174 Conserved Domain Database models. CDD 1 {"type": "domain"}
16 Dust is a program that identifies low-complexity sequences (regions of the genome with a biased distribution of nucleotides, such as a repeat). The Dust module is widely used with BLAST to prevent 'sticky' regions from determining false hits. Low complexity (Dust) 1 \N
1 Assembly gap feature annotated in ENA Assembly gap (ENA) 1 \N
175 CATH/Gene3D families. Gene3D 1 {"type": "domain"}
194 \N GOA annotation 0 \N
23 GO term derived transitively from a UniProt record UniProt-derived GO term 0 \N
69 Gene encoding an enzyme annotated at the Plant Reactome. Plant Reactome 1 \N
176 HAMAP families. HAMAP 1 {"type": "domain"}
177 PANTHER families. PANTHER 1 {"type": "domain"}
192 InterPro2GO mapping, defined by InterPro. InterPro2GO mapping 0 \N
193 InterPro2Pathway mapping from InterproScan results. InterPro2Pathway mapping 0 \N
187 Intrinsically disordered regions predicted by MobiDB lite. MobiDB lite 1 {"type": "feature"}
188 Coiled-coil regions predicted by Ncoils. Coiled-coils (Ncoils) 1 {"type": "feature"}
178 Protein domains and motifs from the Pfam database. Pfam 1 {"type": "domain"}
180 Protein domains and motifs from the PROSITE profiles database. PROSITE profiles 1 {"type": "domain"}
179 Protein domains and motifs from the PIR (Protein Information Resource) Superfamily database. PIRSF 1 {"type": "domain"}
181 Protein fingerprints (groups of conserved motifs) from the PRINTS database. Prints 1 {"type": "domain"}
18 Repeats detected using the MIPS Repeat Database (REdat) using RepeatMasker. Repeats: REdat 1 \N
19 Repeats identified by RepeatMasker, using the Repbase library of repeat profiles. Repeats: Repbase 1 \N
182 Protein domains and motifs from the PROSITE patterns database. PROSITE patterns 1 {"type": "domain"}
191 Low complexity peptide sequences identified by Seg. Low complexity (Seg) 1 {"type": "feature"}
183 Structure-Function Linkage Database families. SFLD 1 {"type": "domain"}
189 Signal peptide cleavage sites predicted by SignalP. Cleavage site (Signalp) 1 {"type": "feature"}
184 Protein domains and motifs from the SMART database. SMART 1 {"type": "domain"}
185 Protein domains and motifs from the SUPERFAMILY database. Superfamily 1 {"type": "domain"}
15 Tef Improvement Project TIP annotation 1 {"caption": "Genes", "colour_key": "[gene.logic_name]_[gene.biotype]", "default": {"MultiBottom": "collapsed_label", "MultiTop": "gene_label", "alignsliceviewbottom": "as_collapsed_label", "contigviewbottom": "transcript_label", "contigviewtop": "gene_label", "cytoview": "gene_label"}, "key": "ensembl", "label_key": "[biotype]", "name": "Genes annotated with maker"}
186 Protein domains and motifs from the TIGRFAM database. TIGRFAM 1 {"type": "domain"}
190 Transmembrane helices predicted by TMHMM. Transmembrane helices 1 {"type": "feature"}
17 Tandem Repeats Finder locates adjacent copies of a pattern of nucleotides. Tandem repeats (TRF) 1 \N
20 UniParc mapping based on sequence checksums UniParc cross-reference 0 \N
21 UniProt cross-reference derived transitively from a UniParc identifier UniParc-derived cross-reference 0 \N
22 Cross-reference derived transitively from a UniProt record UniProt-derived cross-reference 0 \N
24 Cross references to UniProt Swiss-Prot (reviewed) proteins, determined by alignment against the proteome with blastp. UniProt reviewed proteins 0 \N
25 Cross references to UniProt TrEMBL (unreviewed) proteins, determined by alignment against the proteome with blastp. UniProt unreviewed proteins 0 \N