Linking back to Gramene

[Database]   [URL information]   [Protein Database]  

Database

Gramene Database Release 19, October 2005
Rice Protein Database Release 19, October 2005

URL information

Generic_url:  http://www.gramene.org
Sequenced Rice genome http://www.gramene.org/Oryza_sativa/
BLAST search http://www.gramene.org/Multi/blastview
Physical and Genetic maps http://www.gramene.org/db/cmap/map_search
Molecular Markers search http://www.gramene.org/db/markers/marker_view
Rice Protein Database search http://www.gramene.org/db/protein/protein_advanced
url_syntax:Accession number*
url_syntax:SWALL / SWISS PROT ID
url_syntax:Gramene internal ID
(For more information see below ) 		http://www.gramene.org/db/protein/protein_search?acc=Accession number
http://www.gramene.org/db/protein/protein_search?swall=SWALL ID
http://www.gramene.org/db/protein/protein_search?protein_id=Gramene ID

Ontology search http://www.gramene.org/plant_ontology/index.html
Gene mutants http://www.gramene.org/rice_mutant/index.html
QTL search http://www.gramene.org/db/qtl/qtl_display
Literature search http://www.gramene.org/literature/
Sequenced Maize genome http://www.gramene.org/Zea_mays/
Sequenced Arabidopsis genomehttp://www.gramene.org/Arabidopsis_thaliana/

* (SWISSPROT Accession numbers)

Protein Database links

Use the Protein identifier file swissprot_linkback.txt

File format is as follows:
Accession number|SWALL or SWISSPROT ID|Gramene Primary Identifier|Secondary Identifier
 for example:
P19395|UGST_ORYSA|P19395|78073

Using the SWISSPROT accession number (which is also our primary identifier):
http://www.gramene.org/db/protein/protein_search?acc=accession number
http://www.gramene.org/db/protein/protein_search?acc=P19395

Using the SWISSPROT/SWALL ID:
http://www.gramene.org/db/protein/protein_search?swall=SWISSPROT ID
http://www.gramene.org/db/protein/protein_search?swall=UGST_ORYSA

Using the Gramene internal IDs (Gramene's secondary ID):
http://www.gramene.org/db/protein/protein_search?protein_id=Gramene ID
http://www.gramene.org/db/protein/protein_search?protein_id=78073

Want Gramene IDs corresponding to GenBank IDs: click here.

For more help on link back to Rice Protein Database (RPD): click here.