/*
This documents the processing of TIGR v4 rice genome - SSR alignments for Cornell and IRMI SSRs
Sharon Wei
*/
                                                                                                                                                             
                                                                                                                                                             
The 17,010 SSR primers are from gramene markers database.
                                                                                                                                                             
The SSRs are aligned to TIGR Genomic assembly v4 using e-PCR.  e-PCR was run with setting
s of 180-bp margin and 0 allowed mismatches, resulting in 15087 matches.
                                                                                                                                                             
The matches are from 14,611 unique primers (85.9% of the total 17,010).