#!/bin/ksh

dbconnect=$($GrameneCodeDir/scripts/get_dbconnection -n sequence)

#for loading MarkerTag


# Purge first:
echo 'delete from marker_clone where analysis=600;' | sqlplus $dbconnect

for infile in $@
do
    print "LOAD DATA
infile '$infile' 
append into table marker_clone
fields terminated by X'09'
TRAILING NULLCOLS
(marker,marker_accession,marker_start,marker_end,clone,clone_version,clone_start,clone_end,perc_id
,score CONSTANT 110
,analysis CONSTANT 600,program_name CONSTANT 'blat'
,id SEQUENCE(MAX,1))" >gmap.ctl
#orig was   clone,clone_version,clone_start,clone_end ,marker,perc_id,score 
    print loading $infile
    sqlldr $dbconnect control=gmap.ctl log=gmap.log
done
## marker_name, marker_accession, marker_start, marker_stop bac_accession, bac_version, bac_start, bac_stop, perc_identity
#RG653	AQ839798	0	434	AP003771	1	127872	128307	100

