Symbol: Is the acronym
or the abbreviation by which the protein is called. Usually it is the same
as gene name but letters are in all CAPS.
Genome Browser: It links the protein entry to the respective protein sequence on the Rice Genome Browser.
Accession number: Is
the Swissprot accession number,
also similar to the "AC" field from SWALL
(EMBL) record and "ACCESSION" field of the GenBank
records of the respective protein entry. Links the protein entry to the
other databases namely, GenBank
protein database, SWALL
from EMBL and SWISS-PROT.
Organism: Represents
the taxonomy of the organism from which the protein sequence was derived.
Molecular function:
List of GO term(s) that defines the molecular
function of the protein molecule (protein entry)
Biological process:
List of GO term(s) defines the biological
process where the function of the respective protein entry is required
Cellular component:
List of GO term(s) that identifies the localization of the protein entry
in the sub cellular
component
Evidence:
For the evidences the database uses:
The Interpro
term as an evidence for the respective mapping of the GO term to the gene
product. The IDs will link to the Interpro
database.
The literature (peer reviewed
publication) citing the respective mapping of the GO term to the gene product.
The reference IDs will link them to the record listed in the Gramene
Publication database.
Evidence code:
Lists the evidence
code, that was used in making the assertion on the GO-Interpro term
mapping (mainly IEA),
however the the GO-Interpro term mapping based on literature citation or
reviewed by the curator will carry an evidence code other than IEA.
Pfam: Describes
the protein family to which the respective protein entry belongs to. Links
the Pfam ID to the Pfam
database.
Prosite: Describes
the various prosite signatures the respective protein entry carries. The
Prosite IDs link to Prosite
database.
Physiochemical features:
Links the protein entry to the Expasy for analyses of physio-chemical features
analyzed by ProtParam
tool.
PlantTissue/Cell type:
Lists
the localization of the protein entry in a plant, by way of using the Plant
Ontology (PO) term. Plant ontology being developed by TAIR
and Gramene, will describe the terms
of a plant at morphological and anatomical level except at the sub cellular
level (It is a part of Gene Ontology).
Keywords: List
of keywords that are associated with the protein entry.
Comments:
Will carry the concise notes from curator's records, which is of interest
to the users community.
Similarity to other proteins: The
terms under this table links to the BLINK from the NCBI,
to find out the homologues / orthologues / proetins having similar 3D-structures
with the nearest relative in taxonomic term. It also links to the SAS (Sequence Annotated by Structure)
database at University College London to identify similarity to protein
3D structure.