Microsatellite Markers

Below are text tables that we have constructed for easy downloading of the rice microsatellite data that's available in Gramene.

All RM Primers - Displays all RM (Rice Microsatellite) markers and their primers

All RM Marker Polymorphisms By Size - Displays all RM (Rice Microsatellite) markers sorted by minimum band size among the cultivars tested.

All RM Weights for 2 Cultivars - Displays all RM (Rice Microsatellite) markers and their molecular weights for 2 cultivars. The default displays marker weights for IR64 and Azucena. You can modify the table to display your two favorite cultivars.

Microsatellite Markers - Displays all RM (Rice Microsatellite) markers and associated data. (Please be patient while loading; this is a huge table)

Simple Sequence Repeat Identification Tool - SSRIT, is a Perl script which identifies perfect simple sequence repeats (SSRs) in any given sequence(s)

International Rice Microsatellite Initiative - IRMI, is a consortium of public and private research groups that are working together to generate new microsatellite markers for rice based on publicly available sequence.

SSR Fluoresent Panel Info This table provides information about SSR panels presented in a paper by McCouch et. al. to appear in Crop Science. (Available Soon)