| Q |
Why is the FPC map in genomic coordinates? |
| A |
We have transformed the FPC bands to genomic coordinates using a conversion factor of 4900 bases per band. This number, however, should be treated as an approximation. |
| Q |
Can I get my region sequenced first? |
| A |
No. BAC clones are selected uniformly across the 721 FPC contigs. Seeds have been selected and clones are walked off of these seeds. |
| Q |
How are tile seeds selected? |
| A |
There are 3400 seed clones selected based on several criteria. They must:
- be identified by both the agarose and HICF FPC maps
- be associated with at least one overgo marker
- have at least one BAC end sequence
- be at least 800kb apart
More information is available at Arizona Genomics Institute's Maize FPC Map page.
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| Q |
Why are all the BACs only in Phase I? |
| A |
Since the project aims to sequence the maize genespace, it is expected that regions on BACs that do not contain genes will not be sequenced to a finished quality. For more information, read about the various maize sequencing statuses.
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| Q |
The view has too many features. Can I turn off certain tracks? |
| A |
Yes. The menu above the browser window lets you control which tracks are visible and which are not. Furthermore, the browser uses cookies to remember the decision for 2 months.
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| Q |
Can I view aligned features that are stored in an external data source? |
| A |
Yes. The Ensembl browser supports DAS (distributed annotation system). Simply configure a URL to your custom data source (either through a pull-down menu or from the sidebar) and a dedicated track should appear. |
| Q |
When will I be able to BLAST my sequence against your database? |
| A |
The BLAST server will be available in December 2006. |