Gramene Protein Search

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Protein Database
Search by Acc, name, SPTrEMBL ID, Protein_ID(PID), GI number, cultivar. [ e.g. P93436 , alcohol , indica ] HELP

Protein Database at Gramene attempts to provide collective information on Swissprot-Trembl protein entries from family Poaceae (Grasses).

You can search the protein database using either of the protein name / gene name / species / cultivar/ SWISSPROT accession number / SPTrEMBL ID / Protein Sequence Identifier (Protein_ID) / Genbank GI number. An advanced search option is available to set query filters on above choices and the selected species. You may like to browse the tutorial before you start using the database or may like to seek the help document.

The protein entries are annotated by associating the following three concepts of Gene Ontology (GO) .

Molecular function of the gene product (protein).
Biological process in which the gene product (protein) is involved .
Cellular component where the gene product (protein) is localized.

These associations assigned are based on annotations described either in the published reports or generated by in-silico experiments. Each association is supported with an evidence (reference) and the evidence code (experiment type). To learn more on the ontologies please visit the ontology section of Gramene.

GO Slim, a quick way to your favorite proteins via Gene Ontology terms
Browse by Molecular Function catalytic activity (enzyme) enzyme regulator signal transducer antioxidant activity structural molecule activity transporter transcription regulator translation regulator DNA binding RNA binding nucleotide binding	Browse by Biological Process amino acid metabolism carbohydrate metabolism lipid metabolism nucleic acid metabolism protein metabolism cell cycle cell organization cell communication stress response transport electron transprot photosynthesis energy pathway	Browse by Cellular Component nucleus mitochondria plastid endoplasmic reticulum cytosol ribosome chromosome cytoskeleton membrane

Documents:

Gene ontology (GO) associations:
Associations are based on Gramene curation. Download in bulk from:

Gramene [download]
GO Consortium [download]
For help on association file please consult the README file

Download Sequences:

Gramene
SP_TrEMBL:
Oryza, Zea, Avena, Hordeum,
Triticum, Aegilops, Secale, Sorghum,
Pennisetum, Lolium, Saccharum,
O.sativa indica ( Yu et. al. 2002 )

Cellular localization predictions:
Predotar and TargetP were used to predict localization to plastid, mitochondria and secretory vesiclular localization.
The method used is described in Gramene reference 7047.

Download Predotar predictions
Download TargetP predictions

TMHMM (v. 2.0) was used to predict Transmembrane localization.
The method used is described in Gramene reference 7047.

Download TMHMM predictions