIDOXINE-5P) (PYRIDOXAL_PHOSPHATE))
REACTION-LAYOUT - (RXN-8447 (:LEFT-PRIMARIES 2-AMINO-3-OXO-4-PHOSPHONOOXYBUTYRATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 1-AMINO-PROPAN-2-ONE-3-PHOSPHATE))
REACTION-LAYOUT - (1.1.1.262-RXN (:LEFT-PRIMARIES 4-PHOSPHONOOXY-THREONINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-AMINO-3-OXO-4-PHOSPHONOOXYBUTYRATE))
REACTION-LAYOUT - (PSERTRANSAMPYR-RXN (:LEFT-PRIMARIES 3OH-4P-OH-ALPHA-KETOBUTYRATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 4-PHOSPHONOOXY-THREONINE))
REACTION-LAYOUT - (ERYTHRON4PDEHYDROG-RXN (:LEFT-PRIMARIES ERYTHRONATE-4P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3OH-4P-OH-ALPHA-KETOBUTYRATE))
REACTION-LAYOUT - (PDXJ-RXN (:LEFT-PRIMARIES 1-AMINO-PROPAN-2-ONE-3-PHOSPHATE DEOXYXYLULOSE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PYRIDOXINE-5P))
REACTION-LAYOUT - (DXS-RXN (:LEFT-PRIMARIES GAP PYRUVATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DEOXYXYLULOSE-5P))
REACTION-LAYOUT - (ERYTH4PDEHYDROG-RXN (:LEFT-PRIMARIES ERYTHROSE-4P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ERYTHRONATE-4P))
REACTION-LAYOUT - (PNPOXI-RXN (:LEFT-PRIMARIES PYRIDOXINE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PYRIDOXAL_PHOSPHATE))
REACTION-LIST - RXN-8447
REACTION-LIST - 1.1.1.262-RXN
REACTION-LIST - PSERTRANSAMPYR-RXN
REACTION-LIST - ERYTHRON4PDEHYDROG-RXN
REACTION-LIST - PDXJ-RXN
REACTION-LIST - DXS-RXN
REACTION-LIST - ERYTH4PDEHYDROG-RXN
REACTION-LIST - PNPOXI-RXN
SUPER-PATHWAYS - PWY0-845
SYNONYMS - vitamin B6 biosynthesis
//
UNIQUE-ID - PLPSAL-PWY
TYPES - Vitamin-B6-Biosynthesis
COMMON-NAME - pyridoxal 5'-phosphate salvage pathway
CITATIONS - :EV-COMP-AINF:3497824358:liya
IN-PATHWAY - PWY0-845
PREDECESSORS - (PYRIDOXKIN-RXN)
PREDECESSORS - (PMPOXI-RXN PYRAMKIN-RXN)
PREDECESSORS - (PNPOXI-RXN PNKIN-RXN)
REACTION-LAYOUT - (PYRIDOXKIN-RXN (:LEFT-PRIMARIES PYRIDOXAL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PYRIDOXAL_PHOSPHATE))
REACTION-LAYOUT - (PMPOXI-RXN (:LEFT-PRIMARIES PYRIDOXAMINE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PYRIDOXAL_PHOSPHATE))
REACTION-LAYOUT - (PNPOXI-RXN (:LEFT-PRIMARIES PYRIDOXINE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PYRIDOXAL_PHOSPHATE))
REACTION-LAYOUT - (PYRAMKIN-RXN (:LEFT-PRIMARIES PYRIDOXAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PYRIDOXAMINE-5P))
REACTION-LAYOUT - (PNKIN-RXN (:LEFT-PRIMARIES PYRIDOXINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PYRIDOXINE-5P))
REACTION-LIST - PYRIDOXKIN-RXN
REACTION-LIST - PMPOXI-RXN
REACTION-LIST - PNPOXI-RXN
REACTION-LIST - PYRAMKIN-RXN
REACTION-LIST - PNKIN-RXN
SUPER-PATHWAYS - PWY0-845
SYNONYMS - vitamin B6 salvage
//
UNIQUE-ID - PWY-3961
TYPES - Pantothenate-Biosynthesis
COMMON-NAME - pantothenate biosynthesis II
CITATIONS - :EV-COMP-AINF:3497824358:liya
IN-PATHWAY - PWY-4242
PATHWAY-LINKS - (PANTOTHENATE COA-PWY)
PATHWAY-LINKS - (B-ALANINE PWY-3982 PWY-3981 PWY-3941)
PREDECESSORS - (RXN-6401 1.1.1.168-RXN)
PREDECESSORS - (1.1.1.168-RXN)
PRIMARIES - (RXN-6401 (PANTOYL-LACTONE B-ALANINE) (PANTOTHENATE))
PRIMARIES - (1.1.1.168-RXN (2-DEHYDROPANTOYL-LACTONE) (PANTOYL-LACTONE))
REACTION-LAYOUT - (RXN-6401 (:LEFT-PRIMARIES B-ALANINE PANTOYL-LACTONE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PANTOTHENATE))
REACTION-LAYOUT - (1.1.1.168-RXN (:LEFT-PRIMARIES PANTOYL-LACTONE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 2-DEHYDROPANTOYL-LACTONE))
REACTION-LIST - RXN-6401
REACTION-LIST - 1.1.1.168-RXN
SUPER-PATHWAYS - PWY-4242
SYNONYMS - vitamin B5 biosynthesis
//
UNIQUE-ID - PANTO-PWY
TYPES - Pantothenate-Biosynthesis
COMMON-NAME - pantothenate biosynthesis I
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - |keseler|
CREDITS - SRI
CREDITS - |arnaud|
IN-PATHWAY - PWY-4221
PATHWAY-LINKS - (VAL VALSYN-PWY)
PATHWAY-LINKS - (PANTOTHENATE COA-PWY)
PATHWAY-LINKS - (B-ALANINE (|Beta-Alanine-Biosynthesis| . :INCOMING))
PREDECESSORS - (PANTOATE-BETA-ALANINE-LIG-RXN 2-DEHYDROPANTOATE-REDUCT-RXN)
PREDECESSORS - (2-DEHYDROPANTOATE-REDUCT-RXN 3-CH3-2-OXOBUTANOATE-OH-CH3-XFER-RXN)
PRIMARIES - (PANTOATE-BETA-ALANINE-LIG-RXN (B-ALANINE L-PANTOATE) NIL)
REACTION-LAYOUT - (3-CH3-2-OXOBUTANOATE-OH-CH3-XFER-RXN (:LEFT-PRIMARIES 2-KETO-ISOVALERATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-DEHYDROPANTOATE))
REACTION-LAYOUT - (2-DEHYDROPANTOATE-REDUCT-RXN (:LEFT-PRIMARIES L-PANTOATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 2-DEHYDROPANTOATE))
REACTION-LAYOUT - (PANTOATE-BETA-ALANINE-LIG-RXN (:LEFT-PRIMARIES L-PANTOATE B-ALANINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PANTOTHENATE))
REACTION-LIST - 3-CH3-2-OXOBUTANOATE-OH-CH3-XFER-RXN
REACTION-LIST - 2-DEHYDROPANTOATE-REDUCT-RXN
REACTION-LIST - PANTOATE-BETA-ALANINE-LIG-RXN
SUPER-PATHWAYS - PWY-4221
SYNONYMS - vitamin B5 biosynthesis
//
UNIQUE-ID - PWY-882
TYPES - Ascorbate-Biosynthesis
COMMON-NAME - ascorbate biosynthesis I (L-galactose pathway)
CITATIONS - :EV-COMP-AINF:3497824356:liya
PREDECESSORS - (RXNQT-4141 RXN-1882)
PREDECESSORS - (RXN-1882 2.7.7.13-RXN)
PREDECESSORS - (2.7.7.13-RXN PHOSMANMUT-RXN)
PREDECESSORS - (PHOSMANMUT-RXN MANNPISOM-RXN)
PREDECESSORS - (RXNQT-4142 RXNQT-4141)
PREDECESSORS - (GALACTONOLACTONE-DEHYDROGENASE-RXN RXN-1884)
PREDECESSORS - (RXN-1884 RXNQT-4142)
PRIMARIES - (MANNPISOM-RXN (FRUCTOSE-6P) (MANNOSE-6P))
PRIMARIES - (2.7.7.13-RXN (MANNOSE-1P) (GDP-MANNOSE))
PRIMARIES - (RXNQT-4141 (GDP-L-GALACTOSE) (CPDQT-4))
PRIMARIES - (RXN-7772 (CPD-7078) (GDP-L-GALACTOSE))
PRIMARIES - (RXN-7771 (GDP-MANNOSE) (CPD-7078))
PRIMARIES - (RXN-1884 (L-GALACTOSE) (CPD-330))
PRIMARIES - (RXN-1883 (GDP-L-GALACTOSE) (L-GALACTOSE))
PRIMARIES - (GALACTONOLACTONE-DEHYDROGENASE-RXN (CPD-330) (ASCORBATE))
PRIMARIES - (RXN-1882 (GDP-MANNOSE) (GDP-L-GALACTOSE))
PRIMARIES - (RXN-1881 (MANNOSE-1P) (GDP-MANNOSE))
PRIMARIES - (PHOSMANMUT-RXN (MANNOSE-6P) (MANNOSE-1P))
PRIMARIES - (PGLUCISOM-RXN (GLC-6-P) (FRUCTOSE-6P))
REACTION-LAYOUT - (RXN-1882 (:LEFT-PRIMARIES GDP-MANNOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GDP-L-GALACTOSE))
REACTION-LAYOUT - (2.7.7.13-RXN (:LEFT-PRIMARIES MANNOSE-1P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GDP-MANNOSE))
REACTION-LAYOUT - (PHOSMANMUT-RXN (:LEFT-PRIMARIES MANNOSE-1P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES MANNOSE-6P))
REACTION-LAYOUT - (MANNPISOM-RXN (:LEFT-PRIMARIES MANNOSE-6P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES FRUCTOSE-6P))
REACTION-LAYOUT - (RXNQT-4141 (:LEFT-PRIMARIES GDP-L-GALACTOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPDQT-4))
REACTION-LAYOUT - (RXNQT-4142 (:LEFT-PRIMARIES CPDQT-4) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-GALACTOSE))
REACTION-LAYOUT - (RXN-1884 (:LEFT-PRIMARIES L-GALACTOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-330))
REACTION-LAYOUT - (GALACTONOLACTONE-DEHYDROGENASE-RXN (:LEFT-PRIMARIES CPD-330) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ASCORBATE))
REACTION-LIST - RXN-1882
REACTION-LIST - 2.7.7.13-RXN
REACTION-LIST - PHOSMANMUT-RXN
REACTION-LIST - MANNPISOM-RXN
REACTION-LIST - RXNQT-4141
REACTION-LIST - RXNQT-4142
REACTION-LIST - RXN-1884
REACTION-LIST - GALACTONOLACTONE-DEHYDROGENASE-RXN
SYNONYMS - vitamin C biosynthesis
SYNONYMS - ascorbic acid biosynthesis
SYNONYMS - L-ascorbate biosynthesis
//
UNIQUE-ID - PWY-6168
TYPES - Flavin-Biosynthesis
COMMON-NAME - flavin biosynthesis III (eukaryotes)
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - SRI
CREDITS - |caspi|
PREDECESSORS - (LUMAZINESYN-RXN DIOHBUTANONEPSYN-RXN)
PREDECESSORS - (FADSYN-RXN RIBOFLAVINKIN-RXN)
PREDECESSORS - (RIBOFLAVINKIN-RXN RIBOFLAVIN-SYN-RXN)
PREDECESSORS - (RIBOFLAVIN-SYN-RXN LUMAZINESYN-RXN)
PREDECESSORS - (LUMAZINESYN-RXN RIBOPHOSPHAT-RXN)
PREDECESSORS - (RXN-10057 GTP-CYCLOHYDRO-II-RXN)
PREDECESSORS - (RIBOPHOSPHAT-RXN RXN-10058)
PREDECESSORS - (RXN-10058 RXN-10057)
REACTION-LAYOUT - (DIOHBUTANONEPSYN-RXN (:LEFT-PRIMARIES RIBULOSE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROXY-BUTANONE-P))
REACTION-LAYOUT - (FADSYN-RXN (:LEFT-PRIMARIES FMN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FAD))
REACTION-LAYOUT - (RIBOFLAVINKIN-RXN (:LEFT-PRIMARIES RIBOFLAVIN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FMN))
REACTION-LAYOUT - (RIBOFLAVIN-SYN-RXN (:LEFT-PRIMARIES DIMETHYL-D-RIBITYL-LUMAZINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES RIBOFLAVIN AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE))
REACTION-LAYOUT - (LUMAZINESYN-RXN (:LEFT-PRIMARIES DIHYDROXY-BUTANONE-P AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIMETHYL-D-RIBITYL-LUMAZINE))
REACTION-LAYOUT - (GTP-CYCLOHYDRO-II-RXN (:LEFT-PRIMARIES GTP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR))
REACTION-LAYOUT - (RXN-10057 (:LEFT-PRIMARIES DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-10809))
REACTION-LAYOUT - (RXN-10058 (:LEFT-PRIMARIES CPD-10809) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-1086))
REACTION-LAYOUT - (RIBOPHOSPHAT-RXN (:LEFT-PRIMARIES CPD-1086) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE))
REACTION-LIST - DIOHBUTANONEPSYN-RXN
REACTION-LIST - FADSYN-RXN
REACTION-LIST - RIBOFLAVINKIN-RXN
REACTION-LIST - RIBOFLAVIN-SYN-RXN
REACTION-LIST - LUMAZINESYN-RXN
REACTION-LIST - GTP-CYCLOHYDRO-II-RXN
REACTION-LIST - RXN-10057
REACTION-LIST - RXN-10058
REACTION-LIST - RIBOPHOSPHAT-RXN
//
UNIQUE-ID - PWY-2161B
TYPES - Folate-Biosynthesis
COMMON-NAME - folate polyglutamylation II
CITATIONS - :EV-COMP-AINF:3497824359:liya
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (10-FORMYL-THF PWY-2201)
PATHWAY-LINKS - (THF FOLSYN-PWY)
PREDECESSORS - (RXN-3742 RXN-3741)
PREDECESSORS - (RXN-3741 RXN-3742)
PRIMARIES - (RXN-3741 (|Folatepolyglutamate-n| |Folatepolyglutamate-n|) (|Folatepolyglutamate-n|))
PRIMARIES - (RXN-3742 (|Folatepolyglutamate-n|) (|Folatepolyglutamate-n| |Folatepolyglutamate-n|))
REACTION-LAYOUT - (RXN-3742 (:LEFT-PRIMARIES |Folatepolyglutamate-n|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Folatepolyglutamate-n|))
REACTION-LAYOUT - (RXN-3741 (:LEFT-PRIMARIES |Folatepolyglutamate-n|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Folatepolyglutamate-n|))
REACTION-LIST - RXN-3742
REACTION-LIST - RXN-3741
//
UNIQUE-ID - PWY-2201
TYPES - Folate-Biosynthesis
COMMON-NAME - folate transformations
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (THF FOLSYN-PWY)
PREDECESSORS - (HOMOCYSMETB12-RXN RXN-5061)
PREDECESSORS - (2.1.1.19-RXN RXN-5061)
PREDECESSORS - (RXN-5061 GLYOHMETRANS-RXN)
PREDECESSORS - (HOMOCYSMETB12-RXN 1.5.1.20-RXN)
PREDECESSORS - (1.5.1.20-RXN GCVMULTI-RXN)
PREDECESSORS - (GCVMULTI-RXN 2.1.1.19-RXN)
PREDECESSORS - (2.1.1.19-RXN 1.5.1.20-RXN)
PREDECESSORS - (1.5.1.20-RXN GLYOHMETRANS-RXN)
PREDECESSORS - (5-FORMYL-THF-CYCLO-LIGASE-RXN 1.5.1.15-RXN)
PREDECESSORS - (1.5.1.15-RXN GLYOHMETRANS-RXN)
PREDECESSORS - (5-FORMYL-THF-CYCLO-LIGASE-RXN METHYLENETHFDEHYDROG-NADP-RXN)
PREDECESSORS - (METHYLENETHFDEHYDROG-NADP-RXN GLYOHMETRANS-RXN)
PREDECESSORS - (GLYOHMETRANS-RXN 2.1.1.19-RXN)
PREDECESSORS - (5-FORMYL-THF-CYCLO-LIGASE-RXN METHENYLTHFCYCLOHYDRO-RXN)
PREDECESSORS - (METHENYLTHFCYCLOHYDRO-RXN FORMATETHFLIG-RXN)
PREDECESSORS - (FORMATETHFLIG-RXN 2.1.1.19-RXN)
PREDECESSORS - (FORMYLTHFDEFORMYL-RXN FORMATETHFLIG-RXN)
PREDECESSORS - (GLYOHMETRANS-RXN FORMYLTHFDEFORMYL-RXN)
PREDECESSORS - (FORMATETHFLIG-RXN HOMOCYSMETB12-RXN)
PRIMARIES - (RXN-5061 (METHYLENE-THF) (5-METHYL-THF))
PRIMARIES - (METHYLENETHFDEHYDROG-NADP-RXN (METHYLENE-THF) (5-10-METHENYL-THF))
PRIMARIES - (METHENYLTHFCYCLOHYDRO-RXN (10-FORMYL-THF) (5-10-METHENYL-THF))
PRIMARIES - (HOMOCYSMETB12-RXN (5-METHYL-THF) (THF))
PRIMARIES - (GLYOHMETRANS-RXN (THF) (METHYLENE-THF))
PRIMARIES - (FORMYLTHFDEFORMYL-RXN (10-FORMYL-THF) (THF))
PRIMARIES - (FORMATETHFLIG-RXN (THF) (10-FORMYL-THF))
PRIMARIES - (5-FORMYL-THF-CYCLO-LIGASE-RXN (5-10-METHENYL-THF) (5-FORMYL-THF))
PRIMARIES - (2.1.1.19-RXN (5-METHYL-THF) (THF))
PRIMARIES - (1.5.1.20-RXN (METHYLENE-THF) (5-METHYL-THF))
PRIMARIES - (1.5.1.15-RXN (METHYLENE-THF) (5-10-METHENYL-THF))
REACTION-LAYOUT - (RXN-5061 (:LEFT-PRIMARIES 5-METHYL-THF) (:DIRECTION :R2L) (:RIGHT-PRIMARIES METHYLENE-THF))
REACTION-LAYOUT - (5-FORMYL-THF-CYCLO-LIGASE-RXN (:LEFT-PRIMARIES 5-FORMYL-THF) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 5-10-METHENYL-THF))
REACTION-LAYOUT - (1.5.1.15-RXN (:LEFT-PRIMARIES METHYLENE-THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-10-METHENYL-THF))
REACTION-LAYOUT - (1.5.1.20-RXN (:LEFT-PRIMARIES 5-METHYL-THF) (:DIRECTION :R2L) (:RIGHT-PRIMARIES METHYLENE-THF))
REACTION-LAYOUT - (2.1.1.19-RXN (:LEFT-PRIMARIES THF) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 5-METHYL-THF))
REACTION-LAYOUT - (HOMOCYSMETB12-RXN (:LEFT-PRIMARIES 5-METHYL-THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES THF))
REACTION-LAYOUT - (GCVMULTI-RXN (:LEFT-PRIMARIES THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES METHYLENE-THF))
REACTION-LAYOUT - (METHYLENETHFDEHYDROG-NADP-RXN (:LEFT-PRIMARIES METHYLENE-THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-10-METHENYL-THF))
REACTION-LAYOUT - (GLYOHMETRANS-RXN (:LEFT-PRIMARIES THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES METHYLENE-THF))
REACTION-LAYOUT - (FORMYLTHFDEFORMYL-RXN (:LEFT-PRIMARIES 10-FORMYL-THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES THF))
REACTION-LAYOUT - (METHENYLTHFCYCLOHYDRO-RXN (:LEFT-PRIMARIES 5-10-METHENYL-THF) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 10-FORMYL-THF))
REACTION-LAYOUT - (FORMATETHFLIG-RXN (:LEFT-PRIMARIES THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 10-FORMYL-THF))
REACTION-LIST - RXN-5061
REACTION-LIST - 5-FORMYL-THF-CYCLO-LIGASE-RXN
REACTION-LIST - 1.5.1.15-RXN
REACTION-LIST - 1.5.1.20-RXN
REACTION-LIST - 2.1.1.19-RXN
REACTION-LIST - HOMOCYSMETB12-RXN
REACTION-LIST - GCVMULTI-RXN
REACTION-LIST - METHYLENETHFDEHYDROG-NADP-RXN
REACTION-LIST - GLYOHMETRANS-RXN
REACTION-LIST - FORMYLTHFDEFORMYL-RXN
REACTION-LIST - METHENYLTHFCYCLOHYDRO-RXN
REACTION-LIST - FORMATETHFLIG-RXN
//
UNIQUE-ID - PWY-3841
TYPES - Folate-Biosynthesis
COMMON-NAME - formylTHF biosynthesis II
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |hartmut|
POLYMERIZATION-LINKS - (FORMYL-THF-GLU-N FORMYLTHFGLUSYNTH-RXN FORMYLTHFGLUSYNTH-RXN)
POLYMERIZATION-LINKS - (THF-GLU-N FOLYLPOLYGLUTAMATESYNTH-RXN FOLYLPOLYGLUTAMATESYNTH-RXN)
PREDECESSORS - (5-FORMYL-THF-CYCLO-LIGASE-RXN RXN-6321)
PREDECESSORS - (METHENYLTHFCYCLOHYDRO-RXN 5-FORMYL-THF-CYCLO-LIGASE-RXN)
PREDECESSORS - (METHENYLTHFCYCLOHYDRO-RXN METHYLENETHFDEHYDROG-NADP-RXN)
PREDECESSORS - (METHYLENETHFDEHYDROG-NADP-RXN GLYOHMETRANS-RXN)
PREDECESSORS - (METHYLENETHFDEHYDROG-NADP-RXN GCVMULTI-RXN)
PREDECESSORS - (GLYOHMETRANS-RXN DIHYDROFOLATEREDUCT-RXN)
PREDECESSORS - (GCVMULTI-RXN DIHYDROFOLATEREDUCT-RXN)
PREDECESSORS - (DIHYDROFOLATEREDUCT-RXN DIHYDROFOLATESYNTH-RXN)
PREDECESSORS - (1.5.1.20-RXN GCVMULTI-RXN)
PREDECESSORS - (1.5.1.20-RXN GLYOHMETRANS-RXN)
PREDECESSORS - (THYMIDYLATESYN-RXN GCVMULTI-RXN)
PREDECESSORS - (THYMIDYLATESYN-RXN GLYOHMETRANS-RXN)
PREDECESSORS - (DIHYDROFOLATEREDUCT-RXN THYMIDYLATESYN-RXN)
PREDECESSORS - (RXN-6321 METHYLENETHFDEHYDROG-NADP-RXN)
PREDECESSORS - (RXN-6321 5-FORMYL-THF-CYCLO-LIGASE-RXN)
PREDECESSORS - (HOMOCYSMETB12-RXN 1.5.1.20-RXN)
PREDECESSORS - (FORMATETHFLIG-RXN HOMOCYSMETB12-RXN)
PREDECESSORS - (GCVMULTI-RXN HOMOCYSMETB12-RXN)
PREDECESSORS - (GLYOHMETRANS-RXN HOMOCYSMETB12-RXN)
PRIMARIES - (HOMOCYSMETB12-RXN (5-METHYL-THF) (THF))
PRIMARIES - (HOMOCYSMET-RXN (CPD-1302) (CPD-1301))
PRIMARIES - (RXN-6321 (5-10-METHENYL-THF) (5-FORMYL-THF))
PRIMARIES - (5-FORMYL-THF-CYCLO-LIGASE-RXN (5-FORMYL-THF) (5-10-METHENYL-THF))
PRIMARIES - (FORMATETHFLIG-RXN (THF) (THF))
PRIMARIES - (RXN-6301 (5-METHYL-THF) (THF))
PRIMARIES - (FORMYLTHFGLUSYNTH-RXN (FORMYL-THF-GLU-N) (FORMYL-THF-GLU-N))
PRIMARIES - (THYMIDYLATESYN-RXN (METHYLENE-THF) (DIHYDROFOLATE))
PRIMARIES - (1.5.1.20-RXN (METHYLENE-THF) (5-METHYL-THF))
PRIMARIES - (METHENYLTHFCYCLOHYDRO-RXN (5-10-METHENYL-THF) (10-FORMYL-THF))
PRIMARIES - (METHYLENETHFDEHYDROG-NADP-RXN (METHYLENE-THF) (5-10-METHENYL-THF))
PRIMARIES - (GLYOHMETRANS-RXN (THF) (METHYLENE-THF))
PRIMARIES - (GCVMULTI-RXN (THF) (METHYLENE-THF))
PRIMARIES - (DIHYDROFOLATESYNTH-RXN (7-8-DIHYDROPTEROATE) (DIHYDROFOLATE))
PRIMARIES - (DIHYDROFOLATEREDUCT-RXN (DIHYDROFOLATE) (THF))
REACTION-LAYOUT - (HOMOCYSMETB12-RXN (:LEFT-PRIMARIES 5-METHYL-THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES THF))
REACTION-LAYOUT - (RXN-6321 (:LEFT-PRIMARIES 5-10-METHENYL-THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-FORMYL-THF))
REACTION-LAYOUT - (5-FORMYL-THF-CYCLO-LIGASE-RXN (:LEFT-PRIMARIES 5-FORMYL-THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-10-METHENYL-THF))
REACTION-LAYOUT - (THYMIDYLATESYN-RXN (:LEFT-PRIMARIES METHYLENE-THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROFOLATE))
REACTION-LAYOUT - (1.5.1.20-RXN (:LEFT-PRIMARIES 5-METHYL-THF) (:DIRECTION :R2L) (:RIGHT-PRIMARIES METHYLENE-THF))
REACTION-LAYOUT - (FORMATETHFLIG-RXN (:LEFT-PRIMARIES THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 10-FORMYL-THF))
REACTION-LAYOUT - (METHENYLTHFCYCLOHYDRO-RXN (:LEFT-PRIMARIES 5-10-METHENYL-THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 10-FORMYL-THF))
REACTION-LAYOUT - (METHYLENETHFDEHYDROG-NADP-RXN (:LEFT-PRIMARIES METHYLENE-THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-10-METHENYL-THF))
REACTION-LAYOUT - (GCVMULTI-RXN (:LEFT-PRIMARIES THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES METHYLENE-THF))
REACTION-LAYOUT - (GLYOHMETRANS-RXN (:LEFT-PRIMARIES THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES METHYLENE-THF))
REACTION-LAYOUT - (DIHYDROFOLATEREDUCT-RXN (:LEFT-PRIMARIES THF) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DIHYDROFOLATE))
REACTION-LAYOUT - (DIHYDROFOLATESYNTH-RXN (:LEFT-PRIMARIES 7-8-DIHYDROPTEROATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROFOLATE))
REACTION-LIST - HOMOCYSMETB12-RXN
REACTION-LIST - RXN-6321
REACTION-LIST - 5-FORMYL-THF-CYCLO-LIGASE-RXN
REACTION-LIST - THYMIDYLATESYN-RXN
REACTION-LIST - 1.5.1.20-RXN
REACTION-LIST - FORMATETHFLIG-RXN
REACTION-LIST - METHENYLTHFCYCLOHYDRO-RXN
REACTION-LIST - METHYLENETHFDEHYDROG-NADP-RXN
REACTION-LIST - GCVMULTI-RXN
REACTION-LIST - GLYOHMETRANS-RXN
REACTION-LIST - DIHYDROFOLATEREDUCT-RXN
REACTION-LIST - DIHYDROFOLATESYNTH-RXN
//
UNIQUE-ID - PWY-2161
TYPES - Folate-Biosynthesis
COMMON-NAME - folate polyglutamylation I
CITATIONS - :EV-COMP-AINF:3497824358:liya
CLASS-INSTANCE-LINKS - RXN0-2921
CLASS-INSTANCE-LINKS - FOLYLPOLYGLUTAMATESYNTH-RXN
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (THF FOLSYN-PWY)
POLYMERIZATION-LINKS - (FORMYL-THF-GLU-N FORMYLTHFGLUSYNTH-RXN FORMYLTHFGLUSYNTH-RXN)
POLYMERIZATION-LINKS - (METHYLENE-THF-GLU-N RXN0-2921 RXN0-2921)
POLYMERIZATION-LINKS - (THF-GLU-N FOLYLPOLYGLUTAMATESYNTH-RXN FOLYLPOLYGLUTAMATESYNTH-RXN)
PREDECESSORS - (FOLYLPOLYGLUTAMATESYNTH-RXN)
PREDECESSORS - (RXN0-2921 GLYOHMETRANS-RXN)
PREDECESSORS - (FORMYLTHFGLUSYNTH-RXN FORMATETHFLIG-RXN)
PREDECESSORS - (FORMATETHFLIG-RXN GLYOHMETRANS-RXN)
PREDECESSORS - (GLYOHMETRANS-RXN)
PRIMARIES - (FORMATETHFLIG-RXN (THF) (10-FORMYL-THF))
PRIMARIES - (GLYOHMETRANS-RXN (THF) (METHYLENE-THF))
REACTION-LAYOUT - (FORMYLTHFGLUSYNTH-RXN (:LEFT-PRIMARIES FORMYL-THF-GLU-N) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FORMYL-THF-GLU-N))
REACTION-LAYOUT - (RXN0-2921 (:LEFT-PRIMARIES METHYLENE-THF-GLU-N) (:DIRECTION :L2R) (:RIGHT-PRIMARIES METHYLENE-THF-GLU-N))
REACTION-LAYOUT - (FOLYLPOLYGLUTAMATESYNTH-RXN (:LEFT-PRIMARIES THF-GLU-N) (:DIRECTION :L2R) (:RIGHT-PRIMARIES THF-GLU-N))
REACTION-LAYOUT - (GLYOHMETRANS-RXN (:LEFT-PRIMARIES THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES METHYLENE-THF))
REACTION-LAYOUT - (FORMATETHFLIG-RXN (:LEFT-PRIMARIES THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 10-FORMYL-THF))
REACTION-LIST - FORMYLTHFGLUSYNTH-RXN
REACTION-LIST - RXN0-2921
REACTION-LIST - FOLYLPOLYGLUTAMATESYNTH-RXN
REACTION-LIST - GLYOHMETRANS-RXN
REACTION-LIST - FORMATETHFLIG-RXN
//
UNIQUE-ID - PWY-6147
TYPES - 6-HM-Dihydropterin-PP-Biosynthesis
COMMON-NAME - 6-hydroxymethyl-dihydropterin diphosphate biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (DIHYDROPTERIN-CH2OH-PP FOLSYN-PWY)
PREDECESSORS - (H2PTERIDINEPYROPHOSPHOKIN-RXN H2NEOPTERINALDOL-RXN)
PREDECESSORS - (H2NEOPTERINALDOL-RXN DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN)
PREDECESSORS - (DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN)
PREDECESSORS - (H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN GTP-CYCLOHYDRO-I-RXN)
PREDECESSORS - (GTP-CYCLOHYDRO-I-RXN)
PRIMARIES - (DIHYDROFOLATEREDUCT-RXN (DIHYDROFOLATE) (THF))
PRIMARIES - (GART-RXN (10-FORMYL-THF) (THF))
REACTION-LAYOUT - (GTP-CYCLOHYDRO-I-RXN (:LEFT-PRIMARIES GTP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDRONEOPTERIN-P3))
REACTION-LAYOUT - (H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN (:LEFT-PRIMARIES DIHYDRONEOPTERIN-P3) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDRONEOPTERIN-P))
REACTION-LAYOUT - (DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN (:LEFT-PRIMARIES DIHYDRONEOPTERIN-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDRO-NEO-PTERIN))
REACTION-LAYOUT - (H2NEOPTERINALDOL-RXN (:LEFT-PRIMARIES DIHYDRO-NEO-PTERIN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AMINO-OH-HYDROXYMETHYL-DIHYDROPTERIDINE))
REACTION-LAYOUT - (H2PTERIDINEPYROPHOSPHOKIN-RXN (:LEFT-PRIMARIES AMINO-OH-HYDROXYMETHYL-DIHYDROPTERIDINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROPTERIN-CH2OH-PP))
REACTION-LIST - GTP-CYCLOHYDRO-I-RXN
REACTION-LIST - H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN
REACTION-LIST - DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN
REACTION-LIST - H2NEOPTERINALDOL-RXN
REACTION-LIST - H2PTERIDINEPYROPHOSPHOKIN-RXN
//
UNIQUE-ID - PWY-5905
TYPES - Amino-Acid-Biosynthesis
COMMON-NAME - hypusine biosynthesis
CITATIONS - :EV-COMP-AINF:3497824359:liya
CREDITS - O-27
CREDITS - |pujar|
PREDECESSORS - (DEOXYHYPUSINE-MONOOXYGENASE-RXN 2.5.1.46-RXN)
PRIMARIES - (DEOXYHYPUSINE-MONOOXYGENASE-RXN (CPD-9973) (CPD-9974))
PRIMARIES - (2.5.1.46-RXN (EIF5A-LYSINE) (EIF5A-HYPUSINE))
REACTION-LAYOUT - (DEOXYHYPUSINE-MONOOXYGENASE-RXN (:LEFT-PRIMARIES CPD-9973) (:DIRECTION :L2R) (:RIGHT-PRIMARIES EIF5A-HYPUSINE))
REACTION-LAYOUT - (2.5.1.46-RXN (:LEFT-PRIMARIES EIF5A-LYSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9973))
REACTION-LIST - DEOXYHYPUSINE-MONOOXYGENASE-RXN
REACTION-LIST - 2.5.1.46-RXN
//
UNIQUE-ID - PROSYN-PWY
TYPES - PROLINE-SYN
COMMON-NAME - proline biosynthesis I
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - O-18
CREDITS - |riley|
PATHWAY-LINKS - (GLT (GLUTAMATE-SYN . :INCOMING))
PREDECESSORS - (PYRROLINECARBREDUCT-RXN SPONTPRO-RXN)
PREDECESSORS - (SPONTPRO-RXN GLUTSEMIALDEHYDROG-RXN)
PREDECESSORS - (GLUTSEMIALDEHYDROG-RXN GLUTKIN-RXN)
REACTION-LAYOUT - (GLUTKIN-RXN (:LEFT-PRIMARIES GLT) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-GLUTAMATE-5-P))
REACTION-LAYOUT - (GLUTSEMIALDEHYDROG-RXN (:LEFT-PRIMARIES L-GLUTAMATE_GAMMA-SEMIALDEHYDE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES L-GLUTAMATE-5-P))
REACTION-LAYOUT - (PYRROLINECARBREDUCT-RXN (:LEFT-PRIMARIES PRO) (:DIRECTION :R2L) (:RIGHT-PRIMARIES L-DELTA1-PYRROLINE_5-CARBOXYLATE))
REACTION-LAYOUT - (SPONTPRO-RXN (:LEFT-PRIMARIES L-GLUTAMATE_GAMMA-SEMIALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-DELTA1-PYRROLINE_5-CARBOXYLATE))
REACTION-LIST - GLUTKIN-RXN
REACTION-LIST - GLUTSEMIALDEHYDROG-RXN
REACTION-LIST - PYRROLINECARBREDUCT-RXN
REACTION-LIST - SPONTPRO-RXN
//
UNIQUE-ID - PWY-4981
TYPES - PROLINE-SYN
COMMON-NAME - proline biosynthesis II (from arginine)
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - SRI
CREDITS - |caspi|
PREDECESSORS - (ORNITHINE-GLU-AMINOTRANSFORASE-RXN CITRULLINASE-RXN)
PREDECESSORS - (CITRULLINASE-RXN ARGININE-DEIMINASE-RXN)
PREDECESSORS - (ORNCARBAMTRANSFER-RXN ARGININE-DEIMINASE-RXN)
PREDECESSORS - (ORNITHINE-GLU-AMINOTRANSFORASE-RXN ORNCARBAMTRANSFER-RXN)
PREDECESSORS - (SPONTPRO-RXN ORNITHINE-GLU-AMINOTRANSFORASE-RXN)
PREDECESSORS - (PYRROLINECARBREDUCT-RXN SPONTPRO-RXN)
REACTION-LAYOUT - (CITRULLINASE-RXN (:LEFT-PRIMARIES L-CITRULLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-ORNITHINE))
REACTION-LAYOUT - (PYRROLINECARBREDUCT-RXN (:LEFT-PRIMARIES PRO) (:DIRECTION :R2L) (:RIGHT-PRIMARIES L-DELTA1-PYRROLINE_5-CARBOXYLATE))
REACTION-LAYOUT - (SPONTPRO-RXN (:LEFT-PRIMARIES L-GLUTAMATE_GAMMA-SEMIALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-DELTA1-PYRROLINE_5-CARBOXYLATE))
REACTION-LAYOUT - (ORNITHINE-GLU-AMINOTRANSFORASE-RXN (:LEFT-PRIMARIES L-ORNITHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-GLUTAMATE_GAMMA-SEMIALDEHYDE))
REACTION-LAYOUT - (ORNCARBAMTRANSFER-RXN (:LEFT-PRIMARIES L-ORNITHINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES L-CITRULLINE))
REACTION-LAYOUT - (ARGININE-DEIMINASE-RXN (:LEFT-PRIMARIES ARG) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-CITRULLINE))
REACTION-LIST - CITRULLINASE-RXN
REACTION-LIST - PYRROLINECARBREDUCT-RXN
REACTION-LIST - SPONTPRO-RXN
REACTION-LIST - ORNITHINE-GLU-AMINOTRANSFORASE-RXN
REACTION-LIST - ORNCARBAMTRANSFER-RXN
REACTION-LIST - ARGININE-DEIMINASE-RXN
//
UNIQUE-ID - HISTSYN-PWY
TYPES - HISTIDINE-SYN
COMMON-NAME - histidine biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - |caspi|
CREDITS - SRI
CREDITS - |shearer|
PATHWAY-LINKS - (PRPP (|FRPP-Biosynthesis| . :INCOMING))
PREDECESSORS - (ATPPHOSPHORIBOSYLTRANS-RXN)
PREDECESSORS - (HISTPRATPHYD-RXN ATPPHOSPHORIBOSYLTRANS-RXN)
PREDECESSORS - (HISTCYCLOHYD-RXN HISTPRATPHYD-RXN)
PREDECESSORS - (PRIBFAICARPISOM-RXN HISTCYCLOHYD-RXN)
PREDECESSORS - (GLUTAMIDOTRANS-RXN PRIBFAICARPISOM-RXN)
PREDECESSORS - (IMIDPHOSDEHYD-RXN GLUTAMIDOTRANS-RXN)
PREDECESSORS - (HISTAMINOTRANS-RXN IMIDPHOSDEHYD-RXN)
PREDECESSORS - (HISTIDPHOS-RXN HISTAMINOTRANS-RXN)
PREDECESSORS - (HISTOLDEHYD-RXN HISTIDPHOS-RXN)
PREDECESSORS - (HISTALDEHYD-RXN HISTOLDEHYD-RXN)
PRIMARIES - (GLUTAMIDOTRANS-RXN NIL (AICAR))
REACTION-LAYOUT - (ATPPHOSPHORIBOSYLTRANS-RXN (:LEFT-PRIMARIES PHOSPHORIBOSYL-ATP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PRPP))
REACTION-LAYOUT - (HISTCYCLOHYD-RXN (:LEFT-PRIMARIES PHOSPHORIBOSYL-AMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHORIBOSYL-FORMIMINO-AICAR-P))
REACTION-LAYOUT - (HISTPRATPHYD-RXN (:LEFT-PRIMARIES PHOSPHORIBOSYL-ATP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHORIBOSYL-AMP))
REACTION-LAYOUT - (PRIBFAICARPISOM-RXN (:LEFT-PRIMARIES PHOSPHORIBOSYL-FORMIMINO-AICAR-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHORIBULOSYL-FORMIMINO-AICAR-P))
REACTION-LAYOUT - (GLUTAMIDOTRANS-RXN (:LEFT-PRIMARIES PHOSPHORIBULOSYL-FORMIMINO-AICAR-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AICAR D-ERYTHRO-IMIDAZOLE-GLYCEROL-P))
REACTION-LAYOUT - (IMIDPHOSDEHYD-RXN (:LEFT-PRIMARIES D-ERYTHRO-IMIDAZOLE-GLYCEROL-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES IMIDAZOLE-ACETOL-P))
REACTION-LAYOUT - (HISTAMINOTRANS-RXN (:LEFT-PRIMARIES IMIDAZOLE-ACETOL-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-HISTIDINOL-P))
REACTION-LAYOUT - (HISTIDPHOS-RXN (:LEFT-PRIMARIES L-HISTIDINOL-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HISTIDINOL))
REACTION-LAYOUT - (HISTOLDEHYD-RXN (:LEFT-PRIMARIES HISTIDINOL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HISTIDINAL))
REACTION-LAYOUT - (HISTALDEHYD-RXN (:LEFT-PRIMARIES HISTIDINAL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HIS))
REACTION-LIST - ATPPHOSPHORIBOSYLTRANS-RXN
REACTION-LIST - HISTCYCLOHYD-RXN
REACTION-LIST - HISTPRATPHYD-RXN
REACTION-LIST - PRIBFAICARPISOM-RXN
REACTION-LIST - GLUTAMIDOTRANS-RXN
REACTION-LIST - IMIDPHOSDEHYD-RXN
REACTION-LIST - HISTAMINOTRANS-RXN
REACTION-LIST - HISTIDPHOS-RXN
REACTION-LIST - HISTOLDEHYD-RXN
REACTION-LIST - HISTALDEHYD-RXN
//
UNIQUE-ID - PWY-6281
TYPES - Selenocysteine-Biosynthesis
COMMON-NAME - selenocysteine biosynthesis II (archaea and eukaryotes)
CITATIONS - :EV-COMP-AINF:3497824359:liya
CREDITS - SRI
CREDITS - |fulcher|
PATHWAY-LINKS - (SER SERSYN-PWY)
PREDECESSORS - (RXN-10039 2.7.9.3-RXN)
PREDECESSORS - (2.7.9.3-RXN)
PREDECESSORS - (RXN-10039 RXN-10038)
PREDECESSORS - (RXN-10038 RXN0-2161)
PREDECESSORS - (RXN0-2161)
PRIMARIES - (RXN0-2161 (SER) NIL)
PRIMARIES - (RXN-10039 (|O-phospho-L-seryl-tRNASecs| SEPO3) (|Charged-SEC-tRNAs|))
REACTION-LAYOUT - (2.7.9.3-RXN (:LEFT-PRIMARIES CPD-678) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SEPO3))
REACTION-LAYOUT - (RXN-10039 (:LEFT-PRIMARIES SEPO3 |O-phospho-L-seryl-tRNASecs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-SEC-tRNAs|))
REACTION-LAYOUT - (RXN-10038 (:LEFT-PRIMARIES |L-seryl-SEC-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |O-phospho-L-seryl-tRNASecs|))
REACTION-LAYOUT - (RXN0-2161 (:LEFT-PRIMARIES SER) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |L-seryl-SEC-tRNAs|))
REACTION-LIST - 2.7.9.3-RXN
REACTION-LIST - RXN-10039
REACTION-LIST - RXN-10038
REACTION-LIST - RXN0-2161
//
UNIQUE-ID - PHESYN
TYPES - PHENYLALANINE-SYN
COMMON-NAME - phenylalanine biosynthesis I
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - |ingraham|
CREDITS - O0-3
CREDITS - SRI
CREDITS - |caspi|
CREDITS - O-18
CREDITS - |riley|
KEY-REACTIONS - PHEAMINOTRANS-RXN
PATHWAY-LINKS - (PHE PWY-5751)
PATHWAY-LINKS - (CHORISMATE ARO-PWY)
PREDECESSORS - (CHORISMATEMUT-RXN)
PREDECESSORS - (PREPHENATEDEHYDRAT-RXN CHORISMATEMUT-RXN)
PREDECESSORS - (PHEAMINOTRANS-RXN PREPHENATEDEHYDRAT-RXN)
PRIMARIES - (PHEAMINOTRANS-RXN NIL (PHE))
REACTION-LAYOUT - (CHORISMATEMUT-RXN (:LEFT-PRIMARIES CHORISMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PREPHENATE))
REACTION-LAYOUT - (PREPHENATEDEHYDRAT-RXN (:LEFT-PRIMARIES PREPHENATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHENYL-PYRUVATE))
REACTION-LAYOUT - (PHEAMINOTRANS-RXN (:LEFT-PRIMARIES PHENYL-PYRUVATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHE))
REACTION-LIST - CHORISMATEMUT-RXN
REACTION-LIST - PREPHENATEDEHYDRAT-RXN
REACTION-LIST - PHEAMINOTRANS-RXN
//
UNIQUE-ID - PWY-3462
TYPES - PHENYLALANINE-SYN
COMMON-NAME - phenylalanine biosynthesis II
CITATIONS - :EV-COMP-AINF:3497824358:liya
KEY-REACTIONS - CARBOXYCYCLOHEXADIENYL-DEHYDRATASE-RXN
PATHWAY-LINKS - (CHORISMATE ARO-PWY)
PATHWAY-LINKS - (PHE PWY1F-467)
PREDECESSORS - (CARBOXYCYCLOHEXADIENYL-DEHYDRATASE-RXN PREPHENATE-TRANSAMINE-RXN)
PREDECESSORS - (PREPHENATE-TRANSAMINE-RXN CHORISMATEMUT-RXN)
PRIMARIES - (CARBOXYCYCLOHEXADIENYL-DEHYDRATASE-RXN (CPD-659) (PHE))
PRIMARIES - (PREPHENATE-TRANSAMINE-RXN (PREPHENATE) (CPD-659))
PRIMARIES - (CHORISMATEMUT-RXN (CHORISMATE) (PREPHENATE))
REACTION-LAYOUT - (CARBOXYCYCLOHEXADIENYL-DEHYDRATASE-RXN (:LEFT-PRIMARIES CPD-659) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHE))
REACTION-LAYOUT - (PREPHENATE-TRANSAMINE-RXN (:LEFT-PRIMARIES PREPHENATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-659))
REACTION-LAYOUT - (CHORISMATEMUT-RXN (:LEFT-PRIMARIES CHORISMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PREPHENATE))
REACTION-LIST - CARBOXYCYCLOHEXADIENYL-DEHYDRATASE-RXN
REACTION-LIST - PREPHENATE-TRANSAMINE-RXN
REACTION-LIST - CHORISMATEMUT-RXN
//
UNIQUE-ID - HOMOSER-THRESYN-PWY
TYPES - THREONINE-BIOSYNTHESIS
COMMON-NAME - threonine biosynthesis from homoserine
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |shearer|
IN-PATHWAY - PWY-724
IN-PATHWAY - THRESYN-PWY
IN-PATHWAY - PWY-3001
PATHWAY-LINKS - (THR ILEUSYN-PWY)
PATHWAY-LINKS - (HOMO-SER HOMOSERSYN-PWY)
PREDECESSORS - (THRESYN-RXN HOMOSERKIN-RXN)
REACTION-LAYOUT - (THRESYN-RXN (:LEFT-PRIMARIES O-PHOSPHO-L-HOMOSERINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES THR))
REACTION-LAYOUT - (HOMOSERKIN-RXN (:LEFT-PRIMARIES HOMO-SER) (:DIRECTION :L2R) (:RIGHT-PRIMARIES O-PHOSPHO-L-HOMOSERINE))
REACTION-LIST - THRESYN-RXN
REACTION-LIST - HOMOSERKIN-RXN
SUPER-PATHWAYS - PWY-724
SUPER-PATHWAYS - THRESYN-PWY
SUPER-PATHWAYS - PWY-3001
//
UNIQUE-ID - GLNSYN-PWY
TYPES - GLUTAMINE-SYN
COMMON-NAME - glutamine biosynthesis I
CITATIONS - :EV-COMP-AINF:3497824359:liya
CREDITS - |shearer|
CREDITS - SRI
CREDITS - |fulcher|
CREDITS - O-18
CREDITS - |riley|
PATHWAY-LINKS - (GLN GLUGLNSYN-PWY)
PREDECESSORS - (GLUTAMINESYN-RXN)
PRIMARIES - (GLUTAMINESYN-RXN (GLT))
REACTION-LAYOUT - (GLUTAMINESYN-RXN (:LEFT-PRIMARIES GLT) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLN))
REACTION-LIST - GLUTAMINESYN-RXN
SYNONYMS - glutamine - glutamate pathway
//
UNIQUE-ID - PWY-5921
TYPES - GLUTAMINE-SYN
TYPES - Aminoacyl-tRNAs-Charging
COMMON-NAME - L-glutamine biosynthesis II (tRNA-dependent)
CITATIONS - :EV-COMP-AINF:3497824359:liya
CREDITS - SRI
CREDITS - |fulcher|
PATHWAY-LINKS - (GLT GLUTAMATE-SYN)
PREDECESSORS - (6.3.5.7-RXN RXN-9386)
PREDECESSORS - (RXN-9386)
PRIMARIES - (RXN-9386 (GLT) (GLUTAMYL-TRNA-GLN))
REACTION-LAYOUT - (6.3.5.7-RXN (:LEFT-PRIMARIES GLUTAMYL-TRNA-GLN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLUTAMINYL-TRNA-GLN GLT))
REACTION-LAYOUT - (RXN-9386 (:LEFT-PRIMARIES GLT) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLUTAMYL-TRNA-GLN))
REACTION-LIST - 6.3.5.7-RXN
REACTION-LIST - RXN-9386
SYNONYMS - glutaminyl-tRNAgln biosynthesis via transamidation
//
UNIQUE-ID - PWY-3941
TYPES - Beta-Alanine-Biosynthesis
COMMON-NAME - β-alanine biosynthesis II
CITATIONS - :EV-COMP-AINF:3497824357:liya
IN-PATHWAY - PWY-4221
PATHWAY-LINKS - (B-ALANINE PWY-3961)
PREDECESSORS - (RXN-6383 PROPCOASYN-RXN)
PREDECESSORS - (3-HYDROXYPROPIONATE-DEHYDROGENASE-RXN RXN-6384)
PREDECESSORS - (RXN-6384 RXN-6383)
PREDECESSORS - (PROPIONATE--COA-LIGASE-RXN)
PREDECESSORS - (PROPCOASYN-RXN PROPIONATE--COA-LIGASE-RXN)
PREDECESSORS - (2.6.1.18-RXN 3-HYDROXYPROPIONATE-DEHYDROGENASE-RXN)
PRIMARIES - (2.6.1.18-RXN (MALONATE-S-ALD) (B-ALANINE))
PRIMARIES - (PROPIONATE--COA-LIGASE-RXN (PROPIONATE) (PROPIONYL-COA))
PRIMARIES - (RXN-6384 (3-HYDROXY-PROPIONYL-COA) (3-HYDROXY-PROPIONATE))
PRIMARIES - (RXN-6383 (ACRYLYL-COA) (3-HYDROXY-PROPIONYL-COA))
PRIMARIES - (PROPCOASYN-RXN (PROPIONYL-COA) (ACRYLYL-COA))
PRIMARIES - (3-HYDROXYPROPIONATE-DEHYDROGENASE-RXN (3-HYDROXY-PROPIONATE) (MALONATE-S-ALD))
PRIMARIES - (SPERMIDINE-DEHYDROGENASE-RXN (SPERMIDINE) (CPD-313))
PRIMARIES - (RXN-6381 (CPD-313) (CPD-6082))
PRIMARIES - (RXN-6382 (CPD-6082) (B-ALANINE))
PRIMARIES - (BETA-UREIDOPROPIONASE-RXN (3-UREIDO-PROPIONATE) (B-ALANINE))
PRIMARIES - (DIHYDROPYRIMIDINASE-RXN (DI-H-URACIL) (3-UREIDO-PROPIONATE))
PRIMARIES - (1.3.1.2-RXN (URACIL) (DI-H-URACIL))
REACTION-LAYOUT - (2.6.1.18-RXN (:LEFT-PRIMARIES MALONATE-S-ALD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES B-ALANINE))
REACTION-LAYOUT - (PROPCOASYN-RXN (:LEFT-PRIMARIES ACRYLYL-COA) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PROPIONYL-COA))
REACTION-LAYOUT - (3-HYDROXYPROPIONATE-DEHYDROGENASE-RXN (:LEFT-PRIMARIES 3-HYDROXY-PROPIONATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MALONATE-S-ALD))
REACTION-LAYOUT - (RXN-6384 (:LEFT-PRIMARIES 3-HYDROXY-PROPIONYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-HYDROXY-PROPIONATE))
REACTION-LAYOUT - (RXN-6383 (:LEFT-PRIMARIES ACRYLYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-HYDROXY-PROPIONYL-COA))
REACTION-LAYOUT - (PROPIONATE--COA-LIGASE-RXN (:LEFT-PRIMARIES PROPIONATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PROPIONYL-COA))
REACTION-LIST - 2.6.1.18-RXN
REACTION-LIST - PROPCOASYN-RXN
REACTION-LIST - 3-HYDROXYPROPIONATE-DEHYDROGENASE-RXN
REACTION-LIST - RXN-6384
REACTION-LIST - RXN-6383
REACTION-LIST - PROPIONATE--COA-LIGASE-RXN
SUPER-PATHWAYS - PWY-4221
SYNONYMS - β-alanine biosynthesis from proprionate
//
UNIQUE-ID - PWY-3981
TYPES - Beta-Alanine-Biosynthesis
COMMON-NAME - β-alanine biosynthesis I
CITATIONS - :EV-COMP-AINF:3497824358:liya
PATHWAY-LINKS - (SPERMINE ARGSPECAT-PWY)
PATHWAY-LINKS - (SPERMIDINE BSUBPOLYAMSYN-PWY)
PATHWAY-LINKS - (B-ALANINE PANTO-PWY PWY-3961)
PREDECESSORS - (RXN-6423 SPERMIDINE-DEHYDROGENASE-RXN)
PREDECESSORS - (RXN-6382 RXN-6381)
PREDECESSORS - (RXN-6381 SPERMIDINE-DEHYDROGENASE-RXN)
PREDECESSORS - (SPERMIDINE-DEHYDROGENASE-RXN)
PREDECESSORS - (RXN-6421)
PREDECESSORS - (RXN-6381 RXN-6421)
PREDECESSORS - (RXN-6425 RXN-6424)
PREDECESSORS - (RXN-6424 RXN-6421)
PRIMARIES - (RXN-6425 (CPD-6123) (CPD-6122))
PRIMARIES - (RXN-6424 (CPD-6121) (CPD-6123))
PRIMARIES - (RXN-6421 (SPERMINE) (CPD-6121 CPD-313))
PRIMARIES - (SPERMIDINE-DEHYDROGENASE-RXN (SPERMIDINE) (4-AMINO-BUTYRALDEHYDE CPD-313))
PRIMARIES - (RXN-6423 (4-AMINO-BUTYRALDEHYDE) (CPD-6124))
PRIMARIES - (RXN-6382 (CPD-6082) (B-ALANINE))
PRIMARIES - (RXN-6381 (CPD-313) (CPD-6082))
REACTION-LAYOUT - (RXN-6424 (:LEFT-PRIMARIES CPD-6121) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6123))
REACTION-LAYOUT - (RXN-6425 (:LEFT-PRIMARIES CPD-6123) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6122))
REACTION-LAYOUT - (RXN-6423 (:LEFT-PRIMARIES 4-AMINO-BUTYRALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6124))
REACTION-LAYOUT - (RXN-6421 (:LEFT-PRIMARIES SPERMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-313 CPD-6121))
REACTION-LAYOUT - (RXN-6382 (:LEFT-PRIMARIES CPD-6082) (:DIRECTION :L2R) (:RIGHT-PRIMARIES B-ALANINE))
REACTION-LAYOUT - (RXN-6381 (:LEFT-PRIMARIES CPD-313) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6082))
REACTION-LAYOUT - (SPERMIDINE-DEHYDROGENASE-RXN (:LEFT-PRIMARIES SPERMIDINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 4-AMINO-BUTYRALDEHYDE CPD-313))
REACTION-LIST - RXN-6424
REACTION-LIST - RXN-6425
REACTION-LIST - RXN-6423
REACTION-LIST - RXN-6421
REACTION-LIST - RXN-6382
REACTION-LIST - RXN-6381
REACTION-LIST - SPERMIDINE-DEHYDROGENASE-RXN
SYNONYMS - β-alanine biosynthesis from polyamines
//
UNIQUE-ID - PWY-4341
TYPES - GLUTAMATE-SYN
COMMON-NAME - glutamate biosynthesis V
CITATIONS - :EV-COMP-AINF:3497824359:liya
CREDITS - SRI
CREDITS - |caspi|
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |zhang|
PRIMARIES - (GLUTAMATE-SYNTHASE-FERREDOXIN-RXN (2-KETOGLUTARATE GLN) (GLT))
REACTION-LAYOUT - (GLUTAMATE-SYNTHASE-FERREDOXIN-RXN (:LEFT-PRIMARIES GLT) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GLN 2-KETOGLUTARATE))
REACTION-LIST - GLUTAMATE-SYNTHASE-FERREDOXIN-RXN
//
UNIQUE-ID - GLUGLNSYN-PWY
TYPES - GLUTAMATE-SYN
COMMON-NAME - glutamate biosynthesis IV
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - |hong|
CREDITS - |balakrishnan|
CREDITS - SRI
CREDITS - |caspi|
CREDITS - O-16
PATHWAY-LINKS - (GLN GLNSYN-PWY)
PREDECESSORS - (GLUTAMATE-SYNTHASE-NADH-RXN)
PRIMARIES - (GLUTAMATE-SYNTHASE-NADH-RXN (GLN) (GLT))
PRIMARIES - (GLUTAMATESYN-RXN (GLN) (GLT))
REACTION-LAYOUT - (GLUTAMATE-SYNTHASE-NADH-RXN (:LEFT-PRIMARIES GLT) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GLN))
REACTION-LIST - GLUTAMATE-SYNTHASE-NADH-RXN
SYNONYMS - glutamate biosynthesis from glutamine
//
UNIQUE-ID - PWY-5097
TYPES - LYSINE-SYN
COMMON-NAME - lysine biosynthesis VI
CITATIONS - :EV-COMP-AINF:3497824358:liya
IN-PATHWAY - PWY-724
KEY-REACTIONS - DIAMINOPIMEPIM-RXN
KEY-REACTIONS - RXN-7737
PREDECESSORS - (DIHYDRODIPICSYN-RXN ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN)
PREDECESSORS - (DIAMINOPIMDECARB-RXN DIAMINOPIMEPIM-RXN)
PREDECESSORS - (DIAMINOPIMEPIM-RXN RXN-7737)
PREDECESSORS - (RXN-7737 DIHYDROPICRED-RXN)
PREDECESSORS - (DIHYDROPICRED-RXN DIHYDRODIPICSYN-RXN)
PREDECESSORS - (ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN ASPARTATEKIN-RXN)
PRIMARIES - (RXN-7737 (DELTA1-PIPERIDEINE-2-6-DICARBOXYLATE) (LL-DIAMINOPIMELATE))
PRIMARIES - (DIAMINOPIMDECARB-RXN (MESO-DIAMINOPIMELATE) (LYS))
PRIMARIES - (DIAMINOPIMEPIM-RXN (LL-DIAMINOPIMELATE) (MESO-DIAMINOPIMELATE))
PRIMARIES - (DIHYDROPICRED-RXN (2-3-DIHYDRODIPICOLINATE) (DELTA1-PIPERIDEINE-2-6-DICARBOXYLATE))
PRIMARIES - (DIHYDRODIPICSYN-RXN (L-ASPARTATE-SEMIALDEHYDE) (2-3-DIHYDRODIPICOLINATE))
PRIMARIES - (ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN (L-BETA-ASPARTYL-P) (L-ASPARTATE-SEMIALDEHYDE))
PRIMARIES - (ASPARTATEKIN-RXN (L-ASPARTATE) (L-BETA-ASPARTYL-P))
REACTION-LAYOUT - (DIAMINOPIMDECARB-RXN (:LEFT-PRIMARIES MESO-DIAMINOPIMELATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES LYS))
REACTION-LAYOUT - (DIAMINOPIMEPIM-RXN (:LEFT-PRIMARIES LL-DIAMINOPIMELATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MESO-DIAMINOPIMELATE))
REACTION-LAYOUT - (RXN-7737 (:LEFT-PRIMARIES DELTA1-PIPERIDEINE-2-6-DICARBOXYLATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES LL-DIAMINOPIMELATE))
REACTION-LAYOUT - (DIHYDROPICRED-RXN (:LEFT-PRIMARIES DELTA1-PIPERIDEINE-2-6-DICARBOXYLATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 2-3-DIHYDRODIPICOLINATE))
REACTION-LAYOUT - (DIHYDRODIPICSYN-RXN (:LEFT-PRIMARIES L-ASPARTATE-SEMIALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-3-DIHYDRODIPICOLINATE))
REACTION-LAYOUT - (ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN (:LEFT-PRIMARIES L-ASPARTATE-SEMIALDEHYDE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES L-BETA-ASPARTYL-P))
REACTION-LAYOUT - (ASPARTATEKIN-RXN (:LEFT-PRIMARIES L-ASPARTATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-BETA-ASPARTYL-P))
REACTION-LIST - DIAMINOPIMDECARB-RXN
REACTION-LIST - DIAMINOPIMEPIM-RXN
REACTION-LIST - RXN-7737
REACTION-LIST - DIHYDROPICRED-RXN
REACTION-LIST - DIHYDRODIPICSYN-RXN
REACTION-LIST - ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN
REACTION-LIST - ASPARTATEKIN-RXN
SUPER-PATHWAYS - PWY-724
//
UNIQUE-ID - ARGSYNBSUB-PWY
TYPES - ARGININE-SYN
COMMON-NAME - arginine biosynthesis II (acetyl cycle)
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - SRI
CREDITS - |caspi|
CREDITS - O-18
CREDITS - |pellegrini-toole|
KEY-REACTIONS - N-ACETYLTRANSFER-RXN
KEY-REACTIONS - GLUTAMATE-N-ACETYLTRANSFERASE-RXN
PATHWAY-LINKS - (GLT PROLINE-SYN)
PATHWAY-LINKS - (CARBAMOYL-P (PWY0-162 . :OUTGOING))
PREDECESSORS - (ACETYLGLUTKIN-RXN GLUTAMATE-N-ACETYLTRANSFERASE-RXN)
PREDECESSORS - (GLUTAMATE-N-ACETYLTRANSFERASE-RXN ACETYLORNTRANSAM-RXN)
PREDECESSORS - (ORNCARBAMTRANSFER-RXN GLUTAMATE-N-ACETYLTRANSFERASE-RXN)
PREDECESSORS - (N-ACETYLTRANSFER-RXN)
PREDECESSORS - (ORNCARBAMTRANSFER-RXN CARBPSYN-RXN)
PREDECESSORS - (ACETYLGLUTKIN-RXN N-ACETYLTRANSFER-RXN)
PREDECESSORS - (N-ACETYLGLUTPREDUCT-RXN ACETYLGLUTKIN-RXN)
PREDECESSORS - (ACETYLORNTRANSAM-RXN N-ACETYLGLUTPREDUCT-RXN)
PREDECESSORS - (ARGSUCCINSYN-RXN ORNCARBAMTRANSFER-RXN)
PREDECESSORS - (ARGSUCCINLYA-RXN ARGSUCCINSYN-RXN)
PRIMARIES - (ARGSUCCINLYA-RXN (L-ARGININO-SUCCINATE) (ARG))
PRIMARIES - (CARBPSYN-RXN (GLN) (CARBAMOYL-P))
REACTION-LAYOUT - (N-ACETYLTRANSFER-RXN (:LEFT-PRIMARIES GLT) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ACETYL-GLU))
REACTION-LAYOUT - (CARBPSYN-RXN (:LEFT-PRIMARIES GLN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CARBAMOYL-P GLT))
REACTION-LAYOUT - (GLUTAMATE-N-ACETYLTRANSFERASE-RXN (:LEFT-PRIMARIES N-ALPHA-ACETYLORNITHINE GLT) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-ORNITHINE ACETYL-GLU))
REACTION-LAYOUT - (ACETYLGLUTKIN-RXN (:LEFT-PRIMARIES ACETYL-GLU) (:DIRECTION :L2R) (:RIGHT-PRIMARIES N-ACETYL-GLUTAMYL-P))
REACTION-LAYOUT - (N-ACETYLGLUTPREDUCT-RXN (:LEFT-PRIMARIES CPD-469) (:DIRECTION :R2L) (:RIGHT-PRIMARIES N-ACETYL-GLUTAMYL-P))
REACTION-LAYOUT - (ACETYLORNTRANSAM-RXN (:LEFT-PRIMARIES N-ALPHA-ACETYLORNITHINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CPD-469 GLT))
REACTION-LAYOUT - (ORNCARBAMTRANSFER-RXN (:LEFT-PRIMARIES CARBAMOYL-P L-ORNITHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-CITRULLINE))
REACTION-LAYOUT - (ARGSUCCINLYA-RXN (:LEFT-PRIMARIES L-ARGININO-SUCCINATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ARG))
REACTION-LAYOUT - (ARGSUCCINSYN-RXN (:LEFT-PRIMARIES L-CITRULLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-ARGININO-SUCCINATE))
REACTION-LIST - N-ACETYLTRANSFER-RXN
REACTION-LIST - CARBPSYN-RXN
REACTION-LIST - GLUTAMATE-N-ACETYLTRANSFERASE-RXN
REACTION-LIST - ACETYLGLUTKIN-RXN
REACTION-LIST - N-ACETYLGLUTPREDUCT-RXN
REACTION-LIST - ACETYLORNTRANSAM-RXN
REACTION-LIST - ORNCARBAMTRANSFER-RXN
REACTION-LIST - ARGSUCCINLYA-RXN
REACTION-LIST - ARGSUCCINSYN-RXN
//
UNIQUE-ID - VALSYN-PWY
TYPES - VALINE-BIOSYNTHESIS
COMMON-NAME - valine biosynthesis
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - O-18
CREDITS - |riley|
CREDITS - SRI
CREDITS - |shearer|
IN-PATHWAY - BRANCHED-CHAIN-AA-SYN-PWY
PATHWAY-LINKS - (2-KETO-ISOVALERATE LEUSYN-PWY)
PREDECESSORS - (BRANCHED-CHAINAMINOTRANSFERVAL-RXN DIHYDROXYISOVALDEHYDRAT-RXN)
PREDECESSORS - (DIHYDROXYISOVALDEHYDRAT-RXN ACETOLACTREDUCTOISOM-RXN)
PREDECESSORS - (ACETOLACTREDUCTOISOM-RXN ACETOLACTSYN-RXN)
PREDECESSORS - (ACETOLACTSYN-RXN)
REACTION-LAYOUT - (ACETOLACTSYN-RXN (:LEFT-PRIMARIES PYRUVATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-ACETO-LACTATE))
REACTION-LAYOUT - (ACETOLACTREDUCTOISOM-RXN (:LEFT-PRIMARIES DIOH-ISOVALERATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 2-ACETO-LACTATE))
REACTION-LAYOUT - (BRANCHED-CHAINAMINOTRANSFERVAL-RXN (:LEFT-PRIMARIES VAL) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 2-KETO-ISOVALERATE))
REACTION-LAYOUT - (DIHYDROXYISOVALDEHYDRAT-RXN (:LEFT-PRIMARIES DIOH-ISOVALERATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-KETO-ISOVALERATE))
REACTION-LIST - ACETOLACTSYN-RXN
REACTION-LIST - ACETOLACTREDUCTOISOM-RXN
REACTION-LIST - BRANCHED-CHAINAMINOTRANSFERVAL-RXN
REACTION-LIST - DIHYDROXYISOVALDEHYDRAT-RXN
SUPER-PATHWAYS - BRANCHED-CHAIN-AA-SYN-PWY
//
UNIQUE-ID - PWY-6196
TYPES - SERINE-BIOSYNTHESIS
COMMON-NAME - serine racemization
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - O-28
CREDITS - |pujar|
PATHWAY-LINKS - (SER SERSYN-PWY)
PREDECESSORS - (DSERDEAM-RXN 5.1.1.18-RXN)
PREDECESSORS - (5.1.1.18-RXN)
REACTION-LAYOUT - (DSERDEAM-RXN (:LEFT-PRIMARIES D-SERINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PYRUVATE))
REACTION-LAYOUT - (5.1.1.18-RXN (:LEFT-PRIMARIES SER) (:DIRECTION :L2R) (:RIGHT-PRIMARIES D-SERINE))
REACTION-LIST - DSERDEAM-RXN
REACTION-LIST - 5.1.1.18-RXN
SYNONYMS - D serine biosynthesis
//
UNIQUE-ID - SERSYN-PWY
TYPES - SERINE-BIOSYNTHESIS
COMMON-NAME - serine biosynthesis
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - O-18
CREDITS - |riley|
IN-PATHWAY - SER-GLYSYN-PWY
PATHWAY-LINKS - (SER TRPSYN-PWY GLYSYN-PWY CYSTSYN-PWY)
PATHWAY-LINKS - (G3P GLYCOLYSIS)
PREDECESSORS - (PGLYCDEHYDROG-RXN)
PREDECESSORS - (PSERTRANSAM-RXN PGLYCDEHYDROG-RXN)
PREDECESSORS - (RXN0-5114 PSERTRANSAM-RXN)
REACTION-LAYOUT - (RXN0-5114 (:LEFT-PRIMARIES 3-P-SERINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SER))
REACTION-LAYOUT - (PGLYCDEHYDROG-RXN (:LEFT-PRIMARIES G3P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-P-HYDROXYPYRUVATE))
REACTION-LAYOUT - (PSERTRANSAM-RXN (:LEFT-PRIMARIES 3-P-SERINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 3-P-HYDROXYPYRUVATE))
REACTION-LIST - RXN0-5114
REACTION-LIST - PGLYCDEHYDROG-RXN
REACTION-LIST - PSERTRANSAM-RXN
SUPER-PATHWAYS - SER-GLYSYN-PWY
//
UNIQUE-ID - LEUSYN-PWY
TYPES - LEUCINE-SYN
COMMON-NAME - leucine biosynthesis
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - |caspi|
CREDITS - O-18
CREDITS - |riley|
CREDITS - SRI
CREDITS - |shearer|
IN-PATHWAY - BRANCHED-CHAIN-AA-SYN-PWY
PATHWAY-LINKS - (2-KETO-ISOVALERATE VALSYN-PWY)
PREDECESSORS - (3-ISOPROPYLMALISOM-RXN 2-ISOPROPYLMALATESYN-RXN)
PREDECESSORS - (RXN-8991 3-ISOPROPYLMALISOM-RXN)
PREDECESSORS - (3-ISOPROPYLMALDEHYDROG-RXN RXN-8991)
PREDECESSORS - (BRANCHED-CHAINAMINOTRANSFERLEU-RXN RXN-7800)
PREDECESSORS - (RXN-7800 3-ISOPROPYLMALDEHYDROG-RXN)
REACTION-LAYOUT - (RXN-8991 (:LEFT-PRIMARIES 2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CPD-9451))
REACTION-LAYOUT - (RXN-7800 (:LEFT-PRIMARIES CPD-7100) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2K-4CH3-PENTANOATE))
REACTION-LAYOUT - (2-ISOPROPYLMALATESYN-RXN (:LEFT-PRIMARIES 2-KETO-ISOVALERATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-CARBOXY-3-HYDROXY-ISOCAPROATE))
REACTION-LAYOUT - (3-ISOPROPYLMALISOM-RXN (:LEFT-PRIMARIES 3-CARBOXY-3-HYDROXY-ISOCAPROATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9451))
REACTION-LAYOUT - (BRANCHED-CHAINAMINOTRANSFERLEU-RXN (:LEFT-PRIMARIES LEU) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 2K-4CH3-PENTANOATE))
REACTION-LAYOUT - (3-ISOPROPYLMALDEHYDROG-RXN (:LEFT-PRIMARIES 2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7100))
REACTION-LIST - RXN-8991
REACTION-LIST - RXN-7800
REACTION-LIST - 2-ISOPROPYLMALATESYN-RXN
REACTION-LIST - 3-ISOPROPYLMALISOM-RXN
REACTION-LIST - BRANCHED-CHAINAMINOTRANSFERLEU-RXN
REACTION-LIST - 3-ISOPROPYLMALDEHYDROG-RXN
SUPER-PATHWAYS - BRANCHED-CHAIN-AA-SYN-PWY
//
UNIQUE-ID - CYSTSYN-PWY
TYPES - CYSTEINE-SYN
COMMON-NAME - cysteine biosynthesis I
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (SER SERSYN-PWY)
PREDECESSORS - (ACSERLY-RXN SERINE-O-ACETTRAN-RXN)
PREDECESSORS - (SERINE-O-ACETTRAN-RXN)
PRIMARIES - (ACSERLY-RXN NIL (CYS))
REACTION-LAYOUT - (ACSERLY-RXN (:LEFT-PRIMARIES ACETYLSERINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CYS))
REACTION-LAYOUT - (SERINE-O-ACETTRAN-RXN (:LEFT-PRIMARIES SER) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ACETYLSERINE))
REACTION-LIST - ACSERLY-RXN
REACTION-LIST - SERINE-O-ACETTRAN-RXN
//
UNIQUE-ID - GLYSYN-ALA-PWY
TYPES - GLYCINE-SYN
COMMON-NAME - glycine biosynthesis III
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - |hong|
CREDITS - O-16
CREDITS - |krieger|
PATHWAY-LINKS - (GLYOX GLYOXYLATE-BYPASS)
PREDECESSORS - (ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN)
PRIMARIES - (ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN (GLYOX) (GLY))
REACTION-LAYOUT - (ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN (:LEFT-PRIMARIES GLYOX) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLY))
REACTION-LIST - ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN
//
UNIQUE-ID - GLYSYN-THR-PWY
TYPES - GLYCINE-SYN
COMMON-NAME - glycine biosynthesis IV
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - SRI
CREDITS - |caspi|
CREDITS - |hong|
CREDITS - O-16
CREDITS - |krieger|
PATHWAY-LINKS - (THR THRESYN-PWY)
PREDECESSORS - (THREONINE-ALDOLASE-RXN)
PRIMARIES - (THREONINE-ALDOLASE-RXN (THR) (GLY))
REACTION-LAYOUT - (THREONINE-ALDOLASE-RXN (:LEFT-PRIMARIES THR) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLY))
REACTION-LIST - THREONINE-ALDOLASE-RXN
//
UNIQUE-ID - GLYSYN-PWY
TYPES - GLYCINE-SYN
COMMON-NAME - glycine biosynthesis I
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |caspi|
CREDITS - O-18
CREDITS - |riley|
IN-PATHWAY - SER-GLYSYN-PWY
PATHWAY-LINKS - (SER SERSYN-PWY)
PREDECESSORS - (GLYOHMETRANS-RXN)
PRIMARIES - (GLYOHMETRANS-RXN (SER) (GLY))
REACTION-LAYOUT - (GLYOHMETRANS-RXN (:LEFT-PRIMARIES SER) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLY))
REACTION-LIST - GLYOHMETRANS-RXN
SUPER-PATHWAYS - SER-GLYSYN-PWY
//
UNIQUE-ID - TRPSYN-PWY
TYPES - TRYPTOPHAN-BIOSYNTHESIS
COMMON-NAME - tryptophan biosynthesis
CITATIONS - :EV-COMP-AINF:3497824358:liya
PATHWAY-LINKS - (CHORISMATE ARO-PWY)
PREDECESSORS - (ANTHRANSYN-RXN)
PREDECESSORS - (PRTRANS-RXN ANTHRANSYN-RXN)
PREDECESSORS - (PRAISOM-RXN PRTRANS-RXN)
PREDECESSORS - (IGPSYN-RXN PRAISOM-RXN)
PREDECESSORS - (RXN0-2381 IGPSYN-RXN)
PREDECESSORS - (RXN0-2382 RXN0-2381)
PRIMARIES - (RXN0-2382 (INDOLE SER) (TRP))
REACTION-LAYOUT - (RXN0-2382 (:LEFT-PRIMARIES SER INDOLE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TRP))
REACTION-LAYOUT - (RXN0-2381 (:LEFT-PRIMARIES INDOLE-3-GLYCEROL-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INDOLE))
REACTION-LAYOUT - (ANTHRANSYN-RXN (:LEFT-PRIMARIES CHORISMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ANTHRANILATE))
REACTION-LAYOUT - (PRTRANS-RXN (:LEFT-PRIMARIES N-5-PHOSPHORIBOSYL-ANTHRANILATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES ANTHRANILATE))
REACTION-LAYOUT - (PRAISOM-RXN (:LEFT-PRIMARIES N-5-PHOSPHORIBOSYL-ANTHRANILATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CARBOXYPHENYLAMINO-DEOXYRIBULOSE-P))
REACTION-LAYOUT - (IGPSYN-RXN (:LEFT-PRIMARIES CARBOXYPHENYLAMINO-DEOXYRIBULOSE-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INDOLE-3-GLYCEROL-P))
REACTION-LIST - RXN0-2382
REACTION-LIST - RXN0-2381
REACTION-LIST - ANTHRANSYN-RXN
REACTION-LIST - PRTRANS-RXN
REACTION-LIST - PRAISOM-RXN
REACTION-LIST - IGPSYN-RXN
//
UNIQUE-ID - PWY-5441
TYPES - METHIONINE-SYN
COMMON-NAME - S-methylmethionine cycle
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |zhang|
PREDECESSORS - (MMUM-RXN METHIONINE-S-METHYLTRANSFERASE-RXN)
PREDECESSORS - (METHIONINE-S-METHYLTRANSFERASE-RXN MMUM-RXN)
PRIMARIES - (MMUM-RXN (CPD-397) (MET))
PRIMARIES - (METHIONINE-S-METHYLTRANSFERASE-RXN (MET) (CPD-397))
PRIMARIES - (HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN (HOMO-CYS) (MET))
REACTION-LAYOUT - (MMUM-RXN (:LEFT-PRIMARIES CPD-397) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MET))
REACTION-LAYOUT - (METHIONINE-S-METHYLTRANSFERASE-RXN (:LEFT-PRIMARIES MET) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-397))
REACTION-LIST - MMUM-RXN
REACTION-LIST - METHIONINE-S-METHYLTRANSFERASE-RXN
SYNONYMS - SMM cycle
//
UNIQUE-ID - PWY-702
TYPES - METHIONINE-SYN
COMMON-NAME - methionine biosynthesis II
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |zhang|
IN-PATHWAY - PWY-724
PATHWAY-LINKS - (HOMO-SER HOMOSERSYN-PWY)
PREDECESSORS - (MMUM-RXN CYSTATHIONINE-BETA-LYASE-RXN)
PREDECESSORS - (HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN CYSTATHIONINE-BETA-LYASE-RXN)
PREDECESSORS - (CYSPH-RXN HOMOSERKIN-RXN)
PREDECESSORS - (CYSTATHIONINE-BETA-LYASE-RXN CYSPH-RXN)
PREDECESSORS - (HOMOCYSMET-RXN CYSTATHIONINE-BETA-LYASE-RXN)
PRIMARIES - (MMUM-RXN (HOMO-CYS) (MET))
PRIMARIES - (HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN (HOMO-CYS) (MET))
PRIMARIES - (HOMOCYSMET-RXN (HOMO-CYS) (MET))
PRIMARIES - (CYSTATHIONINE-BETA-LYASE-RXN (L-CYSTATHIONINE) (HOMO-CYS))
PRIMARIES - (CYSPH-RXN (O-PHOSPHO-L-HOMOSERINE) (L-CYSTATHIONINE))
PRIMARIES - (HOMOSERKIN-RXN (HOMO-SER) (O-PHOSPHO-L-HOMOSERINE))
REACTION-LAYOUT - (MMUM-RXN (:LEFT-PRIMARIES HOMO-CYS) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MET))
REACTION-LAYOUT - (HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN (:LEFT-PRIMARIES HOMO-CYS) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MET))
REACTION-LAYOUT - (HOMOCYSMET-RXN (:LEFT-PRIMARIES HOMO-CYS) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MET))
REACTION-LAYOUT - (CYSTATHIONINE-BETA-LYASE-RXN (:LEFT-PRIMARIES L-CYSTATHIONINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HOMO-CYS))
REACTION-LAYOUT - (CYSPH-RXN (:LEFT-PRIMARIES O-PHOSPHO-L-HOMOSERINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-CYSTATHIONINE))
REACTION-LAYOUT - (HOMOSERKIN-RXN (:LEFT-PRIMARIES HOMO-SER) (:DIRECTION :L2R) (:RIGHT-PRIMARIES O-PHOSPHO-L-HOMOSERINE))
REACTION-LIST - MMUM-RXN
REACTION-LIST - HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN
REACTION-LIST - HOMOCYSMET-RXN
REACTION-LIST - CYSTATHIONINE-BETA-LYASE-RXN
REACTION-LIST - CYSPH-RXN
REACTION-LIST - HOMOSERKIN-RXN
SUPER-PATHWAYS - PWY-724
SYNONYMS - methionine biosynthesis from homoserine II
//
UNIQUE-ID - PWY-5041
TYPES - S-adenosyl-L-methionine-cycle
COMMON-NAME - S-adenosyl-L-methionine cycle II
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |caspi|
KEY-REACTIONS - ADENOSYLHOMOCYSTEINASE-RXN
PREDECESSORS - (S-ADENMETSYN-RXN HOMOCYSMET-RXN)
PREDECESSORS - (RXN-7605 S-ADENMETSYN-RXN)
PREDECESSORS - (ADENOSYLHOMOCYSTEINASE-RXN RXN-7605)
PREDECESSORS - (HOMOCYSMET-RXN ADENOSYLHOMOCYSTEINASE-RXN)
PRIMARIES - (HOMOCYSMET-RXN (HOMO-CYS) (MET))
PRIMARIES - (RXN-6301 (HOMO-CYS) (MET))
PRIMARIES - (RXN-7605 (S-ADENOSYLMETHIONINE) (ADENOSYL-HOMO-CYS))
PRIMARIES - (HOMOCYSMETB12-RXN (HOMO-CYS) (MET))
PRIMARIES - (ADENOSYLHOMOCYSTEINASE-RXN (ADENOSYL-HOMO-CYS) (HOMO-CYS))
PRIMARIES - (S-ADENMETSYN-RXN (MET) (S-ADENOSYLMETHIONINE))
REACTION-LAYOUT - (HOMOCYSMET-RXN (:LEFT-PRIMARIES HOMO-CYS) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MET))
REACTION-LAYOUT - (RXN-7605 (:LEFT-PRIMARIES S-ADENOSYLMETHIONINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ADENOSYL-HOMO-CYS))
REACTION-LAYOUT - (ADENOSYLHOMOCYSTEINASE-RXN (:LEFT-PRIMARIES ADENOSYL-HOMO-CYS) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HOMO-CYS))
REACTION-LAYOUT - (S-ADENMETSYN-RXN (:LEFT-PRIMARIES MET) (:DIRECTION :L2R) (:RIGHT-PRIMARIES S-ADENOSYLMETHIONINE))
REACTION-LIST - HOMOCYSMET-RXN
REACTION-LIST - RXN-7605
REACTION-LIST - ADENOSYLHOMOCYSTEINASE-RXN
REACTION-LIST - S-ADENMETSYN-RXN
SYNONYMS - activated methyl cycle
SYNONYMS - SAM cycle
//
UNIQUE-ID - ILEUSYN-PWY
TYPES - ISOLEUCINE-SYN
COMMON-NAME - isoleucine biosynthesis I (from threonine)
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - O-18
CREDITS - |riley|
CREDITS - SRI
CREDITS - |shearer|
IN-PATHWAY - BRANCHED-CHAIN-AA-SYN-PWY
IN-PATHWAY - PWY-3001
PATHWAY-LINKS - (THR HOMOSER-THRESYN-PWY)
PREDECESSORS - (THREDEHYD-RXN)
PREDECESSORS - (ACETOOHBUTSYN-RXN THREDEHYD-RXN)
PREDECESSORS - (ACETOOHBUTREDUCTOISOM-RXN ACETOOHBUTSYN-RXN)
PREDECESSORS - (DIHYDROXYMETVALDEHYDRAT-RXN ACETOOHBUTREDUCTOISOM-RXN)
PREDECESSORS - (BRANCHED-CHAINAMINOTRANSFERILEU-RXN DIHYDROXYMETVALDEHYDRAT-RXN)
REACTION-LAYOUT - (THREDEHYD-RXN (:LEFT-PRIMARIES THR) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-OXOBUTANOATE))
REACTION-LAYOUT - (ACETOOHBUTSYN-RXN (:LEFT-PRIMARIES 2-OXOBUTANOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-ACETO-2-HYDROXY-BUTYRATE))
REACTION-LAYOUT - (ACETOOHBUTREDUCTOISOM-RXN (:LEFT-PRIMARIES 2-ACETO-2-HYDROXY-BUTYRATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 1-KETO-2-METHYLVALERATE))
REACTION-LAYOUT - (BRANCHED-CHAINAMINOTRANSFERILEU-RXN (:LEFT-PRIMARIES ILE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 2-KETO-3-METHYL-VALERATE))
REACTION-LAYOUT - (DIHYDROXYMETVALDEHYDRAT-RXN (:LEFT-PRIMARIES 1-KETO-2-METHYLVALERATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-KETO-3-METHYL-VALERATE))
REACTION-LIST - THREDEHYD-RXN
REACTION-LIST - ACETOOHBUTSYN-RXN
REACTION-LIST - ACETOOHBUTREDUCTOISOM-RXN
REACTION-LIST - BRANCHED-CHAINAMINOTRANSFERILEU-RXN
REACTION-LIST - DIHYDROXYMETVALDEHYDRAT-RXN
SUPER-PATHWAYS - BRANCHED-CHAIN-AA-SYN-PWY
SUPER-PATHWAYS - PWY-3001
//
UNIQUE-ID - HOMOSERSYN-PWY
TYPES - Other-Amino-Acid-Biosynthesis
COMMON-NAME - homoserine biosynthesis
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - |paley|
CREDITS - SRI
CREDITS - |shearer|
IN-PATHWAY - PWY-724
IN-PATHWAY - THRESYN-PWY
IN-PATHWAY - PWY-3001
PATHWAY-LINKS - (L-ASPARTATE ASPARTATESYN-PWY)
PATHWAY-LINKS - (HOMO-SER PWY-702 HOMOSER-THRESYN-PWY)
PREDECESSORS - (ASPARTATEKIN-RXN)
PREDECESSORS - (ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN ASPARTATEKIN-RXN)
PREDECESSORS - (HOMOSERDEHYDROG-RXN ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN)
REACTION-LAYOUT - (HOMOSERDEHYDROG-RXN (:LEFT-PRIMARIES HOMO-SER) (:DIRECTION :R2L) (:RIGHT-PRIMARIES L-ASPARTATE-SEMIALDEHYDE))
REACTION-LAYOUT - (ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN (:LEFT-PRIMARIES L-ASPARTATE-SEMIALDEHYDE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES L-BETA-ASPARTYL-P))
REACTION-LAYOUT - (ASPARTATEKIN-RXN (:LEFT-PRIMARIES L-ASPARTATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-BETA-ASPARTYL-P))
REACTION-LIST - HOMOSERDEHYDROG-RXN
REACTION-LIST - ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN
REACTION-LIST - ASPARTATEKIN-RXN
SUPER-PATHWAYS - PWY-724
SUPER-PATHWAYS - THRESYN-PWY
SUPER-PATHWAYS - PWY-3001
//
UNIQUE-ID - PWY-5957
TYPES - Other-Amino-Acid-Biosynthesis
COMMON-NAME - nicotianamine biosynthesis
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - O-27
CREDITS - |pujar|
PREDECESSORS - (2.5.1.43-RXN)
PRIMARIES - (2.5.1.43-RXN (S-ADENOSYLMETHIONINE) (CPD-463))
REACTION-LAYOUT - (2.5.1.43-RXN (:LEFT-PRIMARIES S-ADENOSYLMETHIONINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-463))
REACTION-LIST - 2.5.1.43-RXN
SYNONYMS - NA biosynthesis
//
UNIQUE-ID - CITRULBIO-PWY
TYPES - Citrulline-Biosynthesis
COMMON-NAME - citrulline biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (PRO PROSYN-PWY)
PATHWAY-LINKS - (GLN (GLNSYN-PWY . :INCOMING))
PREDECESSORS - (GLUTKIN-RXN GLUTAMIN-RXN)
PREDECESSORS - (GLUTSEMIALDEHYDROG-RXN GLUTKIN-RXN)
PREDECESSORS - (ORNITHINE-GLU-AMINOTRANSFORASE-RXN GLUTSEMIALDEHYDROG-RXN)
PREDECESSORS - (ORNCARBAMTRANSFER-RXN ARGINASE-RXN)
PREDECESSORS - (ORNCARBAMTRANSFER-RXN ORNITHINE-GLU-AMINOTRANSFORASE-RXN)
PREDECESSORS - (ORNITHINE-GLU-AMINOTRANSFORASE-RXN SPONTPRO-RXN)
PREDECESSORS - (SPONTPRO-RXN RXN-821)
REACTION-LAYOUT - (RXN-821 (:LEFT-PRIMARIES PRO) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-DELTA1-PYRROLINE_5-CARBOXYLATE))
REACTION-LAYOUT - (GLUTSEMIALDEHYDROG-RXN (:LEFT-PRIMARIES L-GLUTAMATE_GAMMA-SEMIALDEHYDE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES L-GLUTAMATE-5-P))
REACTION-LAYOUT - (GLUTKIN-RXN (:LEFT-PRIMARIES GLT) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-GLUTAMATE-5-P))
REACTION-LAYOUT - (ORNCARBAMTRANSFER-RXN (:LEFT-PRIMARIES L-ORNITHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-CITRULLINE))
REACTION-LAYOUT - (ORNITHINE-GLU-AMINOTRANSFORASE-RXN (:LEFT-PRIMARIES L-ORNITHINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES L-GLUTAMATE_GAMMA-SEMIALDEHYDE GLT))
REACTION-LAYOUT - (SPONTPRO-RXN (:LEFT-PRIMARIES L-GLUTAMATE_GAMMA-SEMIALDEHYDE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES L-DELTA1-PYRROLINE_5-CARBOXYLATE))
REACTION-LAYOUT - (ARGINASE-RXN (:LEFT-PRIMARIES ARG) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-ORNITHINE))
REACTION-LAYOUT - (GLUTAMIN-RXN (:LEFT-PRIMARIES GLN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLT))
REACTION-LIST - RXN-821
REACTION-LIST - GLUTSEMIALDEHYDROG-RXN
REACTION-LIST - GLUTKIN-RXN
REACTION-LIST - ORNCARBAMTRANSFER-RXN
REACTION-LIST - ORNITHINE-GLU-AMINOTRANSFORASE-RXN
REACTION-LIST - SPONTPRO-RXN
REACTION-LIST - ARGINASE-RXN
REACTION-LIST - GLUTAMIN-RXN
//
UNIQUE-ID - PWY-6120
TYPES - TYROSINE-SYN
COMMON-NAME - tyrosine biosynthesis III
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - SRI
CREDITS - |caspi|
KEY-REACTIONS - CYCLOHEXADIENYL-DEHYDROGENASE-RXN
PATHWAY-LINKS - (CHORISMATE ARO-PWY)
PREDECESSORS - (CYCLOHEXADIENYL-DEHYDROGENASE-RXN PREPHENATE-TRANSAMINE-RXN)
PREDECESSORS - (PREPHENATE-TRANSAMINE-RXN CHORISMATEMUT-RXN)
PRIMARIES - (CYCLOHEXADIENYL-DEHYDROGENASE-RXN (CPD-659) (TYR))
PRIMARIES - (RXN-5682 (CPD-659) (TYR))
PRIMARIES - (RXN-5681 (CPD-659) (TYR))
PRIMARIES - (PREPHENATE-TRANSAMINE-RXN (PREPHENATE) (CPD-659))
PRIMARIES - (CARBOXYCYCLOHEXADIENYL-DEHYDRATASE-RXN (CPD-659) (PHE))
PRIMARIES - (CHORISMATEMUT-RXN (CHORISMATE) (PREPHENATE))
REACTION-LAYOUT - (CYCLOHEXADIENYL-DEHYDROGENASE-RXN (:LEFT-PRIMARIES CPD-659) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TYR))
REACTION-LAYOUT - (PREPHENATE-TRANSAMINE-RXN (:LEFT-PRIMARIES PREPHENATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-659))
REACTION-LAYOUT - (CHORISMATEMUT-RXN (:LEFT-PRIMARIES CHORISMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PREPHENATE))
REACTION-LIST - CYCLOHEXADIENYL-DEHYDROGENASE-RXN
REACTION-LIST - PREPHENATE-TRANSAMINE-RXN
REACTION-LIST - CHORISMATEMUT-RXN
//
UNIQUE-ID - ASPARAGINE-BIOSYNTHESIS
TYPES - ASPARAGINE-SYN
COMMON-NAME - asparagine biosynthesis I
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |fulcher|
PATHWAY-LINKS - (L-ASPARTATE ASPARTATESYN-PWY)
PREDECESSORS - (ASNSYNB-RXN)
PRIMARIES - (ASPAMINOTRANS-RXN (OXALACETIC_ACID) (L-ASPARTATE))
REACTION-LAYOUT - (ASNSYNB-RXN (:LEFT-PRIMARIES L-ASPARTATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ASN))
REACTION-LIST - ASNSYNB-RXN
//
UNIQUE-ID - ASPARTATESYN-PWY
TYPES - ASPARTATE-SYN
COMMON-NAME - aspartate biosynthesis
CREDITS - O-18
CREDITS - |riley|
CREDITS - |ingraham|
CREDITS - O0-3
CREDITS - SRI
CREDITS - |fulcher|
IN-PATHWAY - THRESYN-PWY
IN-PATHWAY - PWY-3001
PATHWAY-LINKS - (L-ASPARTATE PANTO-PWY |Amino-Acid-Biosynthesis| PYRIDNUCSYN-PWY PWY0-162 HOMOSERSYN-PWY)
PREDECESSORS - (ASPAMINOTRANS-RXN)
PRIMARIES - (ASPAMINOTRANS-RXN NIL (L-ASPARTATE))
REACTION-LAYOUT - (ASPAMINOTRANS-RXN (:LEFT-PRIMARIES L-ASPARTATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES OXALACETIC_ACID))
REACTION-LIST - ASPAMINOTRANS-RXN
SUPER-PATHWAYS - THRESYN-PWY
SUPER-PATHWAYS - PWY-3001
SYNONYMS - aspartate biosynthesis and degradation
//
UNIQUE-ID - PWY0-1021
TYPES - ALANINE-SYN
COMMON-NAME - alanine biosynthesis III
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - O0-3
CREDITS - |ingraham|
CREDITS - SRI
CREDITS - |shearer|
PREDECESSORS - (RXN0-308)
PRIMARIES - (RXN0-308 (CYS) (L-ALPHA-ALANINE))
REACTION-LAYOUT - (RXN0-308 (:LEFT-PRIMARIES CYS) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-ALPHA-ALANINE))
REACTION-LIST - RXN0-308
//
UNIQUE-ID - ALANINE-SYN2-PWY
TYPES - ALANINE-SYN
COMMON-NAME - alanine biosynthesis II
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - O0-3
CREDITS - |ingraham|
CREDITS - SRI
CREDITS - |shearer|
PREDECESSORS - (ALANINE-AMINOTRANSFERASE-RXN)
PRIMARIES - (ALANINE-AMINOTRANSFERASE-RXN NIL (L-ALPHA-ALANINE))
REACTION-LAYOUT - (ALANINE-AMINOTRANSFERASE-RXN (:LEFT-PRIMARIES L-ALPHA-ALANINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PYRUVATE))
REACTION-LIST - ALANINE-AMINOTRANSFERASE-RXN
//
UNIQUE-ID - PWY-5687
TYPES - PYR-NUC-SYN
COMMON-NAME - pyrimidine ribonucleotides interconversion
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |hartmut|
CREDITS - SRI
CREDITS - |caspi|
IN-PATHWAY - PWY0-162
PATHWAY-LINKS - (UMP PWY-5686)
PREDECESSORS - (CTPSYN-RXN UDPKIN-RXN)
PREDECESSORS - (UDPKIN-RXN UMPKI-RXN)
PREDECESSORS - (CDPKIN-RXN CTPSYN-RXN)
PRIMARIES - (OROPRIBTRANS-RXN (PRPP OROTATE) NIL)
REACTION-LAYOUT - (CDPKIN-RXN (:LEFT-PRIMARIES CDP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CTP))
REACTION-LAYOUT - (CTPSYN-RXN (:LEFT-PRIMARIES UTP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CTP))
REACTION-LAYOUT - (UDPKIN-RXN (:LEFT-PRIMARIES UDP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UTP))
REACTION-LAYOUT - (UMPKI-RXN (:LEFT-PRIMARIES UMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP))
REACTION-LIST - CDPKIN-RXN
REACTION-LIST - CTPSYN-RXN
REACTION-LIST - UDPKIN-RXN
REACTION-LIST - UMPKI-RXN
SUPER-PATHWAYS - PWY0-162
SYNONYMS - pyrimidine biosynthesis
//
UNIQUE-ID - PWY0-163
TYPES - Pyrimidine-Nucleotide-Salvage
COMMON-NAME - salvage pathways of pyrimidine ribonucleotides
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - |ingraham|
CREDITS - O0-3
CREDITS - SRI
CREDITS - |arnaud|
PATHWAY-LINKS - (UMP PWY0-162)
PREDECESSORS - (URKI-RXN CYTIDEAM2-RXN)
PREDECESSORS - (URPHOS-RXN CYTIDEAM2-RXN)
PREDECESSORS - (CYTIDINEKIN-RXN)
PREDECESSORS - (CMPKI-RXN CYTIDINEKIN-RXN)
PREDECESSORS - (CDPKIN-RXN CMPKI-RXN)
PREDECESSORS - (URACIL-PRIBOSYLTRANS-RXN CYTDEAM-RXN)
PREDECESSORS - (URACIL-PRIBOSYLTRANS-RXN URPHOS-RXN)
REACTION-LAYOUT - (CYTIDINEKIN-RXN (:LEFT-PRIMARIES CYTIDINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CMP))
REACTION-LAYOUT - (URKI-RXN (:LEFT-PRIMARIES URIDINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UMP))
REACTION-LAYOUT - (CYTDEAM-RXN (:LEFT-PRIMARIES CYTOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES URACIL))
REACTION-LAYOUT - (CYTIDEAM2-RXN (:LEFT-PRIMARIES CYTIDINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES URIDINE))
REACTION-LAYOUT - (URPHOS-RXN (:LEFT-PRIMARIES URIDINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES URACIL))
REACTION-LAYOUT - (CMPKI-RXN (:LEFT-PRIMARIES CMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CDP))
REACTION-LAYOUT - (CDPKIN-RXN (:LEFT-PRIMARIES CDP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CTP))
REACTION-LAYOUT - (URACIL-PRIBOSYLTRANS-RXN (:LEFT-PRIMARIES UMP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES URACIL))
REACTION-LIST - CYTIDINEKIN-RXN
REACTION-LIST - URKI-RXN
REACTION-LIST - CYTDEAM-RXN
REACTION-LIST - CYTIDEAM2-RXN
REACTION-LIST - URPHOS-RXN
REACTION-LIST - CMPKI-RXN
REACTION-LIST - CDPKIN-RXN
REACTION-LIST - URACIL-PRIBOSYLTRANS-RXN
SYNONYMS - pyrimidine ribonucleotide/ribonucleoside metabolism
//
UNIQUE-ID - PWY0-181
TYPES - Pyrimidine-Nucleotide-Salvage
COMMON-NAME - salvage pathways of pyrimidine deoxyribonucleotides
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - |ingraham|
CREDITS - O0-3
CREDITS - SRI
CREDITS - |arnaud|
PREDECESSORS - (THYKI-RXN THYM-PHOSPH-RXN)
PREDECESSORS - (THYM-PHOSPH-RXN URA-PHOSPH-RXN)
PREDECESSORS - (URA-PHOSPH-RXN CYTIDEAM-RXN)
PREDECESSORS - (DURIDKI-RXN CYTIDEAM-RXN)
REACTION-LAYOUT - (THYKI-RXN (:LEFT-PRIMARIES THYMIDINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TMP))
REACTION-LAYOUT - (THYM-PHOSPH-RXN (:LEFT-PRIMARIES THYMIDINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DEOXY-RIBOSE-1P))
REACTION-LAYOUT - (URA-PHOSPH-RXN (:LEFT-PRIMARIES DEOXYURIDINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DEOXY-RIBOSE-1P))
REACTION-LAYOUT - (DURIDKI-RXN (:LEFT-PRIMARIES DEOXYURIDINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DUMP))
REACTION-LAYOUT - (CYTIDEAM-RXN (:LEFT-PRIMARIES DEOXYCYTIDINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DEOXYURIDINE))
REACTION-LIST - THYKI-RXN
REACTION-LIST - THYM-PHOSPH-RXN
REACTION-LIST - URA-PHOSPH-RXN
REACTION-LIST - DURIDKI-RXN
REACTION-LIST - CYTIDEAM-RXN
SYNONYMS - deoxypyrimidine nucleotide/nucleoside metabolism
//
UNIQUE-ID - PWY-5686
TYPES - Pyrimidine-De-Novo-Biosyn
COMMON-NAME - uridine-5'-phosphate biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |hartmut|
CREDITS - SRI
CREDITS - |caspi|
IN-PATHWAY - PWY0-162
PATHWAY-LINKS - (UMP PWY-5687)
PATHWAY-LINKS - (PRPP (|FRPP-Biosynthesis| . :INCOMING))
PATHWAY-LINKS - (CARBAMOYL-P ARGININE-SYN)
PREDECESSORS - (OROTPDECARB-RXN OROPRIBTRANS-RXN)
PREDECESSORS - (OROPRIBTRANS-RXN DIHYDROOROTATE-DEHYDROGENASE-RXN)
PREDECESSORS - (DIHYDROOROTATE-DEHYDROGENASE-RXN DIHYDROOROT-RXN)
PREDECESSORS - (DIHYDROOROT-RXN ASPCARBTRANS-RXN)
PREDECESSORS - (ASPCARBTRANS-RXN CARBPSYN-RXN)
PREDECESSORS - (CARBPSYN-RXN)
PRIMARIES - (OROPRIBTRANS-RXN (PRPP OROTATE) NIL)
REACTION-LAYOUT - (OROTPDECARB-RXN (:LEFT-PRIMARIES OROTIDINE-5-PHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UMP))
REACTION-LAYOUT - (OROPRIBTRANS-RXN (:LEFT-PRIMARIES OROTIDINE-5-PHOSPHATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES OROTATE PRPP))
REACTION-LAYOUT - (DIHYDROOROTATE-DEHYDROGENASE-RXN (:LEFT-PRIMARIES DI-H-OROTATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OROTATE))
REACTION-LAYOUT - (DIHYDROOROT-RXN (:LEFT-PRIMARIES DI-H-OROTATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CARBAMYUL-L-ASPARTATE))
REACTION-LAYOUT - (ASPCARBTRANS-RXN (:LEFT-PRIMARIES CARBAMOYL-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CARBAMYUL-L-ASPARTATE))
REACTION-LAYOUT - (CARBPSYN-RXN (:LEFT-PRIMARIES HCO3) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CARBAMOYL-P))
REACTION-LIST - OROTPDECARB-RXN
REACTION-LIST - OROPRIBTRANS-RXN
REACTION-LIST - DIHYDROOROTATE-DEHYDROGENASE-RXN
REACTION-LIST - DIHYDROOROT-RXN
REACTION-LIST - ASPCARBTRANS-RXN
REACTION-LIST - CARBPSYN-RXN
SUPER-PATHWAYS - PWY0-162
SYNONYMS - pyrimidine biosynthesis
SYNONYMS - de novo biosynthesis of uridine-5'-phosphate
SYNONYMS - de novo biosynthesis of uridine-5'-monophosphate
//
UNIQUE-ID - PWY-6124
TYPES - IMP-Biosynthesis
COMMON-NAME - inosine-5'-phosphate biosynthesis II
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |caspi|
IN-PATHWAY - PWY-841
PATHWAY-LINKS - (5-PHOSPHORIBOSYL-5-AMINOIMIDAZOLE (|AIR-Biosynthesis| . :INCOMING))
PREDECESSORS - (SAICARSYN-RXN AIRCARBOXY-RXN)
PREDECESSORS - (AICARSYN-RXN SAICARSYN-RXN)
PREDECESSORS - (AICARTRANSFORM-RXN AICARSYN-RXN)
PREDECESSORS - (IMPCYCLOHYDROLASE-RXN AICARTRANSFORM-RXN)
PRIMARIES - (AMPSYN-RXN (ADENYLOSUCC) (AMP))
REACTION-LAYOUT - (IMPCYCLOHYDROLASE-RXN (:LEFT-PRIMARIES IMP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PHOSPHORIBOSYL-FORMAMIDO-CARBOXAMIDE))
REACTION-LAYOUT - (AICARTRANSFORM-RXN (:LEFT-PRIMARIES AICAR) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHORIBOSYL-FORMAMIDO-CARBOXAMIDE))
REACTION-LAYOUT - (AICARSYN-RXN (:LEFT-PRIMARIES P-RIBOSYL-4-SUCCCARB-AMINOIMIDAZOLE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AICAR))
REACTION-LAYOUT - (SAICARSYN-RXN (:LEFT-PRIMARIES PHOSPHORIBOSYL-CARBOXY-AMINOIMIDAZOLE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES P-RIBOSYL-4-SUCCCARB-AMINOIMIDAZOLE))
REACTION-LAYOUT - (AIRCARBOXY-RXN (:LEFT-PRIMARIES PHOSPHORIBOSYL-CARBOXY-AMINOIMIDAZOLE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 5-PHOSPHORIBOSYL-5-AMINOIMIDAZOLE))
REACTION-LIST - IMPCYCLOHYDROLASE-RXN
REACTION-LIST - AICARTRANSFORM-RXN
REACTION-LIST - AICARSYN-RXN
REACTION-LIST - SAICARSYN-RXN
REACTION-LIST - AIRCARBOXY-RXN
SUPER-PATHWAYS - PWY-841
SYNONYMS - IMP biosynthesis II
//
UNIQUE-ID - PWY-6121
TYPES - AIR-Biosynthesis
COMMON-NAME - 5-aminoimidazole ribonucleotide biosynthesis I
CREDITS - SRI
CREDITS - |caspi|
IN-PATHWAY - PWY-6277
IN-PATHWAY - PWY-841
PATHWAY-LINKS - (PRPP PWY0-662)
PATHWAY-LINKS - (5-PHOSPHORIBOSYL-5-AMINOIMIDAZOLE PWY-841)
PREDECESSORS - (GLYRIBONUCSYN-RXN PRPPAMIDOTRANS-RXN)
PREDECESSORS - (GART-RXN GLYRIBONUCSYN-RXN)
PREDECESSORS - (FGAMSYN-RXN GART-RXN)
PREDECESSORS - (AIRS-RXN FGAMSYN-RXN)
PRIMARIES - (AMPSYN-RXN (ADENYLOSUCC) (AMP))
REACTION-LAYOUT - (AIRS-RXN (:LEFT-PRIMARIES 5-PHOSPHORIBOSYL-N-FORMYLGLYCINEAMIDINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-PHOSPHORIBOSYL-5-AMINOIMIDAZOLE))
REACTION-LAYOUT - (FGAMSYN-RXN (:LEFT-PRIMARIES 5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-PHOSPHORIBOSYL-N-FORMYLGLYCINEAMIDINE))
REACTION-LAYOUT - (GART-RXN (:LEFT-PRIMARIES 5-PHOSPHO-RIBOSYL-GLYCINEAMIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE))
REACTION-LAYOUT - (GLYRIBONUCSYN-RXN (:LEFT-PRIMARIES 5-P-BETA-D-RIBOSYL-AMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-PHOSPHO-RIBOSYL-GLYCINEAMIDE))
REACTION-LAYOUT - (PRPPAMIDOTRANS-RXN (:LEFT-PRIMARIES 5-P-BETA-D-RIBOSYL-AMINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PRPP))
REACTION-LIST - AIRS-RXN
REACTION-LIST - FGAMSYN-RXN
REACTION-LIST - GART-RXN
REACTION-LIST - GLYRIBONUCSYN-RXN
REACTION-LIST - PRPPAMIDOTRANS-RXN
SUPER-PATHWAYS - PWY-841
SUPER-PATHWAYS - PWY-6277
//
UNIQUE-ID - PWY-6122
TYPES - AIR-Biosynthesis
COMMON-NAME - 5-aminoimidazole ribonucleotide biosynthesis II
CITATIONS - :EV-COMP-AINF:3498595969:jaiswalp
CREDITS - SRI
CREDITS - |caspi|
IN-PATHWAY - PWY-6277
PATHWAY-LINKS - (PRPP PWY0-662 PWY0-661)
PATHWAY-LINKS - (5-PHOSPHORIBOSYL-5-AMINOIMIDAZOLE DENOVOPURINE2-PWY PWY-841 THISYN-PWY)
PREDECESSORS - (FGAMSYN-RXN GARTRANSFORMYL2-RXN)
PREDECESSORS - (GARTRANSFORMYL2-RXN GLYRIBONUCSYN-RXN)
PREDECESSORS - (GLYRIBONUCSYN-RXN PRPPAMIDOTRANS-RXN)
PREDECESSORS - (AIRS-RXN FGAMSYN-RXN)
PRIMARIES - (AMPSYN-RXN (ADENYLOSUCC) (AMP))
REACTION-LAYOUT - (GARTRANSFORMYL2-RXN (:LEFT-PRIMARIES 5-PHOSPHO-RIBOSYL-GLYCINEAMIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE))
REACTION-LAYOUT - (AIRS-RXN (:LEFT-PRIMARIES 5-PHOSPHORIBOSYL-N-FORMYLGLYCINEAMIDINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-PHOSPHORIBOSYL-5-AMINOIMIDAZOLE))
REACTION-LAYOUT - (FGAMSYN-RXN (:LEFT-PRIMARIES 5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-PHOSPHORIBOSYL-N-FORMYLGLYCINEAMIDINE))
REACTION-LAYOUT - (GLYRIBONUCSYN-RXN (:LEFT-PRIMARIES 5-P-BETA-D-RIBOSYL-AMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-PHOSPHO-RIBOSYL-GLYCINEAMIDE))
REACTION-LAYOUT - (PRPPAMIDOTRANS-RXN (:LEFT-PRIMARIES 5-P-BETA-D-RIBOSYL-AMINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PRPP))
REACTION-LIST - GARTRANSFORMYL2-RXN
REACTION-LIST - AIRS-RXN
REACTION-LIST - FGAMSYN-RXN
REACTION-LIST - GLYRIBONUCSYN-RXN
REACTION-LIST - PRPPAMIDOTRANS-RXN
//
UNIQUE-ID - PWY0-662
TYPES - PRPP-Biosynthesis
COMMON-NAME - PRPP biosynthesis I
CITATIONS - :EV-COMP-AINF:3497824359:liya
PREDECESSORS - (PRPPSYN-RXN)
REACTION-LAYOUT - (PRPPSYN-RXN (:LEFT-PRIMARIES RIBOSE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PRPP))
REACTION-LIST - PRPPSYN-RXN
SYNONYMS - 5-phosphoribosyl 1-pyrophosphate biosynthesis
//
UNIQUE-ID - TRESYN-PWY
TYPES - Trehalose-biosynthesis
COMMON-NAME - trehalose biosynthesis I
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |caspi|
CREDITS - O-18
CREDITS - |riley|
PATHWAY-LINKS - (TREHALOSE PWY0-1182)
PREDECESSORS - (TREHALOSEPHOSPHA-RXN TREHALOSE6PSYN-RXN)
REACTION-LAYOUT - (TREHALOSEPHOSPHA-RXN (:LEFT-PRIMARIES TREHALOSE-6P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TREHALOSE))
REACTION-LAYOUT - (TREHALOSE6PSYN-RXN (:LEFT-PRIMARIES ALPHA-GLC-6-P UDP-GLUCOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TREHALOSE-6P))
REACTION-LIST - TREHALOSEPHOSPHA-RXN
REACTION-LIST - TREHALOSE6PSYN-RXN
SYNONYMS - trehalose biosynthesis
//
UNIQUE-ID - TRNA-CHARGING-PWY
TYPES - Metabolic-Clusters
TYPES - Aminoacyl-tRNAs-Charging
COMMON-NAME - tRNA charging pathway
CITATIONS - :EV-COMP-AINF:3497824359:liya
REACTION-LAYOUT - (GLYCINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES GLY |GLY-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-GLY-tRNAs|))
REACTION-LAYOUT - (HISTIDINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES HIS |HIS-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-HIS-tRNAs|))
REACTION-LAYOUT - (LYSINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES LYS |LYS-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-LYS-tRNAs|))
REACTION-LAYOUT - (METHIONINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES MET |MET-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-MET-tRNAs|))
REACTION-LAYOUT - (PHENYLALANINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES PHE |PHE-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-PHE-tRNAs|))
REACTION-LAYOUT - (PROLINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES |PRO-tRNAs| PRO) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-PRO-tRNAs|))
REACTION-LAYOUT - (SERINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES SER |SER-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-SER-tRNAs|))
REACTION-LAYOUT - (THREONINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES THR |THR-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-THR-tRNAs|))
REACTION-LAYOUT - (TRYPTOPHAN--TRNA-LIGASE-RXN (:LEFT-PRIMARIES TRP |TRP-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-TRP-tRNAs|))
REACTION-LAYOUT - (TYROSINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES |TYR-tRNAs| TYR) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-TYR-tRNAs|))
REACTION-LAYOUT - (ASPARTATE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES L-ASPARTATE |ASP-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-ASP-tRNAs|))
REACTION-LAYOUT - (ASPARAGINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES ASN |ASN-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-ASN-tRNAs|))
REACTION-LAYOUT - (ALANINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES L-ALPHA-ALANINE |ALA-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-ALA-tRNAs|))
REACTION-LAYOUT - (VALINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES VAL |VAL-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-VAL-tRNAs|))
REACTION-LAYOUT - (LEUCINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES |LEU-tRNAs| LEU) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-LEU-tRNAs|))
REACTION-LAYOUT - (ISOLEUCINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES ILE |ILE-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-ILE-tRNAs|))
REACTION-LAYOUT - (GLURS-RXN (:LEFT-PRIMARIES GLT |GLT-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-GLT-tRNAs|))
REACTION-LAYOUT - (GLUTAMINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES GLN |GLN-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-GLN-tRNAs|))
REACTION-LAYOUT - (CYSTEINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES CYS |CYS-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-CYS-tRNAs|))
REACTION-LAYOUT - (ARGININE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES ARG |ARG-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-ARG-tRNAs|))
REACTION-LIST - GLYCINE--TRNA-LIGASE-RXN
REACTION-LIST - HISTIDINE--TRNA-LIGASE-RXN
REACTION-LIST - LYSINE--TRNA-LIGASE-RXN
REACTION-LIST - METHIONINE--TRNA-LIGASE-RXN
REACTION-LIST - PHENYLALANINE--TRNA-LIGASE-RXN
REACTION-LIST - PROLINE--TRNA-LIGASE-RXN
REACTION-LIST - SERINE--TRNA-LIGASE-RXN
REACTION-LIST - THREONINE--TRNA-LIGASE-RXN
REACTION-LIST - TRYPTOPHAN--TRNA-LIGASE-RXN
REACTION-LIST - TYROSINE--TRNA-LIGASE-RXN
REACTION-LIST - ASPARTATE--TRNA-LIGASE-RXN
REACTION-LIST - ASPARAGINE--TRNA-LIGASE-RXN
REACTION-LIST - ALANINE--TRNA-LIGASE-RXN
REACTION-LIST - VALINE--TRNA-LIGASE-RXN
REACTION-LIST - LEUCINE--TRNA-LIGASE-RXN
REACTION-LIST - ISOLEUCINE--TRNA-LIGASE-RXN
REACTION-LIST - GLURS-RXN
REACTION-LIST - GLUTAMINE--TRNA-LIGASE-RXN
REACTION-LIST - CYSTEINE--TRNA-LIGASE-RXN
REACTION-LIST - ARGININE--TRNA-LIGASE-RXN
//
UNIQUE-ID - PWY-5337
TYPES - Oligosaccharides-Biosynthesis
COMMON-NAME - stachyose biosynthesis
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |tissier|
PREDECESSORS - (2.4.1.67-RXN 2.4.1.82-RXN)
PREDECESSORS - (2.4.1.82-RXN 2.4.1.123-RXN)
PREDECESSORS - (2.4.1.123-RXN)
PRIMARIES - (2.4.1.67-RXN (CPD-1099) (CPD-170))
PRIMARIES - (2.4.1.82-RXN (CPD-458) (CPD-1099))
PRIMARIES - (2.4.1.123-RXN (UDP-GALACTOSE) (CPD-458))
REACTION-LAYOUT - (2.4.1.67-RXN (:LEFT-PRIMARIES CPD-1099 CPD-458) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-170))
REACTION-LAYOUT - (2.4.1.82-RXN (:LEFT-PRIMARIES CPD-458) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-1099))
REACTION-LAYOUT - (2.4.1.123-RXN (:LEFT-PRIMARIES UDP-GALACTOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-458))
REACTION-LIST - 2.4.1.67-RXN
REACTION-LIST - 2.4.1.82-RXN
REACTION-LIST - 2.4.1.123-RXN
SYNONYMS - raffinose biosynthesis
//
UNIQUE-ID - MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS
TYPES - Oligosaccharides-Biosynthesis
COMMON-NAME - dolichyl-diphosphooligosaccharide biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - SRI
CREDITS - |fulcher|
PREDECESSORS - (RXN-5471 RXN-5470)
PREDECESSORS - (RXN-5469 RXN-5468)
PREDECESSORS - (RXN-5467 RXN-5466)
PREDECESSORS - (RXN-5465 RXN-5464)
PREDECESSORS - (RXN-5463 RXN-5462)
PREDECESSORS - (RXN-5462 2.4.1.142-RXN)
PREDECESSORS - (2.4.1.141-RXN 2.7.8.15-RXN)
PREDECESSORS - (2.4.1.142-RXN 2.4.1.141-RXN)
PREDECESSORS - (RXN-5464 RXN-5463)
PREDECESSORS - (RXN-5466 RXN-5465)
PREDECESSORS - (RXN-5468 RXN-5467)
PREDECESSORS - (RXN-5470 RXN-5469)
PREDECESSORS - (RXN-5472 RXN-5471)
PRIMARIES - (DOLICHOL-KINASE-RXN (DOLICHOL) (DOLICHOLP))
PRIMARIES - (2.4.1.117-RXN (DOLICHOLP) (CPD-166))
PRIMARIES - (2.4.1.83-RXN (DOLICHOLP) (CPD-171))
PRIMARIES - (RXN-5472 (CPD-5170) (OLIGOSACCHARIDE-DIPHOSPHODOLICHOL))
PRIMARIES - (RXN-5471 (CPD-5169) (CPD-5170))
PRIMARIES - (RXN-5470 (CPD-5168) (CPD-5169))
PRIMARIES - (RXN-5469 (CPD-5167) (CPD-5168))
PRIMARIES - (RXN-5468 (CPD-5166) (CPD-5167))
PRIMARIES - (RXN-5467 (CPD-5165) (CPD-5166))
PRIMARIES - (RXN-5466 (CPD-5164) (CPD-5165))
PRIMARIES - (RXN-5465 (CPD-5163) (CPD-5164))
PRIMARIES - (RXN-5464 (CPD-5162) (CPD-5163))
PRIMARIES - (RXN-5463 (CPD-5161) (CPD-5162))
PRIMARIES - (RXN-5462 (ALPHA-D-MANNOSYLCHITOBIO) (CPD-5161))
PRIMARIES - (2.4.1.142-RXN NIL (ALPHA-D-MANNOSYLCHITOBIO))
PRIMARIES - (2.7.8.15-RXN (DOLICHOLP))
REACTION-LAYOUT - (2.4.1.117-RXN (:LEFT-PRIMARIES DOLICHOLP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-166))
REACTION-LAYOUT - (2.4.1.83-RXN (:LEFT-PRIMARIES DOLICHOLP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-171))
REACTION-LAYOUT - (RXN-5472 (:LEFT-PRIMARIES CPD-166 CPD-5170) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DOLICHOLP OLIGOSACCHARIDE-DIPHOSPHODOLICHOL))
REACTION-LAYOUT - (RXN-5471 (:LEFT-PRIMARIES CPD-166 CPD-5169) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DOLICHOLP CPD-5170))
REACTION-LAYOUT - (RXN-5470 (:LEFT-PRIMARIES CPD-166 CPD-5168) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DOLICHOLP CPD-5169))
REACTION-LAYOUT - (RXN-5469 (:LEFT-PRIMARIES CPD-171 CPD-5167) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DOLICHOLP CPD-5168))
REACTION-LAYOUT - (RXN-5468 (:LEFT-PRIMARIES CPD-171 CPD-5166) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DOLICHOLP CPD-5167))
REACTION-LAYOUT - (RXN-5467 (:LEFT-PRIMARIES CPD-171 CPD-5165) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DOLICHOLP CPD-5166))
REACTION-LAYOUT - (RXN-5466 (:LEFT-PRIMARIES CPD-171 CPD-5164) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DOLICHOLP CPD-5165))
REACTION-LAYOUT - (RXN-5465 (:LEFT-PRIMARIES CPD-5163) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-5164))
REACTION-LAYOUT - (RXN-5464 (:LEFT-PRIMARIES CPD-5162) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-5163))
REACTION-LAYOUT - (RXN-5462 (:LEFT-PRIMARIES ALPHA-D-MANNOSYLCHITOBIO) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-5161))
REACTION-LAYOUT - (RXN-5463 (:LEFT-PRIMARIES CPD-5161) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-5162))
REACTION-LAYOUT - (2.4.1.142-RXN (:LEFT-PRIMARIES NN-DIACETYLCHITOBIOSYLDIPHOSPHODOLICHO) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALPHA-D-MANNOSYLCHITOBIO))
REACTION-LAYOUT - (2.4.1.141-RXN (:LEFT-PRIMARIES CPD-190) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NN-DIACETYLCHITOBIOSYLDIPHOSPHODOLICHO))
REACTION-LAYOUT - (2.7.8.15-RXN (:LEFT-PRIMARIES DOLICHOLP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-190))
REACTION-LIST - 2.4.1.117-RXN
REACTION-LIST - 2.4.1.83-RXN
REACTION-LIST - RXN-5472
REACTION-LIST - RXN-5471
REACTION-LIST - RXN-5470
REACTION-LIST - RXN-5469
REACTION-LIST - RXN-5468
REACTION-LIST - RXN-5467
REACTION-LIST - RXN-5466
REACTION-LIST - RXN-5465
REACTION-LIST - RXN-5464
REACTION-LIST - RXN-5462
REACTION-LIST - RXN-5463
REACTION-LIST - 2.4.1.142-RXN
REACTION-LIST - 2.4.1.141-RXN
REACTION-LIST - 2.7.8.15-RXN
SYNONYMS - mannosyl-chito-dolichol biosynthesis
//
UNIQUE-ID - PWY-5111
TYPES - CMP-KDO-Biosynthesis
TYPES - SUGAR-NUCLEOTIDES
COMMON-NAME - CMP-KDO biosynthesis II (from D-arabinose 5-phosphate)
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |tissier|
PREDECESSORS - (KDO-8PSYNTH-RXN)
PREDECESSORS - (KDO-8PPHOSPHAT-RXN KDO-8PSYNTH-RXN)
PREDECESSORS - (CPM-KDOSYNTH-RXN KDO-8PPHOSPHAT-RXN)
PRIMARIES - (KDO-8PSYNTH-RXN (ARABINOSE-5P) (KDO-8P))
PRIMARIES - (CPM-KDOSYNTH-RXN (KDO) (CMP-KDO))
PRIMARIES - (KDO-8PPHOSPHAT-RXN (KDO-8P) (KDO))
REACTION-LAYOUT - (CPM-KDOSYNTH-RXN (:LEFT-PRIMARIES KDO) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CMP-KDO))
REACTION-LAYOUT - (KDO-8PPHOSPHAT-RXN (:LEFT-PRIMARIES KDO-8P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES KDO))
REACTION-LAYOUT - (KDO-8PSYNTH-RXN (:LEFT-PRIMARIES ARABINOSE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES KDO-8P))
REACTION-LIST - CPM-KDOSYNTH-RXN
REACTION-LIST - KDO-8PPHOSPHAT-RXN
REACTION-LIST - KDO-8PSYNTH-RXN
SYNONYMS - CMP-3-deoxy-D-manno-octulosonate biosynthesis
//
UNIQUE-ID - PWY-1269
TYPES - CMP-KDO-Biosynthesis
TYPES - SUGAR-NUCLEOTIDES
COMMON-NAME - CMP-KDO biosynthesis I
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |caspi|
PREDECESSORS - (KDO-8PSYNTH-RXN DARAB5PISOM-RXN)
PREDECESSORS - (KDO-8PPHOSPHAT-RXN KDO-8PSYNTH-RXN)
PREDECESSORS - (CPM-KDOSYNTH-RXN KDO-8PPHOSPHAT-RXN)
PRIMARIES - (KDOTRANS2-RXN (KDO-LIPID-IVA) (KDO2-LIPID-IVA))
REACTION-LAYOUT - (DARAB5PISOM-RXN (:LEFT-PRIMARIES ARABINOSE-5P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES RIBULOSE-5P))
REACTION-LAYOUT - (KDO-8PSYNTH-RXN (:LEFT-PRIMARIES ARABINOSE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES KDO-8P))
REACTION-LAYOUT - (KDO-8PPHOSPHAT-RXN (:LEFT-PRIMARIES KDO-8P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES KDO))
REACTION-LAYOUT - (CPM-KDOSYNTH-RXN (:LEFT-PRIMARIES KDO) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CMP-KDO))
REACTION-LIST - DARAB5PISOM-RXN
REACTION-LIST - KDO-8PSYNTH-RXN
REACTION-LIST - KDO-8PPHOSPHAT-RXN
REACTION-LIST - CPM-KDOSYNTH-RXN
SYNONYMS - 3-deoxy-D-manno-octulosonate biosynthesis
//
UNIQUE-ID - PWY-622
TYPES - GLYCOGEN-BIOSYN
COMMON-NAME - starch biosynthesis
CITATIONS - :EV-COMP-AINF:3497824357:liya
PATHWAY-LINKS - (FRUCTOSE-6P CALVIN-PWY)
PATHWAY-LINKS - (GLC-6-P PWY-621)
PATHWAY-LINKS - (GLC-1-P PWY-621)
PATHWAY-LINKS - (G3P CALVIN-PWY)
POLYMERIZATION-LINKS - (|1-4-alpha-D-Glucan| GLYCOGENSYN-RXN GLYCOGENSYN-RXN)
PREDECESSORS - (GLUC1PADENYLTRANS-RXN PHOSPHOGLUCMUT-RXN)
PREDECESSORS - (GLYCOGENSYN-RXN GLUC1PADENYLTRANS-RXN)
PREDECESSORS - (PHOSPHOGLUCMUT-RXN GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN)
PREDECESSORS - (GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN PGLUCISOM-RXN)
PREDECESSORS - (RXN-7710 GLYCOGENSYN-RXN)
PRIMARIES - (GLYCOGENSYN-RXN (|1-4-alpha-D-Glucan|) (|1-4-alpha-D-Glucan|))
REACTION-LAYOUT - (RXN-7710 (:LEFT-PRIMARIES |1-4-alpha-D-Glucan|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Starch|))
REACTION-LAYOUT - (GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN (:LEFT-PRIMARIES ALPHA-GLC-6-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GLC-6-P))
REACTION-LAYOUT - (GLYCOGENSYN-RXN (:LEFT-PRIMARIES |1-4-alpha-D-Glucan| ADP-D-GLUCOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |1-4-alpha-D-Glucan|))
REACTION-LAYOUT - (GLUC1PADENYLTRANS-RXN (:LEFT-PRIMARIES GLC-1-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ADP-D-GLUCOSE))
REACTION-LAYOUT - (PHOSPHOGLUCMUT-RXN (:LEFT-PRIMARIES GLC-1-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES ALPHA-GLC-6-P))
REACTION-LAYOUT - (PGLUCISOM-RXN (:LEFT-PRIMARIES GLC-6-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES FRUCTOSE-6P))
REACTION-LIST - RXN-7710
REACTION-LIST - GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN
REACTION-LIST - GLYCOGENSYN-RXN
REACTION-LIST - GLUC1PADENYLTRANS-RXN
REACTION-LIST - PHOSPHOGLUCMUT-RXN
REACTION-LIST - PGLUCISOM-RXN
//
UNIQUE-ID - PWY-822
TYPES - CARBO-BIOSYNTHESIS
COMMON-NAME - fructan biosynthesis
CITATIONS - :EV-COMP-AINF:3497824358:liya
PREDECESSORS - (RXN-1801 RXN-1781)
PREDECESSORS - (RXN-1802 RXN-1781)
PRIMARIES - (RXN-1804 (1-KESTOTRIOSE SUCROSE) (BIFURCOSE))
PRIMARIES - (RXN-1803 (SUCROSE) (6-KESTOSE))
PRIMARIES - (RXN-1802 (1-KESTOTRIOSE) (6G-KESTOTETRAOSE))
PRIMARIES - (RXN-1781 (SUCROSE) (1-KESTOTRIOSE))
PRIMARIES - (RXN-1801 (1-KESTOTRIOSE) (NYSTOSE))
REACTION-LAYOUT - (RXN-1803 (:LEFT-PRIMARIES SUCROSE SUCROSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 6-KESTOSE))
REACTION-LAYOUT - (RXN-1804 (:LEFT-PRIMARIES SUCROSE 1-KESTOTRIOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES BIFURCOSE))
REACTION-LAYOUT - (RXN-1802 (:LEFT-PRIMARIES SUCROSE 1-KESTOTRIOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SUCROSE 6G-KESTOTETRAOSE))
REACTION-LAYOUT - (RXN-1801 (:LEFT-PRIMARIES 1-KESTOTRIOSE 1-KESTOTRIOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SUCROSE NYSTOSE))
REACTION-LAYOUT - (RXN-1781 (:LEFT-PRIMARIES SUCROSE SUCROSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 1-KESTOTRIOSE))
REACTION-LIST - RXN-1803
REACTION-LIST - RXN-1804
REACTION-LIST - RXN-1802
REACTION-LIST - RXN-1801
REACTION-LIST - RXN-1781
//
UNIQUE-ID - SUCSYN-PWY
TYPES - CARBO-BIOSYNTHESIS
COMMON-NAME - sucrose biosynthesis
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - SRI
CREDITS - |Iourovitski|
PREDECESSORS - (PHOSPHOGLUCMUT-RXN GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN)
PREDECESSORS - (SUCROSE-PHOSPHATASE-RXN SUCROSE-PHOSPHATE-SYNTHASE-RXN)
PREDECESSORS - (SUCROSE-PHOSPHATE-SYNTHASE-RXN GLUC1PURIDYLTRANS-RXN)
PREDECESSORS - (GLUC1PURIDYLTRANS-RXN PHOSPHOGLUCMUT-RXN)
REACTION-LAYOUT - (GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN (:LEFT-PRIMARIES ALPHA-GLC-6-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GLC-6-P))
REACTION-LAYOUT - (SUCROSE-PHOSPHATASE-RXN (:LEFT-PRIMARIES SUCROSE-6P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SUCROSE))
REACTION-LAYOUT - (SUCROSE-PHOSPHATE-SYNTHASE-RXN (:LEFT-PRIMARIES UDP-GLUCOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SUCROSE-6P))
REACTION-LAYOUT - (GLUC1PURIDYLTRANS-RXN (:LEFT-PRIMARIES GLC-1-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP-GLUCOSE))
REACTION-LAYOUT - (PHOSPHOGLUCMUT-RXN (:LEFT-PRIMARIES GLC-1-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES ALPHA-GLC-6-P))
REACTION-LIST - GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN
REACTION-LIST - SUCROSE-PHOSPHATASE-RXN
REACTION-LIST - SUCROSE-PHOSPHATE-SYNTHASE-RXN
REACTION-LIST - GLUC1PURIDYLTRANS-RXN
REACTION-LIST - PHOSPHOGLUCMUT-RXN
//
UNIQUE-ID - PWY-3881
TYPES - Sugar-Alcohols-Biosynthesis
COMMON-NAME - mannitol biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
PREDECESSORS - (MANNOSE-6-PHOSPHATE-6-REDUCTASE-RXN MANNPISOM-RXN)
PREDECESSORS - (MANNPISOM-RXN)
PREDECESSORS - (MANNITOL-1-PHOSPHATASE-RXN MANNOSE-6-PHOSPHATE-6-REDUCTASE-RXN)
PRIMARIES - (MANNPISOM-RXN (FRUCTOSE-6P) (MANNOSE-6P))
PRIMARIES - (MANNOSE-6-PHOSPHATE-6-REDUCTASE-RXN (MANNOSE-6P) (MANNITOL-1P))
PRIMARIES - (MANNITOL-1-PHOSPHATASE-RXN (MANNITOL-1P) (MANNITOL))
REACTION-LAYOUT - (MANNPISOM-RXN (:LEFT-PRIMARIES MANNOSE-6P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES FRUCTOSE-6P))
REACTION-LAYOUT - (MANNOSE-6-PHOSPHATE-6-REDUCTASE-RXN (:LEFT-PRIMARIES MANNITOL-1P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES MANNOSE-6P))
REACTION-LAYOUT - (MANNITOL-1-PHOSPHATASE-RXN (:LEFT-PRIMARIES MANNITOL-1P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MANNITOL))
REACTION-LIST - MANNPISOM-RXN
REACTION-LIST - MANNOSE-6-PHOSPHATE-6-REDUCTASE-RXN
REACTION-LIST - MANNITOL-1-PHOSPHATASE-RXN
//
UNIQUE-ID - GLUCONEO-PWY
TYPES - Gluconeogenesis
COMMON-NAME - gluconeogenesis I
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - O-18
CREDITS - |riley|
PREDECESSORS - (PEPCARBOX-RXN MALATE-DEH-RXN)
PREDECESSORS - (2PGADEHYDRAT-RXN PEPCARBOX-RXN)
PREDECESSORS - (PGLUCISOM-RXN F16BDEPHOS-RXN)
PREDECESSORS - (F16BDEPHOS-RXN F16ALDOLASE-RXN)
PREDECESSORS - (F16ALDOLASE-RXN GAPOXNPHOSPHN-RXN)
PREDECESSORS - (GAPOXNPHOSPHN-RXN PHOSGLYPHOS-RXN)
PREDECESSORS - (PHOSGLYPHOS-RXN 3PGAREARR-RXN)
PREDECESSORS - (3PGAREARR-RXN 2PGADEHYDRAT-RXN)
PREDECESSORS - (2PGADEHYDRAT-RXN PEPCARBOXYKIN-RXN)
PREDECESSORS - (PEPCARBOXYKIN-RXN MALATE-DEH-RXN)
PREDECESSORS - (2PGADEHYDRAT-RXN PEPSYNTH-RXN)
PREDECESSORS - (PEPSYNTH-RXN MALIC-NAD-RXN)
PREDECESSORS - (PEPSYNTH-RXN MALIC-NADP-RXN)
PREDECESSORS - (MALIC-NAD-RXN)
PREDECESSORS - (MALIC-NADP-RXN)
PRIMARIES - (F16ALDOLASE-RXN (DIHYDROXY-ACETONE-PHOSPHATE GAP) NIL)
REACTION-LAYOUT - (MALATE-DEH-RXN (:LEFT-PRIMARIES MAL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OXALACETIC_ACID))
REACTION-LAYOUT - (PEPCARBOX-RXN (:LEFT-PRIMARIES OXALACETIC_ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE))
REACTION-LAYOUT - (MALIC-NADP-RXN (:LEFT-PRIMARIES MAL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PYRUVATE))
REACTION-LAYOUT - (MALIC-NAD-RXN (:LEFT-PRIMARIES MAL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PYRUVATE))
REACTION-LAYOUT - (PEPSYNTH-RXN (:LEFT-PRIMARIES PYRUVATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE))
REACTION-LAYOUT - (PEPCARBOXYKIN-RXN (:LEFT-PRIMARIES OXALACETIC_ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE))
REACTION-LAYOUT - (2PGADEHYDRAT-RXN (:LEFT-PRIMARIES 2-PG) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE))
REACTION-LAYOUT - (3PGAREARR-RXN (:LEFT-PRIMARIES G3P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 2-PG))
REACTION-LAYOUT - (PHOSGLYPHOS-RXN (:LEFT-PRIMARIES G3P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DPG))
REACTION-LAYOUT - (GAPOXNPHOSPHN-RXN (:LEFT-PRIMARIES GAP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DPG))
REACTION-LAYOUT - (F16ALDOLASE-RXN (:LEFT-PRIMARIES FRUCTOSE-16-DIPHOSPHATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GAP DIHYDROXY-ACETONE-PHOSPHATE))
REACTION-LAYOUT - (F16BDEPHOS-RXN (:LEFT-PRIMARIES FRUCTOSE-16-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-6P))
REACTION-LAYOUT - (PGLUCISOM-RXN (:LEFT-PRIMARIES GLC-6-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES FRUCTOSE-6P))
REACTION-LIST - MALATE-DEH-RXN
REACTION-LIST - PEPCARBOX-RXN
REACTION-LIST - MALIC-NADP-RXN
REACTION-LIST - MALIC-NAD-RXN
REACTION-LIST - PEPSYNTH-RXN
REACTION-LIST - PEPCARBOXYKIN-RXN
REACTION-LIST - 2PGADEHYDRAT-RXN
REACTION-LIST - 3PGAREARR-RXN
REACTION-LIST - PHOSGLYPHOS-RXN
REACTION-LIST - GAPOXNPHOSPHN-RXN
REACTION-LIST - F16ALDOLASE-RXN
REACTION-LIST - F16BDEPHOS-RXN
REACTION-LIST - PGLUCISOM-RXN
//
UNIQUE-ID - PWY-5661
TYPES - SUGAR-NUCLEOTIDES
COMMON-NAME - GDP-glucose biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - SRI
CREDITS - |caspi|
PREDECESSORS - (2.7.7.34-RXN PHOSPHOGLUCMUT-RXN)
PREDECESSORS - (PHOSPHOGLUCMUT-RXN GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN)
PREDECESSORS - (GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN GLUCOKIN-RXN)
REACTION-LAYOUT - (GLUCOKIN-RXN (:LEFT-PRIMARIES GLC) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLC-6-P))
REACTION-LAYOUT - (2.7.7.34-RXN (:LEFT-PRIMARIES GLC-1-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GDP-D-GLUCOSE))
REACTION-LAYOUT - (PHOSPHOGLUCMUT-RXN (:LEFT-PRIMARIES GLC-1-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES ALPHA-GLC-6-P))
REACTION-LAYOUT - (GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN (:LEFT-PRIMARIES ALPHA-GLC-6-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GLC-6-P))
REACTION-LIST - GLUCOKIN-RXN
REACTION-LIST - 2.7.7.34-RXN
REACTION-LIST - PHOSPHOGLUCMUT-RXN
REACTION-LIST - GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN
//
UNIQUE-ID - PWY-82
TYPES - SUGAR-NUCLEOTIDES
COMMON-NAME - UDP-L-arabinose biosynthesis II (from L-arabinose)
CITATIONS - :EV-COMP-AINF:3497824357:liya
PREDECESSORS - (RXN-7401 L-ARABINOKINASE-RXN)
PREDECESSORS - (L-ARABINOKINASE-RXN)
PRIMARIES - (L-ARABINOKINASE-RXN (L-ARABINOSE) (CPD-1825))
PRIMARIES - (RXN-7401 (CPD-1825) (UDP-L-ARABINOSE))
PRIMARIES - (RXN-7381 (CPD-1825) (UDP-L-ARABINOSE))
REACTION-LAYOUT - (L-ARABINOKINASE-RXN (:LEFT-PRIMARIES L-ARABINOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-1825))
REACTION-LAYOUT - (RXN-7401 (:LEFT-PRIMARIES CPD-1825) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP-L-ARABINOSE))
REACTION-LIST - L-ARABINOKINASE-RXN
REACTION-LIST - RXN-7401
SYNONYMS - UDP-L-arabinose biosynthesis (salvage pathway)
//
UNIQUE-ID - PWY-63
TYPES - SUGAR-NUCLEOTIDES
COMMON-NAME - UDP-L-arabinose biosynthesis I (from UDP-xylose)
CITATIONS - :EV-COMP-AINF:3497824358:liya
PATHWAY-LINKS - (UDP-D-XYLOSE PWY-4821)
PREDECESSORS - (UDP-ARABINOSE-4-EPIMERASE-RXN)
PRIMARIES - (UDP-ARABINOSE-4-EPIMERASE-RXN (UDP-D-XYLOSE) (UDP-L-ARABINOSE))
REACTION-LAYOUT - (UDP-ARABINOSE-4-EPIMERASE-RXN (:LEFT-PRIMARIES UDP-L-ARABINOSE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES UDP-D-XYLOSE))
REACTION-LIST - UDP-ARABINOSE-4-EPIMERASE-RXN
SYNONYMS - UDP-L-arabinose biosynthesis (de novo synthesis)
//
UNIQUE-ID - PWY-4861
TYPES - SUGAR-NUCLEOTIDES
COMMON-NAME - UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate)
CITATIONS - :EV-COMP-AINF:3497824358:liya
PRIMARIES - (UDP-GLUCURONATE-4-EPIMERASE-RXN (UDP-GLUCURONATE) (UDP-D-GALACTURONATE))
REACTION-LAYOUT - (UDP-GLUCURONATE-4-EPIMERASE-RXN (:LEFT-PRIMARIES UDP-GLUCURONATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP-D-GALACTURONATE))
REACTION-LIST - UDP-GLUCURONATE-4-EPIMERASE-RXN
SYNONYMS - UDP-galacturonic acid biosynthesis
SYNONYMS - UDP-GalA biosynthesis
//
UNIQUE-ID - PWY-66
TYPES - SUGAR-NUCLEOTIDES
COMMON-NAME - GDP-L-fucose biosynthesis I (from GDP-D-mannose)
CITATIONS - :EV-COMP-AINF:3497824357:liya
KEY-REACTIONS - 1.1.1.271-RXN
PATHWAY-LINKS - (GDP-MANNOSE (PWY-5659 . :INCOMING))
PREDECESSORS - (1.1.1.271-RXN GDPMANDEHYDRA-RXN)
PREDECESSORS - (GDPMANDEHYDRA-RXN)
PRIMARIES - (1.1.1.271-RXN (GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE) (GUANOSINE_DIPHOSPHATE_FUCOSE))
PRIMARIES - (GDPMANDEHYDRA-RXN (GDP-MANNOSE) (GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE))
REACTION-LAYOUT - (1.1.1.271-RXN (:LEFT-PRIMARIES GUANOSINE_DIPHOSPHATE_FUCOSE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE))
REACTION-LAYOUT - (GDPMANDEHYDRA-RXN (:LEFT-PRIMARIES GDP-MANNOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE))
REACTION-LIST - 1.1.1.271-RXN
REACTION-LIST - GDPMANDEHYDRA-RXN
SYNONYMS - GDP-L-fucose biosynthesis I (de novo synthesis)
//
UNIQUE-ID - PWY-4821
TYPES - SUGAR-NUCLEOTIDES
COMMON-NAME - UDP-D-xylose biosynthesis
CITATIONS - :EV-COMP-AINF:3497824358:liya
PATHWAY-LINKS - (UDP-GLUCURONATE PWY-4841)
PREDECESSORS - (UDP-GLUCURONATE-DECARBOXYLASE-RXN UGD-RXN)
PREDECESSORS - (UGD-RXN)
PRIMARIES - (UDP-GLUCURONATE-DECARBOXYLASE-RXN (UDP-GLUCURONATE) (UDP-D-XYLOSE))
PRIMARIES - (UGD-RXN (UDP-GLUCOSE) (UDP-GLUCURONATE))
REACTION-LAYOUT - (UDP-GLUCURONATE-DECARBOXYLASE-RXN (:LEFT-PRIMARIES UDP-GLUCURONATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP-D-XYLOSE))
REACTION-LAYOUT - (UGD-RXN (:LEFT-PRIMARIES UDP-GLUCOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP-GLUCURONATE))
REACTION-LIST - UDP-GLUCURONATE-DECARBOXYLASE-RXN
REACTION-LIST - UGD-RXN
SYNONYMS - UDP-xylose biosynthesis
SYNONYMS - UDPXyl biosynthesis
SYNONYMS - UDP-glucuronate biosynthesis (from UDP-glucose)
SYNONYMS - UDP-glucuronic acid biosynthesis (from UDP-glucose)
SYNONYMS - UDPGlcA biosynthesis
//
UNIQUE-ID - PWY-5659
TYPES - GDP-Mannose-Biosynthesis
COMMON-NAME - GDP-mannose biosynthesis
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (GDP-MANNOSE PWY-66)
PREDECESSORS - (2.7.7.13-RXN PHOSMANMUT-RXN)
PREDECESSORS - (PHOSMANMUT-RXN MANNPISOM-RXN)
PREDECESSORS - (MANNPISOM-RXN PGLUCISOM-RXN)
REACTION-LAYOUT - (2.7.7.13-RXN (:LEFT-PRIMARIES MANNOSE-1P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GDP-MANNOSE))
REACTION-LAYOUT - (PHOSMANMUT-RXN (:LEFT-PRIMARIES MANNOSE-1P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES MANNOSE-6P))
REACTION-LAYOUT - (MANNPISOM-RXN (:LEFT-PRIMARIES MANNOSE-6P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES FRUCTOSE-6P))
REACTION-LAYOUT - (PGLUCISOM-RXN (:LEFT-PRIMARIES GLC-6-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-6P))
REACTION-LIST - 2.7.7.13-RXN
REACTION-LIST - PHOSMANMUT-RXN
REACTION-LIST - MANNPISOM-RXN
REACTION-LIST - PGLUCISOM-RXN
//
UNIQUE-ID - PWY-5143
TYPES - Activation
TYPES - Lipid-Biosynthesis
COMMON-NAME - fatty acid activation
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - SRI
CREDITS - |caspi|
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |zhang|
PATHWAY-LINKS - (|Fatty-Acyl-CoA| TRIGLSYN-PWY PWY-5129 PWY-5080)
PATHWAY-LINKS - (|Fatty-Acids| LIPAS-PWY PWY-5142)
PREDECESSORS - (RXN-7904)
PRIMARIES - (RXN-7904 (|Fatty-Acids|) (|Fatty-Acyl-CoA|))
REACTION-LAYOUT - (RXN-7904 (:LEFT-PRIMARIES |Fatty-Acids|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Fatty-Acyl-CoA|))
REACTION-LIST - RXN-7904
SYNONYMS - acyl-CoA synthetase pathway
//
UNIQUE-ID - PWY0-1264
TYPES - Lipid-Biosynthesis
COMMON-NAME - biotin-carboxyl carrier protein
CITATIONS - :EV-COMP-AINF:3497824359:liya
CREDITS - SRI
CREDITS - |caspi|
PREDECESSORS - (RXN0-5055 BIOTIN-CARBOXYL-RXN)
PREDECESSORS - (BIOTIN-CARBOXYL-RXN RXN-7101)
PREDECESSORS - (RXN-7101 BIOTINLIG-RXN)
PREDECESSORS - (BIOTIN-CARBOXYL-RXN RXN0-5055)
PRIMARIES - (RXN0-5055 NIL (|BCCP-dimers|))
PRIMARIES - (BIOTINLIG-RXN (|BCCP-monomers|) NIL)
REACTION-LAYOUT - (RXN0-5055 (:LEFT-PRIMARIES |Carboxybiotin-BCCP|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |BCCP-dimers|))
REACTION-LAYOUT - (BIOTIN-CARBOXYL-RXN (:LEFT-PRIMARIES |BCCP-dimers|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Carboxybiotin-BCCP|))
REACTION-LAYOUT - (RXN-7101 (:LEFT-PRIMARIES |BCCP-biotin-monomers|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |BCCP-dimers|))
REACTION-LAYOUT - (BIOTINLIG-RXN (:LEFT-PRIMARIES |BCCP-monomers|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |BCCP-biotin-monomers|))
REACTION-LIST - RXN0-5055
REACTION-LIST - BIOTIN-CARBOXYL-RXN
REACTION-LIST - RXN-7101
REACTION-LIST - BIOTINLIG-RXN
SYNONYMS - BCCP
//
UNIQUE-ID - PWY-401
TYPES - Lipid-Biosynthesis
COMMON-NAME - glycolipid biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - |zhang|
PREDECESSORS - (RXN-9721 2.4.1.46-RXN)
PREDECESSORS - (RXN-1226 2.4.1.46-RXN)
PREDECESSORS - (RXN-1225 2.4.1.46-RXN)
PRIMARIES - (RXN-9721 (|D-Galactosyl-12-diacyl-glycerols|) (CPD-10364))
PRIMARIES - (RXN-1226 (|D-Galactosyl-12-diacyl-glycerols|) (CPD-10363))
PRIMARIES - (RXN-1224 NIL (SULFOQUINOVOSYLDIACYLGLYCEROL))
PRIMARIES - (RXN-1223 (UDP-GLUCOSE) NIL)
PRIMARIES - (RXN-1225 (|D-Galactosyl-12-diacyl-glycerols|) (|Galactosyl-galactosyl-diacyl-glycerols|))
PRIMARIES - (2.4.1.46-RXN (DIACYLGLYCEROL) (|D-Galactosyl-12-diacyl-glycerols|))
REACTION-LAYOUT - (RXN-9721 (:LEFT-PRIMARIES CPD-10363 |D-Galactosyl-12-diacyl-glycerols|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIACYLGLYCEROL CPD-10364))
REACTION-LAYOUT - (RXN-1226 (:LEFT-PRIMARIES |D-Galactosyl-12-diacyl-glycerols|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIACYLGLYCEROL CPD-10363))
REACTION-LAYOUT - (RXN-1225 (:LEFT-PRIMARIES |D-Galactosyl-12-diacyl-glycerols|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Galactosyl-galactosyl-diacyl-glycerols|))
REACTION-LAYOUT - (2.4.1.46-RXN (:LEFT-PRIMARIES DIACYLGLYCEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |D-Galactosyl-12-diacyl-glycerols|))
REACTION-LIST - RXN-9721
REACTION-LIST - RXN-1226
REACTION-LIST - RXN-1225
REACTION-LIST - 2.4.1.46-RXN
SYNONYMS - glycosylglyceride biosynthesis
//
UNIQUE-ID - PWY-5885
TYPES - Lipid-Biosynthesis
COMMON-NAME - wax esters biosynthesis II
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - O-27
CREDITS - |pujar|
PATHWAY-LINKS - (|Triacylglycerols| TRIGLSYN-PWY)
PREDECESSORS - (RXN-9356 DIACYLGLYCEROL-O-ACYLTRANSFERASE-RXN)
PRIMARIES - (RXN-9356 (CPD-9965) (CPD-9966))
PRIMARIES - (DIACYLGLYCEROL-O-ACYLTRANSFERASE-RXN (DIACYLGLYCEROL) (|Triacylglycerols|))
PRIMARIES - (2.3.1.75-RXN (ACYL-COA) (CO-A))
REACTION-LAYOUT - (RXN-9356 (:LEFT-PRIMARIES CPD-9965) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9966))
REACTION-LAYOUT - (DIACYLGLYCEROL-O-ACYLTRANSFERASE-RXN (:LEFT-PRIMARIES DIACYLGLYCEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Triacylglycerols|))
REACTION-LIST - RXN-9356
REACTION-LIST - DIACYLGLYCEROL-O-ACYLTRANSFERASE-RXN
SYNONYMS - WS/DGAT biosynthesis
SYNONYMS - petunia wax biosynthesis
//
UNIQUE-ID - PWY-5148
TYPES - Lipid-Biosynthesis
COMMON-NAME - acyl-CoA hydrolysis
CITATIONS - :EV-COMP-AINF:3497824358:liya
PREDECESSORS - (THIOESTER-RXN)
PRIMARIES - (THIOESTER-RXN (|Saturated-Fatty-Acyl-CoA|) (|Fatty-Acids|))
REACTION-LAYOUT - (THIOESTER-RXN (:LEFT-PRIMARIES |Saturated-Fatty-Acyl-CoA|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Fatty-Acids|))
REACTION-LIST - THIOESTER-RXN
SYNONYMS - acyl-CoA thioesterase pathway
//
UNIQUE-ID - PWY-5142
TYPES - Lipid-Biosynthesis
COMMON-NAME - acyl-ACP thioesterase pathway
CITATIONS - :EV-COMP-AINF:3497824359:liya
PATHWAY-LINKS - (|Fatty-Acids| PWY-5143)
PREDECESSORS - (RXN-7902)
PRIMARIES - (RXN-7902 (ACYL-ACP) (|Fatty-Acids|))
REACTION-LAYOUT - (RXN-7902 (:LEFT-PRIMARIES ACYL-ACP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Fatty-Acids|))
REACTION-LIST - RXN-7902
//
UNIQUE-ID - TRIGLSYN-PWY
TYPES - Lipid-Biosynthesis
COMMON-NAME - triacylglycerol biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
PREDECESSORS - (RXN-1623 RXN-1381)
PREDECESSORS - (PHOSPHATIDATE-PHOSPHATASE-RXN RXN-1623)
PREDECESSORS - (DIACYLGLYCEROL-O-ACYLTRANSFERASE-RXN PHOSPHOLIPASE-C-RXN)
PREDECESSORS - (PHOSPHOLIPASE-C-RXN)
PREDECESSORS - (DIACYLGLYCEROL-O-ACYLTRANSFERASE-RXN PHOSPHATIDATE-PHOSPHATASE-RXN)
PREDECESSORS - (RXN-1641 PHOSPHATIDATE-PHOSPHATASE-RXN)
PRIMARIES - (RXN-1641 (DIACYLGLYCEROL) (|Triacylglycerols|))
PRIMARIES - (RXN-1381 (GLYCEROL-3P) (ACYL-SN-GLYCEROL-3P))
PRIMARIES - (DIACYLGLYCEROL-O-ACYLTRANSFERASE-RXN (DIACYLGLYCEROL) (|Triacylglycerols|))
PRIMARIES - (RXN-10462 NIL (ACYL-SN-GLYCEROL-3P))
REACTION-LAYOUT - (RXN-1641 (:LEFT-PRIMARIES DIACYLGLYCEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Triacylglycerols|))
REACTION-LAYOUT - (RXN-1623 (:LEFT-PRIMARIES ACYL-SN-GLYCEROL-3P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-PHOSPHATIDATE))
REACTION-LAYOUT - (RXN-1381 (:LEFT-PRIMARIES GLYCEROL-3P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ACYL-SN-GLYCEROL-3P))
REACTION-LAYOUT - (DIACYLGLYCEROL-O-ACYLTRANSFERASE-RXN (:LEFT-PRIMARIES DIACYLGLYCEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Triacylglycerols|))
REACTION-LAYOUT - (PHOSPHATIDATE-PHOSPHATASE-RXN (:LEFT-PRIMARIES L-PHOSPHATIDATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIACYLGLYCEROL))
REACTION-LIST - RXN-1641
REACTION-LIST - RXN-1623
REACTION-LIST - RXN-1381
REACTION-LIST - DIACYLGLYCEROL-O-ACYLTRANSFERASE-RXN
REACTION-LIST - PHOSPHATIDATE-PHOSPHATASE-RXN
SYNONYMS - triglyceride biosynthesis
SYNONYMS - Kennedy pathway
SYNONYMS - TAG biosynthesis
//
UNIQUE-ID - PWY-5129
TYPES - Lipid-Biosynthesis
COMMON-NAME - sphingolipid biosynthesis (plants)
CITATIONS - :EV-COMP-AINF:3497824356:liya
PREDECESSORS - (SPHINGANINE-KINASE-RXN 3-DEHYDROSPHINGANINE-REDUCTASE-RXN)
PREDECESSORS - (RXN-7801 RXN-7792)
PREDECESSORS - (RXN-7799 RXN-7792)
PREDECESSORS - (RXN-7798 RXN-7797)
PREDECESSORS - (RXN-7795 RXN-7792)
PREDECESSORS - (RXN-7793 RXN-7792)
PREDECESSORS - (RXN-7792 3-DEHYDROSPHINGANINE-REDUCTASE-RXN)
PREDECESSORS - (RXN3O-1380 3-DEHYDROSPHINGANINE-REDUCTASE-RXN)
PREDECESSORS - (3-DEHYDROSPHINGANINE-REDUCTASE-RXN SERINE-C-PALMITOYLTRANSFERASE-RXN)
PREDECESSORS - (RXN-7797 RXN-7792)
PREDECESSORS - (RXN-7796 RXN-7792)
PRIMARIES - (RXN-7801 (|Plant-Ceramides-I|) (|Glucosyl-Ceramides|))
PRIMARIES - (RXN-7799 (|Plant-Ceramides-I|) (|Plant-Ceramide-Phosphate|))
PRIMARIES - (RXN-7797 (|Plant-Ceramides-I|) (|Plant-Ceramides-III|))
PRIMARIES - (RXN-7795 (|Plant-Ceramides-I|) (|Inositolphosphoryl-Ceramides|))
PRIMARIES - (RXN-7793 (|Plant-Ceramides-I|) (|Glucosyl-Ceramides|))
PRIMARIES - (RXN-7792 (DIHYDRO-SPHINGOSINE) (|Plant-Ceramides-I|))
PRIMARIES - (RXN3O-1380 (DIHYDRO-SPHINGOSINE) (PHYTOSPINGOSINE))
PRIMARIES - (SERINE-C-PALMITOYLTRANSFERASE-RXN (PALMITYL-COA SER) (DEHYDROSPHINGANINE))
PRIMARIES - (3-DEHYDROSPHINGANINE-REDUCTASE-RXN (DEHYDROSPHINGANINE) (DIHYDRO-SPHINGOSINE))
PRIMARIES - (DHS-PHOSPHATASE-RXN (DIHYDRO-SPHINGOSINE) (CPD-649))
REACTION-LAYOUT - (SPHINGANINE-KINASE-RXN (:LEFT-PRIMARIES DIHYDRO-SPHINGOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-649))
REACTION-LAYOUT - (RXN-7801 (:LEFT-PRIMARIES |Plant-Ceramides-I|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Glucosyl-Ceramides|))
REACTION-LAYOUT - (RXN-7799 (:LEFT-PRIMARIES |Plant-Ceramides-I|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Plant-Ceramide-Phosphate|))
REACTION-LAYOUT - (RXN-7798 (:LEFT-PRIMARIES |Plant-Ceramides-III|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Plant-Ceramides-IV|))
REACTION-LAYOUT - (RXN-7797 (:LEFT-PRIMARIES |Plant-Ceramides-I|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Plant-Ceramides-III|))
REACTION-LAYOUT - (RXN-7796 (:LEFT-PRIMARIES |Plant-Ceramides-I|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Plant-Ceramides-II|))
REACTION-LAYOUT - (RXN-7795 (:LEFT-PRIMARIES |Plant-Ceramides-I|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Inositolphosphoryl-Ceramides|))
REACTION-LAYOUT - (RXN-7793 (:LEFT-PRIMARIES |Plant-Ceramides-I|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Glucosyl-Ceramides|))
REACTION-LAYOUT - (RXN-7792 (:LEFT-PRIMARIES DIHYDRO-SPHINGOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Plant-Ceramides-I|))
REACTION-LAYOUT - (RXN3O-1380 (:LEFT-PRIMARIES DIHYDRO-SPHINGOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHYTOSPINGOSINE))
REACTION-LAYOUT - (SERINE-C-PALMITOYLTRANSFERASE-RXN (:LEFT-PRIMARIES PALMITYL-COA SER) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DEHYDROSPHINGANINE))
REACTION-LAYOUT - (3-DEHYDROSPHINGANINE-REDUCTASE-RXN (:LEFT-PRIMARIES DIHYDRO-SPHINGOSINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DEHYDROSPHINGANINE))
REACTION-LIST - SPHINGANINE-KINASE-RXN
REACTION-LIST - RXN-7801
REACTION-LIST - RXN-7799
REACTION-LIST - RXN-7798
REACTION-LIST - RXN-7797
REACTION-LIST - RXN-7796
REACTION-LIST - RXN-7795
REACTION-LIST - RXN-7793
REACTION-LIST - RXN-7792
REACTION-LIST - RXN3O-1380
REACTION-LIST - SERINE-C-PALMITOYLTRANSFERASE-RXN
REACTION-LIST - 3-DEHYDROSPHINGANINE-REDUCTASE-RXN
//
UNIQUE-ID - PWY3O-450
TYPES - PhosphatidylcholineBiosynthesis
COMMON-NAME - phosphatidylcholine biosynthesis I
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - O-16
CREDITS - |hong|
IN-PATHWAY - PWY4FS-5
PREDECESSORS - (RXN-5781 2.7.7.15-RXN)
PREDECESSORS - (2.7.7.15-RXN CHOLINE-KINASE-RXN)
PRIMARIES - (RXN-5781 NIL (PHOSPHATIDYLCHOLINE))
REACTION-LAYOUT - (RXN-5781 (:LEFT-PRIMARIES CDP-CHOLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHATIDYLCHOLINE))
REACTION-LAYOUT - (2.7.7.15-RXN (:LEFT-PRIMARIES PHOSPHORYL-CHOLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CDP-CHOLINE))
REACTION-LAYOUT - (CHOLINE-KINASE-RXN (:LEFT-PRIMARIES CHOLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHORYL-CHOLINE))
REACTION-LIST - RXN-5781
REACTION-LIST - 2.7.7.15-RXN
REACTION-LIST - CHOLINE-KINASE-RXN
SUPER-PATHWAYS - PWY4FS-5
//
UNIQUE-ID - PWY4FS-3
TYPES - PhosphatidylcholineBiosynthesis
COMMON-NAME - phosphatidylcholine biosynthesis III
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |zhang|
IN-PATHWAY - PWY4FS-5
PREDECESSORS - (RXN4FS-2 2.1.1.71-RXN)
PREDECESSORS - (2.1.1.71-RXN RXN4FS-1)
PREDECESSORS - (RXN4FS-1 2.7.7.57-RXN)
PREDECESSORS - (2.7.7.57-RXN 2.1.1.103-RXN)
PRIMARIES - (RXN4FS-2 (CPD-160) (PHOSPHATIDYLCHOLINE))
PRIMARIES - (2.1.1.71-RXN (CPD-405) (CPD-160))
PRIMARIES - (RXN4FS-1 (CDP-N-METHYLETHANOLAMIN) (CPD-405))
PRIMARIES - (2.7.7.57-RXN (CPD-406) (CDP-N-METHYLETHANOLAMIN))
PRIMARIES - (2.1.1.103-RXN (PHOSPHORYL-ETHANOLAMINE) (CPD-406))
REACTION-LAYOUT - (RXN4FS-2 (:LEFT-PRIMARIES CPD-160) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHATIDYLCHOLINE))
REACTION-LAYOUT - (RXN4FS-1 (:LEFT-PRIMARIES CDP-N-METHYLETHANOLAMIN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-405))
REACTION-LAYOUT - (2.1.1.71-RXN (:LEFT-PRIMARIES CPD-405) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-160))
REACTION-LAYOUT - (2.7.7.57-RXN (:LEFT-PRIMARIES CPD-406) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CDP-N-METHYLETHANOLAMIN))
REACTION-LAYOUT - (2.1.1.103-RXN (:LEFT-PRIMARIES PHOSPHORYL-ETHANOLAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-406))
REACTION-LIST - RXN4FS-2
REACTION-LIST - RXN4FS-1
REACTION-LIST - 2.1.1.71-RXN
REACTION-LIST - 2.7.7.57-RXN
REACTION-LIST - 2.1.1.103-RXN
SUPER-PATHWAYS - PWY4FS-5
//
UNIQUE-ID - PWY4FS-2
TYPES - PhosphatidylcholineBiosynthesis
COMMON-NAME - phosphatidylcholine biosynthesis II
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |zhang|
IN-PATHWAY - PWY4FS-5
PREDECESSORS - (RXN-5781 2.7.7.15-RXN)
PREDECESSORS - (2.7.7.15-RXN RXN-5643)
PREDECESSORS - (RXN-5643 RXN-5642)
PREDECESSORS - (RXN-5642 2.1.1.103-RXN)
PRIMARIES - (RXN-5781 (CDP-CHOLINE) (PHOSPHATIDYLCHOLINE))
PRIMARIES - (RXN-5643 (CPD-5441) (PHOSPHORYL-CHOLINE))
PRIMARIES - (RXN-5642 (CPD-406) (CPD-5441))
PRIMARIES - (2.7.7.15-RXN (PHOSPHORYL-CHOLINE) (CDP-CHOLINE))
PRIMARIES - (2.1.1.103-RXN (PHOSPHORYL-ETHANOLAMINE) (CPD-406))
REACTION-LAYOUT - (RXN-5781 (:LEFT-PRIMARIES CDP-CHOLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHATIDYLCHOLINE))
REACTION-LAYOUT - (2.7.7.15-RXN (:LEFT-PRIMARIES PHOSPHORYL-CHOLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CDP-CHOLINE))
REACTION-LAYOUT - (RXN-5642 (:LEFT-PRIMARIES CPD-406) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-5441))
REACTION-LAYOUT - (RXN-5643 (:LEFT-PRIMARIES CPD-5441) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHORYL-CHOLINE))
REACTION-LAYOUT - (2.1.1.103-RXN (:LEFT-PRIMARIES PHOSPHORYL-ETHANOLAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-406))
REACTION-LIST - RXN-5781
REACTION-LIST - 2.7.7.15-RXN
REACTION-LIST - RXN-5642
REACTION-LIST - RXN-5643
REACTION-LIST - 2.1.1.103-RXN
SUPER-PATHWAYS - PWY4FS-5
//
UNIQUE-ID - PWY4FS-4
TYPES - PhosphatidylcholineBiosynthesis
COMMON-NAME - phosphatidylcholine biosynthesis IV
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |zhang|
IN-PATHWAY - PWY4FS-5
PREDECESSORS - (RXN4FS-3 RXN-5642)
PREDECESSORS - (RXN-5642 2.1.1.103-RXN)
PREDECESSORS - (RXN4FS-2 RXN4FS-4)
PREDECESSORS - (RXN4FS-4 RXN4FS-3)
PRIMARIES - (RXN-5642 (CPD-406) (CPD-5441))
PRIMARIES - (2.1.1.103-RXN (PHOSPHORYL-ETHANOLAMINE) (CPD-406))
PRIMARIES - (RXN4FS-2 (CPD-160) (PHOSPHATIDYLCHOLINE))
PRIMARIES - (RXN4FS-4 (CPD4FS-1) (CPD-160))
PRIMARIES - (RXN4FS-3 (CPD-5441) (CPD4FS-1))
REACTION-LAYOUT - (RXN-5642 (:LEFT-PRIMARIES CPD-406) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-5441))
REACTION-LAYOUT - (2.1.1.103-RXN (:LEFT-PRIMARIES PHOSPHORYL-ETHANOLAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-406))
REACTION-LAYOUT - (RXN4FS-2 (:LEFT-PRIMARIES CPD-160) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHATIDYLCHOLINE))
REACTION-LAYOUT - (RXN4FS-4 (:LEFT-PRIMARIES CPD4FS-1) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-160))
REACTION-LAYOUT - (RXN4FS-3 (:LEFT-PRIMARIES CPD-5441) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD4FS-1))
REACTION-LIST - RXN-5642
REACTION-LIST - 2.1.1.103-RXN
REACTION-LIST - RXN4FS-2
REACTION-LIST - RXN4FS-4
REACTION-LIST - RXN4FS-3
SUPER-PATHWAYS - PWY4FS-5
//
UNIQUE-ID - PWY-5269
TYPES - Cardiolipin-Biosynthesis
COMMON-NAME - cardiolipin biosynthesis II
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |caspi|
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |zhang|
PATHWAY-LINKS - (CDPDIACYLGLYCEROL PWY-5667)
PREDECESSORS - (RXN-8141 PGPPHOSPHA-RXN)
PREDECESSORS - (PGPPHOSPHA-RXN PHOSPHAGLYPSYN-RXN)
PRIMARIES - (PGPPHOSPHA-RXN (L-1-PHOSPHATIDYL-GLYCEROL-P) (L-1-PHOSPHATIDYL-GLYCEROL))
PRIMARIES - (PHOSPHAGLYPSYN-RXN (CDPDIACYLGLYCEROL) (L-1-PHOSPHATIDYL-GLYCEROL-P))
PRIMARIES - (RXN-8141 (L-1-PHOSPHATIDYL-GLYCEROL) (CARDIOLIPIN))
PRIMARIES - (CDPDIGLYSYN-RXN (L-PHOSPHATIDATE) (CDPDIACYLGLYCEROL))
REACTION-LAYOUT - (RXN-8141 (:LEFT-PRIMARIES L-1-PHOSPHATIDYL-GLYCEROL CDPDIACYLGLYCEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CARDIOLIPIN))
REACTION-LAYOUT - (PGPPHOSPHA-RXN (:LEFT-PRIMARIES L-1-PHOSPHATIDYL-GLYCEROL-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-1-PHOSPHATIDYL-GLYCEROL))
REACTION-LAYOUT - (PHOSPHAGLYPSYN-RXN (:LEFT-PRIMARIES CDPDIACYLGLYCEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-1-PHOSPHATIDYL-GLYCEROL-P))
REACTION-LIST - RXN-8141
REACTION-LIST - PGPPHOSPHA-RXN
REACTION-LIST - PHOSPHAGLYPSYN-RXN
//
UNIQUE-ID - PWY4FS-6
TYPES - PhosphatidylethanolamineBiosynthesis
COMMON-NAME - phosphatidylethanolamine biosynthesis II
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |zhang|
PREDECESSORS - (ETHANOLAMINEPHOSPHOTRANSFERASE-RXN 2.7.7.14-RXN)
PREDECESSORS - (2.7.7.14-RXN ETHANOLAMINE-KINASE-RXN)
PRIMARIES - (ETHANOLAMINEPHOSPHOTRANSFERASE-RXN (CDP-ETHANOLAMINE) (L-1-PHOSPHATIDYL-ETHANOLAMINE))
PRIMARIES - (2.7.7.14-RXN (PHOSPHORYL-ETHANOLAMINE) (CDP-ETHANOLAMINE))
PRIMARIES - (ETHANOLAMINE-KINASE-RXN (ETHANOL-AMINE) (PHOSPHORYL-ETHANOLAMINE))
REACTION-LAYOUT - (ETHANOLAMINEPHOSPHOTRANSFERASE-RXN (:LEFT-PRIMARIES CDP-ETHANOLAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-1-PHOSPHATIDYL-ETHANOLAMINE))
REACTION-LAYOUT - (2.7.7.14-RXN (:LEFT-PRIMARIES PHOSPHORYL-ETHANOLAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CDP-ETHANOLAMINE))
REACTION-LAYOUT - (ETHANOLAMINE-KINASE-RXN (:LEFT-PRIMARIES ETHANOL-AMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHORYL-ETHANOLAMINE))
REACTION-LIST - ETHANOLAMINEPHOSPHOTRANSFERASE-RXN
REACTION-LIST - 2.7.7.14-RXN
REACTION-LIST - ETHANOLAMINE-KINASE-RXN
//
UNIQUE-ID - PWY-5669
TYPES - PhosphatidylethanolamineBiosynthesis
COMMON-NAME - phosphatidylethanolamine biosynthesis I
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (CDPDIACYLGLYCEROL PWY-5667)
PATHWAY-LINKS - (DIHYDROXY-ACETONE-PHOSPHATE GLYCOLYSIS)
PREDECESSORS - (PHOSPHASERSYN-RXN)
PREDECESSORS - (PHOSPHASERDECARB-RXN PHOSPHASERSYN-RXN)
PRIMARIES - (PHOSPHASERSYN-RXN (CDPDIACYLGLYCEROL))
REACTION-LAYOUT - (PHOSPHASERDECARB-RXN (:LEFT-PRIMARIES L-1-PHOSPHATIDYL-SERINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-1-PHOSPHATIDYL-ETHANOLAMINE))
REACTION-LAYOUT - (PHOSPHASERSYN-RXN (:LEFT-PRIMARIES CDPDIACYLGLYCEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-1-PHOSPHATIDYL-SERINE))
REACTION-LIST - PHOSPHASERDECARB-RXN
REACTION-LIST - PHOSPHASERSYN-RXN
//
UNIQUE-ID - PWY-5667
TYPES - CDP-diacylglycerol-Biosynthesis
COMMON-NAME - CDP-diacylglycerol biosynthesis I
CREDITS - SRI
CREDITS - |caspi|
IN-PATHWAY - PWY4FS-8
PATHWAY-LINKS - (CDPDIACYLGLYCEROL PWY-5269 PWY-5669)
PATHWAY-LINKS - (DIHYDROXY-ACETONE-PHOSPHATE GLYCOLYSIS)
PREDECESSORS - (CDPDIGLYSYN-RXN RXN-1623)
PREDECESSORS - (RXN-1623 RXN-1381)
PREDECESSORS - (RXN-1381 GLYC3PDEHYDROGBIOSYN-RXN)
PREDECESSORS - (CDPDIGLYSYN-RXN)
PRIMARIES - (PHOSPHASERSYN-RXN (CDPDIACYLGLYCEROL) (L-1-PHOSPHATIDYL-SERINE))
REACTION-LAYOUT - (GLYC3PDEHYDROGBIOSYN-RXN (:LEFT-PRIMARIES GLYCEROL-3P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DIHYDROXY-ACETONE-PHOSPHATE))
REACTION-LAYOUT - (RXN-1381 (:LEFT-PRIMARIES GLYCEROL-3P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ACYL-SN-GLYCEROL-3P))
REACTION-LAYOUT - (RXN-1623 (:LEFT-PRIMARIES ACYL-SN-GLYCEROL-3P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-PHOSPHATIDATE))
REACTION-LAYOUT - (CDPDIGLYSYN-RXN (:LEFT-PRIMARIES L-PHOSPHATIDATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CDPDIACYLGLYCEROL))
REACTION-LIST - GLYC3PDEHYDROGBIOSYN-RXN
REACTION-LIST - RXN-1381
REACTION-LIST - RXN-1623
REACTION-LIST - CDPDIGLYSYN-RXN
SUPER-PATHWAYS - PWY4FS-8
SYNONYMS - CDP-diacylglycerol biosynthesis
//
UNIQUE-ID - PWY-6075
TYPES - Ergosterol-Biosynthesis
COMMON-NAME - ergosterol biosynthesis
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |caspi|
PREDECESSORS - (RXN3O-218 RXN3O-203)
PREDECESSORS - (RXN3O-203 RXN3O-178)
PREDECESSORS - (RXN3O-227 RXN3O-218)
PREDECESSORS - (1.3.1.71-RXN RXN3O-227)
REACTION-LAYOUT - (1.3.1.71-RXN (:LEFT-PRIMARIES ERGOSTEROL) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 57222428-ERGOSTATETRAENOL))
REACTION-LAYOUT - (RXN3O-227 (:LEFT-PRIMARIES 572428-ERGOSTATRIENOL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 57222428-ERGOSTATETRAENOL))
REACTION-LAYOUT - (RXN3O-218 (:LEFT-PRIMARIES EPISTEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 572428-ERGOSTATRIENOL))
REACTION-LAYOUT - (RXN3O-203 (:LEFT-PRIMARIES FECOSTEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES EPISTEROL))
REACTION-LAYOUT - (RXN3O-178 (:LEFT-PRIMARIES ZYMOSTEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FECOSTEROL))
REACTION-LIST - 1.3.1.71-RXN
REACTION-LIST - RXN3O-227
REACTION-LIST - RXN3O-218
REACTION-LIST - RXN3O-203
REACTION-LIST - RXN3O-178
//
UNIQUE-ID - PWY-3385
TYPES - Choline-Biosynthesis
COMMON-NAME - choline biosynthesis I
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |hartmut|
PATHWAY-LINKS - (PHOSPHORYL-CHOLINE PWY-3561)
PATHWAY-LINKS - (CHOLINE PWY1F-353)
PREDECESSORS - (RXN-5647 RXN-5643)
PREDECESSORS - (RXN-5643 RXN-5642)
PREDECESSORS - (RXN-5642 2.1.1.103-RXN)
PREDECESSORS - (2.1.1.103-RXN ETHANOLAMINE-KINASE-RXN)
PREDECESSORS - (ETHANOLAMINE-KINASE-RXN RXN-5641)
PRIMARIES - (RXN-5647 (PHOSPHORYL-CHOLINE) (CHOLINE))
PRIMARIES - (RXN-5643 (CPD-5441) (PHOSPHORYL-CHOLINE))
PRIMARIES - (RXN-5642 (CPD-406) (CPD-5441))
PRIMARIES - (2.1.1.103-RXN (PHOSPHORYL-ETHANOLAMINE) (CPD-406))
PRIMARIES - (ETHANOLAMINE-KINASE-RXN (ETHANOL-AMINE) (PHOSPHORYL-ETHANOLAMINE))
PRIMARIES - (RXN-5641 (SER) (ETHANOL-AMINE))
REACTION-LAYOUT - (RXN-5647 (:LEFT-PRIMARIES PHOSPHORYL-CHOLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CHOLINE))
REACTION-LAYOUT - (RXN-5643 (:LEFT-PRIMARIES CPD-5441) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHORYL-CHOLINE))
REACTION-LAYOUT - (RXN-5642 (:LEFT-PRIMARIES CPD-406) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-5441))
REACTION-LAYOUT - (2.1.1.103-RXN (:LEFT-PRIMARIES PHOSPHORYL-ETHANOLAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-406))
REACTION-LAYOUT - (ETHANOLAMINE-KINASE-RXN (:LEFT-PRIMARIES ETHANOL-AMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHORYL-ETHANOLAMINE))
REACTION-LAYOUT - (RXN-5641 (:LEFT-PRIMARIES SER) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ETHANOL-AMINE))
REACTION-LIST - RXN-5647
REACTION-LIST - RXN-5643
REACTION-LIST - RXN-5642
REACTION-LIST - 2.1.1.103-RXN
REACTION-LIST - ETHANOLAMINE-KINASE-RXN
REACTION-LIST - RXN-5641
//
UNIQUE-ID - PWY-3561
TYPES - Choline-Biosynthesis
COMMON-NAME - choline biosynthesis III
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |hartmut|
PATHWAY-LINKS - (PHOSPHORYL-CHOLINE PWY-3385)
PREDECESSORS - (PHOSCHOL-RXN RXN-5781)
PREDECESSORS - (RXN-5781 2.7.7.15-RXN)
PREDECESSORS - (2.7.7.15-RXN)
PRIMARIES - (RXN-5781 (CDP-CHOLINE) (PHOSPHATIDYLCHOLINE))
PRIMARIES - (PHOSCHOL-RXN (PHOSPHATIDYLCHOLINE) (CHOLINE))
PRIMARIES - (2.7.8.2-RXN (CDP-CHOLINE) (PHOSPHATIDYLCHOLINE))
PRIMARIES - (2.7.7.15-RXN (PHOSPHORYL-CHOLINE) (CDP-CHOLINE))
REACTION-LAYOUT - (RXN-5781 (:LEFT-PRIMARIES CDP-CHOLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHATIDYLCHOLINE))
REACTION-LAYOUT - (PHOSCHOL-RXN (:LEFT-PRIMARIES PHOSPHATIDYLCHOLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CHOLINE))
REACTION-LAYOUT - (2.7.7.15-RXN (:LEFT-PRIMARIES PHOSPHORYL-CHOLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CDP-CHOLINE))
REACTION-LIST - RXN-5781
REACTION-LIST - PHOSCHOL-RXN
REACTION-LIST - 2.7.7.15-RXN
//
UNIQUE-ID - FASYN-ELONG-PWY
TYPES - Fatty-acid-biosynthesis
COMMON-NAME - fatty acid elongation -- saturated
CITATIONS - :EV-COMP-AINF:3497824359:liya
CLASS-INSTANCE-LINKS - 3-OXOACYL-ACP-REDUCT-RXN
PATHWAY-LINKS - (|Acetoacetyl-ACPs| (PWY-4381 . :INCOMING))
POLYMERIZATION-LINKS - (|Saturated-Fatty-Acyl-ACPs| ENOYL-ACP-REDUCT-NADH-RXN 3-OXOACYL-ACP-SYNTH-RXN)
PREDECESSORS - (ENOYL-ACP-REDUCT-NADPH-RXN 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN)
PREDECESSORS - (ENOYL-ACP-REDUCT-NADH-RXN 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN)
PREDECESSORS - (3-HYDROXYDECANOYL-ACP-DEHYDR-RXN 3-OXOACYL-ACP-REDUCT-RXN)
PREDECESSORS - (3-OXOACYL-ACP-REDUCT-RXN 3-OXOACYL-ACP-SYNTH-RXN)
PRIMARIES - (ENOYL-ACP-REDUCT-NADPH-RXN (TRANS-D2-ENOYL-ACP) NIL)
REACTION-LAYOUT - (3-OXOACYL-ACP-SYNTH-RXN (:LEFT-PRIMARIES |Saturated-Fatty-Acyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES B-KETOACYL-ACP))
REACTION-LAYOUT - (3-OXOACYL-ACP-REDUCT-RXN (:LEFT-PRIMARIES OH-ACYL-ACP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES B-KETOACYL-ACP))
REACTION-LAYOUT - (ENOYL-ACP-REDUCT-NADH-RXN (:LEFT-PRIMARIES |Saturated-Fatty-Acyl-ACPs|) (:DIRECTION :R2L) (:RIGHT-PRIMARIES TRANS-D2-ENOYL-ACP))
REACTION-LAYOUT - (ENOYL-ACP-REDUCT-NADPH-RXN (:LEFT-PRIMARIES |Saturated-Fatty-Acyl-ACPs|) (:DIRECTION :R2L) (:RIGHT-PRIMARIES TRANS-D2-ENOYL-ACP))
REACTION-LAYOUT - (3-HYDROXYDECANOYL-ACP-DEHYDR-RXN (:LEFT-PRIMARIES OH-ACYL-ACP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TRANS-D2-ENOYL-ACP))
REACTION-LIST - 3-OXOACYL-ACP-SYNTH-RXN
REACTION-LIST - 3-OXOACYL-ACP-REDUCT-RXN
REACTION-LIST - ENOYL-ACP-REDUCT-NADH-RXN
REACTION-LIST - ENOYL-ACP-REDUCT-NADPH-RXN
REACTION-LIST - 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN
//
UNIQUE-ID - PWY-5973
TYPES - Fatty-acid-biosynthesis
COMMON-NAME - cis-vaccenate biosynthesis
CITATIONS - :EV-COMP-AINF:3497824359:liya
CREDITS - SRI
CREDITS - |caspi|
PREDECESSORS - (RXN-9555 RXN-9558)
PREDECESSORS - (RXN-9558 RXN-9557)
PREDECESSORS - (RXN-9557 RXN-9556)
PREDECESSORS - (RXN-9556 2.3.1.179-RXN)
PRIMARIES - (2.3.1.179-RXN (|Palmitoleoyl-ACPs|) NIL)
PRIMARIES - (RXN-9555 (|Cis-vaccenoyl-ACPs|) (CPD-9247))
PRIMARIES - (RXN-9550 NIL (CPD-9245))
REACTION-LAYOUT - (RXN-9558 (:LEFT-PRIMARIES |cis-vaccen-2-enoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Cis-vaccenoyl-ACPs|))
REACTION-LAYOUT - (RXN-9557 (:LEFT-PRIMARIES |R-3-hydroxy-cis-vaccenoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |cis-vaccen-2-enoyl-ACPs|))
REACTION-LAYOUT - (RXN-9556 (:LEFT-PRIMARIES |R-3-hydroxy-cis-vaccenoyl-ACPs|) (:DIRECTION :R2L) (:RIGHT-PRIMARIES |3-oxo-cis-vaccenoyl-ACPs|))
REACTION-LAYOUT - (2.3.1.179-RXN (:LEFT-PRIMARIES |Palmitoleoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |3-oxo-cis-vaccenoyl-ACPs|))
REACTION-LAYOUT - (RXN-9555 (:LEFT-PRIMARIES |Cis-vaccenoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9247))
REACTION-LIST - RXN-9558
REACTION-LIST - RXN-9557
REACTION-LIST - RXN-9556
REACTION-LIST - 2.3.1.179-RXN
REACTION-LIST - RXN-9555
SYNONYMS - cis vaccenic acid acid biosynthesis
//
UNIQUE-ID - PWY-5080
TYPES - Fatty-acid-biosynthesis
COMMON-NAME - very long chain fatty acid biosynthesis
CITATIONS - :EV-COMP-AINF:3497824356:liya
CREDITS - SRI
CREDITS - |caspi|
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |zhang|
POLYMERIZATION-LINKS - (|Fatty-Acyl-CoA| RXN-7711 RXN-7697)
PREDECESSORS - (RXN-7699 RXN-7698)
PREDECESSORS - (RXN-7698 RXN-7697)
PREDECESSORS - (RXN-7711 RXN-7699)
PRIMARIES - (RXN-7711 (TRANS-D2-ENOYL-COA) (|Fatty-Acyl-CoA|))
PRIMARIES - (RXN-7701 (TRANS-D2-ENOYL-COA) (|Fatty-Acyl-CoA|))
PRIMARIES - (RXN-7697 (|Fatty-Acyl-CoA|) (3-KETOACYL-COA))
REACTION-LAYOUT - (RXN-7699 (:LEFT-PRIMARIES D-3-HYDROXYACYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TRANS-D2-ENOYL-COA))
REACTION-LAYOUT - (RXN-7711 (:LEFT-PRIMARIES TRANS-D2-ENOYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Fatty-Acyl-CoA|))
REACTION-LAYOUT - (RXN-7698 (:LEFT-PRIMARIES D-3-HYDROXYACYL-COA) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 3-KETOACYL-COA))
REACTION-LAYOUT - (RXN-7697 (:LEFT-PRIMARIES |Fatty-Acyl-CoA|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-KETOACYL-COA))
REACTION-LIST - RXN-7699
REACTION-LIST - RXN-7711
REACTION-LIST - RXN-7698
REACTION-LIST - RXN-7697
SYNONYMS - VLCFAs biosynthesis
//
UNIQUE-ID - PWY-4381
TYPES - Fatty-acid-biosynthesis
COMMON-NAME - fatty acid biosynthesis initiation I
CITATIONS - :EV-COMP-AINF:3497824358:liya
CREDITS - SRI
CREDITS - |caspi|
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |zhang|
KEY-REACTIONS - 2.3.1.180-RXN
PATHWAY-LINKS - (|Acetoacetyl-ACPs| FASYN-ELONG-PWY)
PREDECESSORS - (2.3.1.180-RXN MALONYL-COA-ACP-TRANSACYL-RXN)
PREDECESSORS - (MALONYL-COA-ACP-TRANSACYL-RXN ACETYL-COA-CARBOXYLTRANSFER-RXN)
PRIMARIES - (ACETYL-COA-CARBOXYLTRANSFER-RXN (ACETYL-COA) (MALONYL-COA))
PRIMARIES - (2.3.1.180-RXN (MALONYL-ACP) NIL)
PRIMARIES - (ACP-S-ACETYLTRANSFER-RXN (ACETYL-COA) (ACETYL-ACP))
PRIMARIES - (3-OXOACYL-ACP-SYNTH-BASE-RXN (ACETYL-ACP MALONYL-ACP) NIL)
PRIMARIES - (MALONYL-COA-ACP-TRANSACYL-RXN (MALONYL-COA) (MALONYL-ACP))
REACTION-LAYOUT - (2.3.1.180-RXN (:LEFT-PRIMARIES MALONYL-ACP ACETYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Acetoacetyl-ACPs|))
REACTION-LAYOUT - (MALONYL-COA-ACP-TRANSACYL-RXN (:LEFT-PRIMARIES MALONYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MALONYL-ACP))
REACTION-LAYOUT - (ACETYL-COA-CARBOXYLTRANSFER-RXN (:LEFT-PRIMARIES ACETYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MALONYL-COA))
REACTION-LIST - 2.3.1.180-RXN
REACTION-LIST - MALONYL-COA-ACP-TRANSACYL-RXN
REACTION-LIST - ACETYL-COA-CARBOXYLTRANSFER-RXN
SYNONYMS - de novo fatty acid biosynthesis, initial reactions
//
UNIQUE-ID - PWY-5367
TYPES - Unusual-fatty-acid-biosynthesis
COMMON-NAME - petroselinate biosynthesis
CITATIONS - :EV-COMP-AINF:3497824359:liya
CREDITS - SRI
CREDITS - |caspi|
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |zhang|
PREDECESSORS - (RXN-9551 RXN-9554)
PREDECESSORS - (RXN-9554 RXN-9553)
PREDECESSORS - (RXN-9553 RXN-9552)
PREDECESSORS - (RXN-9552 RXN-8391)
PREDECESSORS - (RXN-8391 RXN-8390)
PRIMARIES - (RXN-9551 (|Petroselinoyl-ACPs|) (CPD-8477))
REACTION-LAYOUT - (RXN-9554 (:LEFT-PRIMARIES |Petroselinoyl-ACPs|) (:DIRECTION :R2L) (:RIGHT-PRIMARIES |Petrosel-2-enoyl-ACPs|))
REACTION-LAYOUT - (RXN-9553 (:LEFT-PRIMARIES |R-3-hydroxypetroselinoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Petrosel-2-enoyl-ACPs|))
REACTION-LAYOUT - (RXN-9552 (:LEFT-PRIMARIES |3-oxo-petroselinoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |R-3-hydroxypetroselinoyl-ACPs|))
REACTION-LAYOUT - (RXN-9551 (:LEFT-PRIMARIES |Petroselinoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8477))
REACTION-LAYOUT - (RXN-8391 (:LEFT-PRIMARIES |Delta4-hexadecenoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |3-oxo-petroselinoyl-ACPs|))
REACTION-LAYOUT - (RXN-8390 (:LEFT-PRIMARIES |Palmitoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Delta4-hexadecenoyl-ACPs|))
REACTION-LIST - RXN-9554
REACTION-LIST - RXN-9553
REACTION-LIST - RXN-9552
REACTION-LIST - RXN-9551
REACTION-LIST - RXN-8391
REACTION-LIST - RXN-8390
SYNONYMS - petroselinic acid biosynthesis
//
UNIQUE-ID - PWY-4942
TYPES - Cyclopropane-fatty-acid-biosyn
COMMON-NAME - cyclopropane and cyclopropene fatty acid biosynthesis
CITATIONS - :EV-COMP-AINF:3497824359:liya
PATHWAY-LINKS - (OLEATE-CPD PWY-5147)
PREDECESSORS - (RXN-7422 RXN-7421)
PRIMARIES - (RXN-7422 (DIHYDROSTERCULIC-ACID) (STERCULATE))
PRIMARIES - (RXN-7421 (OLEATE-CPD) (DIHYDROSTERCULIC-ACID))
REACTION-LAYOUT - (RXN-7422 (:LEFT-PRIMARIES DIHYDROSTERCULIC-ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES STERCULATE))
REACTION-LAYOUT - (RXN-7421 (:LEFT-PRIMARIES OLEATE-CPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROSTERCULIC-ACID))
REACTION-LIST - RXN-7422
REACTION-LIST - RXN-7421
//
UNIQUE-ID - PWY0-541
TYPES - Cyclopropane-fatty-acid-biosyn
COMMON-NAME - cyclopropane fatty acid (CFA) biosynthesis
CITATIONS - :EV-COMP-AINF:3497824359:liya
REACTION-LAYOUT - (2.1.1.79-RXN (:LEFT-PRIMARIES |Phospholipid-Olefinic-Fatty-Acids|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Phospholipid-Cyclopropane-Fatty-Acids|))
REACTION-LIST - 2.1.1.79-RXN
//
UNIQUE-ID - PWY-5995
TYPES - Linoleate-Biosynthesis
COMMON-NAME - linoleate biosynthesis I (plants)
CITATIONS - :EV-COMP-AINF:3497824357:liya
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (OLEATE-CPD PWY-5147)
PREDECESSORS - (RXN-9669 RXN-9670)
PREDECESSORS - (RXN-9670 RXN-9644)
PREDECESSORS - (RXN-9644)
PRIMARIES - (RXN-9644 (OLEATE-CPD) (OLEOYL-COA))
PRIMARIES - (LINOLEOYL-RXN NIL (LINOLEIC_ACID))
PRIMARIES - (1.14.19.1-RXN (STEAROYL-COA) NIL)
REACTION-LAYOUT - (RXN-9669 (:LEFT-PRIMARIES |Oleoyl-groups|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Linoleoyl-groups|))
REACTION-LAYOUT - (RXN-9670 (:LEFT-PRIMARIES OLEOYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Oleoyl-groups|))
REACTION-LAYOUT - (RXN-9644 (:LEFT-PRIMARIES OLEATE-CPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OLEOYL-COA))
REACTION-LIST - RXN-9669
REACTION-LIST - RXN-9670
REACTION-LIST - RXN-9644
//
UNIQUE-ID - PWY-5366
TYPES - Palmitoleate-Biosynthesis
COMMON-NAME - palmitoleate biosynthesis II
CITATIONS - :EV-COMP-AINF:3497824359:liya
CREDITS - SRI
CREDITS - |caspi|
CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE
CREDITS - |zhang|
PATHWAY-LINKS - (|Palmitoleoyl-ACPs| PWY-5973)
PREDECESSORS - (RXN-9550 RXN-8389)
PREDECESSORS - (RXN-8389)
PRIMARIES - (RXN-9550 NIL (CPD-9245))
REACTION-LAYOUT - (RXN-9550 (:LEFT-PRIMARIES |Palmitoleoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9245))
REACTION-LAYOUT - (RXN-8389 (:LEFT-PRIMARIES |Palmitoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Palmitoleoyl-ACPs|))
REACTION-LIST - RXN-9550
REACTION-LIST - RXN-8389
SYNONYMS - palmitoleic acid biosynthesis
//
UNIQUE-ID - PWY-5989
TYPES - Stearate-Biosynthesis
COMMON-NAME - stearate biosynthesis II (plants)
CITATIONS - :EV-COMP-AINF:3497824359:liya
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (|Stearoyl-ACPs| PWY-5147)
PREDECESSORS - (RXN-9548 RXN-9635)
PREDECESSORS - (RXN-9635 RXN-9634)
PREDECESSORS - (RXN-9634 RXN-9633)
PREDECESSORS - (RXN-9633 RXN-9632)
PRIMARIES - (RXN-9632 (|Palmitoyl-ACPs|) NIL)
PRIMARIES - (RXN-9623 (PALMITATE) (PALMITYL-COA))
PRIMARIES - (RXN-9548 NIL (STEARIC_ACID))
REACTION-LAYOUT - (RXN-9548 (:LEFT-PRIMARIES |Stearoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES STEARIC_ACID))
REACTION-LAYOUT - (RXN-9635 (:LEFT-PRIMARIES |Stearoyl-ACPs|) (:DIRECTION :R2L) (:RIGHT-PRIMARIES |Octadec-2-enoyl-ACPs|))
REACTION-LAYOUT - (RXN-9634 (:LEFT-PRIMARIES |R-3-hydroxystearoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Octadec-2-enoyl-ACPs|))
REACTION-LAYOUT - (RXN-9633 (:LEFT-PRIMARIES |R-3-hydroxystearoyl-ACPs|) (:DIRECTION :R2L) (:RIGHT-PRIMARIES |3-oxo-stearoyl-ACPs|))
REACTION-LAYOUT - (RXN-9632 (:LEFT-PRIMARIES |Palmitoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |3-oxo-stearoyl-ACPs|))
REACTION-LIST - RXN-9548
REACTION-LIST - RXN-9635
REACTION-LIST - RXN-9634
REACTION-LIST - RXN-9633
REACTION-LIST - RXN-9632
SYNONYMS - stearic acid biosynthesis
//
UNIQUE-ID - PWY-5147
TYPES - Oleate-Biosynthesis
COMMON-NAME - oleate biosynthesis I (plants)
CITATIONS - :EV-COMP-AINF:3497824359:liya
CREDITS - SRI
CREDITS - |caspi|
PATHWAY-LINKS - (|Oleoyl-ACPs| PWY-5995)
PATHWAY-LINKS - (OLEATE-CPD PWY-1121 PWY-4942)
PATHWAY-LINKS - (|Stearoyl-ACPs| PWY-5989)
PREDECESSORS - (3.1.2.14-RXN RXN-7903)
PREDECESSORS - (RXN-7903)
PRIMARIES - (3.1.2.14-RXN NIL (OLEATE-CPD))
PRIMARIES - (RXN-7903 (|Stearoyl-ACPs|) (|Oleoyl-ACPs|))
REACTION-LAYOUT - (3.1.2.14-RXN (:LEFT-PRIMARIES |Oleoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OLEATE-CPD))
REACTION-LAYOUT - (RXN-7903 (:LEFT-PRIMARIES |Stearoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Oleoyl-ACPs|))
REACTION-LIST - 3.1.2.14-RXN
REACTION-LIST - RXN-7903
SYNONYMS - stearoyl-ACP desaturation pathway
//
UNIQUE-ID - PWY-4441
TYPES - Activation
COMMON-NAME - DIMBOA-glucoside degradation
CITATIONS - :EV-COMP-AINF:3497824357:liya
PREDECESSORS - (RXN-7082)
PRIMARIES - (RXN-7082 (CPD-6562) (CPD-6366))
REACTION-LAYOUT - (RXN-7082 (:LEFT-PRIMARIES CPD-6562) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6366))
REACTION-LIST - RXN-7082
//