bin/cmap-fix-map-display-order.pl
bin/cmap_admin.pl
bin/cmap_create_stacked_maps.pl
bin/cmap_manageParsedAceFile.pl
bin/cmap_matrix_compare.pl
bin/cmap_metrics.pl
bin/cmap_parseagp.pl
bin/cmap_parsefpc.pl
bin/cmap_parseWashUAceFiles.pl
bin/cmap_reduce_cache_size.pl
bin/cmap_validate_config.pl
bin/profile-cmap-draw.pl
bin/validate_import_file.pl
BUGS
Build.PL
cgi-bin/cmap.PL
chado_integration/chado_integration.pod
chado_integration/chado_synchronize/chado_sync_tables.sql
chado_integration/chado_synchronize/cmap_synchronize_chado.pl
chado_integration/chado_synchronize/cmap_syncronize_chado.pl
chado_integration/chado_synchronize/INSTALL.pod
chado_integration/chado_synchronize/remove_sycn_from_chado.pl
chado_integration/chado_synchronize/TODO
chado_integration/chado_synchronize/trigger.template
chado_integration/linker_table.sql
chado_integration/README
Changes
CMapBuilder.pm
conf/example.conf
conf/global.conf.PL
CREDITS
data/sample_saved_link.xml
data/tabtest-dump.sql
data/tabtest-export.xml
data/tabtest.corr
data/tabtest1
data/tabtest2
docs/ADMINISTRATION.pod
docs/attributes-and-xrefs.pod
docs/cmap-schema-desc.html
docs/cmap-schema-graph.png
docs/cmap-schema.png
docs/CODE_OVERVIEW.pod
docs/gbrowse_integration.pod
docs/object-plugins.pod
htdocs/admintut/drawing-options.html
htdocs/admintut/feature-lanes.html
htdocs/admintut/feature-shapes.html
htdocs/admintut/images/feature-box.jpg
htdocs/admintut/images/feature-db.jpg
htdocs/admintut/images/feature-double-arrow.jpg
htdocs/admintut/images/feature-down-arrow.jpg
htdocs/admintut/images/feature-filled-box.jpg
htdocs/admintut/images/feature-in-triangle.jpg
htdocs/admintut/images/feature-line.jpg
htdocs/admintut/images/feature-out-triangle.jpg
htdocs/admintut/images/feature-span.jpg
htdocs/admintut/images/feature-up-arrow.jpg
htdocs/admintut/images/lanes-cluttered.jpg
htdocs/admintut/images/lanes-eq-priority.jpg
htdocs/admintut/images/lanes-uncluttered1.jpg
htdocs/admintut/images/lanes-uncluttered2.jpg
htdocs/admintut/images/lanes-with-priority.jpg
htdocs/admintut/images/options-baseline.jpg
htdocs/admintut/images/options-ce.jpg
htdocs/admintut/images/options-collapse-features.jpg
htdocs/admintut/images/options-font-size.jpg
htdocs/admintut/images/options-ft.jpg
htdocs/admintut/images/options-highlight.jpg
htdocs/admintut/images/options-image-size.jpg
htdocs/admintut/images/options-label-landmarks.jpg
htdocs/admintut/images/options-label-none.jpg
htdocs/admintut/images/options-min-corr.jpg
htdocs/admintut/images/options-start.jpg
htdocs/admintut/images/options-stop.jpg
htdocs/admintut/images/options-with-comp-map.jpg
htdocs/admintut/images/rel-map1.jpg
htdocs/admintut/images/rel-map2.jpg
htdocs/admintut/images/rel-map3.jpg
htdocs/admintut/images/shape-box.jpg
htdocs/admintut/images/shape-dumbbell.jpg
htdocs/admintut/images/shape-fat-box.jpg
htdocs/admintut/images/shape-fat-db.jpg
htdocs/admintut/images/shape-ibeam.jpg
htdocs/admintut/images/shape-skinny-box.jpg
htdocs/admintut/images/shape-skinny-db.jpg
htdocs/admintut/images/shape-too-dark.jpg
htdocs/admintut/index.html
htdocs/admintut/map-shapes.html
htdocs/admintut/multiple-data-sources.html
htdocs/admintut/relational-maps.html
htdocs/cmap.css
htdocs/gmod_logo.jpg
htdocs/minus.png
htdocs/plus.png
htdocs/pod-style.css
htdocs/tutorial/bw_first.gif
htdocs/tutorial/bw_index.gif
htdocs/tutorial/bw_last.gif
htdocs/tutorial/bw_next.gif
htdocs/tutorial/bw_prev.gif
htdocs/tutorial/index.html
htdocs/tutorial/page10.html
htdocs/tutorial/page11.html
htdocs/tutorial/page12.html
htdocs/tutorial/page13.html
htdocs/tutorial/page14.html
htdocs/tutorial/page15.html
htdocs/tutorial/page16.html
htdocs/tutorial/page17.html
htdocs/tutorial/page18.html
htdocs/tutorial/page19.html
htdocs/tutorial/page2.html
htdocs/tutorial/page20.html
htdocs/tutorial/page21.html
htdocs/tutorial/page22.html
htdocs/tutorial/page23.html
htdocs/tutorial/page24.html
htdocs/tutorial/page25.html
htdocs/tutorial/page26.html
htdocs/tutorial/page27.html
htdocs/tutorial/page28.html
htdocs/tutorial/page29.html
htdocs/tutorial/page3.html
htdocs/tutorial/page30.html
htdocs/tutorial/page31.html
htdocs/tutorial/page32.html
htdocs/tutorial/page33.html
htdocs/tutorial/page34.html
htdocs/tutorial/page35.html
htdocs/tutorial/page36.html
htdocs/tutorial/page37.html
htdocs/tutorial/page38.html
htdocs/tutorial/page39.html
htdocs/tutorial/page4.html
htdocs/tutorial/page40.html
htdocs/tutorial/page41.html
htdocs/tutorial/page42.html
htdocs/tutorial/page43.html
htdocs/tutorial/page44.html
htdocs/tutorial/page45.html
htdocs/tutorial/page46.html
htdocs/tutorial/page47.html
htdocs/tutorial/page48.html
htdocs/tutorial/page49.html
htdocs/tutorial/page5.html
htdocs/tutorial/page50.html
htdocs/tutorial/page51.html
htdocs/tutorial/page52.html
htdocs/tutorial/page53.html
htdocs/tutorial/page54.html
htdocs/tutorial/page55.html
htdocs/tutorial/page56.html
htdocs/tutorial/page57.html
htdocs/tutorial/page58.html
htdocs/tutorial/page59.html
htdocs/tutorial/page6.html
htdocs/tutorial/page60.html
htdocs/tutorial/page61.html
htdocs/tutorial/page62.html
htdocs/tutorial/page63.html
htdocs/tutorial/page7.html
htdocs/tutorial/page8.html
htdocs/tutorial/page9.html
htdocs/tutorial/Slide1.jpg
htdocs/tutorial/Slide1.png
htdocs/tutorial/Slide10.jpg
htdocs/tutorial/Slide10.png
htdocs/tutorial/Slide11.jpg
htdocs/tutorial/Slide11.png
htdocs/tutorial/Slide12.jpg
htdocs/tutorial/Slide12.png
htdocs/tutorial/Slide13.jpg
htdocs/tutorial/Slide13.png
htdocs/tutorial/Slide14.jpg
htdocs/tutorial/Slide14.png
htdocs/tutorial/Slide15.jpg
htdocs/tutorial/Slide15.png
htdocs/tutorial/Slide16.jpg
htdocs/tutorial/Slide16.png
htdocs/tutorial/Slide17.jpg
htdocs/tutorial/Slide17.png
htdocs/tutorial/Slide18.jpg
htdocs/tutorial/Slide18.png
htdocs/tutorial/Slide19.jpg
htdocs/tutorial/Slide19.png
htdocs/tutorial/Slide2.jpg
htdocs/tutorial/Slide2.png
htdocs/tutorial/Slide20.jpg
htdocs/tutorial/Slide20.png
htdocs/tutorial/Slide21.jpg
htdocs/tutorial/Slide21.png
htdocs/tutorial/Slide22.jpg
htdocs/tutorial/Slide22.png
htdocs/tutorial/Slide23.jpg
htdocs/tutorial/Slide23.png
htdocs/tutorial/Slide24.jpg
htdocs/tutorial/Slide24.png
htdocs/tutorial/Slide25.jpg
htdocs/tutorial/Slide25.png
htdocs/tutorial/Slide26.jpg
htdocs/tutorial/Slide26.png
htdocs/tutorial/Slide27.jpg
htdocs/tutorial/Slide27.png
htdocs/tutorial/Slide28.jpg
htdocs/tutorial/Slide28.png
htdocs/tutorial/Slide29.jpg
htdocs/tutorial/Slide29.png
htdocs/tutorial/Slide3.jpg
htdocs/tutorial/Slide3.png
htdocs/tutorial/Slide30.jpg
htdocs/tutorial/Slide30.png
htdocs/tutorial/Slide31.jpg
htdocs/tutorial/Slide31.png
htdocs/tutorial/Slide32.jpg
htdocs/tutorial/Slide32.png
htdocs/tutorial/Slide33.jpg
htdocs/tutorial/Slide33.png
htdocs/tutorial/Slide34.jpg
htdocs/tutorial/Slide34.png
htdocs/tutorial/Slide35.jpg
htdocs/tutorial/Slide35.png
htdocs/tutorial/Slide36.jpg
htdocs/tutorial/Slide36.png
htdocs/tutorial/Slide37.jpg
htdocs/tutorial/Slide37.png
htdocs/tutorial/Slide38.jpg
htdocs/tutorial/Slide38.png
htdocs/tutorial/Slide39.jpg
htdocs/tutorial/Slide39.png
htdocs/tutorial/Slide4.jpg
htdocs/tutorial/Slide4.png
htdocs/tutorial/Slide40.jpg
htdocs/tutorial/Slide40.png
htdocs/tutorial/Slide41.jpg
htdocs/tutorial/Slide41.png
htdocs/tutorial/Slide42.jpg
htdocs/tutorial/Slide42.png
htdocs/tutorial/Slide43.jpg
htdocs/tutorial/Slide43.png
htdocs/tutorial/Slide44.jpg
htdocs/tutorial/Slide44.png
htdocs/tutorial/Slide45.jpg
htdocs/tutorial/Slide45.png
htdocs/tutorial/Slide46.jpg
htdocs/tutorial/Slide46.png
htdocs/tutorial/Slide47.jpg
htdocs/tutorial/Slide47.png
htdocs/tutorial/Slide48.png
htdocs/tutorial/Slide49.png
htdocs/tutorial/Slide5.jpg
htdocs/tutorial/Slide5.png
htdocs/tutorial/Slide50.png
htdocs/tutorial/Slide51.png
htdocs/tutorial/Slide52.png
htdocs/tutorial/Slide53.png
htdocs/tutorial/Slide54.png
htdocs/tutorial/Slide55.png
htdocs/tutorial/Slide56.png
htdocs/tutorial/Slide57.png
htdocs/tutorial/Slide58.png
htdocs/tutorial/Slide59.png
htdocs/tutorial/Slide6.jpg
htdocs/tutorial/Slide6.png
htdocs/tutorial/Slide60.png
htdocs/tutorial/Slide61.png
htdocs/tutorial/Slide62.png
htdocs/tutorial/Slide63.png
htdocs/tutorial/Slide7.jpg
htdocs/tutorial/Slide7.png
htdocs/tutorial/Slide8.jpg
htdocs/tutorial/Slide8.png
htdocs/tutorial/Slide9.jpg
htdocs/tutorial/Slide9.png
INSTALL.pod
lib/Bio/GMOD/CMap.pm
lib/Bio/GMOD/CMap/Admin.pm
lib/Bio/GMOD/CMap/Admin/Export.pm
lib/Bio/GMOD/CMap/Admin/GBrowseLiason.pm
lib/Bio/GMOD/CMap/Admin/Import.pm
lib/Bio/GMOD/CMap/Admin/ImportAlignments.pm
lib/Bio/GMOD/CMap/Admin/ImportCorrespondences.pm
lib/Bio/GMOD/CMap/Admin/MakeCorrespondences.pm
lib/Bio/GMOD/CMap/Admin/ManageLinks.pm
lib/Bio/GMOD/CMap/Admin/SavedLink.pm
lib/Bio/GMOD/CMap/Apache.pm
lib/Bio/GMOD/CMap/Apache/AdminViewer.pm
lib/Bio/GMOD/CMap/Apache/CorrespondenceMenu.pm
lib/Bio/GMOD/CMap/Apache/CorrespondenceViewer.pm
lib/Bio/GMOD/CMap/Apache/DataDownloader.pm
lib/Bio/GMOD/CMap/Apache/EvidenceTypeViewer.pm
lib/Bio/GMOD/CMap/Apache/FeatureAliasViewer.pm
lib/Bio/GMOD/CMap/Apache/FeatureSearch.pm
lib/Bio/GMOD/CMap/Apache/FeatureTypeViewer.pm
lib/Bio/GMOD/CMap/Apache/FeatureViewer.pm
lib/Bio/GMOD/CMap/Apache/HelpViewer.pm
lib/Bio/GMOD/CMap/Apache/Index.pm
lib/Bio/GMOD/CMap/Apache/LinkViewer.pm
lib/Bio/GMOD/CMap/Apache/Login.pm
lib/Bio/GMOD/CMap/Apache/MapSearch.pm
lib/Bio/GMOD/CMap/Apache/MapSetViewer.pm
lib/Bio/GMOD/CMap/Apache/MapTypeViewer.pm
lib/Bio/GMOD/CMap/Apache/MapViewer.pm
lib/Bio/GMOD/CMap/Apache/MatrixViewer.pm
lib/Bio/GMOD/CMap/Apache/SavedLinkViewer.pm
lib/Bio/GMOD/CMap/Apache/SpeciesViewer.pm
lib/Bio/GMOD/CMap/Apache/SpiderViewer.pm
lib/Bio/GMOD/CMap/Apache/ViewFeatureOnMap.pm
lib/Bio/GMOD/CMap/Config.pm
lib/Bio/GMOD/CMap/Constants.pm.PL
lib/Bio/GMOD/CMap/Data.pm
lib/Bio/GMOD/CMap/Data/Generic.pm
lib/Bio/GMOD/CMap/Data/MySQL.pm
lib/Bio/GMOD/CMap/Data/Oracle.pm
lib/Bio/GMOD/CMap/Drawer.pm
lib/Bio/GMOD/CMap/Drawer/Glyph.pm
lib/Bio/GMOD/CMap/Drawer/Map.pm
lib/Bio/GMOD/CMap/Utils.pm
LICENSE
MANIFEST			This list of files
META.yml
README
SIGNATURE
sql/cmap.create.mysql
sql/cmap.create.oracle
sql/cmap.create.postgresql
sql/cmap.create.sqlite
sql/cmap.create.sybase
sql/cmap_gbrowse.adapt.mysql
sql/cmap_gbrowse.create.mysql
templates/admin_attribute_create.tmpl
templates/admin_attribute_edit.tmpl
templates/admin_attributes_view.tmpl
templates/admin_colors_view.tmpl
templates/admin_confirm_delete.tmpl
templates/admin_corr_evidence_create.tmpl
templates/admin_corr_evidence_edit.tmpl
templates/admin_corr_evidence_type_view.tmpl
templates/admin_corr_evidence_types_view.tmpl
templates/admin_dbxref_create.tmpl
templates/admin_dbxref_edit.tmpl
templates/admin_dbxrefs_view.tmpl
templates/admin_error.tmpl
templates/admin_feature_alias_create.tmpl
templates/admin_feature_alias_edit.tmpl
templates/admin_feature_alias_view.tmpl
templates/admin_feature_corr_create.tmpl
templates/admin_feature_corr_edit.tmpl
templates/admin_feature_corr_view.tmpl
templates/admin_feature_create.tmpl
templates/admin_feature_edit.tmpl
templates/admin_feature_search.tmpl
templates/admin_feature_type_view.tmpl
templates/admin_feature_types_view.tmpl
templates/admin_feature_view.tmpl
templates/admin_footer.tmpl
templates/admin_header.tmpl
templates/admin_home.tmpl
templates/admin_map_create.tmpl
templates/admin_map_edit.tmpl
templates/admin_map_set_create.tmpl
templates/admin_map_set_edit.tmpl
templates/admin_map_set_view.tmpl
templates/admin_map_sets_view.tmpl
templates/admin_map_type_view.tmpl
templates/admin_map_types_view.tmpl
templates/admin_map_view.tmpl
templates/admin_species_create.tmpl
templates/admin_species_edit.tmpl
templates/admin_species_view.tmpl
templates/admin_species_view_one.tmpl
templates/admin_xref_create.tmpl
templates/admin_xref_edit.tmpl
templates/admin_xrefs_view.tmpl
templates/admin_xrefs_view_embedded.tmpl
templates/cmap_viewer.tmpl
templates/cmap_viewer_comparative_map_select.tmpl
templates/correspondence_detail.tmpl
templates/correspondence_menu.tmpl
templates/data_downloader.tmpl
templates/error.tmpl
templates/evidence_type_info.tmpl
templates/feature_alias_detail.tmpl
templates/feature_detail.tmpl
templates/feature_search.tmpl
templates/feature_type_info.tmpl
templates/footer.tmpl
templates/header.tmpl
templates/help_correspondence.tmpl
templates/help_evidence_type_info.tmpl
templates/help_feature_alias_details.tmpl
templates/help_feature_details.tmpl
templates/help_feature_search.tmpl
templates/help_feature_type_info.tmpl
templates/help_header.tmpl
templates/help_imported_links.tmpl
templates/help_map_details.tmpl
templates/help_map_search.tmpl
templates/help_map_set_info.tmpl
templates/help_map_type_info.tmpl
templates/help_map_viewer.tmpl
templates/help_matrix.tmpl
templates/help_quick_start.tmpl
templates/help_saved_links.tmpl
templates/help_species_info.tmpl
templates/index.tmpl
templates/link_viewer.tmpl
templates/login.tmpl
templates/map_detail_bottom.tmpl
templates/map_search.tmpl
templates/map_set_info.tmpl
templates/map_type_info.tmpl
templates/matrix.tmpl
templates/pager.tmpl
templates/saved_link_edit.tmpl
templates/saved_links_viewer.tmpl
templates/species_info.tmpl
templates/spider_viewer.tmpl
TODO
upgrade/cmap12conftocmap13.pl
upgrade/cmap_12_to_cmap_13.sql
upgrade/cmap_13_to_cmap_14.sql
upgrade/cmap_14_to_15.sql
upgrade/cmap_typetables_to_config.pl
upgrade/upgrade-12-to-13.pod
upgrade/upgrade-13-to-14.pod
upgrade/upgrade-14-to-15.pod
upgrade/upgrade-15-to-16.pod
upgrade/upgrade_attributes_xrefs_14_to_15.pl
upgrade/upgrade_config_14_to_15.pl
SIGNATURE    Added here by Module::Build
