III. List of gene markers maintained in the Rice Genetic Stock Center, IRRI_
(Compiled by G. S. Khush)
RGS Gene Symbol Linkage Group Character Genetic
No. Background
===============================================================================
001 tri X triangular hull Indica
(IR36)
002 ws, dl I, XI white stripe, droopy leaf Indica
003 ws, lg I, II white stripe, liguleless Indica
004 Cl I clustered spikelets Indica
005 Ps-1, Lh I, XI purple stigma-1, long hair Indica
006 gh-2 X gold hull-2 Indica
007 nl-1 VI+IX neck leaf-1 Indica
008 nl-1, bc-1 VI+IX, XI neck leaf-1, brittle culm-1 Indica
009 bc-1, gl-1 XI, XII brittle culm-1, glabrous-1 Indica
010 g IV long glume Indica
011 dp-2 VII depressed palea-2 Indica
012 pgl fgl linkage group pale green leaf Indica
013 fl fgl linkage group faded leaf Indica
014 la VIII lazy growth habit Indica
015 z-2 VIII zebra striped leaf-2 Indica
016 lg II liguleless Indica
017 eg III extra glume Indica
018 lax III lax panicle Indica
019 ch-1 XI chlorina leaves-1 Indica
020 dl XI droopy leaves Indica
021 v-l I virescent-1, whitish panicle Indica
022 bf brown furrow (IR36)
023 bc-3 X brittle culm-3 (not clear cut) Indica
024 ch-1, nl-1 X, VI+IX chlorina leaves-1, neck leaf-1 Indica
025 ch-1, gh-2 XI, X chlorina leaves-1, gold hull-2 Japonica
026 dt, wx VIII, I tillering dwarf, waxy Japonica
027 nl-1, spl-1 VI+IX, d-33 neck leaf-1, spotted leaf-1 Japonica
028 dl, dp-1, gl XI, I, XII droopy leaf, depressed palea-1, Japonica
glabrous
029 lg, v-1 I, XI liguleless, virescent-1 Japonica
030 lg, gh-2 I, X liguleless, gold hull-2 Japonica
031 lax, z-1 VIII, VIII lax panicle, zebra stripe leaf-1 Japonica
032 d-1, ops VI+IX, VI+IX "diakoku" dwarf, open spikelet Japonica
sterile
033 fl, I-Bf fgl linkage group, faded green leaf, inhibitor for Japonica
VII brown furrow on hull
034 lg, z-2 I, VIII liguleless, zebra striped leaf-2 Japonica
035 lg, spl-5 I, IV liguleless, spotted leaf-5 Japonica
036 lg, dk-1 I, X liguleless, "kyudai" dwarf-1 Japonica
037 lg, spl-3 I, XI liguleless, spotted leaf-3 Japonica
038 bl-1, gh-3 X, X brown discoloration of leaves and Japonica
glumes-1, gold hull-3
039 lg, fc I, XI liguleless, fine culm Japonica
040 dp-1, spl-4 I, I depressed palea-1, spotted leaf-4 Japonica
041 lg, nal-1 I, II liguleless, narrow leaf-1 Japonica
042 lg, d-1, nl-2 I, VI+IX, VI+IX liguleless, "daikoku" dwarf-1, Japonica
neck leaf-2
043 lg, bc-3 I, X liguleless, brittle culm-3 Japonica
044 lg, rk-1 I, II liguleless, round kernel-1 Japonica
045 ch-l, rl-2 XI, II chlorina-1, rolled leaf-2 Japonica
046 bc-3, gh-3 X, X brittle culm-3, gold hull Japonica
047 lg, rk-2 I, fgl liguleless, round kernel-2 Japonica
048 bc-1 XI brittle culm-1 Japonica
049 pgl fgl linkage group pale green leaf Japonica
053 gh-2 X Balilla mutant no. 10 (gold hull Japonica
mutant)
054 la VIII Balilla mutant no. 19 (lazy Japonica
mutant)
055 la VIII Cesariot mutant no. 28 (lazy Japonica
mutant)
061 gh-2 Cesariot mutant no. 13 (gold hull Japonica
mutant)
067 spl-1 Arlesienne mutant no. 10 (spotted Japonica
mutant)
070 tri X Americano mutant no. 8 Japonica
(triangular hull)
071 d-18 III Americano mutant no. 9 (dwarf Japonica
mutant)
073 la VIII Americano mutant no. 16 (lazy Japonica
mutant)
077 bl Cigalon mutant no. 20 (black leaf Japonica
spot)
078 wx, bf I glutinous, brown furrow Indica
079 Cl, Pr I, II clustered panicle, purple hull Indica
080 A, C III, I chromogen Indica
081 lg II liguleless (not clear cut) Indica
082 Pp, Pb, g III(V), II, IV purple pericarp, long glume Indica
083 wh II white hull Indica
084 ph, Bh II, II negative phenol reaction, black Indica
hull
085 drp dripping wet (not clear cut) Indica
086 Pn III purple node Indica
087 Pn, Pau III, III purple node, purple auricle Indica
088 anl angled leaf Indica
089 g, gh-2 IV, X long glume, gold hull-2 Indica
090 Rd,(Rc) red pericarp Indica
091 gh-2, wx X, I gold hull-2, glutinous Indica
092 Ps+ purple sheath Indica
093 gh-2, gl X, VI+IX gold hull-2, glabrous Indica
094 la VIII lazy Indica
095 nl neck leaf Indica
096 bl brown leaf spot Indica
097 bc-1, Bh, Ph brittle culm, black hull, Indica
098 wx, sk X, III(V) glutinous, scented kernel Indica
099 ch-1, spl-1 XI, d-33 chlorina leaves-1, spotted leaf-1 Indica
100 nal-2, g VII, IV narrow leaf-2, long glume Indica
101 rl-1, ri III, VI+IX rolled leaf-1, verticillate Indica
rachis
102 lhs(ops) VI+IX naked seed rice (rice-wheat Indica
hybrid F4)
103 eui VI+IX elongated uppermost internode Indica
104 lhs VI+IX long hull sterile Indica
105 ju-22 auricleless Indica
106 d-1, A, C, lg VI+IX, III, II, I dwarf-1, chromogen, liguleless Japonica
107 dw, A, C, lg X, III, I, II dwarf, chromogen liguleless Japonica
108 tri, lg X, II triangular hull, liguleless Japonica
109 dp-2, lg VII, II depressed palea-2, liguleless Japonica
110 dl, d-6 XI, IV droopy leaf, dwarf-6 Japonica
111 d-18, dl III, XI dwarf-18, droopy leaf Japonica
112 AC, dl, spl-2 III, I, XI chromogen, droopy leaf, spotted Japonica
leaf-2
113 ch-1, d-6 XI, IV chlorina leaves-1, dwarf-6 Japonica
114 Bp, ch-1 VII, XI bulrush-like panicle, chlorina Japonica
leaves-1
115 Dn, ch-1 VII, XI dense panicle, chlorina leaves-1 Japonica
116 ch-1, lg XI, II chlorina leaves-1, liguleless Japonica
117 wx, lg I, II glutinous, liguleless Japonica
118 dl, wx XI, I droopy leaf, glutinous Japonica
119 nal-2, -3, sp VIII, VIII, VIII narrow leaf-2, -3, short panicle Japonica
120 d-2, lg II, II dwarf-2, liguleless Japonica
121 d-11, lg II, II dwarf-11, liguleless Japonica
122 d-1, bl-1 VI+IX, X dwarf-1, black leaf spot-1 Japonica
123 d-1, spl-1 VI+IX, d-33 dwarf-1, spotted leaf-1 Japonica
124 nl-1, rl-1 VI+IX, III neck leaf-1, rolled leaf-1 Japonica
125 Pr, Pn, sp II, III, VIII purple pericarp, purple node, Japonica
short panicle
126 d-10, A, C, wxIII, III, I, I dwarf-10, chromogen, glutinous Japonica
127 dp-1, wx, ws I, I, I depressed palea-1, glutinous, Japonica
white stripe
128 bl, tri XI, X black leaf spot, triangular hull Japonica
129 nl-1, ri VI+IX, VI+IX neck leaf-1, verticillate rachis Japonica
130 spl-2, g, lg X, IV, II spotted leaf-2, long glume, Japonica
liguleless
131 v-1, wx XI, I virescent-1, glutinous Japonica
132 d-11, Pn II, III dwarf-11, purple node Japonica
133 dl, dp-1, Cl XI, I, I droopy leaf, depressed palea-1, Japonica
clustered spikelets
134 d-10, eg III, III dwarf-10, extra glume Japonica
135 Bp, fl VII, fgl group bulrush-like panicle, faded leaf Japonica
136 Dn, dp-2 VII, VII dense panicle, depressed palea-2 Japonica
137 d-30 gh-2 X, X "waisei-shirasasa" dwarf, gold Japonica
hull-2
138 d-32, lg X, II "kyudai" dwarf-4, liguleless Japonica
139 ch-4, lg I, II chlorina leaves-4, liguleless Japonica
140 spl-5, lg IV, II spotted leaf-5, liguleless Japonica
141 spl-7, wx, lg VI+IX, I, II spotted leaf-7, glutinous, Japonica
liguleless
142 rfs, lg' XI, II rolled fine stripes, liguleless Japonica
143 la VIII lazy growth Japonica
144 la, sp, z-1, lVIII, VIII, lazy growth, short panicle, zebra Japonica
VIII,II striped leaf-1, liguleless
145 v-2, spl-3 XI, XI virescent-2, spotted leaf-3 Japonica
146 dl, rfs XI, IV droopy leaf, rolled leaf fine Japonica
stripes
147 la, sp, dt VIII, VIII, VIII lazy, short panicle, tillering Japonica
dwarf
148 Dn, Bp, drp-2 VII, VII, VII dense panicle, bulrush-like Japonica
panicle, dripping wet-2
149 d-6, g, spl-5,IV, IV, IV, IV dwarf-6, long glume, spotted leaf Japonica
Rc -5, brown pericarp and seed coat
150 Dn, drp-1,dp-2VII, II, VII dense panicle, dripping wet- Japonica
1,depressed palea-2
151 lg, rk-1 II, II liguleless, round kernel-1 Japonica
152 bc-3, dk-1 II, X brittle culm-3, "kyudai" dwarf-1 Japonica
153 spl-6, lg III, II spotted leaf-6, liguleless Japonica
154 spl-6, lax lg III, I, II spotted leaf-6, lax panicle, Japonica
liguleless
155 I-Bf, eg,spl-6V, I, III inhibitor for brown furrow, extra Japonica
glume, leaf-6
156 bc-3, gh-3 X, X brittle culm-3, gold hull-3 Japonica
157 la, v-4 VIII, VIII lazy growth, virescent-4 Japonica
158 sp, Dk-3, lg VIII, VIII, II short panicle, dwarf "kyushu"-3, Japonica
liguleless
159 fc, ch-3, lg XI, XI, II fine culm, chlorina leaves-3, Japonica
liguleless
160 rk-2, lg fgl, II round kernel-2, liguleless Japonica
161 nl-1, gl VI, XII neck leaf-1, glabrous Japonica
162 nl-1, spl-7,riVI, VI+IX, VI+IX neck leaf-1, spotted leaf-7, Japonica
verticillate rachis
163 spl-8, lg VI+IX, II spotted leaf-8, liguleless Japonica
164 rl-2, A, C, dlII, III, I, XI rolled leaf-2, chromogen, droopy Japonica
leaf
165 d-18, fs-2 III, III dwarf-18, fine stripe-2 Japonica
166 lax, ch-5, A,CI, III, III, I lax panicle, chlorina leaves-5, Japonica
chromogen
167 ch-5, A, C, lg chlorina-5, chromogen, liguleless Japonica
168 v-6, lg III, II virescent-6, liguleless Japonica
169 v-6, lax III, I virescent-6, lax panicle Japonica
170 ch-6, lax III, I chlorina leaves-6, lax panicle Japonica
171 eg, dk-6 I, III extra glume, dwarf-kyushu-6 Japonica
172 rl-2, dk-2 II, III rolled leaf-2, dwarf-kyushu-5 Japonica
173 I-Bf,ch-1,fc,vV, XI, XI, XI, XI inhibitor for brown furrow, Japonica
-2,spl-3 chlorina leaves-1, fine culm,
virescent-2, spotted leaf-3
174 dl, bc-1, ch-2XI, XI, XI droopy leaf, brittle culm-1 Japonica
chlorina-2
175 dk-7, lg XI, II dwarf-kyushu-7, liguleless Japonica
176 ch-1, ch-3 fc XI, XI, XI chlorina leaves-1, chlorina Japonica
leaves-3, fine culm
177 drp-4, lg dripping wet-4, liguleless Japonica
178 fc, v-7 fine culm, virescent-7 Japonica
179 fc, v-7 fine culm, virescent-7 Japonica
180 ch-1, fc, v-5 XI, XI, XI chlorina leaves-1, fine culm, Japonica
viresecent-5
181 dl, dk-7 XI, XI droopy leaf, dwarf-kyushu-7 Japonica
182 bc-1, v-2,dk-7XI, XI, XI brittle culm-1, virescent-2, Japonica
dwarf-kyushu-7
183 dp-1, spl-4, I, I, I, II depressed palea-1, spotted leaf- Japonica
ws, lg 4, white stripe, liguleless
184 v-3, lg I, II virescent-3, liguleless Japonica
185 dl, dp-1, v-3 XI, I, I droopy leaf, depressed palea-1, Japonica
virescent-3
186 wx, v-3 I, I glutinous, virescent-3 Japonica
187 gh-3, dk-4 X, X gold hull-3, dwarf kyushu-4 Japonica
188 sp, v-4 VIII, VIII short panicle, virescent-4 Japonica
189 ylm, rk-1 II, II yellow leaf margin, round kernel- Japonica
1
190 v-1, ch-1 XI, XI virescent-1, chlorina-1 Japonica
191 spl-5, rfs IV, IV spotted leaf-5, rolled fine Japonica
stripe leaves
192 ch-1, v-3 XI, I chlorina leaves-1, virescent-3 Japonica
193 nl-1, spl-8 VI+IX, VI+IX neck leaf-1, spotted leaf-8 Japonica
194 fl, rk-2 fgl linkage group faded leaf, round kernel-2 Japonica
195 fl, rk-2, lg fgl linkage group, faded leaf, round kernel-2, Japonica
II liguleless
196 la, v-4, z-2 VIII, VIII, VII lazy growth, virescent-4, zebra Japonica
striped leaf-2
197 dl, bc-1,ch-2,XI, XI, XI, XI droopy leaf, brittle culm-1, Japonica
fc chlorina-2, fine culm
198 dl, z-2 XI, VIII droopy leaf, zebra leaf stripe-2 Japonica
199 drp-3, lg XI, II dripping wet-3, liguleless Japonica
200 dl, drp-3 XI, XI droopy leaf, dripping wet-3 Japonica
201 rl-3 rolled leaf-3 Japonica
202 pgl fgl linkage group pale green leaf Japonica
203 st, z-l striped leaf, zebra striped leaf Japonica
204 pl, M(spl) XI, ? droopy leaf, spotted leaf mutant Japonica
205 z-3 XI zebra striped leaf-3 Japonica
206 ch-4, dp-1 I, I chlorina leaves-4, depressed Japonica
palea-1
207 drp dripping wet Indica
208 gl, v-seg glabrous, virescent Indica
209 Lh(Hg) long hair(hairy glumes) Indica
210 ygl yellow green leaf Indica
211 C, A, P, V,Pr,I, III, II, ?, II, purple apiculus, virescent, Indica
gl I purple hull, glabrous
212 wx, gh, gl, bl glutinous, gold hull, glabrous, Indica
black leaf spot
214 d-31, nal II, ? dwarf-31, narrow leaf Indica
215 d-42, lg II, II dwarf-42, liguleless Indica
216 lax I nude panicle Indica
217 op open palea Japonica
218 shp sheathed panicle Indica
219 su, v-8 sugary, virescent-8 Japonica
220 bc, z-4 brittle culm, zebra stripes-4 Japonica
221 dp depressed palea Japonica
222 dp, sp ?, VIII depressed palea, short panicle Japonica
223 lg, la, dl, dBII, VIII, XI, d-33 liguleless, lazy growth habit, Japonica
droopy leaf, "bonsai" dwarf
224 wp-1 white panicle-1 Indica
225 wp-2 white panicle-2 Indica
226 chl-1 chlorina-1 (misra) Indica
227 RNMS-1 male sterile empty endosperm Indica
228 dr-1 double rice-1 Indica
229 Ps-1 I purple stigma Japonica
230 dl XI midribless-1 Indica
231 dl XI midribless-2 Indica
232 dl XI midribless-3 Indica
233 la lazy growth Indica
234 la VIII lazy growth Indica
235 Hg XII hairy glumes Japonica
236 md-1, sd-1 XII, III multiple pistil-1, semi-dwarf-1 Indica
237 Cl I clustered spikelets Indica
238 lg II liguleless Indica
239 Av I white stripes (Fs type) Indica
244 z-2 zebra striped leaf-2 (Misra) Indica
249 cl-6 chlorina leaves-6 Indica
256 d-l VI+IX cigar dwarf (R-17) Indica
257 d-l VI+IX cigar dwarf (R-385) Indica
258 purple rice (Crossa 2) Indica
259 la lazy Indica
262 spl-1, sd-1 d-33, III spotted leaf-1, semi-dwarf-1 Indica
263 chl-1, sd-1 XI, III chlorina leaves-1 (misra), semi Indica
dwarf-1
264 ygl, sd-1 ?, III yellow green leaf, semi-dwarf-1 Indica
265 shp, sd-1 sheathed panicle, semi-dwarf-1 Indica
266 mp-2, sd-1 IV(?), III multiple pistil-2, semi-dwarf-1 Indica
267 wp-1, v white panicle-1, virescent Indica
seedling
268 lax, sd-1 III, III lax panicle, semi-dwarf-1 Indica
269 Pl, lg II, II purple leaf, liguleless Japonica
270 lg, spl-9 II, ? liguleless, spotted leaf-9 Japonica
271 bgl-1, d-1,opsVI+IX, VI+IX, ? bright green leaf, dwarf-1, open Japonica
spikelet sterile
272 stl, v-7 XI, XI striped leaf, virescent-7 Japonica
283 nal narrow leaf Indica
284 Cl, gh, g I, X, IV clustered spikelets, gold hull, Indica
long glumes
285 bc brittle culm Indica
286 bn brittle culm, brittle node Indica
288 Prp, g ?, IV Pirurutong purple pericarp, long Indica
glumes
289 bc-2 brittle culm-2 Japonica
290 v-8, sd-1 VI+IX, III virescent-8, semi-dwarf-1 Indica
291 eui, sd-1 VI+IX, III elongated uppermost internode, Indica
semi-dwarf
292 aul, sd-1 ?, III auricleless, semi-dwarf-1 Indica
293 bc-4, sd-1 ?, III brittle culm-4, semi-dwarf-1 Indica
294 eg multi-glumes Indica
295 gh-1, sd-1 VI+IX, III gold hull-1, semi-dwarf-1 Indica
296 bc-1, sd-1 XI, III brittle culm-1, semi-dwarf-1 Indica
297 bc-3, sd-1 X, III brittle culm-3, semi-dwarf-1 Indica
298 pl II purple rice (recessive) Indica
299 spl-2, lg,sd-1X, II, III spotted leaf-2, liguleless, semi- Indica
dwarf-1
300 spl-3, sd-1 XI, III spotted leaf-3, semi-dwarf-1 Indica
301 spl-5, sd-1 IV, III spotted leaf-5, semi-dwarf-1 Indica
302 rfg, sd-1 IV, III rolled fine striped leaves, semi- Indica
dwarf-1
303 rfs, sp-5,sd-1IV, IV, III rolled fine striped leaf, spotted Indica
leaf-5, semi-dwarf-1
304 Pl II purple rice Indica
305 shp (?) sheathed panicle (Gamadi) Indica
306 eg III multiglumes Indica
307 la-1 VIII lazy growth Indica
330 mpi mimics Piricularia susceptibility Indica(?)
331 C, cl, wx, P, I, I, I, II, II, chromogen, clustered spikelets, Indica
Pl, prp, pj, III, (IV,V), XII, glutinous, colored apiculus,
Gh, An, Gl XII purple leaf, purple pericarp
purple junctura, gold hull,
awned, glabrous
332 Plm II purple leaf margin Indica
333 Sth, cr panicle enclosed by flag leaf Indica
sheath at maturity, crumbly
endosperm
334 Gm extremely long glumes Indica
335 C, P, Pr, lg, I, II, II, ?, III, chromogen, colored apiculus, Indica
pn, gh, An,Gl,VI, XII, XII, IV, purple hull, liguleless, purple
g, Pj, nl, v ?, IX, I node, gold hull, awned, glabrous,
long glumes, purple junctura,
neck leaf, virescent
336 Gl, Lg, la, XII, ?, VIII, VI, glabrous, liguleless, lazy, gold Indica
Gh/gh, Prb ? hull brown pericarp
337 Pf, Au, Pn,Gl,?, XII, III, XII purple furrowson hull, awned, Indica
purple node, glabrous
338 gf gold furrows on hall Indica
339 Rk round kernel Indica
=============================================================================
In addition to the above, 73 mutant lines whose genes are not identified yet
are maintained.