V. Literature on genic analysis

T. Kinoshita, Convener


1. Ahn, S. and S.D. Tanksley 1993. Comparative linkage maps of the rice and maize genomes. Proc. Natl. Acad. Sci. USA. 90: 7980-7984.

2. Bharaj, T.S., S.S. Bains, G.S. Sidhu and M.R. Gagneja 1991. Genetics of fertility restoration of 'Wild abortive' cytoplasmic male sterility in rice. Oryza sativa L. Euphytica 56: 199-203.

3. Claes, B., R. Dekeyser, R. Villarroel, M. Van den Bulcke, G. Bauw, M. V. Montagu and A. Caplan 1990. Characterization of a rice gene showing organ-specific expression in response to salt stress and drought. The Plant Cell 2: 19-27.

4. Eiguchi, M. and Y. Sano 1990. Genetic analysis of deep water tolerance introduced from Oryza rufipogon. Japan. J. Breed. 40 (Suppl. 2): 304- 305. (in Japanese)

5. Eiguchi, M., H-Y. Hirano, Y. Sano and H. Morishima 1993. Effects of water depth on internodal elongation and floral induction in a deepwater- tolerant rice line carrying the dW\3\ gene. Japan. J. Breed. 43: 135-139.

6. Fukuchl, A., A. Nakamura, H. Hirano, H. Hirochika and F. Kikuchi 1992a. Linkage analysis for a semidwarfing gene sd-1 on chromosome 1. RGN 9: 50-52.

7. Fukuchi, A., Y. Suzuki, H. Hirochika and F. Kikuchi 1992b. Linkage relations between the photoperiod sensitivity gene Se-1 and two other genes, Pi-zt and Pgi-2. RGN 9: 47-50.

8. Fukuta, Y., M. Yano and K. Fukui 1992. Linkage analysis of the restorer gene (Rf-1) in rice using restriction fragment length polymorphism markers. Japan. J. Breed. 42 (Suppl. 1): 164-165. (in Japanese)

9. Ghesquiere, A. and M. Causse 1992. Linkage study between molecular markers and genes controlling the reproductive barrier in interspecific backcross between O. sativa and O. longistaminata. RGN 9: 28-31.

10. Hirano, H., S. Komatsu, A. Nakamura, F. Kikuchi, H. Kajiwara, S. Tsunasawa and F. Sakiyama 1991. Structural homology between semi- dwarfism-related proteins and glutelin seed protein in rice (Oryza sativa L.). Theor. Appl. Genet. 83: 153-158.

11. Hirochika, H., A. Fukuchi and F. Kikuchi 1992. Retrotransposon families in rice. Mol. Gen. Genet. 233: 209-216.

12. Hu, J. and J.N. Rutger 1992. Pollen characteristics and genetics of induced and spontaneous genetic male-strile mutants in rice. Plant Breed. 109: 97-107.

13. Ichii, M., H. Sato, H. Hasegawa and O. Yatou 1992. Genetic analysis of a nitrate reductase deficient mutant in rice. Japan. J. Breed. 42 (Suppl. 1): 382-383. (in Japanese)

14. Ideta, O., A. Yoshimura, T. Matsumoto, H. Tsunematsu, T. Mikoda, H. Satoh and N. Iwata 1992a. Integration of conventional and RFLP linkage maps in rice. III. On the arrangement of some marker genes and RFLP markers. Japan. J. Breed. 42 (Suppl. 2): 126-127. (in Japanese)

15. Ideta, O., A. Yoshimura, T. Matsumoto, H. Tsunematsu and N. Iwata 1992b. Integration of conventional and RFLP linkage maps in rice. I. Chromosomes 1, 2, 3 and 4. RGN 9: 128-129.

16. Iida, S. and T. Nishio 1991. Genetic analysis of rice mutants with low allergenic protein. Japan. J. Breed. 41 (Suppl. 2): 352-353. (in Japanese)

17. Ikeda, R., R.E. Tabien and G.S. Khush 1991. Chromosomal location of Xa-21. RGN 8: 102-103.

18. Inukai, T., M. Maekawa and N. Shinbashi 1991. Gene analysis for spikelet sterility of F\1\ hybrid between cultivars Silewah and Hayakogane. RGN 8: 110-112.

19. Inukai, T., D.J. Mackill, J.M. Bonman, S. Sarkarung, R. Zeiglar, R. Nelson, I. Takamure and T. Kinoshita 1992a. Blast resistance genes Pi-2(t) and Pi-z may be allelic. RGN 9: 90-92.

20. Inukai, T., D.J. Mackill, J.M. Bonman, S. Sarkarung, R. Zeiglar, R. Nelson, I. Takamure and T. Kinoshita 1992b. A blast resistance gene Pi-3(t) in near-isogenic line C104PKT. RGN 9: 94-95.

21. Ise, K. 1991. Linkage analysis of some blast resistance gene in rice, Oryza sativa L. Japan. J. Breed. 42 (Suppl. 2): 388-389. (in Japanese)

22. Ise, K. 1993. A close linkage between the blast (B1) resistance gene Pi-ta2 and a marker on chromosome 12 in japonica rice. IRRI 18(2): 14.

23. Ishikawa, R. 1991a. Localization of gene Gdh-1 for glutamate dehydrogenase. RGN 8: 97-98.

24. Ishikawa, R. 1991b. Integration of isozyme genes on chromosome 12 into a linkage map. RGN 8: 100-101.

25. Kato, T. and K. Takeda 1992. An allele for long grain found in a mutant line of cultivar Gimbozu. RGN 9: 58-59.

26. Kaushik, R.P. and G.S. Khush 1991. Genetic analysis of endosperm mutants in rice Oryza sativa L. Theor. Appl. Genet. 83: 146-152.

27. Kawasaki, T., A. Yoshimura and N. Iwata 1991. Trial construction of chromosome map of rice using reciprocal translocations. Japan. J. Breed. 41 (Suppl. 1): 330-331. (in Japanese)

28. Khush, G.S., D.S. Multani, B.G. de los Reyes and D.S. Brar 1991. Chromosomal location of Mdh-3 and Pgd-2 loci in rice through monosomic alien addition line (MAAL) analysis. RGN 8: 106-109.

29. Kishimoto, N., E. Shimosaka, S. Matsuura and A. Saito 1992. A current RFLP linkage map of rice: Alignment of the molecular map with the classical map. RGN 9: 118-124.

30. Kishimoto, N., M.R. Foolad, E. Shimosaka, S. Matsuura and A. Saito 1993. Alignment of molecular and classical linkage maps of rice, Oryza sativa. Plant Cell Reports 12: 457-461.

31. Komori, T., Y. Okumoto, T. Tanisaka and H. Yamagata 1992. Studies on the utilization of a mutator induced in rice. 6. Identification of the location of the slender-glume gene. Japan. J. Breed. 42 (Suppl. 1): 150-151. (in Japanese)

32. Kumar, R.V. and S.S. Virmani 1992. Wide compatibility in rice (Oryza sativa L.). Euphytica 64: 71-80.

33. Kurata, N., Y. Harushima, Y. Nagamura, K. Yamamoto, J-Z, Wu, A. Antonio, N. Sue, A. Shomura, T. Toyama, Y. Miyamoto, T. Kirihara, A. Miyao, T. Sasaki, M. Yano and Y. Minobe 1992. Our current RFLP maps of rice. RGN 9: 130-132.

34. Lee, H.Y. and T. Kameya 1991. Selection and characterization of a rice mutant resistant to 5-methyltryptophan. Theor. Appl. Genet. 82: 405-408.

35. Lin, S.Y. and H. Ikehashi 1993. A gamete abortion locus detected by segregation distortion of isozyme locus Est-9 in wide crosses of rice (Oryza sativa L.). Euphytica 67: 35-40.

36. Lin, X., G. Yu, D. Zhang, Y. Xie and Y. Chen 1991. Chromosomal location of genes for bacterial blight resistance found in a Yunnan variety, Donguno. RGN 8: 124.

37. Liu, A., Q. Zhang and H. Li 1992. Location of a gene for wide- compatibility in the RFLP linkage map. RGN 9: 134-136.

38. Mackill, D.J., S.R.M. Pinson and J.N. Rutger 1992. Frizzy panicle, an EMS-induced mutant in the Japonica cultivar M-201. RGN 9: 100-102.

39. Mackill, D.J. and Bonman, J. M. 1992. Inheritance of blast resistance in near-isogenic lines of rice. Phydtopathology 82: 746-749.

40. Mackill, D.J., M.A. Salam, Z.Y. Wang and S.D. Tanksley 1993. A major photoperiod-sensitivity gene tagged with RFLP and isozyme markers in rice. Theor. Appl. Genet. 85: 536-540.

41. Maekawa, M. and Inukai 1992. Genes linked with d-2 in rice. Japan. J. Breed. 42 (Suppl. 2): 212-213. (in Japanese)

42. Maekawa, M., T. Inukai and N. Shinbashi 1990. A new gene for leaf stripe (st-6) found in linkage group 3. RGN 7: 108-109.

43. Maruyama, K., H. Araki and H. Kato 1991. Thermosensitive genetic male sterility induced by irradiation. Rice Genetics II. IRRI 227-235.

44. Matsuura, S., M. Yano and A. Saito 1991a. Linkage analysis of two ribosomal DNA genes in rice. Japan. J. Breed. 41 (Suppl. 1): 320-321. (in Japanese)

45. Matsuura, S., M. Yano and A. Saito 1991b. Location of two rDNA genes by linkage analysis in rice. RGN 8: 136-139.

46. McCouch, S.R., G. Kochert, Z.H. Yu, Z.Y. Wang, G.S. Khush, W. R. Coffman and S.D. Tanksley 1988. Molecular mapping of rice chromosome. Theor. Appl. Genet. 76: 815-829.

47. McCouch, S.R., M.L. Abenes, R. Angeles, G.S. Khush and S.D. Tanksley 1991. Molecular tagging of a recessive gene, xa-5, for resistance to bacterial blight of rice. RGN 8: 143-145.

48. Mir, G.N. and G.S. Khush 1991. Genetics of resistance to bacterial blight in rice (Oryza sativa L.). Indian J. Genet. 51(1): 72-78.

49. Nagamine, T. 1991. Genic control of tolerance to chilling injury at seedling stage in rice, Oryza sativa L. Japan. J. Breed. 41(1): 35-40.

50. Nakamura, I. 1992. A rice mutant showing accelerated internode overgrowth. RGN 9: 61-62.

51. Ogi, Y., H. Kato, K. Maruyama, A. Saito and F. Kikuchi 1993. Identification of RFLP markers closely linked to the semidwarfing gene at the sd-1 locus in rice. Japan. J. Breed. 43: 141-146.

52. Ohshima, I., F. Kikuchi, Y. Watanabe and C. Asahi 1993. Genetic analysis of heading time in a cross between two Indica varieties with inhibitor genes for photoperiod sensitivity. Japan. J. Breed. 43: 101-106. (in Japanese with English summary)

53. Ohshima, I., K. Odaka, Y. Morooka, K. Nomura, F. Kikuchi, K. Maruyama, H. Kato, N. Kishimoto and A. Saito 1993b. Linkage analysis of a photoperiod-sensitive gene locus (Se-1) with RFLP markers in rice. Japan. J. Breed. 43 (Suppl. 1): 147. (in Japanese)

54. Okumoto, Y., A. Yoshimura, T. Tanisaka and H. Yamagata 1992. Analysis of a rice variety Taichung 65 and its isogenic early-heading lines for late-heading genes E\1\, E\2\ and E\3\. Japan. J. Breed. 42: 415-429. (in Japanese with English summary)

55. Prasad, K. and R. Seetharaman 1991. Inheritance of grain size and its interrelationship in rice. Indian J. Genet. 51(3): 352-356.

56. Ratho, S.N. and S.B. Pradhan 1992. Cytoplasmically controlled cold tolerance in a cytoplasmic-genetic male sterile line of rice. Euphytica 58: 241-244.

57. Rice Genome Research Program (RGP). 1993. Rice Genome 2(1), pp. 23. NIAR/STAFF.

58. Ronald, P.C. and S.D. Tanksley 1991. Genetic and physical mapping of the bacterial blight resistance gene Xa-21. RGN 8: 142-143.

59. Ronald, P.C., B. Albano, R. Tabien, L. Abenes, K. Wu, S. McCouch and S. D. Tanksley 1992. Genetic and physical analysis of the rice bacterial blight disease resistance locus Xa21. Mol. Gen. Genet. 236: 113-120.

60. Saeda, T. and H. Kitano 1992. Genetic analysis of a short culm-mutant showing the dm-type internode distribution pattern. Japan. J. Breed. 42 (Suppl. 2): 214-215. (in Japanese)

61. Saito, A. M., Yano, N. Kishimoto, M, Nakagahra, A. Yoshimura, K. Saito, S. Kuhara, Y. Ukal, M. Kawase, T. Nagamine, S. Yoshimura, O. Ideta, R. Ohsawa, Y. Haynao, N. Iwata and M. Sugiura. 1991. Linkage map of restriction fragment length polymorphism loci in rice. Japan J. Breed. 41: 665-670.

62. Sanchez, A.C. and G.S. Khush 1991. Location of chl-7 on linkage group 6. RGN 8: 104-105.

63. Sanchez, A.C. and G.S. Khush 1992. Seven new genes for zebra character in rice. RGN 9: 68-71.

64. Sano, Y. 1991. A gene for low crossability found in the common wild rice. RGN 8: 115-116.

65. Sano, Y. 1992a. Genetic comparisons of chromosome 6 between wild and cultivated rice. Japan. J. Breed. 42: 561-572.

66. Sano, Y. 1992b. Chromosomal location of low crossability gene (Lcr\1\(t)) in Oryza rufipogon. Japan. J. Breed. 42 (Suppl. 1): 160-161. (in Japanese)

67. Sano, Y. and M. Eiguchi 1991. A nuclear gene inducing fertility restoration in cytoplasmic male-sterile rice. RGN 8: 113-115.

68. Sano, Y., M. Eiguchi and H.Y. Hirano 1992. Gametic eliminations found in the Indica-Japonica hybrid of rice. Japan. J. Breed. 42 (Suppl. 2): 454-455.

69. Sato, S., K. Ogata and C. Shinjyo 1992. Thermosensitive action of an earliness gene Ef-x in rice, Oryza sativa L. Japan. J. Genet. 67: 473-482.

70. Satoh, H., H. Suehisa, M. Ogawa and A. Yoshimura 1991. Studies on rice glutelin, 3. Genetic analysis of mutants for glutelin acidic subunits in cultivated rice, Oryza sativa L. Japan. J. Breed. 41 (Suppl. 2): 436-437. (in Japanese)

71. Satoh, M., M. Miyamoto, I. Andoh, A, Saito and S. Kawasaki 1992. RFLP mapping of resistance genes against rice blast disease 1. Pi-b and Pi-zt. Japan. J. Breed. 42 (Suppl. 2): 132-133. (in Japanese)

72. Satoh, H., T. Itoh, M. Y. Son and T. Kumamaru 1993. Chromosomal location of a spontaneous mutant gene for 57 kDa polypeptides in rice. Japan. J. Breed. (Suppl. 1): 139. (in Japanese)

73. Shao, Y. and X-H. Tang 1992. Analysis of restorer genes for photoperiod sensitive male-sterile rice. RGN 9: 52-54.

74. Takamure, I. and T. Kinoshita 1991. Linkage analysis in chromosomes 3 and 6. RGN 8: 98-100.

75. Takamure, I. and T. Kinoshita 1992. Modification of glume characters due to genic interactions and environmental conditions. RGN 9: 85-88.

76. Takeda, K. and T. Kato 1992. Duplicate genes controlling long grain of a rice variety IRAT13. RGN 9: 59-60.

77. Tanaka, H., A. Nakamura, S. Oba and F. Kikuchi 1992. Genetic analysis for semidwarfism of induced mutant in rice (Oryza sativa L.). Japan. J. Breed. 42 (Suppl. 1): 576-577. (in Japanese)

78. Tang, S. X., G.S. Khush, and B.O. Juliano 1991. Genetics of gel consistency in rice (Oryza sativa L.). Jour. Genet. 70(2): 69-78.

79. Tanisaka, T., M. Tomita and H. Yamagata 1990. Gene analysis for the semidwarfism of two mutant strains Hokuriku 100 and Kanto 79, induced from a rice variety Koshihikari. (Studies on the utility of artificial mutants in plant breeding XVIII). Japan. J. Breed. 40: 103-117. (in Japanese with English summary)

80. Tanksley, S., M. Causse, T. Fulton, N. Ahn, Z. Wang, K. Wu, J. Xiao, Z. Yu, G. Second and S. McCouch 1992a. A high density molecular map of the rice genome. RGN 9: 111-115.

81. Tanksley, S.D., T.M. Fulton and S.R. McCouch 1992b. Linkage map of rice (Oryza sativa) (2N=24). In Genetic Maps, Locus Maps of Complex Genomes, Book 6. S.J. O'Brien ed. p. 6.61-6.79, Cold Spring Harbour Lab. Press.

82. Taura, S., T. Ogawa, A. Yoshimura, R. Ikeda and N. Iwata 1992. Identification of a recessive resistance gene to rice bacterial blight of mutant line XM6, Oryza sativa L. Japan. J. Breed. 42: 7-13.

83. Tomita, M., T. Tanisaka and H. Yamagata 1993. Gametic lethal system composed of a semidwarfing gene d-60 and a gametic lethal gene gal in rice. Japan J. Breed. 43. (in press)

84. Tsai, K.H. 1991a. Tight linkage of gene sd-7(t) and d\1\ found in a cross of Taichung 65 isogenic lines. RGN 8: 104-105.

85. Tsai, K.H. 1991b. Chromosomal location of gene sd-1 examined with isogenic translocation lines of Taichung 65. RGN 8: 109-110.

86. Tsai, K.H. 1991c. Multiple alleles detected at locus sd-1. RGN 8: 112-113.

87. Wan, J., S. Yanagihara, H. Sato and H. Ikehashi 1993. A new locus for hybrid sterility in remote crosses of cultivated rice (Oryza sativa L.). III. S-9(t). Japan. J. Breed. 43 (Suppl. 1): 146. (in Japanese)

88. Wang, G-L., Mackill, D.J., Bonman, J.M., McCouch, S.R., Champoux, M. and Nelson, R.J. 1994. RFLP mapping of genes conferring complete and partial resistance to blast in a durably resistant rice cultivar. Genetics (in press)

89. Xiao, J., T. Fulton, S. McCouch, S. Tanksley, N. Kishimoto, R. Ohsawa, Y. Ukai and A. Saito 1992. Progress in integration of the molecular maps of rice. RGN 9: 124-128.

90. Yanagihara, S., H. Kato and H. Ikehashi 1992a. A new locus for multiple alleles causing hybrid sterility between an Aus variety and Javanica varieties in rice (Oryza sativa L.). Japan. J. Breed. 42: 793-801.

91. Yanagihara, S., J. Wan, H. Kato and H. Ikehashi 1992b. A new locus for hybrid sterility in remote crosses of cultivated rice (Oryza sativa L.) II. Japan. J. Breed. 42 (Suppl. 2): 216-217. (in Japanese)

92. Yang, R.C., K. Liang, N. Wang and S. Chen 1992. A recessive gene in Indica rice 5460S for thermosensitive enic male sterility. RGN 9: 56-57.

93. Yano, M., E. Simosaka, A. Saito and M. Nakagahra 1991a. Linkage analysis on gene for scent in indica rice variety, Surjamkhi, using a restriction fragment length polymorphism markers. Japan. J. Breed. 41 (Suppl. 1): 338-339. (in Japanese)

94. Yano, M., R. Zamorski, A. Saito and N. Shibuya 1991b. Linkage analysis of the gene controlling glucomannan content in endosperm cell wall of rice. Japan. J. Breed. (Suppl. 2): 498-499. (in Japanese)

95. Yokoo, M. and K. Okuno 1993. Genetic analysis of earliness mutations induced in the rice cultivar Norin 8. Japan. J. Breed. 43: 1-11.

96. Yoshimura, A., O. Ideta, T. Matsumoto, T. Tsunematsu and N. Iwata 1992a. Integration of conventional and RFLP linkage maps in rice. I. On chromosomes 1, 2, 3 and 4. Japan. J. Breed. 42 (Suppl. 1): 168-169. (in Japanese)

97. Yoshimura, A., O. Ideta, S. Takebayashi, T. Matsumoto, S. Yoshimura, T. Ogawa and N. Iwata 1992b. Integration of RFLP and conventional maps in rice. II. The location of gl-1 and xa-5. Japan. J. Breed. 42 (Suppl. 2): 124-125. (in Japanese)

98. Yoshimura, S., R. Nelson, A. Yoshimura, T.W. Mew and N. Iwata 1992c. RFLP mapping of the bacterial blight resistance genes Xa-3 and Xa-4. RGN 9: 136-138.

99. Yoshimura, S., A. Yoshimura and N. Iwata 1992d. Tagging Xa-1, the bacterial blight resistance gene in rice, by using RAPD markers. Japan. J. Breed. 42 (Suppl. 2): 204-205.

100. Yoshimura, S., A. Yoshimura, A. Saito, N. Kishimoto, M. Kawase, M. Yano, M. Nakagahra, T. Ogawa and N. Iwata 1992e. RFLP analysis of introgressed chromosomal segments in three near-isogenic lines of rice for bacterial blight resistance genes, Xa-1, Xa-3 and Xa-4. Jpn. J. Genet. 67: 29-37.

101. Yoshimura, S., A. Yoshimura, R.J. Nelson, S.R. McCouch, T.W. Mew and N. Iwata 1993. Mapping and combining of bacterial blight risistance genes in rice using molecular markers. Japan. J. Breed. 43 (Suppl. 1): 161. (in Japanese)

102. Yu, D.J. Mackill, J.M. Bonman and S.D. Tanksley 1991. Tagging genes for blast resistance in rice via linkage to RFLP markers. Theor. Appl. Genet. 81: 471-476.

103. Yu, Z.H., T. Kinoshita, S. Sato and S.D. Tanksley 1992. Morphological and RFLP markers are associated in rice. RGN 9: 116-118.