# # # Authors: # Pankaj Jaiswal # Liya Ren # Palitha Dharmawardhana # Doreen Ware # # Please see the license agreement regarding the use of and distribution of this file. # The format of this file is defined at http://bioinformatics.ai.sri.com/ptools/flatfile-format.html . # # Species: Brachypodium distachyon # Database: BrachyCyc # Version: 2.0.1.1 # File Name: pathways.dat # Date and time generated: June 18, 2013, 14:28:07 # UNIQUE-ID - PWY-2261 TYPES - Detoxification COMMON-NAME - ascorbate glutathione cycle CITATIONS - :EV-COMP-AINF:3497824357:liya PREDECESSORS - (GLUTATHIONE-REDUCT-NADPH-RXN 1.8.5.1-RXN) PREDECESSORS - (RXN-3521 RXN-3522) PREDECESSORS - (RXN-3522 RXN-3541) PREDECESSORS - (RXN-3523 RXN-3521) PREDECESSORS - (RXN-3523 RXN-3541) PREDECESSORS - (1.8.5.1-RXN RXN-3523) PREDECESSORS - (RXN-3521 1.8.5.1-RXN) PREDECESSORS - (RXN-3541 1.8.5.1-RXN) PRIMARIES - (RXN-3541 (ASCORBATE) (CPD-318)) PRIMARIES - (RXN-3523 (CPD-318) (L-DEHYDRO-ASCORBATE)) PRIMARIES - (RXN-3522 (CPD-318) (ASCORBATE)) PRIMARIES - (RXN-3521 (ASCORBATE) (CPD-318)) PRIMARIES - (GLUTATHIONE-REDUCT-NADPH-RXN (OXIDIZED-GLUTATHIONE) (GLUTATHIONE)) PRIMARIES - (1.8.5.1-RXN (L-DEHYDRO-ASCORBATE) (ASCORBATE)) PRIMARIES - (1.6.5.4-RXN (CPD-318) (ASCORBATE)) PRIMARIES - (L-ASCORBATE-PEROXIDASE-RXN (ASCORBATE) (L-DEHYDRO-ASCORBATE)) REACTION-LAYOUT - (RXN-3541 (:LEFT-PRIMARIES ASCORBATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-318)) REACTION-LAYOUT - (RXN-3523 (:LEFT-PRIMARIES CPD-318) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-DEHYDRO-ASCORBATE ASCORBATE)) REACTION-LAYOUT - (RXN-3522 (:LEFT-PRIMARIES CPD-318) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ASCORBATE)) REACTION-LAYOUT - (RXN-3521 (:LEFT-PRIMARIES ASCORBATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-318)) REACTION-LAYOUT - (GLUTATHIONE-REDUCT-NADPH-RXN (:LEFT-PRIMARIES GLUTATHIONE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES OXIDIZED-GLUTATHIONE)) REACTION-LAYOUT - (1.8.5.1-RXN (:LEFT-PRIMARIES GLUTATHIONE L-DEHYDRO-ASCORBATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ASCORBATE OXIDIZED-GLUTATHIONE)) REACTION-LIST - RXN-3541 REACTION-LIST - RXN-3523 REACTION-LIST - RXN-3522 REACTION-LIST - RXN-3521 REACTION-LIST - GLUTATHIONE-REDUCT-NADPH-RXN REACTION-LIST - 1.8.5.1-RXN SYNONYMS - removal of H2O2 SYNONYMS - hydrogen peroxide detoxification // UNIQUE-ID - DETOX1-PWY TYPES - Detoxification COMMON-NAME - removal of superoxide radicals CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |caspi| CREDITS - O-18 CREDITS - |riley| CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |hartmut| PREDECESSORS - (SUPEROX-DISMUT-RXN) PREDECESSORS - (CATAL-RXN SUPEROX-DISMUT-RXN) PRIMARIES - (SUPEROX-DISMUT-RXN (SUPER-OXIDE) (HYDROGEN-PEROXIDE)) PRIMARIES - (CATAL-RXN (HYDROGEN-PEROXIDE) (OXYGEN-MOLECULE)) REACTION-LAYOUT - (CATAL-RXN (:LEFT-PRIMARIES HYDROGEN-PEROXIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OXYGEN-MOLECULE)) REACTION-LAYOUT - (SUPEROX-DISMUT-RXN (:LEFT-PRIMARIES SUPER-OXIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OXYGEN-MOLECULE HYDROGEN-PEROXIDE)) REACTION-LIST - CATAL-RXN REACTION-LIST - SUPEROX-DISMUT-RXN // UNIQUE-ID - CYANCAT-PWY TYPES - NITROGEN-DEG TYPES - Detoxification COMMON-NAME - cyanate degradation CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - O-18 CREDITS - |riley| CREDITS - SRI CREDITS - |keseler| KEY-REACTIONS - R524-RXN PREDECESSORS - (RXN0-5224 RXN0-5222) PREDECESSORS - (RXN0-5222 R524-RXN) PRIMARIES - (RXN0-5222 (CARBAMATE) (CARBON-DIOXIDE)) REACTION-LAYOUT - (R524-RXN (:LEFT-PRIMARIES HCO3 CPD-69) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CARBON-DIOXIDE CARBAMATE)) REACTION-LAYOUT - (RXN0-5224 (:LEFT-PRIMARIES CARBON-DIOXIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HCO3)) REACTION-LAYOUT - (RXN0-5222 (:LEFT-PRIMARIES CARBAMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CARBON-DIOXIDE)) REACTION-LIST - R524-RXN REACTION-LIST - RXN0-5224 REACTION-LIST - RXN0-5222 SYNONYMS - cyanate catabolism // UNIQUE-ID - ASPSYNII-PWY TYPES - ASPARAGINE-SYN TYPES - Cyanide-Detoxification TYPES - Other-Degradation COMMON-NAME - cyanide detoxification CITATIONS - :EV-COMP-AINF:3497824356:liya PREDECESSORS - (3.5.5.4-RXN L-3-CYANOALANINE-SYNTHASE-RXN) PREDECESSORS - (3-CYANOALANINE-HYDRATASE-RXN L-3-CYANOALANINE-SYNTHASE-RXN) PRIMARIES - (3.5.5.4-RXN (CPD-603) (L-ASPARTATE)) REACTION-LAYOUT - (3.5.5.4-RXN (:LEFT-PRIMARIES CPD-603) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-ASPARTATE)) REACTION-LAYOUT - (3-CYANOALANINE-HYDRATASE-RXN (:LEFT-PRIMARIES ASN) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CPD-603)) REACTION-LAYOUT - (L-3-CYANOALANINE-SYNTHASE-RXN (:LEFT-PRIMARIES HCN CYS) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-603)) REACTION-LIST - 3.5.5.4-RXN REACTION-LIST - 3-CYANOALANINE-HYDRATASE-RXN REACTION-LIST - L-3-CYANOALANINE-SYNTHASE-RXN SYNONYMS - β-cyanoalanine biosynthesis SYNONYMS - asparagine biosynthesis II // UNIQUE-ID - PWY-724 TYPES - Amino-Acid-Biosynthesis TYPES - Super-Pathways COMMON-NAME - superpathway of lysine, threonine and methionine biosynthesis II PREDECESSORS - PWY-5097 PREDECESSORS - (HOMOSERKIN-RXN HOMOSERDEHYDROG-RXN) PREDECESSORS - HOMOSERSYN-PWY PREDECESSORS - PWY-702 PREDECESSORS - HOMOSER-THRESYN-PWY REACTION-LAYOUT - (PWY-5097 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (HOMOSERSYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (PWY-702 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (HOMOSER-THRESYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LIST - PWY-5097 REACTION-LIST - HOMOSERSYN-PWY REACTION-LIST - PWY-702 REACTION-LIST - HOMOSER-THRESYN-PWY SUB-PATHWAYS - PWY-5097 SUB-PATHWAYS - HOMOSERSYN-PWY SUB-PATHWAYS - PWY-702 SUB-PATHWAYS - HOMOSER-THRESYN-PWY SYNONYMS - aspartate super pathway // UNIQUE-ID - PWY4FS-5 TYPES - Super-Pathways COMMON-NAME - superpathway of phosphatidylcholine biosynthesis CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |zhang| PREDECESSORS - PWY4FS-4 PREDECESSORS - PWY4FS-3 PREDECESSORS - PWY4FS-2 PREDECESSORS - PWY3O-450 REACTION-LAYOUT - (PWY4FS-4 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (PWY4FS-3 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (PWY4FS-2 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (PWY3O-450 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LIST - PWY4FS-4 REACTION-LIST - PWY4FS-3 REACTION-LIST - PWY4FS-2 REACTION-LIST - PWY3O-450 SUB-PATHWAYS - PWY4FS-4 SUB-PATHWAYS - PWY4FS-3 SUB-PATHWAYS - PWY4FS-2 SUB-PATHWAYS - PWY3O-450 // UNIQUE-ID - PWY-5053 TYPES - GIBBERELLIN-SYN TYPES - Super-Pathways COMMON-NAME - superpathway of GA12 biosynthesis PATHWAY-LINKS - (CPD1F-95 PWY-5052) PREDECESSORS - (1.14.13.78-RXN 4.2.3.19-RXN) PREDECESSORS - (4.2.3.19-RXN 1.14.13.78-RXN) PREDECESSORS - PWY-5034 PREDECESSORS - PWY-5032 REACTION-LAYOUT - (PWY-5034 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (PWY-5032 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LIST - PWY-5034 REACTION-LIST - PWY-5032 SUB-PATHWAYS - PWY-5034 SUB-PATHWAYS - PWY-5032 // UNIQUE-ID - PWY-4361 TYPES - Super-Pathways TYPES - METHIONINE-SYN COMMON-NAME - methionine salvage pathway CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - |caspi| CREDITS - SRI CREDITS - |krieger| CREDITS - O-18 CREDITS - |pellegrini-toole| CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |tissier| PATHWAY-LINKS - (MET SAM-PWY) PATHWAY-LINKS - (5-METHYLTHIOADENOSINE ARGSPECAT-PWY BSUBPOLYAMSYN-PWY) PREDECESSORS - (R15-RXN R147-RXN) PREDECESSORS - (R147-RXN R83-RXN) PREDECESSORS - (R145-RXN 5.3.1.23-RXN) PREDECESSORS - (5.3.1.23-RXN 5-METHYLTHIORIBOSE-KINASE-RXN) PREDECESSORS - (5-METHYLTHIORIBOSE-KINASE-RXN METHYLTHIOADENOSINE-NUCLEOSIDASE-RXN) PREDECESSORS - (R82-RXN R145-RXN) PREDECESSORS - (R83-RXN R82-RXN) PRIMARIES - (4.4.1.14-RXN (S-ADENOSYLMETHIONINE) (5-METHYLTHIOADENOSINE)) PRIMARIES - (R15-RXN (CPD-479) (MET)) PRIMARIES - (R147-RXN (CPD-85) (CPD-479)) PRIMARIES - (R83-RXN (2-HYDROXY-3-KETO-5-METHYLTHIO-1-PHOSPHOP) (CPD-85)) PRIMARIES - (R82-RXN (CPD-8999) (2-HYDROXY-3-KETO-5-METHYLTHIO-1-PHOSPHOP)) PRIMARIES - (R145-RXN (CPD-1063) (CPD-8999)) PRIMARIES - (5.3.1.23-RXN (CPD-444) (CPD-1063)) PRIMARIES - (5-METHYLTHIORIBOSE-KINASE-RXN (CPD-560) (CPD-444)) PRIMARIES - (S-ADENMETSYN-RXN (MET) (S-ADENOSYLMETHIONINE)) PRIMARIES - (METHYLTHIOADENOSINE-NUCLEOSIDASE-RXN (5-METHYLTHIOADENOSINE) (CPD-560)) PRIMARIES - (SPERMINE-SYNTHASE-RXN (S-ADENOSYLMETHIONINAMINE) (5-METHYLTHIOADENOSINE)) PRIMARIES - (SPERMIDINESYN-RXN (S-ADENOSYLMETHIONINAMINE) (5-METHYLTHIOADENOSINE)) REACTION-LAYOUT - (R15-RXN (:LEFT-PRIMARIES CPD-479) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MET)) REACTION-LAYOUT - (R147-RXN (:LEFT-PRIMARIES CPD-85) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-479)) REACTION-LAYOUT - (R83-RXN (:LEFT-PRIMARIES 2-HYDROXY-3-KETO-5-METHYLTHIO-1-PHOSPHOP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-85)) REACTION-LAYOUT - (R82-RXN (:LEFT-PRIMARIES CPD-8999) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-HYDROXY-3-KETO-5-METHYLTHIO-1-PHOSPHOP)) REACTION-LAYOUT - (5.3.1.23-RXN (:LEFT-PRIMARIES CPD-444) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-1063)) REACTION-LAYOUT - (R145-RXN (:LEFT-PRIMARIES CPD-1063) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8999)) REACTION-LAYOUT - (5-METHYLTHIORIBOSE-KINASE-RXN (:LEFT-PRIMARIES CPD-560) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-444)) REACTION-LAYOUT - (METHYLTHIOADENOSINE-NUCLEOSIDASE-RXN (:LEFT-PRIMARIES 5-METHYLTHIOADENOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-560)) REACTION-LIST - R15-RXN REACTION-LIST - R147-RXN REACTION-LIST - R83-RXN REACTION-LIST - R82-RXN REACTION-LIST - 5.3.1.23-RXN REACTION-LIST - R145-RXN REACTION-LIST - 5-METHYLTHIORIBOSE-KINASE-RXN REACTION-LIST - METHYLTHIOADENOSINE-NUCLEOSIDASE-RXN SYNONYMS - Yang cycle SYNONYMS - methylthioadenosine recycling SYNONYMS - methionine regeneration SYNONYMS - methionine recycling SYNONYMS - methylthioribose recycling // UNIQUE-ID - PENTOSE-P-PWY TYPES - Pentose-Phosphate-Cycle TYPES - Super-Pathways COMMON-NAME - pentose phosphate pathway CREDITS - O0-3 CREDITS - |ingraham| PATHWAY-LINKS - (GLC-6-P PWY-842) PREDECESSORS - OXIDATIVEPENT-PWY PREDECESSORS - NONOXIPENT-PWY PREDECESSORS - (RIBULP3EPIM-RXN 6PGLUCONDEHYDROG-RXN) PREDECESSORS - (RIB5PISOM-RXN 6PGLUCONDEHYDROG-RXN) REACTION-LAYOUT - (OXIDATIVEPENT-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (NONOXIPENT-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LIST - OXIDATIVEPENT-PWY REACTION-LIST - NONOXIPENT-PWY SUB-PATHWAYS - NONOXIPENT-PWY SUB-PATHWAYS - OXIDATIVEPENT-PWY SYNONYMS - pentose shunt SYNONYMS - hexose monophosphate shunt SYNONYMS - phosphogluconate pathway SYNONYMS - superpathway of oxidative and non-oxidative branches of pentose phosphate pathway // UNIQUE-ID - PWY-3282 TYPES - Ammonia-Assimilation TYPES - Super-Pathways COMMON-NAME - ammonia assimilation cycle II CITATIONS - :EV-COMP-AINF:3497824357:liya PREDECESSORS - (GLUTAMATE-SYNTHASE-NADH-RXN GLUTAMINESYN-RXN) PREDECESSORS - (GLUTAMATE-SYNTHASE-FERREDOXIN-RXN GLUTAMINESYN-RXN) PRIMARIES - (GLUTAMATE-SYNTHASE-FERREDOXIN-RXN (GLN) (GLT)) PRIMARIES - (GLUTAMATE-SYNTHASE-NADH-RXN (GLN) (GLT)) PRIMARIES - (GLUTAMINESYN-RXN (GLT) (GLN)) REACTION-LAYOUT - (GLUTAMATE-SYNTHASE-FERREDOXIN-RXN (:LEFT-PRIMARIES GLT) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GLN)) REACTION-LAYOUT - (GLUTAMATE-SYNTHASE-NADH-RXN (:LEFT-PRIMARIES GLT) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GLN)) REACTION-LAYOUT - (GLUTAMINESYN-RXN (:LEFT-PRIMARIES GLT) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLN)) REACTION-LIST - GLUTAMATE-SYNTHASE-FERREDOXIN-RXN REACTION-LIST - GLUTAMATE-SYNTHASE-NADH-RXN REACTION-LIST - GLUTAMINESYN-RXN SYNONYMS - glutamate synthase cycle // UNIQUE-ID - PWY-4765 TYPES - Cyclitols-Biosynthesis TYPES - Super-Pathways COMMON-NAME - superpathway of lipid-dependent phytate biosynthesis PREDECESSORS - PWY-4562 PREDECESSORS - PWY-4541 REACTION-LAYOUT - (PWY-4562 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (PWY-4541 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LIST - PWY-4562 REACTION-LIST - PWY-4541 SUB-PATHWAYS - PWY-4562 SUB-PATHWAYS - PWY-4541 // UNIQUE-ID - PWY-6277 TYPES - AIR-Biosynthesis TYPES - Super-Pathways COMMON-NAME - superpathway of 5-aminoimidazole ribonucleotide biosynthesis CITATIONS - :EV-COMP-AINF:3498595969:jaiswalp CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (PRPP PWY0-662 PWY0-661) PATHWAY-LINKS - (5-PHOSPHORIBOSYL-5-AMINOIMIDAZOLE DENOVOPURINE2-PWY PWY-841 THISYN-PWY) PREDECESSORS - PWY-6122 PREDECESSORS - PWY-6121 PREDECESSORS - (FGAMSYN-RXN GARTRANSFORMYL2-RXN) PREDECESSORS - (GARTRANSFORMYL2-RXN GLYRIBONUCSYN-RXN) PREDECESSORS - (GLYRIBONUCSYN-RXN PRPPAMIDOTRANS-RXN) PREDECESSORS - (AIRS-RXN FGAMSYN-RXN) PRIMARIES - (AMPSYN-RXN (ADENYLOSUCC) (AMP)) REACTION-LAYOUT - (PWY-6122 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (PWY-6121 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (GARTRANSFORMYL2-RXN (:LEFT-PRIMARIES 5-PHOSPHO-RIBOSYL-GLYCINEAMIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE)) REACTION-LAYOUT - (AIRS-RXN (:LEFT-PRIMARIES 5-PHOSPHORIBOSYL-N-FORMYLGLYCINEAMIDINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-PHOSPHORIBOSYL-5-AMINOIMIDAZOLE)) REACTION-LAYOUT - (FGAMSYN-RXN (:LEFT-PRIMARIES 5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-PHOSPHORIBOSYL-N-FORMYLGLYCINEAMIDINE)) REACTION-LAYOUT - (GLYRIBONUCSYN-RXN (:LEFT-PRIMARIES 5-P-BETA-D-RIBOSYL-AMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-PHOSPHO-RIBOSYL-GLYCINEAMIDE)) REACTION-LAYOUT - (PRPPAMIDOTRANS-RXN (:LEFT-PRIMARIES 5-P-BETA-D-RIBOSYL-AMINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PRPP)) REACTION-LIST - PWY-6122 REACTION-LIST - PWY-6121 REACTION-LIST - GARTRANSFORMYL2-RXN REACTION-LIST - AIRS-RXN REACTION-LIST - FGAMSYN-RXN REACTION-LIST - GLYRIBONUCSYN-RXN REACTION-LIST - PRPPAMIDOTRANS-RXN SUB-PATHWAYS - PWY-6121 // UNIQUE-ID - PWY-5464 TYPES - Super-Pathways TYPES - Energy-Metabolism COMMON-NAME - superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |tissier| PATHWAY-LINKS - (FRUCTOSE-6P PWY-621) PREDECESSORS - (CITSYN-RXN RXN0-1133) PREDECESSORS - PWY-5690 PREDECESSORS - (RXN0-1134 PEPDEPHOS-RXN) PREDECESSORS - PWY-1042 PREDECESSORS - PYRUVDEHYD-PWY PRIMARIES - (MALATE-DEH-RXN (MAL) (OXALACETIC_ACID)) PRIMARIES - (MALATE-DEHYDROGENASE-ACCEPTOR-RXN (MAL) (OXALACETIC_ACID)) PRIMARIES - (FUMHYDR-RXN (FUM) (MAL)) PRIMARIES - (SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN (SUC) (FUM)) PRIMARIES - (SUCCCOASYN-RXN (SUC-COA) (SUC)) PRIMARIES - (2OXOGLUTARATEDEH-RXN (2-KETOGLUTARATE) (SUC-COA)) PRIMARIES - (ISOCITDEH-RXN (THREO-DS-ISO-CITRATE) (2-KETOGLUTARATE)) PRIMARIES - (ACONITATEHYDR-RXN (CIS-ACONITATE) (THREO-DS-ISO-CITRATE)) PRIMARIES - (ACONITATEDEHYDR-RXN (CIT) (CIS-ACONITATE)) PRIMARIES - (CITSYN-RXN (OXALACETIC_ACID ACETYL-COA) (CIT)) PRIMARIES - (6PFRUCTPHOS-RXN (FRUCTOSE-6P) (FRUCTOSE-16-DIPHOSPHATE)) PRIMARIES - (2.7.1.90-RXN (FRUCTOSE-6P) (FRUCTOSE-16-DIPHOSPHATE)) PRIMARIES - (F16ALDOLASE-RXN (FRUCTOSE-16-DIPHOSPHATE) (GAP DIHYDROXY-ACETONE-PHOSPHATE)) PRIMARIES - (TRIOSEPISOMERIZATION-RXN (DIHYDROXY-ACETONE-PHOSPHATE) (GAP)) PRIMARIES - (GAPOXNPHOSPHN-RXN (GAP) (DPG)) PRIMARIES - (PHOSGLYPHOS-RXN (DPG) (G3P)) PRIMARIES - (1.2.1.9-RXN (GAP) (G3P)) PRIMARIES - (3PGAREARR-RXN (G3P) (2-PG)) PRIMARIES - (2PGADEHYDRAT-RXN (2-PG) (PHOSPHO-ENOL-PYRUVATE)) PRIMARIES - (PEPDEPHOS-RXN (PHOSPHO-ENOL-PYRUVATE) (PYRUVATE)) PRIMARIES - (RXN0-1132 (|Pyruvate-dehydrogenase-dihydrolipoate|) (|Pyruvate-dehydrogenase-lipoate|)) PRIMARIES - (RXN0-1134 (|Pyruvate-dehydrogenase-lipoate| PYRUVATE) (|Pyruvate-dehydrogenase-acetylDHlipoyl|)) PRIMARIES - (RXN0-1133 (|Pyruvate-dehydrogenase-acetylDHlipoyl|) (|Pyruvate-dehydrogenase-dihydrolipoate| ACETYL-COA)) REACTION-LAYOUT - (PWY-5690 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (PWY-1042 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (PYRUVDEHYD-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LIST - PWY-5690 REACTION-LIST - PWY-1042 REACTION-LIST - PYRUVDEHYD-PWY SUB-PATHWAYS - PWY-5690 SUB-PATHWAYS - PWY-1042 SUB-PATHWAYS - PYRUVDEHYD-PWY // UNIQUE-ID - PWY-3801 TYPES - SUCROSE-DEG TYPES - Super-Pathways COMMON-NAME - sucrose degradation to ethanol and lactate (anaerobic) PREDECESSORS - PWY-5486 PREDECESSORS - PWY-5481 PREDECESSORS - PWY-5484 PREDECESSORS - (PEPDEPHOS-RXN 2PGADEHYDRAT-RXN) PREDECESSORS - (RXN-6161 PEPDEPHOS-RXN) PREDECESSORS - (L-LACTATE-DEHYDROGENASE-RXN PEPDEPHOS-RXN) PREDECESSORS - (GAPOXNPHOSPHN-RXN TRIOSEPISOMERIZATION-RXN) PREDECESSORS - (TRIOSEPISOMERIZATION-RXN F16ALDOLASE-RXN) PREDECESSORS - (PHOSGLYPHOS-RXN GAPOXNPHOSPHN-RXN) PREDECESSORS - (GAPOXNPHOSPHN-RXN F16ALDOLASE-RXN) PREDECESSORS - (F16ALDOLASE-RXN 6PFRUCTPHOS-RXN) PREDECESSORS - (GLUC1PURIDYLTRANS-RXN SUCROSE-SYNTHASE-RXN) PREDECESSORS - (SUCROSE-SYNTHASE-RXN) PREDECESSORS - (FRUCTOKINASE-RXN SUCROSE-SYNTHASE-RXN) PREDECESSORS - (6PFRUCTPHOS-RXN FRUCTOKINASE-RXN) PREDECESSORS - (3PGAREARR-RXN PHOSGLYPHOS-RXN) PREDECESSORS - (2PGADEHYDRAT-RXN 3PGAREARR-RXN) PREDECESSORS - (ALCOHOL-DEHYDROG-RXN RXN-6161) PREDECESSORS - (PHOSPHOGLUCMUT-RXN GLUC1PURIDYLTRANS-RXN) PREDECESSORS - (6PFRUCTPHOS-RXN RXN-6182) PREDECESSORS - (RXN-6182 PHOSPHOGLUCMUT-RXN) PRIMARIES - (RXN-6182 (ALPHA-GLC-6-P) (FRUCTOSE-6P)) PRIMARIES - (PHOSPHOGLUCMUT-RXN (GLC-1-P) (ALPHA-GLC-6-P)) PRIMARIES - (PEPDEPHOS-RXN (PHOSPHO-ENOL-PYRUVATE) (PYRUVATE)) PRIMARIES - (L-LACTATE-DEHYDROGENASE-RXN (PYRUVATE) (L-LACTATE)) PRIMARIES - (PGLUCISOM-RXN (GLC-6-P) (FRUCTOSE-6P)) PRIMARIES - (ALCOHOL-DEHYDROG-RXN (ACETALD) (ETOH)) PRIMARIES - (RXN-6161 (PYRUVATE) (ACETALD)) PRIMARIES - (2PGADEHYDRAT-RXN (2-PG) (PHOSPHO-ENOL-PYRUVATE)) PRIMARIES - (3PGAREARR-RXN (G3P) (2-PG)) PRIMARIES - (TRIOSEPISOMERIZATION-RXN (DIHYDROXY-ACETONE-PHOSPHATE) (GAP)) PRIMARIES - (PHOSGLYPHOS-RXN (DPG) (G3P)) PRIMARIES - (GAPOXNPHOSPHN-RXN (GAP) (DPG)) PRIMARIES - (F16ALDOLASE-RXN (FRUCTOSE-16-DIPHOSPHATE) (DIHYDROXY-ACETONE-PHOSPHATE GAP)) PRIMARIES - (6PFRUCTPHOS-RXN (FRUCTOSE-6P) (FRUCTOSE-16-DIPHOSPHATE)) PRIMARIES - (FRUCTOKINASE-RXN (FRU) (FRUCTOSE-6P)) PRIMARIES - (GLUC1PURIDYLTRANS-RXN (UDP-GLUCOSE) (GLC-1-P)) PRIMARIES - (SUCROSE-SYNTHASE-RXN (SUCROSE) (FRU UDP-GLUCOSE)) REACTION-LAYOUT - (PWY-5486 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (PWY-5481 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (RXN-6182 (:LEFT-PRIMARIES ALPHA-GLC-6-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-6P)) REACTION-LAYOUT - (PHOSPHOGLUCMUT-RXN (:LEFT-PRIMARIES GLC-1-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALPHA-GLC-6-P)) REACTION-LAYOUT - (PEPDEPHOS-RXN (:LEFT-PRIMARIES PYRUVATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE)) REACTION-LAYOUT - (RXN-6161 (:LEFT-PRIMARIES PYRUVATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ACETALD)) REACTION-LAYOUT - (ALCOHOL-DEHYDROG-RXN (:LEFT-PRIMARIES ACETALD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ETOH)) REACTION-LAYOUT - (L-LACTATE-DEHYDROGENASE-RXN (:LEFT-PRIMARIES L-LACTATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PYRUVATE)) REACTION-LAYOUT - (2PGADEHYDRAT-RXN (:LEFT-PRIMARIES 2-PG) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE)) REACTION-LAYOUT - (3PGAREARR-RXN (:LEFT-PRIMARIES G3P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-PG)) REACTION-LAYOUT - (PHOSGLYPHOS-RXN (:LEFT-PRIMARIES G3P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DPG)) REACTION-LAYOUT - (GAPOXNPHOSPHN-RXN (:LEFT-PRIMARIES GAP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DPG)) REACTION-LAYOUT - (TRIOSEPISOMERIZATION-RXN (:LEFT-PRIMARIES GAP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DIHYDROXY-ACETONE-PHOSPHATE)) REACTION-LAYOUT - (F16ALDOLASE-RXN (:LEFT-PRIMARIES FRUCTOSE-16-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GAP DIHYDROXY-ACETONE-PHOSPHATE)) REACTION-LAYOUT - (6PFRUCTPHOS-RXN (:LEFT-PRIMARIES FRUCTOSE-6P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-16-DIPHOSPHATE)) REACTION-LAYOUT - (FRUCTOKINASE-RXN (:LEFT-PRIMARIES FRU) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-6P)) REACTION-LAYOUT - (GLUC1PURIDYLTRANS-RXN (:LEFT-PRIMARIES GLC-1-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES UDP-GLUCOSE)) REACTION-LAYOUT - (SUCROSE-SYNTHASE-RXN (:LEFT-PRIMARIES FRU UDP-GLUCOSE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES SUCROSE)) REACTION-LIST - PWY-5486 REACTION-LIST - PWY-5481 REACTION-LIST - RXN-6182 REACTION-LIST - PHOSPHOGLUCMUT-RXN REACTION-LIST - PEPDEPHOS-RXN REACTION-LIST - RXN-6161 REACTION-LIST - ALCOHOL-DEHYDROG-RXN REACTION-LIST - L-LACTATE-DEHYDROGENASE-RXN REACTION-LIST - 2PGADEHYDRAT-RXN REACTION-LIST - 3PGAREARR-RXN REACTION-LIST - PHOSGLYPHOS-RXN REACTION-LIST - GAPOXNPHOSPHN-RXN REACTION-LIST - TRIOSEPISOMERIZATION-RXN REACTION-LIST - F16ALDOLASE-RXN REACTION-LIST - 6PFRUCTPHOS-RXN REACTION-LIST - FRUCTOKINASE-RXN REACTION-LIST - GLUC1PURIDYLTRANS-RXN REACTION-LIST - SUCROSE-SYNTHASE-RXN SUB-PATHWAYS - PWY-5484 SUB-PATHWAYS - PWY-5486 SUB-PATHWAYS - PWY-5481 // UNIQUE-ID - PWY4FS-8 TYPES - PhosphatidylglycerolBiosynthesis TYPES - Super-Pathways COMMON-NAME - phosphatidylglycerol biosynthesis II CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |zhang| PREDECESSORS - (PGPPHOSPHA-RXN PHOSPHAGLYPSYN-RXN) PREDECESSORS - (PHOSPHAGLYPSYN-RXN CDPDIGLYSYN-RXN) PREDECESSORS - PWY-5667 PRIMARIES - (PHOSPHAGLYPSYN-RXN (CDPDIACYLGLYCEROL) (L-1-PHOSPHATIDYL-GLYCEROL-P)) PRIMARIES - (PGPPHOSPHA-RXN (L-1-PHOSPHATIDYL-GLYCEROL-P) (L-1-PHOSPHATIDYL-GLYCEROL)) REACTION-LAYOUT - (PGPPHOSPHA-RXN (:LEFT-PRIMARIES L-1-PHOSPHATIDYL-GLYCEROL-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-1-PHOSPHATIDYL-GLYCEROL)) REACTION-LAYOUT - (PHOSPHAGLYPSYN-RXN (:LEFT-PRIMARIES GLYCEROL-3P CDPDIACYLGLYCEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-1-PHOSPHATIDYL-GLYCEROL-P)) REACTION-LAYOUT - (PWY-5667 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LIST - PGPPHOSPHA-RXN REACTION-LIST - PHOSPHAGLYPSYN-RXN REACTION-LIST - PWY-5667 SUB-PATHWAYS - PWY-5667 // UNIQUE-ID - BRANCHED-CHAIN-AA-SYN-PWY TYPES - Amino-Acid-Biosynthesis TYPES - Super-Pathways COMMON-NAME - superpathway of leucine, valine, and isoleucine biosynthesis PREDECESSORS - (2-ISOPROPYLMALATESYN-RXN DIHYDROXYISOVALDEHYDRAT-RXN) PREDECESSORS - ILEUSYN-PWY PREDECESSORS - VALSYN-PWY PREDECESSORS - LEUSYN-PWY REACTION-LAYOUT - (ILEUSYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (VALSYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (LEUSYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LIST - ILEUSYN-PWY REACTION-LIST - VALSYN-PWY REACTION-LIST - LEUSYN-PWY SUB-PATHWAYS - VALSYN-PWY SUB-PATHWAYS - ILEUSYN-PWY SUB-PATHWAYS - LEUSYN-PWY SYNONYMS - branched amino acid biosynthesis // UNIQUE-ID - PWY0-41 TYPES - Allantoin-degradation TYPES - Super-Pathways COMMON-NAME - allantoin degradation IV (anaerobic) CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - |caspi| CREDITS - SRI CREDITS - |keseler| CREDITS - O-18 CREDITS - |pellegrini-toole| HYPOTHETICAL-REACTIONS - CARBAMATE-KINASE-RXN HYPOTHETICAL-REACTIONS - OXAMATE-CARBAMOYLTRANSFERASE-RXN PATHWAY-LINKS - (S-ALLANTOIN (PWY-5044 . :INCOMING)) PATHWAY-LINKS - (G3P GLYCOLYSIS) PREDECESSORS - (CARBAMATE-KINASE-RXN OXAMATE-CARBAMOYLTRANSFERASE-RXN) PREDECESSORS - (OXAMATE-CARBAMOYLTRANSFERASE-RXN R165-RXN) PREDECESSORS - (R165-RXN URUR-RXN) PREDECESSORS - PWY-5698 PRIMARIES - (OXAMATE-CARBAMOYLTRANSFERASE-RXN (CPD-389) (OXAMATE CARBAMOYL-P)) REACTION-LAYOUT - (CARBAMATE-KINASE-RXN (:LEFT-PRIMARIES ATP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CARBAMOYL-P)) REACTION-LAYOUT - (OXAMATE-CARBAMOYLTRANSFERASE-RXN (:LEFT-PRIMARIES CARBAMOYL-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CPD-389)) REACTION-LAYOUT - (R165-RXN (:LEFT-PRIMARIES CPD-1091) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-389)) REACTION-LAYOUT - (PWY-5698 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LIST - CARBAMATE-KINASE-RXN REACTION-LIST - OXAMATE-CARBAMOYLTRANSFERASE-RXN REACTION-LIST - R165-RXN REACTION-LIST - PWY-5698 SUB-PATHWAYS - PWY-5698 // UNIQUE-ID - PWY-561 TYPES - Super-Pathways TYPES - Energy-Metabolism COMMON-NAME - superpathway of glyoxylate cycle CITATIONS - :EV-COMP-AINF:3497824358:liya PATHWAY-LINKS - (PHOSPHO-ENOL-PYRUVATE GLUCONEO-PWY) PREDECESSORS - (FUMHYDR-RXN SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN) PREDECESSORS - GLYOXYLATE-BYPASS PREDECESSORS - (SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN ISOCIT-CLEAV-RXN) PREDECESSORS - (MALATE-DEH-RXN FUMHYDR-RXN) PREDECESSORS - (PEPCARBOXYKIN-RXN MALATE-DEH-RXN) REACTION-LAYOUT - (MALATE-DEH-RXN (:LEFT-PRIMARIES MAL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OXALACETIC_ACID)) REACTION-LAYOUT - (PEPCARBOXYKIN-RXN (:LEFT-PRIMARIES OXALACETIC_ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE)) REACTION-LAYOUT - (SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN (:LEFT-PRIMARIES SUC) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FUM)) REACTION-LAYOUT - (FUMHYDR-RXN (:LEFT-PRIMARIES MAL) (:DIRECTION :R2L) (:RIGHT-PRIMARIES FUM)) REACTION-LAYOUT - (GLYOXYLATE-BYPASS (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LIST - MALATE-DEH-RXN REACTION-LIST - PEPCARBOXYKIN-RXN REACTION-LIST - SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN REACTION-LIST - FUMHYDR-RXN REACTION-LIST - GLYOXYLATE-BYPASS SUB-PATHWAYS - GLYOXYLATE-BYPASS // UNIQUE-ID - PWY-5910 TYPES - DITERPENOID-SYN TYPES - GGPP-Biosynthesis TYPES - Super-Pathways COMMON-NAME - superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (GERANYLGERANYL-PP 2.5.1.60-RXN RXN-3701 PWY-5660 PWY-5416 PWY-5063 PWY-2981 PWY-5032) PREDECESSORS - (FARNESYLTRANSTRANSFERASE-RXN FPPSYN-RXN) PREDECESSORS - PWY-5120 PREDECESSORS - PWY-5123 PREDECESSORS - PWY-922 REACTION-LAYOUT - (PWY-5120 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (PWY-5123 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (PWY-922 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LIST - PWY-5120 REACTION-LIST - PWY-5123 REACTION-LIST - PWY-922 SUB-PATHWAYS - PWY-5120 SUB-PATHWAYS - PWY-5123 SUB-PATHWAYS - PWY-922 SYNONYMS - GGPP biosynthesis // UNIQUE-ID - THISYNARA-PWY TYPES - Super-Pathways TYPES - Thiamine-Biosynthesis COMMON-NAME - thiamine biosynthesis II CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - |dreher| CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |hartmut| PREDECESSORS - (RXNQT-4301 RXNQT-4300) PREDECESSORS - (THI-P-SYN-RXN RXNQT-4301) PREDECESSORS - (THIAMIN-PYROPHOSPHOKINASE-RXN RXNQT-4191) PREDECESSORS - (RXNQT-4191 THI-P-SYN-RXN) PREDECESSORS - (PYRIMSYN3-RXN OHMETPYRKIN-RXN) PREDECESSORS - (PYRIMSYN3-RXN PYRIMSYN1-RXN) PREDECESSORS - (THI-P-SYN-RXN PYRIMSYN3-RXN) REACTION-LAYOUT - (RXNQT-4301 (:LEFT-PRIMARIES CPDQT-400) (:DIRECTION :L2R) (:RIGHT-PRIMARIES THZ-P)) REACTION-LAYOUT - (RXNQT-4300 (:LEFT-PRIMARIES NAD CYS GLY) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPDQT-400)) REACTION-LAYOUT - (THIAMIN-PYROPHOSPHOKINASE-RXN (:LEFT-PRIMARIES THIAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES THIAMINE-PYROPHOSPHATE)) REACTION-LAYOUT - (RXNQT-4191 (:LEFT-PRIMARIES THIAMINE-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES THIAMINE)) REACTION-LAYOUT - (OHMETPYRKIN-RXN (:LEFT-PRIMARIES HMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AMINO-HYDROXYMETHYL-METHYL-PYR-P)) REACTION-LAYOUT - (PYRIMSYN1-RXN (:LEFT-PRIMARIES S-ADENOSYLMETHIONINE 5-PHOSPHORIBOSYL-5-AMINOIMIDAZOLE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AMINO-HYDROXYMETHYL-METHYL-PYR-P)) REACTION-LAYOUT - (PYRIMSYN3-RXN (:LEFT-PRIMARIES AMINO-HYDROXYMETHYL-METHYL-PYR-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP)) REACTION-LAYOUT - (THI-P-SYN-RXN (:LEFT-PRIMARIES AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP THZ-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES THIAMINE-P)) REACTION-LIST - RXNQT-4301 REACTION-LIST - RXNQT-4300 REACTION-LIST - THIAMIN-PYROPHOSPHOKINASE-RXN REACTION-LIST - RXNQT-4191 REACTION-LIST - OHMETPYRKIN-RXN REACTION-LIST - PYRIMSYN1-RXN REACTION-LIST - PYRIMSYN3-RXN REACTION-LIST - THI-P-SYN-RXN SYNONYMS - thiamin biosynthesis SYNONYMS - vitamin B1 biosynthesis SYNONYMS - thiamine biosynthesis (plants) // UNIQUE-ID - PWY0-162 TYPES - Super-Pathways TYPES - Pyrimidine-De-Novo-Biosyn COMMON-NAME - pyrimidine ribonucleotides de novo biosynthesis CREDITS - |caspi| CREDITS - SRI CREDITS - |arnaud| PATHWAY-LINKS - (PRPP (|FRPP-Biosynthesis| . :INCOMING)) PATHWAY-LINKS - (CARBAMOYL-P ARGININE-SYN) PREDECESSORS - (UMPKI-RXN OROTPDECARB-RXN) PREDECESSORS - PWY-5687 PREDECESSORS - PWY-5686 REACTION-LAYOUT - (PWY-5687 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (PWY-5686 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LIST - PWY-5687 REACTION-LIST - PWY-5686 SUB-PATHWAYS - PWY-5687 SUB-PATHWAYS - PWY-5686 SYNONYMS - pyrimidine biosynthesis // UNIQUE-ID - PWY-5121 TYPES - DITERPENOID-SYN TYPES - GGPP-Biosynthesis TYPES - Super-Pathways COMMON-NAME - superpathway of geranylgeranyldiphosphate biosynthesis II (via MEP) CREDITS - SRI CREDITS - |caspi| CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |tissier| PATHWAY-LINKS - (GERANYLGERANYL-PP PWY-5660 PWY-5416 PWY-5063 PWY-2981 PWY-5032 CAROTENOID-PWY) PREDECESSORS - (FARNESYLTRANSTRANSFERASE-RXN FPPSYN-RXN) PREDECESSORS - PWY-5120 PREDECESSORS - PWY-5123 PREDECESSORS - NONMEVIPP-PWY REACTION-LAYOUT - (PWY-5120 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (PWY-5123 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (NONMEVIPP-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LIST - PWY-5120 REACTION-LIST - PWY-5123 REACTION-LIST - NONMEVIPP-PWY SUB-PATHWAYS - PWY-5120 SUB-PATHWAYS - PWY-5123 SUB-PATHWAYS - NONMEVIPP-PWY SYNONYMS - GGPP biosynthesis II (plastidic) // UNIQUE-ID - PWY-5918 TYPES - HEME-SYN TYPES - Super-Pathways COMMON-NAME - heme biosynthesis I CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (GLT (GLUTAMATE-SYN . :INCOMING)) PATHWAY-LINKS - (PROTOHEME RXN-8073 HEMEOSYN-RXN) PREDECESSORS - (UROGENDECARBOX-RXN UROGENIIISYN-RXN) PREDECESSORS - HEME-BIOSYNTHESIS-II PREDECESSORS - PWY-5188 PRIMARIES - (GLURS-RXN (GLT) (|Charged-GLT-tRNAs|)) PRIMARIES - (GLUTRNAREDUCT-RXN NIL (GLUTAMATE-1-SEMIALDEHYDE)) REACTION-LAYOUT - (HEME-BIOSYNTHESIS-II (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (PWY-5188 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LIST - HEME-BIOSYNTHESIS-II REACTION-LIST - PWY-5188 SUB-PATHWAYS - HEME-BIOSYNTHESIS-II SUB-PATHWAYS - PWY-5188 // UNIQUE-ID - THRESYN-PWY TYPES - THREONINE-BIOSYNTHESIS TYPES - Super-Pathways COMMON-NAME - threonine biosynthesis CREDITS - O-18 CREDITS - |riley| CREDITS - SRI CREDITS - |shearer| PREDECESSORS - (ASPARTATEKIN-RXN ASPAMINOTRANS-RXN) PREDECESSORS - ASPARTATESYN-PWY PREDECESSORS - HOMOSER-THRESYN-PWY PREDECESSORS - HOMOSERSYN-PWY PREDECESSORS - (HOMOSERKIN-RXN HOMOSERDEHYDROG-RXN) REACTION-LAYOUT - (ASPARTATESYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (HOMOSER-THRESYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (HOMOSERSYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LIST - ASPARTATESYN-PWY REACTION-LIST - HOMOSER-THRESYN-PWY REACTION-LIST - HOMOSERSYN-PWY SUB-PATHWAYS - ASPARTATESYN-PWY SUB-PATHWAYS - HOMOSER-THRESYN-PWY SUB-PATHWAYS - HOMOSERSYN-PWY // UNIQUE-ID - PWY2OL-4 TYPES - Super-Pathways TYPES - Linalool-Biosynthesis TYPES - Energy-Metabolism COMMON-NAME - linalool biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - O-27 CREDITS - |pujar| PATHWAY-LINKS - (FARNESYL-PP (NONMEVIPP-PWY . :INCOMING)) PREDECESSORS - (4.2.3.25-RXN FPPSYN-RXN) PREDECESSORS - (4.2.3.26-RXN FPPSYN-RXN) REACTION-LAYOUT - (4.2.3.25-RXN (:LEFT-PRIMARIES GERANYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8997)) REACTION-LAYOUT - (4.2.3.26-RXN (:LEFT-PRIMARIES GERANYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8996)) REACTION-LAYOUT - (FPPSYN-RXN (:LEFT-PRIMARIES DELTA3-ISOPENTENYL-PP GERANYL-PP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES FARNESYL-PP)) REACTION-LIST - 4.2.3.25-RXN REACTION-LIST - 4.2.3.26-RXN REACTION-LIST - FPPSYN-RXN // UNIQUE-ID - PWY-4221 TYPES - CoA-Biosynthesis TYPES - Super-Pathways COMMON-NAME - pantothenate and coenzymeA biosynthesis II PREDECESSORS - (PANTOATE-BETA-ALANINE-LIG-RXN 2.6.1.18-RXN) PREDECESSORS - PWY-3941 PREDECESSORS - (PANTOTHENATE-KIN-RXN PANTOATE-BETA-ALANINE-LIG-RXN) PREDECESSORS - COA-PWY PREDECESSORS - PANTO-PWY REACTION-LAYOUT - (PWY-3941 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (PANTO-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (COA-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LIST - PWY-3941 REACTION-LIST - PANTO-PWY REACTION-LIST - COA-PWY SUB-PATHWAYS - PWY-3941 SUB-PATHWAYS - PANTO-PWY SUB-PATHWAYS - COA-PWY // UNIQUE-ID - ARO-PWY TYPES - Chorismate-Biosynthesis TYPES - Super-Pathways COMMON-NAME - chorismate biosynthesis I CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |caspi| CREDITS - O0-3 CREDITS - |ingraham| PATHWAY-LINKS - (ERYTHROSE-4P NONOXIPENT-PWY) PATHWAY-LINKS - (CHORISMATE PWY-3462 TRPSYN-PWY FOLSYN-PWY PWY-5791) PREDECESSORS - (CHORISMATE-SYNTHASE-RXN 2.5.1.19-RXN) PREDECESSORS - (2.5.1.19-RXN SHIKIMATE-KINASE-RXN) PREDECESSORS - (SHIKIMATE-KINASE-RXN SHIKIMATE-5-DEHYDROGENASE-RXN) PREDECESSORS - (SHIKIMATE-5-DEHYDROGENASE-RXN 3-DEHYDROQUINATE-DEHYDRATASE-RXN) PREDECESSORS - (3-DEHYDROQUINATE-DEHYDRATASE-RXN 3-DEHYDROQUINATE-SYNTHASE-RXN) PREDECESSORS - (3-DEHYDROQUINATE-SYNTHASE-RXN DAHPSYN-RXN) PREDECESSORS - (DAHPSYN-RXN) PREDECESSORS - (SHIKIMATE-KINASE-RXN RXN-7968) PREDECESSORS - (RXN-7968 3-DEHYDROQUINATE-DEHYDRATASE-RXN) REACTION-LAYOUT - (RXN-7968 (:LEFT-PRIMARIES SHIKIMATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 3-DEHYDRO-SHIKIMATE)) REACTION-LAYOUT - (DAHPSYN-RXN (:LEFT-PRIMARIES ERYTHROSE-4P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-DEOXY-D-ARABINO-HEPTULOSONATE-7-P)) REACTION-LAYOUT - (3-DEHYDROQUINATE-SYNTHASE-RXN (:LEFT-PRIMARIES 3-DEOXY-D-ARABINO-HEPTULOSONATE-7-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DEHYDROQUINATE)) REACTION-LAYOUT - (3-DEHYDROQUINATE-DEHYDRATASE-RXN (:LEFT-PRIMARIES DEHYDROQUINATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-DEHYDRO-SHIKIMATE)) REACTION-LAYOUT - (SHIKIMATE-5-DEHYDROGENASE-RXN (:LEFT-PRIMARIES SHIKIMATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 3-DEHYDRO-SHIKIMATE)) REACTION-LAYOUT - (SHIKIMATE-KINASE-RXN (:LEFT-PRIMARIES SHIKIMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SHIKIMATE-5P)) REACTION-LAYOUT - (2.5.1.19-RXN (:LEFT-PRIMARIES SHIKIMATE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-ENOLPYRUVYL-SHIKIMATE-5P)) REACTION-LAYOUT - (CHORISMATE-SYNTHASE-RXN (:LEFT-PRIMARIES 3-ENOLPYRUVYL-SHIKIMATE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CHORISMATE)) REACTION-LIST - RXN-7968 REACTION-LIST - DAHPSYN-RXN REACTION-LIST - 3-DEHYDROQUINATE-SYNTHASE-RXN REACTION-LIST - 3-DEHYDROQUINATE-DEHYDRATASE-RXN REACTION-LIST - SHIKIMATE-5-DEHYDROGENASE-RXN REACTION-LIST - SHIKIMATE-KINASE-RXN REACTION-LIST - 2.5.1.19-RXN REACTION-LIST - CHORISMATE-SYNTHASE-RXN SYNONYMS - aromatic amino acid biosynthesis SYNONYMS - shikimate pathway // UNIQUE-ID - PWY-5043 TYPES - Purine-Nucleotides-Salvage TYPES - Super-Pathways COMMON-NAME - salvage pathways of purine nucleosides II (plant) CITATIONS - :EV-COMP-AINF:3497824356:liya PATHWAY-LINKS - (XANTHINE PWY-5044) PREDECESSORS - (RXN-7607 INOSINEKIN-RXN) PREDECESSORS - (INOSINEKIN-RXN RXN-7607) PREDECESSORS - (ADENOSINE-KINASE-RXN AMP-DEPHOSPHORYLATION-RXN) PREDECESSORS - (ADENOSINE-NUCLEOSIDASE-RXN AMP-DEPHOSPHORYLATION-RXN) PREDECESSORS - (AMP-DEPHOSPHORYLATION-RXN ADENOSINE-KINASE-RXN) PREDECESSORS - (RXN0-363 XMPXAN-RXN) PREDECESSORS - (XMPXAN-RXN IMP-DEHYDROG-RXN) PREDECESSORS - (IMP-DEHYDROG-RXN AMP-DEAMINASE-RXN) PREDECESSORS - (AMP-DEAMINASE-RXN ADENPRIBOSYLTRAN-RXN) PREDECESSORS - (ADENPRIBOSYLTRAN-RXN ADENOSINE-NUCLEOSIDASE-RXN) PREDECESSORS - (AMP-DEAMINASE-RXN ADENOSINE-KINASE-RXN) PREDECESSORS - (INOSINE-NUCLEOSIDASE-RXN RXN-7607) PREDECESSORS - (RXN-7607 AMP-DEAMINASE-RXN) PREDECESSORS - (RXN-7609 GUANPRIBOSYLTRAN-RXN) PREDECESSORS - (GUANOSINE-DEAMINASE-RXN RXN-7609) PREDECESSORS - (RXN0-366 RXN-7609) PREDECESSORS - (GUANPRIBOSYLTRAN-RXN RXN0-366) PREDECESSORS - (RXN-7609 GMP-SYN-NH3-RXN) PREDECESSORS - (GUANOSINEKIN-RXN RXN-7609) PREDECESSORS - (RXN-7609 GUANOSINEKIN-RXN) PREDECESSORS - (GUANINE-DEAMINASE-RXN RXN0-366) PREDECESSORS - (RXN-7682 INOSINE-NUCLEOSIDASE-RXN) PREDECESSORS - (HYPOXANPRIBOSYLTRAN-RXN INOSINE-NUCLEOSIDASE-RXN) PREDECESSORS - (RXN-7607 HYPOXANPRIBOSYLTRAN-RXN) PRIMARIES - (INOSINEKIN-RXN (INOSINE) (IMP)) PRIMARIES - (HYPOXANPRIBOSYLTRAN-RXN (HYPOXANTHINE) (IMP)) PRIMARIES - (AMP-DEPHOSPHORYLATION-RXN (AMP) (ADENOSINE)) PRIMARIES - (RXN-7682 (HYPOXANTHINE) (XANTHINE)) PRIMARIES - (RXN0-366 (GUANOSINE) (GUANINE)) PRIMARIES - (RXN-7609 (GMP) (GUANOSINE)) PRIMARIES - (GUANPRIBOSYLTRAN-RXN (GUANINE) (GMP)) PRIMARIES - (GUANOSINEKIN-RXN (GUANOSINE) (GMP)) PRIMARIES - (GUANOSINE-DEAMINASE-RXN (GUANOSINE) (XANTHOSINE)) PRIMARIES - (GUANINE-DEAMINASE-RXN (GUANINE) (XANTHINE)) PRIMARIES - (GMP-SYN-NH3-RXN (XANTHOSINE-5-PHOSPHATE) (GMP)) PRIMARIES - (XMPXAN-RXN (XANTHOSINE-5-PHOSPHATE) (XANTHOSINE)) PRIMARIES - (RXN0-363 (XANTHOSINE) (XANTHINE)) PRIMARIES - (RXN-7607 (IMP) (INOSINE)) PRIMARIES - (INOSINE-NUCLEOSIDASE-RXN (INOSINE) (HYPOXANTHINE)) PRIMARIES - (IMP-DEHYDROG-RXN (IMP) (XANTHOSINE-5-PHOSPHATE)) PRIMARIES - (AMP-DEAMINASE-RXN (AMP) (IMP)) PRIMARIES - (ADENPRIBOSYLTRAN-RXN (ADENINE) (AMP)) PRIMARIES - (ADENOSINE-NUCLEOSIDASE-RXN (ADENOSINE) (ADENINE)) PRIMARIES - (ADENOSINE-KINASE-RXN (ADENOSINE) (AMP)) REACTION-LAYOUT - (INOSINEKIN-RXN (:LEFT-PRIMARIES INOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES IMP)) REACTION-LAYOUT - (HYPOXANPRIBOSYLTRAN-RXN (:LEFT-PRIMARIES IMP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES HYPOXANTHINE)) REACTION-LAYOUT - (AMP-DEPHOSPHORYLATION-RXN (:LEFT-PRIMARIES AMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ADENOSINE)) REACTION-LAYOUT - (RXN-7682 (:LEFT-PRIMARIES HYPOXANTHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHINE)) REACTION-LAYOUT - (GUANPRIBOSYLTRAN-RXN (:LEFT-PRIMARIES GUANINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GMP)) REACTION-LAYOUT - (GMP-SYN-NH3-RXN (:LEFT-PRIMARIES XANTHOSINE-5-PHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GMP AMP)) REACTION-LAYOUT - (RXN0-366 (:LEFT-PRIMARIES GUANOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GUANINE)) REACTION-LAYOUT - (GUANOSINEKIN-RXN (:LEFT-PRIMARIES GUANOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GMP)) REACTION-LAYOUT - (GUANINE-DEAMINASE-RXN (:LEFT-PRIMARIES GUANINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHINE)) REACTION-LAYOUT - (GUANOSINE-DEAMINASE-RXN (:LEFT-PRIMARIES GUANOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHOSINE)) REACTION-LAYOUT - (RXN-7609 (:LEFT-PRIMARIES GMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GUANOSINE)) REACTION-LAYOUT - (RXN0-363 (:LEFT-PRIMARIES XANTHOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHINE)) REACTION-LAYOUT - (XMPXAN-RXN (:LEFT-PRIMARIES XANTHOSINE-5-PHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHOSINE)) REACTION-LAYOUT - (INOSINE-NUCLEOSIDASE-RXN (:LEFT-PRIMARIES INOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HYPOXANTHINE)) REACTION-LAYOUT - (RXN-7607 (:LEFT-PRIMARIES IMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INOSINE)) REACTION-LAYOUT - (IMP-DEHYDROG-RXN (:LEFT-PRIMARIES IMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHOSINE-5-PHOSPHATE)) REACTION-LAYOUT - (ADENOSINE-KINASE-RXN (:LEFT-PRIMARIES ADENOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AMP)) REACTION-LAYOUT - (AMP-DEAMINASE-RXN (:LEFT-PRIMARIES AMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES IMP)) REACTION-LAYOUT - (ADENPRIBOSYLTRAN-RXN (:LEFT-PRIMARIES AMP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES ADENINE)) REACTION-LAYOUT - (ADENOSINE-NUCLEOSIDASE-RXN (:LEFT-PRIMARIES ADENOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ADENINE)) REACTION-LIST - INOSINEKIN-RXN REACTION-LIST - HYPOXANPRIBOSYLTRAN-RXN REACTION-LIST - AMP-DEPHOSPHORYLATION-RXN REACTION-LIST - RXN-7682 REACTION-LIST - GUANPRIBOSYLTRAN-RXN REACTION-LIST - GMP-SYN-NH3-RXN REACTION-LIST - RXN0-366 REACTION-LIST - GUANOSINEKIN-RXN REACTION-LIST - GUANINE-DEAMINASE-RXN REACTION-LIST - GUANOSINE-DEAMINASE-RXN REACTION-LIST - RXN-7609 REACTION-LIST - RXN0-363 REACTION-LIST - XMPXAN-RXN REACTION-LIST - INOSINE-NUCLEOSIDASE-RXN REACTION-LIST - RXN-7607 REACTION-LIST - IMP-DEHYDROG-RXN REACTION-LIST - ADENOSINE-KINASE-RXN REACTION-LIST - AMP-DEAMINASE-RXN REACTION-LIST - ADENPRIBOSYLTRAN-RXN REACTION-LIST - ADENOSINE-NUCLEOSIDASE-RXN SYNONYMS - purine recycle pathways // UNIQUE-ID - PWY0-845 TYPES - Vitamin-B6-Biosynthesis TYPES - Super-Pathways COMMON-NAME - superpathway of pyridoxal 5'-phosphate biosynthesis and salvage PREDECESSORS - PYRIDOXSYN-PWY PREDECESSORS - PLPSAL-PWY REACTION-LAYOUT - (PYRIDOXSYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (PLPSAL-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LIST - PYRIDOXSYN-PWY REACTION-LIST - PLPSAL-PWY SUB-PATHWAYS - PYRIDOXSYN-PWY SUB-PATHWAYS - PLPSAL-PWY SYNONYMS - vitamin B6 biosynthesis and salvage // UNIQUE-ID - FOLSYN-PWY TYPES - Folate-Biosynthesis TYPES - Super-Pathways COMMON-NAME - tetrahydrofolate biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - SRI CREDITS - |caspi| CREDITS - O-18 CREDITS - |riley| PATHWAY-LINKS - (CHORISMATE ARO-PWY) PATHWAY-LINKS - (THF PWY-2201 PWY-2161) PREDECESSORS - (GTP-CYCLOHYDRO-I-RXN) PREDECESSORS - (H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN GTP-CYCLOHYDRO-I-RXN) PREDECESSORS - (DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN) PREDECESSORS - (H2NEOPTERINALDOL-RXN DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN) PREDECESSORS - (H2PTERIDINEPYROPHOSPHOKIN-RXN H2NEOPTERINALDOL-RXN) PREDECESSORS - (H2PTEROATESYNTH-RXN H2PTERIDINEPYROPHOSPHOKIN-RXN) PREDECESSORS - (DIHYDROFOLATESYNTH-RXN H2PTEROATESYNTH-RXN) PREDECESSORS - (DIHYDROFOLATEREDUCT-RXN DIHYDROFOLATESYNTH-RXN) PREDECESSORS - (PABASYN-RXN) PREDECESSORS - (ADCLY-RXN PABASYN-RXN) PREDECESSORS - (H2PTEROATESYNTH-RXN ADCLY-RXN) PREDECESSORS - (METHENYLTHFCYCLOHYDRO-RXN) PREDECESSORS - (GART-RXN METHENYLTHFCYCLOHYDRO-RXN) PRIMARIES - (GART-RXN (10-FORMYL-THF) (THF)) REACTION-LAYOUT - (GART-RXN (:LEFT-PRIMARIES 10-FORMYL-THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES THF)) REACTION-LAYOUT - (GTP-CYCLOHYDRO-I-RXN (:LEFT-PRIMARIES GTP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDRONEOPTERIN-P3)) REACTION-LAYOUT - (H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN (:LEFT-PRIMARIES DIHYDRONEOPTERIN-P3) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDRONEOPTERIN-P)) REACTION-LAYOUT - (DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN (:LEFT-PRIMARIES DIHYDRONEOPTERIN-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDRO-NEO-PTERIN)) REACTION-LAYOUT - (H2NEOPTERINALDOL-RXN (:LEFT-PRIMARIES DIHYDRO-NEO-PTERIN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AMINO-OH-HYDROXYMETHYL-DIHYDROPTERIDINE)) REACTION-LAYOUT - (H2PTERIDINEPYROPHOSPHOKIN-RXN (:LEFT-PRIMARIES AMINO-OH-HYDROXYMETHYL-DIHYDROPTERIDINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROPTERIN-CH2OH-PP)) REACTION-LAYOUT - (DIHYDROFOLATEREDUCT-RXN (:LEFT-PRIMARIES THF) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DIHYDROFOLATE)) REACTION-LAYOUT - (DIHYDROFOLATESYNTH-RXN (:LEFT-PRIMARIES 7-8-DIHYDROPTEROATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROFOLATE)) REACTION-LAYOUT - (METHENYLTHFCYCLOHYDRO-RXN (:LEFT-PRIMARIES 5-10-METHENYL-THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 10-FORMYL-THF)) REACTION-LAYOUT - (PABASYN-RXN (:LEFT-PRIMARIES CHORISMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 4-AMINO-4-DEOXYCHORISMATE)) REACTION-LAYOUT - (H2PTEROATESYNTH-RXN (:LEFT-PRIMARIES DIHYDROPTERIN-CH2OH-PP P-AMINO-BENZOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 7-8-DIHYDROPTEROATE)) REACTION-LAYOUT - (ADCLY-RXN (:LEFT-PRIMARIES 4-AMINO-4-DEOXYCHORISMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES P-AMINO-BENZOATE)) REACTION-LIST - GART-RXN REACTION-LIST - GTP-CYCLOHYDRO-I-RXN REACTION-LIST - H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN REACTION-LIST - DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN REACTION-LIST - H2NEOPTERINALDOL-RXN REACTION-LIST - H2PTERIDINEPYROPHOSPHOKIN-RXN REACTION-LIST - DIHYDROFOLATEREDUCT-RXN REACTION-LIST - DIHYDROFOLATESYNTH-RXN REACTION-LIST - METHENYLTHFCYCLOHYDRO-RXN REACTION-LIST - PABASYN-RXN REACTION-LIST - H2PTEROATESYNTH-RXN REACTION-LIST - ADCLY-RXN SYNONYMS - folic acid biosynthesis SYNONYMS - folate biosynthesis // UNIQUE-ID - PHOTOALL-PWY TYPES - Photosynthesis TYPES - Super-Pathways COMMON-NAME - oxygenic photosynthesis CREDITS - O-18 CREDITS - |pellegrini-toole| PREDECESSORS - PWY-101 PREDECESSORS - CALVIN-PWY PRIMARIES - (GAPDHSYNEC-RXN (NADH-P-OR-NOP DPG) (GAP)) PRIMARIES - (PSII-RXN (WATER) (E- OXYGEN-MOLECULE)) PRIMARIES - (PSI-RXN (E- NADP) NIL) REACTION-LAYOUT - (CALVIN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (PWY-101 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LIST - CALVIN-PWY REACTION-LIST - PWY-101 SUB-PATHWAYS - CALVIN-PWY SUB-PATHWAYS - PWY-101 // UNIQUE-ID - PWY-2541 TYPES - TRITERPENOID-SYN TYPES - Super-Pathways TYPES - Sterol-Biosynthesis COMMON-NAME - plant sterol biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |tissier| PATHWAY-LINKS - (FARNESYL-PP PWY-5123) PATHWAY-LINKS - (CPD-707 PWY-2582 PWY-699) PREDECESSORS - (CYCLOARTENOL-SYNTHASE-RXN SQUALENE-MONOOXYGENASE-RXN) PREDECESSORS - PWY-5670 PREDECESSORS - (RXN-8353 RXN-4222) PREDECESSORS - (2.1.1.143-RXN RXN-4161) PREDECESSORS - (RXN-4208 2.1.1.143-RXN) PREDECESSORS - (RXN-4224 RXN-4221) PREDECESSORS - (RXN-4222 RXN-707) PREDECESSORS - (RXN-708 RXN-4222) PREDECESSORS - (RXN-4210 RXN-4209) PREDECESSORS - (RXN-707 RXN-706) PREDECESSORS - (RXN-706 RXN-4181) PREDECESSORS - (RXN-4144 1.14.13.70-RXN) PREDECESSORS - (RXN-4021 CYCLOARTENOL-SYNTHASE-RXN) PREDECESSORS - (RXN-4101 RXN-4021) PREDECESSORS - (CYCLOEUCALENOL-CYCLOISOMERASE-RXN RXN-4101) PREDECESSORS - (1.14.13.70-RXN CYCLOEUCALENOL-CYCLOISOMERASE-RXN) PREDECESSORS - (RXN-4161 RXN-4144) PREDECESSORS - (RXN-4181 RXN-4161) PREDECESSORS - (RXN-4209 RXN-4208) PREDECESSORS - (RXN-4221 RXN-4210) PREDECESSORS - (RXN-4242 RXN-708) PREDECESSORS - (RXN-4243 RXN-4224) PREDECESSORS - (RXN-8352 RXN-8353) PRIMARIES - (RXN-8352 (CPD-8134) (CPD-4161)) PRIMARIES - (RXN-8353 (CPD-4141) (CPD-8134)) PRIMARIES - (2.1.1.143-RXN (CPD-4101) (CPD-4124)) REACTION-LAYOUT - (PWY-5670 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (RXN-8352 (:LEFT-PRIMARIES CPD-8134) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4161)) REACTION-LAYOUT - (RXN-8353 (:LEFT-PRIMARIES CPD-4141) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8134)) REACTION-LAYOUT - (2.1.1.143-RXN (:LEFT-PRIMARIES CPD-4101) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4124)) REACTION-LAYOUT - (RXN-4243 (:LEFT-PRIMARIES CPD-4143) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4162)) REACTION-LAYOUT - (RXN-4242 (:LEFT-PRIMARIES CPD-707) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8135)) REACTION-LAYOUT - (RXN-4224 (:LEFT-PRIMARIES CPD-4142) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4143)) REACTION-LAYOUT - (RXN-4221 (:LEFT-PRIMARIES CPD-4127) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4142)) REACTION-LAYOUT - (RXN-4222 (:LEFT-PRIMARIES CPD-706) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4141)) REACTION-LAYOUT - (RXN-4210 (:LEFT-PRIMARIES CPD-4126) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4127)) REACTION-LAYOUT - (RXN-4209 (:LEFT-PRIMARIES CPD-4125) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4126)) REACTION-LAYOUT - (RXN-4208 (:LEFT-PRIMARIES CPD-4124) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4125)) REACTION-LAYOUT - (RXN-708 (:LEFT-PRIMARIES CPD-4141) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-707)) REACTION-LAYOUT - (RXN-707 (:LEFT-PRIMARIES CPD-700) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-706)) REACTION-LAYOUT - (RXN-706 (:LEFT-PRIMARIES EPISTEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-700)) REACTION-LAYOUT - (RXN-4181 (:LEFT-PRIMARIES CPD-4101) (:DIRECTION :L2R) (:RIGHT-PRIMARIES EPISTEROL)) REACTION-LAYOUT - (RXN-4161 (:LEFT-PRIMARIES CPD-4081) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4101)) REACTION-LAYOUT - (RXN-4144 (:LEFT-PRIMARIES ALPHA-METHYL-5-ALPHA-ERGOSTA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4081)) REACTION-LAYOUT - (1.14.13.70-RXN (:LEFT-PRIMARIES OBTUSIFOLIOL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALPHA-METHYL-5-ALPHA-ERGOSTA)) REACTION-LAYOUT - (CYCLOEUCALENOL-CYCLOISOMERASE-RXN (:LEFT-PRIMARIES CYCLOEUCALENOL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OBTUSIFOLIOL)) REACTION-LAYOUT - (RXN-4101 (:LEFT-PRIMARIES CPD-696) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CYCLOEUCALENOL)) REACTION-LAYOUT - (RXN-4021 (:LEFT-PRIMARIES CYCLOARTENOL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-696)) REACTION-LAYOUT - (CYCLOARTENOL-SYNTHASE-RXN (:LEFT-PRIMARIES EPOXYSQUALENE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CYCLOARTENOL)) REACTION-LIST - PWY-5670 REACTION-LIST - RXN-8352 REACTION-LIST - RXN-8353 REACTION-LIST - 2.1.1.143-RXN REACTION-LIST - RXN-4243 REACTION-LIST - RXN-4242 REACTION-LIST - RXN-4224 REACTION-LIST - RXN-4221 REACTION-LIST - RXN-4222 REACTION-LIST - RXN-4210 REACTION-LIST - RXN-4209 REACTION-LIST - RXN-4208 REACTION-LIST - RXN-708 REACTION-LIST - RXN-707 REACTION-LIST - RXN-706 REACTION-LIST - RXN-4181 REACTION-LIST - RXN-4161 REACTION-LIST - RXN-4144 REACTION-LIST - 1.14.13.70-RXN REACTION-LIST - CYCLOEUCALENOL-CYCLOISOMERASE-RXN REACTION-LIST - RXN-4101 REACTION-LIST - RXN-4021 REACTION-LIST - CYCLOARTENOL-SYNTHASE-RXN SUB-PATHWAYS - PWY-5670 // UNIQUE-ID - PWY-5942 TYPES - Lycopene-Biosynthesis TYPES - Super-Pathways COMMON-NAME - trans-lycopene biosynthesis CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (GERANYLGERANYL-PP PWY-5120) PREDECESSORS - (1.14.99.30-RXN RXN-8022) PREDECESSORS - PWY-6287 PRIMARIES - (RXN-7979 (CPD1F-131) (CPD1F-133)) PRIMARIES - (RXN-7978 (CPD1F-130) (CPD1F-131)) PRIMARIES - (RXN-7985 (CPD1F-131) (CPD1F-130)) PRIMARIES - (RXN-8026 (CPD-7409) (CPD1F-130)) PRIMARIES - (RXN-8025 (CPD1F-129) (CPD-7409)) PRIMARIES - (RXN-8024 (CPD-7408) (CPD1F-98)) PRIMARIES - (RXN-8023 (PHYTOENE) (CPD-7408)) PRIMARIES - (RXN-8002 (CPD-464) (PHYTOENE)) PRIMARIES - (2.5.1.32-RXN (GERANYLGERANYL-PP) (CPD-464)) PRIMARIES - (1.14.99.30-RXN (NEUROSPORENE) (CPD1F-114)) PRIMARIES - (RXN-8022 (CPD1F-98) (NEUROSPORENE)) PRIMARIES - (FARNESYLTRANSTRANSFERASE-RXN (FARNESYL-PP DELTA3-ISOPENTENYL-PP) (GERANYLGERANYL-PP)) PRIMARIES - (RXN-5962 (CPD-5661) (CPD1F-119)) PRIMARIES - (RXN-5961 (CPD1F-118) (CPD-5661)) REACTION-LAYOUT - (PWY-6287 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (1.14.99.30-RXN (:LEFT-PRIMARIES NEUROSPORENE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-114)) REACTION-LIST - PWY-6287 REACTION-LIST - 1.14.99.30-RXN SUB-PATHWAYS - PWY-6287 // UNIQUE-ID - PWY-3001 TYPES - ISOLEUCINE-SYN TYPES - Super-Pathways COMMON-NAME - isoleucine biosynthesis I CREDITS - SRI CREDITS - |caspi| KEY-REACTIONS - THREDEHYD-RXN PREDECESSORS - (THREDEHYD-RXN THRESYN-RXN) PREDECESSORS - (HOMOSERKIN-RXN HOMOSERDEHYDROG-RXN) PREDECESSORS - (ASPARTATEKIN-RXN ASPAMINOTRANS-RXN) PREDECESSORS - ASPARTATESYN-PWY PREDECESSORS - HOMOSERSYN-PWY PREDECESSORS - HOMOSER-THRESYN-PWY PREDECESSORS - ILEUSYN-PWY REACTION-LAYOUT - (ILEUSYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (HOMOSER-THRESYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (HOMOSERSYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (ASPARTATESYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LIST - ILEUSYN-PWY REACTION-LIST - HOMOSER-THRESYN-PWY REACTION-LIST - HOMOSERSYN-PWY REACTION-LIST - ASPARTATESYN-PWY SUB-PATHWAYS - ILEUSYN-PWY SUB-PATHWAYS - HOMOSER-THRESYN-PWY SUB-PATHWAYS - HOMOSERSYN-PWY SUB-PATHWAYS - ASPARTATESYN-PWY SYNONYMS - superpathway of isoleucine biosynthesis // UNIQUE-ID - PWY-5044 TYPES - Purine-Degradation TYPES - Super-Pathways COMMON-NAME - purine degradation I (aerobic) CITATIONS - :EV-COMP-AINF:3497824356:liya PATHWAY-LINKS - (URATE PWY-5691) PATHWAY-LINKS - (XANTHINE (PWY-5043 . :INCOMING)) PREDECESSORS - (RXN0-363 GUANOSINE-DEAMINASE-RXN) PREDECESSORS - (GUANINE-DEAMINASE-RXN RXN0-366) PREDECESSORS - (RXN0-366 RXN-7609) PREDECESSORS - (GUANOSINE-DEAMINASE-RXN RXN-7609) PREDECESSORS - (RXN-7609) PREDECESSORS - (RXN0-363 XMPXAN-RXN) PREDECESSORS - (IMP-DEHYDROG-RXN AMP-DEAMINASE-RXN) PREDECESSORS - (XMPXAN-RXN IMP-DEHYDROG-RXN) PREDECESSORS - (INOSINE-NUCLEOSIDASE-RXN RXN-7607) PREDECESSORS - (RXN-7682 INOSINE-NUCLEOSIDASE-RXN) PREDECESSORS - (RXN-7607 AMP-DEAMINASE-RXN) PREDECESSORS - (RXN0-901 RXN0-363) PREDECESSORS - (RXN0-901 GUANINE-DEAMINASE-RXN) PREDECESSORS - (RXN0-901 RXN-7682) PRIMARIES - (RXN-7610 (URATE) (ALLANTOIN)) PRIMARIES - (RXN0-901 (XANTHINE) (URATE)) PRIMARIES - (RXN0-366 (GUANOSINE) (GUANINE)) PRIMARIES - (RXN0-363 (XANTHOSINE) (XANTHINE)) PRIMARIES - (GUANOSINE-DEAMINASE-RXN (GUANOSINE) (XANTHOSINE)) PRIMARIES - (RXN-7609 (GMP) (GUANOSINE)) PRIMARIES - (RXN-7682 (HYPOXANTHINE) (XANTHINE)) PRIMARIES - (INOSINE-NUCLEOSIDASE-RXN (INOSINE) (HYPOXANTHINE)) PRIMARIES - (RXN-7607 (IMP) (INOSINE)) PRIMARIES - (GUANINE-DEAMINASE-RXN (GUANINE) (XANTHINE)) PRIMARIES - (XMPXAN-RXN (XANTHOSINE-5-PHOSPHATE) (XANTHOSINE)) PRIMARIES - (IMP-DEHYDROG-RXN (IMP) (XANTHOSINE-5-PHOSPHATE)) PRIMARIES - (AMP-DEAMINASE-RXN (AMP) (IMP)) PRIMARIES - (ADENPRIBOSYLTRAN-RXN (ADENINE) (AMP)) PRIMARIES - (XANTHINE-DEHYDROGENASE-RXN (XANTHINE) (URATE)) REACTION-LAYOUT - (RXN0-901 (:LEFT-PRIMARIES XANTHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES URATE)) REACTION-LAYOUT - (RXN0-366 (:LEFT-PRIMARIES GUANOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GUANINE)) REACTION-LAYOUT - (GUANOSINE-DEAMINASE-RXN (:LEFT-PRIMARIES GUANOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHOSINE)) REACTION-LAYOUT - (RXN-7609 (:LEFT-PRIMARIES GMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GUANOSINE)) REACTION-LAYOUT - (RXN0-363 (:LEFT-PRIMARIES XANTHOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHINE)) REACTION-LAYOUT - (RXN-7682 (:LEFT-PRIMARIES HYPOXANTHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHINE)) REACTION-LAYOUT - (INOSINE-NUCLEOSIDASE-RXN (:LEFT-PRIMARIES INOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HYPOXANTHINE)) REACTION-LAYOUT - (RXN-7607 (:LEFT-PRIMARIES IMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INOSINE)) REACTION-LAYOUT - (GUANINE-DEAMINASE-RXN (:LEFT-PRIMARIES GUANINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHINE)) REACTION-LAYOUT - (XMPXAN-RXN (:LEFT-PRIMARIES XANTHOSINE-5-PHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHOSINE)) REACTION-LAYOUT - (IMP-DEHYDROG-RXN (:LEFT-PRIMARIES IMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHOSINE-5-PHOSPHATE)) REACTION-LAYOUT - (AMP-DEAMINASE-RXN (:LEFT-PRIMARIES AMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES IMP)) REACTION-LIST - RXN0-901 REACTION-LIST - RXN0-366 REACTION-LIST - GUANOSINE-DEAMINASE-RXN REACTION-LIST - RXN-7609 REACTION-LIST - RXN0-363 REACTION-LIST - RXN-7682 REACTION-LIST - INOSINE-NUCLEOSIDASE-RXN REACTION-LIST - RXN-7607 REACTION-LIST - GUANINE-DEAMINASE-RXN REACTION-LIST - XMPXAN-RXN REACTION-LIST - IMP-DEHYDROG-RXN REACTION-LIST - AMP-DEAMINASE-RXN SYNONYMS - purine catabolism SYNONYMS - purine nucleotide degradation SYNONYMS - purine nucleotide catabolism // UNIQUE-ID - PWY-5173 TYPES - Super-Pathways TYPES - Acetyl-CoA-Biosynthesis COMMON-NAME - superpathway of acetyl-CoA biosynthesis PATHWAY-LINKS - (CIT TCA) PATHWAY-LINKS - (PYRUVATE (CALVIN-PWY . :INCOMING) PWY-1042) PREDECESSORS - PWY-5172 PREDECESSORS - PYRUVDEHYD-PWY REACTION-LAYOUT - (PWY-5172 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (PYRUVDEHYD-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LIST - PWY-5172 REACTION-LIST - PYRUVDEHYD-PWY SUB-PATHWAYS - PWY-5172 SUB-PATHWAYS - PYRUVDEHYD-PWY // UNIQUE-ID - PEPTIDOGLYCANSYN-PWY TYPES - Peptidoglycan-Biosynthesis TYPES - Super-Pathways COMMON-NAME - peptidoglycan biosynthesis III CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - O-18 CREDITS - |riley| PREDECESSORS - (UDP-NACMUR-ALA-LIG-RXN UDPNACETYLMURAMATEDEHYDROG-RXN) PREDECESSORS - (GLUTRACE-RXN) PREDECESSORS - (UDP-NACMURALA-GLU-LIG-RXN GLUTRACE-RXN UDP-NACMUR-ALA-LIG-RXN) PREDECESSORS - (UDP-NACMURALGLDAPLIG-RXN UDP-NACMURALA-GLU-LIG-RXN) PREDECESSORS - (DALADALALIG-RXN) PREDECESSORS - (NACGLCTRANS-RXN PHOSNACMURPENTATRANS-RXN) PREDECESSORS - (UDP-NACMURALGLDAPAALIG-RXN DALADALALIG-RXN UDP-NACMURALGLDAPLIG-RXN) PREDECESSORS - (PHOSNACMURPENTATRANS-RXN UDP-NACMURALGLDAPAALIG-RXN) PREDECESSORS - (UDPNACETYLMURAMATEDEHYDROG-RXN UDPNACETYLGLUCOSAMENOLPYRTRANS-RXN) PRIMARIES - (NACGLCTRANS-RXN (C5) (C6 |NAcMur-Peptide-NAcGlc-Undecaprenols|)) REACTION-LAYOUT - (PHOSNACMURPENTATRANS-RXN (:LEFT-PRIMARIES C1) (:DIRECTION :L2R) (:RIGHT-PRIMARIES C5)) REACTION-LAYOUT - (DALADALALIG-RXN (:LEFT-PRIMARIES D-ALANINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES D-ALA-D-ALA)) REACTION-LAYOUT - (UDP-NACMURALGLDAPLIG-RXN (:LEFT-PRIMARIES UDP-AA-GLUTAMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP-AAGM-DIAMINOHEPTANEDIOATE)) REACTION-LAYOUT - (GLUTRACE-RXN (:LEFT-PRIMARIES GLT) (:DIRECTION :L2R) (:RIGHT-PRIMARIES D-GLT)) REACTION-LAYOUT - (UDP-NACMURALA-GLU-LIG-RXN (:LEFT-PRIMARIES D-GLT UDP-ACETYLMURAMOYL-ALA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP-AA-GLUTAMATE)) REACTION-LAYOUT - (UDP-NACMUR-ALA-LIG-RXN (:LEFT-PRIMARIES UDP-N-ACETYLMURAMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP-ACETYLMURAMOYL-ALA)) REACTION-LAYOUT - (UDP-NACMURALGLDAPAALIG-RXN (:LEFT-PRIMARIES D-ALA-D-ALA UDP-AAGM-DIAMINOHEPTANEDIOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES C1)) REACTION-LAYOUT - (NACGLCTRANS-RXN (:LEFT-PRIMARIES UDP-N-ACETYL-D-GLUCOSAMINE C5) (:DIRECTION :L2R) (:RIGHT-PRIMARIES C6)) REACTION-LAYOUT - (UDPNACETYLMURAMATEDEHYDROG-RXN (:LEFT-PRIMARIES UDP-N-ACETYLMURAMATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES UDP-ACETYL-CARBOXYVINYL-GLUCOSAMINE)) REACTION-LAYOUT - (UDPNACETYLGLUCOSAMENOLPYRTRANS-RXN (:LEFT-PRIMARIES UDP-N-ACETYL-D-GLUCOSAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP-ACETYL-CARBOXYVINYL-GLUCOSAMINE)) REACTION-LIST - PHOSNACMURPENTATRANS-RXN REACTION-LIST - DALADALALIG-RXN REACTION-LIST - UDP-NACMURALGLDAPLIG-RXN REACTION-LIST - GLUTRACE-RXN REACTION-LIST - UDP-NACMURALA-GLU-LIG-RXN REACTION-LIST - UDP-NACMUR-ALA-LIG-RXN REACTION-LIST - UDP-NACMURALGLDAPAALIG-RXN REACTION-LIST - NACGLCTRANS-RXN REACTION-LIST - UDPNACETYLMURAMATEDEHYDROG-RXN REACTION-LIST - UDPNACETYLGLUCOSAMENOLPYRTRANS-RXN // UNIQUE-ID - PWY-841 TYPES - Purine-Nucleotide-De-Novo-Biosynthesis TYPES - Super-Pathways COMMON-NAME - purine nucleotides de novo biosynthesis II CREDITS - O-18 CREDITS - |pellegrini-toole| CREDITS - SRI CREDITS - |fulcher| PATHWAY-LINKS - (PRPP PWY0-662 PWY0-661) PATHWAY-LINKS - (5-PHOSPHORIBOSYL-5-AMINOIMIDAZOLE THISYN-PWY) PREDECESSORS - (ADENYLOSUCCINATE-SYNTHASE-RXN IMPCYCLOHYDROLASE-RXN) PREDECESSORS - (IMP-DEHYDROG-RXN IMPCYCLOHYDROLASE-RXN) PREDECESSORS - (AIRCARBOXY-RXN AIRS-RXN) PREDECESSORS - PWY-6124 PREDECESSORS - PWY-6121 PREDECESSORS - (AMPSYN-RXN ADENYLOSUCCINATE-SYNTHASE-RXN) PREDECESSORS - (GMP-SYN-GLUT-RXN IMP-DEHYDROG-RXN) PRIMARIES - (AMPSYN-RXN (ADENYLOSUCC) (AMP)) REACTION-LAYOUT - (PWY-6124 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (PWY-6121 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (GMP-SYN-GLUT-RXN (:LEFT-PRIMARIES XANTHOSINE-5-PHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AMP GMP)) REACTION-LAYOUT - (IMP-DEHYDROG-RXN (:LEFT-PRIMARIES IMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHOSINE-5-PHOSPHATE)) REACTION-LAYOUT - (AMPSYN-RXN (:LEFT-PRIMARIES ADENYLOSUCC) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AMP)) REACTION-LAYOUT - (ADENYLOSUCCINATE-SYNTHASE-RXN (:LEFT-PRIMARIES IMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ADENYLOSUCC)) REACTION-LIST - PWY-6124 REACTION-LIST - PWY-6121 REACTION-LIST - GMP-SYN-GLUT-RXN REACTION-LIST - IMP-DEHYDROG-RXN REACTION-LIST - AMPSYN-RXN REACTION-LIST - ADENYLOSUCCINATE-SYNTHASE-RXN SUB-PATHWAYS - PWY-6124 SUB-PATHWAYS - PWY-6121 SYNONYMS - purine biosynthesis 2 // UNIQUE-ID - PWY-6151 TYPES - S-adenosyl-L-methionine-cycle TYPES - Super-Pathways COMMON-NAME - S-adenosyl-L-methionine cycle I CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |caspi| KEY-REACTIONS - RIBOSYLHOMOCYSTEINASE-RXN KEY-REACTIONS - ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN PREDECESSORS - (HOMOCYSMET-RXN RIBOSYLHOMOCYSTEINASE-RXN) PREDECESSORS - (ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN RXN-7605) PREDECESSORS - (RXN-7605 S-ADENMETSYN-RXN) PREDECESSORS - (S-ADENMETSYN-RXN) PREDECESSORS - (S-ADENMETSYN-RXN HOMOCYSMET-RXN) PREDECESSORS - SAM-PWY PREDECESSORS - (RIBOSYLHOMOCYSTEINASE-RXN ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN) PRIMARIES - (RIBOSYLHOMOCYSTEINASE-RXN (CPD-564) (DIHYDROXYPENTANEDIONE HOMO-CYS)) PRIMARIES - (HOMOCYSMET-RXN (HOMO-CYS) (MET)) PRIMARIES - (RXN-6301 (HOMO-CYS) (MET)) PRIMARIES - (RXN-7605 (S-ADENOSYLMETHIONINE) (ADENOSYL-HOMO-CYS)) PRIMARIES - (HOMOCYSMETB12-RXN (HOMO-CYS) (MET)) PRIMARIES - (ADENOSYLHOMOCYSTEINASE-RXN (ADENOSYL-HOMO-CYS) (HOMO-CYS)) PRIMARIES - (S-ADENMETSYN-RXN (MET) (S-ADENOSYLMETHIONINE)) REACTION-LAYOUT - (HOMOCYSMET-RXN (:LEFT-PRIMARIES HOMO-CYS) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MET)) REACTION-LAYOUT - (RXN-7605 (:LEFT-PRIMARIES S-ADENOSYLMETHIONINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ADENOSYL-HOMO-CYS)) REACTION-LAYOUT - (SAM-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (RIBOSYLHOMOCYSTEINASE-RXN (:LEFT-PRIMARIES CPD-564) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROXYPENTANEDIONE HOMO-CYS)) REACTION-LAYOUT - (ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN (:LEFT-PRIMARIES ADENOSYL-HOMO-CYS) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-564)) REACTION-LIST - HOMOCYSMET-RXN REACTION-LIST - RXN-7605 REACTION-LIST - SAM-PWY REACTION-LIST - RIBOSYLHOMOCYSTEINASE-RXN REACTION-LIST - ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN SUB-PATHWAYS - SAM-PWY SYNONYMS - SAM cycle SYNONYMS - activated methyl cycle SYNONYMS - AMC // UNIQUE-ID - PWY-4041 TYPES - Reductants TYPES - Super-Pathways COMMON-NAME - γ-glutamyl cycle CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - SRI CREDITS - |caspi| PREDECESSORS - (GLUTCYSLIG-RXN RXN-6622) PREDECESSORS - (RXN-6622 RXN-6601) PREDECESSORS - (GAMMA-GLUTAMYLCYCLOTRANSFERASE-RXN RXN-6601) PREDECESSORS - (RXN-6601 GLUTATHIONE-SYN-RXN) PREDECESSORS - GLUTATHIONESYN-PWY PREDECESSORS - (5-OXOPROLINASE-ATP-HYDROLYSING-RXN GAMMA-GLUTAMYLCYCLOTRANSFERASE-RXN) PREDECESSORS - (GLUTCYSLIG-RXN 5-OXOPROLINASE-ATP-HYDROLYSING-RXN) PREDECESSORS - (GLUTATHIONE-SYN-RXN GLUTCYSLIG-RXN) PRIMARIES - (RXN-6601 (GLUTATHIONE) (CYS-GLY 5-L-GLUTAMYL-L-AMINO-ACID)) PRIMARIES - (RXN-6622 (CYS-GLY) (CYS GLY)) REACTION-LAYOUT - (GAMMA-GLUTAMYLCYCLOTRANSFERASE-RXN (:LEFT-PRIMARIES 5-L-GLUTAMYL-L-AMINO-ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-OXOPROLINE)) REACTION-LAYOUT - (5-OXOPROLINASE-ATP-HYDROLYSING-RXN (:LEFT-PRIMARIES 5-OXOPROLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLT)) REACTION-LAYOUT - (RXN-6601 (:LEFT-PRIMARIES CYS-GLY 5-L-GLUTAMYL-L-AMINO-ACID) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GLUTATHIONE)) REACTION-LAYOUT - (RXN-6622 (:LEFT-PRIMARIES CYS-GLY) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLY CYS)) REACTION-LAYOUT - (GLUTATHIONESYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LIST - GAMMA-GLUTAMYLCYCLOTRANSFERASE-RXN REACTION-LIST - 5-OXOPROLINASE-ATP-HYDROLYSING-RXN REACTION-LIST - RXN-6601 REACTION-LIST - RXN-6622 REACTION-LIST - GLUTATHIONESYN-PWY SUB-PATHWAYS - GLUTATHIONESYN-PWY SYNONYMS - glutathione metabolism // UNIQUE-ID - SER-GLYSYN-PWY TYPES - Amino-Acid-Biosynthesis TYPES - Super-Pathways COMMON-NAME - superpathway of serine and glycine biosynthesis I PREDECESSORS - (GLYOHMETRANS-RXN RXN0-5114) PREDECESSORS - GLYSYN-PWY PREDECESSORS - SERSYN-PWY REACTION-LAYOUT - (GLYSYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (SERSYN-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LIST - GLYSYN-PWY REACTION-LIST - SERSYN-PWY SUB-PATHWAYS - SERSYN-PWY SUB-PATHWAYS - GLYSYN-PWY // UNIQUE-ID - PWY-4242 TYPES - CoA-Biosynthesis TYPES - Super-Pathways COMMON-NAME - pantothenate and coenzyme A biosynthesis III PREDECESSORS - (PANTOTHENATE-KIN-RXN RXN-6401) PREDECESSORS - PWY-3961 PREDECESSORS - COA-PWY REACTION-LAYOUT - (COA-PWY (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LAYOUT - (PWY-3961 (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LIST - COA-PWY REACTION-LIST - PWY-3961 SUB-PATHWAYS - COA-PWY SUB-PATHWAYS - PWY-3961 // UNIQUE-ID - PWY-6213 TYPES - Transport-Pathways COMMON-NAME - cadmium transport I CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - O-28 CREDITS - |pujar| PREDECESSORS - (3.6.3.3-RXN) REACTION-LAYOUT - (3.6.3.3-RXN (:LEFT-PRIMARIES CD+2) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CD+2)) REACTION-LIST - 3.6.3.3-RXN // UNIQUE-ID - PWY-6150 TYPES - Transport-Pathways COMMON-NAME - potassium transport II CITATIONS - :EV-COMP-AINF:3498597087:jaiswalp CREDITS - O-28 CREDITS - |pujar| REACTION-LAYOUT - (TRANS-RXN-185 (:LEFT-PRIMARIES K+) (:DIRECTION :L2R) (:RIGHT-PRIMARIES K+)) REACTION-LIST - TRANS-RXN-185 SYNONYMS - two pore outward rectifying K+ channel transport // UNIQUE-ID - PWY-6166 TYPES - Transport-Pathways COMMON-NAME - calcium transport I CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - O-28 CREDITS - |pujar| PREDECESSORS - (TRANS-RXN-192) PREDECESSORS - (TRANS-RXN-191) PRIMARIES - (TRANS-RXN-192 NIL NIL) PRIMARIES - (TRANS-RXN-191 NIL NIL) REACTION-LAYOUT - (TRANS-RXN-192 (:LEFT-PRIMARIES CA+2) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CA+2)) REACTION-LAYOUT - (TRANS-RXN-191 (:LEFT-PRIMARIES CA+2) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CA+2)) REACTION-LIST - TRANS-RXN-192 REACTION-LIST - TRANS-RXN-191 // UNIQUE-ID - PWY-6238 TYPES - Transport-Pathways COMMON-NAME - nucleobase ascorbate transport II CITATIONS - :EV-COMP-AINF:3497824359:liya CREDITS - O-28 CREDITS - |pujar| PATHWAY-LINKS - (|Cytochromes-C| (PWY-882 . :INCOMING)) PATHWAY-LINKS - (ASCORBATE PWY-882) PREDECESSORS - (TRANS-RXN-208 GALACTONOLACTONE-DEHYDROGENASE-RXN) PREDECESSORS - (GALACTONOLACTONE-DEHYDROGENASE-RXN) PRIMARIES - (GALACTONOLACTONE-DEHYDROGENASE-RXN (|Cytochromes-C|) (ASCORBATE)) REACTION-LAYOUT - (GALACTONOLACTONE-DEHYDROGENASE-RXN (:LEFT-PRIMARIES |Cytochromes-C|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ASCORBATE)) REACTION-LAYOUT - (TRANS-RXN-208 (:LEFT-PRIMARIES ASCORBATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ASCORBATE)) REACTION-LIST - GALACTONOLACTONE-DEHYDROGENASE-RXN REACTION-LIST - TRANS-RXN-208 // UNIQUE-ID - PWY-6137 TYPES - Transport-Pathways COMMON-NAME - copper transport II CITATIONS - :EV-COMP-AINF:3497824359:liya CREDITS - O-28 CREDITS - |pujar| REACTION-LAYOUT - (3.6.3.4-RXN (:LEFT-PRIMARIES CU+2) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CU+2)) REACTION-LIST - 3.6.3.4-RXN SYNONYMS - copper transport in roots // UNIQUE-ID - GLYOXYLATE-BYPASS TYPES - Energy-Metabolism COMMON-NAME - glyoxylate cycle CREDITS - SRI CREDITS - |caspi| IN-PATHWAY - PWY-561 KEY-REACTIONS - ISOCIT-CLEAV-RXN KEY-REACTIONS - MALSYN-RXN PREDECESSORS - (ACONITATEDEHYDR-RXN CITSYN-RXN) PREDECESSORS - (CITSYN-RXN MALATE-DEH-RXN) PREDECESSORS - (ACONITATEHYDR-RXN ACONITATEDEHYDR-RXN) PREDECESSORS - (ISOCIT-CLEAV-RXN ACONITATEHYDR-RXN) PREDECESSORS - (MALSYN-RXN ISOCIT-CLEAV-RXN) PREDECESSORS - (MALATE-DEH-RXN MALSYN-RXN) REACTION-LAYOUT - (MALATE-DEH-RXN (:LEFT-PRIMARIES MAL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OXALACETIC_ACID)) REACTION-LAYOUT - (ACONITATEDEHYDR-RXN (:LEFT-PRIMARIES CIT) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CIS-ACONITATE)) REACTION-LAYOUT - (CITSYN-RXN (:LEFT-PRIMARIES OXALACETIC_ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CIT)) REACTION-LAYOUT - (ACONITATEHYDR-RXN (:LEFT-PRIMARIES CIS-ACONITATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES THREO-DS-ISO-CITRATE)) REACTION-LAYOUT - (ISOCIT-CLEAV-RXN (:LEFT-PRIMARIES THREO-DS-ISO-CITRATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLYOX)) REACTION-LAYOUT - (MALSYN-RXN (:LEFT-PRIMARIES GLYOX) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MAL)) REACTION-LIST - MALATE-DEH-RXN REACTION-LIST - ACONITATEDEHYDR-RXN REACTION-LIST - CITSYN-RXN REACTION-LIST - ACONITATEHYDR-RXN REACTION-LIST - ISOCIT-CLEAV-RXN REACTION-LIST - MALSYN-RXN SUPER-PATHWAYS - PWY-561 SYNONYMS - glyoxylate bypass SYNONYMS - glyoxylate shunt // UNIQUE-ID - PWY-5723 TYPES - Energy-Metabolism COMMON-NAME - Rubisco shunt CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |zhang| KEY-REACTIONS - RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN PATHWAY-LINKS - (PYRUVATE PYRUVDEHYD-PWY) PREDECESSORS - (PEPDEPHOS-RXN 2PGADEHYDRAT-RXN) PREDECESSORS - (2PGADEHYDRAT-RXN 3PGAREARR-RXN) PREDECESSORS - (3PGAREARR-RXN RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN) PREDECESSORS - (2PGADEHYDRAT-RXN RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN) PREDECESSORS - (PEPDEPHOS-RXN RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN) PREDECESSORS - (RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN PHOSPHORIBULOKINASE-RXN) PREDECESSORS - (PHOSPHORIBULOKINASE-RXN RIB5PISOM-RXN) PREDECESSORS - (PHOSPHORIBULOKINASE-RXN RIBULP3EPIM-RXN) PREDECESSORS - (RIBULP3EPIM-RXN 1TRANSKETO-RXN) PREDECESSORS - (RIB5PISOM-RXN 1TRANSKETO-RXN) PREDECESSORS - (1TRANSKETO-RXN TRANSALDOL-RXN) PREDECESSORS - (TRANSALDOL-RXN 2TRANSKETO-RXN) PRIMARIES - (2PGADEHYDRAT-RXN (2-PG) (PHOSPHO-ENOL-PYRUVATE)) PRIMARIES - (PEPDEPHOS-RXN (PHOSPHO-ENOL-PYRUVATE) (PYRUVATE)) PRIMARIES - (PHOSPHORIBULOKINASE-RXN (RIBULOSE-5P) (D-RIBULOSE-15-P2)) PRIMARIES - (RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN (D-RIBULOSE-15-P2) (G3P)) PRIMARIES - (1TRANSKETO-RXN (GAP D-SEDOHEPTULOSE-7-P) (XYLULOSE-5-PHOSPHATE RIBOSE-5P)) PRIMARIES - (2TRANSKETO-RXN (GAP FRUCTOSE-6P) (XYLULOSE-5-PHOSPHATE ERYTHROSE-4P)) REACTION-LAYOUT - (3PGAREARR-RXN (:LEFT-PRIMARIES G3P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-PG)) REACTION-LAYOUT - (2PGADEHYDRAT-RXN (:LEFT-PRIMARIES 2-PG) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE)) REACTION-LAYOUT - (PEPDEPHOS-RXN (:LEFT-PRIMARIES PYRUVATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE)) REACTION-LAYOUT - (PHOSPHORIBULOKINASE-RXN (:LEFT-PRIMARIES RIBULOSE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES D-RIBULOSE-15-P2)) REACTION-LAYOUT - (RIBULP3EPIM-RXN (:LEFT-PRIMARIES RIBULOSE-5P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES XYLULOSE-5-PHOSPHATE)) REACTION-LAYOUT - (RIB5PISOM-RXN (:LEFT-PRIMARIES RIBOSE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES RIBULOSE-5P)) REACTION-LAYOUT - (TRANSALDOL-RXN (:LEFT-PRIMARIES D-SEDOHEPTULOSE-7-P GAP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES ERYTHROSE-4P FRUCTOSE-6P)) REACTION-LAYOUT - (1TRANSKETO-RXN (:LEFT-PRIMARIES GAP D-SEDOHEPTULOSE-7-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XYLULOSE-5-PHOSPHATE RIBOSE-5P)) REACTION-LAYOUT - (2TRANSKETO-RXN (:LEFT-PRIMARIES XYLULOSE-5-PHOSPHATE ERYTHROSE-4P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GAP FRUCTOSE-6P)) REACTION-LAYOUT - (RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN (:LEFT-PRIMARIES D-RIBULOSE-15-P2) (:DIRECTION :L2R) (:RIGHT-PRIMARIES G3P)) REACTION-LIST - 3PGAREARR-RXN REACTION-LIST - 2PGADEHYDRAT-RXN REACTION-LIST - PEPDEPHOS-RXN REACTION-LIST - PHOSPHORIBULOKINASE-RXN REACTION-LIST - RIBULP3EPIM-RXN REACTION-LIST - RIB5PISOM-RXN REACTION-LIST - TRANSALDOL-RXN REACTION-LIST - 1TRANSKETO-RXN REACTION-LIST - 2TRANSKETO-RXN REACTION-LIST - RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN // UNIQUE-ID - PWY-5481 TYPES - Pyruvate-Degradation COMMON-NAME - pyruvate fermentation to lactate CREDITS - SRI CREDITS - |caspi| IN-PATHWAY - PWY-3801 PREDECESSORS - (L-LACTATE-DEHYDROGENASE-RXN) PRIMARIES - (L-LACTATE-DEHYDROGENASE-RXN (PYRUVATE) (L-LACTATE)) REACTION-LAYOUT - (L-LACTATE-DEHYDROGENASE-RXN (:LEFT-PRIMARIES L-LACTATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PYRUVATE)) REACTION-LIST - L-LACTATE-DEHYDROGENASE-RXN SUPER-PATHWAYS - PWY-3801 // UNIQUE-ID - PWY-5486 TYPES - Pyruvate-Degradation COMMON-NAME - pyruvate fermentation to ethanol II CREDITS - SRI CREDITS - |caspi| IN-PATHWAY - PWY-3801 KEY-REACTIONS - RXN-6161 PATHWAY-LINKS - (PYRUVATE PWY-1042) PREDECESSORS - (ALCOHOL-DEHYDROG-RXN RXN-6161) PRIMARIES - (RXN-6182 (ALPHA-GLC-6-P) (FRUCTOSE-6P)) PRIMARIES - (PHOSPHOGLUCMUT-RXN (GLC-1-P) (ALPHA-GLC-6-P)) PRIMARIES - (PEPDEPHOS-RXN (PHOSPHO-ENOL-PYRUVATE) (PYRUVATE)) PRIMARIES - (L-LACTATE-DEHYDROGENASE-RXN (PYRUVATE) (L-LACTATE)) PRIMARIES - (PGLUCISOM-RXN (GLC-6-P) (FRUCTOSE-6P)) PRIMARIES - (ALCOHOL-DEHYDROG-RXN (ACETALD) (ETOH)) PRIMARIES - (RXN-6161 (PYRUVATE) (ACETALD)) PRIMARIES - (2PGADEHYDRAT-RXN (2-PG) (PHOSPHO-ENOL-PYRUVATE)) PRIMARIES - (3PGAREARR-RXN (G3P) (2-PG)) PRIMARIES - (TRIOSEPISOMERIZATION-RXN (DIHYDROXY-ACETONE-PHOSPHATE) (GAP)) PRIMARIES - (PHOSGLYPHOS-RXN (DPG) (G3P)) PRIMARIES - (GAPOXNPHOSPHN-RXN (GAP) (DPG)) PRIMARIES - (F16ALDOLASE-RXN (FRUCTOSE-16-DIPHOSPHATE) (DIHYDROXY-ACETONE-PHOSPHATE GAP)) PRIMARIES - (6PFRUCTPHOS-RXN (FRUCTOSE-6P) (FRUCTOSE-16-DIPHOSPHATE)) PRIMARIES - (FRUCTOKINASE-RXN (FRU) (FRUCTOSE-6P)) PRIMARIES - (GLUC1PURIDYLTRANS-RXN (UDP-GLUCOSE) (GLC-1-P)) PRIMARIES - (SUCROSE-SYNTHASE-RXN (SUCROSE) (FRU UDP-GLUCOSE)) REACTION-LAYOUT - (RXN-6161 (:LEFT-PRIMARIES PYRUVATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ACETALD)) REACTION-LAYOUT - (ALCOHOL-DEHYDROG-RXN (:LEFT-PRIMARIES ACETALD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ETOH)) REACTION-LIST - RXN-6161 REACTION-LIST - ALCOHOL-DEHYDROG-RXN SUPER-PATHWAYS - PWY-3801 // UNIQUE-ID - METHFORM-PWY TYPES - METHANOGENESIS COMMON-NAME - methyl-coenzyme M reduction to methane CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |caspi| CREDITS - O-18 CREDITS - |pellegrini-toole| PREDECESSORS - (METHYL-COM-HTP-RXN) PRIMARIES - (METHYL-COM-HTP-RXN (|Me-CoM|) (CH4 CH4)) PRIMARIES - (MTAMBARKMULTI-RXN (|CoM| METOH) NIL) PRIMARIES - (1.12.99.2-RXN (CPD-1282) (CPD-1281 |CoM|)) REACTION-LAYOUT - (METHYL-COM-HTP-RXN (:LEFT-PRIMARIES |Me-CoM|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CH4)) REACTION-LIST - METHYL-COM-HTP-RXN SYNONYMS - methane formation from methanol SYNONYMS - methanogenesis // UNIQUE-ID - PWY-241 TYPES - Photosynthesis COMMON-NAME - C4 photosynthetic carbon assimilation cycle CITATIONS - :EV-COMP-AINF:3497824357:liya PREDECESSORS - (PEPCARBOX-RXN PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN) PREDECESSORS - (PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN MALIC-NADP-RXN) PREDECESSORS - (MALIC-NADP-RXN MALATE-DEHYDROGENASE-NADP+-RXN) PREDECESSORS - (MALATE-DEHYDROGENASE-NADP+-RXN PEPCARBOX-RXN) REACTION-LAYOUT - (MALATE-DEHYDROGENASE-NADP+-RXN (:LEFT-PRIMARIES MAL) (:DIRECTION :R2L) (:RIGHT-PRIMARIES OXALACETIC_ACID)) REACTION-LAYOUT - (PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN (:LEFT-PRIMARIES PYRUVATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE)) REACTION-LAYOUT - (MALIC-NADP-RXN (:LEFT-PRIMARIES MAL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PYRUVATE)) REACTION-LAYOUT - (PEPCARBOX-RXN (:LEFT-PRIMARIES OXALACETIC_ACID) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE)) REACTION-LIST - MALATE-DEHYDROGENASE-NADP+-RXN REACTION-LIST - PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN REACTION-LIST - MALIC-NADP-RXN REACTION-LIST - PEPCARBOX-RXN SYNONYMS - PCA cycle SYNONYMS - C4 photosynthesis // UNIQUE-ID - PWY-101 TYPES - Photosynthesis COMMON-NAME - photosynthesis light reactions CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - SRI CREDITS - |caspi| CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |zhang| IN-PATHWAY - PHOTOALL-PWY PREDECESSORS - (1.18.1.2-RXN RXN490-3650) PREDECESSORS - (RXN490-3650 PSII-RXN) PRIMARIES - (1.18.1.2-RXN NIL (NADPH)) REACTION-LAYOUT - (1.18.1.2-RXN (:LEFT-PRIMARIES |Reduced-ferredoxins|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NADPH)) REACTION-LAYOUT - (RXN490-3650 (:LEFT-PRIMARIES E-) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Reduced-ferredoxins|)) REACTION-LAYOUT - (PSII-RXN (:LEFT-PRIMARIES E-) (:DIRECTION :R2L) (:RIGHT-PRIMARIES WATER)) REACTION-LIST - 1.18.1.2-RXN REACTION-LIST - RXN490-3650 REACTION-LIST - PSII-RXN SUPER-PATHWAYS - PHOTOALL-PWY // UNIQUE-ID - PWY-181 TYPES - Photosynthesis COMMON-NAME - photorespiration CITATIONS - :EV-COMP-AINF:3497824356:liya KEY-REACTIONS - RXN-961 PATHWAY-LINKS - (HYDROGEN-PEROXIDE DETOX1-PWY) PATHWAY-LINKS - (G3P CALVIN-PWY) PATHWAY-LINKS - (D-RIBULOSE-15-P2 CALVIN-PWY) PREDECESSORS - (GLYCERATE-DEHYDROGENASE-RXN SERINE-GLYOXYLATE-AMINOTRANSFERASE-RXN) PREDECESSORS - (SERINE-GLYOXYLATE-AMINOTRANSFERASE-RXN GLYOHMETRANS-RXN) PREDECESSORS - (SERINE-GLYOXYLATE-AMINOTRANSFERASE-RXN RXN-969) PREDECESSORS - (GLYCINE-AMINOTRANSFERASE-RXN RXN-969) PREDECESSORS - (GPH-RXN RXN-961) PREDECESSORS - (RXN-969 GPH-RXN) PREDECESSORS - (GCVMULTI-RXN GLYCINE-AMINOTRANSFERASE-RXN) PREDECESSORS - (GLYOHMETRANS-RXN GCVMULTI-RXN) PREDECESSORS - (GLY3KIN-RXN GLYCERATE-DEHYDROGENASE-RXN) PRIMARIES - (RXN-969 (GLYCOLLATE) (HYDROGEN-PEROXIDE GLYOX)) PRIMARIES - (RXN-961 (D-RIBULOSE-15-P2) (CPD-67)) PRIMARIES - (SERINE-GLYOXYLATE-AMINOTRANSFERASE-RXN (SER GLYOX) (GLY OH-PYR)) PRIMARIES - (GLY3KIN-RXN (GLYCERATE) (G3P)) PRIMARIES - (GLYCERATE-DEHYDROGENASE-RXN (OH-PYR) (GLYCERATE)) PRIMARIES - (RXN-974 (SER) (OH-PYR)) PRIMARIES - (GLYOHMETRANS-RXN (METHYLENE-THF) (SER)) PRIMARIES - (GCVMULTI-RXN (GLY) (METHYLENE-THF)) PRIMARIES - (GLYCINE-AMINOTRANSFERASE-RXN (GLYOX) (GLY)) PRIMARIES - (GPH-RXN (CPD-67) (GLYCOLLATE)) PRIMARIES - (RXN-971 (GLY) (METHYLENE-THF)) PRIMARIES - (RXN-970 (GLYOX) (GLY)) REACTION-LAYOUT - (SERINE-GLYOXYLATE-AMINOTRANSFERASE-RXN (:LEFT-PRIMARIES SER GLYOX) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLY OH-PYR)) REACTION-LAYOUT - (GCVMULTI-RXN (:LEFT-PRIMARIES GLY) (:DIRECTION :L2R) (:RIGHT-PRIMARIES METHYLENE-THF)) REACTION-LAYOUT - (GLYCERATE-DEHYDROGENASE-RXN (:LEFT-PRIMARIES GLYCERATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES OH-PYR)) REACTION-LAYOUT - (GLYCINE-AMINOTRANSFERASE-RXN (:LEFT-PRIMARIES GLY) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GLYOX)) REACTION-LAYOUT - (GLY3KIN-RXN (:LEFT-PRIMARIES GLYCERATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES G3P)) REACTION-LAYOUT - (GLYOHMETRANS-RXN (:LEFT-PRIMARIES SER) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GLY METHYLENE-THF)) REACTION-LAYOUT - (RXN-969 (:LEFT-PRIMARIES GLYCOLLATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HYDROGEN-PEROXIDE GLYOX)) REACTION-LAYOUT - (GPH-RXN (:LEFT-PRIMARIES CPD-67) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLYCOLLATE)) REACTION-LAYOUT - (RXN-961 (:LEFT-PRIMARIES D-RIBULOSE-15-P2) (:DIRECTION :L2R) (:RIGHT-PRIMARIES G3P CPD-67)) REACTION-LIST - SERINE-GLYOXYLATE-AMINOTRANSFERASE-RXN REACTION-LIST - GCVMULTI-RXN REACTION-LIST - GLYCERATE-DEHYDROGENASE-RXN REACTION-LIST - GLYCINE-AMINOTRANSFERASE-RXN REACTION-LIST - GLY3KIN-RXN REACTION-LIST - GLYOHMETRANS-RXN REACTION-LIST - RXN-969 REACTION-LIST - GPH-RXN REACTION-LIST - RXN-961 SYNONYMS - C2 photorespiratory carbon oxidation cycle SYNONYMS - PCO cycle // UNIQUE-ID - PWY-1141 TYPES - Photosynthesis COMMON-NAME - xanthophyll cycle CITATIONS - :EV-COMP-AINF:3497824358:liya PREDECESSORS - (RXN-7985 RXN-7984) PREDECESSORS - (RXN-7984 RXN-7979) PREDECESSORS - (RXN-7978 RXN-7985) PREDECESSORS - (RXN-7979 RXN-7978) PRIMARIES - (RXN-7978 (CPD1F-130) (CPD1F-131)) PRIMARIES - (RXN-7979 (CPD1F-131) (CPD1F-133)) PRIMARIES - (RXN-7984 (CPD1F-133) (CPD1F-131)) PRIMARIES - (RXN-7985 (CPD1F-131) (CPD1F-130)) REACTION-LAYOUT - (RXN-7978 (:LEFT-PRIMARIES CPD1F-130) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-131)) REACTION-LAYOUT - (RXN-7979 (:LEFT-PRIMARIES CPD1F-131) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-133)) REACTION-LAYOUT - (RXN-7984 (:LEFT-PRIMARIES CPD1F-133) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-131)) REACTION-LAYOUT - (RXN-7985 (:LEFT-PRIMARIES CPD1F-131) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-130)) REACTION-LIST - RXN-7978 REACTION-LIST - RXN-7979 REACTION-LIST - RXN-7984 REACTION-LIST - RXN-7985 SYNONYMS - violaxanthin cycle // UNIQUE-ID - CALVIN-PWY TYPES - Autotrophic-CO2-Fixation TYPES - CARBO-BIOSYNTHESIS TYPES - Photosynthesis COMMON-NAME - Calvin-Benson-Bassham cycle CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - SRI CREDITS - |caspi| CREDITS - O-18 CREDITS - |pellegrini-toole| IN-PATHWAY - PHOTOALL-PWY KEY-REACTIONS - RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN PATHWAY-LINKS - (FRUCTOSE-6P |Biosynthesis|) PREDECESSORS - (RIB5PISOM-RXN 1TRANSKETO-RXN) PREDECESSORS - (PHOSPHORIBULOKINASE-RXN RIBULP3EPIM-RXN) PREDECESSORS - (RIBULP3EPIM-RXN 2TRANSKETO-RXN) PREDECESSORS - (TRIOSEPISOMERIZATION-RXN 1.2.1.13-RXN) PREDECESSORS - (1.2.1.13-RXN PHOSGLYPHOS-RXN) PREDECESSORS - (PHOSGLYPHOS-RXN RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN) PREDECESSORS - (TRIOSEPISOMERIZATION-RXN) PREDECESSORS - (SEDOBISALDOL-RXN TRIOSEPISOMERIZATION-RXN) PREDECESSORS - (SEDOHEPTULOSE-BISPHOSPHATASE-RXN SEDOBISALDOL-RXN) PREDECESSORS - (1TRANSKETO-RXN SEDOHEPTULOSE-BISPHOSPHATASE-RXN) PREDECESSORS - (RIBULP3EPIM-RXN 1TRANSKETO-RXN) PREDECESSORS - (RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN PHOSPHORIBULOKINASE-RXN) PREDECESSORS - (PHOSPHORIBULOKINASE-RXN RIB5PISOM-RXN) PREDECESSORS - (2TRANSKETO-RXN F16BDEPHOS-RXN) PREDECESSORS - (F16BDEPHOS-RXN F16ALDOLASE-RXN) PREDECESSORS - (F16ALDOLASE-RXN TRIOSEPISOMERIZATION-RXN) PRIMARIES - (RIB5PISOM-RXN (RIBOSE-5P) NIL) PRIMARIES - (2TRANSKETO-RXN (FRUCTOSE-6P) (XYLULOSE-5-PHOSPHATE)) PRIMARIES - (RIBULP3EPIM-RXN (XYLULOSE-5-PHOSPHATE) (RIBULOSE-5P)) PRIMARIES - (1TRANSKETO-RXN (D-SEDOHEPTULOSE-7-P) (RIBOSE-5P XYLULOSE-5-PHOSPHATE)) PRIMARIES - (F16ALDOLASE-RXN NIL (FRUCTOSE-16-DIPHOSPHATE)) PRIMARIES - (TRIOSEPISOMERIZATION-RXN (GAP) NIL) PRIMARIES - (1.2.1.13-RXN (DPG) (GAP)) PRIMARIES - (PHOSGLYPHOS-RXN (G3P) (DPG)) REACTION-LAYOUT - (RIB5PISOM-RXN (:LEFT-PRIMARIES RIBOSE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES RIBULOSE-5P)) REACTION-LAYOUT - (PHOSPHORIBULOKINASE-RXN (:LEFT-PRIMARIES RIBULOSE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES D-RIBULOSE-15-P2)) REACTION-LAYOUT - (RIBULP3EPIM-RXN (:LEFT-PRIMARIES RIBULOSE-5P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES XYLULOSE-5-PHOSPHATE)) REACTION-LAYOUT - (SEDOHEPTULOSE-BISPHOSPHATASE-RXN (:LEFT-PRIMARIES D-SEDOHEPTULOSE-1-7-P2) (:DIRECTION :L2R) (:RIGHT-PRIMARIES D-SEDOHEPTULOSE-7-P)) REACTION-LAYOUT - (2TRANSKETO-RXN (:LEFT-PRIMARIES XYLULOSE-5-PHOSPHATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GAP FRUCTOSE-6P)) REACTION-LAYOUT - (1TRANSKETO-RXN (:LEFT-PRIMARIES GAP D-SEDOHEPTULOSE-7-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XYLULOSE-5-PHOSPHATE RIBOSE-5P)) REACTION-LAYOUT - (F16BDEPHOS-RXN (:LEFT-PRIMARIES FRUCTOSE-16-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-6P)) REACTION-LAYOUT - (SEDOBISALDOL-RXN (:LEFT-PRIMARIES DIHYDROXY-ACETONE-PHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES D-SEDOHEPTULOSE-1-7-P2)) REACTION-LAYOUT - (F16ALDOLASE-RXN (:LEFT-PRIMARIES FRUCTOSE-16-DIPHOSPHATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GAP DIHYDROXY-ACETONE-PHOSPHATE)) REACTION-LAYOUT - (TRIOSEPISOMERIZATION-RXN (:LEFT-PRIMARIES GAP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROXY-ACETONE-PHOSPHATE)) REACTION-LAYOUT - (1.2.1.13-RXN (:LEFT-PRIMARIES GAP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DPG)) REACTION-LAYOUT - (PHOSGLYPHOS-RXN (:LEFT-PRIMARIES G3P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DPG)) REACTION-LAYOUT - (RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN (:LEFT-PRIMARIES D-RIBULOSE-15-P2) (:DIRECTION :L2R) (:RIGHT-PRIMARIES G3P)) REACTION-LIST - RIB5PISOM-RXN REACTION-LIST - PHOSPHORIBULOKINASE-RXN REACTION-LIST - RIBULP3EPIM-RXN REACTION-LIST - SEDOHEPTULOSE-BISPHOSPHATASE-RXN REACTION-LIST - 2TRANSKETO-RXN REACTION-LIST - 1TRANSKETO-RXN REACTION-LIST - F16BDEPHOS-RXN REACTION-LIST - SEDOBISALDOL-RXN REACTION-LIST - F16ALDOLASE-RXN REACTION-LIST - TRIOSEPISOMERIZATION-RXN REACTION-LIST - 1.2.1.13-RXN REACTION-LIST - PHOSGLYPHOS-RXN REACTION-LIST - RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN SUPER-PATHWAYS - PHOTOALL-PWY SYNONYMS - photosynthetic dark reactions SYNONYMS - photosynthetic CO2 fixation SYNONYMS - reductive pentose phosphate pathway SYNONYMS - Calvin cycle SYNONYMS - photosynthesis - dark reaction SYNONYMS - carbon fixation SYNONYMS - Calvin-Benson cycle // UNIQUE-ID - PWY-5913 TYPES - TCA-VARIANTS COMMON-NAME - TCA cycle variation IV CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (L-ASPARTATE METHIONINE-SYN LYSINE-SYN THREONINE-BIOSYNTHESIS ISOLEUCINE-SYN) PATHWAY-LINKS - (GLT ARGININE-SYN PROLINE-SYN) PATHWAY-LINKS - (ACETYL-COA PYRUVDEHYD-PWY) PREDECESSORS - (SUCCCOASYN-RXN SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN) PREDECESSORS - (ASPAMINOTRANS-RXN PEPCARBOX-RXN) PREDECESSORS - (MALATE-DEH-RXN PEPCARBOX-RXN) PREDECESSORS - (CITSYN-RXN PEPCARBOX-RXN) PREDECESSORS - (SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN FUMHYDR-RXN) PREDECESSORS - (FUMHYDR-RXN MALATE-DEH-RXN) PREDECESSORS - (GLUTDEHYD-RXN ISOCITDEH-RXN) PREDECESSORS - (CITSYN-RXN MALATE-DEH-RXN) PREDECESSORS - (ISOCITDEH-RXN ACONITATEHYDR-RXN) PREDECESSORS - (ACONITATEHYDR-RXN ACONITATEDEHYDR-RXN) PREDECESSORS - (ACONITATEDEHYDR-RXN CITSYN-RXN) PRIMARIES - (SUCCCOASYN-RXN NIL (SUC-COA)) PRIMARIES - (SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN NIL (SUC)) PRIMARIES - (CITSYN-RXN (ACETYL-COA OXALACETIC_ACID) (CIT)) PRIMARIES - (FUMHYDR-RXN (MAL) (FUM)) PRIMARIES - (MALATE-DEH-RXN (OXALACETIC_ACID) (MAL)) REACTION-LAYOUT - (MALATE-DEH-RXN (:LEFT-PRIMARIES MAL) (:DIRECTION :R2L) (:RIGHT-PRIMARIES OXALACETIC_ACID)) REACTION-LAYOUT - (SUCCCOASYN-RXN (:LEFT-PRIMARIES SUC) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SUC-COA)) REACTION-LAYOUT - (ASPAMINOTRANS-RXN (:LEFT-PRIMARIES 2-KETOGLUTARATE L-ASPARTATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES OXALACETIC_ACID)) REACTION-LAYOUT - (PEPCARBOX-RXN (:LEFT-PRIMARIES OXALACETIC_ACID) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CARBON-DIOXIDE)) REACTION-LAYOUT - (GLUTDEHYD-RXN (:LEFT-PRIMARIES NADP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 2-KETOGLUTARATE)) REACTION-LAYOUT - (SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN (:LEFT-PRIMARIES SUC) (:DIRECTION :R2L) (:RIGHT-PRIMARIES FUM)) REACTION-LAYOUT - (ACONITATEDEHYDR-RXN (:LEFT-PRIMARIES CIT) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CIS-ACONITATE)) REACTION-LAYOUT - (CITSYN-RXN (:LEFT-PRIMARIES ACETYL-COA OXALACETIC_ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CIT)) REACTION-LAYOUT - (ACONITATEHYDR-RXN (:LEFT-PRIMARIES CIS-ACONITATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES THREO-DS-ISO-CITRATE)) REACTION-LAYOUT - (ISOCITDEH-RXN (:LEFT-PRIMARIES NADP THREO-DS-ISO-CITRATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CARBON-DIOXIDE 2-KETOGLUTARATE)) REACTION-LAYOUT - (FUMHYDR-RXN (:LEFT-PRIMARIES MAL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FUM)) REACTION-LIST - MALATE-DEH-RXN REACTION-LIST - SUCCCOASYN-RXN REACTION-LIST - ASPAMINOTRANS-RXN REACTION-LIST - PEPCARBOX-RXN REACTION-LIST - GLUTDEHYD-RXN REACTION-LIST - SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN REACTION-LIST - ACONITATEDEHYDR-RXN REACTION-LIST - CITSYN-RXN REACTION-LIST - ACONITATEHYDR-RXN REACTION-LIST - ISOCITDEH-RXN REACTION-LIST - FUMHYDR-RXN SYNONYMS - TCA cycle -- obligate autotrophs // UNIQUE-ID - PWY-5690 TYPES - TCA-VARIANTS COMMON-NAME - TCA cycle variation III (eukaryotic) CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |caspi| IN-PATHWAY - PWY-5464 PREDECESSORS - (2OXOGLUTARATEDEH-RXN ISOCITRATE-DEHYDROGENASE-NAD+-RXN) PREDECESSORS - (ISOCITRATE-DEHYDROGENASE-NAD+-RXN ACONITATEHYDR-RXN) PREDECESSORS - (SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN SUCCCOASYN-RXN) PREDECESSORS - (CITSYN-RXN MALATE-DEH-RXN) PREDECESSORS - (MALATE-DEH-RXN FUMHYDR-RXN) PREDECESSORS - (FUMHYDR-RXN) PREDECESSORS - (SUCCCOASYN-RXN 2OXOGLUTARATEDEH-RXN) PREDECESSORS - (ACONITATEHYDR-RXN ACONITATEDEHYDR-RXN) PREDECESSORS - (ACONITATEDEHYDR-RXN CITSYN-RXN) PREDECESSORS - (FUMHYDR-RXN SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN) PRIMARIES - (CITSYN-RXN NIL NIL) PRIMARIES - (MALATE-DEH-RXN (MAL) (OXALACETIC_ACID)) REACTION-LAYOUT - (MALATE-DEH-RXN (:LEFT-PRIMARIES MAL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OXALACETIC_ACID)) REACTION-LAYOUT - (ISOCITRATE-DEHYDROGENASE-NAD+-RXN (:LEFT-PRIMARIES THREO-DS-ISO-CITRATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-KETOGLUTARATE)) REACTION-LAYOUT - (SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN (:LEFT-PRIMARIES SUC) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FUM)) REACTION-LAYOUT - (ACONITATEDEHYDR-RXN (:LEFT-PRIMARIES CIT) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CIS-ACONITATE)) REACTION-LAYOUT - (CITSYN-RXN (:LEFT-PRIMARIES OXALACETIC_ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CIT)) REACTION-LAYOUT - (ACONITATEHYDR-RXN (:LEFT-PRIMARIES CIS-ACONITATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES THREO-DS-ISO-CITRATE)) REACTION-LAYOUT - (2OXOGLUTARATEDEH-RXN (:LEFT-PRIMARIES 2-KETOGLUTARATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SUC-COA)) REACTION-LAYOUT - (SUCCCOASYN-RXN (:LEFT-PRIMARIES SUC) (:DIRECTION :R2L) (:RIGHT-PRIMARIES SUC-COA)) REACTION-LAYOUT - (FUMHYDR-RXN (:LEFT-PRIMARIES MAL) (:DIRECTION :R2L) (:RIGHT-PRIMARIES FUM)) REACTION-LIST - MALATE-DEH-RXN REACTION-LIST - ISOCITRATE-DEHYDROGENASE-NAD+-RXN REACTION-LIST - SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN REACTION-LIST - ACONITATEDEHYDR-RXN REACTION-LIST - CITSYN-RXN REACTION-LIST - ACONITATEHYDR-RXN REACTION-LIST - 2OXOGLUTARATEDEH-RXN REACTION-LIST - SUCCCOASYN-RXN REACTION-LIST - FUMHYDR-RXN SUPER-PATHWAYS - PWY-5464 SYNONYMS - TCA SYNONYMS - TCA cycle -- aerobic respiration SYNONYMS - tricarboxylic acid cycle SYNONYMS - citric acid cycle // UNIQUE-ID - PWY-5172 TYPES - Acetyl-CoA-Biosynthesis COMMON-NAME - acetyl-CoA biosynthesis (from citrate) CITATIONS - :EV-COMP-AINF:3497824358:liya IN-PATHWAY - PWY-5173 PATHWAY-LINKS - (ACETYL-COA PWY-5080 PWY1F-FLAVSYN PWY-922) PREDECESSORS - (ATP-CITRATE-PRO-S--LYASE-RXN) PRIMARIES - (ATP-CITRATE-PRO-S--LYASE-RXN (CIT) (ACETYL-COA)) REACTION-LAYOUT - (ATP-CITRATE-PRO-S--LYASE-RXN (:LEFT-PRIMARIES ACETYL-COA) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CIT)) REACTION-LIST - ATP-CITRATE-PRO-S--LYASE-RXN SUPER-PATHWAYS - PWY-5173 // UNIQUE-ID - PYRUVDEHYD-PWY TYPES - Acetyl-CoA-Biosynthesis TYPES - CARBOXYLATES-DEG COMMON-NAME - acetyl-CoA biosynthesis (from pyruvate) CITATIONS - :EV-COMP-AINF:3497824359:liya CREDITS - |caspi| CREDITS - SRI CREDITS - O0-3 CREDITS - |ingraham| IN-PATHWAY - PWY-5464 IN-PATHWAY - PWY-5173 KEY-REACTIONS - RXN0-1134 PATHWAY-LINKS - (PYRUVATE GLYCOLYSIS PWY-1042) PATHWAY-LINKS - (ACETYL-COA PWY-4381) PREDECESSORS - (RXN0-1133 RXN0-1134) PREDECESSORS - (RXN0-1132 RXN0-1133) PREDECESSORS - (RXN0-1134 RXN0-1132) REACTION-LAYOUT - (RXN0-1132 (:LEFT-PRIMARIES |Pyruvate-dehydrogenase-dihydrolipoate|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Pyruvate-dehydrogenase-lipoate|)) REACTION-LAYOUT - (RXN0-1133 (:LEFT-PRIMARIES |Pyruvate-dehydrogenase-dihydrolipoate|) (:DIRECTION :R2L) (:RIGHT-PRIMARIES |Pyruvate-dehydrogenase-acetylDHlipoyl|)) REACTION-LAYOUT - (RXN0-1134 (:LEFT-PRIMARIES |Pyruvate-dehydrogenase-lipoate| PYRUVATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Pyruvate-dehydrogenase-acetylDHlipoyl|)) REACTION-LIST - RXN0-1132 REACTION-LIST - RXN0-1133 REACTION-LIST - RXN0-1134 SUPER-PATHWAYS - PWY-5464 SUPER-PATHWAYS - PWY-5173 SYNONYMS - pyruvate dehydrogenase complex // UNIQUE-ID - PWY-5084 TYPES - Respiration TYPES - Amino-Acid-Degradation COMMON-NAME - 2-ketoglutarate dehydrogenase complex CITATIONS - :EV-COMP-AINF:3497824359:liya CREDITS - SRI CREDITS - |caspi| KEY-REACTIONS - 2OXOGLUTDECARB-RXN PREDECESSORS - (RXN0-1147 2OXOGLUTDECARB-RXN) PREDECESSORS - (RXN-7716 RXN0-1147) PREDECESSORS - (2OXOGLUTDECARB-RXN RXN-7716) REACTION-LAYOUT - (RXN-7716 (:LEFT-PRIMARIES |Oxo-glutarate-dehydrogenase-DH-lipoyl|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Oxo-glutarate-dehydrogenase-lipoyl|)) REACTION-LAYOUT - (RXN0-1147 (:LEFT-PRIMARIES |Oxo-glutarate-dehydrogenase-DH-lipoyl|) (:DIRECTION :R2L) (:RIGHT-PRIMARIES |Oxo-glutarate-dehydro-suc-DH-lipoyl|)) REACTION-LAYOUT - (2OXOGLUTDECARB-RXN (:LEFT-PRIMARIES |Oxo-glutarate-dehydrogenase-lipoyl|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Oxo-glutarate-dehydro-suc-DH-lipoyl|)) REACTION-LIST - RXN-7716 REACTION-LIST - RXN0-1147 REACTION-LIST - 2OXOGLUTDECARB-RXN SYNONYMS - 2-oxoglutarate dehydrogenase complex // UNIQUE-ID - PWY-4302 TYPES - AEROBIC-RESPIRATION COMMON-NAME - aerobic respiration -- electron donor III CITATIONS - :EV-COMP-AINF:3497824358:liya PREDECESSORS - (RXN-6883 RXN-6884) PREDECESSORS - (RXN-6884 RXN-6883) PREDECESSORS - (RXN-6883 SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN) PREDECESSORS - (SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN RXN-6883) PREDECESSORS - (RXN-6883 NADH-DEHYDROG-A-RXN) PREDECESSORS - (NADH-DEHYDROG-A-RXN RXN-6883) PRIMARIES - (RXN-6884 (|Reduced-Ferroproteins| OXYGEN-MOLECULE) (|Oxidized-Ferroproteins| WATER)) PRIMARIES - (SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN (|Ubiquinones| SUC) (|Ubiquinols| FUM)) PRIMARIES - (NADH-DEHYDROG-A-RXN (|Ubiquinones| NADH) (|Ubiquinols| NAD)) PRIMARIES - (RXN-6883 (|Oxidized-Ferroproteins| |Ubiquinols|) (|Reduced-Ferroproteins| |Ubiquinones|)) REACTION-LAYOUT - (NADH-DEHYDROG-A-RXN (:LEFT-PRIMARIES |Ubiquinones| NADH) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Ubiquinols| NAD)) REACTION-LAYOUT - (SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN (:LEFT-PRIMARIES SUC |Ubiquinones|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Ubiquinols| FUM)) REACTION-LAYOUT - (RXN-6884 (:LEFT-PRIMARIES OXYGEN-MOLECULE |Reduced-Ferroproteins|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES WATER |Oxidized-Ferroproteins|)) REACTION-LAYOUT - (RXN-6883 (:LEFT-PRIMARIES |Ubiquinols| |Oxidized-Ferroproteins|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Ubiquinones| |Reduced-Ferroproteins|)) REACTION-LIST - NADH-DEHYDROG-A-RXN REACTION-LIST - SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN REACTION-LIST - RXN-6884 REACTION-LIST - RXN-6883 SYNONYMS - aerobic respiration -- alternative oxidase pathway SYNONYMS - alternative oxidase pathway // UNIQUE-ID - PWY-3781 TYPES - AEROBIC-RESPIRATION COMMON-NAME - aerobic respiration -- electron donor II CITATIONS - :EV-COMP-AINF:3497824358:liya PREDECESSORS - (SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN 1.10.2.2-RXN) PREDECESSORS - (NADH-DEHYDROG-A-RXN 1.10.2.2-RXN) PREDECESSORS - (1.10.2.2-RXN SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN) PREDECESSORS - (1.10.2.2-RXN NADH-DEHYDROG-A-RXN) PREDECESSORS - (CYTOCHROME-C-OXIDASE-RXN 1.10.2.2-RXN) PREDECESSORS - (1.10.2.2-RXN CYTOCHROME-C-OXIDASE-RXN) PRIMARIES - (NADH-DEHYDROG-A-RXN (|Ubiquinones| NADH) (|Ubiquinols| NAD)) PRIMARIES - (SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN (|Ubiquinones| SUC) (|Ubiquinols| FUM)) PRIMARIES - (CYTOCHROME-C-OXIDASE-RXN (OXYGEN-MOLECULE) (WATER)) PRIMARIES - (1.10.2.2-RXN (|Cytochromes-C| |Ubiquinols|) (|Cytochromes-C-Reduced| |Ubiquinones|)) REACTION-LAYOUT - (CYTOCHROME-C-OXIDASE-RXN (:LEFT-PRIMARIES |Cytochromes-C-Reduced| OXYGEN-MOLECULE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Cytochromes-C| WATER)) REACTION-LAYOUT - (NADH-DEHYDROG-A-RXN (:LEFT-PRIMARIES |Ubiquinones| NADH) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Ubiquinols| NAD)) REACTION-LAYOUT - (SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN (:LEFT-PRIMARIES SUC |Ubiquinones|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Ubiquinols| FUM)) REACTION-LAYOUT - (1.10.2.2-RXN (:LEFT-PRIMARIES |Ubiquinols| |Cytochromes-C|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Ubiquinones| |Cytochromes-C-Reduced|)) REACTION-LIST - CYTOCHROME-C-OXIDASE-RXN REACTION-LIST - NADH-DEHYDROG-A-RXN REACTION-LIST - SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN REACTION-LIST - 1.10.2.2-RXN // UNIQUE-ID - PWY-6118 TYPES - OTHER-ENERGY COMMON-NAME - glycerol-3-phosphate shuttle CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (DIHYDROXY-ACETONE-PHOSPHATE GLYCOLYSIS) PREDECESSORS - (1.1.1.8-RXN RXN-9927) PREDECESSORS - (RXN-9927 1.1.1.8-RXN) PRIMARIES - (1.1.1.8-RXN (DIHYDROXY-ACETONE-PHOSPHATE) (GLYCEROL-3P)) REACTION-LAYOUT - (RXN-9927 (:LEFT-PRIMARIES GLYCEROL-3P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROXY-ACETONE-PHOSPHATE)) REACTION-LAYOUT - (1.1.1.8-RXN (:LEFT-PRIMARIES GLYCEROL-3P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DIHYDROXY-ACETONE-PHOSPHATE)) REACTION-LIST - RXN-9927 REACTION-LIST - 1.1.1.8-RXN SYNONYMS - G3P shuttle SYNONYMS - glycerol-3-P shuttle // UNIQUE-ID - NONOXIPENT-PWY TYPES - Pentose-Phosphate-Cycle COMMON-NAME - pentose phosphate pathway (non-oxidative branch) CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - |riley| CREDITS - O-18 CREDITS - O0-3 CREDITS - |ingraham| IN-PATHWAY - PENTOSE-P-PWY PATHWAY-LINKS - (ERYTHROSE-4P ARO-PWY) PATHWAY-LINKS - (RIBULOSE-5P OXIDATIVEPENT-PWY) PREDECESSORS - (2TRANSKETO-RXN TRANSALDOL-RXN) PREDECESSORS - (TRANSALDOL-RXN 1TRANSKETO-RXN) PREDECESSORS - (1TRANSKETO-RXN RIBULP3EPIM-RXN) PREDECESSORS - (1TRANSKETO-RXN RIB5PISOM-RXN) PRIMARIES - (2TRANSKETO-RXN (ERYTHROSE-4P) (GAP)) PRIMARIES - (TRANSALDOL-RXN NIL (FRUCTOSE-6P ERYTHROSE-4P)) REACTION-LAYOUT - (RIB5PISOM-RXN (:LEFT-PRIMARIES RIBOSE-5P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES RIBULOSE-5P)) REACTION-LAYOUT - (RIBULP3EPIM-RXN (:LEFT-PRIMARIES RIBULOSE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XYLULOSE-5-PHOSPHATE)) REACTION-LAYOUT - (1TRANSKETO-RXN (:LEFT-PRIMARIES GAP D-SEDOHEPTULOSE-7-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES XYLULOSE-5-PHOSPHATE RIBOSE-5P)) REACTION-LAYOUT - (2TRANSKETO-RXN (:LEFT-PRIMARIES XYLULOSE-5-PHOSPHATE ERYTHROSE-4P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GAP FRUCTOSE-6P)) REACTION-LAYOUT - (TRANSALDOL-RXN (:LEFT-PRIMARIES D-SEDOHEPTULOSE-7-P GAP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ERYTHROSE-4P FRUCTOSE-6P)) REACTION-LIST - RIB5PISOM-RXN REACTION-LIST - RIBULP3EPIM-RXN REACTION-LIST - 1TRANSKETO-RXN REACTION-LIST - 2TRANSKETO-RXN REACTION-LIST - TRANSALDOL-RXN SUPER-PATHWAYS - PENTOSE-P-PWY // UNIQUE-ID - OXIDATIVEPENT-PWY TYPES - Pentose-Phosphate-Cycle COMMON-NAME - pentose phosphate pathway (oxidative branch) CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - |riley| CREDITS - O-18 CREDITS - O0-3 CREDITS - |ingraham| IN-PATHWAY - PENTOSE-P-PWY PATHWAY-LINKS - (GLC-6-P PWY-842) PATHWAY-LINKS - (RIBULOSE-5P NONOXIPENT-PWY) PREDECESSORS - (6PGLUCONDEHYDROG-RXN 6PGLUCONOLACT-RXN) PREDECESSORS - (6PGLUCONOLACT-RXN GLU6PDEHYDROG-RXN) PREDECESSORS - (GLU6PDEHYDROG-RXN) REACTION-LAYOUT - (GLU6PDEHYDROG-RXN (:LEFT-PRIMARIES GLC-6-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES D-6-P-GLUCONO-DELTA-LACTONE)) REACTION-LAYOUT - (6PGLUCONDEHYDROG-RXN (:LEFT-PRIMARIES CPD-2961) (:DIRECTION :L2R) (:RIGHT-PRIMARIES RIBULOSE-5P)) REACTION-LAYOUT - (6PGLUCONOLACT-RXN (:LEFT-PRIMARIES D-6-P-GLUCONO-DELTA-LACTONE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-2961)) REACTION-LIST - GLU6PDEHYDROG-RXN REACTION-LIST - 6PGLUCONDEHYDROG-RXN REACTION-LIST - 6PGLUCONOLACT-RXN SUPER-PATHWAYS - PENTOSE-P-PWY // UNIQUE-ID - P21-PWY TYPES - Pentose-Phosphate-Cycle COMMON-NAME - pentose phosphate pathway (partial) CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - O-18 CREDITS - |pellegrini-toole| PATHWAY-LINKS - (GAP GLYCOLYSIS) PREDECESSORS - (1TRANSKETO-RXN 2TRANSKETO-RXN) PREDECESSORS - (1TRANSKETO-RXN RIBULP3EPIM-RXN) PRIMARIES - (1TRANSKETO-RXN (XYLULOSE-5-PHOSPHATE) (GAP)) PRIMARIES - (2TRANSKETO-RXN (ERYTHROSE-4P) (GAP)) REACTION-LAYOUT - (2TRANSKETO-RXN (:LEFT-PRIMARIES XYLULOSE-5-PHOSPHATE ERYTHROSE-4P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GAP)) REACTION-LAYOUT - (1TRANSKETO-RXN (:LEFT-PRIMARIES GAP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES XYLULOSE-5-PHOSPHATE)) REACTION-LAYOUT - (RIBULP3EPIM-RXN (:LEFT-PRIMARIES RIBULOSE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XYLULOSE-5-PHOSPHATE)) REACTION-LIST - 2TRANSKETO-RXN REACTION-LIST - 1TRANSKETO-RXN REACTION-LIST - RIBULP3EPIM-RXN SYNONYMS - pentose phosphate pathway, Mycoplasma pneumonia // UNIQUE-ID - PWY-5484 TYPES - GLYCOLYSIS-VARIANTS COMMON-NAME - glycolysis II CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (FRUCTOSE-6P MANNCAT-PWY PWY-3861 SUCUTIL-PWY) PATHWAY-LINKS - (PYRUVATE |Amino-Acid-Biosynthesis| PYRUVDEHYD-PWY) PATHWAY-LINKS - (GLC-6-P PENTOSE-P-PWY (PWY-842 . :INCOMING)) PREDECESSORS - (F16BDEPHOS-RXN 6PFRUCTPHOS-RXN) PREDECESSORS - (6PFRUCTPHOS-RXN F16BDEPHOS-RXN) PREDECESSORS - (PEPDEPHOS-RXN PEPSYNTH-RXN) PREDECESSORS - (PEPSYNTH-RXN PEPDEPHOS-RXN) PREDECESSORS - (F16ALDOLASE-RXN 6PFRUCTPHOS-RXN) PREDECESSORS - (TRIOSEPISOMERIZATION-RXN F16ALDOLASE-RXN) PREDECESSORS - (GAPOXNPHOSPHN-RXN TRIOSEPISOMERIZATION-RXN F16ALDOLASE-RXN) PREDECESSORS - (PHOSGLYPHOS-RXN GAPOXNPHOSPHN-RXN) PREDECESSORS - (3PGAREARR-RXN PHOSGLYPHOS-RXN) PREDECESSORS - (2PGADEHYDRAT-RXN 3PGAREARR-RXN) PREDECESSORS - (PEPDEPHOS-RXN 2PGADEHYDRAT-RXN) REACTION-LAYOUT - (F16BDEPHOS-RXN (:LEFT-PRIMARIES FRUCTOSE-16-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-6P)) REACTION-LAYOUT - (PEPSYNTH-RXN (:LEFT-PRIMARIES PYRUVATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE)) REACTION-LAYOUT - (6PFRUCTPHOS-RXN (:LEFT-PRIMARIES FRUCTOSE-6P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-16-DIPHOSPHATE)) REACTION-LAYOUT - (F16ALDOLASE-RXN (:LEFT-PRIMARIES FRUCTOSE-16-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GAP DIHYDROXY-ACETONE-PHOSPHATE)) REACTION-LAYOUT - (TRIOSEPISOMERIZATION-RXN (:LEFT-PRIMARIES GAP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DIHYDROXY-ACETONE-PHOSPHATE)) REACTION-LAYOUT - (GAPOXNPHOSPHN-RXN (:LEFT-PRIMARIES GAP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DPG)) REACTION-LAYOUT - (PHOSGLYPHOS-RXN (:LEFT-PRIMARIES G3P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DPG)) REACTION-LAYOUT - (3PGAREARR-RXN (:LEFT-PRIMARIES G3P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-PG)) REACTION-LAYOUT - (2PGADEHYDRAT-RXN (:LEFT-PRIMARIES 2-PG) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE)) REACTION-LAYOUT - (PEPDEPHOS-RXN (:LEFT-PRIMARIES PYRUVATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE)) REACTION-LIST - F16BDEPHOS-RXN REACTION-LIST - PEPSYNTH-RXN REACTION-LIST - 6PFRUCTPHOS-RXN REACTION-LIST - F16ALDOLASE-RXN REACTION-LIST - TRIOSEPISOMERIZATION-RXN REACTION-LIST - GAPOXNPHOSPHN-RXN REACTION-LIST - PHOSGLYPHOS-RXN REACTION-LIST - 3PGAREARR-RXN REACTION-LIST - 2PGADEHYDRAT-RXN REACTION-LIST - PEPDEPHOS-RXN SUPER-PATHWAYS - PWY-3801 // UNIQUE-ID - GLYCOLYSIS TYPES - GLYCOLYSIS-VARIANTS COMMON-NAME - glycolysis I CREDITS - O0-3 CREDITS - |ingraham| PATHWAY-LINKS - (FRUCTOSE-6P MANNCAT-PWY PWY-3861 SUCUTIL-PWY) PATHWAY-LINKS - (G3P SERSYN-PWY) PATHWAY-LINKS - (PYRUVATE |Amino-Acid-Biosynthesis| PYRUVDEHYD-PWY) PATHWAY-LINKS - (GLC-6-P PENTOSE-P-PWY (PWY-842 . :INCOMING)) PREDECESSORS - (F16BDEPHOS-RXN 6PFRUCTPHOS-RXN) PREDECESSORS - (6PFRUCTPHOS-RXN F16BDEPHOS-RXN) PREDECESSORS - (PEPDEPHOS-RXN PEPSYNTH-RXN) PREDECESSORS - (PEPSYNTH-RXN PEPDEPHOS-RXN) PREDECESSORS - (PEPDEPHOS-RXN 2PGADEHYDRAT-RXN) PREDECESSORS - (2PGADEHYDRAT-RXN 3PGAREARR-RXN) PREDECESSORS - (3PGAREARR-RXN PHOSGLYPHOS-RXN) PREDECESSORS - (PHOSGLYPHOS-RXN GAPOXNPHOSPHN-RXN) PREDECESSORS - (GAPOXNPHOSPHN-RXN TRIOSEPISOMERIZATION-RXN F16ALDOLASE-RXN) PREDECESSORS - (TRIOSEPISOMERIZATION-RXN F16ALDOLASE-RXN) PREDECESSORS - (F16ALDOLASE-RXN 6PFRUCTPHOS-RXN) PREDECESSORS - (6PFRUCTPHOS-RXN PGLUCISOM-RXN) PREDECESSORS - (PGLUCISOM-RXN) REACTION-LAYOUT - (F16BDEPHOS-RXN (:LEFT-PRIMARIES FRUCTOSE-16-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-6P)) REACTION-LAYOUT - (PEPSYNTH-RXN (:LEFT-PRIMARIES PYRUVATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE)) REACTION-LAYOUT - (PGLUCISOM-RXN (:LEFT-PRIMARIES GLC-6-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-6P)) REACTION-LAYOUT - (6PFRUCTPHOS-RXN (:LEFT-PRIMARIES FRUCTOSE-6P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-16-DIPHOSPHATE)) REACTION-LAYOUT - (F16ALDOLASE-RXN (:LEFT-PRIMARIES FRUCTOSE-16-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GAP DIHYDROXY-ACETONE-PHOSPHATE)) REACTION-LAYOUT - (TRIOSEPISOMERIZATION-RXN (:LEFT-PRIMARIES GAP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DIHYDROXY-ACETONE-PHOSPHATE)) REACTION-LAYOUT - (GAPOXNPHOSPHN-RXN (:LEFT-PRIMARIES GAP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DPG)) REACTION-LAYOUT - (PHOSGLYPHOS-RXN (:LEFT-PRIMARIES G3P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DPG)) REACTION-LAYOUT - (3PGAREARR-RXN (:LEFT-PRIMARIES G3P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-PG)) REACTION-LAYOUT - (2PGADEHYDRAT-RXN (:LEFT-PRIMARIES 2-PG) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE)) REACTION-LAYOUT - (PEPDEPHOS-RXN (:LEFT-PRIMARIES PYRUVATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE)) REACTION-LIST - F16BDEPHOS-RXN REACTION-LIST - PEPSYNTH-RXN REACTION-LIST - PGLUCISOM-RXN REACTION-LIST - 6PFRUCTPHOS-RXN REACTION-LIST - F16ALDOLASE-RXN REACTION-LIST - TRIOSEPISOMERIZATION-RXN REACTION-LIST - GAPOXNPHOSPHN-RXN REACTION-LIST - PHOSGLYPHOS-RXN REACTION-LIST - 3PGAREARR-RXN REACTION-LIST - 2PGADEHYDRAT-RXN REACTION-LIST - PEPDEPHOS-RXN SYNONYMS - Embden-Meyerhof pathway SYNONYMS - glucose degradation SYNONYMS - Embden-Meyerhof-Parnas pathway SYNONYMS - EMP pathway SYNONYMS - glycolysis (plastidic) // UNIQUE-ID - PWY-1042 TYPES - GLYCOLYSIS-VARIANTS COMMON-NAME - glycolysis IV (plant cytosol) CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |tissier| IN-PATHWAY - PWY-5464 KEY-REACTIONS - 1.2.1.9-RXN KEY-REACTIONS - 2.7.1.90-RXN PATHWAY-LINKS - (PYRUVATE PYRUVDEHYD-PWY) PATHWAY-LINKS - (FRUCTOSE-6P PWY-621) PREDECESSORS - (F16ALDOLASE-RXN 6PFRUCTPHOS-RXN) PREDECESSORS - (F16ALDOLASE-RXN 2.7.1.90-RXN) PREDECESSORS - (TRIOSEPISOMERIZATION-RXN F16ALDOLASE-RXN) PREDECESSORS - (GAPOXNPHOSPHN-RXN TRIOSEPISOMERIZATION-RXN) PREDECESSORS - (GAPOXNPHOSPHN-RXN F16ALDOLASE-RXN) PREDECESSORS - (PHOSGLYPHOS-RXN GAPOXNPHOSPHN-RXN) PREDECESSORS - (3PGAREARR-RXN PHOSGLYPHOS-RXN) PREDECESSORS - (2PGADEHYDRAT-RXN 3PGAREARR-RXN) PREDECESSORS - (PEPDEPHOS-RXN 2PGADEHYDRAT-RXN) PREDECESSORS - (1.2.1.9-RXN TRIOSEPISOMERIZATION-RXN) PREDECESSORS - (3PGAREARR-RXN 1.2.1.9-RXN) REACTION-LAYOUT - (1.2.1.9-RXN (:LEFT-PRIMARIES GAP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES G3P)) REACTION-LAYOUT - (PEPDEPHOS-RXN (:LEFT-PRIMARIES PYRUVATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE)) REACTION-LAYOUT - (2PGADEHYDRAT-RXN (:LEFT-PRIMARIES 2-PG) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE)) REACTION-LAYOUT - (3PGAREARR-RXN (:LEFT-PRIMARIES G3P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-PG)) REACTION-LAYOUT - (PHOSGLYPHOS-RXN (:LEFT-PRIMARIES G3P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DPG)) REACTION-LAYOUT - (GAPOXNPHOSPHN-RXN (:LEFT-PRIMARIES GAP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DPG)) REACTION-LAYOUT - (TRIOSEPISOMERIZATION-RXN (:LEFT-PRIMARIES GAP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DIHYDROXY-ACETONE-PHOSPHATE)) REACTION-LAYOUT - (F16ALDOLASE-RXN (:LEFT-PRIMARIES FRUCTOSE-16-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GAP DIHYDROXY-ACETONE-PHOSPHATE)) REACTION-LAYOUT - (2.7.1.90-RXN (:LEFT-PRIMARIES FRUCTOSE-6P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-16-DIPHOSPHATE)) REACTION-LAYOUT - (6PFRUCTPHOS-RXN (:LEFT-PRIMARIES FRUCTOSE-6P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-16-DIPHOSPHATE)) REACTION-LIST - 1.2.1.9-RXN REACTION-LIST - PEPDEPHOS-RXN REACTION-LIST - 2PGADEHYDRAT-RXN REACTION-LIST - 3PGAREARR-RXN REACTION-LIST - PHOSGLYPHOS-RXN REACTION-LIST - GAPOXNPHOSPHN-RXN REACTION-LIST - TRIOSEPISOMERIZATION-RXN REACTION-LIST - F16ALDOLASE-RXN REACTION-LIST - 2.7.1.90-RXN REACTION-LIST - 6PFRUCTPHOS-RXN SUPER-PATHWAYS - PWY-5464 SYNONYMS - glycolysis 4 // UNIQUE-ID - PWY-5271 TYPES - Abscisic-Acid-Degradation TYPES - Abscisic-Acid-Derivative-Biosynthesis COMMON-NAME - phaseic acid biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |tissier| PATHWAY-LINKS - (CPD-693 PWY-695) PREDECESSORS - (1.14.13.93-RXN) PREDECESSORS - (RXN-8153 1.14.13.93-RXN) PREDECESSORS - (RXN-8154 RXN-8153) PRIMARIES - (RXN-8154 (CPD-7725) (CPD-7726)) PRIMARIES - (RXN-8153 (CPD-7234) (CPD-7725)) PRIMARIES - (1.14.13.93-RXN (CPD-693) (CPD-7234)) REACTION-LAYOUT - (RXN-8154 (:LEFT-PRIMARIES CPD-7725) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7726)) REACTION-LAYOUT - (1.14.13.93-RXN (:LEFT-PRIMARIES CPD-693) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7234)) REACTION-LAYOUT - (RXN-8153 (:LEFT-PRIMARIES CPD-7234) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7725)) REACTION-LIST - RXN-8154 REACTION-LIST - 1.14.13.93-RXN REACTION-LIST - RXN-8153 SYNONYMS - abscisate degradation I SYNONYMS - abscisic acid degradation I SYNONYMS - ABA hydroxylation pathway SYNONYMS - abscisic acid hydroxylation pathway SYNONYMS - 8'-hydroxylation pathway // UNIQUE-ID - PWY-102 TYPES - Metabolic-Clusters TYPES - Inactivation TYPES - GIBBERELLINS-DEGRADATION COMMON-NAME - gibberellin inactivation CITATIONS - :EV-COMP-AINF:3497824358:liya PREDECESSORS - (RXN-886) PREDECESSORS - (RXN-991) PREDECESSORS - (RXN-947) PREDECESSORS - (RXN-292 RXN-6550) PREDECESSORS - (RXN-118 RXN-115) PREDECESSORS - (RXN-113) PREDECESSORS - (RXN-114 RXN-113) PREDECESSORS - (RXN-171) PREDECESSORS - (RXN-172 RXN-171) PRIMARIES - (RXN-886 (CPD-638) (CPD-885)) PRIMARIES - (RXN-991 (CPD-695) (CPD-477)) PRIMARIES - (RXN-947 (CPD1F-95) (CPD-475)) PRIMARIES - (RXN-292 (CPD-6224) (CPD-632)) PRIMARIES - (RXN-6550 (CPD1F-137) (CPD-6224)) PRIMARIES - (RXN1F-165 (CPD1F-134) (CPD1F-137)) PRIMARIES - (RXN-172 (CPD-482) (CPD-498)) PRIMARIES - (RXN-171 (CPD1F-134) (CPD-482)) PRIMARIES - (RXN1F-170 (CPD1F-140) (CPD1F-139)) PRIMARIES - (RXN-114 (CPD-236) (CPD-251)) PRIMARIES - (RXN-113 (CPD1F-140) (CPD-236)) PRIMARIES - (RXN-118 (CPD-204) (CPD-229)) PRIMARIES - (RXN-115 (CPD1F-139) (CPD-204)) REACTION-LAYOUT - (RXN-886 (:LEFT-PRIMARIES CPD-638) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-885)) REACTION-LAYOUT - (RXN-991 (:LEFT-PRIMARIES CPD-695) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-477)) REACTION-LAYOUT - (RXN-947 (:LEFT-PRIMARIES CPD1F-95) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-475)) REACTION-LAYOUT - (RXN-292 (:LEFT-PRIMARIES CPD-6224) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-632)) REACTION-LAYOUT - (RXN-6550 (:LEFT-PRIMARIES CPD1F-137) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6224)) REACTION-LAYOUT - (RXN-172 (:LEFT-PRIMARIES CPD-482) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-498)) REACTION-LAYOUT - (RXN-171 (:LEFT-PRIMARIES CPD1F-134) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-482)) REACTION-LAYOUT - (RXN-114 (:LEFT-PRIMARIES CPD-236) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-251)) REACTION-LAYOUT - (RXN-115 (:LEFT-PRIMARIES CPD1F-139) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-204)) REACTION-LAYOUT - (RXN-118 (:LEFT-PRIMARIES CPD-204) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-229)) REACTION-LAYOUT - (RXN-113 (:LEFT-PRIMARIES CPD1F-140) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-236)) REACTION-LIST - RXN-886 REACTION-LIST - RXN-991 REACTION-LIST - RXN-947 REACTION-LIST - RXN-292 REACTION-LIST - RXN-6550 REACTION-LIST - RXN-172 REACTION-LIST - RXN-171 REACTION-LIST - RXN-114 REACTION-LIST - RXN-115 REACTION-LIST - RXN-118 REACTION-LIST - RXN-113 SYNONYMS - gibberellin 2β-hydroxylation // UNIQUE-ID - PWY-2841 TYPES - CYTOKININS-DEGRADATION TYPES - Metabolic-Clusters COMMON-NAME - cytokinins degradation CITATIONS - :EV-COMP-AINF:3497824358:liya PREDECESSORS - (RXN-4681) PREDECESSORS - (RXN-4662) PREDECESSORS - (RXN-4661) PREDECESSORS - (RXN-4641) PREDECESSORS - (RXN-4621) PRIMARIES - (RXN-4621 (CPD-4209) (PRENAL ADENINE)) PRIMARIES - (RXN-4641 (CPD-4207) (ADENOSINE PRENAL)) PRIMARIES - (RXN-4661 (CPD-4210) (ADENINE CPD-4483)) PRIMARIES - (RXN-4662 (CPD-4441) (CPD-4482 ADENINE)) PRIMARIES - (RXN-4681 (CPD-4208) (ADENOSINE CPD-4483)) REACTION-LAYOUT - (RXN-4681 (:LEFT-PRIMARIES CPD-4208) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4483 ADENOSINE)) REACTION-LAYOUT - (RXN-4662 (:LEFT-PRIMARIES CPD-4441) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ADENINE CPD-4482)) REACTION-LAYOUT - (RXN-4661 (:LEFT-PRIMARIES CPD-4210) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4483 ADENINE)) REACTION-LAYOUT - (RXN-4641 (:LEFT-PRIMARIES CPD-4207) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PRENAL ADENOSINE)) REACTION-LAYOUT - (RXN-4621 (:LEFT-PRIMARIES CPD-4209) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ADENINE PRENAL)) REACTION-LIST - RXN-4681 REACTION-LIST - RXN-4662 REACTION-LIST - RXN-4661 REACTION-LIST - RXN-4641 REACTION-LIST - RXN-4621 SYNONYMS - Cytokinins oxidation // UNIQUE-ID - PWY-4261 TYPES - GLYCEROL-DEG TYPES - Fatty-Acid-and-Lipid-Degradation COMMON-NAME - glycerol degradation IV CITATIONS - :EV-COMP-AINF:3497824357:liya PATHWAY-LINKS - (DIHYDROXY-ACETONE-PHOSPHATE GLUCONEO-PWY GLYCOLYSIS-VARIANTS) PREDECESSORS - (RXN-9927 GLYCEROL-KIN-RXN) PRIMARIES - (RXN-9927 (GLYCEROL-3P) (DIHYDROXY-ACETONE-PHOSPHATE)) PRIMARIES - (GLYCEROL-KIN-RXN (GLYCEROL) (GLYCEROL-3P)) REACTION-LAYOUT - (RXN-9927 (:LEFT-PRIMARIES GLYCEROL-3P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROXY-ACETONE-PHOSPHATE)) REACTION-LAYOUT - (GLYCEROL-KIN-RXN (:LEFT-PRIMARIES GLYCEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLYCEROL-3P)) REACTION-LIST - RXN-9927 REACTION-LIST - GLYCEROL-KIN-RXN // UNIQUE-ID - LIPASYN-PWY TYPES - Metabolic-Clusters TYPES - Fatty-Acid-and-Lipid-Degradation COMMON-NAME - phospholipases CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - |zhang| PATHWAY-LINKS - (INOSITOL-1-4-5-TRISPHOSPHATE PWY-4541) PRIMARIES - (3.1.4.11-RXN (PHOSPHATIDYL-MYO-INOSITOL-45-BISPHOSPHA) (DIACYLGLYCEROL)) PRIMARIES - (PHOSPHOLIPASE-C-RXN (PHOSPHATIDYLCHOLINE) (DIACYLGLYCEROL)) PRIMARIES - (PHOSPHOLIPASE-A2-RXN (PHOSPHATIDYLCHOLINE) (|1-Acylglycero-Phosphocholines| |Fatty-Acids|)) PRIMARIES - (PHOSPHOLIPASE-A1-RXN (PHOSPHATIDYLCHOLINE) (|2-Acylglycero-Phosphocholines|)) PRIMARIES - (PHOSCHOL-RXN (PHOSPHATIDYLCHOLINE) (L-PHOSPHATIDATE)) REACTION-LAYOUT - (PHOSPHOLIPASE-C-RXN (:LEFT-PRIMARIES PHOSPHATIDYLCHOLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIACYLGLYCEROL)) REACTION-LAYOUT - (PHOSPHOLIPASE-A1-RXN (:LEFT-PRIMARIES PHOSPHATIDYLCHOLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |2-Acylglycero-Phosphocholines|)) REACTION-LAYOUT - (PHOSPHOLIPASE-A2-RXN (:LEFT-PRIMARIES PHOSPHATIDYLCHOLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |1-Acylglycero-Phosphocholines|)) REACTION-LAYOUT - (PHOSCHOL-RXN (:LEFT-PRIMARIES PHOSPHATIDYLCHOLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-PHOSPHATIDATE)) REACTION-LAYOUT - (3.1.4.11-RXN (:LEFT-PRIMARIES PHOSPHATIDYL-MYO-INOSITOL-45-BISPHOSPHA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INOSITOL-1-4-5-TRISPHOSPHATE DIACYLGLYCEROL)) REACTION-LIST - PHOSPHOLIPASE-C-RXN REACTION-LIST - PHOSPHOLIPASE-A1-RXN REACTION-LIST - PHOSPHOLIPASE-A2-RXN REACTION-LIST - PHOSCHOL-RXN REACTION-LIST - 3.1.4.11-RXN SYNONYMS - phospholipase pathway // UNIQUE-ID - LIPAS-PWY TYPES - Fatty-Acid-and-Lipid-Degradation COMMON-NAME - triacylglycerol degradation CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |Iourovitski| PREDECESSORS - (RXN-1602 TRIACYLGLYCEROL-LIPASE-RXN) PREDECESSORS - (RXN-1603 RXN-1602) PREDECESSORS - (3.1.1.23-RXN RXN-1603) PRIMARIES - (3.1.1.23-RXN (CPD-504) (GLYCEROL)) PRIMARIES - (RXN-1602 (|Diacylglycerides|) (CPD-409)) REACTION-LAYOUT - (RXN-1603 (:LEFT-PRIMARIES CPD-409) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-504)) REACTION-LAYOUT - (RXN-1602 (:LEFT-PRIMARIES |Diacylglycerides|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-409)) REACTION-LAYOUT - (3.1.1.23-RXN (:LEFT-PRIMARIES CPD-504) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLYCEROL)) REACTION-LAYOUT - (TRIACYLGLYCEROL-LIPASE-RXN (:LEFT-PRIMARIES |Triacylglycerols|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Diacylglycerides|)) REACTION-LIST - RXN-1603 REACTION-LIST - RXN-1602 REACTION-LIST - 3.1.1.23-RXN REACTION-LIST - TRIACYLGLYCEROL-LIPASE-RXN SYNONYMS - triacylglyceride degradation SYNONYMS - triacylglycerol hydrolysis SYNONYMS - lipolysis // UNIQUE-ID - PWY-5136 TYPES - Fatty-Acid-Degradation COMMON-NAME - fatty acid β-oxidation II (core pathway) CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |zhang| PATHWAY-LINKS - (TRANS-D2-ENOYL-COA PWY-5137) PATHWAY-LINKS - (L-3-HYDROXYACYL-COA PWY-5138) POLYMERIZATION-LINKS - (ACYL-COA KETOACYLCOATHIOL-RXN ACYL-COA-OXIDASE-RXN) PREDECESSORS - (ENOYL-COA-HYDRAT-RXN ACYL-COA-OXIDASE-RXN) PREDECESSORS - (OHACYL-COA-DEHYDROG-RXN ENOYL-COA-HYDRAT-RXN) PREDECESSORS - (ACYL-COA-OXIDASE-RXN ACYLCOASYN-RXN) PREDECESSORS - (KETOACYLCOATHIOL-RXN OHACYL-COA-DEHYDROG-RXN) PRIMARIES - (OHACYL-COA-DEHYDROG-RXN (L-3-HYDROXYACYL-COA) (3-KETOACYL-COA)) PRIMARIES - (KETOACYLCOATHIOL-RXN (3-KETOACYL-COA) (ACYL-COA)) PRIMARIES - (ENOYL-COA-HYDRAT-RXN (TRANS-D2-ENOYL-COA) (L-3-HYDROXYACYL-COA)) PRIMARIES - (ACYLCOASYN-RXN (|Fatty-Acids|) (ACYL-COA)) PRIMARIES - (ACYL-COA-OXIDASE-RXN (ACYL-COA) (TRANS-D2-ENOYL-COA)) PRIMARIES - (CATAL-RXN NIL NIL) REACTION-LAYOUT - (KETOACYLCOATHIOL-RXN (:LEFT-PRIMARIES ACETYL-COA |Saturated-Fatty-Acyl-CoA|) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 3-KETOACYL-COA)) REACTION-LAYOUT - (OHACYL-COA-DEHYDROG-RXN (:LEFT-PRIMARIES L-3-HYDROXYACYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-KETOACYL-COA)) REACTION-LAYOUT - (ENOYL-COA-HYDRAT-RXN (:LEFT-PRIMARIES L-3-HYDROXYACYL-COA) (:DIRECTION :R2L) (:RIGHT-PRIMARIES TRANS-D2-ENOYL-COA)) REACTION-LAYOUT - (ACYL-COA-OXIDASE-RXN (:LEFT-PRIMARIES ACYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TRANS-D2-ENOYL-COA)) REACTION-LAYOUT - (ACYLCOASYN-RXN (:LEFT-PRIMARIES |Fatty-Acids|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Saturated-Fatty-Acyl-CoA|)) REACTION-LIST - KETOACYLCOATHIOL-RXN REACTION-LIST - OHACYL-COA-DEHYDROG-RXN REACTION-LIST - ENOYL-COA-HYDRAT-RXN REACTION-LIST - ACYL-COA-OXIDASE-RXN REACTION-LIST - ACYLCOASYN-RXN SYNONYMS - fatty acid degradation // UNIQUE-ID - PWY-5137 TYPES - Fatty-Acid-Degradation COMMON-NAME - fatty acid β-oxidation III (unsaturated, odd number) CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |zhang| PATHWAY-LINKS - (TRANS-D2-ENOYL-COA PWY-5136) PREDECESSORS - (ENOYL-COA-DELTA-ISOM-RXN) PRIMARIES - (OHACYL-COA-DEHYDROG-RXN (L-3-HYDROXYACYL-COA) (3-KETOACYL-COA)) PRIMARIES - (KETOACYLCOATHIOL-RXN (3-KETOACYL-COA) (ACYL-COA)) PRIMARIES - (ENOYL-COA-HYDRAT-RXN (TRANS-D2-ENOYL-COA) (L-3-HYDROXYACYL-COA)) PRIMARIES - (ENOYL-COA-DELTA-ISOM-RXN (CIS-DELTA3-ENOYL-COA) (TRANS-D2-ENOYL-COA)) REACTION-LAYOUT - (ENOYL-COA-DELTA-ISOM-RXN (:LEFT-PRIMARIES CIS-DELTA3-ENOYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TRANS-D2-ENOYL-COA)) REACTION-LIST - ENOYL-COA-DELTA-ISOM-RXN // UNIQUE-ID - PWY-5138 TYPES - Fatty-Acid-Degradation COMMON-NAME - fatty acid β-oxidation IV (unsaturated, even number) CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - SRI CREDITS - |caspi| CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |zhang| PATHWAY-LINKS - (L-3-HYDROXYACYL-COA PWY-5136) PATHWAY-LINKS - (ACYL-COA PWY-5136) PREDECESSORS - (ENOYL-COA-HYDRAT-RXN RXN-7699) PREDECESSORS - (RXN-7699 RXN-7838) PREDECESSORS - (OHBUTYRYL-COA-EPIM-RXN RXN-7838) PREDECESSORS - (ENOYL-COA-HYDRAT-RXN RXN-7836) PREDECESSORS - (RXN-7836 RXN-7835) PRIMARIES - (KETOACYLCOATHIOL-RXN (3-KETOACYL-COA) (ACYL-COA)) PRIMARIES - (OHACYL-COA-DEHYDROG-RXN (L-3-HYDROXYACYL-COA) (3-KETOACYL-COA)) PRIMARIES - (RXN-7838 (|Cis-2-enoyl-CoAs|) (D-3-HYDROXYACYL-COA)) PRIMARIES - (RXN-7699 (D-3-HYDROXYACYL-COA) (TRANS-D2-ENOYL-COA)) PRIMARIES - (RXN-7835 (|2-trans-4-cis-dienoyl-CoAs|) (|Trans-3-enoyl-CoAs|)) REACTION-LAYOUT - (RXN-7699 (:LEFT-PRIMARIES D-3-HYDROXYACYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TRANS-D2-ENOYL-COA)) REACTION-LAYOUT - (RXN-7835 (:LEFT-PRIMARIES |2-trans-4-cis-dienoyl-CoAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Trans-3-enoyl-CoAs|)) REACTION-LAYOUT - (ENOYL-COA-HYDRAT-RXN (:LEFT-PRIMARIES L-3-HYDROXYACYL-COA) (:DIRECTION :R2L) (:RIGHT-PRIMARIES TRANS-D2-ENOYL-COA)) REACTION-LAYOUT - (OHBUTYRYL-COA-EPIM-RXN (:LEFT-PRIMARIES D-3-HYDROXYACYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-3-HYDROXYACYL-COA)) REACTION-LAYOUT - (RXN-7838 (:LEFT-PRIMARIES |Cis-2-enoyl-CoAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES D-3-HYDROXYACYL-COA)) REACTION-LAYOUT - (RXN-7836 (:LEFT-PRIMARIES |Trans-3-enoyl-CoAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TRANS-D2-ENOYL-COA)) REACTION-LIST - RXN-7699 REACTION-LIST - RXN-7835 REACTION-LIST - ENOYL-COA-HYDRAT-RXN REACTION-LIST - OHBUTYRYL-COA-EPIM-RXN REACTION-LIST - RXN-7838 REACTION-LIST - RXN-7836 // UNIQUE-ID - 2PHENDEG-PWY TYPES - Phenylethylamine-Degradation TYPES - AMINE-DEG COMMON-NAME - phenylethylamine degradation CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - O-18 CREDITS - |pellegrini-toole| PREDECESSORS - (PHENDEHYD-RXN AMINEPHEN-RXN) REACTION-LAYOUT - (PHENDEHYD-RXN (:LEFT-PRIMARIES PHENYLACETALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHENYLACETATE)) REACTION-LAYOUT - (AMINEPHEN-RXN (:LEFT-PRIMARIES PHENYLETHYLAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHENYLACETALDEHYDE)) REACTION-LIST - PHENDEHYD-RXN REACTION-LIST - AMINEPHEN-RXN // UNIQUE-ID - PWY-5704 TYPES - Urea-Degradation COMMON-NAME - urea degradation II CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |caspi| PREDECESSORS - (UREASE-RXN) PRIMARIES - (UREASE-RXN NIL (AMMONIA)) PRIMARIES - (ALLOPHANATE-HYDROLASE-RXN NIL (AMMONIA)) PRIMARIES - (ALLANTOICASE-RXN NIL (UREA CPD-1091)) PRIMARIES - (UREIDOGLYCOLATE-LYASE-RXN (CPD-1091) NIL) REACTION-LAYOUT - (UREASE-RXN (:LEFT-PRIMARIES UREA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AMMONIA)) REACTION-LIST - UREASE-RXN // UNIQUE-ID - PWY-5698 TYPES - Allantoin-degradation COMMON-NAME - allantoin degradation to ureidoglycolate II (ammonia producing) CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - |caspi| CREDITS - SRI CREDITS - |keseler| IN-PATHWAY - PWY0-41 PREDECESSORS - (ALLANTOINASE-RXN RXN0-5473) PREDECESSORS - (URUR-RXN ALLANTOATE-DEIMINASE-RXN) PREDECESSORS - (ALLANTOATE-DEIMINASE-RXN ALLANTOINASE-RXN) PRIMARIES - (UREIDOGLYCOLATE-LYASE-RXN (CPD-1091) (GLYOX)) REACTION-LAYOUT - (RXN0-5473 (:LEFT-PRIMARIES URATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES S-ALLANTOIN)) REACTION-LAYOUT - (URUR-RXN (:LEFT-PRIMARIES CPD-598) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-1091)) REACTION-LAYOUT - (ALLANTOATE-DEIMINASE-RXN (:LEFT-PRIMARIES ALLANTOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-598)) REACTION-LAYOUT - (ALLANTOINASE-RXN (:LEFT-PRIMARIES S-ALLANTOIN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALLANTOATE)) REACTION-LIST - RXN0-5473 REACTION-LIST - URUR-RXN REACTION-LIST - ALLANTOATE-DEIMINASE-RXN REACTION-LIST - ALLANTOINASE-RXN SUPER-PATHWAYS - PWY0-41 // UNIQUE-ID - PWY0-1313 TYPES - CARBOXYLATES-DEG COMMON-NAME - acetate conversion to acetyl-CoA CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |caspi| PREDECESSORS - (ACETATE--COA-LIGASE-RXN) PRIMARIES - (ACETATE--COA-LIGASE-RXN (ACET) (ACETYL-COA)) REACTION-LAYOUT - (ACETATE--COA-LIGASE-RXN (:LEFT-PRIMARIES ACET) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ACETYL-COA)) REACTION-LIST - ACETATE--COA-LIGASE-RXN // UNIQUE-ID - PWY-5074 TYPES - CARBOXYLATES-DEG COMMON-NAME - mevalonate degradation CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (MEVALONATE PWY-922) PREDECESSORS - (HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN HYDROXYMETHYLGLUTARYL-COA-REDUCTASE-RXN) PRIMARIES - (HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN NIL (3-KETOBUTYRATE)) PRIMARIES - (HYDROXYMETHYLGLUTARYL-COA-REDUCTASE-RXN (MEVALONATE) NIL) REACTION-LAYOUT - (HYDROXYMETHYLGLUTARYL-COA-REDUCTASE-RXN (:LEFT-PRIMARIES MEVALONATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-HYDROXY-3-METHYL-GLUTARYL-COA)) REACTION-LAYOUT - (HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN (:LEFT-PRIMARIES 3-HYDROXY-3-METHYL-GLUTARYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-KETOBUTYRATE)) REACTION-LIST - HYDROXYMETHYLGLUTARYL-COA-REDUCTASE-RXN REACTION-LIST - HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN // UNIQUE-ID - PWY-5535 TYPES - Acetate-Formation COMMON-NAME - acetate formation from acetyl-CoA II CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - SRI CREDITS - |caspi| PREDECESSORS - (ACETATE--COA-LIGASE-ADP-FORMING-RXN) PRIMARIES - (ACETATE--COA-LIGASE-ADP-FORMING-RXN (ACETYL-COA) (ACET)) PRIMARIES - (ALANINE-AMINOTRANSFERASE-RXN (PYRUVATE) (L-ALPHA-ALANINE)) PRIMARIES - (PYRUFLAVREDUCT-RXN (PYRUVATE) (ACETYL-COA)) PRIMARIES - (F16ALDOLASE-RXN NIL (DIHYDROXY-ACETONE-PHOSPHATE GAP)) PRIMARIES - (TRIOSEPISOMERIZATION-RXN (GAP) (DIHYDROXY-ACETONE-PHOSPHATE)) REACTION-LAYOUT - (ACETATE--COA-LIGASE-ADP-FORMING-RXN (:LEFT-PRIMARIES ACET) (:DIRECTION :R2L) (:RIGHT-PRIMARIES ACETYL-COA)) REACTION-LIST - ACETATE--COA-LIGASE-ADP-FORMING-RXN // UNIQUE-ID - GLYCEROLMETAB-PWY TYPES - GLYCEROL-DEG COMMON-NAME - glycerol degradation V CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - O-18 CREDITS - |riley| PREDECESSORS - (GLYCDEH-RXN) REACTION-LAYOUT - (GLYCDEH-RXN (:LEFT-PRIMARIES GLYCEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROXYACETONE)) REACTION-LIST - GLYCDEH-RXN // UNIQUE-ID - PWY66-21 TYPES - Ethanol-Degradation COMMON-NAME - oxidative ethanol degradation I CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |wagg| PREDECESSORS - (ACETATE--COA-LIGASE-RXN RXN66-3) PREDECESSORS - (RXN66-3 ALCOHOL-DEHYDROG-RXN) PRIMARIES - (ACETATE--COA-LIGASE-ADP-FORMING-RXN (ACET) (ACETYL-COA)) PRIMARIES - (ACETATE--COA-LIGASE-RXN (ACET) (ACETYL-COA)) PRIMARIES - (ACETYL-COA-HYDROLASE-RXN (ACET) (ACETYL-COA)) REACTION-LAYOUT - (ACETATE--COA-LIGASE-RXN (:LEFT-PRIMARIES ACET) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ACETYL-COA)) REACTION-LAYOUT - (RXN66-3 (:LEFT-PRIMARIES ACETALD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ACET)) REACTION-LAYOUT - (ALCOHOL-DEHYDROG-RXN (:LEFT-PRIMARIES ACETALD) (:DIRECTION :R2L) (:RIGHT-PRIMARIES ETOH)) REACTION-LIST - ACETATE--COA-LIGASE-RXN REACTION-LIST - RXN66-3 REACTION-LIST - ALCOHOL-DEHYDROG-RXN // UNIQUE-ID - PWY-5874 TYPES - Heme-Degradation COMMON-NAME - heme degradation CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (BILIRUBIN "excretion in the bile") PREDECESSORS - (BILIVERDIN-REDUCTASE-RXN HEME-OXYGENASE-DECYCLIZING-RXN) REACTION-LAYOUT - (BILIVERDIN-REDUCTASE-RXN (:LEFT-PRIMARIES BILIRUBIN) (:DIRECTION :R2L) (:RIGHT-PRIMARIES BILIVERDINE)) REACTION-LAYOUT - (HEME-OXYGENASE-DECYCLIZING-RXN (:LEFT-PRIMARIES PROTOHEME) (:DIRECTION :L2R) (:RIGHT-PRIMARIES BILIVERDINE)) REACTION-LIST - BILIVERDIN-REDUCTASE-RXN REACTION-LIST - HEME-OXYGENASE-DECYCLIZING-RXN // UNIQUE-ID - PWY-5098 TYPES - Chlorophyll-A-Degradation COMMON-NAME - chlorophyll a degradation CITATIONS - :EV-COMP-AINF:3497824356:liya PREDECESSORS - (3.1.1.82-RXN RXN-7739) PREDECESSORS - (RXN-7738) PREDECESSORS - (RXN-7739 RXN-7738) PREDECESSORS - (RXN-7740 RXN-7739) PREDECESSORS - (RXN-7741 RXN-7740) PRIMARIES - (3.1.1.82-RXN NIL (CPD-10296)) PRIMARIES - (RXN-7738 (CHLOROPHYLL-A) (PHYTOL CHLOROPHYLLIDE-A)) PRIMARIES - (RXN-7741 (CPD-7063) (CPD-7064)) PRIMARIES - (RXN-7740 (CPD-7061) (CPD-7063)) PRIMARIES - (RXN-7739 (CHLOROPHYLLIDE-A) (CPD-7061)) REACTION-LAYOUT - (3.1.1.82-RXN (:LEFT-PRIMARIES CPD-7061) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-10296)) REACTION-LAYOUT - (RXN-7740 (:LEFT-PRIMARIES CPD-7061) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7063)) REACTION-LAYOUT - (RXN-7739 (:LEFT-PRIMARIES CHLOROPHYLLIDE-A) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7061)) REACTION-LAYOUT - (RXN-7741 (:LEFT-PRIMARIES CPD-7064) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CPD-7063)) REACTION-LAYOUT - (RXN-7738 (:LEFT-PRIMARIES CHLOROPHYLL-A) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHYTOL CHLOROPHYLLIDE-A)) REACTION-LIST - 3.1.1.82-RXN REACTION-LIST - RXN-7740 REACTION-LIST - RXN-7739 REACTION-LIST - RXN-7741 REACTION-LIST - RXN-7738 // UNIQUE-ID - PWY-5988 TYPES - Protein-Degradation COMMON-NAME - wound-induced proteolysis I CITATIONS - :EV-COMP-AINF:3497824359:liya CREDITS - O-27 CREDITS - |pujar| PRIMARIES - (3.4.11.1-RXN (|Peptides|) (|Amino-Acids-20|)) REACTION-LAYOUT - (3.4.11.1-RXN (:LEFT-PRIMARIES |Peptides|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Peptides| |Amino-Acids-20|)) REACTION-LIST - 3.4.11.1-RXN // UNIQUE-ID - PWY-6018 TYPES - Protein-Degradation COMMON-NAME - seed germination protein turnover CITATIONS - :EV-COMP-AINF:3497824359:liya CREDITS - O-27 CREDITS - |pujar| POLYMERIZATION-LINKS - (|Peptides| 3.4.11.1-RXN 3.4.11.1-RXN) PREDECESSORS - (3.4.11.1-RXN) PRIMARIES - (3.4.11.1-RXN (WATER |Peptides|) (|Peptides|)) REACTION-LAYOUT - (3.4.11.1-RXN (:LEFT-PRIMARIES WATER |Peptides|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Peptides|)) REACTION-LIST - 3.4.11.1-RXN // UNIQUE-ID - P401-PWY TYPES - Other-Degradation COMMON-NAME - cyanide degradation CITATIONS - :EV-COMP-AINF:3497824356:liya PREDECESSORS - (L-3-CYANOALANINE-SYNTHASE-RXN) PRIMARIES - (L-3-CYANOALANINE-SYNTHASE-RXN (HCN) NIL) REACTION-LAYOUT - (L-3-CYANOALANINE-SYNTHASE-RXN (:LEFT-PRIMARIES HCN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-603)) REACTION-LIST - L-3-CYANOALANINE-SYNTHASE-RXN // UNIQUE-ID - PWY-862 TYPES - CARBO-BIOSYNTHESIS TYPES - POLYSACCHARIDES-DEG COMMON-NAME - fructan degradation CITATIONS - :EV-COMP-AINF:3497824358:liya REACTION-LAYOUT - (RXN-1863 (:LEFT-PRIMARIES CPD-2281) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 6G-KESTOTETRAOSE FRU)) REACTION-LAYOUT - (RXN-1841 (:LEFT-PRIMARIES 1-KESTOTRIOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SUCROSE FRU)) REACTION-LIST - RXN-1863 REACTION-LIST - RXN-1841 SYNONYMS - fructan mobilization // UNIQUE-ID - PWY-842 TYPES - CARBO-BIOSYNTHESIS TYPES - Starch-Degradation COMMON-NAME - starch degradation CITATIONS - :EV-COMP-AINF:3497824358:liya PATHWAY-LINKS - (GLC-6-P PENTOSE-P-PWY GLYCOLYSIS) PREDECESSORS - (RXN-1685 RXN-1828) PREDECESSORS - (RXN-1824 RXN-1823) PREDECESSORS - (RXN-1825 RXN-1824) PREDECESSORS - (RXN-1826 RXN-1824) PREDECESSORS - (RXN-1828 RXN-1825) PREDECESSORS - (RXN-2141 RXN-1827) PREDECESSORS - (RXN-1685 RXN-2141) PREDECESSORS - (PHOSPHOGLUCMUT-RXN RXN-1826) PREDECESSORS - (GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN RXN-1685) PREDECESSORS - (GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN PHOSPHOGLUCMUT-RXN) PRIMARIES - (RXN-2141 (ALPHA-MALTOSE) (ALPHA-GLUCOSE)) PRIMARIES - (RXN-1827 (|1-4-alpha-D-Glucan|) (ALPHA-MALTOSE)) PRIMARIES - (GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN (ALPHA-GLC-6-P) (GLC-6-P)) PRIMARIES - (PHOSPHOGLUCMUT-RXN (GLC-1-P) (ALPHA-GLC-6-P)) PRIMARIES - (RXN-1685 (ALPHA-GLUCOSE) (ALPHA-GLC-6-P)) REACTION-LAYOUT - (GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN (:LEFT-PRIMARIES ALPHA-GLC-6-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLC-6-P)) REACTION-LAYOUT - (PHOSPHOGLUCMUT-RXN (:LEFT-PRIMARIES GLC-1-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALPHA-GLC-6-P)) REACTION-LAYOUT - (RXN-1685 (:LEFT-PRIMARIES ALPHA-GLUCOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALPHA-GLC-6-P)) REACTION-LAYOUT - (RXN-2141 (:LEFT-PRIMARIES ALPHA-MALTOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALPHA-GLUCOSE)) REACTION-LAYOUT - (RXN-1828 (:LEFT-PRIMARIES ALPHA-GLUCOSE |Long-linear-glucans|) (:DIRECTION :R2L) (:RIGHT-PRIMARIES |Short-glucans| |Short-glucans|)) REACTION-LAYOUT - (RXN-1827 (:LEFT-PRIMARIES |1-4-alpha-D-Glucan|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALPHA-MALTOSE |1-4-alpha-D-Glucan|)) REACTION-LAYOUT - (RXN-1826 (:LEFT-PRIMARIES |Long-linear-glucans|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLC-1-P)) REACTION-LAYOUT - (RXN-1825 (:LEFT-PRIMARIES |Long-linear-glucans|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Short-glucans|)) REACTION-LAYOUT - (RXN-1824 (:LEFT-PRIMARIES |Large-branched-glucans|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Long-linear-glucans|)) REACTION-LAYOUT - (RXN-1823 (:LEFT-PRIMARIES |Starch|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Large-branched-glucans|)) REACTION-LIST - GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN REACTION-LIST - PHOSPHOGLUCMUT-RXN REACTION-LIST - RXN-1685 REACTION-LIST - RXN-2141 REACTION-LIST - RXN-1828 REACTION-LIST - RXN-1827 REACTION-LIST - RXN-1826 REACTION-LIST - RXN-1825 REACTION-LIST - RXN-1824 REACTION-LIST - RXN-1823 SYNONYMS - starch mobilization // UNIQUE-ID - PWY-4021 TYPES - Betaine-Biosynthesis TYPES - Amino-Acid-Degradation COMMON-NAME - β-alanine betaine biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya PREDECESSORS - (RXN-6464 RXN-6462) PREDECESSORS - (RXN-6462 RXN-6461) PREDECESSORS - (RXN-6461) PRIMARIES - (RXN-6464 (CPD-6142) (CPD-6181)) PRIMARIES - (RXN-6462 (CPD-6141) (CPD-6142)) PRIMARIES - (RXN-6461 (B-ALANINE) (CPD-6141)) REACTION-LAYOUT - (RXN-6461 (:LEFT-PRIMARIES B-ALANINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6141)) REACTION-LAYOUT - (RXN-6462 (:LEFT-PRIMARIES CPD-6141) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6142)) REACTION-LAYOUT - (RXN-6464 (:LEFT-PRIMARIES CPD-6142) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6181)) REACTION-LIST - RXN-6461 REACTION-LIST - RXN-6462 REACTION-LIST - RXN-6464 // UNIQUE-ID - ALANINE-DEG3-PWY TYPES - ALANINE-DEG COMMON-NAME - alanine degradation III CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |fulcher| PATHWAY-LINKS - (PYRUVATE PYRUVDEHYD-PWY) PREDECESSORS - (ALANINE-AMINOTRANSFERASE-RXN) PRIMARIES - (ALANINE-AMINOTRANSFERASE-RXN (L-ALPHA-ALANINE) (PYRUVATE)) PRIMARIES - (D-ALANINE-AMINOTRANSFERASE-RXN (D-ALANINE) (PYRUVATE)) REACTION-LAYOUT - (ALANINE-AMINOTRANSFERASE-RXN (:LEFT-PRIMARIES L-ALPHA-ALANINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PYRUVATE)) REACTION-LIST - ALANINE-AMINOTRANSFERASE-RXN // UNIQUE-ID - PWY0-823 TYPES - ARGININE-DEG TYPES - Polyamine-Biosynthesis COMMON-NAME - arginine degradation III (arginine decarboxylase/agmatinase pathway) CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - |caspi| CREDITS - SRI CREDITS - |arnaud| PREDECESSORS - (AGMATIN-RXN ARGDECARBOX-RXN) PRIMARIES - (AGMATIN-RXN NIL (PUTRESCINE)) REACTION-LAYOUT - (AGMATIN-RXN (:LEFT-PRIMARIES AGMATHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PUTRESCINE)) REACTION-LAYOUT - (ARGDECARBOX-RXN (:LEFT-PRIMARIES ARG) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AGMATHINE)) REACTION-LIST - AGMATIN-RXN REACTION-LIST - ARGDECARBOX-RXN // UNIQUE-ID - ARG-PRO-PWY TYPES - PROLINE-SYN TYPES - ARGININE-DEG COMMON-NAME - arginine degradation VI (arginase 2 pathway) CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - |caspi| CREDITS - SRI CREDITS - |hying| PATHWAY-LINKS - (PRO PROUT-PWY) PREDECESSORS - (ORNITHINE-GLU-AMINOTRANSFORASE-RXN ARGINASE-RXN) PREDECESSORS - (SPONTPRO-RXN ORNITHINE-GLU-AMINOTRANSFORASE-RXN) PREDECESSORS - (PYRROLINECARBREDUCT-RXN SPONTPRO-RXN) REACTION-LAYOUT - (SPONTPRO-RXN (:LEFT-PRIMARIES L-GLUTAMATE_GAMMA-SEMIALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-DELTA1-PYRROLINE_5-CARBOXYLATE)) REACTION-LAYOUT - (ARGINASE-RXN (:LEFT-PRIMARIES ARG) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-ORNITHINE)) REACTION-LAYOUT - (ORNITHINE-GLU-AMINOTRANSFORASE-RXN (:LEFT-PRIMARIES L-ORNITHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-GLUTAMATE_GAMMA-SEMIALDEHYDE)) REACTION-LAYOUT - (PYRROLINECARBREDUCT-RXN (:LEFT-PRIMARIES PRO) (:DIRECTION :R2L) (:RIGHT-PRIMARIES L-DELTA1-PYRROLINE_5-CARBOXYLATE)) REACTION-LIST - SPONTPRO-RXN REACTION-LIST - ARGINASE-RXN REACTION-LIST - ORNITHINE-GLU-AMINOTRANSFORASE-RXN REACTION-LIST - PYRROLINECARBREDUCT-RXN SYNONYMS - proline biosynthesis from arginine // UNIQUE-ID - ARGDEG-V-PWY TYPES - ARGININE-DEG COMMON-NAME - arginine degradation X (arginine monooxygenase pathway) CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - |caspi| CREDITS - SRI CREDITS - |hying| PREDECESSORS - (GUANIDINOBUTANAMIDE-NH3-RXN ARGININE-2-MONOOXYGENASE-RXN) PREDECESSORS - (GUANIDINOBUTYRASE-RXN GUANIDINOBUTANAMIDE-NH3-RXN) PRIMARIES - (GUANIDINOBUTYRASE-RXN NIL (4-AMINO-BUTYRATE)) REACTION-LAYOUT - (ARGININE-2-MONOOXYGENASE-RXN (:LEFT-PRIMARIES ARG) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 4-GUANIDO-BUTYRAMIDE)) REACTION-LAYOUT - (GUANIDINOBUTYRASE-RXN (:LEFT-PRIMARIES CPD-592) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 4-AMINO-BUTYRATE)) REACTION-LAYOUT - (GUANIDINOBUTANAMIDE-NH3-RXN (:LEFT-PRIMARIES 4-GUANIDO-BUTYRAMIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-592)) REACTION-LIST - ARGININE-2-MONOOXYGENASE-RXN REACTION-LIST - GUANIDINOBUTYRASE-RXN REACTION-LIST - GUANIDINOBUTANAMIDE-NH3-RXN // UNIQUE-ID - ARGASEDEG-PWY TYPES - GLUTAMATE-SYN TYPES - ARGININE-DEG COMMON-NAME - arginine degradation I (arginase pathway) CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - |caspi| CREDITS - SRI CREDITS - |hying| PREDECESSORS - (PYRROLINECARBDEHYDROG-RXN SPONTPRO-RXN) PREDECESSORS - (ORNITHINE-GLU-AMINOTRANSFORASE-RXN ARGINASE-RXN) PREDECESSORS - (SPONTPRO-RXN ORNITHINE-GLU-AMINOTRANSFORASE-RXN) PRIMARIES - (ARGINASE-RXN (ARG) (L-ORNITHINE)) REACTION-LAYOUT - (ORNITHINE-GLU-AMINOTRANSFORASE-RXN (:LEFT-PRIMARIES L-ORNITHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-GLUTAMATE_GAMMA-SEMIALDEHYDE GLT)) REACTION-LAYOUT - (SPONTPRO-RXN (:LEFT-PRIMARIES L-GLUTAMATE_GAMMA-SEMIALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-DELTA1-PYRROLINE_5-CARBOXYLATE)) REACTION-LAYOUT - (PYRROLINECARBDEHYDROG-RXN (:LEFT-PRIMARIES L-DELTA1-PYRROLINE_5-CARBOXYLATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLT)) REACTION-LAYOUT - (ARGINASE-RXN (:LEFT-PRIMARIES ARG) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-ORNITHINE)) REACTION-LIST - ORNITHINE-GLU-AMINOTRANSFORASE-RXN REACTION-LIST - SPONTPRO-RXN REACTION-LIST - PYRROLINECARBDEHYDROG-RXN REACTION-LIST - ARGINASE-RXN SYNONYMS - arginase degradative pathway SYNONYMS - glutamate biosynthesis // UNIQUE-ID - LEU-DEG2-PWY TYPES - LEUCINE-DEG COMMON-NAME - leucine degradation I CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - |caspi| CREDITS - SRI CREDITS - |wagg| PATHWAY-LINKS - (3-HYDROXY-3-METHYL-GLUTARYL-COA (PWY-922 . :OUTGOING)) PREDECESSORS - (HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN METHYLGLUTACONYL-COA-HYDRATASE-RXN) PREDECESSORS - (METHYLGLUTACONYL-COA-HYDRATASE-RXN METHYLCROTONYL-COA-CARBOXYLASE-RXN) PREDECESSORS - (METHYLCROTONYL-COA-CARBOXYLASE-RXN ISOVALERYL-COA-FAD-RXN) PREDECESSORS - (2KETO-4METHYL-PENTANOATE-DEHYDROG-RXN BRANCHED-CHAINAMINOTRANSFERLEU-RXN) PREDECESSORS - (ISOVALERYL-COA-FAD-RXN 2KETO-4METHYL-PENTANOATE-DEHYDROG-RXN) PRIMARIES - (HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN NIL (3-KETOBUTYRATE)) REACTION-LAYOUT - (HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN (:LEFT-PRIMARIES 3-HYDROXY-3-METHYL-GLUTARYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-KETOBUTYRATE)) REACTION-LAYOUT - (METHYLGLUTACONYL-COA-HYDRATASE-RXN (:LEFT-PRIMARIES 3-HYDROXY-3-METHYL-GLUTARYL-COA) (:DIRECTION :R2L) (:RIGHT-PRIMARIES TRANS-3-METHYL-GLUTACONYL-COA)) REACTION-LAYOUT - (METHYLCROTONYL-COA-CARBOXYLASE-RXN (:LEFT-PRIMARIES 3-METHYL-CROTONYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TRANS-3-METHYL-GLUTACONYL-COA)) REACTION-LAYOUT - (2KETO-4METHYL-PENTANOATE-DEHYDROG-RXN (:LEFT-PRIMARIES 2K-4CH3-PENTANOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ISOVALERYL-COA)) REACTION-LAYOUT - (ISOVALERYL-COA-FAD-RXN (:LEFT-PRIMARIES ISOVALERYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-METHYL-CROTONYL-COA)) REACTION-LAYOUT - (BRANCHED-CHAINAMINOTRANSFERLEU-RXN (:LEFT-PRIMARIES LEU) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2K-4CH3-PENTANOATE)) REACTION-LIST - HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN REACTION-LIST - METHYLGLUTACONYL-COA-HYDRATASE-RXN REACTION-LIST - METHYLCROTONYL-COA-CARBOXYLASE-RXN REACTION-LIST - 2KETO-4METHYL-PENTANOATE-DEHYDROG-RXN REACTION-LIST - ISOVALERYL-COA-FAD-RXN REACTION-LIST - BRANCHED-CHAINAMINOTRANSFERLEU-RXN // UNIQUE-ID - ASPARAGINE-DEG1-PWY TYPES - ASPARAGINE-DEG COMMON-NAME - asparagine degradation I CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - SRI CREDITS - |fulcher| PREDECESSORS - (ASPARAGHYD-RXN) REACTION-LAYOUT - (ASPARAGHYD-RXN (:LEFT-PRIMARIES ASN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-ASPARTATE)) REACTION-LIST - ASPARAGHYD-RXN SYNONYMS - asparagine degradation 1 // UNIQUE-ID - ILEUDEG-PWY TYPES - ISOLEUCINE-DEG COMMON-NAME - isoleucine degradation I CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - |caspi| CREDITS - SRI CREDITS - |hying| PREDECESSORS - (TIGLYLCOA-HYDROXY-RXN 2-MEBUCOA-FAD-RXN) PREDECESSORS - (1.1.1.178-RXN TIGLYLCOA-HYDROXY-RXN) PREDECESSORS - (METHYLACETOACETYLCOATHIOL-RXN 1.1.1.178-RXN) PREDECESSORS - (2KETO-3METHYLVALERATE-RXN BRANCHED-CHAINAMINOTRANSFERILEU-RXN) PREDECESSORS - (2-MEBUCOA-FAD-RXN 2KETO-3METHYLVALERATE-RXN) PRIMARIES - (METHYLACETOACETYLCOATHIOL-RXN (2-METHYL-ACETO-ACETYL-COA) (PROPIONYL-COA ACETYL-COA)) REACTION-LAYOUT - (2KETO-3METHYLVALERATE-RXN (:LEFT-PRIMARIES 2-KETO-3-METHYL-VALERATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-METHYL-BUTYRYL-COA)) REACTION-LAYOUT - (METHYLACETOACETYLCOATHIOL-RXN (:LEFT-PRIMARIES 2-METHYL-ACETO-ACETYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ACETYL-COA PROPIONYL-COA)) REACTION-LAYOUT - (TIGLYLCOA-HYDROXY-RXN (:LEFT-PRIMARIES TIGLYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-METHYL-3-HYDROXY-BUTYRYL-COA)) REACTION-LAYOUT - (1.1.1.178-RXN (:LEFT-PRIMARIES 2-METHYL-3-HYDROXY-BUTYRYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-METHYL-ACETO-ACETYL-COA)) REACTION-LAYOUT - (BRANCHED-CHAINAMINOTRANSFERILEU-RXN (:LEFT-PRIMARIES ILE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-KETO-3-METHYL-VALERATE)) REACTION-LAYOUT - (2-MEBUCOA-FAD-RXN (:LEFT-PRIMARIES 2-METHYL-BUTYRYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TIGLYL-COA)) REACTION-LIST - 2KETO-3METHYLVALERATE-RXN REACTION-LIST - METHYLACETOACETYLCOATHIOL-RXN REACTION-LIST - TIGLYLCOA-HYDROXY-RXN REACTION-LIST - 1.1.1.178-RXN REACTION-LIST - BRANCHED-CHAINAMINOTRANSFERILEU-RXN REACTION-LIST - 2-MEBUCOA-FAD-RXN // UNIQUE-ID - GLYCLEAV-PWY TYPES - GLYCINE-DEG COMMON-NAME - glycine cleavage complex CITATIONS - :EV-COMP-AINF:3497824359:liya CREDITS - |fulcher| CREDITS - SRI CREDITS - |caspi| CREDITS - O-18 CREDITS - |riley| KEY-REACTIONS - GCVP-RXN PREDECESSORS - (GCVT-RXN GCVP-RXN) PREDECESSORS - (RXN-8629 GCVT-RXN) PREDECESSORS - (GCVP-RXN RXN-8629) PRIMARIES - (GCVMULTI-RXN (GLY) NIL) PRIMARIES - (GLYOHMETRANS-RXN NIL (GLY)) REACTION-LAYOUT - (RXN-8629 (:LEFT-PRIMARIES DIHYDROLIPOYL-GCVH) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PROTEIN-LIPOYLLYSINE)) REACTION-LAYOUT - (GCVT-RXN (:LEFT-PRIMARIES AMINOMETHYLDIHYDROLIPOYL-GCVH) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROLIPOYL-GCVH)) REACTION-LAYOUT - (GCVP-RXN (:LEFT-PRIMARIES PROTEIN-LIPOYLLYSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AMINOMETHYLDIHYDROLIPOYL-GCVH)) REACTION-LIST - RXN-8629 REACTION-LIST - GCVT-RXN REACTION-LIST - GCVP-RXN SYNONYMS - glycine cleavage system SYNONYMS - glycine decarboxylase complex SYNONYMS - gcv system // UNIQUE-ID - LYSINE-DEG1-PWY TYPES - LYSINE-DEG COMMON-NAME - lysine degradation II CITATIONS - :EV-COMP-AINF:3497824356:liya PREDECESSORS - (2-KETO-ADIPATE-DEHYDROG-RXN 2-AMINOADIPATE-AMINOTRANSFERASE-RXN) PREDECESSORS - (2-AMINOADIPATE-AMINOTRANSFERASE-RXN ALLYSINE-DEHYDROG-RXN) PREDECESSORS - (ALLYSINE-DEHYDROG-RXN 1.5.1.9-RXN) PREDECESSORS - (1.5.1.9-RXN 1.5.1.8-RXN) PRIMARIES - (GLUTARYL-COA-DEHYDROG-RXN (GLUTARYL-COA) (GLUTACONYL-COA)) PRIMARIES - (2-AMINOADIPATE-AMINOTRANSFERASE-RXN (CPD-468) (2K-ADIPATE)) PRIMARIES - (1.5.1.9-RXN (SACCHAROPINE) (ALLYSINE)) PRIMARIES - (1.5.1.8-RXN (LYS) (SACCHAROPINE)) PRIMARIES - (GLUTACONYL-COA-DECARBOXYLASE-RXN (GLUTACONYL-COA) (CROTONYL-COA)) REACTION-LAYOUT - (2-KETO-ADIPATE-DEHYDROG-RXN (:LEFT-PRIMARIES 2K-ADIPATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CARBON-DIOXIDE)) REACTION-LAYOUT - (2-AMINOADIPATE-AMINOTRANSFERASE-RXN (:LEFT-PRIMARIES CPD-468) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2K-ADIPATE)) REACTION-LAYOUT - (ALLYSINE-DEHYDROG-RXN (:LEFT-PRIMARIES ALLYSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-468)) REACTION-LAYOUT - (1.5.1.9-RXN (:LEFT-PRIMARIES SACCHAROPINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALLYSINE)) REACTION-LAYOUT - (1.5.1.8-RXN (:LEFT-PRIMARIES SACCHAROPINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES LYS)) REACTION-LIST - 2-KETO-ADIPATE-DEHYDROG-RXN REACTION-LIST - 2-AMINOADIPATE-AMINOTRANSFERASE-RXN REACTION-LIST - ALLYSINE-DEHYDROG-RXN REACTION-LIST - 1.5.1.9-RXN REACTION-LIST - 1.5.1.8-RXN SYNONYMS - lysine degradation I // UNIQUE-ID - MALATE-ASPARTATE-SHUTTLE-PWY TYPES - ASPARTATE-DEG COMMON-NAME - aspartate degradation II CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - SRI CREDITS - |fulcher| PREDECESSORS - (MALATE-DEH-RXN ASPAMINOTRANS-RXN) REACTION-LAYOUT - (MALATE-DEH-RXN (:LEFT-PRIMARIES MAL) (:DIRECTION :R2L) (:RIGHT-PRIMARIES OXALACETIC_ACID)) REACTION-LAYOUT - (ASPAMINOTRANS-RXN (:LEFT-PRIMARIES L-ASPARTATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OXALACETIC_ACID)) REACTION-LIST - MALATE-DEH-RXN REACTION-LIST - ASPAMINOTRANS-RXN SYNONYMS - malate/aspartate shuttle pathway // UNIQUE-ID - PROUT-PWY TYPES - PROLINE-DEG COMMON-NAME - proline degradation I CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - |keseler| CREDITS - |ingraham| CREDITS - O0-3 CREDITS - SRI CREDITS - |caspi| CREDITS - O-18 CREDITS - |riley| PREDECESSORS - (PYRROLINECARBDEHYDROG-RXN RXN-821) REACTION-LAYOUT - (RXN-821 (:LEFT-PRIMARIES PRO) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-DELTA1-PYRROLINE_5-CARBOXYLATE)) REACTION-LAYOUT - (PYRROLINECARBDEHYDROG-RXN (:LEFT-PRIMARIES L-DELTA1-PYRROLINE_5-CARBOXYLATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLT)) REACTION-LIST - RXN-821 REACTION-LIST - PYRROLINECARBDEHYDROG-RXN SYNONYMS - proline utilization // UNIQUE-ID - PWY-4561 TYPES - PROLINE-DEG COMMON-NAME - proline degradation II CITATIONS - :EV-COMP-AINF:3497824357:liya PREDECESSORS - (RXN-7183 RXN-7181) PRIMARIES - (RXN-7183 (L-DELTA1-PYRROLINE_5-CARBOXYLATE) (GLT)) PRIMARIES - (RXN-7181 (PRO) (L-DELTA1-PYRROLINE_5-CARBOXYLATE)) PRIMARIES - (PYRROLINECARBDEHYDROG-RXN (L-DELTA1-PYRROLINE_5-CARBOXYLATE) (GLT)) REACTION-LAYOUT - (RXN-7183 (:LEFT-PRIMARIES L-DELTA1-PYRROLINE_5-CARBOXYLATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLT)) REACTION-LAYOUT - (RXN-7181 (:LEFT-PRIMARIES PRO) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-DELTA1-PYRROLINE_5-CARBOXYLATE)) REACTION-LIST - RXN-7183 REACTION-LIST - RXN-7181 SYNONYMS - proline catabolism // UNIQUE-ID - VALDEG-PWY TYPES - VALINE-DEG COMMON-NAME - valine degradation I CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - |wagg| CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (2-KETO-ISOVALERATE (PANTO-PWY . :OUTGOING)) PREDECESSORS - (3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN METHYLACYLYLCOA-HYDROXY-RXN) PREDECESSORS - (1.2.1.27-RXN 3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN) PREDECESSORS - (3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN 3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN) PREDECESSORS - (METHYLACYLYLCOA-HYDROXY-RXN MEPROPCOA-FAD-RXN) PREDECESSORS - (1.2.1.25-RXN BRANCHED-CHAINAMINOTRANSFERVAL-RXN) PREDECESSORS - (MEPROPCOA-FAD-RXN 1.2.1.25-RXN) REACTION-LAYOUT - (1.2.1.25-RXN (:LEFT-PRIMARIES 2-KETO-ISOVALERATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ISOBUTYRYL-COA)) REACTION-LAYOUT - (1.2.1.27-RXN (:LEFT-PRIMARIES CH3-MALONATE-S-ALD CPD-12179) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HCO3)) REACTION-LAYOUT - (3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN (:LEFT-PRIMARIES 3-HYDROXY-ISOBUTYRATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CH3-MALONATE-S-ALD)) REACTION-LAYOUT - (3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN (:LEFT-PRIMARIES 3-HYDROXY-ISOBUTYRYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-HYDROXY-ISOBUTYRATE)) REACTION-LAYOUT - (METHYLACYLYLCOA-HYDROXY-RXN (:LEFT-PRIMARIES METHACRYLYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-HYDROXY-ISOBUTYRYL-COA)) REACTION-LAYOUT - (MEPROPCOA-FAD-RXN (:LEFT-PRIMARIES ISOBUTYRYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES METHACRYLYL-COA)) REACTION-LAYOUT - (BRANCHED-CHAINAMINOTRANSFERVAL-RXN (:LEFT-PRIMARIES VAL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-KETO-ISOVALERATE)) REACTION-LIST - 1.2.1.25-RXN REACTION-LIST - 1.2.1.27-RXN REACTION-LIST - 3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN REACTION-LIST - 3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN REACTION-LIST - METHYLACYLYLCOA-HYDROXY-RXN REACTION-LIST - MEPROPCOA-FAD-RXN REACTION-LIST - BRANCHED-CHAINAMINOTRANSFERVAL-RXN // UNIQUE-ID - GLUTAMINDEG-PWY TYPES - GLUTAMINE-DEG COMMON-NAME - glutamine degradation I CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - |fulcher| CREDITS - SRI CREDITS - |keseler| PREDECESSORS - (GLUTAMIN-RXN) REACTION-LAYOUT - (GLUTAMIN-RXN (:LEFT-PRIMARIES GLN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLT)) REACTION-LIST - GLUTAMIN-RXN SYNONYMS - glutamine - glutamate pathway I SYNONYMS - glutamine degradation IV // UNIQUE-ID - CITRULLINE-DEG-PWY TYPES - MISCELLANEOUS-DEG COMMON-NAME - citrulline degradation CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |hartmut| CREDITS - |caspi| CREDITS - SRI CREDITS - |hying| KEY-REACTIONS - ORNCARBAMTRANSFER-RXN PREDECESSORS - (CARBAMATE-KINASE-RXN ORNCARBAMTRANSFER-RXN) PRIMARIES - (ORNCARBAMTRANSFER-RXN (L-CITRULLINE) (CARBAMOYL-P)) PRIMARIES - (CARBAMATE-KINASE-RXN (CARBAMOYL-P) (CARBON-DIOXIDE)) REACTION-LAYOUT - (CARBAMATE-KINASE-RXN (:LEFT-PRIMARIES CARBON-DIOXIDE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CARBAMOYL-P)) REACTION-LAYOUT - (ORNCARBAMTRANSFER-RXN (:LEFT-PRIMARIES CARBAMOYL-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES L-CITRULLINE)) REACTION-LIST - CARBAMATE-KINASE-RXN REACTION-LIST - ORNCARBAMTRANSFER-RXN // UNIQUE-ID - PWY-701 TYPES - METHIONINE-DEG COMMON-NAME - methionine degradation II CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - O-18 CREDITS - |pellegrini-toole| PREDECESSORS - (METHIONINE-GAMMA-LYASE-RXN) REACTION-LAYOUT - (METHIONINE-GAMMA-LYASE-RXN (:LEFT-PRIMARIES MET) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-OXOBUTANOATE CPD-7671)) REACTION-LIST - METHIONINE-GAMMA-LYASE-RXN SYNONYMS - methionine degradation 2 // UNIQUE-ID - PWY-5766 TYPES - GLUTAMATE-DEG COMMON-NAME - glutamate degradation X CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (GLT (GLUTAMINE-DEG . :INCOMING) (ARGININE-DEG . :INCOMING) (HISTIDINE-DEG . :INCOMING) (PROLINE-DEG . :INCOMING)) PREDECESSORS - (GLUTAMATE-DEHYDROGENASE-NADP+-RXN) PRIMARIES - (GLUTAMATE-DEHYDROGENASE-RXN (GLT) (2-KETOGLUTARATE)) PRIMARIES - (GLUTAMATE-DEHYDROGENASE-NADP+-RXN (GLT) (2-KETOGLUTARATE)) REACTION-LAYOUT - (GLUTAMATE-DEHYDROGENASE-NADP+-RXN (:LEFT-PRIMARIES GLT) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-KETOGLUTARATE)) REACTION-LIST - GLUTAMATE-DEHYDROGENASE-NADP+-RXN // UNIQUE-ID - PWY-3982 TYPES - Uracil-Degradation TYPES - Beta-Alanine-Biosynthesis COMMON-NAME - β-alanine biosynthesis III CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - SRI CREDITS - |caspi| CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |tissier| PATHWAY-LINKS - (B-ALANINE PWY-3961) PREDECESSORS - (BETA-UREIDOPROPIONASE-RXN DIHYDROPYRIMIDINASE-RXN) PREDECESSORS - (DIHYDROPYRIMIDINASE-RXN 1.3.1.2-RXN) PREDECESSORS - (1.3.1.2-RXN) PRIMARIES - (BETA-UREIDOPROPIONASE-RXN (3-UREIDO-PROPIONATE) (B-ALANINE)) PRIMARIES - (DIHYDROPYRIMIDINASE-RXN (DI-H-URACIL) (3-UREIDO-PROPIONATE)) PRIMARIES - (1.3.1.2-RXN (URACIL) (DI-H-URACIL)) REACTION-LAYOUT - (BETA-UREIDOPROPIONASE-RXN (:LEFT-PRIMARIES 3-UREIDO-PROPIONATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES B-ALANINE)) REACTION-LAYOUT - (DIHYDROPYRIMIDINASE-RXN (:LEFT-PRIMARIES DI-H-URACIL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-UREIDO-PROPIONATE)) REACTION-LAYOUT - (1.3.1.2-RXN (:LEFT-PRIMARIES DI-H-URACIL) (:DIRECTION :R2L) (:RIGHT-PRIMARIES URACIL)) REACTION-LIST - BETA-UREIDOPROPIONASE-RXN REACTION-LIST - DIHYDROPYRIMIDINASE-RXN REACTION-LIST - 1.3.1.2-RXN SYNONYMS - β-alanine biosynthesis from uracil // UNIQUE-ID - P164-PWY TYPES - Purine-Degradation COMMON-NAME - purine degradation III (anaerobic) CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |caspi| CREDITS - O-18 CREDITS - |pellegrini-toole| PREDECESSORS - (1.2.1.2-RXN FORMATETHFLIG-RXN) PREDECESSORS - (ACETATEKIN-RXN RXN-7566) PREDECESSORS - (RXN-7566 GLYCINE-FORMIMINOTRANSFERASE-RXN) PREDECESSORS - (R127-RXN RXN0-901) PREDECESSORS - (FORMATETHFLIG-RXN METHENYLTHFCYCLOHYDRO-RXN) PREDECESSORS - (METHENYLTHFCYCLOHYDRO-RXN 4.3.1.4-RXN) PREDECESSORS - (4.3.1.4-RXN GLYCINE-FORMIMINOTRANSFERASE-RXN) PREDECESSORS - (GLYCINE-FORMIMINOTRANSFERASE-RXN R63-RXN) PREDECESSORS - (R127-RXN GUANINE-DEAMINASE-RXN) PREDECESSORS - (R128-RXN R127-RXN) PREDECESSORS - (R62-RXN R128-RXN) PREDECESSORS - (R13-RXN R62-RXN) PREDECESSORS - (R63-RXN R13-RXN) PREDECESSORS - (RXN0-901 RXN-8752) PREDECESSORS - (R127-RXN RXN0-902) PREDECESSORS - (RXN0-902 RXN-8755) PRIMARIES - (1.2.1.2-RXN NIL (CARBON-DIOXIDE)) REACTION-LAYOUT - (ACETATEKIN-RXN (:LEFT-PRIMARIES ACET) (:DIRECTION :R2L) (:RIGHT-PRIMARIES ACETYL-P)) REACTION-LAYOUT - (RXN-7566 (:LEFT-PRIMARIES ACETYL-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GLY)) REACTION-LAYOUT - (RXN-8755 (:LEFT-PRIMARIES PURINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HYPOXANTHINE)) REACTION-LAYOUT - (RXN0-902 (:LEFT-PRIMARIES HYPOXANTHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHINE)) REACTION-LAYOUT - (RXN-8752 (:LEFT-PRIMARIES CPD-9016) (:DIRECTION :L2R) (:RIGHT-PRIMARIES URATE)) REACTION-LAYOUT - (RXN0-901 (:LEFT-PRIMARIES XANTHINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES URATE)) REACTION-LAYOUT - (1.2.1.2-RXN (:LEFT-PRIMARIES FORMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CARBON-DIOXIDE)) REACTION-LAYOUT - (FORMATETHFLIG-RXN (:LEFT-PRIMARIES FORMATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 10-FORMYL-THF)) REACTION-LAYOUT - (METHENYLTHFCYCLOHYDRO-RXN (:LEFT-PRIMARIES 5-10-METHENYL-THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 10-FORMYL-THF)) REACTION-LAYOUT - (4.3.1.4-RXN (:LEFT-PRIMARIES CPD-671) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-10-METHENYL-THF)) REACTION-LAYOUT - (GLYCINE-FORMIMINOTRANSFERASE-RXN (:LEFT-PRIMARIES CPD-671 GLY) (:DIRECTION :R2L) (:RIGHT-PRIMARIES N-FORMIMINO-GLYCINE)) REACTION-LAYOUT - (R63-RXN (:LEFT-PRIMARIES CPD-60) (:DIRECTION :L2R) (:RIGHT-PRIMARIES N-FORMIMINO-GLYCINE)) REACTION-LAYOUT - (R13-RXN (:LEFT-PRIMARIES CPD-54) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-60)) REACTION-LAYOUT - (R62-RXN (:LEFT-PRIMARIES 4-AMINO-5-IMIDAZOLE_CARBOXYLATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CARBON-DIOXIDE CPD-54)) REACTION-LAYOUT - (R128-RXN (:LEFT-PRIMARIES 5-UREIDO-4-IMIDAZOLE_CARBOXYLATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CARBON-DIOXIDE 4-AMINO-5-IMIDAZOLE_CARBOXYLATE)) REACTION-LAYOUT - (R127-RXN (:LEFT-PRIMARIES XANTHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-UREIDO-4-IMIDAZOLE_CARBOXYLATE)) REACTION-LAYOUT - (GUANINE-DEAMINASE-RXN (:LEFT-PRIMARIES GUANINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHINE)) REACTION-LIST - ACETATEKIN-RXN REACTION-LIST - RXN-7566 REACTION-LIST - RXN-8755 REACTION-LIST - RXN0-902 REACTION-LIST - RXN-8752 REACTION-LIST - RXN0-901 REACTION-LIST - 1.2.1.2-RXN REACTION-LIST - FORMATETHFLIG-RXN REACTION-LIST - METHENYLTHFCYCLOHYDRO-RXN REACTION-LIST - 4.3.1.4-RXN REACTION-LIST - GLYCINE-FORMIMINOTRANSFERASE-RXN REACTION-LIST - R63-RXN REACTION-LIST - R13-RXN REACTION-LIST - R62-RXN REACTION-LIST - R128-RXN REACTION-LIST - R127-RXN REACTION-LIST - GUANINE-DEAMINASE-RXN SYNONYMS - purine fermentation // UNIQUE-ID - SALVADEHYPOX-PWY TYPES - Adenosine-Nucleotides-Degradation COMMON-NAME - salvage pathways of adenine, hypoxanthine, and their nucleosides CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |arnaud| PREDECESSORS - (RXN0-901 RXN0-902) PREDECESSORS - (RXN0-902 INOPHOSPHOR-RXN) PREDECESSORS - (AMP-NUCLEOSID-RXN ADENPRIBOSYLTRAN-RXN) PREDECESSORS - (INOPHOSPHOR-RXN ADENODEAMIN-RXN) PREDECESSORS - (INOPHOSPHOR-RXN DEOXYINOPHOSPHOR-RXN) PREDECESSORS - (ADENODEAMIN-RXN ADENPHOSPHOR-RXN) PREDECESSORS - (ADENPHOSPHOR-RXN AMP-NUCLEOSID-RXN) PREDECESSORS - (ADENPRIBOSYLTRAN-RXN AMP-NUCLEOSID-RXN) PREDECESSORS - (HYPOXANPRIBOSYLTRAN-RXN INOPHOSPHOR-RXN) PREDECESSORS - (ADENPRIBOSYLTRAN-RXN DEOXYADENPHOSPHOR-RXN) PREDECESSORS - (DEOXYADENPHOSPHOR-RXN ADDALT-RXN) PREDECESSORS - (ADDALT-RXN DEOXYINOPHOSPHOR-RXN) PREDECESSORS - (DEOXYINOPHOSPHOR-RXN INOPHOSPHOR-RXN) PREDECESSORS - (INOSINEKIN-RXN ADENODEAMIN-RXN) PRIMARIES - (GUANPHOSPHOR-RXN NIL (GUANINE)) PRIMARIES - (INOPHOSPHOR-RXN (INOSINE) NIL) REACTION-LAYOUT - (HYPOXANPRIBOSYLTRAN-RXN (:LEFT-PRIMARIES IMP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES HYPOXANTHINE)) REACTION-LAYOUT - (RXN0-902 (:LEFT-PRIMARIES HYPOXANTHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XANTHINE)) REACTION-LAYOUT - (RXN0-901 (:LEFT-PRIMARIES XANTHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES URATE)) REACTION-LAYOUT - (INOSINEKIN-RXN (:LEFT-PRIMARIES INOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES IMP)) REACTION-LAYOUT - (ADENODEAMIN-RXN (:LEFT-PRIMARIES ADENOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INOSINE)) REACTION-LAYOUT - (ADDALT-RXN (:LEFT-PRIMARIES DEOXYADENOSINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DEOXYINOSINE)) REACTION-LAYOUT - (ADENPHOSPHOR-RXN (:LEFT-PRIMARIES ADENOSINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES ADENINE)) REACTION-LAYOUT - (DEOXYADENPHOSPHOR-RXN (:LEFT-PRIMARIES ADENINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DEOXYADENOSINE)) REACTION-LAYOUT - (DEOXYINOPHOSPHOR-RXN (:LEFT-PRIMARIES DEOXYINOSINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES HYPOXANTHINE)) REACTION-LAYOUT - (INOPHOSPHOR-RXN (:LEFT-PRIMARIES INOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HYPOXANTHINE)) REACTION-LAYOUT - (ADENPRIBOSYLTRAN-RXN (:LEFT-PRIMARIES AMP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES ADENINE)) REACTION-LAYOUT - (AMP-NUCLEOSID-RXN (:LEFT-PRIMARIES AMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ADENINE)) REACTION-LIST - HYPOXANPRIBOSYLTRAN-RXN REACTION-LIST - RXN0-902 REACTION-LIST - RXN0-901 REACTION-LIST - INOSINEKIN-RXN REACTION-LIST - ADENODEAMIN-RXN REACTION-LIST - ADDALT-RXN REACTION-LIST - ADENPHOSPHOR-RXN REACTION-LIST - DEOXYADENPHOSPHOR-RXN REACTION-LIST - DEOXYINOPHOSPHOR-RXN REACTION-LIST - INOPHOSPHOR-RXN REACTION-LIST - ADENPRIBOSYLTRAN-RXN REACTION-LIST - AMP-NUCLEOSID-RXN SYNONYMS - purine ribonucleotide/ribonucleoside metabolism // UNIQUE-ID - PWY0-1391 TYPES - Methylthioadenosine-Degradation COMMON-NAME - methylthioadenosine degradation CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |keseler| PATHWAY-LINKS - (5-METHYLTHIOADENOSINE BSUBPOLYAMSYN-PWY) PATHWAY-LINKS - (CPD-560 "excreted into the environment") PREDECESSORS - (METHYLTHIOADENOSINE-NUCLEOSIDASE-RXN) PRIMARIES - (METHYLTHIOADENOSINE-NUCLEOSIDASE-RXN (5-METHYLTHIOADENOSINE) (CPD-560)) REACTION-LAYOUT - (METHYLTHIOADENOSINE-NUCLEOSIDASE-RXN (:LEFT-PRIMARIES 5-METHYLTHIOADENOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-560)) REACTION-LIST - METHYLTHIOADENOSINE-NUCLEOSIDASE-RXN // UNIQUE-ID - PWY-5691 TYPES - Urate-Degradation COMMON-NAME - urate degradation to allantoin CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (S-ALLANTOIN |Allantoin-degradation|) PATHWAY-LINKS - (URATE PWY-5044) PREDECESSORS - (3.5.2.17-RXN URATE-OXIDASE-RXN) PREDECESSORS - (RXN-6201 3.5.2.17-RXN) PRIMARIES - (R14-RXN NIL (GLYOX)) PRIMARIES - (UREIDOGLYCOLATE-LYASE-RXN (CPD-1091) (GLYOX)) REACTION-LAYOUT - (3.5.2.17-RXN (:LEFT-PRIMARIES 5-HYDROXYISOURATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-5821)) REACTION-LAYOUT - (RXN-6201 (:LEFT-PRIMARIES CPD-5821) (:DIRECTION :L2R) (:RIGHT-PRIMARIES S-ALLANTOIN)) REACTION-LAYOUT - (URATE-OXIDASE-RXN (:LEFT-PRIMARIES URATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-HYDROXYISOURATE)) REACTION-LIST - 3.5.2.17-RXN REACTION-LIST - RXN-6201 REACTION-LIST - URATE-OXIDASE-RXN // UNIQUE-ID - PWY-283 TYPES - Benzoate-Degradation COMMON-NAME - benzoate degradation II (aerobic and anaerobic) CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - |krieger| CREDITS - SRI CREDITS - |caspi| PRIMARIES - (BENZOATE--COA-LIGASE-RXN (BENZOATE) (BENZOYLCOA)) REACTION-LAYOUT - (BENZOATE--COA-LIGASE-RXN (:LEFT-PRIMARIES BENZOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES BENZOYLCOA)) REACTION-LIST - BENZOATE--COA-LIGASE-RXN SYNONYMS - benzoate oxidation SYNONYMS - benzoate degradation SYNONYMS - benzoic acid degradation SYNONYMS - benzoic acid oxidation // UNIQUE-ID - PWY-5934 TYPES - Noncarbon-Nutrients COMMON-NAME - Fe(III)-reduction and Fe(II) transport CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - O-27 CREDITS - |pujar| PATHWAY-LINKS - (FE+3 (PWY-5912 . :INCOMING)) PREDECESSORS - (TRANS-RXN-171 FERRIC-CHELATE-REDUCTASE-RXN) PREDECESSORS - (FERRIC-CHELATE-REDUCTASE-RXN) PRIMARIES - (FERRIC-CHELATE-REDUCTASE-RXN (FE+3) (FE+2)) REACTION-LAYOUT - (TRANS-RXN-171 (:LEFT-PRIMARIES FE+2) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FE+2)) REACTION-LAYOUT - (FERRIC-CHELATE-REDUCTASE-RXN (:LEFT-PRIMARIES FE+3) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FE+2)) REACTION-LIST - TRANS-RXN-171 REACTION-LIST - FERRIC-CHELATE-REDUCTASE-RXN SYNONYMS - Fe(III)-reduction SYNONYMS - Fe(II) transport SYNONYMS - Fe(III)-chelation and Fe(II) transport SYNONYMS - strategy I iron uptake // UNIQUE-ID - PWY-5340 TYPES - Activation TYPES - Sulfur-Assimilation COMMON-NAME - sulfate activation for sulfonation CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (APS (SULFMETII-PWY . :OUTGOING)) PATHWAY-LINKS - (PAPS PWY-1187) PREDECESSORS - (ADENYLYLSULFKIN-RXN SULFATE-ADENYLYLTRANS-RXN) PREDECESSORS - (SULFATE-ADENYLYLTRANS-RXN) PRIMARIES - (ACSERLY-RXN NIL (CYS)) PRIMARIES - (ADENYLYLSULFKIN-RXN (APS) (PAPS)) PRIMARIES - (SULFITE-REDUCTASE-FERREDOXIN-RXN (SO3) (HS)) PRIMARIES - (1.8.4.9-RXN (APS) (SO3)) PRIMARIES - (HOMOCYSMET-RXN (HOMO-CYS) (MET)) PRIMARIES - (SERINE-O-ACETTRAN-RXN (SER) (ACETYLSERINE)) PRIMARIES - (SULFATE-ADENYLYLTRANS-RXN (SULFATE) (APS)) REACTION-LAYOUT - (ADENYLYLSULFKIN-RXN (:LEFT-PRIMARIES APS) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PAPS)) REACTION-LAYOUT - (SULFATE-ADENYLYLTRANS-RXN (:LEFT-PRIMARIES SULFATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES APS)) REACTION-LIST - ADENYLYLSULFKIN-RXN REACTION-LIST - SULFATE-ADENYLYLTRANS-RXN SYNONYMS - sulfation pathway // UNIQUE-ID - PWY-5278 TYPES - Sulfite-Oxidation COMMON-NAME - sulfite oxidation III CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - SRI CREDITS - |caspi| KEY-REACTIONS - ADENYLYLSULFATE-REDUCTASE-RXN PREDECESSORS - (SULFATE-ADENYLYLTRANS-RXN ADENYLYLSULFATE-REDUCTASE-RXN) PREDECESSORS - (ADENYLYLSULFATE-REDUCTASE-RXN) PRIMARIES - (SULFATE-ADENYLYLTRANS-RXN NIL (SULFATE)) PRIMARIES - (ADENYLYLSULFATE-REDUCTASE-RXN (SO3) NIL) PRIMARIES - (SULFITE-DEHYDROGENASE-RXN (SO3) (SULFATE)) REACTION-LAYOUT - (SULFATE-ADENYLYLTRANS-RXN (:LEFT-PRIMARIES SULFATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES APS)) REACTION-LAYOUT - (ADENYLYLSULFATE-REDUCTASE-RXN (:LEFT-PRIMARIES SO3) (:DIRECTION :L2R) (:RIGHT-PRIMARIES APS)) REACTION-LIST - SULFATE-ADENYLYLTRANS-RXN REACTION-LIST - ADENYLYLSULFATE-REDUCTASE-RXN // UNIQUE-ID - SULFMETII-PWY TYPES - Sulfate-Reduction COMMON-NAME - sulfate reduction II (assimilatory) CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - |caspi| CREDITS - SRI CREDITS - |Iourovitski| PATHWAY-LINKS - (APS (PWY-5340 . :OUTGOING)) PATHWAY-LINKS - (HS CYSTSYN-PWY) PREDECESSORS - (SULFATE-ADENYLYLTRANS-RXN) PREDECESSORS - (1.8.4.9-RXN SULFATE-ADENYLYLTRANS-RXN) PREDECESSORS - (SULFITE-REDUCTASE-FERREDOXIN-RXN 1.8.4.9-RXN) PRIMARIES - (ACSERLY-RXN NIL (CYS)) PRIMARIES - (ADENYLYLSULFKIN-RXN (APS) (PAPS)) PRIMARIES - (SULFITE-REDUCTASE-FERREDOXIN-RXN (SO3) (HS)) PRIMARIES - (1.8.4.9-RXN (APS) (SO3)) PRIMARIES - (HOMOCYSMET-RXN (HOMO-CYS) (MET)) PRIMARIES - (SERINE-O-ACETTRAN-RXN (SER) (ACETYLSERINE)) PRIMARIES - (SULFATE-ADENYLYLTRANS-RXN (SULFATE) (APS)) REACTION-LAYOUT - (1.8.4.9-RXN (:LEFT-PRIMARIES SO3) (:DIRECTION :R2L) (:RIGHT-PRIMARIES APS)) REACTION-LAYOUT - (SULFITE-REDUCTASE-FERREDOXIN-RXN (:LEFT-PRIMARIES HS) (:DIRECTION :R2L) (:RIGHT-PRIMARIES SO3)) REACTION-LAYOUT - (SULFATE-ADENYLYLTRANS-RXN (:LEFT-PRIMARIES SULFATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES APS)) REACTION-LIST - 1.8.4.9-RXN REACTION-LIST - SULFITE-REDUCTASE-FERREDOXIN-RXN REACTION-LIST - SULFATE-ADENYLYLTRANS-RXN SYNONYMS - sulfur metabolism SYNONYMS - sulfur assimilation // UNIQUE-ID - PWY-5350 TYPES - Thiosulfate-Disproportionation COMMON-NAME - thiosulfate disproportionation III (rhodanese) CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |caspi| PREDECESSORS - (THIOSULFATE-SULFURTRANSFERASE-RXN) PRIMARIES - (THIOSULFATE-SULFURTRANSFERASE-RXN (S2O3) (SO3 HSCN)) REACTION-LAYOUT - (THIOSULFATE-SULFURTRANSFERASE-RXN (:LEFT-PRIMARIES S2O3) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HSCN SO3)) REACTION-LIST - THIOSULFATE-SULFURTRANSFERASE-RXN // UNIQUE-ID - PWY-4984 TYPES - NITROGEN-DEG COMMON-NAME - urea cycle CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - SRI CREDITS - |caspi| PREDECESSORS - (ORNCARBAMTRANSFER-RXN 6.3.4.16-RXN) PREDECESSORS - (ARGSUCCINSYN-RXN ORNCARBAMTRANSFER-RXN) PREDECESSORS - (ARGSUCCINLYA-RXN ARGSUCCINSYN-RXN) PREDECESSORS - (ARGINASE-RXN ARGSUCCINLYA-RXN) PREDECESSORS - (ORNCARBAMTRANSFER-RXN ARGINASE-RXN) PRIMARIES - (6.3.4.16-RXN (AMMONIA) (CARBAMOYL-P)) REACTION-LAYOUT - (6.3.4.16-RXN (:LEFT-PRIMARIES AMMONIA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CARBAMOYL-P)) REACTION-LAYOUT - (ARGINASE-RXN (:LEFT-PRIMARIES ARG) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-ORNITHINE)) REACTION-LAYOUT - (ARGSUCCINLYA-RXN (:LEFT-PRIMARIES L-ARGININO-SUCCINATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ARG)) REACTION-LAYOUT - (ARGSUCCINSYN-RXN (:LEFT-PRIMARIES L-CITRULLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-ARGININO-SUCCINATE)) REACTION-LAYOUT - (ORNCARBAMTRANSFER-RXN (:LEFT-PRIMARIES CARBAMOYL-P L-ORNITHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-CITRULLINE)) REACTION-LIST - 6.3.4.16-RXN REACTION-LIST - ARGINASE-RXN REACTION-LIST - ARGSUCCINLYA-RXN REACTION-LIST - ARGSUCCINSYN-RXN REACTION-LIST - ORNCARBAMTRANSFER-RXN SYNONYMS - Krebs ornithine cycle SYNONYMS - Krebs-Henseleit cycle // UNIQUE-ID - PWY-381 TYPES - Nitrate-Reduction COMMON-NAME - nitrate reduction II (assimilatory) CITATIONS - :EV-COMP-AINF:3497824356:liya PREDECESSORS - (GLUTAMINESYN-RXN FERREDOXIN--NITRITE-REDUCTASE-RXN) PREDECESSORS - (FERREDOXIN--NITRITE-REDUCTASE-RXN NITRATE-REDUCTASE-NADH-RXN) PRIMARIES - (GLUTAMINESYN-RXN (AMMONIA) (GLN)) REACTION-LAYOUT - (FERREDOXIN--NITRITE-REDUCTASE-RXN (:LEFT-PRIMARIES AMMONIA) (:DIRECTION :R2L) (:RIGHT-PRIMARIES NITRITE)) REACTION-LAYOUT - (GLUTAMINESYN-RXN (:LEFT-PRIMARIES AMMONIA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLN)) REACTION-LAYOUT - (NITRATE-REDUCTASE-NADH-RXN (:LEFT-PRIMARIES NITRITE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES NITRATE)) REACTION-LIST - FERREDOXIN--NITRITE-REDUCTASE-RXN REACTION-LIST - GLUTAMINESYN-RXN REACTION-LIST - NITRATE-REDUCTASE-NADH-RXN SYNONYMS - nitrate assimilation // UNIQUE-ID - PWY-1081 TYPES - Sugars-And-Polysaccharides COMMON-NAME - homogalacturonan degradation CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - O-28 CREDITS - |pujar| PRIMARIES - (RXN-2103 NIL NIL) REACTION-LAYOUT - (RXN-2103 (:LEFT-PRIMARIES |1-4-alpha-D-galacturonosyl|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |1-4-alpha-D-galacturonosyl| |1-4-alpha-D-galacturonosyl|)) REACTION-LAYOUT - (RXN-2102 (:LEFT-PRIMARIES |Methylesterified-homogalacturonan|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES METOH |1-4-alpha-D-galacturonosyl|)) REACTION-LIST - RXN-2103 REACTION-LIST - RXN-2102 SYNONYMS - pectin degradation // UNIQUE-ID - PWY0-1300 TYPES - Sugars-And-Polysaccharides COMMON-NAME - 2-O-α-mannosyl-D-glycerate degradation CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - TIGR CREDITS - |djohnson| KEY-REACTIONS - RXN0-5216 PATHWAY-LINKS - (2-PG GLUCONEO-PWY GLYCOLYSIS) PREDECESSORS - (GKI-RXN RXN0-5216) PRIMARIES - (RXN0-2522 (2-O-ALPHA-MANNOSYL-D-GLYCERATE) (CPD0-1063)) REACTION-LAYOUT - (GKI-RXN (:LEFT-PRIMARIES GLYCERATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-PG)) REACTION-LAYOUT - (RXN0-5216 (:LEFT-PRIMARIES CPD0-1063) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLYCERATE)) REACTION-LIST - GKI-RXN REACTION-LIST - RXN0-5216 // UNIQUE-ID - PWY-3861 TYPES - Sugars-And-Polysaccharides COMMON-NAME - mannitol degradation II CITATIONS - :EV-COMP-AINF:3497824356:liya PATHWAY-LINKS - (FRUCTOSE-6P GLYCOLYSIS) PREDECESSORS - (1.1.1.255-RXN) PREDECESSORS - (MANNKIN-RXN 1.1.1.255-RXN) PREDECESSORS - (MANNPISOM-RXN MANNKIN-RXN) PRIMARIES - (MANNPISOM-RXN (MANNOSE-6P) (FRUCTOSE-6P)) PRIMARIES - (MANNKIN-RXN (MANNOSE) (MANNOSE-6P)) PRIMARIES - (1.1.1.255-RXN (MANNITOL) (MANNOSE)) REACTION-LAYOUT - (1.1.1.255-RXN (:LEFT-PRIMARIES MANNITOL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MANNOSE)) REACTION-LAYOUT - (MANNKIN-RXN (:LEFT-PRIMARIES MANNOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MANNOSE-6P)) REACTION-LAYOUT - (MANNPISOM-RXN (:LEFT-PRIMARIES MANNOSE-6P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-6P)) REACTION-LIST - 1.1.1.255-RXN REACTION-LIST - MANNKIN-RXN REACTION-LIST - MANNPISOM-RXN // UNIQUE-ID - GLUCOSE1PMETAB-PWY TYPES - Sugars-And-Polysaccharides COMMON-NAME - glucose and glucose-1-phosphate degradation CITATIONS - :EV-COMP-AINF:3497824357:liya PREDECESSORS - (GLUC1PURIDYLTRANS-RXN) PRIMARIES - (GLUCDEHYDROG-RXN (GLC) (GLC-D-LACTONE)) REACTION-LAYOUT - (GLUCOKIN-RXN (:LEFT-PRIMARIES GLC) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLC-6-P)) REACTION-LAYOUT - (PHOSPHOGLUCMUT-RXN (:LEFT-PRIMARIES GLC-1-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALPHA-GLC-6-P)) REACTION-LAYOUT - (GLUCOSE-1-PHOSPHAT-RXN (:LEFT-PRIMARIES GLC-1-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |D-Glucose|)) REACTION-LAYOUT - (GLUCDEHYDROG-RXN (:LEFT-PRIMARIES GLC) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLC-D-LACTONE)) REACTION-LIST - GLUCOKIN-RXN REACTION-LIST - PHOSPHOGLUCMUT-RXN REACTION-LIST - GLUCOSE-1-PHOSPHAT-RXN REACTION-LIST - GLUCDEHYDROG-RXN // UNIQUE-ID - PWY0-1301 TYPES - Sugars-And-Polysaccharides COMMON-NAME - melibiose degradation CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - TIGR CREDITS - |djohnson| PATHWAY-LINKS - (GALACTOSE PWY-6317) PATHWAY-LINKS - (GLC GLUCOSE1PMETAB-PWY) PREDECESSORS - (ALPHAGALACTOSID-RXN) REACTION-LAYOUT - (ALPHAGALACTOSID-RXN (:LEFT-PRIMARIES MELIBIOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GALACTOSE GLC)) REACTION-LIST - ALPHAGALACTOSID-RXN // UNIQUE-ID - MANNCAT-PWY TYPES - Sugars-And-Polysaccharides COMMON-NAME - D-mannose degradation CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |keseler| CREDITS - O-18 CREDITS - |riley| PATHWAY-LINKS - (MANNOSE-6P (MANNKIN-RXN . :INCOMING)) PATHWAY-LINKS - (FRUCTOSE-6P GLYCOLYSIS) REACTION-LAYOUT - (MANNPISOM-RXN (:LEFT-PRIMARIES MANNOSE-6P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-6P)) REACTION-LIST - MANNPISOM-RXN SYNONYMS - mannose degradation // UNIQUE-ID - PWY0-1182 TYPES - Trehalose-Degradation COMMON-NAME - trehalose degradation II (trehalase) CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - SRI CREDITS - |caspi| KEY-REACTIONS - TREHALA-RXN PATHWAY-LINKS - (GLC-6-P GLYCOLYSIS) PATHWAY-LINKS - (TREHALOSE TRESYN-PWY) PREDECESSORS - (GLUCOKIN-RXN TREHALA-RXN) PREDECESSORS - (TREHALA-RXN) REACTION-LAYOUT - (GLUCOKIN-RXN (:LEFT-PRIMARIES GLC) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLC-6-P)) REACTION-LAYOUT - (TREHALA-RXN (:LEFT-PRIMARIES TREHALOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLC)) REACTION-LIST - GLUCOKIN-RXN REACTION-LIST - TREHALA-RXN // UNIQUE-ID - PWY-621 TYPES - SUCROSE-DEG COMMON-NAME - sucrose degradation III CITATIONS - :EV-COMP-AINF:3497824357:liya PATHWAY-LINKS - (FRUCTOSE-6P (PWY-1042 . :OUTGOING)) PATHWAY-LINKS - (ALPHA-GLC-6-P (PWY-622 . :OUTGOING)) PATHWAY-LINKS - (GLC-1-P (PWY-622 . :OUTGOING)) PREDECESSORS - (SUCROSE-SYNTHASE-RXN) PREDECESSORS - (RXN-1685 RXN-1461) PREDECESSORS - (GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN RXN-1685) PREDECESSORS - (PGLUCISOM-RXN GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN) PREDECESSORS - (FRUCTOKINASE-RXN RXN-1461) PREDECESSORS - (FRUCTOKINASE-RXN SUCROSE-SYNTHASE-RXN) PREDECESSORS - (GLUC1PURIDYLTRANS-RXN SUCROSE-SYNTHASE-RXN) PREDECESSORS - (GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN PHOSPHOGLUCMUT-RXN) PREDECESSORS - (RXN-1461 GLUC1PURIDYLTRANS-RXN) PREDECESSORS - (PHOSPHOGLUCMUT-RXN GLUC1PURIDYLTRANS-RXN) PRIMARIES - (PHOSPHOGLUCMUT-RXN (GLC-1-P) (ALPHA-GLC-6-P)) PRIMARIES - (GLUC1PURIDYLTRANS-RXN (UDP-GLUCOSE) (GLC-1-P)) PRIMARIES - (FRUCTOKINASE-RXN (FRU) (FRUCTOSE-6P)) PRIMARIES - (PGLUCISOM-RXN (GLC-6-P) (FRUCTOSE-6P)) PRIMARIES - (GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN (ALPHA-GLC-6-P) (GLC-6-P)) PRIMARIES - (RXN-1685 (ALPHA-GLUCOSE) (GLC-6-P)) PRIMARIES - (SUCROSE-SYNTHASE-RXN (SUCROSE) (FRU UDP-GLUCOSE)) PRIMARIES - (RXN-1461 (SUCROSE) (FRU ALPHA-GLUCOSE)) PRIMARIES - (ALDOSE-1-EPIMERASE-RXN (ALPHA-GLUCOSE) (GLC)) PRIMARIES - (GLUCOKIN-RXN (GLC) (CPD-222)) REACTION-LAYOUT - (GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN (:LEFT-PRIMARIES ALPHA-GLC-6-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLC-6-P)) REACTION-LAYOUT - (RXN-1685 (:LEFT-PRIMARIES ALPHA-GLUCOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALPHA-GLC-6-P)) REACTION-LAYOUT - (SUCROSE-SYNTHASE-RXN (:LEFT-PRIMARIES FRU UDP-GLUCOSE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES SUCROSE)) REACTION-LAYOUT - (GLUC1PURIDYLTRANS-RXN (:LEFT-PRIMARIES GLC-1-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES UDP-GLUCOSE)) REACTION-LAYOUT - (PHOSPHOGLUCMUT-RXN (:LEFT-PRIMARIES GLC-1-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALPHA-GLC-6-P)) REACTION-LAYOUT - (PGLUCISOM-RXN (:LEFT-PRIMARIES GLC-6-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-6P)) REACTION-LAYOUT - (RXN-1461 (:LEFT-PRIMARIES SUCROSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALPHA-GLUCOSE FRU)) REACTION-LAYOUT - (FRUCTOKINASE-RXN (:LEFT-PRIMARIES FRU) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-6P)) REACTION-LIST - GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN REACTION-LIST - RXN-1685 REACTION-LIST - SUCROSE-SYNTHASE-RXN REACTION-LIST - GLUC1PURIDYLTRANS-RXN REACTION-LIST - PHOSPHOGLUCMUT-RXN REACTION-LIST - PGLUCISOM-RXN REACTION-LIST - RXN-1461 REACTION-LIST - FRUCTOKINASE-RXN SYNONYMS - sucrose mobilization // UNIQUE-ID - SUCUTIL-PWY TYPES - SUCROSE-DEG COMMON-NAME - sucrose degradation I CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - |hying| CREDITS - SRI CREDITS - |fulcher| KEY-REACTIONS - 3.2.1.26-RXN PATHWAY-LINKS - (SUCROSE-6P (SUCROSEPHOSPHO-RXN . :INCOMING)) PATHWAY-LINKS - (FRUCTOSE-6P GLYCOLYSIS) PATHWAY-LINKS - (GLC-6-P GLYCOLYSIS) PREDECESSORS - (FRUCTOKINASE-RXN 3.2.1.26-RXN) PRIMARIES - (SUCROSEPHOSPHO-RXN (SUCROSE) (SUCROSE-6P)) PRIMARIES - (3.2.1.26-RXN (SUCROSE-6P) (GLC-6-P FRU)) REACTION-LAYOUT - (FRUCTOKINASE-RXN (:LEFT-PRIMARIES FRU) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-6P)) REACTION-LAYOUT - (3.2.1.26-RXN (:LEFT-PRIMARIES SUCROSE-6P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLC-6-P FRU)) REACTION-LIST - FRUCTOKINASE-RXN REACTION-LIST - 3.2.1.26-RXN SYNONYMS - sucrose degradation 1 // UNIQUE-ID - XYLCAT-PWY TYPES - Xylose-Degradation COMMON-NAME - xylose degradation I CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - O-18 CREDITS - |riley| CREDITS - O0-3 CREDITS - |ingraham| PATHWAY-LINKS - (XYLULOSE-5-PHOSPHATE NONOXIPENT-PWY) PREDECESSORS - (XYLULOKIN-RXN XYLISOM-RXN) PREDECESSORS - (XYLISOM-RXN) REACTION-LAYOUT - (XYLISOM-RXN (:LEFT-PRIMARIES XYLOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES D-XYLULOSE)) REACTION-LAYOUT - (XYLULOKIN-RXN (:LEFT-PRIMARIES D-XYLULOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES XYLULOSE-5-PHOSPHATE)) REACTION-LIST - XYLISOM-RXN REACTION-LIST - XYLULOKIN-RXN SYNONYMS - xylose catabolism // UNIQUE-ID - PWY-6317 TYPES - GALACTOSE-DEGRADATION COMMON-NAME - galactose degradation I (Leloir pathway) CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (GLC-6-P GLYCOLYSIS) PREDECESSORS - (UDPGLUCEPIM-RXN GALACTURIDYLYLTRANS-RXN) PREDECESSORS - (BETA-PHOSPHOGLUCOMUTASE-RXN RXN-10639) PREDECESSORS - (RXN-10639 GALACTURIDYLYLTRANS-RXN) PREDECESSORS - (BETA-PHOSPHOGLUCOMUTASE-RXN GALACTURIDYLYLTRANS-RXN) PREDECESSORS - (GALACTOKIN-RXN ALDOSE1EPIM-RXN) PREDECESSORS - (GALACTURIDYLYLTRANS-RXN GALACTOKIN-RXN) PRIMARIES - (GALACTURIDYLYLTRANS-RXN (GALACTOSE-1P) (GLC-1-P UDP-GALACTOSE)) PRIMARIES - (BETA-PHOSPHOGLUCOMUTASE-RXN (CPD-448) (GLC-6-P)) PRIMARIES - (GLUC1PURIDYLTRANS-RXN (GLC-1-P) NIL) REACTION-LAYOUT - (RXN-10639 (:LEFT-PRIMARIES GLC-1-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-448)) REACTION-LAYOUT - (ALDOSE1EPIM-RXN (:LEFT-PRIMARIES GALACTOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALPHA-D-GALACTOSE)) REACTION-LAYOUT - (BETA-PHOSPHOGLUCOMUTASE-RXN (:LEFT-PRIMARIES CPD-448) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLC-6-P)) REACTION-LAYOUT - (UDPGLUCEPIM-RXN (:LEFT-PRIMARIES UDP-GLUCOSE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES UDP-GALACTOSE)) REACTION-LAYOUT - (GALACTURIDYLYLTRANS-RXN (:LEFT-PRIMARIES GALACTOSE-1P UDP-GLUCOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP-GALACTOSE GLC-1-P)) REACTION-LAYOUT - (GALACTOKIN-RXN (:LEFT-PRIMARIES ALPHA-D-GALACTOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GALACTOSE-1P)) REACTION-LIST - RXN-10639 REACTION-LIST - ALDOSE1EPIM-RXN REACTION-LIST - BETA-PHOSPHOGLUCOMUTASE-RXN REACTION-LIST - UDPGLUCEPIM-RXN REACTION-LIST - GALACTURIDYLYLTRANS-RXN REACTION-LIST - GALACTOKIN-RXN SYNONYMS - Leloir pathway // UNIQUE-ID - PWY-3821 TYPES - SUGAR-NUCLEOTIDES TYPES - GALACTOSE-DEGRADATION COMMON-NAME - galactose degradation III CITATIONS - :EV-COMP-AINF:3497824357:liya PREDECESSORS - (UGD-RXN UDPGLUCEPIM-RXN) PREDECESSORS - (UDPGLUCEPIM-RXN UTPHEXPURIDYLYLTRANS-RXN) PREDECESSORS - (UTPHEXPURIDYLYLTRANS-RXN GALACTOKIN-RXN) PREDECESSORS - (GLUC1PURIDYLTRANS-RXN UDPGLUCEPIM-RXN) PREDECESSORS - (SUCROSE-SYNTHASE-RXN UDPGLUCEPIM-RXN) PRIMARIES - (UGD-RXN (UDP-GLUCOSE) (UDP-GLUCURONATE)) PRIMARIES - (SUCROSE-SYNTHASE-RXN (UDP-GLUCOSE) (SUCROSE)) PRIMARIES - (GLUC1PURIDYLTRANS-RXN (UDP-GLUCOSE) (GLC-1-P)) PRIMARIES - (UDPGLUCEPIM-RXN (UDP-GALACTOSE) (UDP-GLUCOSE)) PRIMARIES - (UTPHEXPURIDYLYLTRANS-RXN (GALACTOSE-1P) (UDP-GALACTOSE)) REACTION-LAYOUT - (UGD-RXN (:LEFT-PRIMARIES UDP-GLUCOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP-GLUCURONATE)) REACTION-LAYOUT - (GLUC1PURIDYLTRANS-RXN (:LEFT-PRIMARIES GLC-1-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES UDP-GLUCOSE)) REACTION-LAYOUT - (SUCROSE-SYNTHASE-RXN (:LEFT-PRIMARIES UDP-GLUCOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SUCROSE)) REACTION-LAYOUT - (UDPGLUCEPIM-RXN (:LEFT-PRIMARIES UDP-GLUCOSE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES UDP-GALACTOSE)) REACTION-LAYOUT - (UTPHEXPURIDYLYLTRANS-RXN (:LEFT-PRIMARIES GALACTOSE-1P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP-GALACTOSE)) REACTION-LAYOUT - (GALACTOKIN-RXN (:LEFT-PRIMARIES ALPHA-D-GALACTOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GALACTOSE-1P)) REACTION-LIST - UGD-RXN REACTION-LIST - GLUC1PURIDYLTRANS-RXN REACTION-LIST - SUCROSE-SYNTHASE-RXN REACTION-LIST - UDPGLUCEPIM-RXN REACTION-LIST - UTPHEXPURIDYLYLTRANS-RXN REACTION-LIST - GALACTOKIN-RXN SYNONYMS - UDP-D-galatose biosynthesis (from D-galactose) // UNIQUE-ID - PWY-6299 TYPES - Abscisic-Acid-Biosynthesis TYPES - Aldehyde-Degradation COMMON-NAME - aldehyde oxidation I CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - O-28 CREDITS - |pujar| PATHWAY-LINKS - (CPD-692 PWY-695) PATHWAY-LINKS - (BENZALDEHYDE (PWY-695 . :INCOMING)) PATHWAY-LINKS - (|Aldehydes| (PWY-695 . :INCOMING)) PREDECESSORS - (RXN-8088) PREDECESSORS - (ALDEHYDE-OXIDASE-RXN) PREDECESSORS - (1.2.3.14-RXN) REACTION-LAYOUT - (1.2.3.14-RXN (:LEFT-PRIMARIES CPD-692) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-693)) REACTION-LAYOUT - (RXN-8088 (:LEFT-PRIMARIES BENZALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES BENZOATE)) REACTION-LAYOUT - (ALDEHYDE-OXIDASE-RXN (:LEFT-PRIMARIES |Aldehydes|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Acids|)) REACTION-LIST - 1.2.3.14-RXN REACTION-LIST - RXN-8088 REACTION-LIST - ALDEHYDE-OXIDASE-RXN // UNIQUE-ID - PWYQT-4429 TYPES - CO2-Fixation COMMON-NAME - CO2 fixation into oxaloacetate CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - |tissier| CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - SRI CREDITS - |caspi| PREDECESSORS - (PEPCARBOX-RXN) PRIMARIES - (PEPCARBOX-RXN (CARBON-DIOXIDE) (OXALACETIC_ACID)) REACTION-LAYOUT - (PEPCARBOX-RXN (:LEFT-PRIMARIES OXALACETIC_ACID) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CARBON-DIOXIDE)) REACTION-LIST - PEPCARBOX-RXN // UNIQUE-ID - PWY-1801 TYPES - Formaldehyde-Oxidation COMMON-NAME - formaldehyde oxidation II (glutathione-dependent) CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |caspi| PREDECESSORS - (RXN-2961) PREDECESSORS - (RXN-2962 RXN-2961) PREDECESSORS - (S-FORMYLGLUTATHIONE-HYDROLASE-RXN RXN-2962) PRIMARIES - (RXN-2962 (S-HYDROXYMETHYLGLUTATHIONE) (CPD-548)) PRIMARIES - (RXN-2961 (FORMALDEHYDE) (S-HYDROXYMETHYLGLUTATHIONE)) PRIMARIES - (S-FORMYLGLUTATHIONE-HYDROLASE-RXN (CPD-548) (FORMATE)) PRIMARIES - (1.2.1.1-RXN (FORMALDEHYDE) (CPD-548)) REACTION-LAYOUT - (RXN-2962 (:LEFT-PRIMARIES S-HYDROXYMETHYLGLUTATHIONE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-548)) REACTION-LAYOUT - (RXN-2961 (:LEFT-PRIMARIES S-HYDROXYMETHYLGLUTATHIONE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES FORMALDEHYDE)) REACTION-LAYOUT - (S-FORMYLGLUTATHIONE-HYDROLASE-RXN (:LEFT-PRIMARIES CPD-548) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FORMATE)) REACTION-LIST - RXN-2962 REACTION-LIST - RXN-2961 REACTION-LIST - S-FORMYLGLUTATHIONE-HYDROLASE-RXN SYNONYMS - formaldehyde oxidation II (GSH-dependent) // UNIQUE-ID - PWY-4101 TYPES - SUGAR-ALCOHOLS-DEG COMMON-NAME - sorbitol degradation I CITATIONS - :EV-COMP-AINF:3497824356:liya PREDECESSORS - (RXN-7644) PRIMARIES - (RXN-7644 (SORBITOL) (FRU)) PRIMARIES - (PGLUCISOM-RXN (GLC-6-P) (FRUCTOSE-6P)) PRIMARIES - (F16ALDOLASE-RXN (FRUCTOSE-16-DIPHOSPHATE) (DIHYDROXY-ACETONE-PHOSPHATE GAP)) PRIMARIES - (ALDOSE-6-PHOSPHATE-REDUCTASE-NADPH-RXN (D-SORBITOL-6-P) (GLC-6-P)) PRIMARIES - (6PFRUCTPHOS-RXN (FRUCTOSE-6P) (FRUCTOSE-16-DIPHOSPHATE)) REACTION-LAYOUT - (RXN-7644 (:LEFT-PRIMARIES SORBITOL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRU)) REACTION-LIST - RXN-7644 SYNONYMS - sorbitol utilization // UNIQUE-ID - PWY-4562 TYPES - CYCLITOLS-DEG TYPES - CYCLITOLS COMMON-NAME - lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3) CITATIONS - :EV-COMP-AINF:3497824356:liya IN-PATHWAY - PWY-4765 PATHWAY-LINKS - (CPD-1107 PWY-4541) PREDECESSORS - (RXN-7163 RXN-7184) PREDECESSORS - (RXN-7163 2.7.1.140-RXN) PREDECESSORS - (RXN-7184 2.7.1.139-RXN) PREDECESSORS - (2.7.1.139-RXN) PREDECESSORS - (2.7.1.140-RXN 2.7.1.133-RXN) PREDECESSORS - (2.7.1.133-RXN) PREDECESSORS - (RXN-7185 2.7.1.133-RXN) PREDECESSORS - (RXN-7186 RXN-7185) PRIMARIES - (RXN-7186 (CPD-6661) (MI-HEXAKISPHOSPHATE)) PRIMARIES - (RXN-7163 (CPD-1107) (MI-HEXAKISPHOSPHATE)) PRIMARIES - (RXN-7185 (CPD-505) (CPD-6661)) PRIMARIES - (RXN-7184 (CPD-506) (CPD-1107)) PRIMARIES - (2.7.1.140-RXN (CPD-505) (CPD-1107)) PRIMARIES - (2.7.1.133-RXN (INOSITOL-1-3-4-TRIPHOSPHATE) (CPD-505)) PRIMARIES - (2.7.1.139-RXN (INOSITOL-1-3-4-TRIPHOSPHATE) (CPD-506)) REACTION-LAYOUT - (RXN-7185 (:LEFT-PRIMARIES CPD-505) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6661)) REACTION-LAYOUT - (RXN-7186 (:LEFT-PRIMARIES CPD-6661) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MI-HEXAKISPHOSPHATE)) REACTION-LAYOUT - (RXN-7163 (:LEFT-PRIMARIES CPD-1107) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MI-HEXAKISPHOSPHATE)) REACTION-LAYOUT - (RXN-7184 (:LEFT-PRIMARIES CPD-506) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-1107)) REACTION-LAYOUT - (2.7.1.133-RXN (:LEFT-PRIMARIES INOSITOL-1-3-4-TRIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-505)) REACTION-LAYOUT - (2.7.1.140-RXN (:LEFT-PRIMARIES CPD-505) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-1107)) REACTION-LAYOUT - (2.7.1.139-RXN (:LEFT-PRIMARIES INOSITOL-1-3-4-TRIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-506)) REACTION-LIST - RXN-7185 REACTION-LIST - RXN-7186 REACTION-LIST - RXN-7163 REACTION-LIST - RXN-7184 REACTION-LIST - 2.7.1.133-RXN REACTION-LIST - 2.7.1.140-RXN REACTION-LIST - 2.7.1.139-RXN SUPER-PATHWAYS - PWY-4765 SYNONYMS - lipid-dependent phytic acid biosynthesis II (via Ins(1,3,4)P3) SYNONYMS - lipid-dependent InsP6 biosynthesis II (via Ins(1,3,4)P3) // UNIQUE-ID - PWY-4541 TYPES - CYCLITOLS-DEG TYPES - CYCLITOLS COMMON-NAME - lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3) CITATIONS - :EV-COMP-AINF:3497824356:liya IN-PATHWAY - PWY-4765 PATHWAY-LINKS - (CPD-1107 PWY-4562) PATHWAY-LINKS - (INOSITOL-1-4-5-TRISPHOSPHATE LIPASYN-PWY) PREDECESSORS - (RXN-7182 2.7.1.151-RXN) PREDECESSORS - (2.7.1.151-RXN) PREDECESSORS - (RXN-7162 2.7.1.151-RXN) PREDECESSORS - (RXN-7163 RXN-7162) PRIMARIES - (RXN-7184 (CPD-506) (CPD-1107)) PRIMARIES - (RXN-7182 (INOSITOL-1456-TETRAKISPHOSPHATE) (CPD-534)) PRIMARIES - (RXN-7163 (CPD-1107) (MI-HEXAKISPHOSPHATE)) PRIMARIES - (RXN-7162 (INOSITOL-1456-TETRAKISPHOSPHATE) (CPD-1107)) PRIMARIES - (2.7.1.151-RXN (INOSITOL-1-4-5-TRISPHOSPHATE) (INOSITOL-1456-TETRAKISPHOSPHATE)) REACTION-LAYOUT - (RXN-7182 (:LEFT-PRIMARIES INOSITOL-1456-TETRAKISPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-534)) REACTION-LAYOUT - (2.7.1.151-RXN (:LEFT-PRIMARIES INOSITOL-1-4-5-TRISPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INOSITOL-1456-TETRAKISPHOSPHATE)) REACTION-LAYOUT - (RXN-7162 (:LEFT-PRIMARIES INOSITOL-1456-TETRAKISPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-1107)) REACTION-LAYOUT - (RXN-7163 (:LEFT-PRIMARIES CPD-1107) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MI-HEXAKISPHOSPHATE)) REACTION-LIST - RXN-7182 REACTION-LIST - 2.7.1.151-RXN REACTION-LIST - RXN-7162 REACTION-LIST - RXN-7163 SUPER-PATHWAYS - PWY-4765 SYNONYMS - lipid-dependent phytic acid biosynthesis I (via Ins(1,4,5)P3) SYNONYMS - lipid-dependent InsP6 biosynthesis I (via Ins(1,4,5)P3) // UNIQUE-ID - PWY-4841 TYPES - SUGAR-NUCLEOTIDES TYPES - CYCLITOLS-DEG COMMON-NAME - UDP-D-glucuronate biosynthesis (from myo-inositol) CITATIONS - :EV-COMP-AINF:3497824357:liya KEY-REACTIONS - MYO-INOSITOL-OXYGENASE-RXN PATHWAY-LINKS - (UDP-GLUCURONATE PWY-4861 PWY-4821) PREDECESSORS - (2.7.7.44-RXN GLUCURONOKINASE-RXN) PREDECESSORS - (GLUCURONOKINASE-RXN MYO-INOSITOL-OXYGENASE-RXN) PREDECESSORS - (MYO-INOSITOL-OXYGENASE-RXN) PRIMARIES - (2.7.7.44-RXN (CPD-510) (UDP-GLUCURONATE)) PRIMARIES - (GLUCURONOKINASE-RXN (GLUCURONATE) (CPD-510)) PRIMARIES - (MYO-INOSITOL-OXYGENASE-RXN (MYO-INOSITOL) (GLUCURONATE)) REACTION-LAYOUT - (2.7.7.44-RXN (:LEFT-PRIMARIES CPD-510) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP-GLUCURONATE)) REACTION-LAYOUT - (GLUCURONOKINASE-RXN (:LEFT-PRIMARIES GLUCURONATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-510)) REACTION-LAYOUT - (MYO-INOSITOL-OXYGENASE-RXN (:LEFT-PRIMARIES MYO-INOSITOL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLUCURONATE)) REACTION-LIST - 2.7.7.44-RXN REACTION-LIST - GLUCURONOKINASE-RXN REACTION-LIST - MYO-INOSITOL-OXYGENASE-RXN SYNONYMS - UDP-D-GlcA biosynthesis SYNONYMS - UDP-D-glucuronic acid biosynthesis SYNONYMS - inositol oxidation pathway // UNIQUE-ID - PWY-4781 TYPES - Phytate-Degradation COMMON-NAME - phytate degradation II CITATIONS - :EV-COMP-AINF:3497824357:liya PREDECESSORS - (RXN-7305 RXN-7304) PREDECESSORS - (RXN-7302 RXN-7301) PREDECESSORS - (RXN-7250 RXN-7302) PREDECESSORS - (RXN-7246 RXN-7250) PREDECESSORS - (RXN-7303 RXN-7301) PREDECESSORS - (RXN-7304 RXN-7303) PREDECESSORS - (6-PHYT-RXN) PREDECESSORS - (RXN-7301 6-PHYT-RXN) PRIMARIES - (RXN-7305 (CPD-6783) (CPD-6746)) PRIMARIES - (6-PHYT-RXN (MI-HEXAKISPHOSPHATE) (MI-PENTAKISPHOSPHATE)) PRIMARIES - (RXN-7304 (CPD-6782) (CPD-6783)) PRIMARIES - (RXN-7303 (CPD-6781) (CPD-6782)) PRIMARIES - (RXN-7246 (CPD-6747) (CPD-6746)) PRIMARIES - (RXN-7250 (CPD-6745) (CPD-6747)) PRIMARIES - (RXN-7302 (CPD-6781) (CPD-6745)) PRIMARIES - (RXN-7301 (MI-PENTAKISPHOSPHATE) (CPD-6781)) PRIMARIES - (RXN0-1001 (MI-HEXAKISPHOSPHATE) (CPD-534)) REACTION-LAYOUT - (RXN-7305 (:LEFT-PRIMARIES CPD-6783) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6746)) REACTION-LAYOUT - (6-PHYT-RXN (:LEFT-PRIMARIES MI-HEXAKISPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MI-PENTAKISPHOSPHATE)) REACTION-LAYOUT - (RXN-7246 (:LEFT-PRIMARIES CPD-6747) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6746)) REACTION-LAYOUT - (RXN-7250 (:LEFT-PRIMARIES CPD-6745) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6747)) REACTION-LAYOUT - (RXN-7301 (:LEFT-PRIMARIES MI-PENTAKISPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6781)) REACTION-LAYOUT - (RXN-7302 (:LEFT-PRIMARIES CPD-6781) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6745)) REACTION-LAYOUT - (RXN-7303 (:LEFT-PRIMARIES CPD-6781) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6782)) REACTION-LAYOUT - (RXN-7304 (:LEFT-PRIMARIES CPD-6782) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6783)) REACTION-LIST - RXN-7305 REACTION-LIST - 6-PHYT-RXN REACTION-LIST - RXN-7246 REACTION-LIST - RXN-7250 REACTION-LIST - RXN-7301 REACTION-LIST - RXN-7302 REACTION-LIST - RXN-7303 REACTION-LIST - RXN-7304 // UNIQUE-ID - PWY-4702 TYPES - Phytate-Degradation COMMON-NAME - phytate degradation I CITATIONS - :EV-COMP-AINF:3497824357:liya PREDECESSORS - (RXN-7247 RXN-7241) PREDECESSORS - (RXN-7249 RXN-7247) PREDECESSORS - (RXN-7248 RXN-7247) PREDECESSORS - (RXN-7250 RXN-7248) PREDECESSORS - (RXN-7245 RXN-7249) PREDECESSORS - (RXN-7246 RXN-7250) PREDECESSORS - (RXN-7251 RXN-7250) PREDECESSORS - (RXN-7252 RXN-7251) PREDECESSORS - (RXN-7251 RXN-7245) PREDECESSORS - (RXN-7253 RXN-7246) PREDECESSORS - (RXN-7246 RXN-7245) PREDECESSORS - (RXN-7245 RXN-7244) PREDECESSORS - (RXN-7244 RXN-7243) PREDECESSORS - (RXN-7244 RXN-7242) PREDECESSORS - (RXN-7243 RXN0-1001) PREDECESSORS - (RXN0-1001) PREDECESSORS - (RXN-7241) PREDECESSORS - (RXN-7242 RXN-7241) PRIMARIES - (RXN-7247 (CPD-6741) (CPD-6743)) PRIMARIES - (RXN-7248 (CPD-6743) (CPD-6745)) PRIMARIES - (RXN-7249 (CPD-6743) (CPD-6744)) PRIMARIES - (RXN-7250 (CPD-6745) (CPD-6747)) PRIMARIES - (RXN-7251 (CPD-6747) (D-MYO-INOSITOL-1-MONOPHOSPHATE)) PRIMARIES - (RXN-7252 (D-MYO-INOSITOL-1-MONOPHOSPHATE) (MYO-INOSITOL)) PRIMARIES - (RXN-7253 (CPD-6746) (MYO-INOSITOL)) PRIMARIES - (RXN-7246 (CPD-6747) (CPD-6746)) PRIMARIES - (RXN-7245 (CPD-6744) (CPD-6747)) PRIMARIES - (RXN-7244 (CPD-6742) (CPD-6744)) PRIMARIES - (RXN-7243 (CPD-534) (CPD-6742)) PRIMARIES - (RXN-7242 (CPD-6741) (CPD-6742)) PRIMARIES - (RXN0-1001 (MI-HEXAKISPHOSPHATE) (CPD-534)) PRIMARIES - (RXN-7241 (MI-HEXAKISPHOSPHATE) (CPD-6741)) REACTION-LAYOUT - (RXN0-1001 (:LEFT-PRIMARIES MI-HEXAKISPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-534)) REACTION-LAYOUT - (RXN-7241 (:LEFT-PRIMARIES MI-HEXAKISPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6741)) REACTION-LAYOUT - (RXN-7242 (:LEFT-PRIMARIES CPD-6741) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6742)) REACTION-LAYOUT - (RXN-7243 (:LEFT-PRIMARIES CPD-534) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6742)) REACTION-LAYOUT - (RXN-7244 (:LEFT-PRIMARIES CPD-6742) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6744)) REACTION-LAYOUT - (RXN-7245 (:LEFT-PRIMARIES CPD-6744) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6747)) REACTION-LAYOUT - (RXN-7246 (:LEFT-PRIMARIES CPD-6747) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6746)) REACTION-LAYOUT - (RXN-7247 (:LEFT-PRIMARIES CPD-6741) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6743)) REACTION-LAYOUT - (RXN-7248 (:LEFT-PRIMARIES CPD-6743) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6745)) REACTION-LAYOUT - (RXN-7249 (:LEFT-PRIMARIES CPD-6743) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6744)) REACTION-LAYOUT - (RXN-7250 (:LEFT-PRIMARIES CPD-6745) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6747)) REACTION-LAYOUT - (RXN-7252 (:LEFT-PRIMARIES D-MYO-INOSITOL-1-MONOPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MYO-INOSITOL)) REACTION-LAYOUT - (RXN-7253 (:LEFT-PRIMARIES CPD-6746) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MYO-INOSITOL)) REACTION-LAYOUT - (RXN-7251 (:LEFT-PRIMARIES CPD-6747) (:DIRECTION :L2R) (:RIGHT-PRIMARIES D-MYO-INOSITOL-1-MONOPHOSPHATE)) REACTION-LIST - RXN0-1001 REACTION-LIST - RXN-7241 REACTION-LIST - RXN-7242 REACTION-LIST - RXN-7243 REACTION-LIST - RXN-7244 REACTION-LIST - RXN-7245 REACTION-LIST - RXN-7246 REACTION-LIST - RXN-7247 REACTION-LIST - RXN-7248 REACTION-LIST - RXN-7249 REACTION-LIST - RXN-7250 REACTION-LIST - RXN-7252 REACTION-LIST - RXN-7253 REACTION-LIST - RXN-7251 // UNIQUE-ID - PWY-5461 TYPES - ALKALOIDS COMMON-NAME - betanidin degradation CITATIONS - :EV-COMP-AINF:3497824359:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |hartmut| PREDECESSORS - (RXN-8635) PRIMARIES - (RXN-8635 (CPD-8653) (CPD-8890)) REACTION-LAYOUT - (RXN-8635 (:LEFT-PRIMARIES CPD-8653) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8890 CPD-8653)) REACTION-LIST - RXN-8635 // UNIQUE-ID - PWY-116 TYPES - PHENYLPROPANOID-DERIVATIVE-DEG TYPES - LIGNIN-SYN COMMON-NAME - coniferin metabolism CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |hartmut| PATHWAY-LINKS - (CONIFERYL-ALCOHOL PWY-361) PREDECESSORS - (CONIFERIN-BETA-GLUCOSIDASE-RXN 2.4.1.111-RXN) PREDECESSORS - (2.4.1.111-RXN CONIFERIN-BETA-GLUCOSIDASE-RXN) PRIMARIES - (CONIFERIN-BETA-GLUCOSIDASE-RXN (CPD-1777) (CONIFERYL-ALCOHOL)) PRIMARIES - (2.4.1.111-RXN (CONIFERYL-ALCOHOL) (CPD-1777)) REACTION-LAYOUT - (CONIFERIN-BETA-GLUCOSIDASE-RXN (:LEFT-PRIMARIES CPD-1777) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CONIFERYL-ALCOHOL)) REACTION-LAYOUT - (2.4.1.111-RXN (:LEFT-PRIMARIES CONIFERYL-ALCOHOL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-1777)) REACTION-LIST - CONIFERIN-BETA-GLUCOSIDASE-RXN REACTION-LIST - 2.4.1.111-RXN // UNIQUE-ID - PWY-695 TYPES - Abscisic-Acid-Biosynthesis TYPES - Carotenoid-Degradation COMMON-NAME - abscisic acid biosynthesis CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |tissier| PATHWAY-LINKS - (CPD1F-133 PWY-5945) PATHWAY-LINKS - (CPD-693 PWY-5271) PREDECESSORS - (RXN-8074 RXN1F-155) PREDECESSORS - (1.2.3.14-RXN 1.1.1.288-RXN) PREDECESSORS - (1.1.1.288-RXN RXN-698) PREDECESSORS - (RXN-698 RXN-8074) PRIMARIES - (RXN-8074 (CPD1F-135) (CPD-7424)) PRIMARIES - (RXN-698 (CPD-7424) (CPD-7279)) PRIMARIES - (1.1.1.288-RXN (CPD-7279) (CPD-692)) REACTION-LAYOUT - (RXN1F-155 (:LEFT-PRIMARIES CPD1F-133) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-135)) REACTION-LAYOUT - (RXN-8074 (:LEFT-PRIMARIES CPD1F-135) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7424)) REACTION-LAYOUT - (RXN-698 (:LEFT-PRIMARIES CPD-7424) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7279)) REACTION-LAYOUT - (1.2.3.14-RXN (:LEFT-PRIMARIES CPD-692) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-693)) REACTION-LAYOUT - (1.1.1.288-RXN (:LEFT-PRIMARIES CPD-7279) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-692)) REACTION-LIST - RXN1F-155 REACTION-LIST - RXN-8074 REACTION-LIST - RXN-698 REACTION-LIST - 1.2.3.14-RXN REACTION-LIST - 1.1.1.288-RXN SYNONYMS - ABA synthesis // UNIQUE-ID - PWY-5886 TYPES - AROMATIC-COMPOUNDS-BIOSYN COMMON-NAME - 4-hydroxyphenylpyruvate biosynthesis CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (P-HYDROXY-PHENYLPYRUVATE PWY-5754 PWY-1422) PREDECESSORS - (TYROSINE-AMINOTRANSFERASE-RXN) REACTION-LAYOUT - (TYROSINE-AMINOTRANSFERASE-RXN (:LEFT-PRIMARIES TYR) (:DIRECTION :L2R) (:RIGHT-PRIMARIES P-HYDROXY-PHENYLPYRUVATE)) REACTION-LIST - TYROSINE-AMINOTRANSFERASE-RXN // UNIQUE-ID - PWY-5751 TYPES - PHENYLPROPANOID-SYN TYPES - AROMATIC-COMPOUNDS-BIOSYN COMMON-NAME - phenylethanol biosynthesis CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - O-27 CREDITS - |pujar| PATHWAY-LINKS - (PHE PHESYN) PREDECESSORS - (RXN-7700 RXN-8990) PREDECESSORS - (RXN-7700 AMINEPHEN-RXN) PREDECESSORS - (AMINEPHEN-RXN PHENYLALANINE-DECARBOXYLASE-RXN) PRIMARIES - (RXN-8990 (PHE) NIL) REACTION-LAYOUT - (RXN-8990 (:LEFT-PRIMARIES PHE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHENYLACETALDEHYDE)) REACTION-LAYOUT - (RXN-7700 (:LEFT-PRIMARIES PHENYLACETALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7035)) REACTION-LAYOUT - (AMINEPHEN-RXN (:LEFT-PRIMARIES PHENYLETHYLAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHENYLACETALDEHYDE)) REACTION-LAYOUT - (PHENYLALANINE-DECARBOXYLASE-RXN (:LEFT-PRIMARIES PHE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHENYLETHYLAMINE)) REACTION-LIST - RXN-8990 REACTION-LIST - RXN-7700 REACTION-LIST - AMINEPHEN-RXN REACTION-LIST - PHENYLALANINE-DECARBOXYLASE-RXN SYNONYMS - phenyacetaldehyde biosynthesis SYNONYMS - phenylacetaldehyde and phenylethanol biosynthesis // UNIQUE-ID - PWY-5901 TYPES - AROMATIC-COMPOUNDS-BIOSYN COMMON-NAME - 2,3-dihydroxybenzoate biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - |keseler| CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (CHORISMATE ARO-PWY) PREDECESSORS - (ISOCHORMAT-RXN ISOCHORSYN-RXN) PREDECESSORS - (DHBDEHYD-RXN ISOCHORMAT-RXN) REACTION-LAYOUT - (DHBDEHYD-RXN (:LEFT-PRIMARIES DIHYDRO-DIOH-BENZOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-3-DIHYDROXYBENZOATE)) REACTION-LAYOUT - (ISOCHORMAT-RXN (:LEFT-PRIMARIES ISOCHORISMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDRO-DIOH-BENZOATE)) REACTION-LAYOUT - (ISOCHORSYN-RXN (:LEFT-PRIMARIES CHORISMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ISOCHORISMATE)) REACTION-LIST - DHBDEHYD-RXN REACTION-LIST - ISOCHORMAT-RXN REACTION-LIST - ISOCHORSYN-RXN // UNIQUE-ID - PWY-5754 TYPES - 4-Hydroxybenzoate-Biosynthesis COMMON-NAME - 4-hydroxybenzoate biosynthesis I (eukaryotes) CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (P-HYDROXY-PHENYLPYRUVATE PWY-5886) PATHWAY-LINKS - (CHORISMATE ARO-PWY) PREDECESSORS - (RXN3O-1118 HYDROXYPHENYLPYRUVATE-REDUCTASE-RXN) PREDECESSORS - (3.1.2.23-RXN RXN3O-1120) PREDECESSORS - (RXN3O-1120 4-COUMARATE--COA-LIGASE-RXN) PREDECESSORS - (4-COUMARATE--COA-LIGASE-RXN RXN3O-1118) PRIMARIES - (3.1.2.23-RXN (CPD-201) (|4-hydroxybenzoate|)) PRIMARIES - (CHORPYRLY-RXN (CHORISMATE) (|4-hydroxybenzoate|)) REACTION-LAYOUT - (HYDROXYPHENYLPYRUVATE-REDUCTASE-RXN (:LEFT-PRIMARIES 4-HYDROXYPHENYLLACTATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES P-HYDROXY-PHENYLPYRUVATE)) REACTION-LAYOUT - (4-COUMARATE--COA-LIGASE-RXN (:LEFT-PRIMARIES COUMARATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES P-COUMAROYL-COA)) REACTION-LAYOUT - (3.1.2.23-RXN (:LEFT-PRIMARIES CPD-201) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |4-hydroxybenzoate|)) REACTION-LAYOUT - (RXN3O-1120 (:LEFT-PRIMARIES P-COUMAROYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-201)) REACTION-LAYOUT - (RXN3O-1118 (:LEFT-PRIMARIES 4-HYDROXYPHENYLLACTATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES COUMARATE)) REACTION-LIST - HYDROXYPHENYLPYRUVATE-REDUCTASE-RXN REACTION-LIST - 4-COUMARATE--COA-LIGASE-RXN REACTION-LIST - 3.1.2.23-RXN REACTION-LIST - RXN3O-1120 REACTION-LIST - RXN3O-1118 SYNONYMS - p-hydroxybenzoate biosynthesis I (eukaryotes) // UNIQUE-ID - PWY-6164 TYPES - 3-Dehydroquinate-Biosynthesis COMMON-NAME - 3-dehydroquinate biosynthesis I CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (ERYTHROSE-4P NONOXIPENT-PWY) PATHWAY-LINKS - (CHORISMATE PWY-3462 TRPSYN-PWY FOLSYN-PWY PWY-5791) PREDECESSORS - (DAHPSYN-RXN) PREDECESSORS - (3-DEHYDROQUINATE-SYNTHASE-RXN DAHPSYN-RXN) REACTION-LAYOUT - (DAHPSYN-RXN (:LEFT-PRIMARIES ERYTHROSE-4P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-DEOXY-D-ARABINO-HEPTULOSONATE-7-P)) REACTION-LAYOUT - (3-DEHYDROQUINATE-SYNTHASE-RXN (:LEFT-PRIMARIES 3-DEOXY-D-ARABINO-HEPTULOSONATE-7-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DEHYDROQUINATE)) REACTION-LIST - DAHPSYN-RXN REACTION-LIST - 3-DEHYDROQUINATE-SYNTHASE-RXN // UNIQUE-ID - PWY-3261 TYPES - PLANT-CELL-STRUCTURE TYPES - Rhamnose-Biosynthesis COMMON-NAME - UDP-L-rhamnose biosynthesis CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |tissier| PREDECESSORS - (RXN-5481 UDP-GLUCOSE-46-DEHYDRATASE-RXN) PREDECESSORS - (UDP-GLUCOSE-46-DEHYDRATASE-RXN) PRIMARIES - (RXN-5482 (UDP-GLUCOSE) (UDP-L-RHAMNOSE)) REACTION-LAYOUT - (RXN-5481 (:LEFT-PRIMARIES CPD-663) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP-L-RHAMNOSE)) REACTION-LAYOUT - (UDP-GLUCOSE-46-DEHYDRATASE-RXN (:LEFT-PRIMARIES UDP-GLUCOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-663)) REACTION-LIST - RXN-5481 REACTION-LIST - UDP-GLUCOSE-46-DEHYDRATASE-RXN // UNIQUE-ID - PWY-1121 TYPES - PLANT-CELL-STRUCTURE TYPES - Metabolic-Clusters COMMON-NAME - suberin biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya PATHWAY-LINKS - (PHE PWY-3462) PATHWAY-LINKS - (OLEATE-CPD PWY-5147) PREDECESSORS - (TYRAMINE-N-FERULOYLTRANSFERASE-RXN CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN) PREDECESSORS - (TYRAMINE-N-FERULOYLTRANSFERASE-RXN 6.2.1.34-RXN) PREDECESSORS - (TRANS-CINNAMATE-4-MONOOXYGENASE-RXN PHENYLALANINE-AMMONIA-LYASE-RXN) PREDECESSORS - (RXN-1103 TRANS-CINNAMATE-4-MONOOXYGENASE-RXN) PREDECESSORS - (RXN-1104 RXN-1103) PREDECESSORS - (RXN-1126 RXN-1103) PREDECESSORS - (CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN RXN-1126) PREDECESSORS - (6.2.1.34-RXN RXN-1104) PREDECESSORS - (RXN-2121 RXN-1063) PREDECESSORS - (RXN-2122 RXN-2121) PRIMARIES - (TYRAMINE-N-FERULOYLTRANSFERASE-RXN (FERULOYL-COA) (CPD-440)) REACTION-LAYOUT - (6.2.1.34-RXN (:LEFT-PRIMARIES FERULIC-ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FERULOYL-COA)) REACTION-LAYOUT - (RXN-2122 (:LEFT-PRIMARIES 18-OXOOLEATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OCTADEC-9-ENE-118-DIOIC-ACID)) REACTION-LAYOUT - (RXN-2121 (:LEFT-PRIMARIES 18-HYDROXYOLEATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 18-OXOOLEATE)) REACTION-LAYOUT - (RXN-1063 (:LEFT-PRIMARIES OLEATE-CPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 18-HYDROXYOLEATE)) REACTION-LAYOUT - (TYRAMINE-N-FERULOYLTRANSFERASE-RXN (:LEFT-PRIMARIES FERULOYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-440)) REACTION-LAYOUT - (RXN-1103 (:LEFT-PRIMARIES COUMARATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-676)) REACTION-LAYOUT - (CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN (:LEFT-PRIMARIES CAFFEOYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FERULOYL-COA)) REACTION-LAYOUT - (RXN-1126 (:LEFT-PRIMARIES CPD-676) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CAFFEOYL-COA)) REACTION-LAYOUT - (RXN-1104 (:LEFT-PRIMARIES CPD-676) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FERULIC-ACID)) REACTION-LAYOUT - (TRANS-CINNAMATE-4-MONOOXYGENASE-RXN (:LEFT-PRIMARIES CPD-674) (:DIRECTION :L2R) (:RIGHT-PRIMARIES COUMARATE)) REACTION-LAYOUT - (PHENYLALANINE-AMMONIA-LYASE-RXN (:LEFT-PRIMARIES PHE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-674)) REACTION-LIST - 6.2.1.34-RXN REACTION-LIST - RXN-2122 REACTION-LIST - RXN-2121 REACTION-LIST - RXN-1063 REACTION-LIST - TYRAMINE-N-FERULOYLTRANSFERASE-RXN REACTION-LIST - RXN-1103 REACTION-LIST - CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN REACTION-LIST - RXN-1126 REACTION-LIST - RXN-1104 REACTION-LIST - TRANS-CINNAMATE-4-MONOOXYGENASE-RXN REACTION-LIST - PHENYLALANINE-AMMONIA-LYASE-RXN // UNIQUE-ID - PWY-1001 TYPES - PRIMARY-CELL-WALL TYPES - SECONDARY-CELL-WALL TYPES - CARBO-BIOSYNTHESIS COMMON-NAME - cellulose biosynthesis CITATIONS - :EV-COMP-AINF:3497824358:liya POLYMERIZATION-LINKS - (|1-4-beta-D-Glucan| CELLULOSE-SYNTHASE-UDP-FORMING-RXN CELLULOSE-SYNTHASE-UDP-FORMING-RXN) PREDECESSORS - (CELLULOSE-SYNTHASE-UDP-FORMING-RXN) PRIMARIES - (CELLULOSE-SYNTHASE-UDP-FORMING-RXN (|1-4-beta-D-Glucan|) (|1-4-beta-D-Glucan|)) REACTION-LAYOUT - (RXN-2043 (:LEFT-PRIMARIES |Long-linear-glucans|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Short-glucans| |Short-glucans|)) REACTION-LAYOUT - (CELLULOSE-SYNTHASE-UDP-FORMING-RXN (:LEFT-PRIMARIES |1-4-beta-D-Glucan|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |1-4-beta-D-Glucan|)) REACTION-LIST - RXN-2043 REACTION-LIST - CELLULOSE-SYNTHASE-UDP-FORMING-RXN // UNIQUE-ID - PWY-1061 TYPES - PRIMARY-CELL-WALL TYPES - CARBO-BIOSYNTHESIS COMMON-NAME - homogalacturonan biosynthesis CITATIONS - :EV-COMP-AINF:3497824358:liya PATHWAY-LINKS - (UDP-D-GALACTURONATE PWY-4861) POLYMERIZATION-LINKS - (|1-4-alpha-D-galacturonosyl| 2.4.1.43-RXN 2.4.1.43-RXN) PREDECESSORS - (RXN-2081 2.4.1.43-RXN) PRIMARIES - (RXN-2081 (|1-4-alpha-D-galacturonosyl|) (|Methylesterified-homogalacturonan|)) PRIMARIES - (UDP-GLUCURONATE-4-EPIMERASE-RXN (UDP-GLUCURONATE) (UDP-D-GALACTURONATE)) REACTION-LAYOUT - (RXN-2081 (:LEFT-PRIMARIES |1-4-alpha-D-galacturonosyl|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Methylesterified-homogalacturonan|)) REACTION-LAYOUT - (2.4.1.43-RXN (:LEFT-PRIMARIES UDP-D-GALACTURONATE |1-4-alpha-D-galacturonosyl|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |1-4-alpha-D-galacturonosyl|)) REACTION-LIST - RXN-2081 REACTION-LIST - 2.4.1.43-RXN SYNONYMS - pectin biosynthesis // UNIQUE-ID - PWY-282 TYPES - EPIDERMAL-STRUCTURE TYPES - Lipid-Biosynthesis COMMON-NAME - cuticular wax biosynthesis CITATIONS - :EV-COMP-AINF:3497824357:liya PATHWAY-LINKS - (VERY-LONG-CHAIN-FATTY-ACYL-COA (PWY-5080 . :INCOMING)) PREDECESSORS - (RXN-1023 RXN-1022) PREDECESSORS - (RXN-1022 RXN-1025) PREDECESSORS - (RXNQT-4193 RXNQT-4192) PREDECESSORS - (RXNQT-4192) PREDECESSORS - (RXN-1025 RXN-1021) PRIMARIES - (RXN-1023 (|Secondary-Alcohols|) (LONG-CHAIN-KETONE)) PRIMARIES - (RXNQT-4193 (|aprimaryalcohol|) (|Wax-Esters|)) PRIMARIES - (RXNQT-4192 (VERY-LONG-CHAIN-FATTY-ACYL-COA) (|aprimaryalcohol|)) PRIMARIES - (ICOSANOYL-COA-SYNTHASE-RXN (STEAROYL-COA) (CPD-9965)) REACTION-LAYOUT - (RXNQT-4193 (:LEFT-PRIMARIES |aprimaryalcohol|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Wax-Esters|)) REACTION-LAYOUT - (RXNQT-4192 (:LEFT-PRIMARIES VERY-LONG-CHAIN-FATTY-ACYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |aprimaryalcohol|)) REACTION-LAYOUT - (RXN-1025 (:LEFT-PRIMARIES |Fatty-Aldehydes|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Alkanes|)) REACTION-LAYOUT - (RXN-1023 (:LEFT-PRIMARIES |Secondary-Alcohols|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES LONG-CHAIN-KETONE)) REACTION-LAYOUT - (RXN-1022 (:LEFT-PRIMARIES |Alkanes|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Secondary-Alcohols|)) REACTION-LAYOUT - (RXN-1021 (:LEFT-PRIMARIES |Fatty-Aldehydes|) (:DIRECTION :R2L) (:RIGHT-PRIMARIES VERY-LONG-CHAIN-FATTY-ACYL-COA)) REACTION-LIST - RXNQT-4193 REACTION-LIST - RXNQT-4192 REACTION-LIST - RXN-1025 REACTION-LIST - RXN-1023 REACTION-LIST - RXN-1022 REACTION-LIST - RXN-1021 // UNIQUE-ID - PWY-5800 TYPES - SECONDARY-CELL-WALL COMMON-NAME - xylan biosynthesis CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |karthik| PATHWAY-LINKS - (UDP-D-XYLOSE PWY-4821) POLYMERIZATION-LINKS - (14-BETA-D-XYLANS RXN-9104 RXN-9104) PREDECESSORS - (RXN-9094 RXN-9104) PREDECESSORS - (RXN-9093 RXN-9104) PREDECESSORS - (RXN-9104) PRIMARIES - (RXN-9104 (UDP-D-XYLOSE 14-BETA-D-XYLANS) (14-BETA-D-XYLANS)) PRIMARIES - (RXN-9094 (14-BETA-D-XYLANS) (GLUCURONOXYLAN-D-GLUCURONATE)) PRIMARIES - (RXN-9093 (14-BETA-D-XYLANS) (CPD-9600)) REACTION-LAYOUT - (RXN-9094 (:LEFT-PRIMARIES 14-BETA-D-XYLANS) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLUCURONOXYLAN-D-GLUCURONATE)) REACTION-LAYOUT - (RXN-9093 (:LEFT-PRIMARIES 14-BETA-D-XYLANS) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9600)) REACTION-LAYOUT - (RXN-9104 (:LEFT-PRIMARIES 14-BETA-D-XYLANS UDP-D-XYLOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 14-BETA-D-XYLANS)) REACTION-LIST - RXN-9094 REACTION-LIST - RXN-9093 REACTION-LIST - RXN-9104 // UNIQUE-ID - PWY-361 TYPES - LIGNIN-SYN TYPES - SECONDARY-CELL-WALL COMMON-NAME - phenylpropanoid biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya PATHWAY-LINKS - (CONIFERYL-ALCOHOL PWY-116) PATHWAY-LINKS - (SINAPALDEHYDE (PWY-5168 . :OUTGOING)) PATHWAY-LINKS - (CONIFERYL-ALDEHYDE PWY-83 PWY-5168) PATHWAY-LINKS - (COUMARATE PWY1F-467) PREDECESSORS - (CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN RXN-2622) PREDECESSORS - (CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN RXN-2621) PREDECESSORS - (RXN-2602 RXN-1106) PREDECESSORS - (RXN-1125 RXN-1143) PREDECESSORS - (RXN-1143 RXN-1142) PREDECESSORS - (RXN-1142 RXN-1106) PREDECESSORS - (RXN-1106 CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN) PREDECESSORS - (RXN-1101 4-COUMARATE--COA-LIGASE-RXN) PREDECESSORS - (RXN-1102 RXN-1101) PREDECESSORS - (RXN-2601 4-COUMARATE--COA-LIGASE-RXN) PREDECESSORS - (1.14.13.36-RXN RXN-2601) PREDECESSORS - (2.3.1.133-RXN 4-COUMARATE--COA-LIGASE-RXN) PREDECESSORS - (RXN-2581 2.3.1.133-RXN) PREDECESSORS - (RXN-2622 1.14.13.36-RXN) PREDECESSORS - (RXN-2621 RXN-2581) REACTION-LAYOUT - (1.14.13.36-RXN (:LEFT-PRIMARIES 4-COUMAROYLQUINATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CAFFEOYLQUINATE)) REACTION-LAYOUT - (RXN-2622 (:LEFT-PRIMARIES CAFFEOYLQUINATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CAFFEOYL-COA)) REACTION-LAYOUT - (RXN-2621 (:LEFT-PRIMARIES CAFFEOYLSHIKIMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CAFFEOYL-COA)) REACTION-LAYOUT - (RXN-2602 (:LEFT-PRIMARIES CONIFERYL-ALCOHOL) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CONIFERYL-ALDEHYDE)) REACTION-LAYOUT - (2.3.1.133-RXN (:LEFT-PRIMARIES P-COUMAROYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-412)) REACTION-LAYOUT - (RXN-2601 (:LEFT-PRIMARIES P-COUMAROYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 4-COUMAROYLQUINATE)) REACTION-LAYOUT - (RXN-2581 (:LEFT-PRIMARIES CPD-412) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CAFFEOYLSHIKIMATE)) REACTION-LAYOUT - (RXN-1143 (:LEFT-PRIMARIES 5-HYDROXY-CONIFERALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SINAPALDEHYDE)) REACTION-LAYOUT - (RXN-1142 (:LEFT-PRIMARIES CONIFERYL-ALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-HYDROXY-CONIFERALDEHYDE)) REACTION-LAYOUT - (CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN (:LEFT-PRIMARIES CAFFEOYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FERULOYL-COA)) REACTION-LAYOUT - (RXN-1125 (:LEFT-PRIMARIES SINAPALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SINAPYL-ALCOHOL)) REACTION-LAYOUT - (RXN-1102 (:LEFT-PRIMARIES COUMARALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES COUMARYL-ALCOHOL)) REACTION-LAYOUT - (RXN-1106 (:LEFT-PRIMARIES FERULOYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CONIFERYL-ALDEHYDE)) REACTION-LAYOUT - (RXN-1101 (:LEFT-PRIMARIES P-COUMAROYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES COUMARALDEHYDE)) REACTION-LAYOUT - (4-COUMARATE--COA-LIGASE-RXN (:LEFT-PRIMARIES COUMARATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES P-COUMAROYL-COA)) REACTION-LIST - 1.14.13.36-RXN REACTION-LIST - RXN-2622 REACTION-LIST - RXN-2621 REACTION-LIST - RXN-2602 REACTION-LIST - 2.3.1.133-RXN REACTION-LIST - RXN-2601 REACTION-LIST - RXN-2581 REACTION-LIST - RXN-1143 REACTION-LIST - RXN-1142 REACTION-LIST - CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN REACTION-LIST - RXN-1125 REACTION-LIST - RXN-1102 REACTION-LIST - RXN-1106 REACTION-LIST - RXN-1101 REACTION-LIST - 4-COUMARATE--COA-LIGASE-RXN SYNONYMS - monolignol biosynthesis SYNONYMS - lignin biosynthesis // UNIQUE-ID - PWY-5912 TYPES - Siderophores-Biosynthesis COMMON-NAME - 2'-deoxymugineic acid phytosiderophore biosynthesis CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - O-27 CREDITS - |pujar| PATHWAY-LINKS - (CPD-7227 PWY-5934) PREDECESSORS - (1.1.1.285-RXN 2.6.1.80-RXN) PREDECESSORS - (2.6.1.80-RXN 2.5.1.43-RXN) PREDECESSORS - (2.5.1.43-RXN S-ADENMETSYN-RXN) PRIMARIES - (1.1.1.285-RXN (CPD-7228) (CPD-7227)) REACTION-LAYOUT - (1.1.1.285-RXN (:LEFT-PRIMARIES CPD-7228) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7227)) REACTION-LAYOUT - (2.6.1.80-RXN (:LEFT-PRIMARIES CPD-463) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7228)) REACTION-LAYOUT - (2.5.1.43-RXN (:LEFT-PRIMARIES S-ADENOSYLMETHIONINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-463)) REACTION-LAYOUT - (S-ADENMETSYN-RXN (:LEFT-PRIMARIES MET ATP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES S-ADENOSYLMETHIONINE)) REACTION-LIST - 1.1.1.285-RXN REACTION-LIST - 2.6.1.80-RXN REACTION-LIST - 2.5.1.43-RXN REACTION-LIST - S-ADENMETSYN-RXN SYNONYMS - DMA biosynthesis SYNONYMS - Fe acquisition SYNONYMS - iron acquisition SYNONYMS - strategy II Fe-acquisition // UNIQUE-ID - PWY-735 TYPES - FATTY-ACID-DERIVATIVE-SYN TYPES - Jasmonates-Biosynthesis COMMON-NAME - jasmonic acid biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |zhang| PREDECESSORS - (RXN-745 RXN-10708) PREDECESSORS - (RXN-10708 RXN-10701) PREDECESSORS - (RXN-10701 RXN-10703) PREDECESSORS - (RXN-10703 RXN-10705) PREDECESSORS - (RXN-10705 RXN-10707) PREDECESSORS - (RXN-10707 RXN-10700) PREDECESSORS - (RXN-10700 RXN-10702) PREDECESSORS - (RXN-10702 RXN-10704) PREDECESSORS - (RXN-10704 RXN-10706) PREDECESSORS - (RXN-10706 RXN-10699) PREDECESSORS - (RXN-10699 RXN-10698) PREDECESSORS - (RXN-10698 RXN-10697) PREDECESSORS - (RXN-10697 RXN-10696) PREDECESSORS - (RXN-10696 RXN-10695) PREDECESSORS - (RXN-10695 12-OXOPHYTODIENOATE-REDUCTASE-RXN) PREDECESSORS - (RXN1F-19 RXN-1321) PREDECESSORS - (ALLENE-OXIDE-CYCLASE-RXN RXN1F-19) PREDECESSORS - (12-OXOPHYTODIENOATE-REDUCTASE-RXN ALLENE-OXIDE-CYCLASE-RXN) PRIMARIES - (RXN-10708 (CPD-11529) (CPD-731)) PRIMARIES - (RXN-10695 (CPD-730) (CPD-11517)) REACTION-LAYOUT - (RXN-10708 (:LEFT-PRIMARIES CPD-11529) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-731)) REACTION-LAYOUT - (RXN-10706 (:LEFT-PRIMARIES CPD-11521) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-11522)) REACTION-LAYOUT - (RXN-10707 (:LEFT-PRIMARIES CPD-11525) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-11526)) REACTION-LAYOUT - (RXN-10696 (:LEFT-PRIMARIES CPD-11517) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-11518)) REACTION-LAYOUT - (RXN-10701 (:LEFT-PRIMARIES CPD-11528) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-11529)) REACTION-LAYOUT - (RXN-10700 (:LEFT-PRIMARIES CPD-11524) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-11525)) REACTION-LAYOUT - (RXN-10699 (:LEFT-PRIMARIES CPD-11520) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-11521)) REACTION-LAYOUT - (RXN-10703 (:LEFT-PRIMARIES CPD-11527) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-11528)) REACTION-LAYOUT - (RXN-10702 (:LEFT-PRIMARIES CPD-11523) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-11524)) REACTION-LAYOUT - (RXN-10698 (:LEFT-PRIMARIES CPD-11519) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-11520)) REACTION-LAYOUT - (RXN-10705 (:LEFT-PRIMARIES CPD-11526) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-11527)) REACTION-LAYOUT - (RXN-10704 (:LEFT-PRIMARIES CPD-11522) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-11523)) REACTION-LAYOUT - (RXN-10697 (:LEFT-PRIMARIES CPD-11518) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-11519)) REACTION-LAYOUT - (RXN-10695 (:LEFT-PRIMARIES CPD-730) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-11517)) REACTION-LAYOUT - (RXN-1321 (:LEFT-PRIMARIES LINOLENIC_ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-725)) REACTION-LAYOUT - (RXN1F-19 (:LEFT-PRIMARIES CPD-725) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-728)) REACTION-LAYOUT - (12-OXOPHYTODIENOATE-REDUCTASE-RXN (:LEFT-PRIMARIES CPD-730) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CPD-729)) REACTION-LAYOUT - (ALLENE-OXIDE-CYCLASE-RXN (:LEFT-PRIMARIES CPD-728) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-729)) REACTION-LAYOUT - (RXN-745 (:LEFT-PRIMARIES CPD-731) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-734)) REACTION-LIST - RXN-10708 REACTION-LIST - RXN-10706 REACTION-LIST - RXN-10707 REACTION-LIST - RXN-10696 REACTION-LIST - RXN-10701 REACTION-LIST - RXN-10700 REACTION-LIST - RXN-10699 REACTION-LIST - RXN-10703 REACTION-LIST - RXN-10702 REACTION-LIST - RXN-10698 REACTION-LIST - RXN-10705 REACTION-LIST - RXN-10704 REACTION-LIST - RXN-10697 REACTION-LIST - RXN-10695 REACTION-LIST - RXN-1321 REACTION-LIST - RXN1F-19 REACTION-LIST - 12-OXOPHYTODIENOATE-REDUCTASE-RXN REACTION-LIST - ALLENE-OXIDE-CYCLASE-RXN REACTION-LIST - RXN-745 SYNONYMS - jasmonate biosynthesis // UNIQUE-ID - PWY-6303 TYPES - Interconversion TYPES - Auxin-Biosynthesis COMMON-NAME - methyl indole-3-acetate interconversion CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |dreher| PATHWAY-LINKS - (INDOLE_ACETATE_AUXIN PWY-581) PREDECESSORS - (RXN-9825 RXN-10711) PREDECESSORS - (RXN-10711 RXN-9825) PRIMARIES - (RXN-9825 (INDOLE_ACETATE_AUXIN) (CPD-10546)) REACTION-LAYOUT - (RXN-10711 (:LEFT-PRIMARIES CPD-10546) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INDOLE_ACETATE_AUXIN)) REACTION-LAYOUT - (RXN-9825 (:LEFT-PRIMARIES INDOLE_ACETATE_AUXIN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-10546)) REACTION-LIST - RXN-10711 REACTION-LIST - RXN-9825 SYNONYMS - MeIAA interconversion SYNONYMS - Methyl IAA biosynthesis // UNIQUE-ID - PWY-581 TYPES - Auxin-Biosynthesis COMMON-NAME - IAA biosynthesis I CITATIONS - :EV-COMP-AINF:3497824356:liya PATHWAY-LINKS - (INDOLE-3-GLYCEROL-P TRPSYN-PWY) PREDECESSORS - (RXN-7567 RXN-1403) PREDECESSORS - (RXNN-404 RXN-7567) PREDECESSORS - (4.1.1.74-RXN RXN-10139) PREDECESSORS - (TRYPTOPHAN-AMINOTRANSFERASE-RXN RXN-10139) PREDECESSORS - (AROMATIC-L-AMINO-ACID-DECARBOXYLASE-RXN RXN-10139) PREDECESSORS - (RXN-1402 RXN-10139) PREDECESSORS - (RXN-1408 RXN-1407) PREDECESSORS - (RXN-1405 AROMATIC-L-AMINO-ACID-DECARBOXYLASE-RXN) PREDECESSORS - (RXN-1403 RXN-1406) PREDECESSORS - (RXN-1406 RXN-1405) PREDECESSORS - (INDOLE-3-ACETALDEHYDE-OXIDASE-RXN 4.1.1.74-RXN) PREDECESSORS - (INDOLE-3-ACETALDEHYDE-OXIDASE-RXN RXN-1401) PREDECESSORS - (RXN-1403 RXN-1402) PREDECESSORS - (RXN-1404 RXN-1403) PREDECESSORS - (RXN-1401 AROMATIC-L-AMINO-ACID-DECARBOXYLASE-RXN) PREDECESSORS - (4.1.1.74-RXN TRYPTOPHAN-AMINOTRANSFERASE-RXN) PRIMARIES - (RXN-10139 (TRP) (INDOLE_PYRUVATE)) PRIMARIES - (RXN-1408 (INDOLE) (INDOLE_ACETATE_AUXIN)) PRIMARIES - (RXN-1407 (INDOLE-3-GLYCEROL-P) (INDOLE)) PRIMARIES - (RXN-1403 (INDOLE-3-ACETALDOXIME) (INDOLEYL-CPD)) PRIMARIES - (RXN-1406 (N-HYDROXYL-TRYPTAMINE) (INDOLE-3-ACETALDOXIME)) PRIMARIES - (RXN-1405 (TRYPTAMINE) (N-HYDROXYL-TRYPTAMINE)) PRIMARIES - (RXN-1404 (INDOLEYL-CPD) (INDOLE_ACETATE_AUXIN)) PRIMARIES - (AROMATIC-L-AMINO-ACID-DECARBOXYLASE-RXN (TRP) (TRYPTAMINE)) PRIMARIES - (RXN-1402 (TRP) (INDOLE-3-ACETALDOXIME)) PRIMARIES - (TRYPTOPHAN-AMINOTRANSFERASE-RXN (TRP) (INDOLE_PYRUVATE)) PRIMARIES - (INDOLE-3-ACETALDEHYDE-OXIDASE-RXN (INDOLE_ACETALDEHYDE) (INDOLE_ACETATE_AUXIN)) PRIMARIES - (RXN-1401 (TRYPTAMINE) (INDOLE_ACETALDEHYDE)) PRIMARIES - (4.1.1.74-RXN (INDOLE_PYRUVATE) (INDOLE_ACETALDEHYDE)) REACTION-LAYOUT - (RXN-7567 (:LEFT-PRIMARIES INDOLEYL-CPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-237)) REACTION-LAYOUT - (RXNN-404 (:LEFT-PRIMARIES CPD-237) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INDOLE_ACETATE_AUXIN)) REACTION-LAYOUT - (RXN-10139 (:LEFT-PRIMARIES TRP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INDOLE_PYRUVATE)) REACTION-LAYOUT - (RXN-1408 (:LEFT-PRIMARIES INDOLE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INDOLE_ACETATE_AUXIN)) REACTION-LAYOUT - (RXN-1407 (:LEFT-PRIMARIES INDOLE-3-GLYCEROL-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INDOLE)) REACTION-LAYOUT - (RXN-1406 (:LEFT-PRIMARIES N-HYDROXYL-TRYPTAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INDOLE-3-ACETALDOXIME)) REACTION-LAYOUT - (RXN-1405 (:LEFT-PRIMARIES TRYPTAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES N-HYDROXYL-TRYPTAMINE)) REACTION-LAYOUT - (RXN-1404 (:LEFT-PRIMARIES INDOLEYL-CPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INDOLE_ACETATE_AUXIN)) REACTION-LAYOUT - (RXN-1403 (:LEFT-PRIMARIES INDOLE-3-ACETALDOXIME) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INDOLEYL-CPD)) REACTION-LAYOUT - (RXN-1402 (:LEFT-PRIMARIES TRP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INDOLE-3-ACETALDOXIME)) REACTION-LAYOUT - (RXN-1401 (:LEFT-PRIMARIES TRYPTAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INDOLE_ACETALDEHYDE)) REACTION-LAYOUT - (AROMATIC-L-AMINO-ACID-DECARBOXYLASE-RXN (:LEFT-PRIMARIES TRP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TRYPTAMINE)) REACTION-LAYOUT - (INDOLE-3-ACETALDEHYDE-OXIDASE-RXN (:LEFT-PRIMARIES INDOLE_ACETALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INDOLE_ACETATE_AUXIN)) REACTION-LAYOUT - (4.1.1.74-RXN (:LEFT-PRIMARIES INDOLE_PYRUVATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INDOLE_ACETALDEHYDE)) REACTION-LAYOUT - (TRYPTOPHAN-AMINOTRANSFERASE-RXN (:LEFT-PRIMARIES TRP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INDOLE_PYRUVATE)) REACTION-LIST - RXN-7567 REACTION-LIST - RXNN-404 REACTION-LIST - RXN-10139 REACTION-LIST - RXN-1408 REACTION-LIST - RXN-1407 REACTION-LIST - RXN-1406 REACTION-LIST - RXN-1405 REACTION-LIST - RXN-1404 REACTION-LIST - RXN-1403 REACTION-LIST - RXN-1402 REACTION-LIST - RXN-1401 REACTION-LIST - AROMATIC-L-AMINO-ACID-DECARBOXYLASE-RXN REACTION-LIST - INDOLE-3-ACETALDEHYDE-OXIDASE-RXN REACTION-LIST - 4.1.1.74-RXN REACTION-LIST - TRYPTOPHAN-AMINOTRANSFERASE-RXN SYNONYMS - auxin biosynthesis SYNONYMS - indole-3-acetic acid biosynthesis SYNONYMS - IAA de novo synthesis // UNIQUE-ID - PWY-5034 TYPES - GIBBERELLIN-SYN COMMON-NAME - GA12 biosynthesis CITATIONS - :EV-COMP-AINF:3497824357:liya IN-PATHWAY - PWY-5053 PATHWAY-LINKS - (CPD1F-95 PWY-5035) PATHWAY-LINKS - (CPD1F-128 PWY-5032) PREDECESSORS - (RXN-7580 RXN-5242) PREDECESSORS - (RXN-5242 1.14.13.78-RXN) PREDECESSORS - (1.14.13.78-RXN) PREDECESSORS - (RXN1F-160 1.14.13.79-RXN) PREDECESSORS - (RXN1F-161 RXN1F-160) PREDECESSORS - (1.14.13.79-RXN RXN-7580) PRIMARIES - (RXN1F-161 (CPD1F-138) (CPD1F-95)) PRIMARIES - (RXN1F-160 (CPD1F-136) (CPD1F-138)) PRIMARIES - (1.14.13.79-RXN (CPD1F-132) (CPD1F-136)) PRIMARIES - (RXN-7580 (ENT-KAUR-16-EN-19-AL) (CPD1F-132)) PRIMARIES - (RXN-5242 (ENT-KAUR-16-EN-19-OL) (ENT-KAUR-16-EN-19-AL)) PRIMARIES - (1.14.13.78-RXN (CPD1F-128) (ENT-KAUR-16-EN-19-OL)) REACTION-LAYOUT - (1.14.13.79-RXN (:LEFT-PRIMARIES CPD1F-132) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-136)) REACTION-LAYOUT - (RXN1F-160 (:LEFT-PRIMARIES CPD1F-136) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-138)) REACTION-LAYOUT - (RXN1F-161 (:LEFT-PRIMARIES CPD1F-138) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-95)) REACTION-LAYOUT - (1.14.13.78-RXN (:LEFT-PRIMARIES CPD1F-128) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ENT-KAUR-16-EN-19-OL)) REACTION-LAYOUT - (RXN-5242 (:LEFT-PRIMARIES ENT-KAUR-16-EN-19-OL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ENT-KAUR-16-EN-19-AL)) REACTION-LAYOUT - (RXN-7580 (:LEFT-PRIMARIES ENT-KAUR-16-EN-19-AL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-132)) REACTION-LIST - 1.14.13.79-RXN REACTION-LIST - RXN1F-160 REACTION-LIST - RXN1F-161 REACTION-LIST - 1.14.13.78-RXN REACTION-LIST - RXN-5242 REACTION-LIST - RXN-7580 SUPER-PATHWAYS - PWY-5053 SYNONYMS - gibberellin A12 biosynthesis // UNIQUE-ID - PWY-5035 TYPES - GIBBERELLIN-SYN COMMON-NAME - gibberellin biosynthesis III (early C-13 hydroxylation) CITATIONS - :EV-COMP-AINF:3497824358:liya PATHWAY-LINKS - (CPD1F-95 PWY-5034) PREDECESSORS - (RXN1F-101 RXN1F-168) PREDECESSORS - (RXN1F-170 RXN1F-169) PREDECESSORS - (RXN1F-169 RXN1F-168) PREDECESSORS - (RXN-6524 RXN1F-167) PREDECESSORS - (RXN1F-168 RXN1F-167) PREDECESSORS - (RXN1F-167 RXN1F-143) PREDECESSORS - (RXN1F-143) PRIMARIES - (RXN-6547 (CPD-6225) (CPD-6226)) PRIMARIES - (RXN-6546 (CPD1F-86) (CPD-6225)) PRIMARIES - (RXN1F-101 (CPD1F-96) (CPD1F-86)) PRIMARIES - (RXN1F-170 (CPD1F-140) (CPD1F-139)) PRIMARIES - (RXN1F-169 (CPD1F-96) (CPD1F-140)) PRIMARIES - (RXN-6524 (CPD-638) (CPD-6203)) PRIMARIES - (RXN1F-168 (CPD-638) (CPD1F-96)) PRIMARIES - (RXN1F-167 (CPD-695) (CPD-638)) PRIMARIES - (RXN1F-143 (CPD1F-95) (CPD-695)) REACTION-LAYOUT - (RXN-6524 (:LEFT-PRIMARIES CPD-638) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6203)) REACTION-LAYOUT - (RXN1F-170 (:LEFT-PRIMARIES CPD1F-140) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-139)) REACTION-LAYOUT - (RXN1F-101 (:LEFT-PRIMARIES CPD1F-96) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-86)) REACTION-LAYOUT - (RXN1F-169 (:LEFT-PRIMARIES CPD1F-96) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-140)) REACTION-LAYOUT - (RXN1F-168 (:LEFT-PRIMARIES CPD-638) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-96)) REACTION-LAYOUT - (RXN1F-143 (:LEFT-PRIMARIES CPD1F-95) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-695)) REACTION-LAYOUT - (RXN1F-167 (:LEFT-PRIMARIES CPD-695) (:DIRECTION :L2R) (:RIGHT-PRIMARIES)) REACTION-LIST - RXN-6524 REACTION-LIST - RXN1F-170 REACTION-LIST - RXN1F-101 REACTION-LIST - RXN1F-169 REACTION-LIST - RXN1F-168 REACTION-LIST - RXN1F-143 REACTION-LIST - RXN1F-167 // UNIQUE-ID - PWY-5032 TYPES - GIBBERELLIN-SYN COMMON-NAME - ent-kaurene biosynthesis CITATIONS - :EV-COMP-AINF:3497824358:liya IN-PATHWAY - PWY-5053 PATHWAY-LINKS - (GERANYLGERANYL-PP PWY-5121) PATHWAY-LINKS - (DELTA3-ISOPENTENYL-PP NONMEVIPP-PWY) PATHWAY-LINKS - (CPD1F-128 PWY-5034) PREDECESSORS - (4.2.3.19-RXN 5.5.1.13-RXN) PRIMARIES - (FARNESYLTRANSTRANSFERASE-RXN (DELTA3-ISOPENTENYL-PP FARNESYL-PP) (GERANYLGERANYL-PP)) PRIMARIES - (4.2.3.19-RXN (ENT-COPALYL-DIPHOSPHATE) (CPD1F-128)) PRIMARIES - (5.5.1.13-RXN (GERANYLGERANYL-PP) (ENT-COPALYL-DIPHOSPHATE)) REACTION-LAYOUT - (4.2.3.19-RXN (:LEFT-PRIMARIES ENT-COPALYL-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-128)) REACTION-LAYOUT - (5.5.1.13-RXN (:LEFT-PRIMARIES GERANYLGERANYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ENT-COPALYL-DIPHOSPHATE)) REACTION-LIST - 4.2.3.19-RXN REACTION-LIST - 5.5.1.13-RXN SUPER-PATHWAYS - PWY-5053 // UNIQUE-ID - PWY-699 TYPES - Brassinosteroid-Biosynthesis COMMON-NAME - brassinosteroid biosynthesis I CITATIONS - :EV-COMP-AINF:3497824358:liya PATHWAY-LINKS - (CPD-707 PWY-2541) PREDECESSORS - (RXN-4241 RXN-776) PREDECESSORS - (RXN-719 RXN-4241) PREDECESSORS - (RXN-720 RXN-779) PREDECESSORS - (RXN-779 RXN-778) PREDECESSORS - (RXN-778 RXN-777) PREDECESSORS - (RXN-777 RXN-776) PREDECESSORS - (RXN-776 RXN-775) PREDECESSORS - (RXN-775 RXN-774) PREDECESSORS - (RXN-774 RXN-773) PREDECESSORS - (RXN-773 RXN-712) PREDECESSORS - (RXN-710 RXN-709) PREDECESSORS - (RXN-711 RXN-710) PREDECESSORS - (RXN-712 RXN-711) PREDECESSORS - (RXN-713 RXN-712) PREDECESSORS - (RXN-714 RXN-713) PREDECESSORS - (RXN-715 RXN-714) PREDECESSORS - (RXN-716 RXN-715) PREDECESSORS - (RXN-717 RXN-716) PREDECESSORS - (RXN-718 RXN-717) PREDECESSORS - (RXN-719 RXN-718) PREDECESSORS - (RXN-720 RXN-719) REACTION-LAYOUT - (RXN-4241 (:LEFT-PRIMARIES CPD-720) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-719)) REACTION-LAYOUT - (RXN-779 (:LEFT-PRIMARIES CPD-724) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-634)) REACTION-LAYOUT - (RXN-778 (:LEFT-PRIMARIES CPD-723) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-724)) REACTION-LAYOUT - (RXN-777 (:LEFT-PRIMARIES CPD-720) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-723)) REACTION-LAYOUT - (RXN-776 (:LEFT-PRIMARIES CPD-717) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-720)) REACTION-LAYOUT - (RXN-775 (:LEFT-PRIMARIES CPD-715) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-717)) REACTION-LAYOUT - (RXN-774 (:LEFT-PRIMARIES CPD-712) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-715)) REACTION-LAYOUT - (RXN-773 (:LEFT-PRIMARIES CPD-710) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-712)) REACTION-LAYOUT - (RXN-720 (:LEFT-PRIMARIES CPD-634) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-697)) REACTION-LAYOUT - (RXN-719 (:LEFT-PRIMARIES CPD-719) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-634)) REACTION-LAYOUT - (RXN-718 (:LEFT-PRIMARIES CPD-718) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-719)) REACTION-LAYOUT - (RXN-717 (:LEFT-PRIMARIES CPD-716) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-718)) REACTION-LAYOUT - (RXN-716 (:LEFT-PRIMARIES CPD-714) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-716)) REACTION-LAYOUT - (RXN-715 (:LEFT-PRIMARIES CPD-713) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-714)) REACTION-LAYOUT - (RXN-714 (:LEFT-PRIMARIES CPD-711) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-713)) REACTION-LAYOUT - (RXN-713 (:LEFT-PRIMARIES CPD-710) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-711)) REACTION-LAYOUT - (RXN-712 (:LEFT-PRIMARIES CPD-709) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-710)) REACTION-LAYOUT - (RXN-711 (:LEFT-PRIMARIES CPD-698) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-709)) REACTION-LAYOUT - (RXN-710 (:LEFT-PRIMARIES CPD-708) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-698)) REACTION-LAYOUT - (RXN-709 (:LEFT-PRIMARIES CPD-707) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-708)) REACTION-LIST - RXN-4241 REACTION-LIST - RXN-779 REACTION-LIST - RXN-778 REACTION-LIST - RXN-777 REACTION-LIST - RXN-776 REACTION-LIST - RXN-775 REACTION-LIST - RXN-774 REACTION-LIST - RXN-773 REACTION-LIST - RXN-720 REACTION-LIST - RXN-719 REACTION-LIST - RXN-718 REACTION-LIST - RXN-717 REACTION-LIST - RXN-716 REACTION-LIST - RXN-715 REACTION-LIST - RXN-714 REACTION-LIST - RXN-713 REACTION-LIST - RXN-712 REACTION-LIST - RXN-711 REACTION-LIST - RXN-710 REACTION-LIST - RXN-709 SYNONYMS - brassinosteroid biosynthesis - early and late C-6 oxidation pathways // UNIQUE-ID - PWY-2582 TYPES - Brassinosteroid-Biosynthesis COMMON-NAME - brassinosteroid biosynthesis II CITATIONS - :EV-COMP-AINF:3497824358:liya PATHWAY-LINKS - (CPD-715 PWY-699) PATHWAY-LINKS - (CPD-707 PWY-2541) PREDECESSORS - (RXN-4231 RXN-710) PREDECESSORS - (RXN-4229 RXN-4231) PREDECESSORS - (RXN-4228 RXN-4229) PREDECESSORS - (RXN-4229 RXN-4226) PREDECESSORS - (RXN-4226 RXN-4225) PREDECESSORS - (RXN-4225) PREDECESSORS - (RXN-709) PREDECESSORS - (RXN-710 RXN-709) PREDECESSORS - (RXN-711 RXN-710) PREDECESSORS - (RXN-712 RXN-711) PREDECESSORS - (RXN-773 RXN-712) PREDECESSORS - (RXN-774 RXN-4228) PREDECESSORS - (RXN-774 RXN-773) PREDECESSORS - (RXN-4228 RXN-4230) PREDECESSORS - (RXN-4230 RXN-711) REACTION-LAYOUT - (RXN-4230 (:LEFT-PRIMARIES CPD-709) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-3946)) REACTION-LAYOUT - (RXN-4231 (:LEFT-PRIMARIES CPD-698) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-3945)) REACTION-LAYOUT - (RXN-774 (:LEFT-PRIMARIES CPD-712) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-715)) REACTION-LAYOUT - (RXN-773 (:LEFT-PRIMARIES CPD-710) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-712)) REACTION-LAYOUT - (RXN-712 (:LEFT-PRIMARIES CPD-709) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-710)) REACTION-LAYOUT - (RXN-711 (:LEFT-PRIMARIES CPD-698) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-709)) REACTION-LAYOUT - (RXN-710 (:LEFT-PRIMARIES CPD-708) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-698)) REACTION-LAYOUT - (RXN-709 (:LEFT-PRIMARIES CPD-707) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-708)) REACTION-LAYOUT - (RXN-4229 (:LEFT-PRIMARIES CPD-3945) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-3946)) REACTION-LAYOUT - (RXN-4228 (:LEFT-PRIMARIES CPD-3946) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-712)) REACTION-LAYOUT - (RXN-4226 (:LEFT-PRIMARIES CPD-3943) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-3945)) REACTION-LAYOUT - (RXN-4225 (:LEFT-PRIMARIES CPD-707) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-3943)) REACTION-LIST - RXN-4230 REACTION-LIST - RXN-4231 REACTION-LIST - RXN-774 REACTION-LIST - RXN-773 REACTION-LIST - RXN-712 REACTION-LIST - RXN-711 REACTION-LIST - RXN-710 REACTION-LIST - RXN-709 REACTION-LIST - RXN-4229 REACTION-LIST - RXN-4228 REACTION-LIST - RXN-4226 REACTION-LIST - RXN-4225 SYNONYMS - brassinosteroid biosynthesis - C-22 oxidation branch // UNIQUE-ID - PWY-2681 TYPES - CYTOKININ-BIOSYNTHESIS COMMON-NAME - trans-zeatin biosynthesis CITATIONS - :EV-COMP-AINF:3497824358:liya PATHWAY-LINKS - (CPD-4211 PWY-922) PATHWAY-LINKS - (CPD-4210 PWY-2902) PREDECESSORS - (RXN-4311 RXN-4305) PREDECESSORS - (RXN-4306 RXN-4305) PREDECESSORS - (RXN-4305) PREDECESSORS - (RXN-4318 RXN-4314) PREDECESSORS - (RXN-4318 RXN-4316) PREDECESSORS - (RXN-4317 RXN-4315) PREDECESSORS - (RXN-4313 RXN-4311) PREDECESSORS - (RXN-4314 RXN-4312) PREDECESSORS - (RXN-4314 RXN-4308) PREDECESSORS - (RXN-4306 RXN-4309) PREDECESSORS - (RXN-4310 RXN-4304) PREDECESSORS - (RXN-4312 RXN-4306) PREDECESSORS - (RXN-4312 RXN-4310) PREDECESSORS - (RXN-4308 RXN-4311) PREDECESSORS - (RXN-4311 RXN-4309) PREDECESSORS - (RXN-4316 RXN-4313) PREDECESSORS - (RXN-4315 RXN-4313) PREDECESSORS - (RXN-4303) PREDECESSORS - (RXN-4304 RXN-4303) PREDECESSORS - (RXN-4309 RXN-4303) PREDECESSORS - (RXN-4307) PREDECESSORS - (RXN-4308 RXN-4307) PREDECESSORS - (RXN-4313 RXN-4307) PRIMARIES - (RXN-4304 (CPD-4201) (CPD-4202)) PRIMARIES - (RXN-4306 (CPD-4203) (CPD-4204)) PRIMARIES - (RXN-4308 (CPD-4205) (CPD-4206)) PRIMARIES - (RXN-4310 (CPD-4202) (CPD-4204)) PRIMARIES - (RXN-4311 (CPD-4203) (CPD-4205)) PRIMARIES - (RXN-4309 (CPD-4201) (CPD-4203)) PRIMARIES - (RXN-4305 (CPD-4211) (CPD-4203)) PRIMARIES - (RXN-4307 (CPD-4211) (CPD-4205)) PRIMARIES - (RXN-4303 (CPD-4211) (CPD-4201)) PRIMARIES - (RXN-4318 (CPD-4208) (CPD-4210)) PRIMARIES - (RXN-4315 (CPD-4207) (CPD-4209)) REACTION-LAYOUT - (RXN-4307 (:LEFT-PRIMARIES CPD-4211) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4205)) REACTION-LAYOUT - (RXN-4305 (:LEFT-PRIMARIES CPD-4211) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4203)) REACTION-LAYOUT - (RXN-4303 (:LEFT-PRIMARIES CPD-4211) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4201)) REACTION-LAYOUT - (RXN-4318 (:LEFT-PRIMARIES CPD-4208) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4210)) REACTION-LAYOUT - (RXN-4317 (:LEFT-PRIMARIES CPD-4209) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4210)) REACTION-LAYOUT - (RXN-4315 (:LEFT-PRIMARIES CPD-4207) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4209)) REACTION-LAYOUT - (RXN-4316 (:LEFT-PRIMARIES CPD-4207) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4208)) REACTION-LAYOUT - (RXN-4313 (:LEFT-PRIMARIES CPD-4205) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4207)) REACTION-LAYOUT - (RXN-4314 (:LEFT-PRIMARIES CPD-4206) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4208)) REACTION-LAYOUT - (RXN-4311 (:LEFT-PRIMARIES CPD-4203) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4205)) REACTION-LAYOUT - (RXN-4308 (:LEFT-PRIMARIES CPD-4205) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4206)) REACTION-LAYOUT - (RXN-4312 (:LEFT-PRIMARIES CPD-4204) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4206)) REACTION-LAYOUT - (RXN-4306 (:LEFT-PRIMARIES CPD-4203) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4204)) REACTION-LAYOUT - (RXN-4310 (:LEFT-PRIMARIES CPD-4202) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4204)) REACTION-LAYOUT - (RXN-4309 (:LEFT-PRIMARIES CPD-4201) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4203)) REACTION-LAYOUT - (RXN-4304 (:LEFT-PRIMARIES CPD-4201) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4202)) REACTION-LIST - RXN-4307 REACTION-LIST - RXN-4305 REACTION-LIST - RXN-4303 REACTION-LIST - RXN-4318 REACTION-LIST - RXN-4317 REACTION-LIST - RXN-4315 REACTION-LIST - RXN-4316 REACTION-LIST - RXN-4313 REACTION-LIST - RXN-4314 REACTION-LIST - RXN-4311 REACTION-LIST - RXN-4308 REACTION-LIST - RXN-4312 REACTION-LIST - RXN-4306 REACTION-LIST - RXN-4310 REACTION-LIST - RXN-4309 REACTION-LIST - RXN-4304 SYNONYMS - trans-cytokinin biosynthesis SYNONYMS - AMP-dependent cytokinin biosynthesis // UNIQUE-ID - PWY-2781 TYPES - CYTOKININ-BIOSYNTHESIS COMMON-NAME - cis-zeatin biosynthesis CITATIONS - :EV-COMP-AINF:3497824359:liya PATHWAY-LINKS - (CPD-4441 PWY-2902) PATHWAY-LINKS - (CPD-4211 PWY-922) PREDECESSORS - (RXN-4541 RXN-4542) PREDECESSORS - (RXN-4544 RXN-4543) PREDECESSORS - (RXN-4543) PREDECESSORS - (RXN-4545 RXN-4544) PREDECESSORS - (RXN-4542 RXN-4545) PRIMARIES - (RXN-4543 (CPD-4211) (|Prenyl-tRNAs|)) PRIMARIES - (RXN-4541 (CPD-4442) (CPD-4441)) PRIMARIES - (RXN-4542 (CPD-4443) (CPD-4442)) REACTION-LAYOUT - (RXN-4545 (:LEFT-PRIMARIES |Cis-Prenyl-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4443)) REACTION-LAYOUT - (RXN-4541 (:LEFT-PRIMARIES CPD-4442) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4441)) REACTION-LAYOUT - (RXN-4542 (:LEFT-PRIMARIES CPD-4443) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4442)) REACTION-LAYOUT - (RXN-4544 (:LEFT-PRIMARIES |Prenyl-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Cis-Prenyl-tRNAs|)) REACTION-LAYOUT - (RXN-4543 (:LEFT-PRIMARIES CPD-4211) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Prenyl-tRNAs|)) REACTION-LIST - RXN-4545 REACTION-LIST - RXN-4541 REACTION-LIST - RXN-4542 REACTION-LIST - RXN-4544 REACTION-LIST - RXN-4543 SYNONYMS - cis-cytokinins biosynthesis SYNONYMS - tRNA-dependent cytokinin biosynthesis // UNIQUE-ID - PWY-2902 TYPES - CYTOKININ-BIOSYNTHESIS TYPES - Metabolic-Clusters COMMON-NAME - cytokinins-O-glucoside biosynthesis CITATIONS - :EV-COMP-AINF:3497824358:liya PATHWAY-LINKS - (CPD-4210 PWY-2681) PATHWAY-LINKS - (CPD-4441 PWY-2781) PREDECESSORS - (RXN-4726) PRIMARIES - (RXN-4737 (CPD-4616) (CPD-4621)) PRIMARIES - (RXN-4726 (CPD-332) (CPD-4617)) PRIMARIES - (RXN-4723 (CPD-4210) (CPD-4614)) PRIMARIES - (RXN-4735 (CPD-4441) (CPD-4620)) REACTION-LAYOUT - (RXN-4737 (:LEFT-PRIMARIES CPD-4616) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4621)) REACTION-LAYOUT - (RXN-4735 (:LEFT-PRIMARIES CPD-4441) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4620)) REACTION-LAYOUT - (RXN-4726 (:LEFT-PRIMARIES CPD-332) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4617)) REACTION-LAYOUT - (RXN-4723 (:LEFT-PRIMARIES CPD-4210) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4614)) REACTION-LIST - RXN-4737 REACTION-LIST - RXN-4735 REACTION-LIST - RXN-4726 REACTION-LIST - RXN-4723 // UNIQUE-ID - ETHYL-PWY TYPES - Ethylene-Biosynthesis COMMON-NAME - ethylene biosynthesis from methionine CITATIONS - :EV-COMP-AINF:3497824356:liya PATHWAY-LINKS - (MET PWY-702) PREDECESSORS - (ETHYL-RXN 4.4.1.14-RXN) PREDECESSORS - (4.4.1.14-RXN S-ADENMETSYN-RXN) PRIMARIES - (ETHYL-RXN (CPD-68) (ETHYLENE-CMPD)) PRIMARIES - (4.4.1.14-RXN (S-ADENOSYLMETHIONINE) (CPD-68)) PRIMARIES - (S-ADENMETSYN-RXN (MET) (S-ADENOSYLMETHIONINE)) REACTION-LAYOUT - (ETHYL-RXN (:LEFT-PRIMARIES CPD-68) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ETHYLENE-CMPD)) REACTION-LAYOUT - (4.4.1.14-RXN (:LEFT-PRIMARIES S-ADENOSYLMETHIONINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-68)) REACTION-LAYOUT - (S-ADENMETSYN-RXN (:LEFT-PRIMARIES MET) (:DIRECTION :L2R) (:RIGHT-PRIMARIES S-ADENOSYLMETHIONINE)) REACTION-LIST - ETHYL-RXN REACTION-LIST - 4.4.1.14-RXN REACTION-LIST - S-ADENMETSYN-RXN SYNONYMS - ethene biosynthesis from methionine // UNIQUE-ID - ARGSPECAT-PWY TYPES - Polyamine-Biosynthesis COMMON-NAME - spermine biosynthesis CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - |caspi| CREDITS - SRI CREDITS - |hying| KEY-REACTIONS - SPERMINE-SYNTHASE-RXN PATHWAY-LINKS - (5-METHYLTHIOADENOSINE PWY-4361) PATHWAY-LINKS - (SPERMINE PWY-3981) PATHWAY-LINKS - (SPERMIDINE BSUBPOLYAMSYN-PWY) PREDECESSORS - (SPERMINE-SYNTHASE-RXN SAMDECARB-RXN) PRIMARIES - (SPERMINE-SYNTHASE-RXN (S-ADENOSYLMETHIONINAMINE SPERMIDINE) (5-METHYLTHIOADENOSINE SPERMINE)) REACTION-LAYOUT - (SAMDECARB-RXN (:LEFT-PRIMARIES S-ADENOSYLMETHIONINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES S-ADENOSYLMETHIONINAMINE)) REACTION-LAYOUT - (SPERMINE-SYNTHASE-RXN (:LEFT-PRIMARIES S-ADENOSYLMETHIONINAMINE SPERMIDINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-METHYLTHIOADENOSINE SPERMINE)) REACTION-LIST - SAMDECARB-RXN REACTION-LIST - SPERMINE-SYNTHASE-RXN // UNIQUE-ID - UDPNACETYLGALSYN-PWY TYPES - UDP-NAc-Glucosamine-Biosynthesis COMMON-NAME - UDP-N-acetyl-D-glucosamine biosynthesis II CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - |fulcher| CREDITS - SRI CREDITS - |hying| PREDECESSORS - (NAG1P-URIDYLTRANS-RXN PHOSACETYLGLUCOSAMINEMUT-RXN) PREDECESSORS - (PHOSACETYLGLUCOSAMINEMUT-RXN GLUCOSAMINEPNACETYLTRANS-RXN) PREDECESSORS - (GLUCOSAMINEPNACETYLTRANS-RXN L-GLN-FRUCT-6-P-AMINOTRANS-RXN) PREDECESSORS - (L-GLN-FRUCT-6-P-AMINOTRANS-RXN) REACTION-LAYOUT - (NAG1P-URIDYLTRANS-RXN (:LEFT-PRIMARIES N-ACETYL-D-GLUCOSAMINE-1-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP-N-ACETYL-D-GLUCOSAMINE)) REACTION-LAYOUT - (PHOSACETYLGLUCOSAMINEMUT-RXN (:LEFT-PRIMARIES N-ACETYL-D-GLUCOSAMINE-1-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES N-ACETYL-D-GLUCOSAMINE-6-P)) REACTION-LAYOUT - (GLUCOSAMINEPNACETYLTRANS-RXN (:LEFT-PRIMARIES D-GLUCOSAMINE-6-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES N-ACETYL-D-GLUCOSAMINE-6-P)) REACTION-LAYOUT - (L-GLN-FRUCT-6-P-AMINOTRANS-RXN (:LEFT-PRIMARIES FRUCTOSE-6P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES D-GLUCOSAMINE-6-P)) REACTION-LIST - NAG1P-URIDYLTRANS-RXN REACTION-LIST - PHOSACETYLGLUCOSAMINEMUT-RXN REACTION-LIST - GLUCOSAMINEPNACETYLTRANS-RXN REACTION-LIST - L-GLN-FRUCT-6-P-AMINOTRANS-RXN SYNONYMS - UDP-N-acetylgalactosamine biosynthesis // UNIQUE-ID - PWY1F-353 TYPES - Betaine-Biosynthesis COMMON-NAME - glycine betaine biosynthesis III (plants) CITATIONS - :EV-COMP-AINF:3497824356:liya PATHWAY-LINKS - (CHOLINE PWY-3385) PREDECESSORS - (BADH-RXN RXN-6268) PREDECESSORS - (RXN-6268 RXN1F-357) REACTION-LAYOUT - (RXN-6268 (:LEFT-PRIMARIES BETAINE-ALDEHYDE-HYDRATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES BETAINE_ALDEHYDE)) REACTION-LAYOUT - (BADH-RXN (:LEFT-PRIMARIES BETAINE_ALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES BETAINE)) REACTION-LAYOUT - (RXN1F-357 (:LEFT-PRIMARIES CHOLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES BETAINE-ALDEHYDE-HYDRATE)) REACTION-LIST - RXN-6268 REACTION-LIST - BADH-RXN REACTION-LIST - RXN1F-357 SYNONYMS - glycine betaine biosynthesis // UNIQUE-ID - BSUBPOLYAMSYN-PWY TYPES - Spermidine-Biosynthesis COMMON-NAME - spermidine biosynthesis CREDITS - SRI CREDITS - |caspi| CREDITS - O-18 CREDITS - |pellegrini-toole| PATHWAY-LINKS - (5-METHYLTHIOADENOSINE PWY-4361) PATHWAY-LINKS - (SPERMIDINE ARGSPECAT-PWY) PATHWAY-LINKS - (PUTRESCINE PWY-43) PREDECESSORS - (SPERMIDINESYN-RXN SAMDECARB-RXN) PRIMARIES - (SPERMIDINESYN-RXN (S-ADENOSYLMETHIONINAMINE PUTRESCINE) (5-METHYLTHIOADENOSINE SPERMIDINE)) REACTION-LAYOUT - (SAMDECARB-RXN (:LEFT-PRIMARIES S-ADENOSYLMETHIONINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES S-ADENOSYLMETHIONINAMINE)) REACTION-LAYOUT - (SPERMIDINESYN-RXN (:LEFT-PRIMARIES S-ADENOSYLMETHIONINAMINE PUTRESCINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-METHYLTHIOADENOSINE SPERMIDINE)) REACTION-LIST - SAMDECARB-RXN REACTION-LIST - SPERMIDINESYN-RXN SYNONYMS - arginine degradation to spermidine SYNONYMS - spermidine biosynthesis // UNIQUE-ID - PWY-6305 TYPES - Putrescine-Biosynthesis COMMON-NAME - putrescine biosynthesis IV CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - O-28 CREDITS - |pujar| PATHWAY-LINKS - (PUTRESCINE BSUBPOLYAMSYN-PWY) PREDECESSORS - (AGMATIN-RXN ARGDECARBOX-RXN) PREDECESSORS - (ARGINASE-RXN ARGDECARBOX-RXN) PREDECESSORS - (ARGDECARBOX-RXN) PREDECESSORS - (ORNDECARBOX-RXN ARGINASE-RXN) PRIMARIES - (ARGDECARBOX-RXN (ARG) (AGMATHINE)) PRIMARIES - (ARGINASE-RXN (ARG) (L-ORNITHINE)) PRIMARIES - (AGMATIN-RXN (AGMATHINE) (PUTRESCINE)) REACTION-LAYOUT - (ORNDECARBOX-RXN (:LEFT-PRIMARIES L-ORNITHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PUTRESCINE)) REACTION-LAYOUT - (AGMATIN-RXN (:LEFT-PRIMARIES AGMATHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PUTRESCINE)) REACTION-LAYOUT - (ARGINASE-RXN (:LEFT-PRIMARIES ARG) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-ORNITHINE)) REACTION-LAYOUT - (ARGDECARBOX-RXN (:LEFT-PRIMARIES ARG) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AGMATHINE)) REACTION-LIST - ORNDECARBOX-RXN REACTION-LIST - AGMATIN-RXN REACTION-LIST - ARGINASE-RXN REACTION-LIST - ARGDECARBOX-RXN SYNONYMS - putrescine biosynthesis in plants SYNONYMS - ODC and ADC putrescine biosynthesis // UNIQUE-ID - PWY-43 TYPES - Putrescine-Biosynthesis COMMON-NAME - putrescine biosynthesis II CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (PUTRESCINE BSUBPOLYAMSYN-PWY) PREDECESSORS - (AGMATINE-DEIMINASE-RXN ARGDECARBOX-RXN) PREDECESSORS - (N-CARBAMOYLPUTRESCINE-AMIDASE-RXN AGMATINE-DEIMINASE-RXN) REACTION-LAYOUT - (N-CARBAMOYLPUTRESCINE-AMIDASE-RXN (:LEFT-PRIMARIES CPD-597) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PUTRESCINE)) REACTION-LAYOUT - (AGMATINE-DEIMINASE-RXN (:LEFT-PRIMARIES AGMATHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-597)) REACTION-LAYOUT - (ARGDECARBOX-RXN (:LEFT-PRIMARIES ARG) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AGMATHINE)) REACTION-LIST - N-CARBAMOYLPUTRESCINE-AMIDASE-RXN REACTION-LIST - AGMATINE-DEIMINASE-RXN REACTION-LIST - ARGDECARBOX-RXN // UNIQUE-ID - PWY-5826 TYPES - SECONDARY-METABOLITE-BIOSYNTHESIS COMMON-NAME - hypoglycin biosynthesis CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |dreher| HYPOTHETICAL-REACTIONS - RXN-9189 HYPOTHETICAL-REACTIONS - THREDEHYD-RXN HYPOTHETICAL-REACTIONS - RXN-9167 HYPOTHETICAL-REACTIONS - RXN-9168 HYPOTHETICAL-REACTIONS - RXN-9169 HYPOTHETICAL-REACTIONS - RXN-9170 HYPOTHETICAL-REACTIONS - RXN-9171 HYPOTHETICAL-REACTIONS - RXN-9172 HYPOTHETICAL-REACTIONS - RXN-9173 HYPOTHETICAL-REACTIONS - RXN-9174 PREDECESSORS - (RXN-9189 RXN-9170) PREDECESSORS - (RXN-9157 RXN-9175) PREDECESSORS - (RXN-9175 RXN-9174) PREDECESSORS - (RXN-9174 RXN-9173) PREDECESSORS - (RXN-9173 RXN-9172) PREDECESSORS - (RXN-9172 RXN-9171) PREDECESSORS - (RXN-9171 RXN-9170) PREDECESSORS - (RXN-9170 RXN-9169) PREDECESSORS - (RXN-9169 RXN-9168) PREDECESSORS - (RXN-9168 RXN-9167) PREDECESSORS - (RXN-9167 THREDEHYD-RXN) PRIMARIES - (RXN-9157 (CPD-9699) (CPD-9700)) REACTION-LAYOUT - (RXN-9189 (:LEFT-PRIMARIES CPD-9735) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9757)) REACTION-LAYOUT - (RXN-9157 (:LEFT-PRIMARIES CPD-9699) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9700)) REACTION-LAYOUT - (THREDEHYD-RXN (:LEFT-PRIMARIES THR) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-OXOBUTANOATE)) REACTION-LAYOUT - (RXN-9167 (:LEFT-PRIMARIES 2-OXOBUTANOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9727)) REACTION-LAYOUT - (RXN-9168 (:LEFT-PRIMARIES CPD-9727) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OXOPENTENOATE)) REACTION-LAYOUT - (RXN-9169 (:LEFT-PRIMARIES OXOPENTENOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9734)) REACTION-LAYOUT - (RXN-9170 (:LEFT-PRIMARIES CPD-9734) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9735)) REACTION-LAYOUT - (RXN-9171 (:LEFT-PRIMARIES CPD-9735) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9736)) REACTION-LAYOUT - (RXN-9172 (:LEFT-PRIMARIES CPD-9736) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9737)) REACTION-LAYOUT - (RXN-9173 (:LEFT-PRIMARIES CPD-9737) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9738)) REACTION-LAYOUT - (RXN-9174 (:LEFT-PRIMARIES CPD-9738) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9739)) REACTION-LAYOUT - (RXN-9175 (:LEFT-PRIMARIES CPD-9739) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9699)) REACTION-LIST - RXN-9189 REACTION-LIST - RXN-9157 REACTION-LIST - THREDEHYD-RXN REACTION-LIST - RXN-9167 REACTION-LIST - RXN-9168 REACTION-LIST - RXN-9169 REACTION-LIST - RXN-9170 REACTION-LIST - RXN-9171 REACTION-LIST - RXN-9172 REACTION-LIST - RXN-9173 REACTION-LIST - RXN-9174 REACTION-LIST - RXN-9175 // UNIQUE-ID - PWY-5410 TYPES - FATTY-ACID-DERIVATIVE-SYN COMMON-NAME - 13-LOX and 13-HPL pathway CITATIONS - :EV-COMP-AINF:3497824359:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |zhang| PATHWAY-LINKS - (LINOLEIC_ACID (PWY-5995 . :INCOMING)) PREDECESSORS - (RXN-1349 HYDROHEX-RXN) PREDECESSORS - (HYDROHEX-RXN LIPOXYGENASE-RXN) PREDECESSORS - (RXN-1345 RXN-1321) PREDECESSORS - (RXN-1346 RXN-1345) PREDECESSORS - (RXN-1348 RXN-1346) PREDECESSORS - (RXN-1347 RXN-1345) PREDECESSORS - (RXN-1349 RXN-1345) PRIMARIES - (RXN-1345 (CPD-725) (CIS-3-HEXENAL 12-OXO-CIS-9-DODECENOATE)) PRIMARIES - (HYDROHEX-RXN (13-HYDROPEROXYOCTADECA-911-DIENOATE) (12-OXO-CIS-9-DODECENOATE HEXANAL)) REACTION-LAYOUT - (RXN-1349 (:LEFT-PRIMARIES 12-OXO-CIS-9-DODECENOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 12-OXO-TRANS-10-DODECENOATE)) REACTION-LAYOUT - (RXN-1348 (:LEFT-PRIMARIES TRANS-2-HEXENAL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TRANS-2-HEXENOL)) REACTION-LAYOUT - (RXN-1347 (:LEFT-PRIMARIES CIS-3-HEXENAL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CIS-3-HEXENOL)) REACTION-LAYOUT - (RXN-1346 (:LEFT-PRIMARIES CIS-3-HEXENAL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TRANS-2-HEXENAL)) REACTION-LAYOUT - (RXN-1345 (:LEFT-PRIMARIES CPD-725) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CIS-3-HEXENAL 12-OXO-CIS-9-DODECENOATE)) REACTION-LAYOUT - (RXN-1321 (:LEFT-PRIMARIES LINOLENIC_ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-725)) REACTION-LAYOUT - (HYDROHEX-RXN (:LEFT-PRIMARIES 13-HYDROPEROXYOCTADECA-911-DIENOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HEXANAL 12-OXO-CIS-9-DODECENOATE)) REACTION-LAYOUT - (LIPOXYGENASE-RXN (:LEFT-PRIMARIES LINOLEIC_ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 13-HYDROPEROXYOCTADECA-911-DIENOATE)) REACTION-LIST - RXN-1349 REACTION-LIST - RXN-1348 REACTION-LIST - RXN-1347 REACTION-LIST - RXN-1346 REACTION-LIST - RXN-1345 REACTION-LIST - RXN-1321 REACTION-LIST - HYDROHEX-RXN REACTION-LIST - LIPOXYGENASE-RXN SYNONYMS - 13-lipoxygenase and 13-hydroperoxide lyase pathway // UNIQUE-ID - PWY-5409 TYPES - Divinyl-Ether-Biosynthesis COMMON-NAME - divinyl ether biosynthesis II (13-LOX) CITATIONS - :EV-COMP-AINF:3497824359:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |zhang| PATHWAY-LINKS - (LINOLEIC_ACID PWY-5995) PREDECESSORS - (RXN-8504 LIPOXYGENASE-RXN) REACTION-LAYOUT - (LIPOXYGENASE-RXN (:LEFT-PRIMARIES LINOLEIC_ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 13-HYDROPEROXYOCTADECA-911-DIENOATE)) REACTION-LAYOUT - (RXN-8504 (:LEFT-PRIMARIES 13-HYDROPEROXYOCTADECA-911-DIENOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8690)) REACTION-LIST - LIPOXYGENASE-RXN REACTION-LIST - RXN-8504 // UNIQUE-ID - PWY-5168 TYPES - CINNAMATE-SYN COMMON-NAME - ferulate and sinapate biosynthesis CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |hartmut| PATHWAY-LINKS - (SINAPALDEHYDE (PWY-361 . :OUTGOING)) PATHWAY-LINKS - (CONIFERYL-ALDEHYDE PWY-361) PREDECESSORS - (RXN-1241) PREDECESSORS - (RXN-8014 RXN-1143) PREDECESSORS - (RXN-1142) PREDECESSORS - (RXN-1143 RXN-1142) PRIMARIES - (RXN-1143 (5-HYDROXY-CONIFERALDEHYDE) (SINAPALDEHYDE)) PRIMARIES - (RXN-1142 (CONIFERYL-ALDEHYDE) (5-HYDROXY-CONIFERALDEHYDE)) PRIMARIES - (RXN-1241 (CONIFERYL-ALDEHYDE) (FERULIC-ACID)) REACTION-LAYOUT - (RXN-8014 (:LEFT-PRIMARIES SINAPALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SINAPATE)) REACTION-LAYOUT - (RXN-1143 (:LEFT-PRIMARIES 5-HYDROXY-CONIFERALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SINAPALDEHYDE)) REACTION-LAYOUT - (RXN-1142 (:LEFT-PRIMARIES CONIFERYL-ALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-HYDROXY-CONIFERALDEHYDE)) REACTION-LAYOUT - (RXN-1241 (:LEFT-PRIMARIES CONIFERYL-ALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FERULIC-ACID)) REACTION-LIST - RXN-8014 REACTION-LIST - RXN-1143 REACTION-LIST - RXN-1142 REACTION-LIST - RXN-1241 // UNIQUE-ID - PWY-2181 TYPES - CINNAMATE-SYN COMMON-NAME - free phenylpropanoid acid biosynthesis CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |hartmut| PATHWAY-LINKS - (CAFFEATE PWY-5349) PATHWAY-LINKS - (CPD-674 PWY-361 PWY1F-467) PATHWAY-LINKS - (COUMARATE PWY1F-467 PWY1F-FLAVSYN) PREDECESSORS - (RXN-1104 RXN-1103) PREDECESSORS - (RXN-1121 RXN-1104) PREDECESSORS - (RXN-3422 RXN-1121) REACTION-LAYOUT - (RXN-3422 (:LEFT-PRIMARIES 5-HYDROXY-FERULIC-ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SINAPATE)) REACTION-LAYOUT - (RXN-1121 (:LEFT-PRIMARIES FERULIC-ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-HYDROXY-FERULIC-ACID)) REACTION-LAYOUT - (RXN-1104 (:LEFT-PRIMARIES CPD-676) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FERULIC-ACID)) REACTION-LAYOUT - (RXN-1103 (:LEFT-PRIMARIES COUMARATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-676)) REACTION-LIST - RXN-3422 REACTION-LIST - RXN-1121 REACTION-LIST - RXN-1104 REACTION-LIST - RXN-1103 // UNIQUE-ID - PWY-6040 TYPES - CINNAMATE-SYN COMMON-NAME - chlorogenic acid biosynthesis II CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - O-28 CREDITS - |pujar| PREDECESSORS - (1.14.13.36-RXN RXN-2601) PREDECESSORS - (RXN-2581 2.3.1.133-RXN) PRIMARIES - (RXN-2601 (P-COUMAROYL-COA) (4-COUMAROYLQUINATE)) PRIMARIES - (2.3.1.133-RXN (P-COUMAROYL-COA) (CPD-412)) PRIMARIES - (1.14.13.36-RXN (4-COUMAROYLQUINATE) (CAFFEOYLQUINATE)) REACTION-LAYOUT - (1.14.13.36-RXN (:LEFT-PRIMARIES 4-COUMAROYLQUINATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CAFFEOYLQUINATE)) REACTION-LAYOUT - (RXN-2601 (:LEFT-PRIMARIES P-COUMAROYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 4-COUMAROYLQUINATE)) REACTION-LAYOUT - (2.3.1.133-RXN (:LEFT-PRIMARIES P-COUMAROYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-412)) REACTION-LAYOUT - (RXN-2581 (:LEFT-PRIMARIES CPD-412) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CAFFEOYLSHIKIMATE)) REACTION-LIST - 1.14.13.36-RXN REACTION-LIST - RXN-2601 REACTION-LIST - 2.3.1.133-RXN REACTION-LIST - RXN-2581 // UNIQUE-ID - PWY-5049 TYPES - CINNAMATE-SYN COMMON-NAME - rosmarinic acid biosynthesis II CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |hartmut| PREDECESSORS - (RXN-7633 RXN-7632) PREDECESSORS - (RXN-7632 2.6.1.49-RXN) PREDECESSORS - (2.6.1.49-RXN TYROSINE-3-MONOOXYGENASE-RXN) PREDECESSORS - (TYROSINE-3-MONOOXYGENASE-RXN) PRIMARIES - (RXN-7633 (CPD-6982) (CPD-6981)) PRIMARIES - (RXN-7632 (34-DIHYDROXYPHENYLPYRUVATE) (CPD-6982)) PRIMARIES - (2.6.1.49-RXN (L-DIHYDROXY-PHENYLALANINE) (34-DIHYDROXYPHENYLPYRUVATE)) PRIMARIES - (TYROSINE-3-MONOOXYGENASE-RXN (TYR) (L-DIHYDROXY-PHENYLALANINE)) REACTION-LAYOUT - (RXN-7633 (:LEFT-PRIMARIES CPD-6982) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6981)) REACTION-LAYOUT - (RXN-7632 (:LEFT-PRIMARIES 34-DIHYDROXYPHENYLPYRUVATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6982)) REACTION-LAYOUT - (2.6.1.49-RXN (:LEFT-PRIMARIES L-DIHYDROXY-PHENYLALANINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 34-DIHYDROXYPHENYLPYRUVATE)) REACTION-LAYOUT - (TYROSINE-3-MONOOXYGENASE-RXN (:LEFT-PRIMARIES TYR) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-DIHYDROXY-PHENYLALANINE)) REACTION-LIST - RXN-7633 REACTION-LIST - RXN-7632 REACTION-LIST - 2.6.1.49-RXN REACTION-LIST - TYROSINE-3-MONOOXYGENASE-RXN // UNIQUE-ID - PWY-6039 TYPES - CINNAMATE-SYN COMMON-NAME - chlorogenic acid biosynthesis I CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - O-28 CREDITS - |pujar| PATHWAY-LINKS - (P-COUMAROYL-COA (PWY1F-467 . :INCOMING)) PREDECESSORS - (CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN RXN-2622) PREDECESSORS - (CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN RXN-2621) PREDECESSORS - (RXN-2622 1.14.13.36-RXN) PREDECESSORS - (1.14.13.36-RXN RXN-2601) PREDECESSORS - (2.3.1.133-RXN RXN-2601) PREDECESSORS - (RXN-2621 RXN-2581) PREDECESSORS - (RXN-2581 2.3.1.133-RXN) PRIMARIES - (2.3.1.133-RXN (P-COUMAROYL-COA) (CPD-412)) PRIMARIES - (RXN-2601 (P-COUMAROYL-COA) (4-COUMAROYLQUINATE)) REACTION-LAYOUT - (1.14.13.36-RXN (:LEFT-PRIMARIES 4-COUMAROYLQUINATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CAFFEOYLQUINATE)) REACTION-LAYOUT - (CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN (:LEFT-PRIMARIES CAFFEOYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FERULOYL-COA)) REACTION-LAYOUT - (RXN-2622 (:LEFT-PRIMARIES CAFFEOYLQUINATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CAFFEOYL-COA)) REACTION-LAYOUT - (RXN-2601 (:LEFT-PRIMARIES P-COUMAROYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 4-COUMAROYLQUINATE)) REACTION-LAYOUT - (RXN-2621 (:LEFT-PRIMARIES CAFFEOYLSHIKIMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CAFFEOYL-COA)) REACTION-LAYOUT - (RXN-2581 (:LEFT-PRIMARIES CPD-412) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CAFFEOYLSHIKIMATE)) REACTION-LAYOUT - (2.3.1.133-RXN (:LEFT-PRIMARIES P-COUMAROYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-412)) REACTION-LIST - 1.14.13.36-RXN REACTION-LIST - CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN REACTION-LIST - RXN-2622 REACTION-LIST - RXN-2601 REACTION-LIST - RXN-2621 REACTION-LIST - RXN-2581 REACTION-LIST - 2.3.1.133-RXN // UNIQUE-ID - PWY1F-467 TYPES - CINNAMATE-SYN COMMON-NAME - phenylpropanoid biosynthesis, initial reactions CITATIONS - :EV-COMP-AINF:3497824356:liya PATHWAY-LINKS - (CPD-674 PWY-5176) PATHWAY-LINKS - (PHE PWY-3462) PATHWAY-LINKS - (COUMARATE PWY1F-FLAVSYN PWY-361 PWY-2181) PREDECESSORS - (TRANS-CINNAMATE-4-MONOOXYGENASE-RXN PHENYLALANINE-AMMONIA-LYASE-RXN) PREDECESSORS - (PHENYLALANINE-AMMONIA-LYASE-RXN) REACTION-LAYOUT - (TRANS-CINNAMATE-4-MONOOXYGENASE-RXN (:LEFT-PRIMARIES CPD-674) (:DIRECTION :L2R) (:RIGHT-PRIMARIES COUMARATE)) REACTION-LAYOUT - (PHENYLALANINE-AMMONIA-LYASE-RXN (:LEFT-PRIMARIES PHE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-674)) REACTION-LIST - TRANS-CINNAMATE-4-MONOOXYGENASE-RXN REACTION-LIST - PHENYLALANINE-AMMONIA-LYASE-RXN // UNIQUE-ID - PWY1F-FLAVSYN TYPES - FLAVONOID-SYN TYPES - CHALCONE-SYN COMMON-NAME - flavonoid biosynthesis CITATIONS - :EV-COMP-AINF:3497824357:liya PATHWAY-LINKS - (COUMARATE PWY1F-467) PATHWAY-LINKS - (NARINGENIN-CMPD PWY-5060) PATHWAY-LINKS - (DIHYDROKAEMPFEROL-CMPD PWY-3101 PWY1F-823) PREDECESSORS - (NARINGENIN-3-DIOXYGENASE-RXN APIGNAR-RXN) PREDECESSORS - (APIGNAR-RXN NARINGENIN-CHALCONE-SYNTHASE-RXN) PREDECESSORS - (NARINGENIN-CHALCONE-SYNTHASE-RXN 4-COUMARATE--COA-LIGASE-RXN) PREDECESSORS - (4-COUMARATE--COA-LIGASE-RXN) PREDECESSORS - (RXN-3142 4-COUMARATE--COA-LIGASE-RXN) PRIMARIES - (NARINGENIN-3-DIOXYGENASE-RXN (NARINGENIN-CMPD) (DIHYDROKAEMPFEROL-CMPD)) PRIMARIES - (RXN1F-461 (CPD1F-90) (CPD1F-453)) PRIMARIES - (RXN-1541 (NARINGENIN-CMPD) (ISOFLAVONE)) PRIMARIES - (RXN1F-462 (CPD-520) (CPD1F-437)) REACTION-LAYOUT - (RXN-3142 (:LEFT-PRIMARIES P-COUMAROYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-3041)) REACTION-LAYOUT - (NARINGENIN-3-DIOXYGENASE-RXN (:LEFT-PRIMARIES NARINGENIN-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROKAEMPFEROL-CMPD)) REACTION-LAYOUT - (APIGNAR-RXN (:LEFT-PRIMARIES APIGENIN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NARINGENIN-CMPD)) REACTION-LAYOUT - (NARINGENIN-CHALCONE-SYNTHASE-RXN (:LEFT-PRIMARIES P-COUMAROYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES APIGENIN)) REACTION-LAYOUT - (4-COUMARATE--COA-LIGASE-RXN (:LEFT-PRIMARIES COUMARATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES P-COUMAROYL-COA)) REACTION-LIST - RXN-3142 REACTION-LIST - NARINGENIN-3-DIOXYGENASE-RXN REACTION-LIST - APIGNAR-RXN REACTION-LIST - NARINGENIN-CHALCONE-SYNTHASE-RXN REACTION-LIST - 4-COUMARATE--COA-LIGASE-RXN SYNONYMS - flavonoid biosynthesis // UNIQUE-ID - PWY-6029 TYPES - FLAVONOID-SYN COMMON-NAME - 2,3-trans-flavanols biosynthesis CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |karthik| PATHWAY-LINKS - (CPD-7088 PWY-5153 PWY-5152) PATHWAY-LINKS - (CPD-590 PWY-5125 PWY1F-823) PATHWAY-LINKS - (LEUCOPELARGONIDIN-CMPD PWY-5125 PWY1F-823) PREDECESSORS - (RXN-1484) PREDECESSORS - (RXN-9720) PREDECESSORS - (RXN-1481) PRIMARIES - (RXN-9720 (CPD-7088) (CPD-10358)) PRIMARIES - (RXN-1481 (LEUCOPELARGONIDIN-CMPD) (CPD-1962)) PRIMARIES - (RXN-1484 (CPD-590) (CPD-1961)) REACTION-LAYOUT - (RXN-1481 (:LEFT-PRIMARIES CPD-1962) (:DIRECTION :R2L) (:RIGHT-PRIMARIES LEUCOPELARGONIDIN-CMPD)) REACTION-LAYOUT - (RXN-1484 (:LEFT-PRIMARIES CPD-1961) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CPD-590)) REACTION-LAYOUT - (RXN-9720 (:LEFT-PRIMARIES CPD-10358) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CPD-7088)) REACTION-LIST - RXN-1481 REACTION-LIST - RXN-1484 REACTION-LIST - RXN-9720 SYNONYMS - flavan-3-ols biosynthesis // UNIQUE-ID - PWY-5125 TYPES - ANTHOCYANIN-SYN COMMON-NAME - anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside) CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |hartmut| PATHWAY-LINKS - (PELARGONIDIN-3-GLUCOSIDE-CMPD PWY-5139) PATHWAY-LINKS - (CPD-7088 PWY1F-823) PATHWAY-LINKS - (LEUCOPELARGONIDIN-CMPD PWY1F-823) PATHWAY-LINKS - (CPD-590 PWY1F-823) PREDECESSORS - (1.14.11.19-RXN) PREDECESSORS - (RXN1F-775 RXN-602) PREDECESSORS - (RXN-602) PREDECESSORS - (PELUDP-RXN LEUCPEL-RXN) PREDECESSORS - (LEUCPEL-RXN) PRIMARIES - (1.14.11.19-RXN (CPD-590) (|Dihydroquercetins| "cis- and trans-dihydroquercetins")) PRIMARIES - (RXN-7815 (CPD-7090) (CPD-7117)) PRIMARIES - (RXN-7785 (CPD-7088) (CPD-7090)) PRIMARIES - (RXN1F-775 (CPD-591) (CPD1F-766)) PRIMARIES - (RXN-602 (CPD-590) (CPD-591)) PRIMARIES - (PELUDP-RXN (PELARGONIDIN-CMPD) (PELARGONIDIN-3-GLUCOSIDE-CMPD)) PRIMARIES - (LEUCPEL-RXN (LEUCOPELARGONIDIN-CMPD) (PELARGONIDIN-CMPD)) REACTION-LAYOUT - (1.14.11.19-RXN (:LEFT-PRIMARIES CPD-590) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Dihydroquercetins|)) REACTION-LAYOUT - (RXN1F-775 (:LEFT-PRIMARIES CPD-591) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-766)) REACTION-LAYOUT - (RXN-602 (:LEFT-PRIMARIES CPD-590) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-591)) REACTION-LAYOUT - (PELUDP-RXN (:LEFT-PRIMARIES PELARGONIDIN-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PELARGONIDIN-3-GLUCOSIDE-CMPD)) REACTION-LAYOUT - (LEUCPEL-RXN (:LEFT-PRIMARIES LEUCOPELARGONIDIN-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PELARGONIDIN-CMPD)) REACTION-LIST - 1.14.11.19-RXN REACTION-LIST - RXN1F-775 REACTION-LIST - RXN-602 REACTION-LIST - PELUDP-RXN REACTION-LIST - LEUCPEL-RXN // UNIQUE-ID - PWY-5139 TYPES - ANTHOCYANIN-SYN COMMON-NAME - pelargonidin conjugates biosynthesis CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |hartmut| PATHWAY-LINKS - (PELARGONIDIN-3-GLUCOSIDE-CMPD PWY-5125) PREDECESSORS - (RXN-7998) PREDECESSORS - (RXN-7997) PREDECESSORS - (RXN-7834) PREDECESSORS - (RXN-7828) PREDECESSORS - (RXN-7832 RXN-7830) PREDECESSORS - (RXN-7830) PRIMARIES - (RXN-7997 (PELARGONIDIN-3-GLUCOSIDE-CMPD) (CPD-7383)) PRIMARIES - (RXN-7998 (PELARGONIDIN-3-GLUCOSIDE-CMPD) (CPD-7384)) PRIMARIES - (RXN-7843 (CPD-7137) (CPD-7151)) PRIMARIES - (RXN-7842 (CPD-7137) (CPD-7150)) PRIMARIES - (RXN-7832 (CPD-7144) (CPD-7148)) PRIMARIES - (RXN-7828 (PELARGONIDIN-3-GLUCOSIDE-CMPD) (CPD-7137)) PRIMARIES - (RXN-7834 (PELARGONIDIN-3-GLUCOSIDE-CMPD) (CPD-7149)) PRIMARIES - (RXN-7830 (PELARGONIDIN-3-GLUCOSIDE-CMPD) (CPD-7144)) REACTION-LAYOUT - (RXN-7998 (:LEFT-PRIMARIES PELARGONIDIN-3-GLUCOSIDE-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7384)) REACTION-LAYOUT - (RXN-7997 (:LEFT-PRIMARIES PELARGONIDIN-3-GLUCOSIDE-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7383)) REACTION-LAYOUT - (RXN-7832 (:LEFT-PRIMARIES CPD-7144) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7148)) REACTION-LAYOUT - (RXN-7834 (:LEFT-PRIMARIES PELARGONIDIN-3-GLUCOSIDE-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7149)) REACTION-LAYOUT - (RXN-7830 (:LEFT-PRIMARIES PELARGONIDIN-3-GLUCOSIDE-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7144)) REACTION-LAYOUT - (RXN-7828 (:LEFT-PRIMARIES PELARGONIDIN-3-GLUCOSIDE-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7137)) REACTION-LIST - RXN-7998 REACTION-LIST - RXN-7997 REACTION-LIST - RXN-7832 REACTION-LIST - RXN-7834 REACTION-LIST - RXN-7830 REACTION-LIST - RXN-7828 // UNIQUE-ID - PWY-5295 TYPES - ANTHOCYANIN-SYN COMMON-NAME - ternatin C5 biosynthesis CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - SRI CREDITS - |caspi| CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |hartmut| PATHWAY-LINKS - (CPD-7117 PWY-5153) PREDECESSORS - (RXN-8209 RXN-8208) PREDECESSORS - (RXN-8208 RXN-8206) PREDECESSORS - (RXN-8206) PRIMARIES - (RXN-8209 (CPD-7870) (CPD-7864)) PRIMARIES - (RXN-8208 (CPD-7862) (CPD-7870)) PRIMARIES - (RXN-8206 (CPD-7117) (CPD-7862)) REACTION-LAYOUT - (RXN-8209 (:LEFT-PRIMARIES CPD-7870) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7864)) REACTION-LAYOUT - (RXN-8208 (:LEFT-PRIMARIES CPD-7862) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7870)) REACTION-LAYOUT - (RXN-8206 (:LEFT-PRIMARIES CPD-7117) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7862)) REACTION-LIST - RXN-8209 REACTION-LIST - RXN-8208 REACTION-LIST - RXN-8206 // UNIQUE-ID - PWY-5153 TYPES - ANTHOCYANIN-SYN COMMON-NAME - anthocyanin biosynthesis (delphinidin 3-O-glucoside) CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |hartmut| PATHWAY-LINKS - (CPD-7117 PWY-5295) PATHWAY-LINKS - (CPD-7088 PWY-5152) PREDECESSORS - (RXN-7785) PREDECESSORS - (RXN-7815 RXN-7785) PRIMARIES - (RXN-7815 (CPD-7090) (CPD-7117)) PRIMARIES - (RXN-7785 (CPD-7088) (CPD-7090)) REACTION-LAYOUT - (RXN-7785 (:LEFT-PRIMARIES CPD-7088) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7090)) REACTION-LAYOUT - (RXN-7815 (:LEFT-PRIMARIES CPD-7090) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7117)) REACTION-LIST - RXN-7785 REACTION-LIST - RXN-7815 // UNIQUE-ID - PWY1F-823 TYPES - LEUCOANTHOCYANIDIN-SYN COMMON-NAME - leucopelargonidin and leucocyanidin biosynthesis CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |hartmut| PATHWAY-LINKS - (CPD-7088 PWY-5125) PATHWAY-LINKS - (CPD-590 PWY-5125) PATHWAY-LINKS - (LEUCOPELARGONIDIN-CMPD PWY-5125) PATHWAY-LINKS - (DIHYDROKAEMPFEROL-CMPD PWY-5152 PWY1F-FLAVSYN) PATHWAY-LINKS - (CPD-6994 PWY-5152 PWY-5060) PATHWAY-LINKS - (NARINGENIN-CMPD PWY1F-FLAVSYN) PREDECESSORS - (DIHYDROKAEMPFEROL-4-REDUCTASE-RXN) PREDECESSORS - (RXN-600 RXN-525) PREDECESSORS - (RXN-600 RXN-7775) PRIMARIES - (RXN-525 (DIHYDROKAEMPFEROL-CMPD) (CPD-474)) PRIMARIES - (RXN-7782 (DIHYDROKAEMPFEROL-CMPD) (CPD-7087)) PRIMARIES - (DIHYDROKAEMPFEROL-4-REDUCTASE-RXN (DIHYDROKAEMPFEROL-CMPD) (LEUCOPELARGONIDIN-CMPD)) PRIMARIES - (RXN-7784 (CPD-7087) (CPD-7088)) PRIMARIES - (RXN-7783 (CPD-474) (CPD-7087)) PRIMARIES - (LEUCPEL-RXN (LEUCOPELARGONIDIN-CMPD) (PELARGONIDIN-CMPD)) PRIMARIES - (RXN-7775 (CPD-6994) (CPD-474)) PRIMARIES - (NARINGENIN-3-DIOXYGENASE-RXN (NARINGENIN-CMPD) (DIHYDROKAEMPFEROL-CMPD)) PRIMARIES - (RXN1F-775 (CPD-591) (CPD1F-766)) PRIMARIES - (PELUDP-RXN (PELARGONIDIN-CMPD) (PELARGONIDIN-3-GLUCOSIDE-CMPD)) REACTION-LAYOUT - (RXN-7775 (:LEFT-PRIMARIES CPD-6994) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-474)) REACTION-LAYOUT - (RXN-525 (:LEFT-PRIMARIES DIHYDROKAEMPFEROL-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-474)) REACTION-LAYOUT - (DIHYDROKAEMPFEROL-4-REDUCTASE-RXN (:LEFT-PRIMARIES DIHYDROKAEMPFEROL-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES LEUCOPELARGONIDIN-CMPD)) REACTION-LAYOUT - (RXN-600 (:LEFT-PRIMARIES CPD-474) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-590)) REACTION-LIST - RXN-7775 REACTION-LIST - RXN-525 REACTION-LIST - DIHYDROKAEMPFEROL-4-REDUCTASE-RXN REACTION-LIST - RXN-600 // UNIQUE-ID - PWY-5152 TYPES - LEUCOANTHOCYANIDIN-SYN COMMON-NAME - leucodelphinidin biosynthesis CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |hartmut| PATHWAY-LINKS - (CPD-7088 PWY-5153) PATHWAY-LINKS - (DIHYDROKAEMPFEROL-CMPD PWY1F-FLAVSYN PWY1F-823) PATHWAY-LINKS - (CPD-6994 PWY-5060 PWY1F-823) PREDECESSORS - (RXN-7921) PREDECESSORS - (RXN-7775) PREDECESSORS - (RXN-7922 RXN-7921) PREDECESSORS - (RXN-7784 RXN-7922) PREDECESSORS - (RXN-7784 RXN-7782) PRIMARIES - (RXN-7782 (DIHYDROKAEMPFEROL-CMPD) (CPD-7087)) PRIMARIES - (RXN-525 (DIHYDROKAEMPFEROL-CMPD) (CPD-474)) PRIMARIES - (RXN-7784 (CPD-7087) (CPD-7088)) PRIMARIES - (RXN-7922 (CPD-7214) (CPD-7087)) PRIMARIES - (RXN-7921 (CPD-6994) (CPD-7214)) PRIMARIES - (RXN-7775 (CPD-6994) (CPD-474)) REACTION-LAYOUT - (RXN-7782 (:LEFT-PRIMARIES DIHYDROKAEMPFEROL-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7087)) REACTION-LAYOUT - (RXN-525 (:LEFT-PRIMARIES DIHYDROKAEMPFEROL-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-474)) REACTION-LAYOUT - (RXN-7784 (:LEFT-PRIMARIES CPD-7087) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7088)) REACTION-LAYOUT - (RXN-7922 (:LEFT-PRIMARIES CPD-7214) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7087)) REACTION-LAYOUT - (RXN-7775 (:LEFT-PRIMARIES CPD-6994) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-474)) REACTION-LAYOUT - (RXN-7921 (:LEFT-PRIMARIES CPD-6994) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7214)) REACTION-LIST - RXN-7782 REACTION-LIST - RXN-525 REACTION-LIST - RXN-7784 REACTION-LIST - RXN-7922 REACTION-LIST - RXN-7775 REACTION-LIST - RXN-7921 // UNIQUE-ID - PWY-6199 TYPES - FLAVONOL-SYN COMMON-NAME - quercetinsulphates biosynthesis CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |karthik| PATHWAY-LINKS - (CPD-520 PWY-6064 PWY-3101) PREDECESSORS - (RXN-10244 RXN-10138) PREDECESSORS - (RXN-10138 RXN-8262) PREDECESSORS - (RXN-8262) PREDECESSORS - (RXN-10132 2.8.2.28-RXN) PREDECESSORS - (RXN-10131 RXN-10130) PREDECESSORS - (RXN-10130 2.8.2.27-RXN) PREDECESSORS - (2.8.2.28-RXN 2.8.2.26-RXN) PREDECESSORS - (2.8.2.27-RXN FLAVONOL-3-SULFOTRANSFERASE-RXN) PREDECESSORS - (2.8.2.26-RXN FLAVONOL-3-SULFOTRANSFERASE-RXN) PREDECESSORS - (FLAVONOL-3-SULFOTRANSFERASE-RXN) PRIMARIES - (RXN-10244 (CPD-10900) (CPD-11018)) PRIMARIES - (RXN-10138 (CPD-8004) (CPD-10900)) PRIMARIES - (RXN-10132 (QUERCETIN-337-TRISSULFATE) (CPD-10894)) PRIMARIES - (RXN-10131 (CPD-10893) (CPD-10894)) PRIMARIES - (RXN-10130 (QUERCETIN-34-BISSULFATE) (CPD-10893)) PRIMARIES - (2.8.2.28-RXN (QUERCETIN-33-BISSULFATE) (QUERCETIN-337-TRISSULFATE)) PRIMARIES - (2.8.2.26-RXN (CPD-1822) (QUERCETIN-33-BISSULFATE)) PRIMARIES - (2.8.2.27-RXN (CPD-1822) (QUERCETIN-34-BISSULFATE)) PRIMARIES - (FLAVONOL-3-SULFOTRANSFERASE-RXN (CPD-520) (CPD-1822)) REACTION-LAYOUT - (RXN-10244 (:LEFT-PRIMARIES CPD-10900) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-11018)) REACTION-LAYOUT - (RXN-8262 (:LEFT-PRIMARIES CPD-520) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8004)) REACTION-LAYOUT - (RXN-10138 (:LEFT-PRIMARIES CPD-8004) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-10900)) REACTION-LAYOUT - (RXN-10132 (:LEFT-PRIMARIES QUERCETIN-337-TRISSULFATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-10894)) REACTION-LAYOUT - (RXN-10131 (:LEFT-PRIMARIES CPD-10893) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-10894)) REACTION-LAYOUT - (RXN-10130 (:LEFT-PRIMARIES QUERCETIN-34-BISSULFATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-10893)) REACTION-LAYOUT - (2.8.2.28-RXN (:LEFT-PRIMARIES QUERCETIN-33-BISSULFATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES QUERCETIN-337-TRISSULFATE)) REACTION-LAYOUT - (2.8.2.27-RXN (:LEFT-PRIMARIES CPD-1822) (:DIRECTION :L2R) (:RIGHT-PRIMARIES QUERCETIN-34-BISSULFATE)) REACTION-LAYOUT - (2.8.2.26-RXN (:LEFT-PRIMARIES CPD-1822) (:DIRECTION :L2R) (:RIGHT-PRIMARIES QUERCETIN-33-BISSULFATE)) REACTION-LAYOUT - (FLAVONOL-3-SULFOTRANSFERASE-RXN (:LEFT-PRIMARIES CPD-520) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-1822)) REACTION-LIST - RXN-10244 REACTION-LIST - RXN-8262 REACTION-LIST - RXN-10138 REACTION-LIST - RXN-10132 REACTION-LIST - RXN-10131 REACTION-LIST - RXN-10130 REACTION-LIST - 2.8.2.28-RXN REACTION-LIST - 2.8.2.27-RXN REACTION-LIST - 2.8.2.26-RXN REACTION-LIST - FLAVONOL-3-SULFOTRANSFERASE-RXN // UNIQUE-ID - PWY-6035 TYPES - FLAVONOL-SYN COMMON-NAME - 2,3-cis-flavanols biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |karthik| PATHWAY-LINKS - (PELARGONIDIN-CMPD PWY-5125) PATHWAY-LINKS - (CPD-591 PWY-5125) PATHWAY-LINKS - (CPD-7090 PWY-5153) REACTION-LAYOUT - (RXN-9723 (:LEFT-PRIMARIES CPD-7090) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-10411)) REACTION-LAYOUT - (RXN-9724 (:LEFT-PRIMARIES PELARGONIDIN-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-10413)) REACTION-LAYOUT - (RXN-9725 (:LEFT-PRIMARIES CPD-591) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7630)) REACTION-LIST - RXN-9723 REACTION-LIST - RXN-9724 REACTION-LIST - RXN-9725 SYNONYMS - 2,3-cis-flavan-3-ols biosynthesis // UNIQUE-ID - PWY-6064 TYPES - FLAVONOL-SYN COMMON-NAME - methylquercetin biosynthesis CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |karthik| PATHWAY-LINKS - (CPD-8004 PWY-6199) PATHWAY-LINKS - (CPD-520 PWY-3101) PREDECESSORS - (RXN-8262) PREDECESSORS - (RXN-9817 RXN-9815) PREDECESSORS - (RXN-9815) PREDECESSORS - (2.1.1.83-RXN 2.1.1.82-RXN) PREDECESSORS - (2.1.1.82-RXN QUERCETIN-3-O-METHYLTRANSFERASE-RXN) PREDECESSORS - (QUERCETIN-3-O-METHYLTRANSFERASE-RXN) REACTION-LAYOUT - (RXN-9817 (:LEFT-PRIMARIES CPD-10520) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-10529)) REACTION-LAYOUT - (RXN-9815 (:LEFT-PRIMARIES CPD-10527) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-10520)) REACTION-LAYOUT - (RXN-8262 (:LEFT-PRIMARIES CPD-520) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8004)) REACTION-LAYOUT - (2.1.1.83-RXN (:LEFT-PRIMARIES 345-TRIHYDROXY-37-DIMETHOXYFLAVONE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-10510)) REACTION-LAYOUT - (2.1.1.82-RXN (:LEFT-PRIMARIES 3457-TETRAHYDROXY-3-METHOXYFLAVONE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 345-TRIHYDROXY-37-DIMETHOXYFLAVONE)) REACTION-LAYOUT - (QUERCETIN-3-O-METHYLTRANSFERASE-RXN (:LEFT-PRIMARIES CPD-520) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3457-TETRAHYDROXY-3-METHOXYFLAVONE)) REACTION-LIST - RXN-9817 REACTION-LIST - RXN-9815 REACTION-LIST - RXN-8262 REACTION-LIST - 2.1.1.83-RXN REACTION-LIST - 2.1.1.82-RXN REACTION-LIST - QUERCETIN-3-O-METHYLTRANSFERASE-RXN // UNIQUE-ID - PWY-3101 TYPES - FLAVONOL-SYN COMMON-NAME - flavonol biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |hartmut| PATHWAY-LINKS - (CPD-520 PWY-6064 PWY-6199) PATHWAY-LINKS - (DIHYDROKAEMPFEROL-CMPD PWY-5391 PWY1F-FLAVSYN) PREDECESSORS - (RXN1F-93) PREDECESSORS - (RXN-527 RXN-525) PRIMARIES - (RXN-8262 (CPD-520) (CPD-8004)) PRIMARIES - (RXN1F-475 (CPD1F-461) (CPD1F-462)) PRIMARIES - (RXN1F-474 (CPD1F-90) (CPD1F-461)) PRIMARIES - (RXN1F-93 (DIHYDROKAEMPFEROL-CMPD) (CPD1F-90)) PRIMARIES - (RXN1F-461 (CPD1F-90) (CPD1F-453)) PRIMARIES - (RXN1F-444 (CPD1F-420) (CPD1F-431)) PRIMARIES - (RXN1F-443 (CPD1F-453) (CPD1F-420)) PRIMARIES - (RXN1F-462 (CPD-520) (CPD1F-437)) PRIMARIES - (RXN-527 (CPD-474) (CPD-520)) PRIMARIES - (RXN-525 (DIHYDROKAEMPFEROL-CMPD) (CPD-474)) PRIMARIES - (NARINGENIN-3-DIOXYGENASE-RXN (NARINGENIN-CMPD) (DIHYDROKAEMPFEROL-CMPD)) REACTION-LAYOUT - (RXN1F-93 (:LEFT-PRIMARIES DIHYDROKAEMPFEROL-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-90)) REACTION-LAYOUT - (RXN-527 (:LEFT-PRIMARIES CPD-474) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-520)) REACTION-LAYOUT - (RXN-525 (:LEFT-PRIMARIES DIHYDROKAEMPFEROL-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-474)) REACTION-LIST - RXN1F-93 REACTION-LIST - RXN-527 REACTION-LIST - RXN-525 // UNIQUE-ID - PWY-5391 TYPES - FLAVONOL-SYN COMMON-NAME - syringetin biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |hartmut| PATHWAY-LINKS - (DIHYDROKAEMPFEROL-CMPD (PWY-3101 . :INCOMING)) PREDECESSORS - (RXN-7782) PREDECESSORS - (RXN-8450 RXN-7782) PREDECESSORS - (RXN-8451 RXN-8450) PREDECESSORS - (RXN-8452 RXN-8451) PRIMARIES - (RXN-8452 (CPD-8605) (SYRINGETIN)) PRIMARIES - (RXN-8451 (MYRICETIN) (CPD-8605)) PRIMARIES - (RXN-8450 (CPD-7087) (MYRICETIN)) PRIMARIES - (RXN-525 (DIHYDROKAEMPFEROL-CMPD) (CPD-474)) PRIMARIES - (RXN-7782 (DIHYDROKAEMPFEROL-CMPD) (CPD-7087)) REACTION-LAYOUT - (RXN-8452 (:LEFT-PRIMARIES CPD-8605) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SYRINGETIN)) REACTION-LAYOUT - (RXN-8451 (:LEFT-PRIMARIES MYRICETIN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8605)) REACTION-LAYOUT - (RXN-8450 (:LEFT-PRIMARIES CPD-7087) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MYRICETIN)) REACTION-LAYOUT - (RXN-7782 (:LEFT-PRIMARIES DIHYDROKAEMPFEROL-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7087)) REACTION-LIST - RXN-8452 REACTION-LIST - RXN-8451 REACTION-LIST - RXN-8450 REACTION-LIST - RXN-7782 // UNIQUE-ID - PWY-5060 TYPES - FLAVONE-SYN COMMON-NAME - luteolin biosynthesis CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |hartmut| PATHWAY-LINKS - (CPD-6994 PWY1F-823) PATHWAY-LINKS - (NARINGENIN-CMPD PWY1F-FLAVSYN) PREDECESSORS - (RXN-7651 RXN-7686) PREDECESSORS - (RXN-7653 RXN-7652) PREDECESSORS - (RXN-7686) PREDECESSORS - (RXN-7651 RXN-7650) PREDECESSORS - (RXN-7650) PREDECESSORS - (RXN-7687 RXN-7652) PRIMARIES - (RXN-7687 (CPD-6994) (5734-TETRAHYDROXYFLAVONE)) PRIMARIES - (RXN-7686 (NARINGENIN-CMPD) (CPD-431)) PRIMARIES - (RXN-7653 (CPD-6994) (5734-TETRAHYDROXYFLAVONE)) PRIMARIES - (RXN-7652 (NARINGENIN-CMPD) (CPD-6994)) PRIMARIES - (RXN-7651 (CPD-431) (5734-TETRAHYDROXYFLAVONE)) PRIMARIES - (RXN-7650 (NARINGENIN-CMPD) (CPD-431)) REACTION-LAYOUT - (RXN-7687 (:LEFT-PRIMARIES CPD-6994) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5734-TETRAHYDROXYFLAVONE)) REACTION-LAYOUT - (RXN-7686 (:LEFT-PRIMARIES NARINGENIN-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-431)) REACTION-LAYOUT - (RXN-7653 (:LEFT-PRIMARIES CPD-6994) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5734-TETRAHYDROXYFLAVONE)) REACTION-LAYOUT - (RXN-7652 (:LEFT-PRIMARIES NARINGENIN-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6994)) REACTION-LAYOUT - (RXN-7651 (:LEFT-PRIMARIES CPD-431) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5734-TETRAHYDROXYFLAVONE)) REACTION-LAYOUT - (RXN-7650 (:LEFT-PRIMARIES NARINGENIN-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-431)) REACTION-LIST - RXN-7687 REACTION-LIST - RXN-7686 REACTION-LIST - RXN-7653 REACTION-LIST - RXN-7652 REACTION-LIST - RXN-7651 REACTION-LIST - RXN-7650 // UNIQUE-ID - PWY-5176 TYPES - COUMARIN-SYN COMMON-NAME - coumarin biosynthesis (via 2-coumarate) CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |hartmut| PATHWAY-LINKS - (CPD-674 PWY1F-467) PREDECESSORS - (TRANS-CINNAMATE-2-MONOOXYGENASE-RXN) PREDECESSORS - (2.4.1.114-RXN TRANS-CINNAMATE-2-MONOOXYGENASE-RXN) PREDECESSORS - (RXN-8035 2.4.1.114-RXN) PREDECESSORS - (RXN-8036 RXN-8035) PREDECESSORS - (RXN-8037 RXN-8036) PRIMARIES - (2.4.1.114-RXN (2-COUMARATE) (CPD-459)) PRIMARIES - (TRANS-CINNAMATE-2-MONOOXYGENASE-RXN (CPD-674) (2-COUMARATE)) REACTION-LAYOUT - (RXN-8037 (:LEFT-PRIMARIES CPD-7418) (:DIRECTION :L2R) (:RIGHT-PRIMARIES COUMARIN)) REACTION-LAYOUT - (RXN-8036 (:LEFT-PRIMARIES CPD-7417) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7418)) REACTION-LAYOUT - (RXN-8035 (:LEFT-PRIMARIES CPD-459) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7417)) REACTION-LAYOUT - (2.4.1.114-RXN (:LEFT-PRIMARIES 2-COUMARATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-459)) REACTION-LAYOUT - (TRANS-CINNAMATE-2-MONOOXYGENASE-RXN (:LEFT-PRIMARIES CPD-674) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-COUMARATE)) REACTION-LIST - RXN-8037 REACTION-LIST - RXN-8036 REACTION-LIST - RXN-8035 REACTION-LIST - 2.4.1.114-RXN REACTION-LIST - TRANS-CINNAMATE-2-MONOOXYGENASE-RXN // UNIQUE-ID - PWY-5365 TYPES - COUMARIN-SYN COMMON-NAME - linear furanocoumarin biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |walk| PREDECESSORS - (2.1.1.69-RXN RXN-8387) PREDECESSORS - (RXN-8387 RXN-8386) PREDECESSORS - (RXN-8386 RXN-8383) PREDECESSORS - (RXN-8383 RXN-8382) PREDECESSORS - (RXN-8382 2.1.1.69-RXN) PRIMARIES - (RXN-8382 (CPD-8186) (CPD-8192)) PRIMARIES - (2.1.1.69-RXN (BERGAPTOL) (5-METHOXYFURANOCOUMARIN)) REACTION-LAYOUT - (2.1.1.69-RXN (:LEFT-PRIMARIES BERGAPTOL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-METHOXYFURANOCOUMARIN)) REACTION-LAYOUT - (RXN-8387 (:LEFT-PRIMARIES PHYTOALEXIN-CMPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES BERGAPTOL)) REACTION-LAYOUT - (RXN-8386 (:LEFT-PRIMARIES CPD-8191) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHYTOALEXIN-CMPD)) REACTION-LAYOUT - (RXN-8383 (:LEFT-PRIMARIES CPD-8192) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8191)) REACTION-LAYOUT - (RXN-8382 (:LEFT-PRIMARIES CPD-8186) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8192)) REACTION-LIST - 2.1.1.69-RXN REACTION-LIST - RXN-8387 REACTION-LIST - RXN-8386 REACTION-LIST - RXN-8383 REACTION-LIST - RXN-8382 // UNIQUE-ID - PWY-5868 TYPES - COUMARIN-SYN COMMON-NAME - simple coumarins biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |karthik| HYPOTHETICAL-REACTIONS - RXN-9289 HYPOTHETICAL-REACTIONS - RXN-9271 HYPOTHETICAL-REACTIONS - RXN-9272 HYPOTHETICAL-REACTIONS - RXN-9273 HYPOTHETICAL-REACTIONS - RXN-9274 HYPOTHETICAL-REACTIONS - RXN-9268 HYPOTHETICAL-REACTIONS - RXN-9267 HYPOTHETICAL-REACTIONS - RXN-9265 HYPOTHETICAL-REACTIONS - RXN-9264 HYPOTHETICAL-REACTIONS - RXN-9261 HYPOTHETICAL-REACTIONS - RXN-9260 PREDECESSORS - (RXN-9272 RXN-9263) PREDECESSORS - (RXN-9272 RXN-9270) PREDECESSORS - (RXN-9271 RXN-9265) PREDECESSORS - (RXN-9274 RXN-9289) PREDECESSORS - (RXN-9289 RXN-9268) PREDECESSORS - (RXN-9274 RXN-9265) PREDECESSORS - (RXN-9273 RXN-9270) PREDECESSORS - (RXN-9273 RXN-9263) PREDECESSORS - (RXN-9270 RXN-9269) PREDECESSORS - (RXN-1104 RXN-9266) PREDECESSORS - (RXN-9269 RXN-1104) PREDECESSORS - (RXN-9263 RXN-9268) PREDECESSORS - (RXN-9268 RXN-9267) PREDECESSORS - (RXN-9267 RXN-9266) PREDECESSORS - (RXN-9266 RXN-2581) PREDECESSORS - (RXN-2581 2.3.1.133-RXN) PREDECESSORS - (2.3.1.133-RXN 4-COUMARATE--COA-LIGASE-RXN) PREDECESSORS - (4-COUMARATE--COA-LIGASE-RXN) PREDECESSORS - (RXN-9260) PREDECESSORS - (RXN-9265 RXN-9264) PREDECESSORS - (RXN-9263 RXN-9262) PREDECESSORS - (RXN-9264 RXN-9261) PREDECESSORS - (RXN-9262 RXN-9261) PREDECESSORS - (RXN-9261 RXN-9260) PRIMARIES - (RXN-9271 NIL (CPD-9836)) PRIMARIES - (RXN-9272 (SCOPOLETIN) (CPD-9836)) PRIMARIES - (RXN-9289 (CPD-8097) (CPD-9831)) PRIMARIES - (2.3.1.133-RXN (P-COUMAROYL-COA) (CPD-412)) REACTION-LAYOUT - (RXN-9289 (:LEFT-PRIMARIES CPD-8097) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9831)) REACTION-LAYOUT - (RXN-9271 (:LEFT-PRIMARIES CPD-9831) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9836)) REACTION-LAYOUT - (RXN-9272 (:LEFT-PRIMARIES SCOPOLETIN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9836)) REACTION-LAYOUT - (RXN-9273 (:LEFT-PRIMARIES SCOPOLETIN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9827)) REACTION-LAYOUT - (RXN-9274 (:LEFT-PRIMARIES CPD-9831) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9827)) REACTION-LAYOUT - (RXN-1104 (:LEFT-PRIMARIES CPD-676) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FERULIC-ACID)) REACTION-LAYOUT - (RXN-9270 (:LEFT-PRIMARIES CPD-9807) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SCOPOLETIN)) REACTION-LAYOUT - (RXN-9269 (:LEFT-PRIMARIES FERULIC-ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9807)) REACTION-LAYOUT - (RXN-9268 (:LEFT-PRIMARIES CPD-9803) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8097)) REACTION-LAYOUT - (RXN-9267 (:LEFT-PRIMARIES CPD-676) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9803)) REACTION-LAYOUT - (RXN-9266 (:LEFT-PRIMARIES CAFFEOYLSHIKIMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-676)) REACTION-LAYOUT - (RXN-2581 (:LEFT-PRIMARIES CPD-412) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CAFFEOYLSHIKIMATE)) REACTION-LAYOUT - (2.3.1.133-RXN (:LEFT-PRIMARIES P-COUMAROYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-412)) REACTION-LAYOUT - (4-COUMARATE--COA-LIGASE-RXN (:LEFT-PRIMARIES COUMARATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES P-COUMAROYL-COA)) REACTION-LAYOUT - (RXN-9262 (:LEFT-PRIMARIES CPD-8186) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8097)) REACTION-LAYOUT - (RXN-9265 (:LEFT-PRIMARIES CPD-9828) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9831)) REACTION-LAYOUT - (RXN-9264 (:LEFT-PRIMARIES CPD-8186) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9828)) REACTION-LAYOUT - (RXN-9263 (:LEFT-PRIMARIES CPD-8097) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SCOPOLETIN)) REACTION-LAYOUT - (RXN-9261 (:LEFT-PRIMARIES CPD-9800) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8186)) REACTION-LAYOUT - (RXN-9260 (:LEFT-PRIMARIES COUMARATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9800)) REACTION-LIST - RXN-9289 REACTION-LIST - RXN-9271 REACTION-LIST - RXN-9272 REACTION-LIST - RXN-9273 REACTION-LIST - RXN-9274 REACTION-LIST - RXN-1104 REACTION-LIST - RXN-9270 REACTION-LIST - RXN-9269 REACTION-LIST - RXN-9268 REACTION-LIST - RXN-9267 REACTION-LIST - RXN-9266 REACTION-LIST - RXN-2581 REACTION-LIST - 2.3.1.133-RXN REACTION-LIST - 4-COUMARATE--COA-LIGASE-RXN REACTION-LIST - RXN-9262 REACTION-LIST - RXN-9265 REACTION-LIST - RXN-9264 REACTION-LIST - RXN-9263 REACTION-LIST - RXN-9261 REACTION-LIST - RXN-9260 SYNONYMS - coumarin biosynthesis // UNIQUE-ID - PWY-5349 TYPES - COUMARIN-SYN COMMON-NAME - esculetin biosynthesis CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |walk| PATHWAY-LINKS - (CPD-676 PWY-2181) PREDECESSORS - (RXN-8333 RXN-8332) PREDECESSORS - (RXN-8334 RXN-8333) PREDECESSORS - (RXN-8335 RXN-8334) PREDECESSORS - (RXN-8332 RXN-8336) PRIMARIES - (RXN-8335 (CPD-8096) (CPD-8097)) PRIMARIES - (RXN-8333 (CPD-8094) (CPD-8095)) REACTION-LAYOUT - (RXN-8336 (:LEFT-PRIMARIES CPD-676) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8098)) REACTION-LAYOUT - (RXN-8335 (:LEFT-PRIMARIES CPD-8096) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8097)) REACTION-LAYOUT - (RXN-8334 (:LEFT-PRIMARIES CPD-8095) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8096)) REACTION-LAYOUT - (RXN-8333 (:LEFT-PRIMARIES CPD-8094) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8095)) REACTION-LAYOUT - (RXN-8332 (:LEFT-PRIMARIES CPD-8098) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8094)) REACTION-LIST - RXN-8336 REACTION-LIST - RXN-8335 REACTION-LIST - RXN-8334 REACTION-LIST - RXN-8333 REACTION-LIST - RXN-8332 // UNIQUE-ID - PWY-83 TYPES - Metabolic-Clusters TYPES - LIGNIN-SYN COMMON-NAME - monolignol glucosides biosynthesis CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |hartmut| PATHWAY-LINKS - (CONIFERYL-ALDEHYDE PWY-361) PATHWAY-LINKS - (SINAPALDEHYDE PWY-361) PATHWAY-LINKS - (SINAPYL-ALCOHOL PWY-361) PREDECESSORS - (RXN-95) PREDECESSORS - (RXN-92) PREDECESSORS - (RXN-91) PREDECESSORS - (RXN-90) PRIMARIES - (RXN-95 (CPD-94) (CPD-82)) PRIMARIES - (RXN-92 (SINAPALDEHYDE) (CPD-79)) PRIMARIES - (RXN-91 (CONIFERYL-ALDEHYDE) (CPD-81)) PRIMARIES - (RXN-90 (SINAPYL-ALCOHOL) (CPD-63)) PRIMARIES - (2.4.1.111-RXN (CONIFERYL-ALCOHOL) (CPD-1777)) REACTION-LAYOUT - (RXN-95 (:LEFT-PRIMARIES CPD-94) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-82)) REACTION-LAYOUT - (RXN-92 (:LEFT-PRIMARIES SINAPALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-79)) REACTION-LAYOUT - (RXN-91 (:LEFT-PRIMARIES CONIFERYL-ALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-81)) REACTION-LAYOUT - (RXN-90 (:LEFT-PRIMARIES SINAPYL-ALCOHOL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-63)) REACTION-LIST - RXN-95 REACTION-LIST - RXN-92 REACTION-LIST - RXN-91 REACTION-LIST - RXN-90 // UNIQUE-ID - PWY-5791 TYPES - QUINONE-SYN TYPES - DHNA-Biosynthesis COMMON-NAME - 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - SRI CREDITS - |caspi| CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |zhang| PATHWAY-LINKS - (CHORISMATE ARO-PWY) PREDECESSORS - (RXN-9311 NAPHTHOATE-SYN-RXN) PREDECESSORS - (NAPHTHOATE-SYN-RXN RXN-7614) PREDECESSORS - (RXN-7614 O-SUCCINYLBENZOATE-COA-SYN-RXN) PREDECESSORS - (O-SUCCINYLBENZOATE-COA-SYN-RXN RXN-9310) PREDECESSORS - (RXN-9310 2.5.1.64-RXN) PREDECESSORS - (2.5.1.64-RXN ISOCHORSYN-RXN) PRIMARIES - (RXN-9310 NIL (CPD-9923)) REACTION-LAYOUT - (RXN-9311 (:LEFT-PRIMARIES CPD-9925) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROXYNAPHTHOATE)) REACTION-LAYOUT - (NAPHTHOATE-SYN-RXN (:LEFT-PRIMARIES CPD-6972) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9925)) REACTION-LAYOUT - (RXN-9310 (:LEFT-PRIMARIES CPD-9924) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9923)) REACTION-LAYOUT - (RXN-7614 (:LEFT-PRIMARIES O-SUCCINYLBENZOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6972)) REACTION-LAYOUT - (O-SUCCINYLBENZOATE-COA-SYN-RXN (:LEFT-PRIMARIES CPD-9923) (:DIRECTION :L2R) (:RIGHT-PRIMARIES O-SUCCINYLBENZOATE)) REACTION-LAYOUT - (2.5.1.64-RXN (:LEFT-PRIMARIES ISOCHORISMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9924)) REACTION-LAYOUT - (ISOCHORSYN-RXN (:LEFT-PRIMARIES CHORISMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ISOCHORISMATE)) REACTION-LIST - RXN-9311 REACTION-LIST - NAPHTHOATE-SYN-RXN REACTION-LIST - RXN-9310 REACTION-LIST - RXN-7614 REACTION-LIST - O-SUCCINYLBENZOATE-COA-SYN-RXN REACTION-LIST - 2.5.1.64-RXN REACTION-LIST - ISOCHORSYN-RXN SYNONYMS - DHNA biosynthesis // UNIQUE-ID - PWY-5474 TYPES - N-CONTAINING-SECONDARY-CMPD-SYN COMMON-NAME - hydroxycinnamic acid tyramine amides biosynthesis CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |zhang| PREDECESSORS - (RXN-8715 TYROSINE-DECARBOXYLASE-RXN) PREDECESSORS - (RXN-8714 TYROSINE-DECARBOXYLASE-RXN) PREDECESSORS - (RXN-8713 TYROSINE-DECARBOXYLASE-RXN) PREDECESSORS - (TYRAMINE-N-FERULOYLTRANSFERASE-RXN TYROSINE-DECARBOXYLASE-RXN) PRIMARIES - (RXN-8715 (TYRAMINE) (CPD-8943)) PRIMARIES - (RXN-8714 (TYRAMINE) (CPD-8942)) PRIMARIES - (RXN-8713 (TYRAMINE) (CPD-8941)) PRIMARIES - (TYRAMINE-N-FERULOYLTRANSFERASE-RXN (TYRAMINE) (CPD-440)) REACTION-LAYOUT - (RXN-8715 (:LEFT-PRIMARIES TYRAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8943)) REACTION-LAYOUT - (RXN-8714 (:LEFT-PRIMARIES TYRAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8942)) REACTION-LAYOUT - (RXN-8713 (:LEFT-PRIMARIES TYRAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8941)) REACTION-LAYOUT - (TYRAMINE-N-FERULOYLTRANSFERASE-RXN (:LEFT-PRIMARIES TYRAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-440)) REACTION-LAYOUT - (TYROSINE-DECARBOXYLASE-RXN (:LEFT-PRIMARIES TYR) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TYRAMINE)) REACTION-LIST - RXN-8715 REACTION-LIST - RXN-8714 REACTION-LIST - RXN-8713 REACTION-LIST - TYRAMINE-N-FERULOYLTRANSFERASE-RXN REACTION-LIST - TYROSINE-DECARBOXYLASE-RXN SYNONYMS - hydroxycinnamic acid amides biosynthesis // UNIQUE-ID - PWY-1187 TYPES - GLUCOSINOLATE-SYN COMMON-NAME - glucosinolate biosynthesis from homomethionine CITATIONS - :EV-COMP-AINF:3497824357:liya PREDECESSORS - (RXN-2224 BENZOATE--COA-LIGASE-RXN) PREDECESSORS - (RXN-2224 RXN-2223) PREDECESSORS - (RXN-2223 RXN-2221) PREDECESSORS - (RXN-2222 RXN-2221) PREDECESSORS - (RXN-2221 RXN-2209) PREDECESSORS - (RXN-2209 RXN-2208) PREDECESSORS - (RXN-2207 RXN-2206) PREDECESSORS - (RXN-8052 RXN-2207) PREDECESSORS - (RXN-2208 RXN-8052) PRIMARIES - (RXN-2224 (BENZOYLCOA 3-HYDROXYPROPYL-GLUCOSINOLATE) (3-BENZOYLOXYPROPYL-GLUCOSINOLATE)) PRIMARIES - (BENZOATE--COA-LIGASE-RXN (BENZOATE) (BENZOYLCOA)) PRIMARIES - (RXN-2209 (3-METHYLTHIOPROPYL-DESULFO-GLUCOSINOLATE) (3-METHYLTHIOPROPYL-GLUCOSINOLATE)) PRIMARIES - (RXN-2207 (3-METHYLTHIOPROPANALDOXIME) (CPD-7546)) PRIMARIES - (RXN-2208 (3-METHYLTHIOPROPYLHYDROXAMIC-ACID) (3-METHYLTHIOPROPYL-DESULFO-GLUCOSINOLATE)) REACTION-LAYOUT - (BENZOATE--COA-LIGASE-RXN (:LEFT-PRIMARIES BENZOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES BENZOYLCOA)) REACTION-LAYOUT - (RXN-8052 (:LEFT-PRIMARIES CPD-7546) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-METHYLTHIOPROPYLHYDROXAMIC-ACID)) REACTION-LAYOUT - (RXN-2224 (:LEFT-PRIMARIES BENZOYLCOA 3-HYDROXYPROPYL-GLUCOSINOLATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-BENZOYLOXYPROPYL-GLUCOSINOLATE)) REACTION-LAYOUT - (RXN-2223 (:LEFT-PRIMARIES 3-METHYLSULFINYLPROPYL-GLUCOSINOLATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-HYDROXYPROPYL-GLUCOSINOLATE)) REACTION-LAYOUT - (RXN-2222 (:LEFT-PRIMARIES 3-METHYLSULFINYLPROPYL-GLUCOSINOLATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-PROPENYL-GLUCOSINOLATE)) REACTION-LAYOUT - (RXN-2221 (:LEFT-PRIMARIES 3-METHYLTHIOPROPYL-GLUCOSINOLATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-METHYLSULFINYLPROPYL-GLUCOSINOLATE)) REACTION-LAYOUT - (RXN-2209 (:LEFT-PRIMARIES 3-METHYLTHIOPROPYL-DESULFO-GLUCOSINOLATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-METHYLTHIOPROPYL-GLUCOSINOLATE)) REACTION-LAYOUT - (RXN-2208 (:LEFT-PRIMARIES 3-METHYLTHIOPROPYLHYDROXAMIC-ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-METHYLTHIOPROPYL-DESULFO-GLUCOSINOLATE)) REACTION-LAYOUT - (RXN-2207 (:LEFT-PRIMARIES 3-METHYLTHIOPROPANALDOXIME) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7546)) REACTION-LAYOUT - (RXN-2206 (:LEFT-PRIMARIES HOMOMETHIONINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-METHYLTHIOPROPANALDOXIME)) REACTION-LIST - BENZOATE--COA-LIGASE-RXN REACTION-LIST - RXN-8052 REACTION-LIST - RXN-2224 REACTION-LIST - RXN-2223 REACTION-LIST - RXN-2222 REACTION-LIST - RXN-2221 REACTION-LIST - RXN-2209 REACTION-LIST - RXN-2208 REACTION-LIST - RXN-2207 REACTION-LIST - RXN-2206 // UNIQUE-ID - PWY-5808 TYPES - TERPENOPHENOLICS-SYN COMMON-NAME - hyperforin biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - O-27 CREDITS - |pujar| HYPOTHETICAL-REACTIONS - RXN-9135 PREDECESSORS - (RXN-9135 RXN-7813) PREDECESSORS - (RXN-7813 RXN-7812) PREDECESSORS - (RXN-7812 RXN-7805) REACTION-LAYOUT - (RXN-9135 (:LEFT-PRIMARIES CPD-7107) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9635)) REACTION-LAYOUT - (RXN-7813 (:LEFT-PRIMARIES 4-PRENYLPHLORISOBUTYROPHENONE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7107)) REACTION-LAYOUT - (RXN-7812 (:LEFT-PRIMARIES CPD-7104) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 4-PRENYLPHLORISOBUTYROPHENONE PROTON)) REACTION-LAYOUT - (RXN-7805 (:LEFT-PRIMARIES PROTON) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7104)) REACTION-LIST - RXN-9135 REACTION-LIST - RXN-7813 REACTION-LIST - RXN-7812 REACTION-LIST - RXN-7805 // UNIQUE-ID - PWY-2301 TYPES - Myo-Inositol-Biosynthesis COMMON-NAME - myo-inositol biosynthesis CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - SRI CREDITS - |caspi| PREDECESSORS - (MYO-INOSITOL-1OR-4-MONOPHOSPHATASE-RXN MYO-INOSITOL-1-PHOSPHATE-SYNTHASE-RXN) PREDECESSORS - (MYO-INOSITOL-1-PHOSPHATE-SYNTHASE-RXN) REACTION-LAYOUT - (MYO-INOSITOL-1OR-4-MONOPHOSPHATASE-RXN (:LEFT-PRIMARIES 1-L-MYO-INOSITOL-1-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MYO-INOSITOL)) REACTION-LAYOUT - (MYO-INOSITOL-1-PHOSPHATE-SYNTHASE-RXN (:LEFT-PRIMARIES |D-glucose-6-phosphate|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 1-L-MYO-INOSITOL-1-P)) REACTION-LIST - MYO-INOSITOL-1OR-4-MONOPHOSPHATASE-RXN REACTION-LIST - MYO-INOSITOL-1-PHOSPHATE-SYNTHASE-RXN // UNIQUE-ID - PWY-4661 TYPES - Phytate-Biosynthesis COMMON-NAME - lipid-independent phytate biosynthesis CITATIONS - :EV-COMP-AINF:3497824357:liya PREDECESSORS - (RXN-7202 MYO-INOSITOL-1-KINASE-RXN) PREDECESSORS - (MYO-INOSITOL-1-KINASE-RXN) PREDECESSORS - (RXN-7163 2.7.1.134-RXN) PREDECESSORS - (2.7.1.134-RXN RXN-7204) PREDECESSORS - (RXN-7204 RXN-7203) PREDECESSORS - (RXN-7203 RXN-7202) PREDECESSORS - (MYO-INOSITOL-1-PHOSPHATE-SYNTHASE-RXN) PREDECESSORS - (RXN-7202 MYO-INOSITOL-1-PHOSPHATE-SYNTHASE-RXN) PRIMARIES - (MYO-INOSITOL-1-KINASE-RXN (MYO-INOSITOL) (1-L-MYO-INOSITOL-1-P)) PRIMARIES - (MYO-INOSITOL-1-PHOSPHATE-SYNTHASE-RXN (GLC-6-P) (1-L-MYO-INOSITOL-1-P)) PRIMARIES - (RXN-7202 (1-L-MYO-INOSITOL-1-P) (D-MYO-INOSITOL-34-BISPHOSPHATE)) PRIMARIES - (RXN-7163 (CPD-1107) (MI-HEXAKISPHOSPHATE)) PRIMARIES - (2.7.1.134-RXN (CPD-178) (CPD-1107)) PRIMARIES - (RXN-7204 (CPD-6681) (CPD-178)) PRIMARIES - (RXN-7203 (D-MYO-INOSITOL-34-BISPHOSPHATE) (CPD-6681)) REACTION-LAYOUT - (MYO-INOSITOL-1-KINASE-RXN (:LEFT-PRIMARIES MYO-INOSITOL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 1-L-MYO-INOSITOL-1-P)) REACTION-LAYOUT - (RXN-7202 (:LEFT-PRIMARIES 1-L-MYO-INOSITOL-1-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES D-MYO-INOSITOL-34-BISPHOSPHATE)) REACTION-LAYOUT - (MYO-INOSITOL-1-PHOSPHATE-SYNTHASE-RXN (:LEFT-PRIMARIES) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 1-L-MYO-INOSITOL-1-P)) REACTION-LAYOUT - (2.7.1.134-RXN (:LEFT-PRIMARIES CPD-178) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-1107)) REACTION-LAYOUT - (RXN-7203 (:LEFT-PRIMARIES D-MYO-INOSITOL-34-BISPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6681)) REACTION-LAYOUT - (RXN-7204 (:LEFT-PRIMARIES CPD-6681) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-178)) REACTION-LAYOUT - (RXN-7163 (:LEFT-PRIMARIES CPD-1107) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MI-HEXAKISPHOSPHATE)) REACTION-LIST - MYO-INOSITOL-1-KINASE-RXN REACTION-LIST - RXN-7202 REACTION-LIST - MYO-INOSITOL-1-PHOSPHATE-SYNTHASE-RXN REACTION-LIST - 2.7.1.134-RXN REACTION-LIST - RXN-7203 REACTION-LIST - RXN-7204 REACTION-LIST - RXN-7163 SYNONYMS - lipid-independent phytic acid biosynthesis SYNONYMS - lipid-independent InsP6 biosynthesis // UNIQUE-ID - PWY-5945 TYPES - TETRATERPENOID-SYN TYPES - CAROTENOID-SYN TYPES - Interconversion COMMON-NAME - antheraxanthin and violaxanthin biosynthesis CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (CPD1F-133 PWY-695) PREDECESSORS - (RXN-7979 RXN-7978) PREDECESSORS - (RXN-7984 RXN-7978) PREDECESSORS - (RXN-7978 RXN-7985) PREDECESSORS - (RXN-7985 RXN-7978) REACTION-LAYOUT - (RXN-7979 (:LEFT-PRIMARIES CPD1F-131) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-133)) REACTION-LAYOUT - (RXN-7984 (:LEFT-PRIMARIES CPD1F-133) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CPD1F-131)) REACTION-LAYOUT - (RXN-7978 (:LEFT-PRIMARIES CPD1F-130) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-131)) REACTION-LAYOUT - (RXN-7985 (:LEFT-PRIMARIES CPD1F-131) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-130)) REACTION-LIST - RXN-7979 REACTION-LIST - RXN-7984 REACTION-LIST - RXN-7978 REACTION-LIST - RXN-7985 SYNONYMS - xanthophyll cycle // UNIQUE-ID - PWY-6287 TYPES - TETRATERPENOID-SYN TYPES - CAROTENOID-SYN COMMON-NAME - neurosporene biosynthesis CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - SRI CREDITS - |caspi| IN-PATHWAY - PWY-5942 PATHWAY-LINKS - (NEUROSPORENE PWY-5942) PATHWAY-LINKS - (GERANYLGERANYL-PP PWY-5120) PREDECESSORS - (2.5.1.32-RXN) PREDECESSORS - (RXN-8002 2.5.1.32-RXN) PREDECESSORS - (RXN-8023 RXN-8002) PREDECESSORS - (RXN-8024 RXN-8023) PREDECESSORS - (RXN-8022 RXN-8024) PRIMARIES - (RXN-7979 (CPD1F-131) (CPD1F-133)) PRIMARIES - (RXN-7978 (CPD1F-130) (CPD1F-131)) PRIMARIES - (RXN-7985 (CPD1F-131) (CPD1F-130)) PRIMARIES - (RXN-8026 (CPD-7409) (CPD1F-130)) PRIMARIES - (RXN-8025 (CPD1F-129) (CPD-7409)) PRIMARIES - (RXN-8024 (CPD-7408) (CPD1F-98)) PRIMARIES - (RXN-8023 (PHYTOENE) (CPD-7408)) PRIMARIES - (RXN-8002 (CPD-464) (PHYTOENE)) PRIMARIES - (2.5.1.32-RXN (GERANYLGERANYL-PP) (CPD-464)) PRIMARIES - (1.14.99.30-RXN (NEUROSPORENE) (CPD1F-114)) PRIMARIES - (RXN-8022 (CPD1F-98) (NEUROSPORENE)) PRIMARIES - (FARNESYLTRANSTRANSFERASE-RXN (FARNESYL-PP DELTA3-ISOPENTENYL-PP) (GERANYLGERANYL-PP)) PRIMARIES - (RXN-5962 (CPD-5661) (CPD1F-119)) PRIMARIES - (RXN-5961 (CPD1F-118) (CPD-5661)) REACTION-LAYOUT - (RXN-8024 (:LEFT-PRIMARIES CPD-7408) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD1F-98)) REACTION-LAYOUT - (RXN-8023 (:LEFT-PRIMARIES PHYTOENE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7408)) REACTION-LAYOUT - (RXN-8002 (:LEFT-PRIMARIES CPD-464) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHYTOENE)) REACTION-LAYOUT - (2.5.1.32-RXN (:LEFT-PRIMARIES GERANYLGERANYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-464)) REACTION-LAYOUT - (RXN-8022 (:LEFT-PRIMARIES CPD1F-98) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NEUROSPORENE)) REACTION-LIST - RXN-8024 REACTION-LIST - RXN-8023 REACTION-LIST - RXN-8002 REACTION-LIST - 2.5.1.32-RXN REACTION-LIST - RXN-8022 SUPER-PATHWAYS - PWY-5942 // UNIQUE-ID - PWY-6304 TYPES - DITERPENOID-SYN COMMON-NAME - casbene biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - O-28 CREDITS - |pujar| PATHWAY-LINKS - (GERANYLGERANYL-PP PWY-5120) PREDECESSORS - (CASBENE-SYNTHASE-RXN) REACTION-LAYOUT - (CASBENE-SYNTHASE-RXN (:LEFT-PRIMARIES GERANYLGERANYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-684)) REACTION-LIST - CASBENE-SYNTHASE-RXN // UNIQUE-ID - PWY-5063 TYPES - Phytyl-Diphosphate-Biosynthesis COMMON-NAME - phytyl diphosphate biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (GERANYLGERANYL-PP PWY-5120 PWY-5121) PATHWAY-LINKS - (DELTA3-ISOPENTENYL-PP NONMEVIPP-PWY) PATHWAY-LINKS - (PHYTYL-PYROPHOSPHATE PWY-1422 PWY-5086) PREDECESSORS - (RXN-7660 RXN-7659) PREDECESSORS - (RXN-7659 RXN-7658) PRIMARIES - (FARNESYLTRANSTRANSFERASE-RXN (FARNESYL-PP DELTA3-ISOPENTENYL-PP) (GERANYLGERANYL-PP)) PRIMARIES - (RXN-7660 (CPD-7003) (PHYTYL-PYROPHOSPHATE)) PRIMARIES - (RXN-7659 (CPD-7002) (CPD-7003)) PRIMARIES - (RXN-7658 (GERANYLGERANYL-PP) (CPD-7002)) REACTION-LAYOUT - (RXN-7658 (:LEFT-PRIMARIES GERANYLGERANYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7002)) REACTION-LAYOUT - (RXN-7659 (:LEFT-PRIMARIES CPD-7002) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7003)) REACTION-LAYOUT - (RXN-7660 (:LEFT-PRIMARIES CPD-7003) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHYTYL-PYROPHOSPHATE)) REACTION-LIST - RXN-7658 REACTION-LIST - RXN-7659 REACTION-LIST - RXN-7660 SYNONYMS - phytyl pyrophosphate biosynthesis SYNONYMS - phytyl-PP biosynthesis // UNIQUE-ID - PWY-5670 TYPES - TRITERPENOID-SYN TYPES - Other-biosynthesis COMMON-NAME - epoxysqualene biosynthesis CREDITS - SRI CREDITS - |caspi| IN-PATHWAY - PWY-2541 PATHWAY-LINKS - (EPOXYSQUALENE PWY-2541) PATHWAY-LINKS - (FARNESYL-PP PWY-5123) PATHWAY-LINKS - (CPD-707 PWY-2582 PWY-699) PREDECESSORS - (SQUALENE-MONOOXYGENASE-RXN RXN66-281) PREDECESSORS - (RXN66-281 2.5.1.21-RXN) PRIMARIES - (RXN-8352 (CPD-8134) (CPD-4161)) PRIMARIES - (RXN-8353 (CPD-4141) (CPD-8134)) PRIMARIES - (2.1.1.143-RXN (CPD-4101) (CPD-4124)) REACTION-LAYOUT - (SQUALENE-MONOOXYGENASE-RXN (:LEFT-PRIMARIES SQUALENE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES EPOXYSQUALENE)) REACTION-LAYOUT - (RXN66-281 (:LEFT-PRIMARIES CPD-465) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SQUALENE)) REACTION-LAYOUT - (2.5.1.21-RXN (:LEFT-PRIMARIES FARNESYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-465)) REACTION-LIST - SQUALENE-MONOOXYGENASE-RXN REACTION-LIST - RXN66-281 REACTION-LIST - 2.5.1.21-RXN SUPER-PATHWAYS - PWY-2541 // UNIQUE-ID - PWY-6105 TYPES - TRITERPENOID-SYN COMMON-NAME - C30 botryococcene biosynthesis CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - O-28 CREDITS - |pujar| PREDECESSORS - (RXN66-281 2.5.1.21-RXN) PREDECESSORS - (2.5.1.21-RXN) PREDECESSORS - (RXN-9911) REACTION-LAYOUT - (RXN66-281 (:LEFT-PRIMARIES CPD-465) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SQUALENE)) REACTION-LAYOUT - (2.5.1.21-RXN (:LEFT-PRIMARIES FARNESYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-465)) REACTION-LAYOUT - (RXN-9911 (:LEFT-PRIMARIES FARNESYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-10662)) REACTION-LIST - RXN66-281 REACTION-LIST - 2.5.1.21-RXN REACTION-LIST - RXN-9911 SYNONYMS - botryococcene hydrocarbon biosynthesis // UNIQUE-ID - PWY-922 TYPES - ISOPRENOIDS TYPES - Cofactor-Biosynthesis TYPES - Lipid-Biosynthesis COMMON-NAME - mevalonate pathway I CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - O-18 CREDITS - |pellegrini-toole| IN-PATHWAY - PWY-5910 PATHWAY-LINKS - (MEVALONATE PWY-5074) PATHWAY-LINKS - (CPD-4211 PWY-2781 PWY-5120 PWY-5123 PWY-2681 PWY-5122) PATHWAY-LINKS - (FARNESYL-PP PWY-2541) PREDECESSORS - (IPPISOM-RXN DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN) PREDECESSORS - (DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN PHOSPHOMEVALONATE-KINASE-RXN) PREDECESSORS - (PHOSPHOMEVALONATE-KINASE-RXN MEVALONATE-KINASE-RXN) PREDECESSORS - (MEVALONATE-KINASE-RXN 1.1.1.34-RXN) PREDECESSORS - (1.1.1.34-RXN HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN) PREDECESSORS - (HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN ACETYL-COA-ACETYLTRANSFER-RXN) PRIMARIES - (HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN (ACETOACETYL-COA) (3-HYDROXY-3-METHYL-GLUTARYL-COA)) REACTION-LAYOUT - (IPPISOM-RXN (:LEFT-PRIMARIES DELTA3-ISOPENTENYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4211)) REACTION-LAYOUT - (DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN (:LEFT-PRIMARIES CPD-641) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DELTA3-ISOPENTENYL-PP)) REACTION-LAYOUT - (PHOSPHOMEVALONATE-KINASE-RXN (:LEFT-PRIMARIES CPD-499) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-641)) REACTION-LAYOUT - (MEVALONATE-KINASE-RXN (:LEFT-PRIMARIES MEVALONATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-499)) REACTION-LAYOUT - (1.1.1.34-RXN (:LEFT-PRIMARIES MEVALONATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 3-HYDROXY-3-METHYL-GLUTARYL-COA)) REACTION-LAYOUT - (HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN (:LEFT-PRIMARIES ACETYL-COA ACETOACETYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-HYDROXY-3-METHYL-GLUTARYL-COA)) REACTION-LAYOUT - (ACETYL-COA-ACETYLTRANSFER-RXN (:LEFT-PRIMARIES ACETYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ACETOACETYL-COA)) REACTION-LIST - IPPISOM-RXN REACTION-LIST - DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN REACTION-LIST - PHOSPHOMEVALONATE-KINASE-RXN REACTION-LIST - MEVALONATE-KINASE-RXN REACTION-LIST - 1.1.1.34-RXN REACTION-LIST - HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN REACTION-LIST - ACETYL-COA-ACETYLTRANSFER-RXN SUPER-PATHWAYS - PWY-5910 SYNONYMS - isoprenoid pathway SYNONYMS - MVA pathway SYNONYMS - isopentenyl diphosphate biosynthesis - mevalonate dependent // UNIQUE-ID - PWY-5829 TYPES - MONOTERPENOID-SYN COMMON-NAME - geraniol and geranial biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - O-27 CREDITS - |pujar| PATHWAY-LINKS - (GERANYL-PP PWY-5122) PREDECESSORS - (RXN-9193 GERANIOL-DEHYDROGENASE-RXN) PREDECESSORS - (GERANIOL-DEHYDROGENASE-RXN RXN-8618) REACTION-LAYOUT - (RXN-9193 (:LEFT-PRIMARIES GERANIAL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9762)) REACTION-LAYOUT - (GERANIOL-DEHYDROGENASE-RXN (:LEFT-PRIMARIES GERANIOL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GERANIAL)) REACTION-LAYOUT - (RXN-8618 (:LEFT-PRIMARIES GERANYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GERANIOL)) REACTION-LIST - RXN-9193 REACTION-LIST - GERANIOL-DEHYDROGENASE-RXN REACTION-LIST - RXN-8618 SYNONYMS - citral biosynthesis // UNIQUE-ID - PWY-6012 TYPES - Cofactor-Biosynthesis COMMON-NAME - acyl carrier protein metabolism CITATIONS - :EV-COMP-AINF:3497824359:liya CREDITS - SRI CREDITS - |caspi| PREDECESSORS - (3.1.4.14-RXN HOLO-ACP-SYNTH-RXN) PREDECESSORS - (HOLO-ACP-SYNTH-RXN 3.1.4.14-RXN) PRIMARIES - (3.1.4.14-RXN (ACP) (|apo-ACP|)) REACTION-LAYOUT - (HOLO-ACP-SYNTH-RXN (:LEFT-PRIMARIES |apo-ACP|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ACP)) REACTION-LAYOUT - (3.1.4.14-RXN (:LEFT-PRIMARIES ACP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |apo-ACP|)) REACTION-LIST - HOLO-ACP-SYNTH-RXN REACTION-LIST - 3.1.4.14-RXN SYNONYMS - [acp] metabolism SYNONYMS - ACP metabolism // UNIQUE-ID - SAM-PWY TYPES - Cofactor-Biosynthesis COMMON-NAME - S-adenosylmethionine biosynthesis CREDITS - O-18 CREDITS - |riley| IN-PATHWAY - PWY-6151 PATHWAY-LINKS - (MET PWY-702) PREDECESSORS - (S-ADENMETSYN-RXN) PRIMARIES - (HOMOCYSMET-RXN (HOMO-CYS) NIL) REACTION-LAYOUT - (S-ADENMETSYN-RXN (:LEFT-PRIMARIES MET) (:DIRECTION :L2R) (:RIGHT-PRIMARIES S-ADENOSYLMETHIONINE)) REACTION-LIST - S-ADENMETSYN-RXN SUPER-PATHWAYS - PWY-6151 // UNIQUE-ID - PWY-5194 TYPES - Porphyrin-Compounds-Biosynthesis COMMON-NAME - siroheme biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (UROPORPHYRINOGEN-III PWY-5188) PREDECESSORS - (RXN-8675 UROPORIIIMETHYLTRANSA-RXN) PREDECESSORS - (DIMETHUROPORDEHYDROG-RXN RXN-8675) PREDECESSORS - (SIROHEME-FERROCHELAT-RXN DIMETHUROPORDEHYDROG-RXN) REACTION-LAYOUT - (RXN-8675 (:LEFT-PRIMARIES CPD-9038) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROSIROHYDROCHLORIN)) REACTION-LAYOUT - (UROPORIIIMETHYLTRANSA-RXN (:LEFT-PRIMARIES UROPORPHYRINOGEN-III) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9038)) REACTION-LAYOUT - (SIROHEME-FERROCHELAT-RXN (:LEFT-PRIMARIES SIROHYDROCHLORIN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SIROHEME)) REACTION-LAYOUT - (DIMETHUROPORDEHYDROG-RXN (:LEFT-PRIMARIES DIHYDROSIROHYDROCHLORIN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SIROHYDROCHLORIN)) REACTION-LIST - RXN-8675 REACTION-LIST - UROPORIIIMETHYLTRANSA-RXN REACTION-LIST - SIROHEME-FERROCHELAT-RXN REACTION-LIST - DIMETHUROPORDEHYDROG-RXN // UNIQUE-ID - PWY-5064 TYPES - Chlorophyll-a-Biosynthesis COMMON-NAME - chlorophyll a biosynthesis II CITATIONS - :EV-COMP-AINF:3497824356:liya PATHWAY-LINKS - (CHLOROPHYLL-A PWY-5068) PATHWAY-LINKS - (CHLOROPHYLLIDE-A CHLOROPHYLL-SYN) PREDECESSORS - (RXN-7666 RXN-7665) PREDECESSORS - (RXN-7665 RXN-7664) PREDECESSORS - (RXN-7664 RXN-7663) PREDECESSORS - (RXN-7663) PRIMARIES - (RXN1F-88 (CHLOROPHYLL-A) (CHLOROPHYLL-B)) PRIMARIES - (RXN-7666 (CPD-7006) (CHLOROPHYLL-A)) PRIMARIES - (RXN-7665 (CPD-7004) (CPD-7006)) PRIMARIES - (RXN-7664 (CPD-7005) (CPD-7004)) PRIMARIES - (RXN-7663 (CHLOROPHYLLIDE-A) (CPD-7005)) REACTION-LAYOUT - (RXN-7666 (:LEFT-PRIMARIES CPD-7006) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CHLOROPHYLL-A)) REACTION-LAYOUT - (RXN-7665 (:LEFT-PRIMARIES CPD-7004) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7006)) REACTION-LAYOUT - (RXN-7663 (:LEFT-PRIMARIES CHLOROPHYLLIDE-A) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7005)) REACTION-LAYOUT - (RXN-7664 (:LEFT-PRIMARIES CPD-7005) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7004)) REACTION-LIST - RXN-7666 REACTION-LIST - RXN-7665 REACTION-LIST - RXN-7663 REACTION-LIST - RXN-7664 // UNIQUE-ID - PWY-5086 TYPES - Chlorophyll-a-Biosynthesis COMMON-NAME - chlorophyll a biosynthesis I CITATIONS - :EV-COMP-AINF:3497824358:liya PATHWAY-LINKS - (CHLOROPHYLL-A PWY-5068) PATHWAY-LINKS - (PHYTYL-PYROPHOSPHATE PWY-5063) PATHWAY-LINKS - (CHLOROPHYLLIDE-A CHLOROPHYLL-SYN) PREDECESSORS - (RXN1F-66) PRIMARIES - (RXN1F-66 (CHLOROPHYLLIDE-A PHYTYL-PYROPHOSPHATE) (CHLOROPHYLL-A)) REACTION-LAYOUT - (RXN1F-66 (:LEFT-PRIMARIES PHYTYL-PYROPHOSPHATE CHLOROPHYLLIDE-A) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CHLOROPHYLL-A)) REACTION-LIST - RXN1F-66 // UNIQUE-ID - PWY-5068 TYPES - Chlorophyll-a-Biosynthesis COMMON-NAME - chlorophyll cycle CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - SRI CREDITS - |caspi| CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |tissier| PATHWAY-LINKS - (PHYTYL-PYROPHOSPHATE PWY-5063) PATHWAY-LINKS - (CHLOROPHYLLIDE-A CHLOROPHYLL-SYN) PREDECESSORS - (RXN-7676 RXN1F-66) PREDECESSORS - (RXN1F-66 RXN-7679) PREDECESSORS - (RXN-7679 RXN-7678) PREDECESSORS - (RXN-7677 RXN-7676) PREDECESSORS - (RXN-7674 RXN-7677) PREDECESSORS - (RXN-7678 RXN-7674) PRIMARIES - (RXN-7674 (CPD-7014) (CHLOROPHYLL-B)) PRIMARIES - (RXN1F-66 (CHLOROPHYLL-A) (CHLOROPHYLLIDE-A)) PRIMARIES - (RXN-7677 NIL NIL) PRIMARIES - (RXN-7676 NIL NIL) REACTION-LAYOUT - (RXN-7679 (:LEFT-PRIMARIES CPD-7016) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CHLOROPHYLL-A)) REACTION-LAYOUT - (RXN-7678 (:LEFT-PRIMARIES CPD-7016) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CHLOROPHYLL-B)) REACTION-LAYOUT - (RXN-7677 (:LEFT-PRIMARIES CPD-7015) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7014)) REACTION-LAYOUT - (RXN-7676 (:LEFT-PRIMARIES CHLOROPHYLLIDE-A) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7015)) REACTION-LAYOUT - (RXN-7674 (:LEFT-PRIMARIES CPD-7014) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CHLOROPHYLL-B)) REACTION-LAYOUT - (RXN1F-66 (:LEFT-PRIMARIES CHLOROPHYLLIDE-A) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CHLOROPHYLL-A)) REACTION-LIST - RXN-7679 REACTION-LIST - RXN-7678 REACTION-LIST - RXN-7677 REACTION-LIST - RXN-7676 REACTION-LIST - RXN-7674 REACTION-LIST - RXN1F-66 SYNONYMS - chlorophyll b biosynthesis // UNIQUE-ID - CHLOROPHYLL-SYN TYPES - Chlorophyllide-a-Biosynthesis COMMON-NAME - chlorophyllide a biosynthesis I CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |caspi| CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |Mueller| PATHWAY-LINKS - (UROPORPHYRINOGEN-III PWY-5188) PATHWAY-LINKS - (CHLOROPHYLLIDE-A PWY-5068 PWY-5064 PWY-5086) PATHWAY-LINKS - (PHYTYL-PYROPHOSPHATE PWY-5063) PREDECESSORS - (RXN1F-10 RXN1F-72) PREDECESSORS - (RXN-MG-PROTOPORPHYRIN-METHYLESTER-SYN RXN1F-20) PREDECESSORS - (RXN1F-20 PROTOPORGENOXI-RXN) PREDECESSORS - (UROGENDECARBOX-RXN) PREDECESSORS - (RXN0-1461 UROGENDECARBOX-RXN) PREDECESSORS - (PROTOPORGENOXI-RXN RXN0-1461) PREDECESSORS - (RXN-5284 RXN-5283) PREDECESSORS - (RXN-5283 RXN-5282) PREDECESSORS - (RXN-5282 RXN-MG-PROTOPORPHYRIN-METHYLESTER-SYN) PREDECESSORS - (RXN1F-72 RXN-5284) PRIMARIES - (UROGENDECARBOX-RXN (UROPORPHYRINOGEN-III) (COPROPORPHYRINOGEN_III)) PRIMARIES - (UROGENIIISYN-RXN (HYDROXYMETHYLBILANE) (UROPORPHYRINOGEN-III)) PRIMARIES - (RXN-5284 (131-OXO-MAGNESIUM-PROTOPORPHYRIN-IX-13-M) (DIVINYL-PROTOCHLOROPHYLLIDE-A)) PRIMARIES - (RXN-5283 (13-HYDROXY-MAGNESIUM-PROTOPORP) (131-OXO-MAGNESIUM-PROTOPORPHYRIN-IX-13-M)) PRIMARIES - (RXN-5282 (MG-PROTOPORPHYRIN-MONOMETHYL-ESTER) (13-HYDROXY-MAGNESIUM-PROTOPORP)) PRIMARIES - (RXN1F-88 (CHLOROPHYLL-A) (CHLOROPHYLL-B)) PRIMARIES - (RXN1F-66 (CHLOROPHYLLIDE-A) (CHLOROPHYLL-A)) PRIMARIES - (RXN1F-10 (MONO-VINYL-PROTOCHLOROPHYLLIDE-A) (CHLOROPHYLLIDE-A)) PRIMARIES - (RXN1F-72 (DIVINYL-PROTOCHLOROPHYLLIDE-A) (MONO-VINYL-PROTOCHLOROPHYLLIDE-A)) PRIMARIES - (RXN1F-9 (MG-PROTOPORPHYRIN-MONOMETHYL-ESTER) (DIVINYL-PROTOCHLOROPHYLLIDE-A)) PRIMARIES - (RXN-MG-PROTOPORPHYRIN-METHYLESTER-SYN (MG-PROTOPORPHYRIN) (MG-PROTOPORPHYRIN-MONOMETHYL-ESTER)) PRIMARIES - (RXN1F-20 (PROTOPORPHYRIN_IX) (MG-PROTOPORPHYRIN)) PRIMARIES - (PROTOPORGENOXI-RXN (PROTOPORPHYRINOGEN) (PROTOPORPHYRIN_IX)) PRIMARIES - (RXN0-1461 (COPROPORPHYRINOGEN_III) (PROTOPORPHYRINOGEN)) PRIMARIES - (OHMETHYLBILANESYN-RXN (PORPHOBILINOGEN) (HYDROXYMETHYLBILANE)) PRIMARIES - (PORPHOBILSYNTH-RXN (5-AMINO-LEVULINATE) (PORPHOBILINOGEN)) PRIMARIES - (GSAAMINOTRANS-RXN (GLUTAMATE-1-SEMIALDEHYDE) (5-AMINO-LEVULINATE)) PRIMARIES - (GLUTRNAREDUCT-RXN (|Charged-GLT-tRNAs|) (GLUTAMATE-1-SEMIALDEHYDE)) PRIMARIES - (GLURS-RXN (GLT) (|Charged-GLT-tRNAs|)) REACTION-LAYOUT - (RXN-5282 (:LEFT-PRIMARIES MG-PROTOPORPHYRIN-MONOMETHYL-ESTER) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 13-HYDROXY-MAGNESIUM-PROTOPORP)) REACTION-LAYOUT - (RXN-5283 (:LEFT-PRIMARIES 13-HYDROXY-MAGNESIUM-PROTOPORP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 131-OXO-MAGNESIUM-PROTOPORPHYRIN-IX-13-M)) REACTION-LAYOUT - (RXN-5284 (:LEFT-PRIMARIES 131-OXO-MAGNESIUM-PROTOPORPHYRIN-IX-13-M) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIVINYL-PROTOCHLOROPHYLLIDE-A)) REACTION-LAYOUT - (RXN0-1461 (:LEFT-PRIMARIES COPROPORPHYRINOGEN_III) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PROTOPORPHYRINOGEN)) REACTION-LAYOUT - (RXN1F-10 (:LEFT-PRIMARIES CHLOROPHYLLIDE-A) (:DIRECTION :R2L) (:RIGHT-PRIMARIES MONO-VINYL-PROTOCHLOROPHYLLIDE-A)) REACTION-LAYOUT - (RXN1F-72 (:LEFT-PRIMARIES DIVINYL-PROTOCHLOROPHYLLIDE-A) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MONO-VINYL-PROTOCHLOROPHYLLIDE-A)) REACTION-LAYOUT - (RXN-MG-PROTOPORPHYRIN-METHYLESTER-SYN (:LEFT-PRIMARIES MG-PROTOPORPHYRIN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MG-PROTOPORPHYRIN-MONOMETHYL-ESTER)) REACTION-LAYOUT - (RXN1F-20 (:LEFT-PRIMARIES PROTOPORPHYRIN_IX) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MG-PROTOPORPHYRIN)) REACTION-LAYOUT - (UROGENDECARBOX-RXN (:LEFT-PRIMARIES UROPORPHYRINOGEN-III) (:DIRECTION :L2R) (:RIGHT-PRIMARIES COPROPORPHYRINOGEN_III)) REACTION-LAYOUT - (PROTOPORGENOXI-RXN (:LEFT-PRIMARIES PROTOPORPHYRINOGEN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PROTOPORPHYRIN_IX)) REACTION-LIST - RXN-5282 REACTION-LIST - RXN-5283 REACTION-LIST - RXN-5284 REACTION-LIST - RXN0-1461 REACTION-LIST - RXN1F-10 REACTION-LIST - RXN1F-72 REACTION-LIST - RXN-MG-PROTOPORPHYRIN-METHYLESTER-SYN REACTION-LIST - RXN1F-20 REACTION-LIST - UROGENDECARBOX-RXN REACTION-LIST - PROTOPORGENOXI-RXN // UNIQUE-ID - HEME-BIOSYNTHESIS-II TYPES - HEME-SYN COMMON-NAME - heme biosynthesis from uroporphyrinogen-III I CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - |caspi| CREDITS - |fulcher| CREDITS - SRI CREDITS - |hying| IN-PATHWAY - PWY-5918 PATHWAY-LINKS - (UROPORPHYRINOGEN-III PWY-5188) PATHWAY-LINKS - (PROTOHEME HEMEOSYN-RXN) PREDECESSORS - (PROTOPORGENOXI-RXN RXN0-1461) PREDECESSORS - (RXN0-1461 UROGENDECARBOX-RXN) PREDECESSORS - (PROTOHEMEFERROCHELAT-RXN PROTOPORGENOXI-RXN) REACTION-LAYOUT - (RXN0-1461 (:LEFT-PRIMARIES COPROPORPHYRINOGEN_III) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PROTOPORPHYRINOGEN)) REACTION-LAYOUT - (PROTOHEMEFERROCHELAT-RXN (:LEFT-PRIMARIES PROTOPORPHYRIN_IX) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PROTOHEME)) REACTION-LAYOUT - (PROTOPORGENOXI-RXN (:LEFT-PRIMARIES PROTOPORPHYRINOGEN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PROTOPORPHYRIN_IX)) REACTION-LAYOUT - (UROGENDECARBOX-RXN (:LEFT-PRIMARIES UROPORPHYRINOGEN-III) (:DIRECTION :L2R) (:RIGHT-PRIMARIES COPROPORPHYRINOGEN_III)) REACTION-LIST - RXN0-1461 REACTION-LIST - PROTOHEMEFERROCHELAT-RXN REACTION-LIST - PROTOPORGENOXI-RXN REACTION-LIST - UROGENDECARBOX-RXN SUPER-PATHWAYS - PWY-5918 // UNIQUE-ID - PWY-5188 TYPES - Tetrapyrrole-Biosynthesis COMMON-NAME - tetrapyrrole biosynthesis I CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |caspi| IN-PATHWAY - PWY-5918 PATHWAY-LINKS - (UROPORPHYRINOGEN-III PWY-5194 CHLOROPHYLL-SYN) PREDECESSORS - (UROGENIIISYN-RXN OHMETHYLBILANESYN-RXN) PREDECESSORS - (OHMETHYLBILANESYN-RXN PORPHOBILSYNTH-RXN) PREDECESSORS - (PORPHOBILSYNTH-RXN GSAAMINOTRANS-RXN) PREDECESSORS - (GSAAMINOTRANS-RXN GLUTRNAREDUCT-RXN) PREDECESSORS - (GLUTRNAREDUCT-RXN GLURS-RXN) PREDECESSORS - (GLURS-RXN) REACTION-LAYOUT - (GLURS-RXN (:LEFT-PRIMARIES GLT |GLT-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-GLT-tRNAs|)) REACTION-LAYOUT - (GLUTRNAREDUCT-RXN (:LEFT-PRIMARIES |GLT-tRNAs| GLUTAMATE-1-SEMIALDEHYDE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES |Charged-GLT-tRNAs|)) REACTION-LAYOUT - (GSAAMINOTRANS-RXN (:LEFT-PRIMARIES GLUTAMATE-1-SEMIALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-AMINO-LEVULINATE)) REACTION-LAYOUT - (PORPHOBILSYNTH-RXN (:LEFT-PRIMARIES 5-AMINO-LEVULINATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PORPHOBILINOGEN)) REACTION-LAYOUT - (OHMETHYLBILANESYN-RXN (:LEFT-PRIMARIES PORPHOBILINOGEN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HYDROXYMETHYLBILANE)) REACTION-LAYOUT - (UROGENIIISYN-RXN (:LEFT-PRIMARIES HYDROXYMETHYLBILANE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UROPORPHYRINOGEN-III)) REACTION-LIST - GLURS-RXN REACTION-LIST - GLUTRNAREDUCT-RXN REACTION-LIST - GSAAMINOTRANS-RXN REACTION-LIST - PORPHOBILSYNTH-RXN REACTION-LIST - OHMETHYLBILANESYN-RXN REACTION-LIST - UROGENIIISYN-RXN SUPER-PATHWAYS - PWY-5918 // UNIQUE-ID - PWY-5783 TYPES - Polyprenyl-Biosynthesis COMMON-NAME - octaprenyl diphosphate biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (FARNESYL-PP PWY-5123) PREDECESSORS - (RXN-8992 TRANS-HEXAPRENYLTRANSTRANSFERASE-RXN) PREDECESSORS - (TRANS-HEXAPRENYLTRANSTRANSFERASE-RXN TRANS-PENTAPRENYLTRANSFERASE-RXN) PREDECESSORS - (FARNESYLTRANSTRANSFERASE-RXN) PREDECESSORS - (TRANS-PENTAPRENYLTRANSFERASE-RXN RXN-8813) PREDECESSORS - (RXN-8813 FARNESYLTRANSTRANSFERASE-RXN) PRIMARIES - (FARNESYLTRANSTRANSFERASE-RXN (FARNESYL-PP) (GERANYLGERANYL-PP)) PRIMARIES - (FPPSYN-RXN (GERANYL-PP) (FARNESYL-PP)) PRIMARIES - (GPPSYN-RXN (CPD-4211) (GERANYL-PP)) PRIMARIES - (IPPISOM-RXN (DELTA3-ISOPENTENYL-PP) (CPD-2411)) REACTION-LAYOUT - (RXN-8992 (:LEFT-PRIMARIES ALL-TRANS-HEPTAPRENYL-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OCTAPRENYL-DIPHOSPHATE)) REACTION-LAYOUT - (TRANS-HEXAPRENYLTRANSTRANSFERASE-RXN (:LEFT-PRIMARIES ALL-TRANS-HEXAPRENYL-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALL-TRANS-HEPTAPRENYL-DIPHOSPHATE)) REACTION-LAYOUT - (TRANS-PENTAPRENYLTRANSFERASE-RXN (:LEFT-PRIMARIES ALL-TRANS-PENTAPRENYL-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALL-TRANS-HEXAPRENYL-DIPHOSPHATE)) REACTION-LAYOUT - (RXN-8813 (:LEFT-PRIMARIES GERANYLGERANYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALL-TRANS-PENTAPRENYL-DIPHOSPHATE)) REACTION-LAYOUT - (FARNESYLTRANSTRANSFERASE-RXN (:LEFT-PRIMARIES FARNESYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GERANYLGERANYL-PP)) REACTION-LIST - RXN-8992 REACTION-LIST - TRANS-HEXAPRENYLTRANSTRANSFERASE-RXN REACTION-LIST - TRANS-PENTAPRENYLTRANSFERASE-RXN REACTION-LIST - RXN-8813 REACTION-LIST - FARNESYLTRANSTRANSFERASE-RXN // UNIQUE-ID - HEXPPSYN-PWY TYPES - Polyprenyl-Biosynthesis COMMON-NAME - hexaprenyl diphosphate biosynthesis CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - O-16 CREDITS - |hong| CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (FARNESYL-PP PWY-5123) PREDECESSORS - (FARNESYLTRANSTRANSFERASE-RXN) PREDECESSORS - (TRANS-PENTAPRENYLTRANSFERASE-RXN RXN-8813) PREDECESSORS - (RXN-8813 FARNESYLTRANSTRANSFERASE-RXN) PRIMARIES - (FARNESYLTRANSTRANSFERASE-RXN (FARNESYL-PP) (GERANYLGERANYL-PP)) PRIMARIES - (FPPSYN-RXN (GERANYL-PP) (FARNESYL-PP)) PRIMARIES - (GPPSYN-RXN (CPD-4211) (GERANYL-PP)) PRIMARIES - (IPPISOM-RXN (DELTA3-ISOPENTENYL-PP) (CPD-2411)) REACTION-LAYOUT - (TRANS-PENTAPRENYLTRANSFERASE-RXN (:LEFT-PRIMARIES ALL-TRANS-PENTAPRENYL-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALL-TRANS-HEXAPRENYL-DIPHOSPHATE)) REACTION-LAYOUT - (RXN-8813 (:LEFT-PRIMARIES GERANYLGERANYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALL-TRANS-PENTAPRENYL-DIPHOSPHATE)) REACTION-LAYOUT - (FARNESYLTRANSTRANSFERASE-RXN (:LEFT-PRIMARIES FARNESYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GERANYLGERANYL-PP)) REACTION-LIST - TRANS-PENTAPRENYLTRANSFERASE-RXN REACTION-LIST - RXN-8813 REACTION-LIST - FARNESYLTRANSTRANSFERASE-RXN // UNIQUE-ID - NONMEVIPP-PWY TYPES - Polyprenyl-Biosynthesis COMMON-NAME - methylerythritol phosphate pathway CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - O-18 CREDITS - |pellegrini-toole| CREDITS - SRI CREDITS - |shearer| IN-PATHWAY - PWY-5121 PATHWAY-LINKS - (CPD-4211 PWY-5122) PATHWAY-LINKS - (DELTA3-ISOPENTENYL-PP PWY-5122 (|Polyprenyl-Biosynthesis| . :OUTGOING)) PREDECESSORS - (2.7.7.60-RXN DXPREDISOM-RXN) PREDECESSORS - (RXN0-884 RXN0-882) PREDECESSORS - (DXPREDISOM-RXN DXS-RXN) PREDECESSORS - (ISPH2-RXN RXN0-882) PREDECESSORS - (2.7.1.148-RXN 2.7.7.60-RXN) PREDECESSORS - (RXN0-302 2.7.1.148-RXN) PREDECESSORS - (RXN0-882 RXN0-302) PREDECESSORS - (IPPISOM-RXN ISPH2-RXN) REACTION-LAYOUT - (IPPISOM-RXN (:LEFT-PRIMARIES DELTA3-ISOPENTENYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4211)) REACTION-LAYOUT - (2.7.7.60-RXN (:LEFT-PRIMARIES 2-C-METHYL-D-ERYTHRITOL-4-PHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 4-CYTIDINE-5-DIPHOSPHO-2-C)) REACTION-LAYOUT - (2.7.1.148-RXN (:LEFT-PRIMARIES 4-CYTIDINE-5-DIPHOSPHO-2-C) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-PHOSPHO-4-CYTIDINE-5-DIPHOSPHO-2-C-MET)) REACTION-LAYOUT - (ISPH2-RXN (:LEFT-PRIMARIES DELTA3-ISOPENTENYL-PP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES HYDROXY-METHYL-BUTENYL-DIP)) REACTION-LAYOUT - (RXN0-884 (:LEFT-PRIMARIES CPD-4211) (:DIRECTION :R2L) (:RIGHT-PRIMARIES HYDROXY-METHYL-BUTENYL-DIP)) REACTION-LAYOUT - (RXN0-882 (:LEFT-PRIMARIES HYDROXY-METHYL-BUTENYL-DIP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE)) REACTION-LAYOUT - (RXN0-302 (:LEFT-PRIMARIES 2-PHOSPHO-4-CYTIDINE-5-DIPHOSPHO-2-C-MET) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE)) REACTION-LAYOUT - (DXPREDISOM-RXN (:LEFT-PRIMARIES 2-C-METHYL-D-ERYTHRITOL-4-PHOSPHATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DEOXYXYLULOSE-5P)) REACTION-LAYOUT - (DXS-RXN (:LEFT-PRIMARIES GAP PYRUVATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DEOXYXYLULOSE-5P)) REACTION-LIST - IPPISOM-RXN REACTION-LIST - 2.7.7.60-RXN REACTION-LIST - 2.7.1.148-RXN REACTION-LIST - ISPH2-RXN REACTION-LIST - RXN0-884 REACTION-LIST - RXN0-882 REACTION-LIST - RXN0-302 REACTION-LIST - DXPREDISOM-RXN REACTION-LIST - DXS-RXN SUPER-PATHWAYS - PWY-5121 SYNONYMS - nonmevalonate isopentenyl diphosphate biosynthesis SYNONYMS - methylerythritol phosphate degradation SYNONYMS - MEP degradation SYNONYMS - deoxyxylulose phosphate pathway SYNONYMS - DXP pathway SYNONYMS - Rohmer pathway SYNONYMS - isopentenyl diphosphate biosynthesis -- mevalonate-independent SYNONYMS - nonmevalonate isoprenoid pathway SYNONYMS - MEP pathway // UNIQUE-ID - PWY-5122 TYPES - Polyprenyl-Biosynthesis COMMON-NAME - geranyldiphosphate biosynthesis CITATIONS - :EV-COMP-AINF:3497824357:liya PATHWAY-LINKS - (DELTA3-ISOPENTENYL-PP NONMEVIPP-PWY) PATHWAY-LINKS - (GERANYL-PP PWY-5829) PREDECESSORS - (GPPSYN-RXN) PRIMARIES - (GPPSYN-RXN (DELTA3-ISOPENTENYL-PP) (GERANYL-PP)) REACTION-LAYOUT - (GPPSYN-RXN (:LEFT-PRIMARIES DELTA3-ISOPENTENYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GERANYL-PP)) REACTION-LIST - GPPSYN-RXN SYNONYMS - GPP biosynthesis // UNIQUE-ID - PWY-5805 TYPES - Polyprenyl-Biosynthesis COMMON-NAME - nonaprenyl diphosphate biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (SOLANESYL-PYROPHOSPHATE PWY-5871) PATHWAY-LINKS - (FARNESYL-PP PWY-5123) PREDECESSORS - (TRANS-OCTAPRENYLTRANSTRANSFERASE-RXN RXN-8992) PREDECESSORS - (RXN-8992 TRANS-HEXAPRENYLTRANSTRANSFERASE-RXN) PREDECESSORS - (TRANS-HEXAPRENYLTRANSTRANSFERASE-RXN TRANS-PENTAPRENYLTRANSFERASE-RXN) PREDECESSORS - (FARNESYLTRANSTRANSFERASE-RXN) PREDECESSORS - (TRANS-PENTAPRENYLTRANSFERASE-RXN RXN-8813) PREDECESSORS - (RXN-8813 FARNESYLTRANSTRANSFERASE-RXN) PRIMARIES - (FARNESYLTRANSTRANSFERASE-RXN (FARNESYL-PP) (GERANYLGERANYL-PP)) PRIMARIES - (FPPSYN-RXN (GERANYL-PP) (FARNESYL-PP)) PRIMARIES - (GPPSYN-RXN (CPD-4211) (GERANYL-PP)) PRIMARIES - (IPPISOM-RXN (DELTA3-ISOPENTENYL-PP) (CPD-2411)) REACTION-LAYOUT - (TRANS-OCTAPRENYLTRANSTRANSFERASE-RXN (:LEFT-PRIMARIES OCTAPRENYL-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SOLANESYL-PYROPHOSPHATE)) REACTION-LAYOUT - (RXN-8992 (:LEFT-PRIMARIES ALL-TRANS-HEPTAPRENYL-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OCTAPRENYL-DIPHOSPHATE)) REACTION-LAYOUT - (TRANS-HEXAPRENYLTRANSTRANSFERASE-RXN (:LEFT-PRIMARIES ALL-TRANS-HEXAPRENYL-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALL-TRANS-HEPTAPRENYL-DIPHOSPHATE)) REACTION-LAYOUT - (TRANS-PENTAPRENYLTRANSFERASE-RXN (:LEFT-PRIMARIES ALL-TRANS-PENTAPRENYL-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALL-TRANS-HEXAPRENYL-DIPHOSPHATE)) REACTION-LAYOUT - (RXN-8813 (:LEFT-PRIMARIES GERANYLGERANYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALL-TRANS-PENTAPRENYL-DIPHOSPHATE)) REACTION-LAYOUT - (FARNESYLTRANSTRANSFERASE-RXN (:LEFT-PRIMARIES FARNESYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GERANYLGERANYL-PP)) REACTION-LIST - TRANS-OCTAPRENYLTRANSTRANSFERASE-RXN REACTION-LIST - RXN-8992 REACTION-LIST - TRANS-HEXAPRENYLTRANSTRANSFERASE-RXN REACTION-LIST - TRANS-PENTAPRENYLTRANSFERASE-RXN REACTION-LIST - RXN-8813 REACTION-LIST - FARNESYLTRANSTRANSFERASE-RXN SYNONYMS - solanesyl diphosphate biosynthesis SYNONYMS - solanesyl pyrophosphate biosynthesis // UNIQUE-ID - PWY-5807 TYPES - Polyprenyl-Biosynthesis COMMON-NAME - heptaprenyl diphosphate biosynthesis CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (FARNESYL-PP PWY-5123) PREDECESSORS - (TRANS-HEXAPRENYLTRANSTRANSFERASE-RXN TRANS-PENTAPRENYLTRANSFERASE-RXN) PREDECESSORS - (FARNESYLTRANSTRANSFERASE-RXN) PREDECESSORS - (TRANS-PENTAPRENYLTRANSFERASE-RXN RXN-8813) PREDECESSORS - (RXN-8813 FARNESYLTRANSTRANSFERASE-RXN) PRIMARIES - (FARNESYLTRANSTRANSFERASE-RXN (FARNESYL-PP) (GERANYLGERANYL-PP)) PRIMARIES - (FPPSYN-RXN (GERANYL-PP) (FARNESYL-PP)) PRIMARIES - (GPPSYN-RXN (CPD-4211) (GERANYL-PP)) PRIMARIES - (IPPISOM-RXN (DELTA3-ISOPENTENYL-PP) (CPD-2411)) REACTION-LAYOUT - (TRANS-HEXAPRENYLTRANSTRANSFERASE-RXN (:LEFT-PRIMARIES ALL-TRANS-HEXAPRENYL-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALL-TRANS-HEPTAPRENYL-DIPHOSPHATE)) REACTION-LAYOUT - (TRANS-PENTAPRENYLTRANSFERASE-RXN (:LEFT-PRIMARIES ALL-TRANS-PENTAPRENYL-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALL-TRANS-HEXAPRENYL-DIPHOSPHATE)) REACTION-LAYOUT - (RXN-8813 (:LEFT-PRIMARIES GERANYLGERANYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALL-TRANS-PENTAPRENYL-DIPHOSPHATE)) REACTION-LAYOUT - (FARNESYLTRANSTRANSFERASE-RXN (:LEFT-PRIMARIES FARNESYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GERANYLGERANYL-PP)) REACTION-LIST - TRANS-HEXAPRENYLTRANSTRANSFERASE-RXN REACTION-LIST - TRANS-PENTAPRENYLTRANSFERASE-RXN REACTION-LIST - RXN-8813 REACTION-LIST - FARNESYLTRANSTRANSFERASE-RXN // UNIQUE-ID - PWY-5123 TYPES - All-Trans-Farnesyl-PP-Biosynthesis COMMON-NAME - trans,trans-farnesyl diphosphate biosynthesis CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |tissier| IN-PATHWAY - PWY-5121 IN-PATHWAY - PWY-5910 PATHWAY-LINKS - (FARNESYL-PP PWY-2541 PWY-5670) PATHWAY-LINKS - (DELTA3-ISOPENTENYL-PP PWY-922 NONMEVIPP-PWY) PREDECESSORS - (GPPSYN-RXN IPPISOM-RXN) PREDECESSORS - (FPPSYN-RXN GPPSYN-RXN) PRIMARIES - (GPPSYN-RXN (CPD-4211) (GERANYL-PP)) PRIMARIES - (FPPSYN-RXN (GERANYL-PP) (FARNESYL-PP)) REACTION-LAYOUT - (IPPISOM-RXN (:LEFT-PRIMARIES DELTA3-ISOPENTENYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-4211)) REACTION-LAYOUT - (FPPSYN-RXN (:LEFT-PRIMARIES DELTA3-ISOPENTENYL-PP GERANYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FARNESYL-PP)) REACTION-LAYOUT - (GPPSYN-RXN (:LEFT-PRIMARIES DELTA3-ISOPENTENYL-PP CPD-4211) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GERANYL-PP)) REACTION-LIST - IPPISOM-RXN REACTION-LIST - FPPSYN-RXN REACTION-LIST - GPPSYN-RXN SUPER-PATHWAYS - PWY-5121 SUPER-PATHWAYS - PWY-5910 SYNONYMS - FPP biosynthesis SYNONYMS - trans,trans-farnesyl diphosphate biosynthesis // UNIQUE-ID - PWY-5120 TYPES - GGPP-Biosynthesis COMMON-NAME - geranylgeranyldiphosphate biosynthesis CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - SRI CREDITS - |caspi| CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |tissier| IN-PATHWAY - PWY-5121 IN-PATHWAY - PWY-5910 PATHWAY-LINKS - (FARNESYL-PP PWY-5123) PATHWAY-LINKS - (GERANYLGERANYL-PP PWY-5032 PWY-5063) PREDECESSORS - (FARNESYLTRANSTRANSFERASE-RXN) PRIMARIES - (FARNESYLTRANSTRANSFERASE-RXN (FARNESYL-PP) (GERANYLGERANYL-PP)) REACTION-LAYOUT - (FARNESYLTRANSTRANSFERASE-RXN (:LEFT-PRIMARIES FARNESYL-PP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GERANYLGERANYL-PP)) REACTION-LIST - FARNESYLTRANSTRANSFERASE-RXN SUPER-PATHWAYS - PWY-5121 SUPER-PATHWAYS - PWY-5910 SYNONYMS - GGPP biosynthesis // UNIQUE-ID - PWY-5083 TYPES - NAD-Metabolism COMMON-NAME - NAD/NADH phosphorylation and dephosphorylation CITATIONS - :EV-COMP-AINF:3497824359:liya CREDITS - SRI CREDITS - |caspi| CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |hartmut| PATHWAY-LINKS - (NAD PYRIDNUCSYN-PWY) PREDECESSORS - (NADH-KINASE-RXN RXN-7703) PREDECESSORS - (RXN-7703 NADH-KINASE-RXN) PREDECESSORS - (RXN-7703 NADH-DEHYDROG-A-RXN) PREDECESSORS - (NADH-KINASE-RXN NADH-DEHYDROG-A-RXN) PREDECESSORS - (NADH-DEHYDROG-A-RXN NADPPHOSPHAT-RXN) PREDECESSORS - (NAD-KIN-RXN PYRNUTRANSHYDROGEN-RXN) PREDECESSORS - (NAD-KIN-RXN NADPPHOSPHAT-RXN) PREDECESSORS - (PYRNUTRANSHYDROGEN-RXN NADPPHOSPHAT-RXN) PREDECESSORS - (NADPPHOSPHAT-RXN PYRNUTRANSHYDROGEN-RXN) PREDECESSORS - (NADPPHOSPHAT-RXN NAD-KIN-RXN) PRIMARIES - (NADH-DEHYDROG-A-RXN (NAD) (NADH)) PRIMARIES - (RXN-7703 (NADPH) (NADH)) PRIMARIES - (NADH-KINASE-RXN (NADH) (NADPH)) PRIMARIES - (NAD-KIN-RXN (NAD) (NADP)) PRIMARIES - (NADPPHOSPHAT-RXN (NADP) (NAD)) PRIMARIES - (PYRNUTRANSHYDROGEN-RXN (NAD) (NADP)) REACTION-LAYOUT - (RXN-7703 (:LEFT-PRIMARIES NADPH) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NADH)) REACTION-LAYOUT - (NADH-KINASE-RXN (:LEFT-PRIMARIES NADH) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NADPH)) REACTION-LAYOUT - (NADH-DEHYDROG-A-RXN (:LEFT-PRIMARIES NADH) (:DIRECTION :R2L) (:RIGHT-PRIMARIES NAD)) REACTION-LAYOUT - (NAD-KIN-RXN (:LEFT-PRIMARIES NAD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NADP)) REACTION-LAYOUT - (NADPPHOSPHAT-RXN (:LEFT-PRIMARIES NADP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NAD)) REACTION-LAYOUT - (PYRNUTRANSHYDROGEN-RXN (:LEFT-PRIMARIES NADPH NAD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NADP NADH)) REACTION-LIST - RXN-7703 REACTION-LIST - NADH-KINASE-RXN REACTION-LIST - NADH-DEHYDROG-A-RXN REACTION-LIST - NAD-KIN-RXN REACTION-LIST - NADPPHOSPHAT-RXN REACTION-LIST - PYRNUTRANSHYDROGEN-RXN // UNIQUE-ID - PWY-5381 TYPES - NAD-Metabolism COMMON-NAME - pyridine nucleotide cycling (plants) CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |hartmut| PATHWAY-LINKS - (NICOTINATE_NUCLEOTIDE PYRIDNUCSYN-PWY) PREDECESSORS - (NADNUCLEOSID-RXN) PREDECESSORS - (NMNNUCLEOSID-RXN NADPYROPHOSPHAT-RXN) PREDECESSORS - (RXN-8441 RXN-5841) PREDECESSORS - (NADPYROPHOSPHAT-RXN RXN-5841) PREDECESSORS - (RXN-5841 NADPYROPHOSPHAT-RXN) PREDECESSORS - (NICOTINAMID-RXN NADNUCLEOSID-RXN) PREDECESSORS - (NICOTINAMID-RXN NMNNUCLEOSID-RXN) PREDECESSORS - (NICOTINAMID-RXN RXN-8441) PREDECESSORS - (RXN-8442 NICOTINAMID-RXN) PREDECESSORS - (RXN-8443 RXN-8442) PREDECESSORS - (NICOTINATEPRIBOSYLTRANS-RXN NICOTINAMID-RXN) PREDECESSORS - (NICONUCADENYLYLTRAN-RXN RXN-8443) PREDECESSORS - (NICONUCADENYLYLTRAN-RXN NICOTINATEPRIBOSYLTRANS-RXN) PREDECESSORS - (NAD-SYNTH-GLN-RXN NICONUCADENYLYLTRAN-RXN) PREDECESSORS - (NADPYROPHOSPHAT-RXN NAD-SYNTH-GLN-RXN) PREDECESSORS - (RXN-8444 NICOTINATEPRIBOSYLTRANS-RXN) PREDECESSORS - (RXN-8444 RXN-8443) PREDECESSORS - (RXN-8442 RXN-8444) PREDECESSORS - (NICOTINATEPRIBOSYLTRANS-RXN RXN-8444) PRIMARIES - (RXN-8444 (NICOTINATE_NUCLEOTIDE) (NIACINE)) PRIMARIES - (NAD-SYNTH-GLN-RXN (DEAMIDO-NAD) (NAD)) PRIMARIES - (NICONUCADENYLYLTRAN-RXN (NICOTINATE_NUCLEOTIDE) (DEAMIDO-NAD)) PRIMARIES - (NICOTINATEPRIBOSYLTRANS-RXN (NIACINE) (NICOTINATE_NUCLEOTIDE)) PRIMARIES - (RXN-8443 (CPD-8259) (NICOTINATE_NUCLEOTIDE)) PRIMARIES - (RXN-8442 (NIACINE) (CPD-8259)) PRIMARIES - (NICOTINAMID-RXN (NIACINAMIDE) (NIACINE)) PRIMARIES - (RXN-8441 (NICOTINAMIDE_RIBOSE) (NIACINAMIDE)) PRIMARIES - (RXN-5841 (NICOTINAMIDE_NUCLEOTIDE) (NICOTINAMIDE_RIBOSE)) PRIMARIES - (NMNNUCLEOSID-RXN (NICOTINAMIDE_NUCLEOTIDE) (NIACINAMIDE)) PRIMARIES - (NADNUCLEOSID-RXN (NAD) (NIACINAMIDE)) PRIMARIES - (NADPYROPHOSPHAT-RXN (NAD) (NICOTINAMIDE_NUCLEOTIDE)) REACTION-LAYOUT - (RXN-8444 (:LEFT-PRIMARIES NICOTINATE_NUCLEOTIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NIACINE)) REACTION-LAYOUT - (NAD-SYNTH-GLN-RXN (:LEFT-PRIMARIES DEAMIDO-NAD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NAD)) REACTION-LAYOUT - (NICONUCADENYLYLTRAN-RXN (:LEFT-PRIMARIES NICOTINATE_NUCLEOTIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DEAMIDO-NAD)) REACTION-LAYOUT - (NICOTINATEPRIBOSYLTRANS-RXN (:LEFT-PRIMARIES NICOTINATE_NUCLEOTIDE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES NIACINE)) REACTION-LAYOUT - (RXN-8443 (:LEFT-PRIMARIES CPD-8259) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NICOTINATE_NUCLEOTIDE)) REACTION-LAYOUT - (RXN-8442 (:LEFT-PRIMARIES NIACINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8259)) REACTION-LAYOUT - (NICOTINAMID-RXN (:LEFT-PRIMARIES NIACINAMIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NIACINE)) REACTION-LAYOUT - (RXN-8441 (:LEFT-PRIMARIES NICOTINAMIDE_RIBOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NIACINAMIDE)) REACTION-LAYOUT - (RXN-5841 (:LEFT-PRIMARIES NICOTINAMIDE_NUCLEOTIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NICOTINAMIDE_RIBOSE)) REACTION-LAYOUT - (NMNNUCLEOSID-RXN (:LEFT-PRIMARIES NICOTINAMIDE_NUCLEOTIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NIACINAMIDE)) REACTION-LAYOUT - (NADPYROPHOSPHAT-RXN (:LEFT-PRIMARIES NAD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NICOTINAMIDE_NUCLEOTIDE)) REACTION-LIST - RXN-8444 REACTION-LIST - NAD-SYNTH-GLN-RXN REACTION-LIST - NICONUCADENYLYLTRAN-RXN REACTION-LIST - NICOTINATEPRIBOSYLTRANS-RXN REACTION-LIST - RXN-8443 REACTION-LIST - RXN-8442 REACTION-LIST - NICOTINAMID-RXN REACTION-LIST - RXN-8441 REACTION-LIST - RXN-5841 REACTION-LIST - NMNNUCLEOSID-RXN REACTION-LIST - NADPYROPHOSPHAT-RXN // UNIQUE-ID - PYRIDNUCSYN-PWY TYPES - NAD-SYN COMMON-NAME - NAD biosynthesis I (from aspartate) CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |hartmut| CREDITS - SRI CREDITS - |caspi| CREDITS - O-18 CREDITS - |riley| PATHWAY-LINKS - (NICOTINATE_NUCLEOTIDE (PWY-5381 . :OUTGOING)) PATHWAY-LINKS - (NAD PWY-5083) PREDECESSORS - (NAD-SYNTH-GLN-RXN NICONUCADENYLYLTRAN-RXN) PREDECESSORS - (NAD-SYNTH-NH3-RXN NICONUCADENYLYLTRAN-RXN) PREDECESSORS - (NICONUCADENYLYLTRAN-RXN QUINOPRIBOTRANS-RXN) PREDECESSORS - (QUINOPRIBOTRANS-RXN QUINOLINATE-SYNTHA-RXN) PREDECESSORS - (QUINOLINATE-SYNTHA-RXN L-ASPARTATE-OXID-RXN) PREDECESSORS - (L-ASPARTATE-OXID-RXN) REACTION-LAYOUT - (L-ASPARTATE-OXID-RXN (:LEFT-PRIMARIES L-ASPARTATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES IMINOASPARTATE)) REACTION-LAYOUT - (QUINOLINATE-SYNTHA-RXN (:LEFT-PRIMARIES IMINOASPARTATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES QUINOLINATE)) REACTION-LAYOUT - (QUINOPRIBOTRANS-RXN (:LEFT-PRIMARIES QUINOLINATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NICOTINATE_NUCLEOTIDE)) REACTION-LAYOUT - (NAD-SYNTH-NH3-RXN (:LEFT-PRIMARIES DEAMIDO-NAD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NAD)) REACTION-LAYOUT - (NAD-SYNTH-GLN-RXN (:LEFT-PRIMARIES DEAMIDO-NAD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NAD)) REACTION-LAYOUT - (NICONUCADENYLYLTRAN-RXN (:LEFT-PRIMARIES NICOTINATE_NUCLEOTIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DEAMIDO-NAD)) REACTION-LIST - L-ASPARTATE-OXID-RXN REACTION-LIST - QUINOLINATE-SYNTHA-RXN REACTION-LIST - QUINOPRIBOTRANS-RXN REACTION-LIST - NAD-SYNTH-NH3-RXN REACTION-LIST - NAD-SYNTH-GLN-RXN REACTION-LIST - NICONUCADENYLYLTRAN-RXN SYNONYMS - nicotinamide adenine dinucleotide biosynthesis // UNIQUE-ID - PWY3O-4106 TYPES - NAD-SYN COMMON-NAME - NAD salvage pathway III CREDITS - SRI CREDITS - |caspi| CREDITS - O-16 CREDITS - |krieger| PREDECESSORS - (2.7.7.1-RXN RIBOSYLNICOTINAMIDE-KINASE-RXN) PRIMARIES - (NADPYROPHOSPHAT-RXN (NAD) (NICOTINAMIDE_NUCLEOTIDE)) REACTION-LAYOUT - (RIBOSYLNICOTINAMIDE-KINASE-RXN (:LEFT-PRIMARIES NICOTINAMIDE_RIBOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NICOTINAMIDE_NUCLEOTIDE)) REACTION-LAYOUT - (2.7.7.1-RXN (:LEFT-PRIMARIES NICOTINAMIDE_NUCLEOTIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NAD)) REACTION-LIST - RIBOSYLNICOTINAMIDE-KINASE-RXN REACTION-LIST - 2.7.7.1-RXN SYNONYMS - nicotinamide riboside salvage pathway SYNONYMS - nicotinamide adenine dinucleotide salvage // UNIQUE-ID - COA-PWY TYPES - CoA-Biosynthesis COMMON-NAME - coenzyme A biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - |keseler| CREDITS - SRI CREDITS - |arnaud| CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |hartmut| IN-PATHWAY - PWY-4242 IN-PATHWAY - PWY-4221 PATHWAY-LINKS - (PANTOTHENATE PANTO-PWY PWY-3961) PREDECESSORS - (P-PANTOCYSLIG-RXN PANTOTHENATE-KIN-RXN) PREDECESSORS - (P-PANTOCYSDECARB-RXN P-PANTOCYSLIG-RXN) PREDECESSORS - (PANTEPADENYLYLTRAN-RXN P-PANTOCYSDECARB-RXN) PREDECESSORS - (DEPHOSPHOCOAKIN-RXN PANTEPADENYLYLTRAN-RXN) REACTION-LAYOUT - (PANTOTHENATE-KIN-RXN (:LEFT-PRIMARIES PANTOTHENATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 4-P-PANTOTHENATE)) REACTION-LAYOUT - (P-PANTOCYSLIG-RXN (:LEFT-PRIMARIES 4-P-PANTOTHENATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES R-4-PHOSPHOPANTOTHENOYL-L-CYSTEINE)) REACTION-LAYOUT - (P-PANTOCYSDECARB-RXN (:LEFT-PRIMARIES R-4-PHOSPHOPANTOTHENOYL-L-CYSTEINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PANTETHEINE-P)) REACTION-LAYOUT - (DEPHOSPHOCOAKIN-RXN (:LEFT-PRIMARIES DEPHOSPHO-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CO-A)) REACTION-LAYOUT - (PANTEPADENYLYLTRAN-RXN (:LEFT-PRIMARIES PANTETHEINE-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DEPHOSPHO-COA)) REACTION-LIST - PANTOTHENATE-KIN-RXN REACTION-LIST - P-PANTOCYSLIG-RXN REACTION-LIST - P-PANTOCYSDECARB-RXN REACTION-LIST - DEPHOSPHOCOAKIN-RXN REACTION-LIST - PANTEPADENYLYLTRAN-RXN SUPER-PATHWAYS - PWY-4242 SUPER-PATHWAYS - PWY-4221 SYNONYMS - CoA biosynthesis // UNIQUE-ID - PWY-1422 TYPES - Vitamin-Biosynthesis TYPES - Quinone-Biosynthesis COMMON-NAME - vitamin E biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |zhang| PATHWAY-LINKS - (PHYTYL-PYROPHOSPHATE PWY-5063) PATHWAY-LINKS - (P-HYDROXY-PHENYLPYRUVATE PWY-5886) PREDECESSORS - (RXN-2562 RXN-2561) PREDECESSORS - (TOCOPHEROL-O-METHYLTRANSFERASE-RXN RXN-2543) PREDECESSORS - (RXN-2542 RXN-2541) PREDECESSORS - (RXN-2541 4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN) PREDECESSORS - (RXN-2543 RXN-2542) PREDECESSORS - (RXN-2561 RXN-2541) PRIMARIES - (RXN-2541 (PHYTYL-PYROPHOSPHATE HOMOGENTISATE) NIL) REACTION-LAYOUT - (RXN-2562 (:LEFT-PRIMARIES DELTA-TOCOPHEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES BETA-TOCOPHEROL)) REACTION-LAYOUT - (RXN-2561 (:LEFT-PRIMARIES MPBQ) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DELTA-TOCOPHEROL)) REACTION-LAYOUT - (TOCOPHEROL-O-METHYLTRANSFERASE-RXN (:LEFT-PRIMARIES GAMA-TOCOPHEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALPHA-TOCOPHEROL)) REACTION-LAYOUT - (RXN-2543 (:LEFT-PRIMARIES DMPBQ) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GAMA-TOCOPHEROL)) REACTION-LAYOUT - (RXN-2542 (:LEFT-PRIMARIES MPBQ) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DMPBQ)) REACTION-LAYOUT - (RXN-2541 (:LEFT-PRIMARIES PHYTYL-PYROPHOSPHATE HOMOGENTISATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MPBQ)) REACTION-LAYOUT - (4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN (:LEFT-PRIMARIES P-HYDROXY-PHENYLPYRUVATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HOMOGENTISATE)) REACTION-LIST - RXN-2562 REACTION-LIST - RXN-2561 REACTION-LIST - TOCOPHEROL-O-METHYLTRANSFERASE-RXN REACTION-LIST - RXN-2543 REACTION-LIST - RXN-2542 REACTION-LIST - RXN-2541 REACTION-LIST - 4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN SYNONYMS - tocopherol biosynthesis // UNIQUE-ID - PWY-5872 TYPES - Ubiquinone-Biosynthesis COMMON-NAME - ubiquinone-10 biosynthesis (eukaryotic) CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (|4-hydroxybenzoate| PWY-5754) PREDECESSORS - (RXN-9348 RXN-9237) PREDECESSORS - (RXN-9234 RXN-9285) PREDECESSORS - (RXN-9285 RXN-9282) PREDECESSORS - (RXN-9282 RXN-9279) PREDECESSORS - (RXN-9279 RXN-9230) PREDECESSORS - (RXN-9237 RXN-9236) PREDECESSORS - (RXN-9236 RXN-9235) PREDECESSORS - (RXN-9235 RXN-9234) REACTION-LAYOUT - (RXN-9348 (:LEFT-PRIMARIES CPD-9958) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UBIQUINONE-10)) REACTION-LAYOUT - (RXN-9285 (:LEFT-PRIMARIES CPD-9897) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9865)) REACTION-LAYOUT - (RXN-9282 (:LEFT-PRIMARIES CPD-9895) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9897)) REACTION-LAYOUT - (RXN-9279 (:LEFT-PRIMARIES CPD-9864) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9895)) REACTION-LAYOUT - (RXN-9230 (:LEFT-PRIMARIES |4-hydroxybenzoate|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9864)) REACTION-LAYOUT - (RXN-9237 (:LEFT-PRIMARIES CPD-9873) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9958)) REACTION-LAYOUT - (RXN-9236 (:LEFT-PRIMARIES CPD-9871) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9873)) REACTION-LAYOUT - (RXN-9235 (:LEFT-PRIMARIES CPD-9869) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9871)) REACTION-LAYOUT - (RXN-9234 (:LEFT-PRIMARIES CPD-9865) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9869)) REACTION-LIST - RXN-9348 REACTION-LIST - RXN-9285 REACTION-LIST - RXN-9282 REACTION-LIST - RXN-9279 REACTION-LIST - RXN-9230 REACTION-LIST - RXN-9237 REACTION-LIST - RXN-9236 REACTION-LIST - RXN-9235 REACTION-LIST - RXN-9234 SYNONYMS - Q10 biosynthesis // UNIQUE-ID - PWY-5871 TYPES - Ubiquinone-Biosynthesis COMMON-NAME - ubiquinone-9 biosynthesis (eukaryotic) CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (SOLANESYL-PYROPHOSPHATE PWY-5805) PATHWAY-LINKS - (|4-hydroxybenzoate| PWY-5754) PREDECESSORS - (RXN-9347 2.1.1.64-RXN) PREDECESSORS - (RXN-9241 RXN-9284) PREDECESSORS - (RXN-9284 RXN-9281) PREDECESSORS - (RXN-9281 RXN-9278) PREDECESSORS - (RXN-9278 2.5.1.39-RXN) PREDECESSORS - (2.1.1.64-RXN RXN-9243) PREDECESSORS - (RXN-9243 RXN-9242) PREDECESSORS - (RXN-9242 RXN-9241) REACTION-LAYOUT - (RXN-9347 (:LEFT-PRIMARIES CPD-9957) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UBIQUINONE-9)) REACTION-LAYOUT - (RXN-9284 (:LEFT-PRIMARIES CPD-9898) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9866)) REACTION-LAYOUT - (RXN-9281 (:LEFT-PRIMARIES CPD-9896) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9898)) REACTION-LAYOUT - (RXN-9278 (:LEFT-PRIMARIES NONAPRENYL-4-HYDROXYBENZOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9896)) REACTION-LAYOUT - (RXN-9243 (:LEFT-PRIMARIES CPD-9872) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7158)) REACTION-LAYOUT - (RXN-9242 (:LEFT-PRIMARIES CPD-9870) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9872)) REACTION-LAYOUT - (2.1.1.64-RXN (:LEFT-PRIMARIES CPD-7158) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9957)) REACTION-LAYOUT - (RXN-9241 (:LEFT-PRIMARIES CPD-9866) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9870)) REACTION-LAYOUT - (2.5.1.39-RXN (:LEFT-PRIMARIES |4-hydroxybenzoate| SOLANESYL-PYROPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NONAPRENYL-4-HYDROXYBENZOATE)) REACTION-LIST - RXN-9347 REACTION-LIST - RXN-9284 REACTION-LIST - RXN-9281 REACTION-LIST - RXN-9278 REACTION-LIST - RXN-9243 REACTION-LIST - RXN-9242 REACTION-LIST - 2.1.1.64-RXN REACTION-LIST - RXN-9241 REACTION-LIST - 2.5.1.39-RXN SYNONYMS - Q9 biosynthesis // UNIQUE-ID - GLUTATHIONESYN-PWY TYPES - Reductants COMMON-NAME - glutathione biosynthesis CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |hartmut| IN-PATHWAY - PWY-4041 PREDECESSORS - (GLUTCYSLIG-RXN) PREDECESSORS - (GLUTATHIONE-SYN-RXN GLUTCYSLIG-RXN) REACTION-LAYOUT - (GLUTATHIONE-SYN-RXN (:LEFT-PRIMARIES L-GAMMA-GLUTAMYLCYSTEINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLUTATHIONE)) REACTION-LAYOUT - (GLUTCYSLIG-RXN (:LEFT-PRIMARIES GLT CYS) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-GAMMA-GLUTAMYLCYSTEINE)) REACTION-LIST - GLUTATHIONE-SYN-RXN REACTION-LIST - GLUTCYSLIG-RXN SUPER-PATHWAYS - PWY-4041 // UNIQUE-ID - PWY-4081 TYPES - Reductants COMMON-NAME - glutathione redox reactions I CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - SRI CREDITS - |caspi| PREDECESSORS - (GLUTATHIONE-REDUCT-NADPH-RXN GLUTATHIONE-PEROXIDASE-RXN) PREDECESSORS - (GLUTATHIONE-REDUCT-NADPH-RXN 1.11.1.12-RXN) PREDECESSORS - (GLUTATHIONE-PEROXIDASE-RXN GLUTATHIONE-REDUCT-NADPH-RXN) PREDECESSORS - (1.11.1.12-RXN GLUTATHIONE-REDUCT-NADPH-RXN) PRIMARIES - (GLUTATHIONE-REDUCT-NADPH-RXN (OXIDIZED-GLUTATHIONE) (GLUTATHIONE)) PRIMARIES - (GLUTATHIONE-PEROXIDASE-RXN (GLUTATHIONE) (OXIDIZED-GLUTATHIONE)) PRIMARIES - (1.11.1.12-RXN (GLUTATHIONE) (OXIDIZED-GLUTATHIONE)) REACTION-LAYOUT - (GLUTATHIONE-REDUCT-NADPH-RXN (:LEFT-PRIMARIES GLUTATHIONE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES OXIDIZED-GLUTATHIONE)) REACTION-LAYOUT - (1.11.1.12-RXN (:LEFT-PRIMARIES GLUTATHIONE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OXIDIZED-GLUTATHIONE)) REACTION-LAYOUT - (GLUTATHIONE-PEROXIDASE-RXN (:LEFT-PRIMARIES GLUTATHIONE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OXIDIZED-GLUTATHIONE)) REACTION-LIST - GLUTATHIONE-REDUCT-NADPH-RXN REACTION-LIST - 1.11.1.12-RXN REACTION-LIST - GLUTATHIONE-PEROXIDASE-RXN // UNIQUE-ID - THIOREDOX-PWY TYPES - Reductants COMMON-NAME - thioredoxin pathway CITATIONS - :EV-COMP-AINF:3497824359:liya CREDITS - O-18 CREDITS - |riley| PREDECESSORS - (THIOREDOXIN-REDUCT-NADPH-RXN THIOREDOXIN-RXN) PREDECESSORS - (THIOREDOXIN-RXN THIOREDOXIN-REDUCT-NADPH-RXN) PRIMARIES - (THIOREDOXIN-REDUCT-NADPH-RXN (|Red-Thioredoxin|) (|Ox-Thioredoxin|)) REACTION-LAYOUT - (THIOREDOXIN-RXN (:LEFT-PRIMARIES |Ox-Thioredoxin|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Red-Thioredoxin|)) REACTION-LAYOUT - (THIOREDOXIN-REDUCT-NADPH-RXN (:LEFT-PRIMARIES |Red-Thioredoxin|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Ox-Thioredoxin|)) REACTION-LIST - THIOREDOXIN-RXN REACTION-LIST - THIOREDOXIN-REDUCT-NADPH-RXN // UNIQUE-ID - GLUT-REDOX-PWY TYPES - Reductants COMMON-NAME - glutathione redox reactions II CITATIONS - :EV-COMP-AINF:3497824359:liya CREDITS - SRI CREDITS - |caspi| CREDITS - O-18 CREDITS - |riley| PREDECESSORS - (GLUTATHIONE-REDUCT-NADPH-RXN PRODISULFREDUCT-A-RXN) PREDECESSORS - (PRODISULFREDUCT-A-RXN GLUTATHIONE-REDUCT-NADPH-RXN) PRIMARIES - (PRODISULFREDUCT-A-RXN (GLUTATHIONE) (OXIDIZED-GLUTATHIONE)) PRIMARIES - (GLUTATHIONE-REDUCT-NADPH-RXN (OXIDIZED-GLUTATHIONE) (GLUTATHIONE)) REACTION-LAYOUT - (GLUTATHIONE-REDUCT-NADPH-RXN (:LEFT-PRIMARIES GLUTATHIONE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES OXIDIZED-GLUTATHIONE)) REACTION-LAYOUT - (PRODISULFREDUCT-A-RXN (:LEFT-PRIMARIES GLUTATHIONE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OXIDIZED-GLUTATHIONE)) REACTION-LIST - GLUTATHIONE-REDUCT-NADPH-RXN REACTION-LIST - PRODISULFREDUCT-A-RXN // UNIQUE-ID - PWY0-501 TYPES - Lipoate-Biosynthesis COMMON-NAME - lipoate biosynthesis and incorporation I CITATIONS - :EV-COMP-AINF:3497824359:liya CREDITS - |caspi| CREDITS - SRI CREDITS - |arnaud| PREDECESSORS - (RXN0-947 RXN-5741) PREDECESSORS - (RXN0-949 RXN0-947) PRIMARIES - (RXN0-949 (|Octanoylated-domains|) (|Lipoylated-domains|)) PRIMARIES - (RXN-5741 (CPD-195) (OCTANOYL-ACP)) REACTION-LAYOUT - (RXN-5741 (:LEFT-PRIMARIES CPD-195) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Octanoyl-ACPs|)) REACTION-LAYOUT - (RXN0-947 (:LEFT-PRIMARIES |Octanoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Octanoylated-domains|)) REACTION-LAYOUT - (RXN0-949 (:LEFT-PRIMARIES |Octanoylated-domains|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Lipoylated-domains|)) REACTION-LIST - RXN-5741 REACTION-LIST - RXN0-947 REACTION-LIST - RXN0-949 // UNIQUE-ID - PWY-3701 TYPES - BIOTIN-SYN COMMON-NAME - biotin biosynthesis II CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |hartmut| PREDECESSORS - (RXN-5985 RXN-5984) PREDECESSORS - (RXN-5984 DETHIOBIOTIN-SYN-RXN) PREDECESSORS - (DETHIOBIOTIN-SYN-RXN DAPASYN-RXN) PREDECESSORS - (DAPASYN-RXN 7KAPSYN-RXN) PRIMARIES - (RXN-5985 (CPD-5662) (BIOTIN)) PRIMARIES - (RXN-5984 (DETHIOBIOTIN) (CPD-5662)) PRIMARIES - (DETHIOBIOTIN-SYN-RXN (DIAMINONONANOATE) (DETHIOBIOTIN)) PRIMARIES - (DAPASYN-RXN (8-AMINO-7-OXONONANOATE) (DIAMINONONANOATE)) REACTION-LAYOUT - (RXN-5985 (:LEFT-PRIMARIES CPD-5662) (:DIRECTION :L2R) (:RIGHT-PRIMARIES BIOTIN)) REACTION-LAYOUT - (RXN-5984 (:LEFT-PRIMARIES DETHIOBIOTIN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-5662)) REACTION-LAYOUT - (DETHIOBIOTIN-SYN-RXN (:LEFT-PRIMARIES DIAMINONONANOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DETHIOBIOTIN)) REACTION-LAYOUT - (DAPASYN-RXN (:LEFT-PRIMARIES 8-AMINO-7-OXONONANOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIAMINONONANOATE)) REACTION-LAYOUT - (7KAPSYN-RXN (:LEFT-PRIMARIES L-ALPHA-ALANINE CPD-558) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 8-AMINO-7-OXONONANOATE)) REACTION-LIST - RXN-5985 REACTION-LIST - RXN-5984 REACTION-LIST - DETHIOBIOTIN-SYN-RXN REACTION-LIST - DAPASYN-RXN REACTION-LIST - 7KAPSYN-RXN SYNONYMS - vitamin H biosynthesis // UNIQUE-ID - PYRIDOXSYN-PWY TYPES - Vitamin-B6-Biosynthesis COMMON-NAME - pyridoxal 5'-phosphate biosynthesis CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - O-18 CREDITS - |riley| IN-PATHWAY - PWY0-845 PREDECESSORS - (PDXJ-RXN RXN-8447) PREDECESSORS - (RXN-8447 1.1.1.262-RXN) PREDECESSORS - (1.1.1.262-RXN PSERTRANSAMPYR-RXN) PREDECESSORS - (PNPOXI-RXN PDXJ-RXN) PREDECESSORS - (ERYTH4PDEHYDROG-RXN) PREDECESSORS - (ERYTHRON4PDEHYDROG-RXN ERYTH4PDEHYDROG-RXN) PREDECESSORS - (PSERTRANSAMPYR-RXN ERYTHRON4PDEHYDROG-RXN) PREDECESSORS - (PDXJ-RXN DXS-RXN) PRIMARIES - (PDXJ-RXN (DEOXYXYLULOSE-5P 1-AMINO-PROPAN-2-ONE-3-PHOSPHATE) NIL) PRIMARIES - (RXN-8447 (2-AMINO-3-OXO-4-PHOSPHONOOXYBUTYRATE) (1-AMINO-PROPAN-2-ONE-3-PHOSPHATE)) PRIMARIES - (PNPOXI-RXN (PYRIDOXINE-5P) (PYRIDOXAL_PHOSPHATE)) REACTION-LAYOUT - (RXN-8447 (:LEFT-PRIMARIES 2-AMINO-3-OXO-4-PHOSPHONOOXYBUTYRATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 1-AMINO-PROPAN-2-ONE-3-PHOSPHATE)) REACTION-LAYOUT - (1.1.1.262-RXN (:LEFT-PRIMARIES 4-PHOSPHONOOXY-THREONINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-AMINO-3-OXO-4-PHOSPHONOOXYBUTYRATE)) REACTION-LAYOUT - (PSERTRANSAMPYR-RXN (:LEFT-PRIMARIES 3OH-4P-OH-ALPHA-KETOBUTYRATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 4-PHOSPHONOOXY-THREONINE)) REACTION-LAYOUT - (ERYTHRON4PDEHYDROG-RXN (:LEFT-PRIMARIES ERYTHRONATE-4P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3OH-4P-OH-ALPHA-KETOBUTYRATE)) REACTION-LAYOUT - (PDXJ-RXN (:LEFT-PRIMARIES 1-AMINO-PROPAN-2-ONE-3-PHOSPHATE DEOXYXYLULOSE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PYRIDOXINE-5P)) REACTION-LAYOUT - (DXS-RXN (:LEFT-PRIMARIES GAP PYRUVATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DEOXYXYLULOSE-5P)) REACTION-LAYOUT - (ERYTH4PDEHYDROG-RXN (:LEFT-PRIMARIES ERYTHROSE-4P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ERYTHRONATE-4P)) REACTION-LAYOUT - (PNPOXI-RXN (:LEFT-PRIMARIES PYRIDOXINE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PYRIDOXAL_PHOSPHATE)) REACTION-LIST - RXN-8447 REACTION-LIST - 1.1.1.262-RXN REACTION-LIST - PSERTRANSAMPYR-RXN REACTION-LIST - ERYTHRON4PDEHYDROG-RXN REACTION-LIST - PDXJ-RXN REACTION-LIST - DXS-RXN REACTION-LIST - ERYTH4PDEHYDROG-RXN REACTION-LIST - PNPOXI-RXN SUPER-PATHWAYS - PWY0-845 SYNONYMS - vitamin B6 biosynthesis // UNIQUE-ID - PLPSAL-PWY TYPES - Vitamin-B6-Biosynthesis COMMON-NAME - pyridoxal 5'-phosphate salvage pathway CITATIONS - :EV-COMP-AINF:3497824358:liya IN-PATHWAY - PWY0-845 PREDECESSORS - (PYRIDOXKIN-RXN) PREDECESSORS - (PMPOXI-RXN PYRAMKIN-RXN) PREDECESSORS - (PNPOXI-RXN PNKIN-RXN) REACTION-LAYOUT - (PYRIDOXKIN-RXN (:LEFT-PRIMARIES PYRIDOXAL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PYRIDOXAL_PHOSPHATE)) REACTION-LAYOUT - (PMPOXI-RXN (:LEFT-PRIMARIES PYRIDOXAMINE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PYRIDOXAL_PHOSPHATE)) REACTION-LAYOUT - (PNPOXI-RXN (:LEFT-PRIMARIES PYRIDOXINE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PYRIDOXAL_PHOSPHATE)) REACTION-LAYOUT - (PYRAMKIN-RXN (:LEFT-PRIMARIES PYRIDOXAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PYRIDOXAMINE-5P)) REACTION-LAYOUT - (PNKIN-RXN (:LEFT-PRIMARIES PYRIDOXINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PYRIDOXINE-5P)) REACTION-LIST - PYRIDOXKIN-RXN REACTION-LIST - PMPOXI-RXN REACTION-LIST - PNPOXI-RXN REACTION-LIST - PYRAMKIN-RXN REACTION-LIST - PNKIN-RXN SUPER-PATHWAYS - PWY0-845 SYNONYMS - vitamin B6 salvage // UNIQUE-ID - PWY-3961 TYPES - Pantothenate-Biosynthesis COMMON-NAME - pantothenate biosynthesis II CITATIONS - :EV-COMP-AINF:3497824358:liya IN-PATHWAY - PWY-4242 PATHWAY-LINKS - (PANTOTHENATE COA-PWY) PATHWAY-LINKS - (B-ALANINE PWY-3982 PWY-3981 PWY-3941) PREDECESSORS - (RXN-6401 1.1.1.168-RXN) PREDECESSORS - (1.1.1.168-RXN) PRIMARIES - (RXN-6401 (PANTOYL-LACTONE B-ALANINE) (PANTOTHENATE)) PRIMARIES - (1.1.1.168-RXN (2-DEHYDROPANTOYL-LACTONE) (PANTOYL-LACTONE)) REACTION-LAYOUT - (RXN-6401 (:LEFT-PRIMARIES B-ALANINE PANTOYL-LACTONE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PANTOTHENATE)) REACTION-LAYOUT - (1.1.1.168-RXN (:LEFT-PRIMARIES PANTOYL-LACTONE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 2-DEHYDROPANTOYL-LACTONE)) REACTION-LIST - RXN-6401 REACTION-LIST - 1.1.1.168-RXN SUPER-PATHWAYS - PWY-4242 SYNONYMS - vitamin B5 biosynthesis // UNIQUE-ID - PANTO-PWY TYPES - Pantothenate-Biosynthesis COMMON-NAME - pantothenate biosynthesis I CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - |keseler| CREDITS - SRI CREDITS - |arnaud| IN-PATHWAY - PWY-4221 PATHWAY-LINKS - (VAL VALSYN-PWY) PATHWAY-LINKS - (PANTOTHENATE COA-PWY) PATHWAY-LINKS - (B-ALANINE (|Beta-Alanine-Biosynthesis| . :INCOMING)) PREDECESSORS - (PANTOATE-BETA-ALANINE-LIG-RXN 2-DEHYDROPANTOATE-REDUCT-RXN) PREDECESSORS - (2-DEHYDROPANTOATE-REDUCT-RXN 3-CH3-2-OXOBUTANOATE-OH-CH3-XFER-RXN) PRIMARIES - (PANTOATE-BETA-ALANINE-LIG-RXN (B-ALANINE L-PANTOATE) NIL) REACTION-LAYOUT - (3-CH3-2-OXOBUTANOATE-OH-CH3-XFER-RXN (:LEFT-PRIMARIES 2-KETO-ISOVALERATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-DEHYDROPANTOATE)) REACTION-LAYOUT - (2-DEHYDROPANTOATE-REDUCT-RXN (:LEFT-PRIMARIES L-PANTOATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 2-DEHYDROPANTOATE)) REACTION-LAYOUT - (PANTOATE-BETA-ALANINE-LIG-RXN (:LEFT-PRIMARIES L-PANTOATE B-ALANINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PANTOTHENATE)) REACTION-LIST - 3-CH3-2-OXOBUTANOATE-OH-CH3-XFER-RXN REACTION-LIST - 2-DEHYDROPANTOATE-REDUCT-RXN REACTION-LIST - PANTOATE-BETA-ALANINE-LIG-RXN SUPER-PATHWAYS - PWY-4221 SYNONYMS - vitamin B5 biosynthesis // UNIQUE-ID - PWY-882 TYPES - Ascorbate-Biosynthesis COMMON-NAME - ascorbate biosynthesis I (L-galactose pathway) CITATIONS - :EV-COMP-AINF:3497824356:liya PREDECESSORS - (RXNQT-4141 RXN-1882) PREDECESSORS - (RXN-1882 2.7.7.13-RXN) PREDECESSORS - (2.7.7.13-RXN PHOSMANMUT-RXN) PREDECESSORS - (PHOSMANMUT-RXN MANNPISOM-RXN) PREDECESSORS - (RXNQT-4142 RXNQT-4141) PREDECESSORS - (GALACTONOLACTONE-DEHYDROGENASE-RXN RXN-1884) PREDECESSORS - (RXN-1884 RXNQT-4142) PRIMARIES - (MANNPISOM-RXN (FRUCTOSE-6P) (MANNOSE-6P)) PRIMARIES - (2.7.7.13-RXN (MANNOSE-1P) (GDP-MANNOSE)) PRIMARIES - (RXNQT-4141 (GDP-L-GALACTOSE) (CPDQT-4)) PRIMARIES - (RXN-7772 (CPD-7078) (GDP-L-GALACTOSE)) PRIMARIES - (RXN-7771 (GDP-MANNOSE) (CPD-7078)) PRIMARIES - (RXN-1884 (L-GALACTOSE) (CPD-330)) PRIMARIES - (RXN-1883 (GDP-L-GALACTOSE) (L-GALACTOSE)) PRIMARIES - (GALACTONOLACTONE-DEHYDROGENASE-RXN (CPD-330) (ASCORBATE)) PRIMARIES - (RXN-1882 (GDP-MANNOSE) (GDP-L-GALACTOSE)) PRIMARIES - (RXN-1881 (MANNOSE-1P) (GDP-MANNOSE)) PRIMARIES - (PHOSMANMUT-RXN (MANNOSE-6P) (MANNOSE-1P)) PRIMARIES - (PGLUCISOM-RXN (GLC-6-P) (FRUCTOSE-6P)) REACTION-LAYOUT - (RXN-1882 (:LEFT-PRIMARIES GDP-MANNOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GDP-L-GALACTOSE)) REACTION-LAYOUT - (2.7.7.13-RXN (:LEFT-PRIMARIES MANNOSE-1P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GDP-MANNOSE)) REACTION-LAYOUT - (PHOSMANMUT-RXN (:LEFT-PRIMARIES MANNOSE-1P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES MANNOSE-6P)) REACTION-LAYOUT - (MANNPISOM-RXN (:LEFT-PRIMARIES MANNOSE-6P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES FRUCTOSE-6P)) REACTION-LAYOUT - (RXNQT-4141 (:LEFT-PRIMARIES GDP-L-GALACTOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPDQT-4)) REACTION-LAYOUT - (RXNQT-4142 (:LEFT-PRIMARIES CPDQT-4) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-GALACTOSE)) REACTION-LAYOUT - (RXN-1884 (:LEFT-PRIMARIES L-GALACTOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-330)) REACTION-LAYOUT - (GALACTONOLACTONE-DEHYDROGENASE-RXN (:LEFT-PRIMARIES CPD-330) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ASCORBATE)) REACTION-LIST - RXN-1882 REACTION-LIST - 2.7.7.13-RXN REACTION-LIST - PHOSMANMUT-RXN REACTION-LIST - MANNPISOM-RXN REACTION-LIST - RXNQT-4141 REACTION-LIST - RXNQT-4142 REACTION-LIST - RXN-1884 REACTION-LIST - GALACTONOLACTONE-DEHYDROGENASE-RXN SYNONYMS - vitamin C biosynthesis SYNONYMS - ascorbic acid biosynthesis SYNONYMS - L-ascorbate biosynthesis // UNIQUE-ID - PWY-6168 TYPES - Flavin-Biosynthesis COMMON-NAME - flavin biosynthesis III (eukaryotes) CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - SRI CREDITS - |caspi| PREDECESSORS - (LUMAZINESYN-RXN DIOHBUTANONEPSYN-RXN) PREDECESSORS - (FADSYN-RXN RIBOFLAVINKIN-RXN) PREDECESSORS - (RIBOFLAVINKIN-RXN RIBOFLAVIN-SYN-RXN) PREDECESSORS - (RIBOFLAVIN-SYN-RXN LUMAZINESYN-RXN) PREDECESSORS - (LUMAZINESYN-RXN RIBOPHOSPHAT-RXN) PREDECESSORS - (RXN-10057 GTP-CYCLOHYDRO-II-RXN) PREDECESSORS - (RIBOPHOSPHAT-RXN RXN-10058) PREDECESSORS - (RXN-10058 RXN-10057) REACTION-LAYOUT - (DIOHBUTANONEPSYN-RXN (:LEFT-PRIMARIES RIBULOSE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROXY-BUTANONE-P)) REACTION-LAYOUT - (FADSYN-RXN (:LEFT-PRIMARIES FMN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FAD)) REACTION-LAYOUT - (RIBOFLAVINKIN-RXN (:LEFT-PRIMARIES RIBOFLAVIN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FMN)) REACTION-LAYOUT - (RIBOFLAVIN-SYN-RXN (:LEFT-PRIMARIES DIMETHYL-D-RIBITYL-LUMAZINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES RIBOFLAVIN AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE)) REACTION-LAYOUT - (LUMAZINESYN-RXN (:LEFT-PRIMARIES DIHYDROXY-BUTANONE-P AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIMETHYL-D-RIBITYL-LUMAZINE)) REACTION-LAYOUT - (GTP-CYCLOHYDRO-II-RXN (:LEFT-PRIMARIES GTP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR)) REACTION-LAYOUT - (RXN-10057 (:LEFT-PRIMARIES DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-10809)) REACTION-LAYOUT - (RXN-10058 (:LEFT-PRIMARIES CPD-10809) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-1086)) REACTION-LAYOUT - (RIBOPHOSPHAT-RXN (:LEFT-PRIMARIES CPD-1086) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE)) REACTION-LIST - DIOHBUTANONEPSYN-RXN REACTION-LIST - FADSYN-RXN REACTION-LIST - RIBOFLAVINKIN-RXN REACTION-LIST - RIBOFLAVIN-SYN-RXN REACTION-LIST - LUMAZINESYN-RXN REACTION-LIST - GTP-CYCLOHYDRO-II-RXN REACTION-LIST - RXN-10057 REACTION-LIST - RXN-10058 REACTION-LIST - RIBOPHOSPHAT-RXN // UNIQUE-ID - PWY-2161B TYPES - Folate-Biosynthesis COMMON-NAME - folate polyglutamylation II CITATIONS - :EV-COMP-AINF:3497824359:liya CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (10-FORMYL-THF PWY-2201) PATHWAY-LINKS - (THF FOLSYN-PWY) PREDECESSORS - (RXN-3742 RXN-3741) PREDECESSORS - (RXN-3741 RXN-3742) PRIMARIES - (RXN-3741 (|Folatepolyglutamate-n| |Folatepolyglutamate-n|) (|Folatepolyglutamate-n|)) PRIMARIES - (RXN-3742 (|Folatepolyglutamate-n|) (|Folatepolyglutamate-n| |Folatepolyglutamate-n|)) REACTION-LAYOUT - (RXN-3742 (:LEFT-PRIMARIES |Folatepolyglutamate-n|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Folatepolyglutamate-n|)) REACTION-LAYOUT - (RXN-3741 (:LEFT-PRIMARIES |Folatepolyglutamate-n|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Folatepolyglutamate-n|)) REACTION-LIST - RXN-3742 REACTION-LIST - RXN-3741 // UNIQUE-ID - PWY-2201 TYPES - Folate-Biosynthesis COMMON-NAME - folate transformations CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (THF FOLSYN-PWY) PREDECESSORS - (HOMOCYSMETB12-RXN RXN-5061) PREDECESSORS - (2.1.1.19-RXN RXN-5061) PREDECESSORS - (RXN-5061 GLYOHMETRANS-RXN) PREDECESSORS - (HOMOCYSMETB12-RXN 1.5.1.20-RXN) PREDECESSORS - (1.5.1.20-RXN GCVMULTI-RXN) PREDECESSORS - (GCVMULTI-RXN 2.1.1.19-RXN) PREDECESSORS - (2.1.1.19-RXN 1.5.1.20-RXN) PREDECESSORS - (1.5.1.20-RXN GLYOHMETRANS-RXN) PREDECESSORS - (5-FORMYL-THF-CYCLO-LIGASE-RXN 1.5.1.15-RXN) PREDECESSORS - (1.5.1.15-RXN GLYOHMETRANS-RXN) PREDECESSORS - (5-FORMYL-THF-CYCLO-LIGASE-RXN METHYLENETHFDEHYDROG-NADP-RXN) PREDECESSORS - (METHYLENETHFDEHYDROG-NADP-RXN GLYOHMETRANS-RXN) PREDECESSORS - (GLYOHMETRANS-RXN 2.1.1.19-RXN) PREDECESSORS - (5-FORMYL-THF-CYCLO-LIGASE-RXN METHENYLTHFCYCLOHYDRO-RXN) PREDECESSORS - (METHENYLTHFCYCLOHYDRO-RXN FORMATETHFLIG-RXN) PREDECESSORS - (FORMATETHFLIG-RXN 2.1.1.19-RXN) PREDECESSORS - (FORMYLTHFDEFORMYL-RXN FORMATETHFLIG-RXN) PREDECESSORS - (GLYOHMETRANS-RXN FORMYLTHFDEFORMYL-RXN) PREDECESSORS - (FORMATETHFLIG-RXN HOMOCYSMETB12-RXN) PRIMARIES - (RXN-5061 (METHYLENE-THF) (5-METHYL-THF)) PRIMARIES - (METHYLENETHFDEHYDROG-NADP-RXN (METHYLENE-THF) (5-10-METHENYL-THF)) PRIMARIES - (METHENYLTHFCYCLOHYDRO-RXN (10-FORMYL-THF) (5-10-METHENYL-THF)) PRIMARIES - (HOMOCYSMETB12-RXN (5-METHYL-THF) (THF)) PRIMARIES - (GLYOHMETRANS-RXN (THF) (METHYLENE-THF)) PRIMARIES - (FORMYLTHFDEFORMYL-RXN (10-FORMYL-THF) (THF)) PRIMARIES - (FORMATETHFLIG-RXN (THF) (10-FORMYL-THF)) PRIMARIES - (5-FORMYL-THF-CYCLO-LIGASE-RXN (5-10-METHENYL-THF) (5-FORMYL-THF)) PRIMARIES - (2.1.1.19-RXN (5-METHYL-THF) (THF)) PRIMARIES - (1.5.1.20-RXN (METHYLENE-THF) (5-METHYL-THF)) PRIMARIES - (1.5.1.15-RXN (METHYLENE-THF) (5-10-METHENYL-THF)) REACTION-LAYOUT - (RXN-5061 (:LEFT-PRIMARIES 5-METHYL-THF) (:DIRECTION :R2L) (:RIGHT-PRIMARIES METHYLENE-THF)) REACTION-LAYOUT - (5-FORMYL-THF-CYCLO-LIGASE-RXN (:LEFT-PRIMARIES 5-FORMYL-THF) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 5-10-METHENYL-THF)) REACTION-LAYOUT - (1.5.1.15-RXN (:LEFT-PRIMARIES METHYLENE-THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-10-METHENYL-THF)) REACTION-LAYOUT - (1.5.1.20-RXN (:LEFT-PRIMARIES 5-METHYL-THF) (:DIRECTION :R2L) (:RIGHT-PRIMARIES METHYLENE-THF)) REACTION-LAYOUT - (2.1.1.19-RXN (:LEFT-PRIMARIES THF) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 5-METHYL-THF)) REACTION-LAYOUT - (HOMOCYSMETB12-RXN (:LEFT-PRIMARIES 5-METHYL-THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES THF)) REACTION-LAYOUT - (GCVMULTI-RXN (:LEFT-PRIMARIES THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES METHYLENE-THF)) REACTION-LAYOUT - (METHYLENETHFDEHYDROG-NADP-RXN (:LEFT-PRIMARIES METHYLENE-THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-10-METHENYL-THF)) REACTION-LAYOUT - (GLYOHMETRANS-RXN (:LEFT-PRIMARIES THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES METHYLENE-THF)) REACTION-LAYOUT - (FORMYLTHFDEFORMYL-RXN (:LEFT-PRIMARIES 10-FORMYL-THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES THF)) REACTION-LAYOUT - (METHENYLTHFCYCLOHYDRO-RXN (:LEFT-PRIMARIES 5-10-METHENYL-THF) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 10-FORMYL-THF)) REACTION-LAYOUT - (FORMATETHFLIG-RXN (:LEFT-PRIMARIES THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 10-FORMYL-THF)) REACTION-LIST - RXN-5061 REACTION-LIST - 5-FORMYL-THF-CYCLO-LIGASE-RXN REACTION-LIST - 1.5.1.15-RXN REACTION-LIST - 1.5.1.20-RXN REACTION-LIST - 2.1.1.19-RXN REACTION-LIST - HOMOCYSMETB12-RXN REACTION-LIST - GCVMULTI-RXN REACTION-LIST - METHYLENETHFDEHYDROG-NADP-RXN REACTION-LIST - GLYOHMETRANS-RXN REACTION-LIST - FORMYLTHFDEFORMYL-RXN REACTION-LIST - METHENYLTHFCYCLOHYDRO-RXN REACTION-LIST - FORMATETHFLIG-RXN // UNIQUE-ID - PWY-3841 TYPES - Folate-Biosynthesis COMMON-NAME - formylTHF biosynthesis II CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |hartmut| POLYMERIZATION-LINKS - (FORMYL-THF-GLU-N FORMYLTHFGLUSYNTH-RXN FORMYLTHFGLUSYNTH-RXN) POLYMERIZATION-LINKS - (THF-GLU-N FOLYLPOLYGLUTAMATESYNTH-RXN FOLYLPOLYGLUTAMATESYNTH-RXN) PREDECESSORS - (5-FORMYL-THF-CYCLO-LIGASE-RXN RXN-6321) PREDECESSORS - (METHENYLTHFCYCLOHYDRO-RXN 5-FORMYL-THF-CYCLO-LIGASE-RXN) PREDECESSORS - (METHENYLTHFCYCLOHYDRO-RXN METHYLENETHFDEHYDROG-NADP-RXN) PREDECESSORS - (METHYLENETHFDEHYDROG-NADP-RXN GLYOHMETRANS-RXN) PREDECESSORS - (METHYLENETHFDEHYDROG-NADP-RXN GCVMULTI-RXN) PREDECESSORS - (GLYOHMETRANS-RXN DIHYDROFOLATEREDUCT-RXN) PREDECESSORS - (GCVMULTI-RXN DIHYDROFOLATEREDUCT-RXN) PREDECESSORS - (DIHYDROFOLATEREDUCT-RXN DIHYDROFOLATESYNTH-RXN) PREDECESSORS - (1.5.1.20-RXN GCVMULTI-RXN) PREDECESSORS - (1.5.1.20-RXN GLYOHMETRANS-RXN) PREDECESSORS - (THYMIDYLATESYN-RXN GCVMULTI-RXN) PREDECESSORS - (THYMIDYLATESYN-RXN GLYOHMETRANS-RXN) PREDECESSORS - (DIHYDROFOLATEREDUCT-RXN THYMIDYLATESYN-RXN) PREDECESSORS - (RXN-6321 METHYLENETHFDEHYDROG-NADP-RXN) PREDECESSORS - (RXN-6321 5-FORMYL-THF-CYCLO-LIGASE-RXN) PREDECESSORS - (HOMOCYSMETB12-RXN 1.5.1.20-RXN) PREDECESSORS - (FORMATETHFLIG-RXN HOMOCYSMETB12-RXN) PREDECESSORS - (GCVMULTI-RXN HOMOCYSMETB12-RXN) PREDECESSORS - (GLYOHMETRANS-RXN HOMOCYSMETB12-RXN) PRIMARIES - (HOMOCYSMETB12-RXN (5-METHYL-THF) (THF)) PRIMARIES - (HOMOCYSMET-RXN (CPD-1302) (CPD-1301)) PRIMARIES - (RXN-6321 (5-10-METHENYL-THF) (5-FORMYL-THF)) PRIMARIES - (5-FORMYL-THF-CYCLO-LIGASE-RXN (5-FORMYL-THF) (5-10-METHENYL-THF)) PRIMARIES - (FORMATETHFLIG-RXN (THF) (THF)) PRIMARIES - (RXN-6301 (5-METHYL-THF) (THF)) PRIMARIES - (FORMYLTHFGLUSYNTH-RXN (FORMYL-THF-GLU-N) (FORMYL-THF-GLU-N)) PRIMARIES - (THYMIDYLATESYN-RXN (METHYLENE-THF) (DIHYDROFOLATE)) PRIMARIES - (1.5.1.20-RXN (METHYLENE-THF) (5-METHYL-THF)) PRIMARIES - (METHENYLTHFCYCLOHYDRO-RXN (5-10-METHENYL-THF) (10-FORMYL-THF)) PRIMARIES - (METHYLENETHFDEHYDROG-NADP-RXN (METHYLENE-THF) (5-10-METHENYL-THF)) PRIMARIES - (GLYOHMETRANS-RXN (THF) (METHYLENE-THF)) PRIMARIES - (GCVMULTI-RXN (THF) (METHYLENE-THF)) PRIMARIES - (DIHYDROFOLATESYNTH-RXN (7-8-DIHYDROPTEROATE) (DIHYDROFOLATE)) PRIMARIES - (DIHYDROFOLATEREDUCT-RXN (DIHYDROFOLATE) (THF)) REACTION-LAYOUT - (HOMOCYSMETB12-RXN (:LEFT-PRIMARIES 5-METHYL-THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES THF)) REACTION-LAYOUT - (RXN-6321 (:LEFT-PRIMARIES 5-10-METHENYL-THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-FORMYL-THF)) REACTION-LAYOUT - (5-FORMYL-THF-CYCLO-LIGASE-RXN (:LEFT-PRIMARIES 5-FORMYL-THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-10-METHENYL-THF)) REACTION-LAYOUT - (THYMIDYLATESYN-RXN (:LEFT-PRIMARIES METHYLENE-THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROFOLATE)) REACTION-LAYOUT - (1.5.1.20-RXN (:LEFT-PRIMARIES 5-METHYL-THF) (:DIRECTION :R2L) (:RIGHT-PRIMARIES METHYLENE-THF)) REACTION-LAYOUT - (FORMATETHFLIG-RXN (:LEFT-PRIMARIES THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 10-FORMYL-THF)) REACTION-LAYOUT - (METHENYLTHFCYCLOHYDRO-RXN (:LEFT-PRIMARIES 5-10-METHENYL-THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 10-FORMYL-THF)) REACTION-LAYOUT - (METHYLENETHFDEHYDROG-NADP-RXN (:LEFT-PRIMARIES METHYLENE-THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-10-METHENYL-THF)) REACTION-LAYOUT - (GCVMULTI-RXN (:LEFT-PRIMARIES THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES METHYLENE-THF)) REACTION-LAYOUT - (GLYOHMETRANS-RXN (:LEFT-PRIMARIES THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES METHYLENE-THF)) REACTION-LAYOUT - (DIHYDROFOLATEREDUCT-RXN (:LEFT-PRIMARIES THF) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DIHYDROFOLATE)) REACTION-LAYOUT - (DIHYDROFOLATESYNTH-RXN (:LEFT-PRIMARIES 7-8-DIHYDROPTEROATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROFOLATE)) REACTION-LIST - HOMOCYSMETB12-RXN REACTION-LIST - RXN-6321 REACTION-LIST - 5-FORMYL-THF-CYCLO-LIGASE-RXN REACTION-LIST - THYMIDYLATESYN-RXN REACTION-LIST - 1.5.1.20-RXN REACTION-LIST - FORMATETHFLIG-RXN REACTION-LIST - METHENYLTHFCYCLOHYDRO-RXN REACTION-LIST - METHYLENETHFDEHYDROG-NADP-RXN REACTION-LIST - GCVMULTI-RXN REACTION-LIST - GLYOHMETRANS-RXN REACTION-LIST - DIHYDROFOLATEREDUCT-RXN REACTION-LIST - DIHYDROFOLATESYNTH-RXN // UNIQUE-ID - PWY-2161 TYPES - Folate-Biosynthesis COMMON-NAME - folate polyglutamylation I CITATIONS - :EV-COMP-AINF:3497824358:liya CLASS-INSTANCE-LINKS - RXN0-2921 CLASS-INSTANCE-LINKS - FOLYLPOLYGLUTAMATESYNTH-RXN CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (THF FOLSYN-PWY) POLYMERIZATION-LINKS - (FORMYL-THF-GLU-N FORMYLTHFGLUSYNTH-RXN FORMYLTHFGLUSYNTH-RXN) POLYMERIZATION-LINKS - (METHYLENE-THF-GLU-N RXN0-2921 RXN0-2921) POLYMERIZATION-LINKS - (THF-GLU-N FOLYLPOLYGLUTAMATESYNTH-RXN FOLYLPOLYGLUTAMATESYNTH-RXN) PREDECESSORS - (FOLYLPOLYGLUTAMATESYNTH-RXN) PREDECESSORS - (RXN0-2921 GLYOHMETRANS-RXN) PREDECESSORS - (FORMYLTHFGLUSYNTH-RXN FORMATETHFLIG-RXN) PREDECESSORS - (FORMATETHFLIG-RXN GLYOHMETRANS-RXN) PREDECESSORS - (GLYOHMETRANS-RXN) PRIMARIES - (FORMATETHFLIG-RXN (THF) (10-FORMYL-THF)) PRIMARIES - (GLYOHMETRANS-RXN (THF) (METHYLENE-THF)) REACTION-LAYOUT - (FORMYLTHFGLUSYNTH-RXN (:LEFT-PRIMARIES FORMYL-THF-GLU-N) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FORMYL-THF-GLU-N)) REACTION-LAYOUT - (RXN0-2921 (:LEFT-PRIMARIES METHYLENE-THF-GLU-N) (:DIRECTION :L2R) (:RIGHT-PRIMARIES METHYLENE-THF-GLU-N)) REACTION-LAYOUT - (FOLYLPOLYGLUTAMATESYNTH-RXN (:LEFT-PRIMARIES THF-GLU-N) (:DIRECTION :L2R) (:RIGHT-PRIMARIES THF-GLU-N)) REACTION-LAYOUT - (GLYOHMETRANS-RXN (:LEFT-PRIMARIES THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES METHYLENE-THF)) REACTION-LAYOUT - (FORMATETHFLIG-RXN (:LEFT-PRIMARIES THF) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 10-FORMYL-THF)) REACTION-LIST - FORMYLTHFGLUSYNTH-RXN REACTION-LIST - RXN0-2921 REACTION-LIST - FOLYLPOLYGLUTAMATESYNTH-RXN REACTION-LIST - GLYOHMETRANS-RXN REACTION-LIST - FORMATETHFLIG-RXN // UNIQUE-ID - PWY-6147 TYPES - 6-HM-Dihydropterin-PP-Biosynthesis COMMON-NAME - 6-hydroxymethyl-dihydropterin diphosphate biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (DIHYDROPTERIN-CH2OH-PP FOLSYN-PWY) PREDECESSORS - (H2PTERIDINEPYROPHOSPHOKIN-RXN H2NEOPTERINALDOL-RXN) PREDECESSORS - (H2NEOPTERINALDOL-RXN DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN) PREDECESSORS - (DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN) PREDECESSORS - (H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN GTP-CYCLOHYDRO-I-RXN) PREDECESSORS - (GTP-CYCLOHYDRO-I-RXN) PRIMARIES - (DIHYDROFOLATEREDUCT-RXN (DIHYDROFOLATE) (THF)) PRIMARIES - (GART-RXN (10-FORMYL-THF) (THF)) REACTION-LAYOUT - (GTP-CYCLOHYDRO-I-RXN (:LEFT-PRIMARIES GTP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDRONEOPTERIN-P3)) REACTION-LAYOUT - (H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN (:LEFT-PRIMARIES DIHYDRONEOPTERIN-P3) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDRONEOPTERIN-P)) REACTION-LAYOUT - (DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN (:LEFT-PRIMARIES DIHYDRONEOPTERIN-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDRO-NEO-PTERIN)) REACTION-LAYOUT - (H2NEOPTERINALDOL-RXN (:LEFT-PRIMARIES DIHYDRO-NEO-PTERIN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AMINO-OH-HYDROXYMETHYL-DIHYDROPTERIDINE)) REACTION-LAYOUT - (H2PTERIDINEPYROPHOSPHOKIN-RXN (:LEFT-PRIMARIES AMINO-OH-HYDROXYMETHYL-DIHYDROPTERIDINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROPTERIN-CH2OH-PP)) REACTION-LIST - GTP-CYCLOHYDRO-I-RXN REACTION-LIST - H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN REACTION-LIST - DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN REACTION-LIST - H2NEOPTERINALDOL-RXN REACTION-LIST - H2PTERIDINEPYROPHOSPHOKIN-RXN // UNIQUE-ID - PWY-5905 TYPES - Amino-Acid-Biosynthesis COMMON-NAME - hypusine biosynthesis CITATIONS - :EV-COMP-AINF:3497824359:liya CREDITS - O-27 CREDITS - |pujar| PREDECESSORS - (DEOXYHYPUSINE-MONOOXYGENASE-RXN 2.5.1.46-RXN) PRIMARIES - (DEOXYHYPUSINE-MONOOXYGENASE-RXN (CPD-9973) (CPD-9974)) PRIMARIES - (2.5.1.46-RXN (EIF5A-LYSINE) (EIF5A-HYPUSINE)) REACTION-LAYOUT - (DEOXYHYPUSINE-MONOOXYGENASE-RXN (:LEFT-PRIMARIES CPD-9973) (:DIRECTION :L2R) (:RIGHT-PRIMARIES EIF5A-HYPUSINE)) REACTION-LAYOUT - (2.5.1.46-RXN (:LEFT-PRIMARIES EIF5A-LYSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9973)) REACTION-LIST - DEOXYHYPUSINE-MONOOXYGENASE-RXN REACTION-LIST - 2.5.1.46-RXN // UNIQUE-ID - PROSYN-PWY TYPES - PROLINE-SYN COMMON-NAME - proline biosynthesis I CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - O-18 CREDITS - |riley| PATHWAY-LINKS - (GLT (GLUTAMATE-SYN . :INCOMING)) PREDECESSORS - (PYRROLINECARBREDUCT-RXN SPONTPRO-RXN) PREDECESSORS - (SPONTPRO-RXN GLUTSEMIALDEHYDROG-RXN) PREDECESSORS - (GLUTSEMIALDEHYDROG-RXN GLUTKIN-RXN) REACTION-LAYOUT - (GLUTKIN-RXN (:LEFT-PRIMARIES GLT) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-GLUTAMATE-5-P)) REACTION-LAYOUT - (GLUTSEMIALDEHYDROG-RXN (:LEFT-PRIMARIES L-GLUTAMATE_GAMMA-SEMIALDEHYDE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES L-GLUTAMATE-5-P)) REACTION-LAYOUT - (PYRROLINECARBREDUCT-RXN (:LEFT-PRIMARIES PRO) (:DIRECTION :R2L) (:RIGHT-PRIMARIES L-DELTA1-PYRROLINE_5-CARBOXYLATE)) REACTION-LAYOUT - (SPONTPRO-RXN (:LEFT-PRIMARIES L-GLUTAMATE_GAMMA-SEMIALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-DELTA1-PYRROLINE_5-CARBOXYLATE)) REACTION-LIST - GLUTKIN-RXN REACTION-LIST - GLUTSEMIALDEHYDROG-RXN REACTION-LIST - PYRROLINECARBREDUCT-RXN REACTION-LIST - SPONTPRO-RXN // UNIQUE-ID - PWY-4981 TYPES - PROLINE-SYN COMMON-NAME - proline biosynthesis II (from arginine) CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - SRI CREDITS - |caspi| PREDECESSORS - (ORNITHINE-GLU-AMINOTRANSFORASE-RXN CITRULLINASE-RXN) PREDECESSORS - (CITRULLINASE-RXN ARGININE-DEIMINASE-RXN) PREDECESSORS - (ORNCARBAMTRANSFER-RXN ARGININE-DEIMINASE-RXN) PREDECESSORS - (ORNITHINE-GLU-AMINOTRANSFORASE-RXN ORNCARBAMTRANSFER-RXN) PREDECESSORS - (SPONTPRO-RXN ORNITHINE-GLU-AMINOTRANSFORASE-RXN) PREDECESSORS - (PYRROLINECARBREDUCT-RXN SPONTPRO-RXN) REACTION-LAYOUT - (CITRULLINASE-RXN (:LEFT-PRIMARIES L-CITRULLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-ORNITHINE)) REACTION-LAYOUT - (PYRROLINECARBREDUCT-RXN (:LEFT-PRIMARIES PRO) (:DIRECTION :R2L) (:RIGHT-PRIMARIES L-DELTA1-PYRROLINE_5-CARBOXYLATE)) REACTION-LAYOUT - (SPONTPRO-RXN (:LEFT-PRIMARIES L-GLUTAMATE_GAMMA-SEMIALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-DELTA1-PYRROLINE_5-CARBOXYLATE)) REACTION-LAYOUT - (ORNITHINE-GLU-AMINOTRANSFORASE-RXN (:LEFT-PRIMARIES L-ORNITHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-GLUTAMATE_GAMMA-SEMIALDEHYDE)) REACTION-LAYOUT - (ORNCARBAMTRANSFER-RXN (:LEFT-PRIMARIES L-ORNITHINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES L-CITRULLINE)) REACTION-LAYOUT - (ARGININE-DEIMINASE-RXN (:LEFT-PRIMARIES ARG) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-CITRULLINE)) REACTION-LIST - CITRULLINASE-RXN REACTION-LIST - PYRROLINECARBREDUCT-RXN REACTION-LIST - SPONTPRO-RXN REACTION-LIST - ORNITHINE-GLU-AMINOTRANSFORASE-RXN REACTION-LIST - ORNCARBAMTRANSFER-RXN REACTION-LIST - ARGININE-DEIMINASE-RXN // UNIQUE-ID - HISTSYN-PWY TYPES - HISTIDINE-SYN COMMON-NAME - histidine biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - |caspi| CREDITS - SRI CREDITS - |shearer| PATHWAY-LINKS - (PRPP (|FRPP-Biosynthesis| . :INCOMING)) PREDECESSORS - (ATPPHOSPHORIBOSYLTRANS-RXN) PREDECESSORS - (HISTPRATPHYD-RXN ATPPHOSPHORIBOSYLTRANS-RXN) PREDECESSORS - (HISTCYCLOHYD-RXN HISTPRATPHYD-RXN) PREDECESSORS - (PRIBFAICARPISOM-RXN HISTCYCLOHYD-RXN) PREDECESSORS - (GLUTAMIDOTRANS-RXN PRIBFAICARPISOM-RXN) PREDECESSORS - (IMIDPHOSDEHYD-RXN GLUTAMIDOTRANS-RXN) PREDECESSORS - (HISTAMINOTRANS-RXN IMIDPHOSDEHYD-RXN) PREDECESSORS - (HISTIDPHOS-RXN HISTAMINOTRANS-RXN) PREDECESSORS - (HISTOLDEHYD-RXN HISTIDPHOS-RXN) PREDECESSORS - (HISTALDEHYD-RXN HISTOLDEHYD-RXN) PRIMARIES - (GLUTAMIDOTRANS-RXN NIL (AICAR)) REACTION-LAYOUT - (ATPPHOSPHORIBOSYLTRANS-RXN (:LEFT-PRIMARIES PHOSPHORIBOSYL-ATP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PRPP)) REACTION-LAYOUT - (HISTCYCLOHYD-RXN (:LEFT-PRIMARIES PHOSPHORIBOSYL-AMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHORIBOSYL-FORMIMINO-AICAR-P)) REACTION-LAYOUT - (HISTPRATPHYD-RXN (:LEFT-PRIMARIES PHOSPHORIBOSYL-ATP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHORIBOSYL-AMP)) REACTION-LAYOUT - (PRIBFAICARPISOM-RXN (:LEFT-PRIMARIES PHOSPHORIBOSYL-FORMIMINO-AICAR-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHORIBULOSYL-FORMIMINO-AICAR-P)) REACTION-LAYOUT - (GLUTAMIDOTRANS-RXN (:LEFT-PRIMARIES PHOSPHORIBULOSYL-FORMIMINO-AICAR-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AICAR D-ERYTHRO-IMIDAZOLE-GLYCEROL-P)) REACTION-LAYOUT - (IMIDPHOSDEHYD-RXN (:LEFT-PRIMARIES D-ERYTHRO-IMIDAZOLE-GLYCEROL-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES IMIDAZOLE-ACETOL-P)) REACTION-LAYOUT - (HISTAMINOTRANS-RXN (:LEFT-PRIMARIES IMIDAZOLE-ACETOL-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-HISTIDINOL-P)) REACTION-LAYOUT - (HISTIDPHOS-RXN (:LEFT-PRIMARIES L-HISTIDINOL-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HISTIDINOL)) REACTION-LAYOUT - (HISTOLDEHYD-RXN (:LEFT-PRIMARIES HISTIDINOL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HISTIDINAL)) REACTION-LAYOUT - (HISTALDEHYD-RXN (:LEFT-PRIMARIES HISTIDINAL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HIS)) REACTION-LIST - ATPPHOSPHORIBOSYLTRANS-RXN REACTION-LIST - HISTCYCLOHYD-RXN REACTION-LIST - HISTPRATPHYD-RXN REACTION-LIST - PRIBFAICARPISOM-RXN REACTION-LIST - GLUTAMIDOTRANS-RXN REACTION-LIST - IMIDPHOSDEHYD-RXN REACTION-LIST - HISTAMINOTRANS-RXN REACTION-LIST - HISTIDPHOS-RXN REACTION-LIST - HISTOLDEHYD-RXN REACTION-LIST - HISTALDEHYD-RXN // UNIQUE-ID - PWY-6281 TYPES - Selenocysteine-Biosynthesis COMMON-NAME - selenocysteine biosynthesis II (archaea and eukaryotes) CITATIONS - :EV-COMP-AINF:3497824359:liya CREDITS - SRI CREDITS - |fulcher| PATHWAY-LINKS - (SER SERSYN-PWY) PREDECESSORS - (RXN-10039 2.7.9.3-RXN) PREDECESSORS - (2.7.9.3-RXN) PREDECESSORS - (RXN-10039 RXN-10038) PREDECESSORS - (RXN-10038 RXN0-2161) PREDECESSORS - (RXN0-2161) PRIMARIES - (RXN0-2161 (SER) NIL) PRIMARIES - (RXN-10039 (|O-phospho-L-seryl-tRNASecs| SEPO3) (|Charged-SEC-tRNAs|)) REACTION-LAYOUT - (2.7.9.3-RXN (:LEFT-PRIMARIES CPD-678) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SEPO3)) REACTION-LAYOUT - (RXN-10039 (:LEFT-PRIMARIES SEPO3 |O-phospho-L-seryl-tRNASecs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-SEC-tRNAs|)) REACTION-LAYOUT - (RXN-10038 (:LEFT-PRIMARIES |L-seryl-SEC-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |O-phospho-L-seryl-tRNASecs|)) REACTION-LAYOUT - (RXN0-2161 (:LEFT-PRIMARIES SER) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |L-seryl-SEC-tRNAs|)) REACTION-LIST - 2.7.9.3-RXN REACTION-LIST - RXN-10039 REACTION-LIST - RXN-10038 REACTION-LIST - RXN0-2161 // UNIQUE-ID - PHESYN TYPES - PHENYLALANINE-SYN COMMON-NAME - phenylalanine biosynthesis I CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - |ingraham| CREDITS - O0-3 CREDITS - SRI CREDITS - |caspi| CREDITS - O-18 CREDITS - |riley| KEY-REACTIONS - PHEAMINOTRANS-RXN PATHWAY-LINKS - (PHE PWY-5751) PATHWAY-LINKS - (CHORISMATE ARO-PWY) PREDECESSORS - (CHORISMATEMUT-RXN) PREDECESSORS - (PREPHENATEDEHYDRAT-RXN CHORISMATEMUT-RXN) PREDECESSORS - (PHEAMINOTRANS-RXN PREPHENATEDEHYDRAT-RXN) PRIMARIES - (PHEAMINOTRANS-RXN NIL (PHE)) REACTION-LAYOUT - (CHORISMATEMUT-RXN (:LEFT-PRIMARIES CHORISMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PREPHENATE)) REACTION-LAYOUT - (PREPHENATEDEHYDRAT-RXN (:LEFT-PRIMARIES PREPHENATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHENYL-PYRUVATE)) REACTION-LAYOUT - (PHEAMINOTRANS-RXN (:LEFT-PRIMARIES PHENYL-PYRUVATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHE)) REACTION-LIST - CHORISMATEMUT-RXN REACTION-LIST - PREPHENATEDEHYDRAT-RXN REACTION-LIST - PHEAMINOTRANS-RXN // UNIQUE-ID - PWY-3462 TYPES - PHENYLALANINE-SYN COMMON-NAME - phenylalanine biosynthesis II CITATIONS - :EV-COMP-AINF:3497824358:liya KEY-REACTIONS - CARBOXYCYCLOHEXADIENYL-DEHYDRATASE-RXN PATHWAY-LINKS - (CHORISMATE ARO-PWY) PATHWAY-LINKS - (PHE PWY1F-467) PREDECESSORS - (CARBOXYCYCLOHEXADIENYL-DEHYDRATASE-RXN PREPHENATE-TRANSAMINE-RXN) PREDECESSORS - (PREPHENATE-TRANSAMINE-RXN CHORISMATEMUT-RXN) PRIMARIES - (CARBOXYCYCLOHEXADIENYL-DEHYDRATASE-RXN (CPD-659) (PHE)) PRIMARIES - (PREPHENATE-TRANSAMINE-RXN (PREPHENATE) (CPD-659)) PRIMARIES - (CHORISMATEMUT-RXN (CHORISMATE) (PREPHENATE)) REACTION-LAYOUT - (CARBOXYCYCLOHEXADIENYL-DEHYDRATASE-RXN (:LEFT-PRIMARIES CPD-659) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHE)) REACTION-LAYOUT - (PREPHENATE-TRANSAMINE-RXN (:LEFT-PRIMARIES PREPHENATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-659)) REACTION-LAYOUT - (CHORISMATEMUT-RXN (:LEFT-PRIMARIES CHORISMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PREPHENATE)) REACTION-LIST - CARBOXYCYCLOHEXADIENYL-DEHYDRATASE-RXN REACTION-LIST - PREPHENATE-TRANSAMINE-RXN REACTION-LIST - CHORISMATEMUT-RXN // UNIQUE-ID - HOMOSER-THRESYN-PWY TYPES - THREONINE-BIOSYNTHESIS COMMON-NAME - threonine biosynthesis from homoserine CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |shearer| IN-PATHWAY - PWY-724 IN-PATHWAY - THRESYN-PWY IN-PATHWAY - PWY-3001 PATHWAY-LINKS - (THR ILEUSYN-PWY) PATHWAY-LINKS - (HOMO-SER HOMOSERSYN-PWY) PREDECESSORS - (THRESYN-RXN HOMOSERKIN-RXN) REACTION-LAYOUT - (THRESYN-RXN (:LEFT-PRIMARIES O-PHOSPHO-L-HOMOSERINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES THR)) REACTION-LAYOUT - (HOMOSERKIN-RXN (:LEFT-PRIMARIES HOMO-SER) (:DIRECTION :L2R) (:RIGHT-PRIMARIES O-PHOSPHO-L-HOMOSERINE)) REACTION-LIST - THRESYN-RXN REACTION-LIST - HOMOSERKIN-RXN SUPER-PATHWAYS - PWY-724 SUPER-PATHWAYS - THRESYN-PWY SUPER-PATHWAYS - PWY-3001 // UNIQUE-ID - GLNSYN-PWY TYPES - GLUTAMINE-SYN COMMON-NAME - glutamine biosynthesis I CITATIONS - :EV-COMP-AINF:3497824359:liya CREDITS - |shearer| CREDITS - SRI CREDITS - |fulcher| CREDITS - O-18 CREDITS - |riley| PATHWAY-LINKS - (GLN GLUGLNSYN-PWY) PREDECESSORS - (GLUTAMINESYN-RXN) PRIMARIES - (GLUTAMINESYN-RXN (GLT)) REACTION-LAYOUT - (GLUTAMINESYN-RXN (:LEFT-PRIMARIES GLT) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLN)) REACTION-LIST - GLUTAMINESYN-RXN SYNONYMS - glutamine - glutamate pathway // UNIQUE-ID - PWY-5921 TYPES - GLUTAMINE-SYN TYPES - Aminoacyl-tRNAs-Charging COMMON-NAME - L-glutamine biosynthesis II (tRNA-dependent) CITATIONS - :EV-COMP-AINF:3497824359:liya CREDITS - SRI CREDITS - |fulcher| PATHWAY-LINKS - (GLT GLUTAMATE-SYN) PREDECESSORS - (6.3.5.7-RXN RXN-9386) PREDECESSORS - (RXN-9386) PRIMARIES - (RXN-9386 (GLT) (GLUTAMYL-TRNA-GLN)) REACTION-LAYOUT - (6.3.5.7-RXN (:LEFT-PRIMARIES GLUTAMYL-TRNA-GLN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLUTAMINYL-TRNA-GLN GLT)) REACTION-LAYOUT - (RXN-9386 (:LEFT-PRIMARIES GLT) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLUTAMYL-TRNA-GLN)) REACTION-LIST - 6.3.5.7-RXN REACTION-LIST - RXN-9386 SYNONYMS - glutaminyl-tRNAgln biosynthesis via transamidation // UNIQUE-ID - PWY-3941 TYPES - Beta-Alanine-Biosynthesis COMMON-NAME - β-alanine biosynthesis II CITATIONS - :EV-COMP-AINF:3497824357:liya IN-PATHWAY - PWY-4221 PATHWAY-LINKS - (B-ALANINE PWY-3961) PREDECESSORS - (RXN-6383 PROPCOASYN-RXN) PREDECESSORS - (3-HYDROXYPROPIONATE-DEHYDROGENASE-RXN RXN-6384) PREDECESSORS - (RXN-6384 RXN-6383) PREDECESSORS - (PROPIONATE--COA-LIGASE-RXN) PREDECESSORS - (PROPCOASYN-RXN PROPIONATE--COA-LIGASE-RXN) PREDECESSORS - (2.6.1.18-RXN 3-HYDROXYPROPIONATE-DEHYDROGENASE-RXN) PRIMARIES - (2.6.1.18-RXN (MALONATE-S-ALD) (B-ALANINE)) PRIMARIES - (PROPIONATE--COA-LIGASE-RXN (PROPIONATE) (PROPIONYL-COA)) PRIMARIES - (RXN-6384 (3-HYDROXY-PROPIONYL-COA) (3-HYDROXY-PROPIONATE)) PRIMARIES - (RXN-6383 (ACRYLYL-COA) (3-HYDROXY-PROPIONYL-COA)) PRIMARIES - (PROPCOASYN-RXN (PROPIONYL-COA) (ACRYLYL-COA)) PRIMARIES - (3-HYDROXYPROPIONATE-DEHYDROGENASE-RXN (3-HYDROXY-PROPIONATE) (MALONATE-S-ALD)) PRIMARIES - (SPERMIDINE-DEHYDROGENASE-RXN (SPERMIDINE) (CPD-313)) PRIMARIES - (RXN-6381 (CPD-313) (CPD-6082)) PRIMARIES - (RXN-6382 (CPD-6082) (B-ALANINE)) PRIMARIES - (BETA-UREIDOPROPIONASE-RXN (3-UREIDO-PROPIONATE) (B-ALANINE)) PRIMARIES - (DIHYDROPYRIMIDINASE-RXN (DI-H-URACIL) (3-UREIDO-PROPIONATE)) PRIMARIES - (1.3.1.2-RXN (URACIL) (DI-H-URACIL)) REACTION-LAYOUT - (2.6.1.18-RXN (:LEFT-PRIMARIES MALONATE-S-ALD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES B-ALANINE)) REACTION-LAYOUT - (PROPCOASYN-RXN (:LEFT-PRIMARIES ACRYLYL-COA) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PROPIONYL-COA)) REACTION-LAYOUT - (3-HYDROXYPROPIONATE-DEHYDROGENASE-RXN (:LEFT-PRIMARIES 3-HYDROXY-PROPIONATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MALONATE-S-ALD)) REACTION-LAYOUT - (RXN-6384 (:LEFT-PRIMARIES 3-HYDROXY-PROPIONYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-HYDROXY-PROPIONATE)) REACTION-LAYOUT - (RXN-6383 (:LEFT-PRIMARIES ACRYLYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-HYDROXY-PROPIONYL-COA)) REACTION-LAYOUT - (PROPIONATE--COA-LIGASE-RXN (:LEFT-PRIMARIES PROPIONATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PROPIONYL-COA)) REACTION-LIST - 2.6.1.18-RXN REACTION-LIST - PROPCOASYN-RXN REACTION-LIST - 3-HYDROXYPROPIONATE-DEHYDROGENASE-RXN REACTION-LIST - RXN-6384 REACTION-LIST - RXN-6383 REACTION-LIST - PROPIONATE--COA-LIGASE-RXN SUPER-PATHWAYS - PWY-4221 SYNONYMS - β-alanine biosynthesis from proprionate // UNIQUE-ID - PWY-3981 TYPES - Beta-Alanine-Biosynthesis COMMON-NAME - β-alanine biosynthesis I CITATIONS - :EV-COMP-AINF:3497824358:liya PATHWAY-LINKS - (SPERMINE ARGSPECAT-PWY) PATHWAY-LINKS - (SPERMIDINE BSUBPOLYAMSYN-PWY) PATHWAY-LINKS - (B-ALANINE PANTO-PWY PWY-3961) PREDECESSORS - (RXN-6423 SPERMIDINE-DEHYDROGENASE-RXN) PREDECESSORS - (RXN-6382 RXN-6381) PREDECESSORS - (RXN-6381 SPERMIDINE-DEHYDROGENASE-RXN) PREDECESSORS - (SPERMIDINE-DEHYDROGENASE-RXN) PREDECESSORS - (RXN-6421) PREDECESSORS - (RXN-6381 RXN-6421) PREDECESSORS - (RXN-6425 RXN-6424) PREDECESSORS - (RXN-6424 RXN-6421) PRIMARIES - (RXN-6425 (CPD-6123) (CPD-6122)) PRIMARIES - (RXN-6424 (CPD-6121) (CPD-6123)) PRIMARIES - (RXN-6421 (SPERMINE) (CPD-6121 CPD-313)) PRIMARIES - (SPERMIDINE-DEHYDROGENASE-RXN (SPERMIDINE) (4-AMINO-BUTYRALDEHYDE CPD-313)) PRIMARIES - (RXN-6423 (4-AMINO-BUTYRALDEHYDE) (CPD-6124)) PRIMARIES - (RXN-6382 (CPD-6082) (B-ALANINE)) PRIMARIES - (RXN-6381 (CPD-313) (CPD-6082)) REACTION-LAYOUT - (RXN-6424 (:LEFT-PRIMARIES CPD-6121) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6123)) REACTION-LAYOUT - (RXN-6425 (:LEFT-PRIMARIES CPD-6123) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6122)) REACTION-LAYOUT - (RXN-6423 (:LEFT-PRIMARIES 4-AMINO-BUTYRALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6124)) REACTION-LAYOUT - (RXN-6421 (:LEFT-PRIMARIES SPERMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-313 CPD-6121)) REACTION-LAYOUT - (RXN-6382 (:LEFT-PRIMARIES CPD-6082) (:DIRECTION :L2R) (:RIGHT-PRIMARIES B-ALANINE)) REACTION-LAYOUT - (RXN-6381 (:LEFT-PRIMARIES CPD-313) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6082)) REACTION-LAYOUT - (SPERMIDINE-DEHYDROGENASE-RXN (:LEFT-PRIMARIES SPERMIDINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 4-AMINO-BUTYRALDEHYDE CPD-313)) REACTION-LIST - RXN-6424 REACTION-LIST - RXN-6425 REACTION-LIST - RXN-6423 REACTION-LIST - RXN-6421 REACTION-LIST - RXN-6382 REACTION-LIST - RXN-6381 REACTION-LIST - SPERMIDINE-DEHYDROGENASE-RXN SYNONYMS - β-alanine biosynthesis from polyamines // UNIQUE-ID - PWY-4341 TYPES - GLUTAMATE-SYN COMMON-NAME - glutamate biosynthesis V CITATIONS - :EV-COMP-AINF:3497824359:liya CREDITS - SRI CREDITS - |caspi| CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |zhang| PRIMARIES - (GLUTAMATE-SYNTHASE-FERREDOXIN-RXN (2-KETOGLUTARATE GLN) (GLT)) REACTION-LAYOUT - (GLUTAMATE-SYNTHASE-FERREDOXIN-RXN (:LEFT-PRIMARIES GLT) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GLN 2-KETOGLUTARATE)) REACTION-LIST - GLUTAMATE-SYNTHASE-FERREDOXIN-RXN // UNIQUE-ID - GLUGLNSYN-PWY TYPES - GLUTAMATE-SYN COMMON-NAME - glutamate biosynthesis IV CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - |hong| CREDITS - |balakrishnan| CREDITS - SRI CREDITS - |caspi| CREDITS - O-16 PATHWAY-LINKS - (GLN GLNSYN-PWY) PREDECESSORS - (GLUTAMATE-SYNTHASE-NADH-RXN) PRIMARIES - (GLUTAMATE-SYNTHASE-NADH-RXN (GLN) (GLT)) PRIMARIES - (GLUTAMATESYN-RXN (GLN) (GLT)) REACTION-LAYOUT - (GLUTAMATE-SYNTHASE-NADH-RXN (:LEFT-PRIMARIES GLT) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GLN)) REACTION-LIST - GLUTAMATE-SYNTHASE-NADH-RXN SYNONYMS - glutamate biosynthesis from glutamine // UNIQUE-ID - PWY-5097 TYPES - LYSINE-SYN COMMON-NAME - lysine biosynthesis VI CITATIONS - :EV-COMP-AINF:3497824358:liya IN-PATHWAY - PWY-724 KEY-REACTIONS - DIAMINOPIMEPIM-RXN KEY-REACTIONS - RXN-7737 PREDECESSORS - (DIHYDRODIPICSYN-RXN ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN) PREDECESSORS - (DIAMINOPIMDECARB-RXN DIAMINOPIMEPIM-RXN) PREDECESSORS - (DIAMINOPIMEPIM-RXN RXN-7737) PREDECESSORS - (RXN-7737 DIHYDROPICRED-RXN) PREDECESSORS - (DIHYDROPICRED-RXN DIHYDRODIPICSYN-RXN) PREDECESSORS - (ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN ASPARTATEKIN-RXN) PRIMARIES - (RXN-7737 (DELTA1-PIPERIDEINE-2-6-DICARBOXYLATE) (LL-DIAMINOPIMELATE)) PRIMARIES - (DIAMINOPIMDECARB-RXN (MESO-DIAMINOPIMELATE) (LYS)) PRIMARIES - (DIAMINOPIMEPIM-RXN (LL-DIAMINOPIMELATE) (MESO-DIAMINOPIMELATE)) PRIMARIES - (DIHYDROPICRED-RXN (2-3-DIHYDRODIPICOLINATE) (DELTA1-PIPERIDEINE-2-6-DICARBOXYLATE)) PRIMARIES - (DIHYDRODIPICSYN-RXN (L-ASPARTATE-SEMIALDEHYDE) (2-3-DIHYDRODIPICOLINATE)) PRIMARIES - (ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN (L-BETA-ASPARTYL-P) (L-ASPARTATE-SEMIALDEHYDE)) PRIMARIES - (ASPARTATEKIN-RXN (L-ASPARTATE) (L-BETA-ASPARTYL-P)) REACTION-LAYOUT - (DIAMINOPIMDECARB-RXN (:LEFT-PRIMARIES MESO-DIAMINOPIMELATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES LYS)) REACTION-LAYOUT - (DIAMINOPIMEPIM-RXN (:LEFT-PRIMARIES LL-DIAMINOPIMELATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MESO-DIAMINOPIMELATE)) REACTION-LAYOUT - (RXN-7737 (:LEFT-PRIMARIES DELTA1-PIPERIDEINE-2-6-DICARBOXYLATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES LL-DIAMINOPIMELATE)) REACTION-LAYOUT - (DIHYDROPICRED-RXN (:LEFT-PRIMARIES DELTA1-PIPERIDEINE-2-6-DICARBOXYLATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 2-3-DIHYDRODIPICOLINATE)) REACTION-LAYOUT - (DIHYDRODIPICSYN-RXN (:LEFT-PRIMARIES L-ASPARTATE-SEMIALDEHYDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-3-DIHYDRODIPICOLINATE)) REACTION-LAYOUT - (ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN (:LEFT-PRIMARIES L-ASPARTATE-SEMIALDEHYDE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES L-BETA-ASPARTYL-P)) REACTION-LAYOUT - (ASPARTATEKIN-RXN (:LEFT-PRIMARIES L-ASPARTATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-BETA-ASPARTYL-P)) REACTION-LIST - DIAMINOPIMDECARB-RXN REACTION-LIST - DIAMINOPIMEPIM-RXN REACTION-LIST - RXN-7737 REACTION-LIST - DIHYDROPICRED-RXN REACTION-LIST - DIHYDRODIPICSYN-RXN REACTION-LIST - ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN REACTION-LIST - ASPARTATEKIN-RXN SUPER-PATHWAYS - PWY-724 // UNIQUE-ID - ARGSYNBSUB-PWY TYPES - ARGININE-SYN COMMON-NAME - arginine biosynthesis II (acetyl cycle) CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - SRI CREDITS - |caspi| CREDITS - O-18 CREDITS - |pellegrini-toole| KEY-REACTIONS - N-ACETYLTRANSFER-RXN KEY-REACTIONS - GLUTAMATE-N-ACETYLTRANSFERASE-RXN PATHWAY-LINKS - (GLT PROLINE-SYN) PATHWAY-LINKS - (CARBAMOYL-P (PWY0-162 . :OUTGOING)) PREDECESSORS - (ACETYLGLUTKIN-RXN GLUTAMATE-N-ACETYLTRANSFERASE-RXN) PREDECESSORS - (GLUTAMATE-N-ACETYLTRANSFERASE-RXN ACETYLORNTRANSAM-RXN) PREDECESSORS - (ORNCARBAMTRANSFER-RXN GLUTAMATE-N-ACETYLTRANSFERASE-RXN) PREDECESSORS - (N-ACETYLTRANSFER-RXN) PREDECESSORS - (ORNCARBAMTRANSFER-RXN CARBPSYN-RXN) PREDECESSORS - (ACETYLGLUTKIN-RXN N-ACETYLTRANSFER-RXN) PREDECESSORS - (N-ACETYLGLUTPREDUCT-RXN ACETYLGLUTKIN-RXN) PREDECESSORS - (ACETYLORNTRANSAM-RXN N-ACETYLGLUTPREDUCT-RXN) PREDECESSORS - (ARGSUCCINSYN-RXN ORNCARBAMTRANSFER-RXN) PREDECESSORS - (ARGSUCCINLYA-RXN ARGSUCCINSYN-RXN) PRIMARIES - (ARGSUCCINLYA-RXN (L-ARGININO-SUCCINATE) (ARG)) PRIMARIES - (CARBPSYN-RXN (GLN) (CARBAMOYL-P)) REACTION-LAYOUT - (N-ACETYLTRANSFER-RXN (:LEFT-PRIMARIES GLT) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ACETYL-GLU)) REACTION-LAYOUT - (CARBPSYN-RXN (:LEFT-PRIMARIES GLN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CARBAMOYL-P GLT)) REACTION-LAYOUT - (GLUTAMATE-N-ACETYLTRANSFERASE-RXN (:LEFT-PRIMARIES N-ALPHA-ACETYLORNITHINE GLT) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-ORNITHINE ACETYL-GLU)) REACTION-LAYOUT - (ACETYLGLUTKIN-RXN (:LEFT-PRIMARIES ACETYL-GLU) (:DIRECTION :L2R) (:RIGHT-PRIMARIES N-ACETYL-GLUTAMYL-P)) REACTION-LAYOUT - (N-ACETYLGLUTPREDUCT-RXN (:LEFT-PRIMARIES CPD-469) (:DIRECTION :R2L) (:RIGHT-PRIMARIES N-ACETYL-GLUTAMYL-P)) REACTION-LAYOUT - (ACETYLORNTRANSAM-RXN (:LEFT-PRIMARIES N-ALPHA-ACETYLORNITHINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CPD-469 GLT)) REACTION-LAYOUT - (ORNCARBAMTRANSFER-RXN (:LEFT-PRIMARIES CARBAMOYL-P L-ORNITHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-CITRULLINE)) REACTION-LAYOUT - (ARGSUCCINLYA-RXN (:LEFT-PRIMARIES L-ARGININO-SUCCINATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ARG)) REACTION-LAYOUT - (ARGSUCCINSYN-RXN (:LEFT-PRIMARIES L-CITRULLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-ARGININO-SUCCINATE)) REACTION-LIST - N-ACETYLTRANSFER-RXN REACTION-LIST - CARBPSYN-RXN REACTION-LIST - GLUTAMATE-N-ACETYLTRANSFERASE-RXN REACTION-LIST - ACETYLGLUTKIN-RXN REACTION-LIST - N-ACETYLGLUTPREDUCT-RXN REACTION-LIST - ACETYLORNTRANSAM-RXN REACTION-LIST - ORNCARBAMTRANSFER-RXN REACTION-LIST - ARGSUCCINLYA-RXN REACTION-LIST - ARGSUCCINSYN-RXN // UNIQUE-ID - VALSYN-PWY TYPES - VALINE-BIOSYNTHESIS COMMON-NAME - valine biosynthesis CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - O-18 CREDITS - |riley| CREDITS - SRI CREDITS - |shearer| IN-PATHWAY - BRANCHED-CHAIN-AA-SYN-PWY PATHWAY-LINKS - (2-KETO-ISOVALERATE LEUSYN-PWY) PREDECESSORS - (BRANCHED-CHAINAMINOTRANSFERVAL-RXN DIHYDROXYISOVALDEHYDRAT-RXN) PREDECESSORS - (DIHYDROXYISOVALDEHYDRAT-RXN ACETOLACTREDUCTOISOM-RXN) PREDECESSORS - (ACETOLACTREDUCTOISOM-RXN ACETOLACTSYN-RXN) PREDECESSORS - (ACETOLACTSYN-RXN) REACTION-LAYOUT - (ACETOLACTSYN-RXN (:LEFT-PRIMARIES PYRUVATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-ACETO-LACTATE)) REACTION-LAYOUT - (ACETOLACTREDUCTOISOM-RXN (:LEFT-PRIMARIES DIOH-ISOVALERATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 2-ACETO-LACTATE)) REACTION-LAYOUT - (BRANCHED-CHAINAMINOTRANSFERVAL-RXN (:LEFT-PRIMARIES VAL) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 2-KETO-ISOVALERATE)) REACTION-LAYOUT - (DIHYDROXYISOVALDEHYDRAT-RXN (:LEFT-PRIMARIES DIOH-ISOVALERATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-KETO-ISOVALERATE)) REACTION-LIST - ACETOLACTSYN-RXN REACTION-LIST - ACETOLACTREDUCTOISOM-RXN REACTION-LIST - BRANCHED-CHAINAMINOTRANSFERVAL-RXN REACTION-LIST - DIHYDROXYISOVALDEHYDRAT-RXN SUPER-PATHWAYS - BRANCHED-CHAIN-AA-SYN-PWY // UNIQUE-ID - PWY-6196 TYPES - SERINE-BIOSYNTHESIS COMMON-NAME - serine racemization CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - O-28 CREDITS - |pujar| PATHWAY-LINKS - (SER SERSYN-PWY) PREDECESSORS - (DSERDEAM-RXN 5.1.1.18-RXN) PREDECESSORS - (5.1.1.18-RXN) REACTION-LAYOUT - (DSERDEAM-RXN (:LEFT-PRIMARIES D-SERINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PYRUVATE)) REACTION-LAYOUT - (5.1.1.18-RXN (:LEFT-PRIMARIES SER) (:DIRECTION :L2R) (:RIGHT-PRIMARIES D-SERINE)) REACTION-LIST - DSERDEAM-RXN REACTION-LIST - 5.1.1.18-RXN SYNONYMS - D serine biosynthesis // UNIQUE-ID - SERSYN-PWY TYPES - SERINE-BIOSYNTHESIS COMMON-NAME - serine biosynthesis CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - O-18 CREDITS - |riley| IN-PATHWAY - SER-GLYSYN-PWY PATHWAY-LINKS - (SER TRPSYN-PWY GLYSYN-PWY CYSTSYN-PWY) PATHWAY-LINKS - (G3P GLYCOLYSIS) PREDECESSORS - (PGLYCDEHYDROG-RXN) PREDECESSORS - (PSERTRANSAM-RXN PGLYCDEHYDROG-RXN) PREDECESSORS - (RXN0-5114 PSERTRANSAM-RXN) REACTION-LAYOUT - (RXN0-5114 (:LEFT-PRIMARIES 3-P-SERINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SER)) REACTION-LAYOUT - (PGLYCDEHYDROG-RXN (:LEFT-PRIMARIES G3P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-P-HYDROXYPYRUVATE)) REACTION-LAYOUT - (PSERTRANSAM-RXN (:LEFT-PRIMARIES 3-P-SERINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 3-P-HYDROXYPYRUVATE)) REACTION-LIST - RXN0-5114 REACTION-LIST - PGLYCDEHYDROG-RXN REACTION-LIST - PSERTRANSAM-RXN SUPER-PATHWAYS - SER-GLYSYN-PWY // UNIQUE-ID - LEUSYN-PWY TYPES - LEUCINE-SYN COMMON-NAME - leucine biosynthesis CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - |caspi| CREDITS - O-18 CREDITS - |riley| CREDITS - SRI CREDITS - |shearer| IN-PATHWAY - BRANCHED-CHAIN-AA-SYN-PWY PATHWAY-LINKS - (2-KETO-ISOVALERATE VALSYN-PWY) PREDECESSORS - (3-ISOPROPYLMALISOM-RXN 2-ISOPROPYLMALATESYN-RXN) PREDECESSORS - (RXN-8991 3-ISOPROPYLMALISOM-RXN) PREDECESSORS - (3-ISOPROPYLMALDEHYDROG-RXN RXN-8991) PREDECESSORS - (BRANCHED-CHAINAMINOTRANSFERLEU-RXN RXN-7800) PREDECESSORS - (RXN-7800 3-ISOPROPYLMALDEHYDROG-RXN) REACTION-LAYOUT - (RXN-8991 (:LEFT-PRIMARIES 2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CPD-9451)) REACTION-LAYOUT - (RXN-7800 (:LEFT-PRIMARIES CPD-7100) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2K-4CH3-PENTANOATE)) REACTION-LAYOUT - (2-ISOPROPYLMALATESYN-RXN (:LEFT-PRIMARIES 2-KETO-ISOVALERATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-CARBOXY-3-HYDROXY-ISOCAPROATE)) REACTION-LAYOUT - (3-ISOPROPYLMALISOM-RXN (:LEFT-PRIMARIES 3-CARBOXY-3-HYDROXY-ISOCAPROATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9451)) REACTION-LAYOUT - (BRANCHED-CHAINAMINOTRANSFERLEU-RXN (:LEFT-PRIMARIES LEU) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 2K-4CH3-PENTANOATE)) REACTION-LAYOUT - (3-ISOPROPYLMALDEHYDROG-RXN (:LEFT-PRIMARIES 2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-7100)) REACTION-LIST - RXN-8991 REACTION-LIST - RXN-7800 REACTION-LIST - 2-ISOPROPYLMALATESYN-RXN REACTION-LIST - 3-ISOPROPYLMALISOM-RXN REACTION-LIST - BRANCHED-CHAINAMINOTRANSFERLEU-RXN REACTION-LIST - 3-ISOPROPYLMALDEHYDROG-RXN SUPER-PATHWAYS - BRANCHED-CHAIN-AA-SYN-PWY // UNIQUE-ID - CYSTSYN-PWY TYPES - CYSTEINE-SYN COMMON-NAME - cysteine biosynthesis I CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (SER SERSYN-PWY) PREDECESSORS - (ACSERLY-RXN SERINE-O-ACETTRAN-RXN) PREDECESSORS - (SERINE-O-ACETTRAN-RXN) PRIMARIES - (ACSERLY-RXN NIL (CYS)) REACTION-LAYOUT - (ACSERLY-RXN (:LEFT-PRIMARIES ACETYLSERINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CYS)) REACTION-LAYOUT - (SERINE-O-ACETTRAN-RXN (:LEFT-PRIMARIES SER) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ACETYLSERINE)) REACTION-LIST - ACSERLY-RXN REACTION-LIST - SERINE-O-ACETTRAN-RXN // UNIQUE-ID - GLYSYN-ALA-PWY TYPES - GLYCINE-SYN COMMON-NAME - glycine biosynthesis III CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - |hong| CREDITS - O-16 CREDITS - |krieger| PATHWAY-LINKS - (GLYOX GLYOXYLATE-BYPASS) PREDECESSORS - (ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN) PRIMARIES - (ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN (GLYOX) (GLY)) REACTION-LAYOUT - (ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN (:LEFT-PRIMARIES GLYOX) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLY)) REACTION-LIST - ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN // UNIQUE-ID - GLYSYN-THR-PWY TYPES - GLYCINE-SYN COMMON-NAME - glycine biosynthesis IV CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - SRI CREDITS - |caspi| CREDITS - |hong| CREDITS - O-16 CREDITS - |krieger| PATHWAY-LINKS - (THR THRESYN-PWY) PREDECESSORS - (THREONINE-ALDOLASE-RXN) PRIMARIES - (THREONINE-ALDOLASE-RXN (THR) (GLY)) REACTION-LAYOUT - (THREONINE-ALDOLASE-RXN (:LEFT-PRIMARIES THR) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLY)) REACTION-LIST - THREONINE-ALDOLASE-RXN // UNIQUE-ID - GLYSYN-PWY TYPES - GLYCINE-SYN COMMON-NAME - glycine biosynthesis I CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |caspi| CREDITS - O-18 CREDITS - |riley| IN-PATHWAY - SER-GLYSYN-PWY PATHWAY-LINKS - (SER SERSYN-PWY) PREDECESSORS - (GLYOHMETRANS-RXN) PRIMARIES - (GLYOHMETRANS-RXN (SER) (GLY)) REACTION-LAYOUT - (GLYOHMETRANS-RXN (:LEFT-PRIMARIES SER) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLY)) REACTION-LIST - GLYOHMETRANS-RXN SUPER-PATHWAYS - SER-GLYSYN-PWY // UNIQUE-ID - TRPSYN-PWY TYPES - TRYPTOPHAN-BIOSYNTHESIS COMMON-NAME - tryptophan biosynthesis CITATIONS - :EV-COMP-AINF:3497824358:liya PATHWAY-LINKS - (CHORISMATE ARO-PWY) PREDECESSORS - (ANTHRANSYN-RXN) PREDECESSORS - (PRTRANS-RXN ANTHRANSYN-RXN) PREDECESSORS - (PRAISOM-RXN PRTRANS-RXN) PREDECESSORS - (IGPSYN-RXN PRAISOM-RXN) PREDECESSORS - (RXN0-2381 IGPSYN-RXN) PREDECESSORS - (RXN0-2382 RXN0-2381) PRIMARIES - (RXN0-2382 (INDOLE SER) (TRP)) REACTION-LAYOUT - (RXN0-2382 (:LEFT-PRIMARIES SER INDOLE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TRP)) REACTION-LAYOUT - (RXN0-2381 (:LEFT-PRIMARIES INDOLE-3-GLYCEROL-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INDOLE)) REACTION-LAYOUT - (ANTHRANSYN-RXN (:LEFT-PRIMARIES CHORISMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ANTHRANILATE)) REACTION-LAYOUT - (PRTRANS-RXN (:LEFT-PRIMARIES N-5-PHOSPHORIBOSYL-ANTHRANILATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES ANTHRANILATE)) REACTION-LAYOUT - (PRAISOM-RXN (:LEFT-PRIMARIES N-5-PHOSPHORIBOSYL-ANTHRANILATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CARBOXYPHENYLAMINO-DEOXYRIBULOSE-P)) REACTION-LAYOUT - (IGPSYN-RXN (:LEFT-PRIMARIES CARBOXYPHENYLAMINO-DEOXYRIBULOSE-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES INDOLE-3-GLYCEROL-P)) REACTION-LIST - RXN0-2382 REACTION-LIST - RXN0-2381 REACTION-LIST - ANTHRANSYN-RXN REACTION-LIST - PRTRANS-RXN REACTION-LIST - PRAISOM-RXN REACTION-LIST - IGPSYN-RXN // UNIQUE-ID - PWY-5441 TYPES - METHIONINE-SYN COMMON-NAME - S-methylmethionine cycle CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |zhang| PREDECESSORS - (MMUM-RXN METHIONINE-S-METHYLTRANSFERASE-RXN) PREDECESSORS - (METHIONINE-S-METHYLTRANSFERASE-RXN MMUM-RXN) PRIMARIES - (MMUM-RXN (CPD-397) (MET)) PRIMARIES - (METHIONINE-S-METHYLTRANSFERASE-RXN (MET) (CPD-397)) PRIMARIES - (HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN (HOMO-CYS) (MET)) REACTION-LAYOUT - (MMUM-RXN (:LEFT-PRIMARIES CPD-397) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MET)) REACTION-LAYOUT - (METHIONINE-S-METHYLTRANSFERASE-RXN (:LEFT-PRIMARIES MET) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-397)) REACTION-LIST - MMUM-RXN REACTION-LIST - METHIONINE-S-METHYLTRANSFERASE-RXN SYNONYMS - SMM cycle // UNIQUE-ID - PWY-702 TYPES - METHIONINE-SYN COMMON-NAME - methionine biosynthesis II CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |zhang| IN-PATHWAY - PWY-724 PATHWAY-LINKS - (HOMO-SER HOMOSERSYN-PWY) PREDECESSORS - (MMUM-RXN CYSTATHIONINE-BETA-LYASE-RXN) PREDECESSORS - (HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN CYSTATHIONINE-BETA-LYASE-RXN) PREDECESSORS - (CYSPH-RXN HOMOSERKIN-RXN) PREDECESSORS - (CYSTATHIONINE-BETA-LYASE-RXN CYSPH-RXN) PREDECESSORS - (HOMOCYSMET-RXN CYSTATHIONINE-BETA-LYASE-RXN) PRIMARIES - (MMUM-RXN (HOMO-CYS) (MET)) PRIMARIES - (HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN (HOMO-CYS) (MET)) PRIMARIES - (HOMOCYSMET-RXN (HOMO-CYS) (MET)) PRIMARIES - (CYSTATHIONINE-BETA-LYASE-RXN (L-CYSTATHIONINE) (HOMO-CYS)) PRIMARIES - (CYSPH-RXN (O-PHOSPHO-L-HOMOSERINE) (L-CYSTATHIONINE)) PRIMARIES - (HOMOSERKIN-RXN (HOMO-SER) (O-PHOSPHO-L-HOMOSERINE)) REACTION-LAYOUT - (MMUM-RXN (:LEFT-PRIMARIES HOMO-CYS) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MET)) REACTION-LAYOUT - (HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN (:LEFT-PRIMARIES HOMO-CYS) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MET)) REACTION-LAYOUT - (HOMOCYSMET-RXN (:LEFT-PRIMARIES HOMO-CYS) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MET)) REACTION-LAYOUT - (CYSTATHIONINE-BETA-LYASE-RXN (:LEFT-PRIMARIES L-CYSTATHIONINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HOMO-CYS)) REACTION-LAYOUT - (CYSPH-RXN (:LEFT-PRIMARIES O-PHOSPHO-L-HOMOSERINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-CYSTATHIONINE)) REACTION-LAYOUT - (HOMOSERKIN-RXN (:LEFT-PRIMARIES HOMO-SER) (:DIRECTION :L2R) (:RIGHT-PRIMARIES O-PHOSPHO-L-HOMOSERINE)) REACTION-LIST - MMUM-RXN REACTION-LIST - HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN REACTION-LIST - HOMOCYSMET-RXN REACTION-LIST - CYSTATHIONINE-BETA-LYASE-RXN REACTION-LIST - CYSPH-RXN REACTION-LIST - HOMOSERKIN-RXN SUPER-PATHWAYS - PWY-724 SYNONYMS - methionine biosynthesis from homoserine II // UNIQUE-ID - PWY-5041 TYPES - S-adenosyl-L-methionine-cycle COMMON-NAME - S-adenosyl-L-methionine cycle II CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |caspi| KEY-REACTIONS - ADENOSYLHOMOCYSTEINASE-RXN PREDECESSORS - (S-ADENMETSYN-RXN HOMOCYSMET-RXN) PREDECESSORS - (RXN-7605 S-ADENMETSYN-RXN) PREDECESSORS - (ADENOSYLHOMOCYSTEINASE-RXN RXN-7605) PREDECESSORS - (HOMOCYSMET-RXN ADENOSYLHOMOCYSTEINASE-RXN) PRIMARIES - (HOMOCYSMET-RXN (HOMO-CYS) (MET)) PRIMARIES - (RXN-6301 (HOMO-CYS) (MET)) PRIMARIES - (RXN-7605 (S-ADENOSYLMETHIONINE) (ADENOSYL-HOMO-CYS)) PRIMARIES - (HOMOCYSMETB12-RXN (HOMO-CYS) (MET)) PRIMARIES - (ADENOSYLHOMOCYSTEINASE-RXN (ADENOSYL-HOMO-CYS) (HOMO-CYS)) PRIMARIES - (S-ADENMETSYN-RXN (MET) (S-ADENOSYLMETHIONINE)) REACTION-LAYOUT - (HOMOCYSMET-RXN (:LEFT-PRIMARIES HOMO-CYS) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MET)) REACTION-LAYOUT - (RXN-7605 (:LEFT-PRIMARIES S-ADENOSYLMETHIONINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ADENOSYL-HOMO-CYS)) REACTION-LAYOUT - (ADENOSYLHOMOCYSTEINASE-RXN (:LEFT-PRIMARIES ADENOSYL-HOMO-CYS) (:DIRECTION :L2R) (:RIGHT-PRIMARIES HOMO-CYS)) REACTION-LAYOUT - (S-ADENMETSYN-RXN (:LEFT-PRIMARIES MET) (:DIRECTION :L2R) (:RIGHT-PRIMARIES S-ADENOSYLMETHIONINE)) REACTION-LIST - HOMOCYSMET-RXN REACTION-LIST - RXN-7605 REACTION-LIST - ADENOSYLHOMOCYSTEINASE-RXN REACTION-LIST - S-ADENMETSYN-RXN SYNONYMS - activated methyl cycle SYNONYMS - SAM cycle // UNIQUE-ID - ILEUSYN-PWY TYPES - ISOLEUCINE-SYN COMMON-NAME - isoleucine biosynthesis I (from threonine) CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - O-18 CREDITS - |riley| CREDITS - SRI CREDITS - |shearer| IN-PATHWAY - BRANCHED-CHAIN-AA-SYN-PWY IN-PATHWAY - PWY-3001 PATHWAY-LINKS - (THR HOMOSER-THRESYN-PWY) PREDECESSORS - (THREDEHYD-RXN) PREDECESSORS - (ACETOOHBUTSYN-RXN THREDEHYD-RXN) PREDECESSORS - (ACETOOHBUTREDUCTOISOM-RXN ACETOOHBUTSYN-RXN) PREDECESSORS - (DIHYDROXYMETVALDEHYDRAT-RXN ACETOOHBUTREDUCTOISOM-RXN) PREDECESSORS - (BRANCHED-CHAINAMINOTRANSFERILEU-RXN DIHYDROXYMETVALDEHYDRAT-RXN) REACTION-LAYOUT - (THREDEHYD-RXN (:LEFT-PRIMARIES THR) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-OXOBUTANOATE)) REACTION-LAYOUT - (ACETOOHBUTSYN-RXN (:LEFT-PRIMARIES 2-OXOBUTANOATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-ACETO-2-HYDROXY-BUTYRATE)) REACTION-LAYOUT - (ACETOOHBUTREDUCTOISOM-RXN (:LEFT-PRIMARIES 2-ACETO-2-HYDROXY-BUTYRATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 1-KETO-2-METHYLVALERATE)) REACTION-LAYOUT - (BRANCHED-CHAINAMINOTRANSFERILEU-RXN (:LEFT-PRIMARIES ILE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 2-KETO-3-METHYL-VALERATE)) REACTION-LAYOUT - (DIHYDROXYMETVALDEHYDRAT-RXN (:LEFT-PRIMARIES 1-KETO-2-METHYLVALERATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 2-KETO-3-METHYL-VALERATE)) REACTION-LIST - THREDEHYD-RXN REACTION-LIST - ACETOOHBUTSYN-RXN REACTION-LIST - ACETOOHBUTREDUCTOISOM-RXN REACTION-LIST - BRANCHED-CHAINAMINOTRANSFERILEU-RXN REACTION-LIST - DIHYDROXYMETVALDEHYDRAT-RXN SUPER-PATHWAYS - BRANCHED-CHAIN-AA-SYN-PWY SUPER-PATHWAYS - PWY-3001 // UNIQUE-ID - HOMOSERSYN-PWY TYPES - Other-Amino-Acid-Biosynthesis COMMON-NAME - homoserine biosynthesis CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - |paley| CREDITS - SRI CREDITS - |shearer| IN-PATHWAY - PWY-724 IN-PATHWAY - THRESYN-PWY IN-PATHWAY - PWY-3001 PATHWAY-LINKS - (L-ASPARTATE ASPARTATESYN-PWY) PATHWAY-LINKS - (HOMO-SER PWY-702 HOMOSER-THRESYN-PWY) PREDECESSORS - (ASPARTATEKIN-RXN) PREDECESSORS - (ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN ASPARTATEKIN-RXN) PREDECESSORS - (HOMOSERDEHYDROG-RXN ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN) REACTION-LAYOUT - (HOMOSERDEHYDROG-RXN (:LEFT-PRIMARIES HOMO-SER) (:DIRECTION :R2L) (:RIGHT-PRIMARIES L-ASPARTATE-SEMIALDEHYDE)) REACTION-LAYOUT - (ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN (:LEFT-PRIMARIES L-ASPARTATE-SEMIALDEHYDE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES L-BETA-ASPARTYL-P)) REACTION-LAYOUT - (ASPARTATEKIN-RXN (:LEFT-PRIMARIES L-ASPARTATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-BETA-ASPARTYL-P)) REACTION-LIST - HOMOSERDEHYDROG-RXN REACTION-LIST - ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN REACTION-LIST - ASPARTATEKIN-RXN SUPER-PATHWAYS - PWY-724 SUPER-PATHWAYS - THRESYN-PWY SUPER-PATHWAYS - PWY-3001 // UNIQUE-ID - PWY-5957 TYPES - Other-Amino-Acid-Biosynthesis COMMON-NAME - nicotianamine biosynthesis CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - O-27 CREDITS - |pujar| PREDECESSORS - (2.5.1.43-RXN) PRIMARIES - (2.5.1.43-RXN (S-ADENOSYLMETHIONINE) (CPD-463)) REACTION-LAYOUT - (2.5.1.43-RXN (:LEFT-PRIMARIES S-ADENOSYLMETHIONINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-463)) REACTION-LIST - 2.5.1.43-RXN SYNONYMS - NA biosynthesis // UNIQUE-ID - CITRULBIO-PWY TYPES - Citrulline-Biosynthesis COMMON-NAME - citrulline biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (PRO PROSYN-PWY) PATHWAY-LINKS - (GLN (GLNSYN-PWY . :INCOMING)) PREDECESSORS - (GLUTKIN-RXN GLUTAMIN-RXN) PREDECESSORS - (GLUTSEMIALDEHYDROG-RXN GLUTKIN-RXN) PREDECESSORS - (ORNITHINE-GLU-AMINOTRANSFORASE-RXN GLUTSEMIALDEHYDROG-RXN) PREDECESSORS - (ORNCARBAMTRANSFER-RXN ARGINASE-RXN) PREDECESSORS - (ORNCARBAMTRANSFER-RXN ORNITHINE-GLU-AMINOTRANSFORASE-RXN) PREDECESSORS - (ORNITHINE-GLU-AMINOTRANSFORASE-RXN SPONTPRO-RXN) PREDECESSORS - (SPONTPRO-RXN RXN-821) REACTION-LAYOUT - (RXN-821 (:LEFT-PRIMARIES PRO) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-DELTA1-PYRROLINE_5-CARBOXYLATE)) REACTION-LAYOUT - (GLUTSEMIALDEHYDROG-RXN (:LEFT-PRIMARIES L-GLUTAMATE_GAMMA-SEMIALDEHYDE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES L-GLUTAMATE-5-P)) REACTION-LAYOUT - (GLUTKIN-RXN (:LEFT-PRIMARIES GLT) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-GLUTAMATE-5-P)) REACTION-LAYOUT - (ORNCARBAMTRANSFER-RXN (:LEFT-PRIMARIES L-ORNITHINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-CITRULLINE)) REACTION-LAYOUT - (ORNITHINE-GLU-AMINOTRANSFORASE-RXN (:LEFT-PRIMARIES L-ORNITHINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES L-GLUTAMATE_GAMMA-SEMIALDEHYDE GLT)) REACTION-LAYOUT - (SPONTPRO-RXN (:LEFT-PRIMARIES L-GLUTAMATE_GAMMA-SEMIALDEHYDE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES L-DELTA1-PYRROLINE_5-CARBOXYLATE)) REACTION-LAYOUT - (ARGINASE-RXN (:LEFT-PRIMARIES ARG) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-ORNITHINE)) REACTION-LAYOUT - (GLUTAMIN-RXN (:LEFT-PRIMARIES GLN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLT)) REACTION-LIST - RXN-821 REACTION-LIST - GLUTSEMIALDEHYDROG-RXN REACTION-LIST - GLUTKIN-RXN REACTION-LIST - ORNCARBAMTRANSFER-RXN REACTION-LIST - ORNITHINE-GLU-AMINOTRANSFORASE-RXN REACTION-LIST - SPONTPRO-RXN REACTION-LIST - ARGINASE-RXN REACTION-LIST - GLUTAMIN-RXN // UNIQUE-ID - PWY-6120 TYPES - TYROSINE-SYN COMMON-NAME - tyrosine biosynthesis III CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - SRI CREDITS - |caspi| KEY-REACTIONS - CYCLOHEXADIENYL-DEHYDROGENASE-RXN PATHWAY-LINKS - (CHORISMATE ARO-PWY) PREDECESSORS - (CYCLOHEXADIENYL-DEHYDROGENASE-RXN PREPHENATE-TRANSAMINE-RXN) PREDECESSORS - (PREPHENATE-TRANSAMINE-RXN CHORISMATEMUT-RXN) PRIMARIES - (CYCLOHEXADIENYL-DEHYDROGENASE-RXN (CPD-659) (TYR)) PRIMARIES - (RXN-5682 (CPD-659) (TYR)) PRIMARIES - (RXN-5681 (CPD-659) (TYR)) PRIMARIES - (PREPHENATE-TRANSAMINE-RXN (PREPHENATE) (CPD-659)) PRIMARIES - (CARBOXYCYCLOHEXADIENYL-DEHYDRATASE-RXN (CPD-659) (PHE)) PRIMARIES - (CHORISMATEMUT-RXN (CHORISMATE) (PREPHENATE)) REACTION-LAYOUT - (CYCLOHEXADIENYL-DEHYDROGENASE-RXN (:LEFT-PRIMARIES CPD-659) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TYR)) REACTION-LAYOUT - (PREPHENATE-TRANSAMINE-RXN (:LEFT-PRIMARIES PREPHENATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-659)) REACTION-LAYOUT - (CHORISMATEMUT-RXN (:LEFT-PRIMARIES CHORISMATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PREPHENATE)) REACTION-LIST - CYCLOHEXADIENYL-DEHYDROGENASE-RXN REACTION-LIST - PREPHENATE-TRANSAMINE-RXN REACTION-LIST - CHORISMATEMUT-RXN // UNIQUE-ID - ASPARAGINE-BIOSYNTHESIS TYPES - ASPARAGINE-SYN COMMON-NAME - asparagine biosynthesis I CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |fulcher| PATHWAY-LINKS - (L-ASPARTATE ASPARTATESYN-PWY) PREDECESSORS - (ASNSYNB-RXN) PRIMARIES - (ASPAMINOTRANS-RXN (OXALACETIC_ACID) (L-ASPARTATE)) REACTION-LAYOUT - (ASNSYNB-RXN (:LEFT-PRIMARIES L-ASPARTATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ASN)) REACTION-LIST - ASNSYNB-RXN // UNIQUE-ID - ASPARTATESYN-PWY TYPES - ASPARTATE-SYN COMMON-NAME - aspartate biosynthesis CREDITS - O-18 CREDITS - |riley| CREDITS - |ingraham| CREDITS - O0-3 CREDITS - SRI CREDITS - |fulcher| IN-PATHWAY - THRESYN-PWY IN-PATHWAY - PWY-3001 PATHWAY-LINKS - (L-ASPARTATE PANTO-PWY |Amino-Acid-Biosynthesis| PYRIDNUCSYN-PWY PWY0-162 HOMOSERSYN-PWY) PREDECESSORS - (ASPAMINOTRANS-RXN) PRIMARIES - (ASPAMINOTRANS-RXN NIL (L-ASPARTATE)) REACTION-LAYOUT - (ASPAMINOTRANS-RXN (:LEFT-PRIMARIES L-ASPARTATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES OXALACETIC_ACID)) REACTION-LIST - ASPAMINOTRANS-RXN SUPER-PATHWAYS - THRESYN-PWY SUPER-PATHWAYS - PWY-3001 SYNONYMS - aspartate biosynthesis and degradation // UNIQUE-ID - PWY0-1021 TYPES - ALANINE-SYN COMMON-NAME - alanine biosynthesis III CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - O0-3 CREDITS - |ingraham| CREDITS - SRI CREDITS - |shearer| PREDECESSORS - (RXN0-308) PRIMARIES - (RXN0-308 (CYS) (L-ALPHA-ALANINE)) REACTION-LAYOUT - (RXN0-308 (:LEFT-PRIMARIES CYS) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-ALPHA-ALANINE)) REACTION-LIST - RXN0-308 // UNIQUE-ID - ALANINE-SYN2-PWY TYPES - ALANINE-SYN COMMON-NAME - alanine biosynthesis II CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - O0-3 CREDITS - |ingraham| CREDITS - SRI CREDITS - |shearer| PREDECESSORS - (ALANINE-AMINOTRANSFERASE-RXN) PRIMARIES - (ALANINE-AMINOTRANSFERASE-RXN NIL (L-ALPHA-ALANINE)) REACTION-LAYOUT - (ALANINE-AMINOTRANSFERASE-RXN (:LEFT-PRIMARIES L-ALPHA-ALANINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PYRUVATE)) REACTION-LIST - ALANINE-AMINOTRANSFERASE-RXN // UNIQUE-ID - PWY-5687 TYPES - PYR-NUC-SYN COMMON-NAME - pyrimidine ribonucleotides interconversion CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |hartmut| CREDITS - SRI CREDITS - |caspi| IN-PATHWAY - PWY0-162 PATHWAY-LINKS - (UMP PWY-5686) PREDECESSORS - (CTPSYN-RXN UDPKIN-RXN) PREDECESSORS - (UDPKIN-RXN UMPKI-RXN) PREDECESSORS - (CDPKIN-RXN CTPSYN-RXN) PRIMARIES - (OROPRIBTRANS-RXN (PRPP OROTATE) NIL) REACTION-LAYOUT - (CDPKIN-RXN (:LEFT-PRIMARIES CDP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CTP)) REACTION-LAYOUT - (CTPSYN-RXN (:LEFT-PRIMARIES UTP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CTP)) REACTION-LAYOUT - (UDPKIN-RXN (:LEFT-PRIMARIES UDP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UTP)) REACTION-LAYOUT - (UMPKI-RXN (:LEFT-PRIMARIES UMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP)) REACTION-LIST - CDPKIN-RXN REACTION-LIST - CTPSYN-RXN REACTION-LIST - UDPKIN-RXN REACTION-LIST - UMPKI-RXN SUPER-PATHWAYS - PWY0-162 SYNONYMS - pyrimidine biosynthesis // UNIQUE-ID - PWY0-163 TYPES - Pyrimidine-Nucleotide-Salvage COMMON-NAME - salvage pathways of pyrimidine ribonucleotides CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - |ingraham| CREDITS - O0-3 CREDITS - SRI CREDITS - |arnaud| PATHWAY-LINKS - (UMP PWY0-162) PREDECESSORS - (URKI-RXN CYTIDEAM2-RXN) PREDECESSORS - (URPHOS-RXN CYTIDEAM2-RXN) PREDECESSORS - (CYTIDINEKIN-RXN) PREDECESSORS - (CMPKI-RXN CYTIDINEKIN-RXN) PREDECESSORS - (CDPKIN-RXN CMPKI-RXN) PREDECESSORS - (URACIL-PRIBOSYLTRANS-RXN CYTDEAM-RXN) PREDECESSORS - (URACIL-PRIBOSYLTRANS-RXN URPHOS-RXN) REACTION-LAYOUT - (CYTIDINEKIN-RXN (:LEFT-PRIMARIES CYTIDINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CMP)) REACTION-LAYOUT - (URKI-RXN (:LEFT-PRIMARIES URIDINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UMP)) REACTION-LAYOUT - (CYTDEAM-RXN (:LEFT-PRIMARIES CYTOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES URACIL)) REACTION-LAYOUT - (CYTIDEAM2-RXN (:LEFT-PRIMARIES CYTIDINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES URIDINE)) REACTION-LAYOUT - (URPHOS-RXN (:LEFT-PRIMARIES URIDINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES URACIL)) REACTION-LAYOUT - (CMPKI-RXN (:LEFT-PRIMARIES CMP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CDP)) REACTION-LAYOUT - (CDPKIN-RXN (:LEFT-PRIMARIES CDP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CTP)) REACTION-LAYOUT - (URACIL-PRIBOSYLTRANS-RXN (:LEFT-PRIMARIES UMP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES URACIL)) REACTION-LIST - CYTIDINEKIN-RXN REACTION-LIST - URKI-RXN REACTION-LIST - CYTDEAM-RXN REACTION-LIST - CYTIDEAM2-RXN REACTION-LIST - URPHOS-RXN REACTION-LIST - CMPKI-RXN REACTION-LIST - CDPKIN-RXN REACTION-LIST - URACIL-PRIBOSYLTRANS-RXN SYNONYMS - pyrimidine ribonucleotide/ribonucleoside metabolism // UNIQUE-ID - PWY0-181 TYPES - Pyrimidine-Nucleotide-Salvage COMMON-NAME - salvage pathways of pyrimidine deoxyribonucleotides CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - |ingraham| CREDITS - O0-3 CREDITS - SRI CREDITS - |arnaud| PREDECESSORS - (THYKI-RXN THYM-PHOSPH-RXN) PREDECESSORS - (THYM-PHOSPH-RXN URA-PHOSPH-RXN) PREDECESSORS - (URA-PHOSPH-RXN CYTIDEAM-RXN) PREDECESSORS - (DURIDKI-RXN CYTIDEAM-RXN) REACTION-LAYOUT - (THYKI-RXN (:LEFT-PRIMARIES THYMIDINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TMP)) REACTION-LAYOUT - (THYM-PHOSPH-RXN (:LEFT-PRIMARIES THYMIDINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DEOXY-RIBOSE-1P)) REACTION-LAYOUT - (URA-PHOSPH-RXN (:LEFT-PRIMARIES DEOXYURIDINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DEOXY-RIBOSE-1P)) REACTION-LAYOUT - (DURIDKI-RXN (:LEFT-PRIMARIES DEOXYURIDINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DUMP)) REACTION-LAYOUT - (CYTIDEAM-RXN (:LEFT-PRIMARIES DEOXYCYTIDINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DEOXYURIDINE)) REACTION-LIST - THYKI-RXN REACTION-LIST - THYM-PHOSPH-RXN REACTION-LIST - URA-PHOSPH-RXN REACTION-LIST - DURIDKI-RXN REACTION-LIST - CYTIDEAM-RXN SYNONYMS - deoxypyrimidine nucleotide/nucleoside metabolism // UNIQUE-ID - PWY-5686 TYPES - Pyrimidine-De-Novo-Biosyn COMMON-NAME - uridine-5'-phosphate biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |hartmut| CREDITS - SRI CREDITS - |caspi| IN-PATHWAY - PWY0-162 PATHWAY-LINKS - (UMP PWY-5687) PATHWAY-LINKS - (PRPP (|FRPP-Biosynthesis| . :INCOMING)) PATHWAY-LINKS - (CARBAMOYL-P ARGININE-SYN) PREDECESSORS - (OROTPDECARB-RXN OROPRIBTRANS-RXN) PREDECESSORS - (OROPRIBTRANS-RXN DIHYDROOROTATE-DEHYDROGENASE-RXN) PREDECESSORS - (DIHYDROOROTATE-DEHYDROGENASE-RXN DIHYDROOROT-RXN) PREDECESSORS - (DIHYDROOROT-RXN ASPCARBTRANS-RXN) PREDECESSORS - (ASPCARBTRANS-RXN CARBPSYN-RXN) PREDECESSORS - (CARBPSYN-RXN) PRIMARIES - (OROPRIBTRANS-RXN (PRPP OROTATE) NIL) REACTION-LAYOUT - (OROTPDECARB-RXN (:LEFT-PRIMARIES OROTIDINE-5-PHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UMP)) REACTION-LAYOUT - (OROPRIBTRANS-RXN (:LEFT-PRIMARIES OROTIDINE-5-PHOSPHATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES OROTATE PRPP)) REACTION-LAYOUT - (DIHYDROOROTATE-DEHYDROGENASE-RXN (:LEFT-PRIMARIES DI-H-OROTATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OROTATE)) REACTION-LAYOUT - (DIHYDROOROT-RXN (:LEFT-PRIMARIES DI-H-OROTATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES CARBAMYUL-L-ASPARTATE)) REACTION-LAYOUT - (ASPCARBTRANS-RXN (:LEFT-PRIMARIES CARBAMOYL-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CARBAMYUL-L-ASPARTATE)) REACTION-LAYOUT - (CARBPSYN-RXN (:LEFT-PRIMARIES HCO3) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CARBAMOYL-P)) REACTION-LIST - OROTPDECARB-RXN REACTION-LIST - OROPRIBTRANS-RXN REACTION-LIST - DIHYDROOROTATE-DEHYDROGENASE-RXN REACTION-LIST - DIHYDROOROT-RXN REACTION-LIST - ASPCARBTRANS-RXN REACTION-LIST - CARBPSYN-RXN SUPER-PATHWAYS - PWY0-162 SYNONYMS - pyrimidine biosynthesis SYNONYMS - de novo biosynthesis of uridine-5'-phosphate SYNONYMS - de novo biosynthesis of uridine-5'-monophosphate // UNIQUE-ID - PWY-6124 TYPES - IMP-Biosynthesis COMMON-NAME - inosine-5'-phosphate biosynthesis II CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |caspi| IN-PATHWAY - PWY-841 PATHWAY-LINKS - (5-PHOSPHORIBOSYL-5-AMINOIMIDAZOLE (|AIR-Biosynthesis| . :INCOMING)) PREDECESSORS - (SAICARSYN-RXN AIRCARBOXY-RXN) PREDECESSORS - (AICARSYN-RXN SAICARSYN-RXN) PREDECESSORS - (AICARTRANSFORM-RXN AICARSYN-RXN) PREDECESSORS - (IMPCYCLOHYDROLASE-RXN AICARTRANSFORM-RXN) PRIMARIES - (AMPSYN-RXN (ADENYLOSUCC) (AMP)) REACTION-LAYOUT - (IMPCYCLOHYDROLASE-RXN (:LEFT-PRIMARIES IMP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PHOSPHORIBOSYL-FORMAMIDO-CARBOXAMIDE)) REACTION-LAYOUT - (AICARTRANSFORM-RXN (:LEFT-PRIMARIES AICAR) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHORIBOSYL-FORMAMIDO-CARBOXAMIDE)) REACTION-LAYOUT - (AICARSYN-RXN (:LEFT-PRIMARIES P-RIBOSYL-4-SUCCCARB-AMINOIMIDAZOLE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES AICAR)) REACTION-LAYOUT - (SAICARSYN-RXN (:LEFT-PRIMARIES PHOSPHORIBOSYL-CARBOXY-AMINOIMIDAZOLE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES P-RIBOSYL-4-SUCCCARB-AMINOIMIDAZOLE)) REACTION-LAYOUT - (AIRCARBOXY-RXN (:LEFT-PRIMARIES PHOSPHORIBOSYL-CARBOXY-AMINOIMIDAZOLE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 5-PHOSPHORIBOSYL-5-AMINOIMIDAZOLE)) REACTION-LIST - IMPCYCLOHYDROLASE-RXN REACTION-LIST - AICARTRANSFORM-RXN REACTION-LIST - AICARSYN-RXN REACTION-LIST - SAICARSYN-RXN REACTION-LIST - AIRCARBOXY-RXN SUPER-PATHWAYS - PWY-841 SYNONYMS - IMP biosynthesis II // UNIQUE-ID - PWY-6121 TYPES - AIR-Biosynthesis COMMON-NAME - 5-aminoimidazole ribonucleotide biosynthesis I CREDITS - SRI CREDITS - |caspi| IN-PATHWAY - PWY-6277 IN-PATHWAY - PWY-841 PATHWAY-LINKS - (PRPP PWY0-662) PATHWAY-LINKS - (5-PHOSPHORIBOSYL-5-AMINOIMIDAZOLE PWY-841) PREDECESSORS - (GLYRIBONUCSYN-RXN PRPPAMIDOTRANS-RXN) PREDECESSORS - (GART-RXN GLYRIBONUCSYN-RXN) PREDECESSORS - (FGAMSYN-RXN GART-RXN) PREDECESSORS - (AIRS-RXN FGAMSYN-RXN) PRIMARIES - (AMPSYN-RXN (ADENYLOSUCC) (AMP)) REACTION-LAYOUT - (AIRS-RXN (:LEFT-PRIMARIES 5-PHOSPHORIBOSYL-N-FORMYLGLYCINEAMIDINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-PHOSPHORIBOSYL-5-AMINOIMIDAZOLE)) REACTION-LAYOUT - (FGAMSYN-RXN (:LEFT-PRIMARIES 5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-PHOSPHORIBOSYL-N-FORMYLGLYCINEAMIDINE)) REACTION-LAYOUT - (GART-RXN (:LEFT-PRIMARIES 5-PHOSPHO-RIBOSYL-GLYCINEAMIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE)) REACTION-LAYOUT - (GLYRIBONUCSYN-RXN (:LEFT-PRIMARIES 5-P-BETA-D-RIBOSYL-AMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-PHOSPHO-RIBOSYL-GLYCINEAMIDE)) REACTION-LAYOUT - (PRPPAMIDOTRANS-RXN (:LEFT-PRIMARIES 5-P-BETA-D-RIBOSYL-AMINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PRPP)) REACTION-LIST - AIRS-RXN REACTION-LIST - FGAMSYN-RXN REACTION-LIST - GART-RXN REACTION-LIST - GLYRIBONUCSYN-RXN REACTION-LIST - PRPPAMIDOTRANS-RXN SUPER-PATHWAYS - PWY-841 SUPER-PATHWAYS - PWY-6277 // UNIQUE-ID - PWY-6122 TYPES - AIR-Biosynthesis COMMON-NAME - 5-aminoimidazole ribonucleotide biosynthesis II CITATIONS - :EV-COMP-AINF:3498595969:jaiswalp CREDITS - SRI CREDITS - |caspi| IN-PATHWAY - PWY-6277 PATHWAY-LINKS - (PRPP PWY0-662 PWY0-661) PATHWAY-LINKS - (5-PHOSPHORIBOSYL-5-AMINOIMIDAZOLE DENOVOPURINE2-PWY PWY-841 THISYN-PWY) PREDECESSORS - (FGAMSYN-RXN GARTRANSFORMYL2-RXN) PREDECESSORS - (GARTRANSFORMYL2-RXN GLYRIBONUCSYN-RXN) PREDECESSORS - (GLYRIBONUCSYN-RXN PRPPAMIDOTRANS-RXN) PREDECESSORS - (AIRS-RXN FGAMSYN-RXN) PRIMARIES - (AMPSYN-RXN (ADENYLOSUCC) (AMP)) REACTION-LAYOUT - (GARTRANSFORMYL2-RXN (:LEFT-PRIMARIES 5-PHOSPHO-RIBOSYL-GLYCINEAMIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE)) REACTION-LAYOUT - (AIRS-RXN (:LEFT-PRIMARIES 5-PHOSPHORIBOSYL-N-FORMYLGLYCINEAMIDINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-PHOSPHORIBOSYL-5-AMINOIMIDAZOLE)) REACTION-LAYOUT - (FGAMSYN-RXN (:LEFT-PRIMARIES 5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-PHOSPHORIBOSYL-N-FORMYLGLYCINEAMIDINE)) REACTION-LAYOUT - (GLYRIBONUCSYN-RXN (:LEFT-PRIMARIES 5-P-BETA-D-RIBOSYL-AMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 5-PHOSPHO-RIBOSYL-GLYCINEAMIDE)) REACTION-LAYOUT - (PRPPAMIDOTRANS-RXN (:LEFT-PRIMARIES 5-P-BETA-D-RIBOSYL-AMINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PRPP)) REACTION-LIST - GARTRANSFORMYL2-RXN REACTION-LIST - AIRS-RXN REACTION-LIST - FGAMSYN-RXN REACTION-LIST - GLYRIBONUCSYN-RXN REACTION-LIST - PRPPAMIDOTRANS-RXN // UNIQUE-ID - PWY0-662 TYPES - PRPP-Biosynthesis COMMON-NAME - PRPP biosynthesis I CITATIONS - :EV-COMP-AINF:3497824359:liya PREDECESSORS - (PRPPSYN-RXN) REACTION-LAYOUT - (PRPPSYN-RXN (:LEFT-PRIMARIES RIBOSE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PRPP)) REACTION-LIST - PRPPSYN-RXN SYNONYMS - 5-phosphoribosyl 1-pyrophosphate biosynthesis // UNIQUE-ID - TRESYN-PWY TYPES - Trehalose-biosynthesis COMMON-NAME - trehalose biosynthesis I CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |caspi| CREDITS - O-18 CREDITS - |riley| PATHWAY-LINKS - (TREHALOSE PWY0-1182) PREDECESSORS - (TREHALOSEPHOSPHA-RXN TREHALOSE6PSYN-RXN) REACTION-LAYOUT - (TREHALOSEPHOSPHA-RXN (:LEFT-PRIMARIES TREHALOSE-6P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TREHALOSE)) REACTION-LAYOUT - (TREHALOSE6PSYN-RXN (:LEFT-PRIMARIES ALPHA-GLC-6-P UDP-GLUCOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TREHALOSE-6P)) REACTION-LIST - TREHALOSEPHOSPHA-RXN REACTION-LIST - TREHALOSE6PSYN-RXN SYNONYMS - trehalose biosynthesis // UNIQUE-ID - TRNA-CHARGING-PWY TYPES - Metabolic-Clusters TYPES - Aminoacyl-tRNAs-Charging COMMON-NAME - tRNA charging pathway CITATIONS - :EV-COMP-AINF:3497824359:liya REACTION-LAYOUT - (GLYCINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES GLY |GLY-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-GLY-tRNAs|)) REACTION-LAYOUT - (HISTIDINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES HIS |HIS-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-HIS-tRNAs|)) REACTION-LAYOUT - (LYSINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES LYS |LYS-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-LYS-tRNAs|)) REACTION-LAYOUT - (METHIONINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES MET |MET-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-MET-tRNAs|)) REACTION-LAYOUT - (PHENYLALANINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES PHE |PHE-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-PHE-tRNAs|)) REACTION-LAYOUT - (PROLINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES |PRO-tRNAs| PRO) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-PRO-tRNAs|)) REACTION-LAYOUT - (SERINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES SER |SER-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-SER-tRNAs|)) REACTION-LAYOUT - (THREONINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES THR |THR-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-THR-tRNAs|)) REACTION-LAYOUT - (TRYPTOPHAN--TRNA-LIGASE-RXN (:LEFT-PRIMARIES TRP |TRP-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-TRP-tRNAs|)) REACTION-LAYOUT - (TYROSINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES |TYR-tRNAs| TYR) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-TYR-tRNAs|)) REACTION-LAYOUT - (ASPARTATE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES L-ASPARTATE |ASP-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-ASP-tRNAs|)) REACTION-LAYOUT - (ASPARAGINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES ASN |ASN-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-ASN-tRNAs|)) REACTION-LAYOUT - (ALANINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES L-ALPHA-ALANINE |ALA-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-ALA-tRNAs|)) REACTION-LAYOUT - (VALINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES VAL |VAL-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-VAL-tRNAs|)) REACTION-LAYOUT - (LEUCINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES |LEU-tRNAs| LEU) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-LEU-tRNAs|)) REACTION-LAYOUT - (ISOLEUCINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES ILE |ILE-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-ILE-tRNAs|)) REACTION-LAYOUT - (GLURS-RXN (:LEFT-PRIMARIES GLT |GLT-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-GLT-tRNAs|)) REACTION-LAYOUT - (GLUTAMINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES GLN |GLN-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-GLN-tRNAs|)) REACTION-LAYOUT - (CYSTEINE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES CYS |CYS-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-CYS-tRNAs|)) REACTION-LAYOUT - (ARGININE--TRNA-LIGASE-RXN (:LEFT-PRIMARIES ARG |ARG-tRNAs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Charged-ARG-tRNAs|)) REACTION-LIST - GLYCINE--TRNA-LIGASE-RXN REACTION-LIST - HISTIDINE--TRNA-LIGASE-RXN REACTION-LIST - LYSINE--TRNA-LIGASE-RXN REACTION-LIST - METHIONINE--TRNA-LIGASE-RXN REACTION-LIST - PHENYLALANINE--TRNA-LIGASE-RXN REACTION-LIST - PROLINE--TRNA-LIGASE-RXN REACTION-LIST - SERINE--TRNA-LIGASE-RXN REACTION-LIST - THREONINE--TRNA-LIGASE-RXN REACTION-LIST - TRYPTOPHAN--TRNA-LIGASE-RXN REACTION-LIST - TYROSINE--TRNA-LIGASE-RXN REACTION-LIST - ASPARTATE--TRNA-LIGASE-RXN REACTION-LIST - ASPARAGINE--TRNA-LIGASE-RXN REACTION-LIST - ALANINE--TRNA-LIGASE-RXN REACTION-LIST - VALINE--TRNA-LIGASE-RXN REACTION-LIST - LEUCINE--TRNA-LIGASE-RXN REACTION-LIST - ISOLEUCINE--TRNA-LIGASE-RXN REACTION-LIST - GLURS-RXN REACTION-LIST - GLUTAMINE--TRNA-LIGASE-RXN REACTION-LIST - CYSTEINE--TRNA-LIGASE-RXN REACTION-LIST - ARGININE--TRNA-LIGASE-RXN // UNIQUE-ID - PWY-5337 TYPES - Oligosaccharides-Biosynthesis COMMON-NAME - stachyose biosynthesis CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |tissier| PREDECESSORS - (2.4.1.67-RXN 2.4.1.82-RXN) PREDECESSORS - (2.4.1.82-RXN 2.4.1.123-RXN) PREDECESSORS - (2.4.1.123-RXN) PRIMARIES - (2.4.1.67-RXN (CPD-1099) (CPD-170)) PRIMARIES - (2.4.1.82-RXN (CPD-458) (CPD-1099)) PRIMARIES - (2.4.1.123-RXN (UDP-GALACTOSE) (CPD-458)) REACTION-LAYOUT - (2.4.1.67-RXN (:LEFT-PRIMARIES CPD-1099 CPD-458) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-170)) REACTION-LAYOUT - (2.4.1.82-RXN (:LEFT-PRIMARIES CPD-458) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-1099)) REACTION-LAYOUT - (2.4.1.123-RXN (:LEFT-PRIMARIES UDP-GALACTOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-458)) REACTION-LIST - 2.4.1.67-RXN REACTION-LIST - 2.4.1.82-RXN REACTION-LIST - 2.4.1.123-RXN SYNONYMS - raffinose biosynthesis // UNIQUE-ID - MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS TYPES - Oligosaccharides-Biosynthesis COMMON-NAME - dolichyl-diphosphooligosaccharide biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - SRI CREDITS - |fulcher| PREDECESSORS - (RXN-5471 RXN-5470) PREDECESSORS - (RXN-5469 RXN-5468) PREDECESSORS - (RXN-5467 RXN-5466) PREDECESSORS - (RXN-5465 RXN-5464) PREDECESSORS - (RXN-5463 RXN-5462) PREDECESSORS - (RXN-5462 2.4.1.142-RXN) PREDECESSORS - (2.4.1.141-RXN 2.7.8.15-RXN) PREDECESSORS - (2.4.1.142-RXN 2.4.1.141-RXN) PREDECESSORS - (RXN-5464 RXN-5463) PREDECESSORS - (RXN-5466 RXN-5465) PREDECESSORS - (RXN-5468 RXN-5467) PREDECESSORS - (RXN-5470 RXN-5469) PREDECESSORS - (RXN-5472 RXN-5471) PRIMARIES - (DOLICHOL-KINASE-RXN (DOLICHOL) (DOLICHOLP)) PRIMARIES - (2.4.1.117-RXN (DOLICHOLP) (CPD-166)) PRIMARIES - (2.4.1.83-RXN (DOLICHOLP) (CPD-171)) PRIMARIES - (RXN-5472 (CPD-5170) (OLIGOSACCHARIDE-DIPHOSPHODOLICHOL)) PRIMARIES - (RXN-5471 (CPD-5169) (CPD-5170)) PRIMARIES - (RXN-5470 (CPD-5168) (CPD-5169)) PRIMARIES - (RXN-5469 (CPD-5167) (CPD-5168)) PRIMARIES - (RXN-5468 (CPD-5166) (CPD-5167)) PRIMARIES - (RXN-5467 (CPD-5165) (CPD-5166)) PRIMARIES - (RXN-5466 (CPD-5164) (CPD-5165)) PRIMARIES - (RXN-5465 (CPD-5163) (CPD-5164)) PRIMARIES - (RXN-5464 (CPD-5162) (CPD-5163)) PRIMARIES - (RXN-5463 (CPD-5161) (CPD-5162)) PRIMARIES - (RXN-5462 (ALPHA-D-MANNOSYLCHITOBIO) (CPD-5161)) PRIMARIES - (2.4.1.142-RXN NIL (ALPHA-D-MANNOSYLCHITOBIO)) PRIMARIES - (2.7.8.15-RXN (DOLICHOLP)) REACTION-LAYOUT - (2.4.1.117-RXN (:LEFT-PRIMARIES DOLICHOLP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-166)) REACTION-LAYOUT - (2.4.1.83-RXN (:LEFT-PRIMARIES DOLICHOLP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-171)) REACTION-LAYOUT - (RXN-5472 (:LEFT-PRIMARIES CPD-166 CPD-5170) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DOLICHOLP OLIGOSACCHARIDE-DIPHOSPHODOLICHOL)) REACTION-LAYOUT - (RXN-5471 (:LEFT-PRIMARIES CPD-166 CPD-5169) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DOLICHOLP CPD-5170)) REACTION-LAYOUT - (RXN-5470 (:LEFT-PRIMARIES CPD-166 CPD-5168) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DOLICHOLP CPD-5169)) REACTION-LAYOUT - (RXN-5469 (:LEFT-PRIMARIES CPD-171 CPD-5167) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DOLICHOLP CPD-5168)) REACTION-LAYOUT - (RXN-5468 (:LEFT-PRIMARIES CPD-171 CPD-5166) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DOLICHOLP CPD-5167)) REACTION-LAYOUT - (RXN-5467 (:LEFT-PRIMARIES CPD-171 CPD-5165) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DOLICHOLP CPD-5166)) REACTION-LAYOUT - (RXN-5466 (:LEFT-PRIMARIES CPD-171 CPD-5164) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DOLICHOLP CPD-5165)) REACTION-LAYOUT - (RXN-5465 (:LEFT-PRIMARIES CPD-5163) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-5164)) REACTION-LAYOUT - (RXN-5464 (:LEFT-PRIMARIES CPD-5162) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-5163)) REACTION-LAYOUT - (RXN-5462 (:LEFT-PRIMARIES ALPHA-D-MANNOSYLCHITOBIO) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-5161)) REACTION-LAYOUT - (RXN-5463 (:LEFT-PRIMARIES CPD-5161) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-5162)) REACTION-LAYOUT - (2.4.1.142-RXN (:LEFT-PRIMARIES NN-DIACETYLCHITOBIOSYLDIPHOSPHODOLICHO) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ALPHA-D-MANNOSYLCHITOBIO)) REACTION-LAYOUT - (2.4.1.141-RXN (:LEFT-PRIMARIES CPD-190) (:DIRECTION :L2R) (:RIGHT-PRIMARIES NN-DIACETYLCHITOBIOSYLDIPHOSPHODOLICHO)) REACTION-LAYOUT - (2.7.8.15-RXN (:LEFT-PRIMARIES DOLICHOLP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-190)) REACTION-LIST - 2.4.1.117-RXN REACTION-LIST - 2.4.1.83-RXN REACTION-LIST - RXN-5472 REACTION-LIST - RXN-5471 REACTION-LIST - RXN-5470 REACTION-LIST - RXN-5469 REACTION-LIST - RXN-5468 REACTION-LIST - RXN-5467 REACTION-LIST - RXN-5466 REACTION-LIST - RXN-5465 REACTION-LIST - RXN-5464 REACTION-LIST - RXN-5462 REACTION-LIST - RXN-5463 REACTION-LIST - 2.4.1.142-RXN REACTION-LIST - 2.4.1.141-RXN REACTION-LIST - 2.7.8.15-RXN SYNONYMS - mannosyl-chito-dolichol biosynthesis // UNIQUE-ID - PWY-5111 TYPES - CMP-KDO-Biosynthesis TYPES - SUGAR-NUCLEOTIDES COMMON-NAME - CMP-KDO biosynthesis II (from D-arabinose 5-phosphate) CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |tissier| PREDECESSORS - (KDO-8PSYNTH-RXN) PREDECESSORS - (KDO-8PPHOSPHAT-RXN KDO-8PSYNTH-RXN) PREDECESSORS - (CPM-KDOSYNTH-RXN KDO-8PPHOSPHAT-RXN) PRIMARIES - (KDO-8PSYNTH-RXN (ARABINOSE-5P) (KDO-8P)) PRIMARIES - (CPM-KDOSYNTH-RXN (KDO) (CMP-KDO)) PRIMARIES - (KDO-8PPHOSPHAT-RXN (KDO-8P) (KDO)) REACTION-LAYOUT - (CPM-KDOSYNTH-RXN (:LEFT-PRIMARIES KDO) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CMP-KDO)) REACTION-LAYOUT - (KDO-8PPHOSPHAT-RXN (:LEFT-PRIMARIES KDO-8P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES KDO)) REACTION-LAYOUT - (KDO-8PSYNTH-RXN (:LEFT-PRIMARIES ARABINOSE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES KDO-8P)) REACTION-LIST - CPM-KDOSYNTH-RXN REACTION-LIST - KDO-8PPHOSPHAT-RXN REACTION-LIST - KDO-8PSYNTH-RXN SYNONYMS - CMP-3-deoxy-D-manno-octulosonate biosynthesis // UNIQUE-ID - PWY-1269 TYPES - CMP-KDO-Biosynthesis TYPES - SUGAR-NUCLEOTIDES COMMON-NAME - CMP-KDO biosynthesis I CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |caspi| PREDECESSORS - (KDO-8PSYNTH-RXN DARAB5PISOM-RXN) PREDECESSORS - (KDO-8PPHOSPHAT-RXN KDO-8PSYNTH-RXN) PREDECESSORS - (CPM-KDOSYNTH-RXN KDO-8PPHOSPHAT-RXN) PRIMARIES - (KDOTRANS2-RXN (KDO-LIPID-IVA) (KDO2-LIPID-IVA)) REACTION-LAYOUT - (DARAB5PISOM-RXN (:LEFT-PRIMARIES ARABINOSE-5P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES RIBULOSE-5P)) REACTION-LAYOUT - (KDO-8PSYNTH-RXN (:LEFT-PRIMARIES ARABINOSE-5P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES KDO-8P)) REACTION-LAYOUT - (KDO-8PPHOSPHAT-RXN (:LEFT-PRIMARIES KDO-8P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES KDO)) REACTION-LAYOUT - (CPM-KDOSYNTH-RXN (:LEFT-PRIMARIES KDO) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CMP-KDO)) REACTION-LIST - DARAB5PISOM-RXN REACTION-LIST - KDO-8PSYNTH-RXN REACTION-LIST - KDO-8PPHOSPHAT-RXN REACTION-LIST - CPM-KDOSYNTH-RXN SYNONYMS - 3-deoxy-D-manno-octulosonate biosynthesis // UNIQUE-ID - PWY-622 TYPES - GLYCOGEN-BIOSYN COMMON-NAME - starch biosynthesis CITATIONS - :EV-COMP-AINF:3497824357:liya PATHWAY-LINKS - (FRUCTOSE-6P CALVIN-PWY) PATHWAY-LINKS - (GLC-6-P PWY-621) PATHWAY-LINKS - (GLC-1-P PWY-621) PATHWAY-LINKS - (G3P CALVIN-PWY) POLYMERIZATION-LINKS - (|1-4-alpha-D-Glucan| GLYCOGENSYN-RXN GLYCOGENSYN-RXN) PREDECESSORS - (GLUC1PADENYLTRANS-RXN PHOSPHOGLUCMUT-RXN) PREDECESSORS - (GLYCOGENSYN-RXN GLUC1PADENYLTRANS-RXN) PREDECESSORS - (PHOSPHOGLUCMUT-RXN GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN) PREDECESSORS - (GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN PGLUCISOM-RXN) PREDECESSORS - (RXN-7710 GLYCOGENSYN-RXN) PRIMARIES - (GLYCOGENSYN-RXN (|1-4-alpha-D-Glucan|) (|1-4-alpha-D-Glucan|)) REACTION-LAYOUT - (RXN-7710 (:LEFT-PRIMARIES |1-4-alpha-D-Glucan|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Starch|)) REACTION-LAYOUT - (GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN (:LEFT-PRIMARIES ALPHA-GLC-6-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GLC-6-P)) REACTION-LAYOUT - (GLYCOGENSYN-RXN (:LEFT-PRIMARIES |1-4-alpha-D-Glucan| ADP-D-GLUCOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |1-4-alpha-D-Glucan|)) REACTION-LAYOUT - (GLUC1PADENYLTRANS-RXN (:LEFT-PRIMARIES GLC-1-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ADP-D-GLUCOSE)) REACTION-LAYOUT - (PHOSPHOGLUCMUT-RXN (:LEFT-PRIMARIES GLC-1-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES ALPHA-GLC-6-P)) REACTION-LAYOUT - (PGLUCISOM-RXN (:LEFT-PRIMARIES GLC-6-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES FRUCTOSE-6P)) REACTION-LIST - RXN-7710 REACTION-LIST - GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN REACTION-LIST - GLYCOGENSYN-RXN REACTION-LIST - GLUC1PADENYLTRANS-RXN REACTION-LIST - PHOSPHOGLUCMUT-RXN REACTION-LIST - PGLUCISOM-RXN // UNIQUE-ID - PWY-822 TYPES - CARBO-BIOSYNTHESIS COMMON-NAME - fructan biosynthesis CITATIONS - :EV-COMP-AINF:3497824358:liya PREDECESSORS - (RXN-1801 RXN-1781) PREDECESSORS - (RXN-1802 RXN-1781) PRIMARIES - (RXN-1804 (1-KESTOTRIOSE SUCROSE) (BIFURCOSE)) PRIMARIES - (RXN-1803 (SUCROSE) (6-KESTOSE)) PRIMARIES - (RXN-1802 (1-KESTOTRIOSE) (6G-KESTOTETRAOSE)) PRIMARIES - (RXN-1781 (SUCROSE) (1-KESTOTRIOSE)) PRIMARIES - (RXN-1801 (1-KESTOTRIOSE) (NYSTOSE)) REACTION-LAYOUT - (RXN-1803 (:LEFT-PRIMARIES SUCROSE SUCROSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 6-KESTOSE)) REACTION-LAYOUT - (RXN-1804 (:LEFT-PRIMARIES SUCROSE 1-KESTOTRIOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES BIFURCOSE)) REACTION-LAYOUT - (RXN-1802 (:LEFT-PRIMARIES SUCROSE 1-KESTOTRIOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SUCROSE 6G-KESTOTETRAOSE)) REACTION-LAYOUT - (RXN-1801 (:LEFT-PRIMARIES 1-KESTOTRIOSE 1-KESTOTRIOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SUCROSE NYSTOSE)) REACTION-LAYOUT - (RXN-1781 (:LEFT-PRIMARIES SUCROSE SUCROSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 1-KESTOTRIOSE)) REACTION-LIST - RXN-1803 REACTION-LIST - RXN-1804 REACTION-LIST - RXN-1802 REACTION-LIST - RXN-1801 REACTION-LIST - RXN-1781 // UNIQUE-ID - SUCSYN-PWY TYPES - CARBO-BIOSYNTHESIS COMMON-NAME - sucrose biosynthesis CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - SRI CREDITS - |Iourovitski| PREDECESSORS - (PHOSPHOGLUCMUT-RXN GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN) PREDECESSORS - (SUCROSE-PHOSPHATASE-RXN SUCROSE-PHOSPHATE-SYNTHASE-RXN) PREDECESSORS - (SUCROSE-PHOSPHATE-SYNTHASE-RXN GLUC1PURIDYLTRANS-RXN) PREDECESSORS - (GLUC1PURIDYLTRANS-RXN PHOSPHOGLUCMUT-RXN) REACTION-LAYOUT - (GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN (:LEFT-PRIMARIES ALPHA-GLC-6-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GLC-6-P)) REACTION-LAYOUT - (SUCROSE-PHOSPHATASE-RXN (:LEFT-PRIMARIES SUCROSE-6P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SUCROSE)) REACTION-LAYOUT - (SUCROSE-PHOSPHATE-SYNTHASE-RXN (:LEFT-PRIMARIES UDP-GLUCOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES SUCROSE-6P)) REACTION-LAYOUT - (GLUC1PURIDYLTRANS-RXN (:LEFT-PRIMARIES GLC-1-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP-GLUCOSE)) REACTION-LAYOUT - (PHOSPHOGLUCMUT-RXN (:LEFT-PRIMARIES GLC-1-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES ALPHA-GLC-6-P)) REACTION-LIST - GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN REACTION-LIST - SUCROSE-PHOSPHATASE-RXN REACTION-LIST - SUCROSE-PHOSPHATE-SYNTHASE-RXN REACTION-LIST - GLUC1PURIDYLTRANS-RXN REACTION-LIST - PHOSPHOGLUCMUT-RXN // UNIQUE-ID - PWY-3881 TYPES - Sugar-Alcohols-Biosynthesis COMMON-NAME - mannitol biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya PREDECESSORS - (MANNOSE-6-PHOSPHATE-6-REDUCTASE-RXN MANNPISOM-RXN) PREDECESSORS - (MANNPISOM-RXN) PREDECESSORS - (MANNITOL-1-PHOSPHATASE-RXN MANNOSE-6-PHOSPHATE-6-REDUCTASE-RXN) PRIMARIES - (MANNPISOM-RXN (FRUCTOSE-6P) (MANNOSE-6P)) PRIMARIES - (MANNOSE-6-PHOSPHATE-6-REDUCTASE-RXN (MANNOSE-6P) (MANNITOL-1P)) PRIMARIES - (MANNITOL-1-PHOSPHATASE-RXN (MANNITOL-1P) (MANNITOL)) REACTION-LAYOUT - (MANNPISOM-RXN (:LEFT-PRIMARIES MANNOSE-6P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES FRUCTOSE-6P)) REACTION-LAYOUT - (MANNOSE-6-PHOSPHATE-6-REDUCTASE-RXN (:LEFT-PRIMARIES MANNITOL-1P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES MANNOSE-6P)) REACTION-LAYOUT - (MANNITOL-1-PHOSPHATASE-RXN (:LEFT-PRIMARIES MANNITOL-1P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MANNITOL)) REACTION-LIST - MANNPISOM-RXN REACTION-LIST - MANNOSE-6-PHOSPHATE-6-REDUCTASE-RXN REACTION-LIST - MANNITOL-1-PHOSPHATASE-RXN // UNIQUE-ID - GLUCONEO-PWY TYPES - Gluconeogenesis COMMON-NAME - gluconeogenesis I CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - O-18 CREDITS - |riley| PREDECESSORS - (PEPCARBOX-RXN MALATE-DEH-RXN) PREDECESSORS - (2PGADEHYDRAT-RXN PEPCARBOX-RXN) PREDECESSORS - (PGLUCISOM-RXN F16BDEPHOS-RXN) PREDECESSORS - (F16BDEPHOS-RXN F16ALDOLASE-RXN) PREDECESSORS - (F16ALDOLASE-RXN GAPOXNPHOSPHN-RXN) PREDECESSORS - (GAPOXNPHOSPHN-RXN PHOSGLYPHOS-RXN) PREDECESSORS - (PHOSGLYPHOS-RXN 3PGAREARR-RXN) PREDECESSORS - (3PGAREARR-RXN 2PGADEHYDRAT-RXN) PREDECESSORS - (2PGADEHYDRAT-RXN PEPCARBOXYKIN-RXN) PREDECESSORS - (PEPCARBOXYKIN-RXN MALATE-DEH-RXN) PREDECESSORS - (2PGADEHYDRAT-RXN PEPSYNTH-RXN) PREDECESSORS - (PEPSYNTH-RXN MALIC-NAD-RXN) PREDECESSORS - (PEPSYNTH-RXN MALIC-NADP-RXN) PREDECESSORS - (MALIC-NAD-RXN) PREDECESSORS - (MALIC-NADP-RXN) PRIMARIES - (F16ALDOLASE-RXN (DIHYDROXY-ACETONE-PHOSPHATE GAP) NIL) REACTION-LAYOUT - (MALATE-DEH-RXN (:LEFT-PRIMARIES MAL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OXALACETIC_ACID)) REACTION-LAYOUT - (PEPCARBOX-RXN (:LEFT-PRIMARIES OXALACETIC_ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE)) REACTION-LAYOUT - (MALIC-NADP-RXN (:LEFT-PRIMARIES MAL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PYRUVATE)) REACTION-LAYOUT - (MALIC-NAD-RXN (:LEFT-PRIMARIES MAL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PYRUVATE)) REACTION-LAYOUT - (PEPSYNTH-RXN (:LEFT-PRIMARIES PYRUVATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE)) REACTION-LAYOUT - (PEPCARBOXYKIN-RXN (:LEFT-PRIMARIES OXALACETIC_ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE)) REACTION-LAYOUT - (2PGADEHYDRAT-RXN (:LEFT-PRIMARIES 2-PG) (:DIRECTION :R2L) (:RIGHT-PRIMARIES PHOSPHO-ENOL-PYRUVATE)) REACTION-LAYOUT - (3PGAREARR-RXN (:LEFT-PRIMARIES G3P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 2-PG)) REACTION-LAYOUT - (PHOSGLYPHOS-RXN (:LEFT-PRIMARIES G3P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DPG)) REACTION-LAYOUT - (GAPOXNPHOSPHN-RXN (:LEFT-PRIMARIES GAP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DPG)) REACTION-LAYOUT - (F16ALDOLASE-RXN (:LEFT-PRIMARIES FRUCTOSE-16-DIPHOSPHATE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GAP DIHYDROXY-ACETONE-PHOSPHATE)) REACTION-LAYOUT - (F16BDEPHOS-RXN (:LEFT-PRIMARIES FRUCTOSE-16-DIPHOSPHATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-6P)) REACTION-LAYOUT - (PGLUCISOM-RXN (:LEFT-PRIMARIES GLC-6-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES FRUCTOSE-6P)) REACTION-LIST - MALATE-DEH-RXN REACTION-LIST - PEPCARBOX-RXN REACTION-LIST - MALIC-NADP-RXN REACTION-LIST - MALIC-NAD-RXN REACTION-LIST - PEPSYNTH-RXN REACTION-LIST - PEPCARBOXYKIN-RXN REACTION-LIST - 2PGADEHYDRAT-RXN REACTION-LIST - 3PGAREARR-RXN REACTION-LIST - PHOSGLYPHOS-RXN REACTION-LIST - GAPOXNPHOSPHN-RXN REACTION-LIST - F16ALDOLASE-RXN REACTION-LIST - F16BDEPHOS-RXN REACTION-LIST - PGLUCISOM-RXN // UNIQUE-ID - PWY-5661 TYPES - SUGAR-NUCLEOTIDES COMMON-NAME - GDP-glucose biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - SRI CREDITS - |caspi| PREDECESSORS - (2.7.7.34-RXN PHOSPHOGLUCMUT-RXN) PREDECESSORS - (PHOSPHOGLUCMUT-RXN GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN) PREDECESSORS - (GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN GLUCOKIN-RXN) REACTION-LAYOUT - (GLUCOKIN-RXN (:LEFT-PRIMARIES GLC) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GLC-6-P)) REACTION-LAYOUT - (2.7.7.34-RXN (:LEFT-PRIMARIES GLC-1-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GDP-D-GLUCOSE)) REACTION-LAYOUT - (PHOSPHOGLUCMUT-RXN (:LEFT-PRIMARIES GLC-1-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES ALPHA-GLC-6-P)) REACTION-LAYOUT - (GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN (:LEFT-PRIMARIES ALPHA-GLC-6-P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GLC-6-P)) REACTION-LIST - GLUCOKIN-RXN REACTION-LIST - 2.7.7.34-RXN REACTION-LIST - PHOSPHOGLUCMUT-RXN REACTION-LIST - GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN // UNIQUE-ID - PWY-82 TYPES - SUGAR-NUCLEOTIDES COMMON-NAME - UDP-L-arabinose biosynthesis II (from L-arabinose) CITATIONS - :EV-COMP-AINF:3497824357:liya PREDECESSORS - (RXN-7401 L-ARABINOKINASE-RXN) PREDECESSORS - (L-ARABINOKINASE-RXN) PRIMARIES - (L-ARABINOKINASE-RXN (L-ARABINOSE) (CPD-1825)) PRIMARIES - (RXN-7401 (CPD-1825) (UDP-L-ARABINOSE)) PRIMARIES - (RXN-7381 (CPD-1825) (UDP-L-ARABINOSE)) REACTION-LAYOUT - (L-ARABINOKINASE-RXN (:LEFT-PRIMARIES L-ARABINOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-1825)) REACTION-LAYOUT - (RXN-7401 (:LEFT-PRIMARIES CPD-1825) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP-L-ARABINOSE)) REACTION-LIST - L-ARABINOKINASE-RXN REACTION-LIST - RXN-7401 SYNONYMS - UDP-L-arabinose biosynthesis (salvage pathway) // UNIQUE-ID - PWY-63 TYPES - SUGAR-NUCLEOTIDES COMMON-NAME - UDP-L-arabinose biosynthesis I (from UDP-xylose) CITATIONS - :EV-COMP-AINF:3497824358:liya PATHWAY-LINKS - (UDP-D-XYLOSE PWY-4821) PREDECESSORS - (UDP-ARABINOSE-4-EPIMERASE-RXN) PRIMARIES - (UDP-ARABINOSE-4-EPIMERASE-RXN (UDP-D-XYLOSE) (UDP-L-ARABINOSE)) REACTION-LAYOUT - (UDP-ARABINOSE-4-EPIMERASE-RXN (:LEFT-PRIMARIES UDP-L-ARABINOSE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES UDP-D-XYLOSE)) REACTION-LIST - UDP-ARABINOSE-4-EPIMERASE-RXN SYNONYMS - UDP-L-arabinose biosynthesis (de novo synthesis) // UNIQUE-ID - PWY-4861 TYPES - SUGAR-NUCLEOTIDES COMMON-NAME - UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate) CITATIONS - :EV-COMP-AINF:3497824358:liya PRIMARIES - (UDP-GLUCURONATE-4-EPIMERASE-RXN (UDP-GLUCURONATE) (UDP-D-GALACTURONATE)) REACTION-LAYOUT - (UDP-GLUCURONATE-4-EPIMERASE-RXN (:LEFT-PRIMARIES UDP-GLUCURONATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP-D-GALACTURONATE)) REACTION-LIST - UDP-GLUCURONATE-4-EPIMERASE-RXN SYNONYMS - UDP-galacturonic acid biosynthesis SYNONYMS - UDP-GalA biosynthesis // UNIQUE-ID - PWY-66 TYPES - SUGAR-NUCLEOTIDES COMMON-NAME - GDP-L-fucose biosynthesis I (from GDP-D-mannose) CITATIONS - :EV-COMP-AINF:3497824357:liya KEY-REACTIONS - 1.1.1.271-RXN PATHWAY-LINKS - (GDP-MANNOSE (PWY-5659 . :INCOMING)) PREDECESSORS - (1.1.1.271-RXN GDPMANDEHYDRA-RXN) PREDECESSORS - (GDPMANDEHYDRA-RXN) PRIMARIES - (1.1.1.271-RXN (GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE) (GUANOSINE_DIPHOSPHATE_FUCOSE)) PRIMARIES - (GDPMANDEHYDRA-RXN (GDP-MANNOSE) (GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE)) REACTION-LAYOUT - (1.1.1.271-RXN (:LEFT-PRIMARIES GUANOSINE_DIPHOSPHATE_FUCOSE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE)) REACTION-LAYOUT - (GDPMANDEHYDRA-RXN (:LEFT-PRIMARIES GDP-MANNOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE)) REACTION-LIST - 1.1.1.271-RXN REACTION-LIST - GDPMANDEHYDRA-RXN SYNONYMS - GDP-L-fucose biosynthesis I (de novo synthesis) // UNIQUE-ID - PWY-4821 TYPES - SUGAR-NUCLEOTIDES COMMON-NAME - UDP-D-xylose biosynthesis CITATIONS - :EV-COMP-AINF:3497824358:liya PATHWAY-LINKS - (UDP-GLUCURONATE PWY-4841) PREDECESSORS - (UDP-GLUCURONATE-DECARBOXYLASE-RXN UGD-RXN) PREDECESSORS - (UGD-RXN) PRIMARIES - (UDP-GLUCURONATE-DECARBOXYLASE-RXN (UDP-GLUCURONATE) (UDP-D-XYLOSE)) PRIMARIES - (UGD-RXN (UDP-GLUCOSE) (UDP-GLUCURONATE)) REACTION-LAYOUT - (UDP-GLUCURONATE-DECARBOXYLASE-RXN (:LEFT-PRIMARIES UDP-GLUCURONATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP-D-XYLOSE)) REACTION-LAYOUT - (UGD-RXN (:LEFT-PRIMARIES UDP-GLUCOSE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES UDP-GLUCURONATE)) REACTION-LIST - UDP-GLUCURONATE-DECARBOXYLASE-RXN REACTION-LIST - UGD-RXN SYNONYMS - UDP-xylose biosynthesis SYNONYMS - UDPXyl biosynthesis SYNONYMS - UDP-glucuronate biosynthesis (from UDP-glucose) SYNONYMS - UDP-glucuronic acid biosynthesis (from UDP-glucose) SYNONYMS - UDPGlcA biosynthesis // UNIQUE-ID - PWY-5659 TYPES - GDP-Mannose-Biosynthesis COMMON-NAME - GDP-mannose biosynthesis CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (GDP-MANNOSE PWY-66) PREDECESSORS - (2.7.7.13-RXN PHOSMANMUT-RXN) PREDECESSORS - (PHOSMANMUT-RXN MANNPISOM-RXN) PREDECESSORS - (MANNPISOM-RXN PGLUCISOM-RXN) REACTION-LAYOUT - (2.7.7.13-RXN (:LEFT-PRIMARIES MANNOSE-1P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES GDP-MANNOSE)) REACTION-LAYOUT - (PHOSMANMUT-RXN (:LEFT-PRIMARIES MANNOSE-1P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES MANNOSE-6P)) REACTION-LAYOUT - (MANNPISOM-RXN (:LEFT-PRIMARIES MANNOSE-6P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES FRUCTOSE-6P)) REACTION-LAYOUT - (PGLUCISOM-RXN (:LEFT-PRIMARIES GLC-6-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FRUCTOSE-6P)) REACTION-LIST - 2.7.7.13-RXN REACTION-LIST - PHOSMANMUT-RXN REACTION-LIST - MANNPISOM-RXN REACTION-LIST - PGLUCISOM-RXN // UNIQUE-ID - PWY-5143 TYPES - Activation TYPES - Lipid-Biosynthesis COMMON-NAME - fatty acid activation CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - SRI CREDITS - |caspi| CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |zhang| PATHWAY-LINKS - (|Fatty-Acyl-CoA| TRIGLSYN-PWY PWY-5129 PWY-5080) PATHWAY-LINKS - (|Fatty-Acids| LIPAS-PWY PWY-5142) PREDECESSORS - (RXN-7904) PRIMARIES - (RXN-7904 (|Fatty-Acids|) (|Fatty-Acyl-CoA|)) REACTION-LAYOUT - (RXN-7904 (:LEFT-PRIMARIES |Fatty-Acids|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Fatty-Acyl-CoA|)) REACTION-LIST - RXN-7904 SYNONYMS - acyl-CoA synthetase pathway // UNIQUE-ID - PWY0-1264 TYPES - Lipid-Biosynthesis COMMON-NAME - biotin-carboxyl carrier protein CITATIONS - :EV-COMP-AINF:3497824359:liya CREDITS - SRI CREDITS - |caspi| PREDECESSORS - (RXN0-5055 BIOTIN-CARBOXYL-RXN) PREDECESSORS - (BIOTIN-CARBOXYL-RXN RXN-7101) PREDECESSORS - (RXN-7101 BIOTINLIG-RXN) PREDECESSORS - (BIOTIN-CARBOXYL-RXN RXN0-5055) PRIMARIES - (RXN0-5055 NIL (|BCCP-dimers|)) PRIMARIES - (BIOTINLIG-RXN (|BCCP-monomers|) NIL) REACTION-LAYOUT - (RXN0-5055 (:LEFT-PRIMARIES |Carboxybiotin-BCCP|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |BCCP-dimers|)) REACTION-LAYOUT - (BIOTIN-CARBOXYL-RXN (:LEFT-PRIMARIES |BCCP-dimers|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Carboxybiotin-BCCP|)) REACTION-LAYOUT - (RXN-7101 (:LEFT-PRIMARIES |BCCP-biotin-monomers|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |BCCP-dimers|)) REACTION-LAYOUT - (BIOTINLIG-RXN (:LEFT-PRIMARIES |BCCP-monomers|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |BCCP-biotin-monomers|)) REACTION-LIST - RXN0-5055 REACTION-LIST - BIOTIN-CARBOXYL-RXN REACTION-LIST - RXN-7101 REACTION-LIST - BIOTINLIG-RXN SYNONYMS - BCCP // UNIQUE-ID - PWY-401 TYPES - Lipid-Biosynthesis COMMON-NAME - glycolipid biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - |zhang| PREDECESSORS - (RXN-9721 2.4.1.46-RXN) PREDECESSORS - (RXN-1226 2.4.1.46-RXN) PREDECESSORS - (RXN-1225 2.4.1.46-RXN) PRIMARIES - (RXN-9721 (|D-Galactosyl-12-diacyl-glycerols|) (CPD-10364)) PRIMARIES - (RXN-1226 (|D-Galactosyl-12-diacyl-glycerols|) (CPD-10363)) PRIMARIES - (RXN-1224 NIL (SULFOQUINOVOSYLDIACYLGLYCEROL)) PRIMARIES - (RXN-1223 (UDP-GLUCOSE) NIL) PRIMARIES - (RXN-1225 (|D-Galactosyl-12-diacyl-glycerols|) (|Galactosyl-galactosyl-diacyl-glycerols|)) PRIMARIES - (2.4.1.46-RXN (DIACYLGLYCEROL) (|D-Galactosyl-12-diacyl-glycerols|)) REACTION-LAYOUT - (RXN-9721 (:LEFT-PRIMARIES CPD-10363 |D-Galactosyl-12-diacyl-glycerols|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIACYLGLYCEROL CPD-10364)) REACTION-LAYOUT - (RXN-1226 (:LEFT-PRIMARIES |D-Galactosyl-12-diacyl-glycerols|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIACYLGLYCEROL CPD-10363)) REACTION-LAYOUT - (RXN-1225 (:LEFT-PRIMARIES |D-Galactosyl-12-diacyl-glycerols|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Galactosyl-galactosyl-diacyl-glycerols|)) REACTION-LAYOUT - (2.4.1.46-RXN (:LEFT-PRIMARIES DIACYLGLYCEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |D-Galactosyl-12-diacyl-glycerols|)) REACTION-LIST - RXN-9721 REACTION-LIST - RXN-1226 REACTION-LIST - RXN-1225 REACTION-LIST - 2.4.1.46-RXN SYNONYMS - glycosylglyceride biosynthesis // UNIQUE-ID - PWY-5885 TYPES - Lipid-Biosynthesis COMMON-NAME - wax esters biosynthesis II CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - O-27 CREDITS - |pujar| PATHWAY-LINKS - (|Triacylglycerols| TRIGLSYN-PWY) PREDECESSORS - (RXN-9356 DIACYLGLYCEROL-O-ACYLTRANSFERASE-RXN) PRIMARIES - (RXN-9356 (CPD-9965) (CPD-9966)) PRIMARIES - (DIACYLGLYCEROL-O-ACYLTRANSFERASE-RXN (DIACYLGLYCEROL) (|Triacylglycerols|)) PRIMARIES - (2.3.1.75-RXN (ACYL-COA) (CO-A)) REACTION-LAYOUT - (RXN-9356 (:LEFT-PRIMARIES CPD-9965) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9966)) REACTION-LAYOUT - (DIACYLGLYCEROL-O-ACYLTRANSFERASE-RXN (:LEFT-PRIMARIES DIACYLGLYCEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Triacylglycerols|)) REACTION-LIST - RXN-9356 REACTION-LIST - DIACYLGLYCEROL-O-ACYLTRANSFERASE-RXN SYNONYMS - WS/DGAT biosynthesis SYNONYMS - petunia wax biosynthesis // UNIQUE-ID - PWY-5148 TYPES - Lipid-Biosynthesis COMMON-NAME - acyl-CoA hydrolysis CITATIONS - :EV-COMP-AINF:3497824358:liya PREDECESSORS - (THIOESTER-RXN) PRIMARIES - (THIOESTER-RXN (|Saturated-Fatty-Acyl-CoA|) (|Fatty-Acids|)) REACTION-LAYOUT - (THIOESTER-RXN (:LEFT-PRIMARIES |Saturated-Fatty-Acyl-CoA|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Fatty-Acids|)) REACTION-LIST - THIOESTER-RXN SYNONYMS - acyl-CoA thioesterase pathway // UNIQUE-ID - PWY-5142 TYPES - Lipid-Biosynthesis COMMON-NAME - acyl-ACP thioesterase pathway CITATIONS - :EV-COMP-AINF:3497824359:liya PATHWAY-LINKS - (|Fatty-Acids| PWY-5143) PREDECESSORS - (RXN-7902) PRIMARIES - (RXN-7902 (ACYL-ACP) (|Fatty-Acids|)) REACTION-LAYOUT - (RXN-7902 (:LEFT-PRIMARIES ACYL-ACP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Fatty-Acids|)) REACTION-LIST - RXN-7902 // UNIQUE-ID - TRIGLSYN-PWY TYPES - Lipid-Biosynthesis COMMON-NAME - triacylglycerol biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya PREDECESSORS - (RXN-1623 RXN-1381) PREDECESSORS - (PHOSPHATIDATE-PHOSPHATASE-RXN RXN-1623) PREDECESSORS - (DIACYLGLYCEROL-O-ACYLTRANSFERASE-RXN PHOSPHOLIPASE-C-RXN) PREDECESSORS - (PHOSPHOLIPASE-C-RXN) PREDECESSORS - (DIACYLGLYCEROL-O-ACYLTRANSFERASE-RXN PHOSPHATIDATE-PHOSPHATASE-RXN) PREDECESSORS - (RXN-1641 PHOSPHATIDATE-PHOSPHATASE-RXN) PRIMARIES - (RXN-1641 (DIACYLGLYCEROL) (|Triacylglycerols|)) PRIMARIES - (RXN-1381 (GLYCEROL-3P) (ACYL-SN-GLYCEROL-3P)) PRIMARIES - (DIACYLGLYCEROL-O-ACYLTRANSFERASE-RXN (DIACYLGLYCEROL) (|Triacylglycerols|)) PRIMARIES - (RXN-10462 NIL (ACYL-SN-GLYCEROL-3P)) REACTION-LAYOUT - (RXN-1641 (:LEFT-PRIMARIES DIACYLGLYCEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Triacylglycerols|)) REACTION-LAYOUT - (RXN-1623 (:LEFT-PRIMARIES ACYL-SN-GLYCEROL-3P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-PHOSPHATIDATE)) REACTION-LAYOUT - (RXN-1381 (:LEFT-PRIMARIES GLYCEROL-3P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ACYL-SN-GLYCEROL-3P)) REACTION-LAYOUT - (DIACYLGLYCEROL-O-ACYLTRANSFERASE-RXN (:LEFT-PRIMARIES DIACYLGLYCEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Triacylglycerols|)) REACTION-LAYOUT - (PHOSPHATIDATE-PHOSPHATASE-RXN (:LEFT-PRIMARIES L-PHOSPHATIDATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIACYLGLYCEROL)) REACTION-LIST - RXN-1641 REACTION-LIST - RXN-1623 REACTION-LIST - RXN-1381 REACTION-LIST - DIACYLGLYCEROL-O-ACYLTRANSFERASE-RXN REACTION-LIST - PHOSPHATIDATE-PHOSPHATASE-RXN SYNONYMS - triglyceride biosynthesis SYNONYMS - Kennedy pathway SYNONYMS - TAG biosynthesis // UNIQUE-ID - PWY-5129 TYPES - Lipid-Biosynthesis COMMON-NAME - sphingolipid biosynthesis (plants) CITATIONS - :EV-COMP-AINF:3497824356:liya PREDECESSORS - (SPHINGANINE-KINASE-RXN 3-DEHYDROSPHINGANINE-REDUCTASE-RXN) PREDECESSORS - (RXN-7801 RXN-7792) PREDECESSORS - (RXN-7799 RXN-7792) PREDECESSORS - (RXN-7798 RXN-7797) PREDECESSORS - (RXN-7795 RXN-7792) PREDECESSORS - (RXN-7793 RXN-7792) PREDECESSORS - (RXN-7792 3-DEHYDROSPHINGANINE-REDUCTASE-RXN) PREDECESSORS - (RXN3O-1380 3-DEHYDROSPHINGANINE-REDUCTASE-RXN) PREDECESSORS - (3-DEHYDROSPHINGANINE-REDUCTASE-RXN SERINE-C-PALMITOYLTRANSFERASE-RXN) PREDECESSORS - (RXN-7797 RXN-7792) PREDECESSORS - (RXN-7796 RXN-7792) PRIMARIES - (RXN-7801 (|Plant-Ceramides-I|) (|Glucosyl-Ceramides|)) PRIMARIES - (RXN-7799 (|Plant-Ceramides-I|) (|Plant-Ceramide-Phosphate|)) PRIMARIES - (RXN-7797 (|Plant-Ceramides-I|) (|Plant-Ceramides-III|)) PRIMARIES - (RXN-7795 (|Plant-Ceramides-I|) (|Inositolphosphoryl-Ceramides|)) PRIMARIES - (RXN-7793 (|Plant-Ceramides-I|) (|Glucosyl-Ceramides|)) PRIMARIES - (RXN-7792 (DIHYDRO-SPHINGOSINE) (|Plant-Ceramides-I|)) PRIMARIES - (RXN3O-1380 (DIHYDRO-SPHINGOSINE) (PHYTOSPINGOSINE)) PRIMARIES - (SERINE-C-PALMITOYLTRANSFERASE-RXN (PALMITYL-COA SER) (DEHYDROSPHINGANINE)) PRIMARIES - (3-DEHYDROSPHINGANINE-REDUCTASE-RXN (DEHYDROSPHINGANINE) (DIHYDRO-SPHINGOSINE)) PRIMARIES - (DHS-PHOSPHATASE-RXN (DIHYDRO-SPHINGOSINE) (CPD-649)) REACTION-LAYOUT - (SPHINGANINE-KINASE-RXN (:LEFT-PRIMARIES DIHYDRO-SPHINGOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-649)) REACTION-LAYOUT - (RXN-7801 (:LEFT-PRIMARIES |Plant-Ceramides-I|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Glucosyl-Ceramides|)) REACTION-LAYOUT - (RXN-7799 (:LEFT-PRIMARIES |Plant-Ceramides-I|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Plant-Ceramide-Phosphate|)) REACTION-LAYOUT - (RXN-7798 (:LEFT-PRIMARIES |Plant-Ceramides-III|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Plant-Ceramides-IV|)) REACTION-LAYOUT - (RXN-7797 (:LEFT-PRIMARIES |Plant-Ceramides-I|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Plant-Ceramides-III|)) REACTION-LAYOUT - (RXN-7796 (:LEFT-PRIMARIES |Plant-Ceramides-I|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Plant-Ceramides-II|)) REACTION-LAYOUT - (RXN-7795 (:LEFT-PRIMARIES |Plant-Ceramides-I|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Inositolphosphoryl-Ceramides|)) REACTION-LAYOUT - (RXN-7793 (:LEFT-PRIMARIES |Plant-Ceramides-I|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Glucosyl-Ceramides|)) REACTION-LAYOUT - (RXN-7792 (:LEFT-PRIMARIES DIHYDRO-SPHINGOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Plant-Ceramides-I|)) REACTION-LAYOUT - (RXN3O-1380 (:LEFT-PRIMARIES DIHYDRO-SPHINGOSINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHYTOSPINGOSINE)) REACTION-LAYOUT - (SERINE-C-PALMITOYLTRANSFERASE-RXN (:LEFT-PRIMARIES PALMITYL-COA SER) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DEHYDROSPHINGANINE)) REACTION-LAYOUT - (3-DEHYDROSPHINGANINE-REDUCTASE-RXN (:LEFT-PRIMARIES DIHYDRO-SPHINGOSINE) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DEHYDROSPHINGANINE)) REACTION-LIST - SPHINGANINE-KINASE-RXN REACTION-LIST - RXN-7801 REACTION-LIST - RXN-7799 REACTION-LIST - RXN-7798 REACTION-LIST - RXN-7797 REACTION-LIST - RXN-7796 REACTION-LIST - RXN-7795 REACTION-LIST - RXN-7793 REACTION-LIST - RXN-7792 REACTION-LIST - RXN3O-1380 REACTION-LIST - SERINE-C-PALMITOYLTRANSFERASE-RXN REACTION-LIST - 3-DEHYDROSPHINGANINE-REDUCTASE-RXN // UNIQUE-ID - PWY3O-450 TYPES - PhosphatidylcholineBiosynthesis COMMON-NAME - phosphatidylcholine biosynthesis I CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - O-16 CREDITS - |hong| IN-PATHWAY - PWY4FS-5 PREDECESSORS - (RXN-5781 2.7.7.15-RXN) PREDECESSORS - (2.7.7.15-RXN CHOLINE-KINASE-RXN) PRIMARIES - (RXN-5781 NIL (PHOSPHATIDYLCHOLINE)) REACTION-LAYOUT - (RXN-5781 (:LEFT-PRIMARIES CDP-CHOLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHATIDYLCHOLINE)) REACTION-LAYOUT - (2.7.7.15-RXN (:LEFT-PRIMARIES PHOSPHORYL-CHOLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CDP-CHOLINE)) REACTION-LAYOUT - (CHOLINE-KINASE-RXN (:LEFT-PRIMARIES CHOLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHORYL-CHOLINE)) REACTION-LIST - RXN-5781 REACTION-LIST - 2.7.7.15-RXN REACTION-LIST - CHOLINE-KINASE-RXN SUPER-PATHWAYS - PWY4FS-5 // UNIQUE-ID - PWY4FS-3 TYPES - PhosphatidylcholineBiosynthesis COMMON-NAME - phosphatidylcholine biosynthesis III CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |zhang| IN-PATHWAY - PWY4FS-5 PREDECESSORS - (RXN4FS-2 2.1.1.71-RXN) PREDECESSORS - (2.1.1.71-RXN RXN4FS-1) PREDECESSORS - (RXN4FS-1 2.7.7.57-RXN) PREDECESSORS - (2.7.7.57-RXN 2.1.1.103-RXN) PRIMARIES - (RXN4FS-2 (CPD-160) (PHOSPHATIDYLCHOLINE)) PRIMARIES - (2.1.1.71-RXN (CPD-405) (CPD-160)) PRIMARIES - (RXN4FS-1 (CDP-N-METHYLETHANOLAMIN) (CPD-405)) PRIMARIES - (2.7.7.57-RXN (CPD-406) (CDP-N-METHYLETHANOLAMIN)) PRIMARIES - (2.1.1.103-RXN (PHOSPHORYL-ETHANOLAMINE) (CPD-406)) REACTION-LAYOUT - (RXN4FS-2 (:LEFT-PRIMARIES CPD-160) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHATIDYLCHOLINE)) REACTION-LAYOUT - (RXN4FS-1 (:LEFT-PRIMARIES CDP-N-METHYLETHANOLAMIN) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-405)) REACTION-LAYOUT - (2.1.1.71-RXN (:LEFT-PRIMARIES CPD-405) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-160)) REACTION-LAYOUT - (2.7.7.57-RXN (:LEFT-PRIMARIES CPD-406) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CDP-N-METHYLETHANOLAMIN)) REACTION-LAYOUT - (2.1.1.103-RXN (:LEFT-PRIMARIES PHOSPHORYL-ETHANOLAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-406)) REACTION-LIST - RXN4FS-2 REACTION-LIST - RXN4FS-1 REACTION-LIST - 2.1.1.71-RXN REACTION-LIST - 2.7.7.57-RXN REACTION-LIST - 2.1.1.103-RXN SUPER-PATHWAYS - PWY4FS-5 // UNIQUE-ID - PWY4FS-2 TYPES - PhosphatidylcholineBiosynthesis COMMON-NAME - phosphatidylcholine biosynthesis II CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |zhang| IN-PATHWAY - PWY4FS-5 PREDECESSORS - (RXN-5781 2.7.7.15-RXN) PREDECESSORS - (2.7.7.15-RXN RXN-5643) PREDECESSORS - (RXN-5643 RXN-5642) PREDECESSORS - (RXN-5642 2.1.1.103-RXN) PRIMARIES - (RXN-5781 (CDP-CHOLINE) (PHOSPHATIDYLCHOLINE)) PRIMARIES - (RXN-5643 (CPD-5441) (PHOSPHORYL-CHOLINE)) PRIMARIES - (RXN-5642 (CPD-406) (CPD-5441)) PRIMARIES - (2.7.7.15-RXN (PHOSPHORYL-CHOLINE) (CDP-CHOLINE)) PRIMARIES - (2.1.1.103-RXN (PHOSPHORYL-ETHANOLAMINE) (CPD-406)) REACTION-LAYOUT - (RXN-5781 (:LEFT-PRIMARIES CDP-CHOLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHATIDYLCHOLINE)) REACTION-LAYOUT - (2.7.7.15-RXN (:LEFT-PRIMARIES PHOSPHORYL-CHOLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CDP-CHOLINE)) REACTION-LAYOUT - (RXN-5642 (:LEFT-PRIMARIES CPD-406) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-5441)) REACTION-LAYOUT - (RXN-5643 (:LEFT-PRIMARIES CPD-5441) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHORYL-CHOLINE)) REACTION-LAYOUT - (2.1.1.103-RXN (:LEFT-PRIMARIES PHOSPHORYL-ETHANOLAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-406)) REACTION-LIST - RXN-5781 REACTION-LIST - 2.7.7.15-RXN REACTION-LIST - RXN-5642 REACTION-LIST - RXN-5643 REACTION-LIST - 2.1.1.103-RXN SUPER-PATHWAYS - PWY4FS-5 // UNIQUE-ID - PWY4FS-4 TYPES - PhosphatidylcholineBiosynthesis COMMON-NAME - phosphatidylcholine biosynthesis IV CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |zhang| IN-PATHWAY - PWY4FS-5 PREDECESSORS - (RXN4FS-3 RXN-5642) PREDECESSORS - (RXN-5642 2.1.1.103-RXN) PREDECESSORS - (RXN4FS-2 RXN4FS-4) PREDECESSORS - (RXN4FS-4 RXN4FS-3) PRIMARIES - (RXN-5642 (CPD-406) (CPD-5441)) PRIMARIES - (2.1.1.103-RXN (PHOSPHORYL-ETHANOLAMINE) (CPD-406)) PRIMARIES - (RXN4FS-2 (CPD-160) (PHOSPHATIDYLCHOLINE)) PRIMARIES - (RXN4FS-4 (CPD4FS-1) (CPD-160)) PRIMARIES - (RXN4FS-3 (CPD-5441) (CPD4FS-1)) REACTION-LAYOUT - (RXN-5642 (:LEFT-PRIMARIES CPD-406) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-5441)) REACTION-LAYOUT - (2.1.1.103-RXN (:LEFT-PRIMARIES PHOSPHORYL-ETHANOLAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-406)) REACTION-LAYOUT - (RXN4FS-2 (:LEFT-PRIMARIES CPD-160) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHATIDYLCHOLINE)) REACTION-LAYOUT - (RXN4FS-4 (:LEFT-PRIMARIES CPD4FS-1) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-160)) REACTION-LAYOUT - (RXN4FS-3 (:LEFT-PRIMARIES CPD-5441) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD4FS-1)) REACTION-LIST - RXN-5642 REACTION-LIST - 2.1.1.103-RXN REACTION-LIST - RXN4FS-2 REACTION-LIST - RXN4FS-4 REACTION-LIST - RXN4FS-3 SUPER-PATHWAYS - PWY4FS-5 // UNIQUE-ID - PWY-5269 TYPES - Cardiolipin-Biosynthesis COMMON-NAME - cardiolipin biosynthesis II CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |caspi| CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |zhang| PATHWAY-LINKS - (CDPDIACYLGLYCEROL PWY-5667) PREDECESSORS - (RXN-8141 PGPPHOSPHA-RXN) PREDECESSORS - (PGPPHOSPHA-RXN PHOSPHAGLYPSYN-RXN) PRIMARIES - (PGPPHOSPHA-RXN (L-1-PHOSPHATIDYL-GLYCEROL-P) (L-1-PHOSPHATIDYL-GLYCEROL)) PRIMARIES - (PHOSPHAGLYPSYN-RXN (CDPDIACYLGLYCEROL) (L-1-PHOSPHATIDYL-GLYCEROL-P)) PRIMARIES - (RXN-8141 (L-1-PHOSPHATIDYL-GLYCEROL) (CARDIOLIPIN)) PRIMARIES - (CDPDIGLYSYN-RXN (L-PHOSPHATIDATE) (CDPDIACYLGLYCEROL)) REACTION-LAYOUT - (RXN-8141 (:LEFT-PRIMARIES L-1-PHOSPHATIDYL-GLYCEROL CDPDIACYLGLYCEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CARDIOLIPIN)) REACTION-LAYOUT - (PGPPHOSPHA-RXN (:LEFT-PRIMARIES L-1-PHOSPHATIDYL-GLYCEROL-P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-1-PHOSPHATIDYL-GLYCEROL)) REACTION-LAYOUT - (PHOSPHAGLYPSYN-RXN (:LEFT-PRIMARIES CDPDIACYLGLYCEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-1-PHOSPHATIDYL-GLYCEROL-P)) REACTION-LIST - RXN-8141 REACTION-LIST - PGPPHOSPHA-RXN REACTION-LIST - PHOSPHAGLYPSYN-RXN // UNIQUE-ID - PWY4FS-6 TYPES - PhosphatidylethanolamineBiosynthesis COMMON-NAME - phosphatidylethanolamine biosynthesis II CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |zhang| PREDECESSORS - (ETHANOLAMINEPHOSPHOTRANSFERASE-RXN 2.7.7.14-RXN) PREDECESSORS - (2.7.7.14-RXN ETHANOLAMINE-KINASE-RXN) PRIMARIES - (ETHANOLAMINEPHOSPHOTRANSFERASE-RXN (CDP-ETHANOLAMINE) (L-1-PHOSPHATIDYL-ETHANOLAMINE)) PRIMARIES - (2.7.7.14-RXN (PHOSPHORYL-ETHANOLAMINE) (CDP-ETHANOLAMINE)) PRIMARIES - (ETHANOLAMINE-KINASE-RXN (ETHANOL-AMINE) (PHOSPHORYL-ETHANOLAMINE)) REACTION-LAYOUT - (ETHANOLAMINEPHOSPHOTRANSFERASE-RXN (:LEFT-PRIMARIES CDP-ETHANOLAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-1-PHOSPHATIDYL-ETHANOLAMINE)) REACTION-LAYOUT - (2.7.7.14-RXN (:LEFT-PRIMARIES PHOSPHORYL-ETHANOLAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CDP-ETHANOLAMINE)) REACTION-LAYOUT - (ETHANOLAMINE-KINASE-RXN (:LEFT-PRIMARIES ETHANOL-AMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHORYL-ETHANOLAMINE)) REACTION-LIST - ETHANOLAMINEPHOSPHOTRANSFERASE-RXN REACTION-LIST - 2.7.7.14-RXN REACTION-LIST - ETHANOLAMINE-KINASE-RXN // UNIQUE-ID - PWY-5669 TYPES - PhosphatidylethanolamineBiosynthesis COMMON-NAME - phosphatidylethanolamine biosynthesis I CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (CDPDIACYLGLYCEROL PWY-5667) PATHWAY-LINKS - (DIHYDROXY-ACETONE-PHOSPHATE GLYCOLYSIS) PREDECESSORS - (PHOSPHASERSYN-RXN) PREDECESSORS - (PHOSPHASERDECARB-RXN PHOSPHASERSYN-RXN) PRIMARIES - (PHOSPHASERSYN-RXN (CDPDIACYLGLYCEROL)) REACTION-LAYOUT - (PHOSPHASERDECARB-RXN (:LEFT-PRIMARIES L-1-PHOSPHATIDYL-SERINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-1-PHOSPHATIDYL-ETHANOLAMINE)) REACTION-LAYOUT - (PHOSPHASERSYN-RXN (:LEFT-PRIMARIES CDPDIACYLGLYCEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-1-PHOSPHATIDYL-SERINE)) REACTION-LIST - PHOSPHASERDECARB-RXN REACTION-LIST - PHOSPHASERSYN-RXN // UNIQUE-ID - PWY-5667 TYPES - CDP-diacylglycerol-Biosynthesis COMMON-NAME - CDP-diacylglycerol biosynthesis I CREDITS - SRI CREDITS - |caspi| IN-PATHWAY - PWY4FS-8 PATHWAY-LINKS - (CDPDIACYLGLYCEROL PWY-5269 PWY-5669) PATHWAY-LINKS - (DIHYDROXY-ACETONE-PHOSPHATE GLYCOLYSIS) PREDECESSORS - (CDPDIGLYSYN-RXN RXN-1623) PREDECESSORS - (RXN-1623 RXN-1381) PREDECESSORS - (RXN-1381 GLYC3PDEHYDROGBIOSYN-RXN) PREDECESSORS - (CDPDIGLYSYN-RXN) PRIMARIES - (PHOSPHASERSYN-RXN (CDPDIACYLGLYCEROL) (L-1-PHOSPHATIDYL-SERINE)) REACTION-LAYOUT - (GLYC3PDEHYDROGBIOSYN-RXN (:LEFT-PRIMARIES GLYCEROL-3P) (:DIRECTION :R2L) (:RIGHT-PRIMARIES DIHYDROXY-ACETONE-PHOSPHATE)) REACTION-LAYOUT - (RXN-1381 (:LEFT-PRIMARIES GLYCEROL-3P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ACYL-SN-GLYCEROL-3P)) REACTION-LAYOUT - (RXN-1623 (:LEFT-PRIMARIES ACYL-SN-GLYCEROL-3P) (:DIRECTION :L2R) (:RIGHT-PRIMARIES L-PHOSPHATIDATE)) REACTION-LAYOUT - (CDPDIGLYSYN-RXN (:LEFT-PRIMARIES L-PHOSPHATIDATE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CDPDIACYLGLYCEROL)) REACTION-LIST - GLYC3PDEHYDROGBIOSYN-RXN REACTION-LIST - RXN-1381 REACTION-LIST - RXN-1623 REACTION-LIST - CDPDIGLYSYN-RXN SUPER-PATHWAYS - PWY4FS-8 SYNONYMS - CDP-diacylglycerol biosynthesis // UNIQUE-ID - PWY-6075 TYPES - Ergosterol-Biosynthesis COMMON-NAME - ergosterol biosynthesis CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |caspi| PREDECESSORS - (RXN3O-218 RXN3O-203) PREDECESSORS - (RXN3O-203 RXN3O-178) PREDECESSORS - (RXN3O-227 RXN3O-218) PREDECESSORS - (1.3.1.71-RXN RXN3O-227) REACTION-LAYOUT - (1.3.1.71-RXN (:LEFT-PRIMARIES ERGOSTEROL) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 57222428-ERGOSTATETRAENOL)) REACTION-LAYOUT - (RXN3O-227 (:LEFT-PRIMARIES 572428-ERGOSTATRIENOL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 57222428-ERGOSTATETRAENOL)) REACTION-LAYOUT - (RXN3O-218 (:LEFT-PRIMARIES EPISTEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 572428-ERGOSTATRIENOL)) REACTION-LAYOUT - (RXN3O-203 (:LEFT-PRIMARIES FECOSTEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES EPISTEROL)) REACTION-LAYOUT - (RXN3O-178 (:LEFT-PRIMARIES ZYMOSTEROL) (:DIRECTION :L2R) (:RIGHT-PRIMARIES FECOSTEROL)) REACTION-LIST - 1.3.1.71-RXN REACTION-LIST - RXN3O-227 REACTION-LIST - RXN3O-218 REACTION-LIST - RXN3O-203 REACTION-LIST - RXN3O-178 // UNIQUE-ID - PWY-3385 TYPES - Choline-Biosynthesis COMMON-NAME - choline biosynthesis I CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |hartmut| PATHWAY-LINKS - (PHOSPHORYL-CHOLINE PWY-3561) PATHWAY-LINKS - (CHOLINE PWY1F-353) PREDECESSORS - (RXN-5647 RXN-5643) PREDECESSORS - (RXN-5643 RXN-5642) PREDECESSORS - (RXN-5642 2.1.1.103-RXN) PREDECESSORS - (2.1.1.103-RXN ETHANOLAMINE-KINASE-RXN) PREDECESSORS - (ETHANOLAMINE-KINASE-RXN RXN-5641) PRIMARIES - (RXN-5647 (PHOSPHORYL-CHOLINE) (CHOLINE)) PRIMARIES - (RXN-5643 (CPD-5441) (PHOSPHORYL-CHOLINE)) PRIMARIES - (RXN-5642 (CPD-406) (CPD-5441)) PRIMARIES - (2.1.1.103-RXN (PHOSPHORYL-ETHANOLAMINE) (CPD-406)) PRIMARIES - (ETHANOLAMINE-KINASE-RXN (ETHANOL-AMINE) (PHOSPHORYL-ETHANOLAMINE)) PRIMARIES - (RXN-5641 (SER) (ETHANOL-AMINE)) REACTION-LAYOUT - (RXN-5647 (:LEFT-PRIMARIES PHOSPHORYL-CHOLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CHOLINE)) REACTION-LAYOUT - (RXN-5643 (:LEFT-PRIMARIES CPD-5441) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHORYL-CHOLINE)) REACTION-LAYOUT - (RXN-5642 (:LEFT-PRIMARIES CPD-406) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-5441)) REACTION-LAYOUT - (2.1.1.103-RXN (:LEFT-PRIMARIES PHOSPHORYL-ETHANOLAMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-406)) REACTION-LAYOUT - (ETHANOLAMINE-KINASE-RXN (:LEFT-PRIMARIES ETHANOL-AMINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHORYL-ETHANOLAMINE)) REACTION-LAYOUT - (RXN-5641 (:LEFT-PRIMARIES SER) (:DIRECTION :L2R) (:RIGHT-PRIMARIES ETHANOL-AMINE)) REACTION-LIST - RXN-5647 REACTION-LIST - RXN-5643 REACTION-LIST - RXN-5642 REACTION-LIST - 2.1.1.103-RXN REACTION-LIST - ETHANOLAMINE-KINASE-RXN REACTION-LIST - RXN-5641 // UNIQUE-ID - PWY-3561 TYPES - Choline-Biosynthesis COMMON-NAME - choline biosynthesis III CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |hartmut| PATHWAY-LINKS - (PHOSPHORYL-CHOLINE PWY-3385) PREDECESSORS - (PHOSCHOL-RXN RXN-5781) PREDECESSORS - (RXN-5781 2.7.7.15-RXN) PREDECESSORS - (2.7.7.15-RXN) PRIMARIES - (RXN-5781 (CDP-CHOLINE) (PHOSPHATIDYLCHOLINE)) PRIMARIES - (PHOSCHOL-RXN (PHOSPHATIDYLCHOLINE) (CHOLINE)) PRIMARIES - (2.7.8.2-RXN (CDP-CHOLINE) (PHOSPHATIDYLCHOLINE)) PRIMARIES - (2.7.7.15-RXN (PHOSPHORYL-CHOLINE) (CDP-CHOLINE)) REACTION-LAYOUT - (RXN-5781 (:LEFT-PRIMARIES CDP-CHOLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES PHOSPHATIDYLCHOLINE)) REACTION-LAYOUT - (PHOSCHOL-RXN (:LEFT-PRIMARIES PHOSPHATIDYLCHOLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CHOLINE)) REACTION-LAYOUT - (2.7.7.15-RXN (:LEFT-PRIMARIES PHOSPHORYL-CHOLINE) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CDP-CHOLINE)) REACTION-LIST - RXN-5781 REACTION-LIST - PHOSCHOL-RXN REACTION-LIST - 2.7.7.15-RXN // UNIQUE-ID - FASYN-ELONG-PWY TYPES - Fatty-acid-biosynthesis COMMON-NAME - fatty acid elongation -- saturated CITATIONS - :EV-COMP-AINF:3497824359:liya CLASS-INSTANCE-LINKS - 3-OXOACYL-ACP-REDUCT-RXN PATHWAY-LINKS - (|Acetoacetyl-ACPs| (PWY-4381 . :INCOMING)) POLYMERIZATION-LINKS - (|Saturated-Fatty-Acyl-ACPs| ENOYL-ACP-REDUCT-NADH-RXN 3-OXOACYL-ACP-SYNTH-RXN) PREDECESSORS - (ENOYL-ACP-REDUCT-NADPH-RXN 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN) PREDECESSORS - (ENOYL-ACP-REDUCT-NADH-RXN 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN) PREDECESSORS - (3-HYDROXYDECANOYL-ACP-DEHYDR-RXN 3-OXOACYL-ACP-REDUCT-RXN) PREDECESSORS - (3-OXOACYL-ACP-REDUCT-RXN 3-OXOACYL-ACP-SYNTH-RXN) PRIMARIES - (ENOYL-ACP-REDUCT-NADPH-RXN (TRANS-D2-ENOYL-ACP) NIL) REACTION-LAYOUT - (3-OXOACYL-ACP-SYNTH-RXN (:LEFT-PRIMARIES |Saturated-Fatty-Acyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES B-KETOACYL-ACP)) REACTION-LAYOUT - (3-OXOACYL-ACP-REDUCT-RXN (:LEFT-PRIMARIES OH-ACYL-ACP) (:DIRECTION :R2L) (:RIGHT-PRIMARIES B-KETOACYL-ACP)) REACTION-LAYOUT - (ENOYL-ACP-REDUCT-NADH-RXN (:LEFT-PRIMARIES |Saturated-Fatty-Acyl-ACPs|) (:DIRECTION :R2L) (:RIGHT-PRIMARIES TRANS-D2-ENOYL-ACP)) REACTION-LAYOUT - (ENOYL-ACP-REDUCT-NADPH-RXN (:LEFT-PRIMARIES |Saturated-Fatty-Acyl-ACPs|) (:DIRECTION :R2L) (:RIGHT-PRIMARIES TRANS-D2-ENOYL-ACP)) REACTION-LAYOUT - (3-HYDROXYDECANOYL-ACP-DEHYDR-RXN (:LEFT-PRIMARIES OH-ACYL-ACP) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TRANS-D2-ENOYL-ACP)) REACTION-LIST - 3-OXOACYL-ACP-SYNTH-RXN REACTION-LIST - 3-OXOACYL-ACP-REDUCT-RXN REACTION-LIST - ENOYL-ACP-REDUCT-NADH-RXN REACTION-LIST - ENOYL-ACP-REDUCT-NADPH-RXN REACTION-LIST - 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN // UNIQUE-ID - PWY-5973 TYPES - Fatty-acid-biosynthesis COMMON-NAME - cis-vaccenate biosynthesis CITATIONS - :EV-COMP-AINF:3497824359:liya CREDITS - SRI CREDITS - |caspi| PREDECESSORS - (RXN-9555 RXN-9558) PREDECESSORS - (RXN-9558 RXN-9557) PREDECESSORS - (RXN-9557 RXN-9556) PREDECESSORS - (RXN-9556 2.3.1.179-RXN) PRIMARIES - (2.3.1.179-RXN (|Palmitoleoyl-ACPs|) NIL) PRIMARIES - (RXN-9555 (|Cis-vaccenoyl-ACPs|) (CPD-9247)) PRIMARIES - (RXN-9550 NIL (CPD-9245)) REACTION-LAYOUT - (RXN-9558 (:LEFT-PRIMARIES |cis-vaccen-2-enoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Cis-vaccenoyl-ACPs|)) REACTION-LAYOUT - (RXN-9557 (:LEFT-PRIMARIES |R-3-hydroxy-cis-vaccenoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |cis-vaccen-2-enoyl-ACPs|)) REACTION-LAYOUT - (RXN-9556 (:LEFT-PRIMARIES |R-3-hydroxy-cis-vaccenoyl-ACPs|) (:DIRECTION :R2L) (:RIGHT-PRIMARIES |3-oxo-cis-vaccenoyl-ACPs|)) REACTION-LAYOUT - (2.3.1.179-RXN (:LEFT-PRIMARIES |Palmitoleoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |3-oxo-cis-vaccenoyl-ACPs|)) REACTION-LAYOUT - (RXN-9555 (:LEFT-PRIMARIES |Cis-vaccenoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9247)) REACTION-LIST - RXN-9558 REACTION-LIST - RXN-9557 REACTION-LIST - RXN-9556 REACTION-LIST - 2.3.1.179-RXN REACTION-LIST - RXN-9555 SYNONYMS - cis vaccenic acid acid biosynthesis // UNIQUE-ID - PWY-5080 TYPES - Fatty-acid-biosynthesis COMMON-NAME - very long chain fatty acid biosynthesis CITATIONS - :EV-COMP-AINF:3497824356:liya CREDITS - SRI CREDITS - |caspi| CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |zhang| POLYMERIZATION-LINKS - (|Fatty-Acyl-CoA| RXN-7711 RXN-7697) PREDECESSORS - (RXN-7699 RXN-7698) PREDECESSORS - (RXN-7698 RXN-7697) PREDECESSORS - (RXN-7711 RXN-7699) PRIMARIES - (RXN-7711 (TRANS-D2-ENOYL-COA) (|Fatty-Acyl-CoA|)) PRIMARIES - (RXN-7701 (TRANS-D2-ENOYL-COA) (|Fatty-Acyl-CoA|)) PRIMARIES - (RXN-7697 (|Fatty-Acyl-CoA|) (3-KETOACYL-COA)) REACTION-LAYOUT - (RXN-7699 (:LEFT-PRIMARIES D-3-HYDROXYACYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES TRANS-D2-ENOYL-COA)) REACTION-LAYOUT - (RXN-7711 (:LEFT-PRIMARIES TRANS-D2-ENOYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Fatty-Acyl-CoA|)) REACTION-LAYOUT - (RXN-7698 (:LEFT-PRIMARIES D-3-HYDROXYACYL-COA) (:DIRECTION :R2L) (:RIGHT-PRIMARIES 3-KETOACYL-COA)) REACTION-LAYOUT - (RXN-7697 (:LEFT-PRIMARIES |Fatty-Acyl-CoA|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES 3-KETOACYL-COA)) REACTION-LIST - RXN-7699 REACTION-LIST - RXN-7711 REACTION-LIST - RXN-7698 REACTION-LIST - RXN-7697 SYNONYMS - VLCFAs biosynthesis // UNIQUE-ID - PWY-4381 TYPES - Fatty-acid-biosynthesis COMMON-NAME - fatty acid biosynthesis initiation I CITATIONS - :EV-COMP-AINF:3497824358:liya CREDITS - SRI CREDITS - |caspi| CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |zhang| KEY-REACTIONS - 2.3.1.180-RXN PATHWAY-LINKS - (|Acetoacetyl-ACPs| FASYN-ELONG-PWY) PREDECESSORS - (2.3.1.180-RXN MALONYL-COA-ACP-TRANSACYL-RXN) PREDECESSORS - (MALONYL-COA-ACP-TRANSACYL-RXN ACETYL-COA-CARBOXYLTRANSFER-RXN) PRIMARIES - (ACETYL-COA-CARBOXYLTRANSFER-RXN (ACETYL-COA) (MALONYL-COA)) PRIMARIES - (2.3.1.180-RXN (MALONYL-ACP) NIL) PRIMARIES - (ACP-S-ACETYLTRANSFER-RXN (ACETYL-COA) (ACETYL-ACP)) PRIMARIES - (3-OXOACYL-ACP-SYNTH-BASE-RXN (ACETYL-ACP MALONYL-ACP) NIL) PRIMARIES - (MALONYL-COA-ACP-TRANSACYL-RXN (MALONYL-COA) (MALONYL-ACP)) REACTION-LAYOUT - (2.3.1.180-RXN (:LEFT-PRIMARIES MALONYL-ACP ACETYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Acetoacetyl-ACPs|)) REACTION-LAYOUT - (MALONYL-COA-ACP-TRANSACYL-RXN (:LEFT-PRIMARIES MALONYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MALONYL-ACP)) REACTION-LAYOUT - (ACETYL-COA-CARBOXYLTRANSFER-RXN (:LEFT-PRIMARIES ACETYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES MALONYL-COA)) REACTION-LIST - 2.3.1.180-RXN REACTION-LIST - MALONYL-COA-ACP-TRANSACYL-RXN REACTION-LIST - ACETYL-COA-CARBOXYLTRANSFER-RXN SYNONYMS - de novo fatty acid biosynthesis, initial reactions // UNIQUE-ID - PWY-5367 TYPES - Unusual-fatty-acid-biosynthesis COMMON-NAME - petroselinate biosynthesis CITATIONS - :EV-COMP-AINF:3497824359:liya CREDITS - SRI CREDITS - |caspi| CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |zhang| PREDECESSORS - (RXN-9551 RXN-9554) PREDECESSORS - (RXN-9554 RXN-9553) PREDECESSORS - (RXN-9553 RXN-9552) PREDECESSORS - (RXN-9552 RXN-8391) PREDECESSORS - (RXN-8391 RXN-8390) PRIMARIES - (RXN-9551 (|Petroselinoyl-ACPs|) (CPD-8477)) REACTION-LAYOUT - (RXN-9554 (:LEFT-PRIMARIES |Petroselinoyl-ACPs|) (:DIRECTION :R2L) (:RIGHT-PRIMARIES |Petrosel-2-enoyl-ACPs|)) REACTION-LAYOUT - (RXN-9553 (:LEFT-PRIMARIES |R-3-hydroxypetroselinoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Petrosel-2-enoyl-ACPs|)) REACTION-LAYOUT - (RXN-9552 (:LEFT-PRIMARIES |3-oxo-petroselinoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |R-3-hydroxypetroselinoyl-ACPs|)) REACTION-LAYOUT - (RXN-9551 (:LEFT-PRIMARIES |Petroselinoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-8477)) REACTION-LAYOUT - (RXN-8391 (:LEFT-PRIMARIES |Delta4-hexadecenoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |3-oxo-petroselinoyl-ACPs|)) REACTION-LAYOUT - (RXN-8390 (:LEFT-PRIMARIES |Palmitoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Delta4-hexadecenoyl-ACPs|)) REACTION-LIST - RXN-9554 REACTION-LIST - RXN-9553 REACTION-LIST - RXN-9552 REACTION-LIST - RXN-9551 REACTION-LIST - RXN-8391 REACTION-LIST - RXN-8390 SYNONYMS - petroselinic acid biosynthesis // UNIQUE-ID - PWY-4942 TYPES - Cyclopropane-fatty-acid-biosyn COMMON-NAME - cyclopropane and cyclopropene fatty acid biosynthesis CITATIONS - :EV-COMP-AINF:3497824359:liya PATHWAY-LINKS - (OLEATE-CPD PWY-5147) PREDECESSORS - (RXN-7422 RXN-7421) PRIMARIES - (RXN-7422 (DIHYDROSTERCULIC-ACID) (STERCULATE)) PRIMARIES - (RXN-7421 (OLEATE-CPD) (DIHYDROSTERCULIC-ACID)) REACTION-LAYOUT - (RXN-7422 (:LEFT-PRIMARIES DIHYDROSTERCULIC-ACID) (:DIRECTION :L2R) (:RIGHT-PRIMARIES STERCULATE)) REACTION-LAYOUT - (RXN-7421 (:LEFT-PRIMARIES OLEATE-CPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES DIHYDROSTERCULIC-ACID)) REACTION-LIST - RXN-7422 REACTION-LIST - RXN-7421 // UNIQUE-ID - PWY0-541 TYPES - Cyclopropane-fatty-acid-biosyn COMMON-NAME - cyclopropane fatty acid (CFA) biosynthesis CITATIONS - :EV-COMP-AINF:3497824359:liya REACTION-LAYOUT - (2.1.1.79-RXN (:LEFT-PRIMARIES |Phospholipid-Olefinic-Fatty-Acids|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Phospholipid-Cyclopropane-Fatty-Acids|)) REACTION-LIST - 2.1.1.79-RXN // UNIQUE-ID - PWY-5995 TYPES - Linoleate-Biosynthesis COMMON-NAME - linoleate biosynthesis I (plants) CITATIONS - :EV-COMP-AINF:3497824357:liya CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (OLEATE-CPD PWY-5147) PREDECESSORS - (RXN-9669 RXN-9670) PREDECESSORS - (RXN-9670 RXN-9644) PREDECESSORS - (RXN-9644) PRIMARIES - (RXN-9644 (OLEATE-CPD) (OLEOYL-COA)) PRIMARIES - (LINOLEOYL-RXN NIL (LINOLEIC_ACID)) PRIMARIES - (1.14.19.1-RXN (STEAROYL-COA) NIL) REACTION-LAYOUT - (RXN-9669 (:LEFT-PRIMARIES |Oleoyl-groups|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Linoleoyl-groups|)) REACTION-LAYOUT - (RXN-9670 (:LEFT-PRIMARIES OLEOYL-COA) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Oleoyl-groups|)) REACTION-LAYOUT - (RXN-9644 (:LEFT-PRIMARIES OLEATE-CPD) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OLEOYL-COA)) REACTION-LIST - RXN-9669 REACTION-LIST - RXN-9670 REACTION-LIST - RXN-9644 // UNIQUE-ID - PWY-5366 TYPES - Palmitoleate-Biosynthesis COMMON-NAME - palmitoleate biosynthesis II CITATIONS - :EV-COMP-AINF:3497824359:liya CREDITS - SRI CREDITS - |caspi| CREDITS - THE-ARABIDOPSIS-INFORMATION-RESOURCE CREDITS - |zhang| PATHWAY-LINKS - (|Palmitoleoyl-ACPs| PWY-5973) PREDECESSORS - (RXN-9550 RXN-8389) PREDECESSORS - (RXN-8389) PRIMARIES - (RXN-9550 NIL (CPD-9245)) REACTION-LAYOUT - (RXN-9550 (:LEFT-PRIMARIES |Palmitoleoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-9245)) REACTION-LAYOUT - (RXN-8389 (:LEFT-PRIMARIES |Palmitoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Palmitoleoyl-ACPs|)) REACTION-LIST - RXN-9550 REACTION-LIST - RXN-8389 SYNONYMS - palmitoleic acid biosynthesis // UNIQUE-ID - PWY-5989 TYPES - Stearate-Biosynthesis COMMON-NAME - stearate biosynthesis II (plants) CITATIONS - :EV-COMP-AINF:3497824359:liya CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (|Stearoyl-ACPs| PWY-5147) PREDECESSORS - (RXN-9548 RXN-9635) PREDECESSORS - (RXN-9635 RXN-9634) PREDECESSORS - (RXN-9634 RXN-9633) PREDECESSORS - (RXN-9633 RXN-9632) PRIMARIES - (RXN-9632 (|Palmitoyl-ACPs|) NIL) PRIMARIES - (RXN-9623 (PALMITATE) (PALMITYL-COA)) PRIMARIES - (RXN-9548 NIL (STEARIC_ACID)) REACTION-LAYOUT - (RXN-9548 (:LEFT-PRIMARIES |Stearoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES STEARIC_ACID)) REACTION-LAYOUT - (RXN-9635 (:LEFT-PRIMARIES |Stearoyl-ACPs|) (:DIRECTION :R2L) (:RIGHT-PRIMARIES |Octadec-2-enoyl-ACPs|)) REACTION-LAYOUT - (RXN-9634 (:LEFT-PRIMARIES |R-3-hydroxystearoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Octadec-2-enoyl-ACPs|)) REACTION-LAYOUT - (RXN-9633 (:LEFT-PRIMARIES |R-3-hydroxystearoyl-ACPs|) (:DIRECTION :R2L) (:RIGHT-PRIMARIES |3-oxo-stearoyl-ACPs|)) REACTION-LAYOUT - (RXN-9632 (:LEFT-PRIMARIES |Palmitoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |3-oxo-stearoyl-ACPs|)) REACTION-LIST - RXN-9548 REACTION-LIST - RXN-9635 REACTION-LIST - RXN-9634 REACTION-LIST - RXN-9633 REACTION-LIST - RXN-9632 SYNONYMS - stearic acid biosynthesis // UNIQUE-ID - PWY-5147 TYPES - Oleate-Biosynthesis COMMON-NAME - oleate biosynthesis I (plants) CITATIONS - :EV-COMP-AINF:3497824359:liya CREDITS - SRI CREDITS - |caspi| PATHWAY-LINKS - (|Oleoyl-ACPs| PWY-5995) PATHWAY-LINKS - (OLEATE-CPD PWY-1121 PWY-4942) PATHWAY-LINKS - (|Stearoyl-ACPs| PWY-5989) PREDECESSORS - (3.1.2.14-RXN RXN-7903) PREDECESSORS - (RXN-7903) PRIMARIES - (3.1.2.14-RXN NIL (OLEATE-CPD)) PRIMARIES - (RXN-7903 (|Stearoyl-ACPs|) (|Oleoyl-ACPs|)) REACTION-LAYOUT - (3.1.2.14-RXN (:LEFT-PRIMARIES |Oleoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES OLEATE-CPD)) REACTION-LAYOUT - (RXN-7903 (:LEFT-PRIMARIES |Stearoyl-ACPs|) (:DIRECTION :L2R) (:RIGHT-PRIMARIES |Oleoyl-ACPs|)) REACTION-LIST - 3.1.2.14-RXN REACTION-LIST - RXN-7903 SYNONYMS - stearoyl-ACP desaturation pathway // UNIQUE-ID - PWY-4441 TYPES - Activation COMMON-NAME - DIMBOA-glucoside degradation CITATIONS - :EV-COMP-AINF:3497824357:liya PREDECESSORS - (RXN-7082) PRIMARIES - (RXN-7082 (CPD-6562) (CPD-6366)) REACTION-LAYOUT - (RXN-7082 (:LEFT-PRIMARIES CPD-6562) (:DIRECTION :L2R) (:RIGHT-PRIMARIES CPD-6366)) REACTION-LIST - RXN-7082 //