Clone Sequence Status

Sequenced maize clones are associated with sequencing status, encoded within the GenBank submission record as a reserved keyword. The following table describes the keywords that can be attributed to maize clones, along with their clone count.

Keyword Description Clones*
HTGS_FULLTOP 2 x 384 paired-end attempts (6X coverage); completed shotgun phase; initial assembly 1231
HTGS_PREFIN Completed automated improvement phase (AutoFinish) 501
HTGS_ACTIVEFIN Active work being done by a finisher 1061
HTGS_IMPROVED Finished sequence in gene regions; improved regions will be indicated; once order and orientation of improved segments are confirmed, a comment will be added to indicate this 294
* as of 28 September 2006 [clones in GenBank]