| Locus | Chrom. | Size range (bp)* | Dye label | Allele no.* | P.I.C.* | Motif | Ave. Tm (GC)** | Ave. Std. Dev.* | Ave. Std. Dev. w/T4* | Forward primer sequence | Reverse primer sequence | Annealing temp. (GC) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RM312 | 1 | 96-103 | FAM | 4 | 0.68 | (attt)4(gt)9 | 61.2 | 0.23 | gtatgcatatttgataagag | ccgaacgccaagaagcgcgacc | 55 | |
| RM315 | 1 | 132-141 | FAM | 3 | 0.57 | (at)4(gt)10 | 62.6 | 0.13 | gaggtacttcctccgtttcac | gaggaacaaccaccgaaacac | 55 | |
| RM5 | 1 | 108-133 | TET | 6 | 0.77 | (ga)14 | 60.2 | 0.26 | tgcaacttctagctgctcga | gcatccgatcttgatggg | 55 | |
| RM283 | 1 | 150-160 | HEX | 3 | 0.61 | (ga)18 | 62.6 | 0.17 | gtctacatgtacccttgttggg | cggcatgagagtctgtgatg | 55 | |
| RM 323 | 1 | 244-250 | HEX | 3 | 0.47 | (cat)5 | 60.4 | 0.50 | caacgagcaaatcaggtcag | caacgagcaaaacaggacag | 55 | |
| RM246 | 1 | 96-119 | HEX | 6 | 0.81 | (ct)20 | 62.3 | 0.33 | gagctccatcagccattcag | ctgagtgctgctgcgact | 55 | |
| RM 14 | 1 | 173-192 | HEX | 4 | 0.73 | (ga)18 | 60.4 | 0.12 | ccgaggagaggagttcgac | gtgccaatttcctcgaaaaa | 55 |
| Locus | Chrom. | Size range (bp)* | Dye label | Allele no.* | P.I.C.* | Motif | Ave. Tm (GC)** | Ave. Std. Dev.* | Ave. Std. Dev. w/T4* | Forward primer sequence | Reverse primer sequence | Annealing temp. (GC) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RM462 | 1 | 245-252 | FAM | 3 | 0.38 | (ga)12 | 0.46 | 0.13 | acggcccatataaaagcctc | aagaaggcggagaagcacag | 55 | |
| RM259 | 1 | 155-176 | FAM | 7 | 0.77 | (ct)17 | 60.2 | 0.16 | tggagtttgagaggaggg | cttgttgcatggtgccatgt | 55 | |
| RM486 | 1 | 99-114 | FAM | 5 | 0.75 | (ct)14 | 63.5 | 0.25 | cccccctctctctctctctc | aagccacaacaacagcaagc | 55 | |
| RM428 | 1 | 263-290 | TET | 6 | 0.79 | (ag)15 | 61.4 | 0.56 | 0.12 | aacagatggcatcgtcttcc | cgcagcaaccacaacagaag | 55 |
| RM449 | 1 | 116-140 | TET | 6 | 0.78 | (ag)12 | 62.5 | 0.15 | ttgggaggtgttgataaggc | accaccagcgacacacacac | 55 | |
| RM104 | 1 | 222-244 | TET | 3 | 0.615 | (ga)9 | 66.2 | 0.44 | ggaagaggagagaaagatgtgtgtcg | ggaagaggagagaaagaagagagacg | 61 | |
| RM403 | 1 | 243-248 | HEX | 2 | 0.5 | (ga)8 | 0.54 | 0.29 | gctgtgcatgcaagttcatg | aaggaccacaagaacaaggc | 55 | |
| RM488 | 1 | 157-193 | HEX | 8 | 0.88 | (ga)17 | 61.4 | 0.23 | cagctagggttttgaggctg | tagcaacaaccagcgtatgc | 55 | |
| RM212 | 1 | 112-134 | HEX | 5 | 0.72 | (ct)24 | 59.7 | 0.13 | ccactttcagctactaccag | cacccatttgtctctcattatg | 55 |
| Locus | Chrom. | Size range (bp)* | Dye label | Allele no.* | P.I.C.* | Motif | Ave. Tm (GC)** | Ave. Std. Dev.* | Ave. Std. Dev. w/T4* | Forward primer sequence | Reverse primer sequence | Annealing temp. (GC) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RM106 | 2 | 288-296 | FAM | 2 | 0.5 | (gaa)5 | 68.3 | 0.29 | cgtcttcatcatcgtcgccccg | cgacaacaacaacgacgccccg | 55 | |
| RM221 | 2 | 185-195 | FAM | 3 | 0.59 | (tc)4t3c3(tc)(ct)2 | 60.2 | 0.26 | acatgtcagcatgccacatc | tgcaagaatctgacccgg | 55 | |
| RM109 | 2 | 86-101 | TET | 6 | 0.66 | (ag)16 | 0.29 | gccgccggagagggagagagag | gccgccggagagggagagagag | 55 | ||
| RM341 | 2 | 135-174 | TET | 4 | 0.66 | (ctt)20 | 60.4 | 0.41 | caagaaacctcaatccgagc | caagaaaccacaaaccgagc | 55 | |
| RM498 | 2 | 295-310 | HEX | 4 | 0.6 | (ca)10 | 61.4 | ? | aatctgggcctgctcttttc | tcctagggtgaagaaagggg | 55 | |
| RM174 | 2 | 206-224 | HEX | 6 | 0.63 | (agg)7(ga)10 | 68.3 | 0.17 | agcgacgccaagacaagtcggg | agcgacgccaagacaagacggg | 67 | |
| RM27 | 2 | 155-165 | HEX | 3 | 0.64 | (ga)7 | 59.7 | 0.62 | 0.28 | ttttccttctcacccacttca | tctttgacaagaggaaagaggc | 55 |
| RM112 | 2 | 122-128 | HEX | 3 | 0.47 | (gaa)5 | 70.1 | 0.35 | 0.10 | gggaggagaggcaagcggagag | gggaggagaggcaagcggagag | 55 |
| Locus | Chrom. | Size range (bp)* | Dye label | Allele no.* | P.I.C.* | Motif | Ave. Tm (GC)** | Ave. Std. Dev.* | Ave. Std. Dev. w/T4* | Forward primer sequence | Reverse primer sequence | Annealing temp. (GC) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RM482 | 2 | 184-197 | FAM | 5 | 0.73 | (at)9 | 60.4 | 0.09 | tctgaaagcctgactcatcg | gacaaaagcagagcccaaac | 55 | |
| RM438 | 2 | 117-141 | FAM | 4 | 0.65 | (tc)13 | 64.5 | 0.34 | cttatccccccgtctctctc | cacacagccaccgaaccaac | 55 | |
| RM250 | 2 | 154-176 | TET | 4 | 0.6 | (ct)17 | 61.4 | 0.70 | 0.16 | ggttcaaaccaagctgatca | gatgaaggccttccacgcag | 55 |
| RM423 | 2 | 270-294 | HEX | 3 | 0.7 | (ttc)9 | 61.43 | agcacccatgccttatgttg | ccaaaaacagaagcccaccc | 55 | ||
| RM530 | 2 | 160-174 | HEX | 4 | 0.63 | (ga)23 | 62.5 | 0.16 | gcactgaccacgactgtttg | accgtaacccggatctatcc | 55 | |
| RM475 | 2 | 186-246 | HEX | 6 | 0.75 | (tatc)8 | 61.4 | 0.56 | 0.18 | cctcacgattttcctccaac | acggagggaaaagacagagc | 55 |
| Locus | Chrom. | Size range (bp)* | Dye label | Allele no.* | P.I.C.* | Motif | Ave. Tm (GC)** | Ave. Std. Dev.* | Ave. Std. Dev. w/T4* | Forward primer sequence | Reverse primer sequence | Annealing temp. (GC) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RM156 | 3 | 149-161 | FAM | 2 | 0.5 | (cgg)8 | 72 | 0.18 | gccgcaccctcactccctcctc | gccgcacccacacacccaccac | 55 | |
| RM135 | 3 | 117-131 | FAM | 3 | 0.62 | (cgg)10 | 72 | 0.47 | 0.35 | ctctgtctcctcccccgcgtcg | cacagacaccacccccgcgacg | 61 |
| RM 293 | 3 | 198-206 | FAM | 6 | 0.7 | (gt)20 | 62.5 | 0.14 | tcgttgggaggtatggtacc | acgaagggaggaaaggaacc | 55 | |
| RM517 | 3 | 255-285 | TET | 5 | 0.76 | (ct)15 | 61.4 | ? | 0.13 | ggcttactggcttcgatttg | cgtctcctttggttagtgcc | 55 |
| RM 7 | 3 | 168-185 | TET | 5 | 0.75 | (ga)19 | 59.3 | 0.16 | ttcgccatgaagtctctcg | cctcccatcatttcgttgtt | 55 | |
| RM 55 | 3 | 219-241 | TET | 4 | 0.64 | (ga)17 | 61.3 | 0.23 | ccgtcgccgtagtagagaag | tcccggttattttaaggcg | 55 | |
| RM 85 | 3 | 82-108 | TET | 4 | 0.59 | (tgg)5(tct)12 | 58.7 | 0.30 | ccaaagatgaaacctggattg | ccaaagaagaaaccaggaaag | 55 | |
| RM489 | 3 | 237-275 | HEX | 5 | 0.69 | (ata)8 | 61.4 | 0.24 | acttgagacgatcggacacc | tcacccatggatgttgtcag | 55 | |
| RM132 | 3 | 80-85 | HEX | 2 | 0.5 | (cgg)8 | 66.4 | 0.28 | atcttgttgtttcggcggcggc | aacaagaagaaacggcggcggc | 67 | |
| RM 231 | 3 | 168-195 | HEX | 5 | 0.7 | (ct)16 | 58.5 | 0.15 | ccagattatttcctgaggtc | cacttgcatagttctgcattg | 55 | |
| RM 282 | 3 | 129-140 | HEX | 3 | 0.62 | (ga)15 | 62.4 | 0.09 | ctgtgtcgaaaggctgcac | cagtcctgtgttgcagcaag | 55 |
| Locus | Chrom. | Size range (bp)* | Dye label | Allele no.* | P.I.C.* | Motif | Ave. Tm (GC)** | Ave. Std. Dev.* | Ave. Std. Dev. w/T4* | Forward primer sequence | Reverse primer sequence | Annealing temp. (GC) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RM232 | 3 | 139-169 | FAM | 6 | 0.78 | (ct)24 | 61.4 | 0.16 | ccggtatccttcgatattgc | ccgacttttcctcctgacg | 55 | |
| RM347 | 3 | 214-300 | FAM | 4 | 0.7 | (ggc)5(at)7 | 0.21 | cacctcaaacttttaaccgcac | caccacaaacaaaaaaccgcac | 55 | ||
| RM422 | 3 | 345-387 | FAM | 9 | 0.85 | (ag)30 | 60.2 | 0.36 | ttcaacctgcatccgctc | ccaaccaaaacagcaacagc | 55 | |
| RM514 | 3 | 247-272 | TET | 6 | 0.79 | (ac)12 | 59.4 | 0.24 | agattgatctcccattcccc | cacgagcatattactagtgg | 55 | |
| RM338 | 3 | 180-183 | TET | 2 | 0.26 | (ctt)6 | cacaggagcaggagaagagc | cacaggagcaggagaagagc | 55 | |||
| RM416 | 3 | 110-115 | TET | 2 | 0.43 | (ga)9 | 61.4 | 0.19 | gggagttagggttttggagc | accagaaacacacagcaacg | 55 | |
| RM251 | 3 | 113-152 | HEX | 7 | 0.78 | (ct)29 | 59.1 | 0.21 | gaatggcaatggcgctag | atgcggttcaagattcgatc | 55 | |
| RM16 | 3 | 166-229 | HEX | 6 | 0.77 | (tcg)5(ga)16 | 61.3 | 0.15 | cgctagggcagcatctaaaa | aacacagcaggtacgcgc | 55 | |
| RM468 | 3 | 261-272 | HEX | 3 | 0.56 | (tat)8 | 61.4 | 0.16 | cccttccttgttgtggctac | agaaaacagagagccaaccc | 55 |
| Locus | Chrom. | Size range (bp)* | Dye label | Allele no.* | P.I.C.* | Motif | Ave. Tm (GC)** | Ave. Std. Dev.* | Ave. Std. Dev. w/T4* | Forward primer sequence | Reverse primer sequence | Annealing temp. (GC) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RM348 | 4 | 131-143 | TET | 2 | 0.47 | (cag)7 | 60.4 | 0.29 | ccgctactaatagcagagag | ccgcaacaaaaagcagagag | 55 | |
| RM119 | 4 | 166-174 | FAM | 3 | 0.56 | (gtc)6 | 70.1 | 0.15 | catccccctgctgctgctgctg | caacccccagcagcagcagcag | 67 | |
| RM273 | 4 | 198-213 | FAM | 3 | 0.34 | (ga)11 | 62.5 | 0.14 | gaagccgtcgtgaagttacc | gtttcctacctgatcgcgac | 55 | |
| RM 124 | 4 | 267-276 | FAM | 3 | 0.65 | (tc)10 | 68.3 | 0.14 | atcgtctgcgttgcggctgctg | aacgacagcgaagcggcagcag | 55 | |
| RM 335 | 4 | 104-156 | TET | 8 | 0.84 | (ctt)25 | 62.6 | 0.24 | gtacacacccacatcgagaag | gaacacacccacaacgagaag | 55 | |
| RM142 | 4 | 235-241 | TET | 2 | 0.47 | (cgg)7 | 68.3 | 0.36 | ctcgctatcgccatcgccatcg | cacgcaaacgccaacgccaacg | 67 | |
| RM261 | 4 | 123-128 | HEX | 5 | 0.7 | c9(ct)8 | 0.54 | 0.19 | ctacttctccccttgtgtcg | tgtaccatcgccaaatctcc | 55 | |
| RM185 | 4 | 189-194 | HEX | 2 | 0.5 | (agg)9 | 66.3 | 0.27 | agttgttgggagggagaaaggcc | agaagaagggagggagaaaggcc | 55 | |
| RM317 | 4 | 142-167 | HEX | 3 | 0.6 | (gc)4(gt)18 | 62.6 | 0.36 | catacttaccagttcaccgcc | caaacaaaccagaacaccgcc | 55 |
| Locus | Chrom. | Size range (bp)* | Dye label | Allele no.* | P.I.C.* | Motif | Ave. Tm (GC)** | Ave. Std. Dev.* | Ave. Std. Dev. w/T4* | Forward primer sequence | Reverse primer sequence | Annealing temp. (GC) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RM13 | 5 | 127-146 | FAM | 6 | 0.72 | (ga)6-(ga)16 | 60.2 | 0.25 | tccaacatggcaagagagag | ggtggcattcgattccag | 55 | |
| RM164 | 5 | 249-305 | FAM | 8 | 0.87 | (gt)16tt(gt)4 | 64.6 | 0.20 | tcttgcccgtcactgcagatatcc | gcagccctaatgctacaattcttc | 55 | |
| RM161 | 5 | 163-188 | FAM | 5 | 0.64 | (ag)20 | 68.3 | 0.38 | tgcagatgagaagcggcgcctc | agcagaagagaagcggcgccac | 61 | |
| RM188 | 5 | 206-215 | FAM | 4 | 0.26 | (ca)8 | 70.1 | 0.38 | tccgcctctcctctcgcttccc | accgccacaccacacgcaaccc | 55 | |
| RM153 | 5 | 194-206 | TET | 3 | 0.64 | (gaa)9 | 0.14 | gcctcgagcatcatcatcag | gccacgagcaacaacaacag | 55 | ||
| RM178 | 5 | 115-122 | TET | 4 | 0.61 | (ga)5(ag)8 | 66.4 | 0.40 | 0.31 | tcgcgtgaaagataagcggcgc | acgcgagaaagaaaagcggcgc | 67 |
| RM169 | 5 | 164-194 | HEX | 5 | 0.71 | (ga)12 | 70.1 | tggctggctccgtgggtagctg | aggcaggcaccgagggaagcag | 67 | ||
| RM87 | 5 | 147-160 | HEX | 4 | 0.73 | (ctt)3t(ctt)11 | 62.5 | 0.29 | cctctccgatacaccgtatg | ccacaccgaaacaccgaaag | 55 |
| Locus | Chrom. | Size range (bp)* | Dye label | Allele no.* | P.I.C.* | Motif | Ave. Tm (GC)** | Ave. Std. Dev.* | Ave. Std. Dev. w/T4* | Forward primer sequence | Reverse primer sequence | Annealing temp. (GC) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RM437 | 5 | 264-282 | FAM | 4 | 0.52 | (ag)13 | 0.14 | acaccaaccagatcagggag | agcacgacaaaggagagaac | 55 | ||
| RM146 | 5 | 330-348 | FAM | 4 | 0.46 | (ct)11-(ct)7 | 67.5 | 0.10 | ctattattccctaacccccataccctcc | caaaaaaacccaaacccccaaacccacc | 55 | |
| RM459 | 5 | 55-77 | TET | 4 | 0.73 | (catc)6 | 61.2 | 0.26 | ctgcaatgctgcatgacc | cacaaacacagcagcaccag | 55 | |
| RM334 | 5 | 144-200 | TET | 7 | 0.83 | (ctt)20 | 62.5 | 0.26 | 0.21 | gttcagtgttcagtgccacc | gaacagagaacagagccacc | 55 |
| RM413 | 5 | 68-109 | HEX | 6 | 0.76 | (ag)11 | 60.4 | 0.11 | ggcgattcttggatgaagag | accccaccaaacaagacaac | 55 | |
| RM421 | 5 | 237-249 | HEX | 2 | 0.52 | (agat)6 | 60.4 | 0.21 | agctcaggtgaaacatccac | aaccagaaaccaaagacccc | 55 |
| Locus | Chrom. | Size range (bp)* | Dye label | Allele no.* | P.I.C.* | Motif | Ave. Tm (GC)** | Ave. Std. Dev.* | Ave. Std. Dev. w/T4* | Forward primer sequence | Reverse primer sequence | Annealing temp. (GC) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RM3 | 6 | 118-148 | FAM | 4 | 0.72 | (ga)2gg(ga)25 | 61.6 | ggtaaatggacaatcctatggc | cctccactgctccacatctt | 55 | ||
| RM133 | 6 | 229-237 | TET | 3 | 0.56 | (ct)8 | 62.7 | 0.18 | ttggattgttttgctggctcgc | aaggaaagaaaagcaggcacgc | 61 | |
| RM 50 | 6 | 179-205 | TET | 6 | 0.76 | (ctat)4(ct)15 | 61.2 | 0.28 | actgtaccggtcgaagacg | aaattccacgtcagcctcc | 55 | |
| RM103 | 6 | 327-338 | TET | 4 | 0.7 | (gaa)5 | 68.3 | 0.51 | 0.15 | cttccaattcaggccggctggc | caaccaaaacaggccggcaggc | 55 |
| RM225 | 6 | 123-145 | HEX | 5 | 0.77 | (ct)18 | 0.47 | tgcccatatggtctggatg | gaaagtggatcaggaaggc | 55 | ||
| RM136 | 6 | 98-104 | HEX | 3 | 0.62 | (agg)7 | 69.7 | 0.44 | gagagctcagctgctgcctctagc | gagagcacagcagcagccacaagc | 55 | |
| RM162 | 6 | 212-240 | HEX | 4 | 0.54 | (ac)20 | 68.3 | 0.13 | gccagcaaaaccagggatccgg | gccagcaaaaccagggaaccgg | 61 |
| Locus | Chrom. | Size range (bp)* | Dye label | Allele no.* | P.I.C.* | Motif | Ave. Tm (GC)** | Ave. Std. Dev.* | Ave. Std. Dev. w/T4* | Forward primer sequence | Reverse primer sequence | Annealing temp. (GC) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RM340 | 6 | 116-191 | FAM | 4 | 0.67 | (ctt)8t3(ctt)14 | 60.8 | 0.41 | ggtaaatggacaatcctatggc | ggaaaaaggacaaaccaaaggc | 55 | |
| RM454 | 6 | 270-294 | TET | 4 | 0.67 | (gct)8 | 62.5 | 0.25 | ctcaagcttagctgctgctg | gagaacagagcaccaaagcg | 55 | |
| RM510 | 6 | 109-120 | TET | 4 | 0.64 | (ga)15 | 61.4 | 0.35 | aaccggattagtttctcgcc | tgaggacgacgagcagattc | 55 | |
| RM400 | 6 | 193-323 | HEX | 8 | 0.83 | (ata)63 | 62.5 | 0.34 | acaccaggctacccaaactc | cggagagaacagacaagagg | 55 | |
| RM435 | 6 | 163-170 | HEX | 3 | 0.47 | (atg)7 | 61.4 | 0.24 | 0.04 | attacgtgcatgtctggctg | cgaaccagaccaagcaacag | 55 |
| RM190 | 6 | 104-131 | HEX | 7 | 0.8 | (ct)11 | 56.3 | 0.23 | ctttgtctatctcaagacac | caaagacaaacacaagacac | 55 |
| Locus | Chrom. | Size range (bp)* | Dye label | Allele no.* | P.I.C.* | Motif | Ave. Tm (GC)** | Ave. Std. Dev.* | Ave. Std. Dev. w/T4* | Forward primer sequence | Reverse primer sequence | Annealing temp. (GC) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RM295 | 7 | 177-192 | FAM | 5 | 0.64 | (ga)2a(ga)3g2(ga)9 | 0.45 | cgagacgagcatcggataag | gatctggtggaggggagg | 55 | ||
| RM125 | 7 | 123-138 | FAM | 3 | 0.61 | (gct)8 | 68.3 | 0.31 | atcagcagccatggcagcgacc | aacagcagccaaggcagcgacc | 55 | |
| RM118 | 7 | 157-163 | FAM | 3 | 0.56 | (ga)8 | 70.1 | 0.83 | 0.43 | ccaatcggagccaccggagagc | ccaaacggagccaccggagagc | 67 |
| RM2 | 7 | 141-154 | TET | 5 | 0.73 | COMPLEX | 61 | 0.55 | 0.13 | acgtgtcaccgcttcctc | atgtccgggatctcatcg | 55 |
| RM182 | 7 | 326-377? | TET | 7? | 0.64 | (at)16 | 66.4 | 1.02 | 0.21 | tgggatgcagagtgcagttggc | agggaagcagagagcagaaggc | 55 |
| RM505 | 7 | 180-205 | HEX | 3 | 0.54 | (ct)12 | 61.4 | 0.14 | agagttatgagccgggtgtg | gatttggcgatcttagcagc | 55 | |
| RM234 | 7 | 133-167 | HEX | 8 | 0.83 | (ct)25 | 62.4 | 1.03 | 0.26 | acagtatccaaggccctgg | cacgtgagacaaagacggag | 55 |
| RM248 | 7 | 81-106 | HEX | 6 | 0.82 | (ct)25 | 61.4 | 1.07 | 0.15 | tccttgtgaaatctggtccc | gtagcctagcatggtgcatg | 55 |
| Locus | Chrom. | Size range (bp)* | Dye label | Allele no.* | P.I.C.* | Motif | Ave. Tm (GC)** | Ave. Std. Dev.* | Ave. Std. Dev. w/T4* | Forward primer sequence | Reverse primer sequence | Annealing temp. (GC) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RM481 | 7 | 133-176 | FAM | 9 | 0.86 | (caa)12 | 60.4 | 0.33 | tagctagccgattgaatggc | caccaccaccaaagaagaag | 55 | |
| RM418 | 7 | 259-311 | FAM | 8 | 0.84 | (att)21 | 61.4 | 0.51 | tcgcgtatcgtcatgcatag | gagcacaaaagccacgaacg | 55 | |
| RM455 | 7 | 127-134 | TET | 2 | 0.5 | (ttct)5 | 61.4 | 0.12 | aacaacccaccacctgtctc | agaaggaaaagggcacgaac | 55 | |
| RM420 | 7 | 183-201 | TET | 3 | 0.54 | (aaat)7 | 61.5 | 0.21 | ggacagaatgtgaagacagtcg | acaaaaccaccaacgcaacc | 55 | |
| RM11 | 7 | 121-148 | HEX | 7 | 0.83 | (ga)17 | 62.2 | 0.20 | tctcctcttcccccgatc | atagcgggcgaggcttag | 55 | |
| RM478 | 7 | 197-211 | HEX | 7 | 0.84 | (ag)12 | 62.5 | 0.22 | cagctggggaagagagagag | acagaaacaaaacgcacccc | 55 |
| Locus | Chrom. | Size range (bp)* | Dye label | Allele no.* | P.I.C.* | Motif | Ave. Tm (GC)** | Ave. Std. Dev.* | Ave. Std. Dev. w/T4* | Forward primer sequence | Reverse primer sequence | Annealing temp. (GC) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RM337 | 8 | 155-188 | FAM | 2 | 0.66 | (ctt)4-19-(ctt)8 | 62.5 | 0.03 | gtaggaaaggaagggcagag | gaaggaaaggaagggcagag | 55 | |
| RM38 | 8 | 247-278 | FAM | 7 | 0.73 | (ga)16 | 62.3 | 0.16 | 0.09 | acgagctctcgatcagccta | tcggtctccatgtcccac | 55 |
| RM44 | 8 | 93-133 | FAM | 5 | 0.64 | (ga)16 | 62.4 | 0.27 | acgggcaatccgaacaacc | tcgggaaaacctaccctacc | 55 | |
| RM350 | 8 | 201-214 | TET | 4 | 0.67 | (ct)10 | 66.6 | 0.06 | tgatcgtcgcgattcccggc | agaacgacgcgaaacccggc | 55 | |
| RM230 | 8 | 235-259 | TET | 4 | 0.69 | (agg)4(ga)9a(ag)13 | 61.3 | 0.43 | 0.12 | gccagaccgtggatgttc | caccgcagtcacttttcaag | 55 |
| RM25 | 8 | 130-158 | HEX | 8 | 0.82 | (ga)18 | 60.6 | gaaaccaccacacctcaccg | ctaccatcaaaaccaatgttc | 55 | ||
| RM149 | 8 | 243-303 | HEX | 6 | 0.73 | (at)10 | 68.3 | 0.73 | gctgaccaacgaacctaggccg | gcagaccaacgaaccaaggccg | 55 |
| Locus | Chrom. | Size range (bp)* | Dye label | Allele no.* | P.I.C.* | Motif | Ave. Tm (GC)** | Ave. Std. Dev.* | Ave. Std. Dev. w/T4* | Forward primer sequence | Reverse primer sequence | Annealing temp. (GC) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RM408 | 8 | 121-131 | FAM | 3 | 0.62 | (ct)13 | 63.5 | 0.11 | caacgagctaacttccgtcc | acagcaacaagggaagcagacc | 55 | |
| RM72 | 8 | 152-200 | FAM | 7 | 0.85 | (tat)5c(att)15 | 58 | 0.20 | ccggcgataaaacaatgag | ccggcgaaaaaacaaagag | 55 | |
| RM483 | 8 | 293-352 | FAM | 8 | 0.89 | (at)26 | 61.4 | 0.12 | cttccaccataaaaccggag | acaccggagaacaagaagcc | 55 | |
| RM284 | 8 | 143-153 | TET | 5 | 0.63 | (ga)8 | 61.6 | 0.10 | atctctgatactccatccatcc | cctgtacgttgatccgaagc | 55 | |
| RM447 | 8 | 106-121 | TET | 4 | 0.67 | (ctt)8 | 63.5 | 0.30 | cccttgtgctgtctcctctc | acgggcaacaacaccaacac | 55 | |
| RM477 | 8 | 220-227 | TET | 2 | 0.47 | (aatt)5 | 62.5 | 0.10 | tctcgcggtatagtttgtgc | accacaaccagcagccacag | 55 | |
| RM152 | 8 | 140-158 | HEX | 4 | 0.75 | (ggc)10 | 64.5 | 0.16 | gaaaccaccacacctcaccg | gaaaccaccacaccacaccg | 55 | |
| RM310 | 8 | 84-120 | HEX | 7 | 0.83 | (gt)19 | 51.5 | 0.23 | 0.21 | ccaaaacatttaaaatatcatg | ccaaaacaaaaaaaaaaacaag | 55 |
| RM433 | 8 | 224-237 | HEX | 5 | 0.49 | (ag)13 | 0.12 | tgcgctgaactaaacacagc | agacaaaccaggccaaacac | 55 |
| Locus | Chrom. | Size range (bp)* | Dye label | Allele no.* | P.I.C.* | Motif | Ave. Tm (GC)** | Ave. Std. Dev.* | Ave. Std. Dev. w/T4* | Forward primer sequence | Reverse primer sequence | Annealing temp. (GC) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RM105 | 9 | 127-141 | FAM | 4 | 0.76 | (cct)6 | 70.1 | 0.18 | gtcgtcgacccatcggagccac | gacgacgacccaacggagccac | 55 | |
| RM328 | 9 | 180-191 | FAM | 2 | 0.47 | (cat)5 | 62.6 | 0.45 | 0.19 | catagtggagtatgcagctgc | caaagaggagaaagcagcagc | 55 |
| RM316 | 9 | 195-215 | TET | 5 | 0.79 | (gt)8-(tg)9(tttg)4(tg)4 | 62.5 | 0.26 | ctagttgggcatacgatggc | caagaagggcaaacgaaggc | 55 | |
| RM108 | 9 | 68-83 | TET | 3 | 0.6 | (ggt)10 | 68.3 | 0.50 | tctcttgcgcgcacactggcac | acacaagcgcgcacacaggcac | 67 | |
| RM215 | 9 | 145-155 | TET | 4 | 0.63 | (ct)16 | 0.06 | caaaatggagcagcaagagc | tgagcacctccttctctgtag | 55 | ||
| RM409 | 9 | 87-96 | HEX | 4 | 0.63 | (agc)8 | 61.4 | 0.35 | 0.12 | ccgtctcttgctagggattc | ggggagaaaagcaaacacag | 55 |
| RM296 | 9 | 119-128 | HEX | 2 | 0.43 | (ga)10 | 0.25 | 0.12 | cacatggcaccaacctcc | gccaagtcattcactactctgg | 55 | |
| RM245 | 9 | 137-154 | HEX | 3 | 0.62 | (ct)14 | 60.4 | 0.34 | atgccgccagtgaatagc | ctgagaatccaattatctgggg | 55 |
| Locus | Chrom. | Size range (bp)* | Dye label | Allele no.* | P.I.C.* | Motif | Ave. Tm (GC)** | Ave. Std. Dev.* | Ave. Std. Dev. w/T4* | Forward primer sequence | Reverse primer sequence | Annealing temp. (GC) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RM171 | 10 | 324-352 | FAM | 5 | 0.74 | (gatg)5 | 62.6 | 0.17 | aacgcgaggacacgtacttac | aacgcgaggacacgaacaaac | 55 | |
| RM333 | 10 | 163-215 | FAM | 10 | 0.83 | (tat)19(ctt)19 | 62.7 | 0.30 | 0.34 | gtacgactacgagtgtcaccaa | gaacgacaacgagagacaccaa | 55 |
| RM184 | 10 | 205-221 | TET | 4 | 0.66 | (ca)7 | 66.4 | 0.34 | atcccattcgccaaaaccggcc | aacccaaacgccaaaaccggcc | 55 | |
| RM147 | 10 | 95-102 | TET | 2 | 0.5 | (ttcc)5(ggt)5 | 68.3 | 0.36 | tacggcttcggcggctgattcc | aacggcaacggcggcagaaacc | 55 | |
| RM222 | 10 | 201-221 | HEX | 6 | 0.76 | (ct)18 | 60.2 | 0.74 | 0.23 | cttaaatgggccacatgcg | caaagcttccggccaaaag | 55 |
| RM239 | 10 | 141-148 | HEX | 3 | 0.46 | (ag)5tg(ag)2 | 61.4 | 0.39 | tacaaaatgctgggtacccc | acatatgggacccacctgtc | 55 |
| Locus | Chrom. | Size range (bp)* | Dye label | Allele no.* | P.I.C.* | Motif | Ave. Tm (GC)** | Ave. Std. Dev.* | Ave. Std. Dev. w/T4* | Forward primer sequence | Reverse primer sequence | Annealing temp. (GC) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RM206 | 11 | 125-199 | FAM | 9 | 0.88 | (ct)21 | 59.4 | 0.38 | 0.11 | cccatgcgtttaactattct | cgttccatcgatccgtatgg | 55 |
| RM144 | 11 | 221-261 | TET | 6 | 0.76 | (att)11 | 64.5 | 1.60 | 0.48 | tgccctggcgcaaatttgatcc | agcccaggcgcaaaaaagaacc | 55 |
| RM287 | 11 | 98-118 | TET | 7 | 0.83 | (ga)21 | 56.5 | ttccctgttaagagagaaatc | gtgtatttggtgaaagcaac | 55 | ||
| RM202 | 11 | 161-190 | TET | 6 | 0.82 | (ct)30 | 60.5 | 0.32 | cagattggagatgaagtcctcc | ccagcaagcatgtcaatgta | 55 | |
| RM229 | 11 | 104-133 | HEX | 6 | 0.83 | (tc)11(ct)5c3(ct)5 | 60.4 | 0.74 | 0.16 | cactcacacgaacgactgac | cgcaggttcttgtgaaatgt | 55 |
| RM332 | 11 | 162-180 | HEX | 5 | 0.65 | (ctt)5-12-(ctt)14 | 0.12 | gcgaaggcgaaggtgaag | gcgaaggcgaaggagaag | 55 | ||
| RM116 | 11 | 276-283 | HEX | 3 | 0.59 | (ct)9 | 68.3 | 0.32 | tcacgcacagcgtgccgttctc | acacgcacagcgagccgaacac | 55 | |
| RM20 | 11 | 213-321 | see notes | 4 | 0.57 | (att)n | 0.48 | see chrom. Kit 12 | see Chrom. Kit 12 | see chrom. Kit 12 |
| Locus | Chrom. | Size range (bp)* | Dye label | Allele no.* | P.I.C.* | Motif | Ave. Tm (GC)** | Ave. Std. Dev.* | Ave. Std. Dev. w/T4* | Forward primer sequence | Reverse primer sequence | Annealing temp. (GC) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RM20 | 12 | 262-299 | FAM | 7 | 0.82 | (att)14 | 0.35 | atcttgtccctgcaggtcat | gaaacagaggcacatttcattg | 55 | ||
| RM235 | 12 | 95-134 | FAM | 6 | 0.85 | (ct)24 | 61.4 | 0.11 | agaagctagggctaacgaac | tcacctggtcagcctctttc | 55 | |
| RM 309 | 12 | 167-175 | TET | 3 | 0.39 | (gt)13 | 62.6 | 0.54 | 0.09 | gtagatcacgcacctttctgg | gaagaacacgcaccaaacagg | 55 |
| RM101 | 12 | 262-333 | HEX | 6 | 0.59 | (ct)37 | 66.2 | 0.90 | 0.30 | gtgaatggtcaagtgacttaggtggc | gagaaaggacaagagacaaaggaggc | 55 |
| RM 247 | 12 | 130-171 | HEX | 8 | 0.84 | (ct)16 | 62.9 | 0.33 | 0.15 | tagtgccgatcgatgtaacg | catatggttttgacaaagcg | 55 |
| RM 270 | 12 | 105-120 | HEX | 5 | 0.29 | (ga)13 | 61.3 | 0.20 | ggccgttggttctaaaatc | tgcgcagtatcatcggcgag | 55 |
| Locus | Chrom. | Size range (bp)* | Dye label | Allele no.* | P.I.C.* | Motif | Ave. Tm (GC)** | Ave. Std. Dev.* | Ave. Std. Dev. w/T4* | Forward primer sequence | Reverse primer sequence | Annealing temp. (GC) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RM464 | 9 | 262-271 | FAM | 3 | 0.57 | (at)21 | 60.4 | 0.46 | aacgggcacattctgtcttc | aggaagaccagaacgaaacc | 55 | |
| RM464 | 9 | 228-237 | FAM | 2 | 0.5 | (at)21 | 60.4 | 0.46 | SEE ABOVE | SEE ABOVE | SEE ABOVE | |
| RM434 | 9 | 149-166 | FAM | 4 | 0.63 | (tc)12 | 62.5 | 0.24 | gcctcatccctctaaccctc | caagaaagaacagagcgagg | 55 | |
| RM451 | 4 | 202-212 | TET | 2 | 0.5 | (gat)8 | 62.4 | 0.49 | gatcccctccgtcaaacac | cccaacaccaaaccacaacc | 55 | |
| RM431 | 1 | 240-255 | TET | 6 | 0.76 | (ag)16 | 60.4 | ? | tcctgcgaactgaagagttg | agagcaaaaccctggttcac | 55 | |
| RM490 | 1 | 85-108 | TET | 8 | 0.81 | (ct)13 | 60.4 | ? | 0.26 | atctgcacactgcaaacacc | agcaagcagtgctttcagag | 55 |
| RM307 | 4 | 124-176 | TET | 7 | 0.83 | (at)14(gt)21 | 62.5 | ? | 0.25 | gtactaccgacctaccgttcac | ctgctatgcatgaactgctc | 55 |
| RM467 | 10 | 207-230 | HEX | 6 | 0.71 | (tc)21 | 63.3 | 0.36 | ggtctctctctctctctctctctc | caccagacaaaacaacagcg | 55 | |
| RM228 | 10 | 107-155 | HEX | 7 | 0.83 | (ca)6(ga)36 | 61 | 0.13 | ctggccattagtccttgg | gcttgcggctctgcttac | 55 |
| Locus | Chrom. | Size range (bp)* | Dye label | Allele no.* | P.I.C.* | Motif | Ave. Tm (GC)** | Ave. Std. Dev.* | Ave. Std. Dev. w/T4* | Forward primer sequence | Reverse primer sequence | Annealing temp. (GC) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RM474 | 10 | 225-261 | FAM | 8 | 0.79 | (at)13 | 60.4 | 0.30 | aagatgtacgggtggcattc | aaagagcaggagagcaaagg | 55 | |
| RM484 | 10 | 290-298 | FAM | 4 | 0.63 | (at)9 | 63.5 | 0.08 | tctccctcctcaccattgtc | agcagcccacacacacacac | 55 | |
| RM21 | 11 | 132-170 | FAM | 7 | 0.72 | (ga)18 | 63.5 | 0.21 | acagtattccgtaggcacgg | gctccatgagggtggtagag | 55 | |
| RM279 | 2 | 148-172 | TET | 6 | 0.73 | (ga)16 | 64.5 | gcgggagagggatctcct | ggctaggagttaacctcgcg | 55 | ||
| RM277 | 12 | 117-123 | TET | 4 | 0.56 | (ga)11 | 60.2 | 0.16 | cggtcaaatcatcacctgac | caaggcttgcaagggaag | 55 | |
| RM224 | 11 | 121-159 | HEX | 9 | 0.88 | (aag)8(ag)13 | 59.4 | 0.14 | atcgatcgatcttcacgagg | tgctataaaaggcattcggg | 55 | |
| RM415 | 12 | 230-245 | HEX | 7 | 0.8 | (at)21 | cttcgatccatcatccatgg | aaagcagaacgcagaaacgg | 55 |