Linking back to Gramene

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[Database]   [URL information]   [Protein Database]  

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Database

Gramene Database Release 4.1.0, Feb. 25, 2002
Rice Protein Database Release 4.1.0, Feb. 25, 2002

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URL information

Generic_url:	http://www.gramene.org
BLAST search	http://www.gramene.org/gramene/searches/blast
Physical or Genetic map search	http://www.gramene.org/maps/viewer
Molecular Marker search	http://www.gramene.org/maps/marker_search
Ontology search	http://www.gramene.org/plant_ontology/
Rice Protein Database search	http://www.gramene.org/perl/protein_search
url_syntax:Accession number* url_syntax:SWALL / SWISS PROT ID url_syntax:Gramene internal ID (For more information see below )	http://www.gramene.org/perl/protein_search?acc=Accession number http://www.gramene.org/perl/protein_search?swall=SWALL ID http://www.gramene.org/perl/protein_search?protein_id=Gramene ID
Literature search	http://www.gramene.org/perl/pub_search
Sequenced Rice Clone	http://www.gramene.org/perl/contigview?clone=Accession number http://www.gramene.org/perl/unisearch?type=clone&q=Clone Name
Gene	http://www.gramene.org/perl/geneview?gene=Gramene ID http://www.gramene.org/perl/geneview?gene=Genbank Accession

* (SWISSPROT Accession numbers)

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Protein Database links

Use the Protein identifier file swissprot_linkback.txt

File format is as follows:
Accession number|SWALL or SWISSPROT ID|Gramene Primary Identifier|Secondary Identifier
 for example:
P19395|UGST_ORYSA|P19395|78073

Using the SWISSPROT accession number (which is also our primary identifier):
http://www.gramene.org/perl/protein_search?acc=accession number
http://www.gramene.org/perl/protein_search?acc=P19395

Using the SWISSPROT/SWALL ID:
http://www.gramene.org/perl/protein_search?swall=SWISSPROT ID
http://www.gramene.org/perl/protein_search?swall=UGST_ORYSA

Using the Gramene internal IDs (Gramene's secondary ID):
http://www.gramene.org/perl/protein_search?protein_id=Gramene ID
http://www.gramene.org/perl/protein_search?protein_id=78073

Want Gramene IDs corresponding to GenBank IDs: click here.

For more help on link back to Rice Protein Database (RPD): click here.