Gramene Ontology Statistics

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Ontologies in Gramene

Plant Ontology

Plant Structure (morphology, organs, tissue and cell types)(PO)

Growth stages (plant growth and developmental stages)(GRO)

Trait Ontology (TO)

Plant traits and phenotypes

Gene Ontology (GO)

Molecular function

Biological process

Cellular component

Environment Ontology (EO)

Gramene's taxonomy ontology (GR_tax)

Ontologies Database Statistics

V24
March 2007 V23
November 2006 V22
September 2006 V21
May 2006 V20
March 2006 V19
October 2005 V18 V17 V16 V15 V14

Ontology Terms

No. GO terms 23,634 22,568 21,517 20,659 20,530 19,498 18,969

No. TO terms 779 778 769 722 722 693 661

No. PO terms 797 787 778 754 730 684 682

No. GRO terms 236 236 236 236 236 236 236

No. EO terms 497 491 490 490 490 490 479

No. GR_tax terms 2,526 2,478 2,407 2,404 2,241 2,204 2,156

Total 28,752 27,619 26,471 25,265 24,949 23,805 23,183

No. Ontology Associations

GO Associations 347,632 258,754 245,392 240,769 225,211 194,631 194002

GO: Biological Process Associations 99,121 72,758 70,302 68,402 63,828 54,811 54687

GO: Cellular Component Associations 114,263 86,045 75,316 73,796 70,701 63,606 63166

GO: Molecular Function Associations 134,248 99,951 99,774 98,571 90,682 76,214 76149

TO Associations 13,161 12,358 11,791 11,357 10,970 10,679 9182

PO Associations 14,180 2,063 1,354 1,210 1,188 896 856

GRO Associations 4,699 1,945 1,893 1,751 1,674 1,343 1332

EO Associations 552 413

Gr_Tax Associations 117,906 113,876 97,518 96,078 95,041 79,644 77704

Total Associations: 512,041 391,761 360,376 351,487 334,365 287,193 283,076

No. Terms in Ontology Associations

GO 2,474 1,710 1,674 1,616 1,518 1,479 1477

GO: Biological Process terms 983 622 604 565 536 514 510

GO: Cellular Component 259 204 198 189 178 175 176

GO: Molecular Function 1,232 884 872 862 804 790 791

TO 460 423 387 376 375 365 331

PO 138 85 74 70 70 47 44

GRO 94 42 38 38 37 10 9

EO 49 44

Gr_tax 1,246 1,186 1,120 1,074 1,040 1,002 952

Total 4,515 3,532 3,368 3,211 3,077 2,903 2813

Proteins with Associations

GO Associations 65,793 63,842 55,211 54,349 54,194 49,565 49249

GO Biological Process Associations 27,578 27,086 25,445 25,009 24,986 23,997 23905

GO Cellular Component Associations 59,030 57,074 48,436 47,764 47,619 42,982 42688

GO Molecular Function Associations 21,626 21,537 21,552 21,122 21,129 21,138 21096

TO Associations 130 81 64 9 2

PO Associations 162 113 93 47 47 21 19

GRO Associations 176 116 98 70 49

EO Associations 143 87 68 47 26

Gr_tax Associations 97,030 93,712 77,804 76,745 76,512 68,122 67647

Ensemble Genes with Associations

GO Associations 24,386 24,386 24,386 23,286 21,369 21,369 21369

GO: Biological Process Associations 18,759 18,759 18,759 18,759 16,401 16,401 16401

GO Cellular Component Associations 7,185 7,185 7,185 7,185 5,273 5,273 5273

GO Molecular Function Associations 23,005 23,005 23,005 23,005 20,016 20,016 20016

Ensemble Maize Genes with Associations

GO Associations 6,097 6,097 6,097 6,097

GO: Biological Process Associations 5,018 5,018 5,018 5,018

GO: Cellular Component Associations 966 966 966 966

GO: w/Molecular Function Associations 5,974 5,974 5,974 5,974

Ensemble Arabidopsis Genes with Associations

GO Associations 25,727

GO: Biological Process Associations 21,779

GO: Cellular Component Associations 22,986

GO: w/Molecular Function Associations 23,001

No. Genes with Associations

w/GO Associations 2,075 1,376 832

GO: Biological Brocess Associations 1,835 1,154 730

GO: Cellular Component Associations 1,066 622 378

GO: Molecular Function Associations 678 499 293

TO associations 936 678 453 447 435 428 420

PO associations 1,321 773 474 468 466 430 423

GRO associations 995 511 500 496 482 430 423

EO associations 112 81 7 66 50

Gr_tax associations 9,227 8,783 8,542 8,474 8,215 1,488 1488

QTL with Ontology Associations

TO Associations 11,209 10,961 10,791 10,495 10,147 9,871 8396

Plant Structure Associations 11,173 10,961 10,791 10,495 10,147 9,871 8396

Gr_tax Associations 11,209 10,961 10,791 10,495 10,147 9,871 8410

No. Marker library with Associations

PO Associations 202 202 201 201 201

GRO Associations 200 200 200 200 200

EO Associations 201 201 201 201 201

Marker species with Gr_tax Associations 245 228 212 207

Map sets with Gr_tax Associations 195 192 169 157 167 163 159

Associations by Evidence Type

Associations with only non-IEA 261,328 179,712 152,785 173,765 171,964 149,226 145367

Associations with only IEA 247,085 208,543 204,827 175,662 160,340 135,875 135572

Associations both IEA and non-IEA 3,628 3,506 2,764 2,988 2,061 2,092 2137

Evidences in Associations 421,147 389,563 401,784 381,218 333,143 328267

No. IEA Evidences in Associations 212,387 207,928 200,460 185,166 160,809 160457

No. non-IEA evidences in Associations 208,760 181,635 201,324 196,052 172,334 167810

Literature references used as Evidence in Associations 2,042 2,986 2,988 1,802 1,772 1732

	V24 March 2007	V23 November 2006	V22 September 2006	V21 May 2006	V20 March 2006	V19 October 2005	V18	V17	V16	V15	V14
Ontology Terms
No. GO terms	23,634	22,568	21,517	20,659	20,530	19,498	18,969
No. TO terms	779	778	769	722	722	693	661
No. PO terms	797	787	778	754	730	684	682
No. GRO terms	236	236	236	236	236	236	236
No. EO terms	497	491	490	490	490	490	479
No. GR_tax terms	2,526	2,478	2,407	2,404	2,241	2,204	2,156
Total	28,752	27,619	26,471	25,265	24,949	23,805	23,183

No. Ontology Associations
GO Associations	347,632	258,754	245,392	240,769	225,211	194,631	194002
GO: Biological Process Associations	99,121	72,758	70,302	68,402	63,828	54,811	54687
GO: Cellular Component Associations	114,263	86,045	75,316	73,796	70,701	63,606	63166
GO: Molecular Function Associations	134,248	99,951	99,774	98,571	90,682	76,214	76149
TO Associations	13,161	12,358	11,791	11,357	10,970	10,679	9182
PO Associations	14,180	2,063	1,354	1,210	1,188	896	856
GRO Associations	4,699	1,945	1,893	1,751	1,674	1,343	1332
EO Associations	552	413
Gr_Tax Associations	117,906	113,876	97,518	96,078	95,041	79,644	77704
Total Associations:	512,041	391,761	360,376	351,487	334,365	287,193	283,076

No. Terms in Ontology Associations
GO	2,474	1,710	1,674	1,616	1,518	1,479	1477
GO: Biological Process terms	983	622	604	565	536	514	510
GO: Cellular Component	259	204	198	189	178	175	176
GO: Molecular Function	1,232	884	872	862	804	790	791
TO	460	423	387	376	375	365	331
PO	138	85	74	70	70	47	44
GRO	94	42	38	38	37	10	9
EO	49	44
Gr_tax	1,246	1,186	1,120	1,074	1,040	1,002	952
Total	4,515	3,532	3,368	3,211	3,077	2,903	2813

Proteins with Associations
GO Associations	65,793	63,842	55,211	54,349	54,194	49,565	49249
GO Biological Process Associations	27,578	27,086	25,445	25,009	24,986	23,997	23905
GO Cellular Component Associations	59,030	57,074	48,436	47,764	47,619	42,982	42688
GO Molecular Function Associations	21,626	21,537	21,552	21,122	21,129	21,138	21096
TO Associations	130	81	64	9	2
PO Associations	162	113	93	47	47	21	19
GRO Associations	176	116	98	70	49
EO Associations	143	87	68	47	26
Gr_tax Associations	97,030	93,712	77,804	76,745	76,512	68,122	67647

Ensemble Genes with Associations
GO Associations	24,386	24,386	24,386	23,286	21,369	21,369	21369
GO: Biological Process Associations	18,759	18,759	18,759	18,759	16,401	16,401	16401
GO Cellular Component Associations	7,185	7,185	7,185	7,185	5,273	5,273	5273
GO Molecular Function Associations	23,005	23,005	23,005	23,005	20,016	20,016	20016

Ensemble Maize Genes with Associations
GO Associations	6,097	6,097	6,097	6,097
GO: Biological Process Associations	5,018	5,018	5,018	5,018
GO: Cellular Component Associations	966	966	966	966
GO: w/Molecular Function Associations	5,974	5,974	5,974	5,974

Ensemble Arabidopsis Genes with Associations
GO Associations	25,727
GO: Biological Process Associations	21,779
GO: Cellular Component Associations	22,986
GO: w/Molecular Function Associations	23,001

No. Genes with Associations
w/GO Associations	2,075	1,376	832
GO: Biological Brocess Associations	1,835	1,154	730
GO: Cellular Component Associations	1,066	622	378
GO: Molecular Function Associations	678	499	293
TO associations	936	678	453	447	435	428	420
PO associations	1,321	773	474	468	466	430	423
GRO associations	995	511	500	496	482	430	423
EO associations	112	81	7	66	50
Gr_tax associations	9,227	8,783	8,542	8,474	8,215	1,488	1488

QTL with Ontology Associations
TO Associations	11,209	10,961	10,791	10,495	10,147	9,871	8396
Plant Structure Associations	11,173	10,961	10,791	10,495	10,147	9,871	8396
Gr_tax Associations	11,209	10,961	10,791	10,495	10,147	9,871	8410

No. Marker library with Associations
PO Associations	202	202	201	201	201
GRO Associations	200	200	200	200	200
EO Associations	201	201	201	201	201

Marker species with Gr_tax Associations	245	228	212	207

Map sets with Gr_tax Associations	195	192	169	157	167	163	159

Associations by Evidence Type
Associations with only non-IEA	261,328	179,712	152,785	173,765	171,964	149,226	145367
Associations with only IEA	247,085	208,543	204,827	175,662	160,340	135,875	135572
Associations both IEA and non-IEA	3,628	3,506	2,764	2,988	2,061	2,092	2137

Evidences in Associations		421,147	389,563	401,784	381,218	333,143	328267
No. IEA Evidences in Associations		212,387	207,928	200,460	185,166	160,809	160457
No. non-IEA evidences in Associations		208,760	181,635	201,324	196,052	172,334	167810
Literature references used as Evidence in Associations		2,042	2,986	2,988	1,802	1,772	1732