/*
This documents the processing of BAC-SSR alignments for CU-SSRs
Lenny Teytelman
April 6, 2002
*/

The 1,847 BACs/PACs are from the GenBenk Entrez Nucleotide query:

"Oryza [ORGN] AND (30000 [SLEN]:250000 [SLEN]) AND ((htg [KYWD] OR BAC
[ALL] OR chromosome [TITL] OR PAC [ALL]) NOT (marker [TITL] OR cDNA
[TITL] OR mRNA [TITL] OR RAPD [TITL] OR GSS [KYWD] OR telomere [TITL]
OR protein[TITL]))".

The 524 CU SSRs are from www.gramene.org.  Only 499 of the SSRs had
primers.

The SSRs and BACs where aligned using e-PCR.  e-PCR was run with default
settings of 50-bp margin and 0 allowed mismatches.  This resulted in
297 matches, from 228 SSRs to 246 sequenced clones.
