SO:0000001	\N	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000001	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	44999	\N	SOFA	sequence	0	SO	region	region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000001	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	489566	SOFA	SOFA	sequence	1	SO	sequence_feature	region
SO:0000002	\N	\N	"A folded sequence." [SO:ke]	SO:0000002	"A folded sequence." [SO:ke]	45000	\N	\N	sequence	0	SO	sequence_secondary_structure	sequence_secondary_structure
SO:0001411	SO:0000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000002	"A folded sequence." [SO:ke]	489567	\N	SOFA	sequence	1	SO	biological_region	sequence_secondary_structure
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000002	"A folded sequence." [SO:ke]	1071974	SOFA	SOFA	sequence	2	SO	region	sequence_secondary_structure
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000002	"A folded sequence." [SO:ke]	1902990	SOFA	SOFA	sequence	3	SO	sequence_feature	sequence_secondary_structure
SO:0000003	\N	\N	"G-quartets are unusual nucleic acid structures consisting of a planar arrangement where each guanine is hydrogen bonded by hoogsteen pairing to another guanine in the quartet." [http://www.ncbi.nlm.nih.gov/pubmed/7919797?dopt=Abstract]	SO:0000003	"G-quartets are unusual nucleic acid structures consisting of a planar arrangement where each guanine is hydrogen bonded by hoogsteen pairing to another guanine in the quartet." [http://www.ncbi.nlm.nih.gov/pubmed/7919797?dopt=Abstract]	45001	\N	\N	sequence	0	SO	G_quartet	G_quartet
SO:0000002	SO:0000003	\N	"A folded sequence." [SO:ke]	SO:0000003	"G-quartets are unusual nucleic acid structures consisting of a planar arrangement where each guanine is hydrogen bonded by hoogsteen pairing to another guanine in the quartet." [http://www.ncbi.nlm.nih.gov/pubmed/7919797?dopt=Abstract]	489568	\N	\N	sequence	1	SO	sequence_secondary_structure	G_quartet
SO:0001411	SO:0000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000003	"G-quartets are unusual nucleic acid structures consisting of a planar arrangement where each guanine is hydrogen bonded by hoogsteen pairing to another guanine in the quartet." [http://www.ncbi.nlm.nih.gov/pubmed/7919797?dopt=Abstract]	1071975	\N	SOFA	sequence	2	SO	biological_region	G_quartet
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000003	"G-quartets are unusual nucleic acid structures consisting of a planar arrangement where each guanine is hydrogen bonded by hoogsteen pairing to another guanine in the quartet." [http://www.ncbi.nlm.nih.gov/pubmed/7919797?dopt=Abstract]	1902991	SOFA	SOFA	sequence	3	SO	region	G_quartet
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000003	"G-quartets are unusual nucleic acid structures consisting of a planar arrangement where each guanine is hydrogen bonded by hoogsteen pairing to another guanine in the quartet." [http://www.ncbi.nlm.nih.gov/pubmed/7919797?dopt=Abstract]	2927487	SOFA	SOFA	sequence	4	SO	sequence_feature	G_quartet
SO:0000004	\N	SOFA	"" []	SO:0000004	"" []	45002	\N	SOFA	sequence	0	SO	interior_coding_exon	interior_coding_exon
SO:0000195	SO:0000004	SOFA	"An exon whereby at least one base is part of a codon (here, 'codon' is inclusive of the stop_codon)." [SO:ke]	SO:0000004	"" []	489569	SOFA	SOFA	sequence	1	SO	coding_exon	interior_coding_exon
SO:0000147	SO:0000195	SOFA	"A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing." [SO:ke]	SO:0000004	"" []	1071976	SOFA	SOFA	sequence	2	SO	exon	interior_coding_exon
SO:0000833	SO:0000147	SOFA	"A region of a transcript." [SO:ke]	SO:0000004	"" []	1902992	SOFA	SOFA	sequence	3	SO	transcript_region	interior_coding_exon
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000004	"" []	2927488	SOFA	SOFA	sequence	4	SO	transcript	interior_coding_exon
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000004	"" []	2927489	SOFA	SOFA	sequence	4	SO	biological_region	interior_coding_exon
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000004	"" []	4000937	SOFA	SOFA	sequence	5	SO	gene_member_region	interior_coding_exon
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000004	"" []	5740684	SOFA	SOFA	sequence	7	SO	region	interior_coding_exon
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000004	"" []	4965635	SOFA	SOFA	sequence	6	SO	biological_region	interior_coding_exon
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000004	"" []	5996355	SOFA	SOFA	sequence	8	SO	sequence_feature	interior_coding_exon
SO:0000005	\N	SOFA	"The many tandem repeats (identical or related) of a short basic repeating unit; many have a base composition or other property different from the genome average that allows them to be separated from the bulk (main band) genomic DNA." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000005	"The many tandem repeats (identical or related) of a short basic repeating unit; many have a base composition or other property different from the genome average that allows them to be separated from the bulk (main band) genomic DNA." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	45003	\N	SOFA	sequence	0	SO	satellite_DNA	satellite_DNA
SO:0000705	SO:0000005	SOFA	"Two or more adjacent copies of a region (of length greater than 1)." [SO:ke]	SO:0000005	"The many tandem repeats (identical or related) of a short basic repeating unit; many have a base composition or other property different from the genome average that allows them to be separated from the bulk (main band) genomic DNA." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	489570	SOFA	SOFA	sequence	1	SO	tandem_repeat	satellite_DNA
SO:0000657	SO:0000705	SOFA	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000005	"The many tandem repeats (identical or related) of a short basic repeating unit; many have a base composition or other property different from the genome average that allows them to be separated from the bulk (main band) genomic DNA." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1071977	SOFA	SOFA	sequence	2	SO	repeat_region	satellite_DNA
SO:0001411	SO:0000657	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000005	"The many tandem repeats (identical or related) of a short basic repeating unit; many have a base composition or other property different from the genome average that allows them to be separated from the bulk (main band) genomic DNA." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1902993	SOFA	SOFA	sequence	3	SO	biological_region	satellite_DNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000005	"The many tandem repeats (identical or related) of a short basic repeating unit; many have a base composition or other property different from the genome average that allows them to be separated from the bulk (main band) genomic DNA." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2927490	SOFA	SOFA	sequence	4	SO	region	satellite_DNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000005	"The many tandem repeats (identical or related) of a short basic repeating unit; many have a base composition or other property different from the genome average that allows them to be separated from the bulk (main band) genomic DNA." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4000939	SOFA	SOFA	sequence	5	SO	sequence_feature	satellite_DNA
SO:0000006	\N	SOFA	"A region amplified by a PCR reaction." [SO:ke]	SO:0000006	"A region amplified by a PCR reaction." [SO:ke]	45004	\N	SOFA	sequence	0	SO	PCR_product	PCR_product
SO:0000695	SO:0000006	SOFA	"A sequence used in experiment." [SO:ke]	SO:0000006	"A region amplified by a PCR reaction." [SO:ke]	489571	SOFA	SOFA	sequence	1	SO	reagent	PCR_product
SO:0001409	SO:0000695	SOFA	"A region which is intended for use in an experiment." [SO:cb]	SO:0000006	"A region amplified by a PCR reaction." [SO:ke]	1071978	SOFA	SOFA	sequence	2	SO	biomaterial_region	PCR_product
SO:0000001	SO:0001409	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000006	"A region amplified by a PCR reaction." [SO:ke]	1902994	SOFA	SOFA	sequence	3	SO	region	PCR_product
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000006	"A region amplified by a PCR reaction." [SO:ke]	2927491	SOFA	SOFA	sequence	4	SO	sequence_feature	PCR_product
SO:0000007	\N	SOFA	"One of a pair of sequencing reads in which the two members of the pair are related by originating at either end of a clone insert." [SO:ls]	SO:0000007	"One of a pair of sequencing reads in which the two members of the pair are related by originating at either end of a clone insert." [SO:ls]	45005	\N	SOFA	sequence	0	SO	read_pair	read_pair
SO:0000149	SO:0000007	SOFA	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	SO:0000007	"One of a pair of sequencing reads in which the two members of the pair are related by originating at either end of a clone insert." [SO:ls]	489572	SOFA	SOFA	sequence	1	SO	contig	read_pair
SO:0000150	SO:0000007	SOFA	"A sequence obtained from a single sequencing experiment. Typically a read is produced when a base calling program interprets information from a chromatogram trace file produced from a sequencing machine." [SO:rd]	SO:0000007	"One of a pair of sequencing reads in which the two members of the pair are related by originating at either end of a clone insert." [SO:ls]	489573	SOFA	SOFA	sequence	1	SO	read	read_pair
SO:0001790	SO:0000007	SOFA	"An assembly region that has been sequenced from both ends resulting in a read_pair (mate_pair)." [SO:ke]	SO:0000007	"One of a pair of sequencing reads in which the two members of the pair are related by originating at either end of a clone insert." [SO:ls]	489574	SOFA	SOFA	sequence	1	SO	paired_end_fragment	read_pair
SO:0000143	SO:0000149	SOFA	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0000007	"One of a pair of sequencing reads in which the two members of the pair are related by originating at either end of a clone insert." [SO:ls]	1902999	SOFA	SOFA	sequence	3	SO	assembly_component	read_pair
SO:0000148	SO:0000149	SOFA	"One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's." [SO:ls]	SO:0000007	"One of a pair of sequencing reads in which the two members of the pair are related by originating at either end of a clone insert." [SO:ls]	1903000	SOFA	SOFA	sequence	3	SO	supercontig	read_pair
SO:0000353	SO:0000149	SOFA	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0000007	"One of a pair of sequencing reads in which the two members of the pair are related by originating at either end of a clone insert." [SO:ls]	1903001	SOFA	SOFA	sequence	3	SO	sequence_assembly	read_pair
SO:0000143	SO:0000150	SOFA	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0000007	"One of a pair of sequencing reads in which the two members of the pair are related by originating at either end of a clone insert." [SO:ls]	1071982	SOFA	SOFA	sequence	2	SO	assembly_component	read_pair
SO:0000149	SO:0000150	SOFA	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	SO:0000007	"One of a pair of sequencing reads in which the two members of the pair are related by originating at either end of a clone insert." [SO:ls]	1071983	SOFA	SOFA	sequence	2	SO	contig	read_pair
SO:0000143	SO:0001790	SOFA	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0000007	"One of a pair of sequencing reads in which the two members of the pair are related by originating at either end of a clone insert." [SO:ls]	1071984	SOFA	SOFA	sequence	2	SO	assembly_component	read_pair
SO:0001410	SO:0000143	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000007	"One of a pair of sequencing reads in which the two members of the pair are related by originating at either end of a clone insert." [SO:ls]	2018209	SOFA	SOFA	sequence	4	SO	experimental_feature	read_pair
SO:0000719	SO:0000148	SOFA	"An ordered and oriented set of scaffolds based on somewhat weaker sets of inferential evidence such as one set of mate pair reads together with supporting evidence from ESTs or location of markers from SNP or microsatellite maps, or cytogenetic localization of contained markers." [FB:WG]	SO:0000007	"One of a pair of sequencing reads in which the two members of the pair are related by originating at either end of a clone insert." [SO:ls]	2018210	SOFA	SOFA	sequence	4	SO	ultracontig	read_pair
SO:0001876	SO:0000148	SOFA	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0000007	"One of a pair of sequencing reads in which the two members of the pair are related by originating at either end of a clone insert." [SO:ls]	2018211	SOFA	\N	sequence	4	SO	partial_genomic_sequence_assembly	read_pair
SO:0001248	SO:0000353	SOFA	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0000007	"One of a pair of sequencing reads in which the two members of the pair are related by originating at either end of a clone insert." [SO:ls]	5180655	SOFA	SOFA	sequence	7	SO	assembly	read_pair
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000007	"One of a pair of sequencing reads in which the two members of the pair are related by originating at either end of a clone insert." [SO:ls]	6409691	SOFA	SOFA	sequence	9	SO	region	read_pair
SO:0001876	SO:0000719	SOFA	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0000007	"One of a pair of sequencing reads in which the two members of the pair are related by originating at either end of a clone insert." [SO:ls]	3173852	SOFA	\N	sequence	5	SO	partial_genomic_sequence_assembly	read_pair
SO:0000353	SO:0001876	SOFA	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0000007	"One of a pair of sequencing reads in which the two members of the pair are related by originating at either end of a clone insert." [SO:ls]	4385696	\N	SOFA	sequence	6	SO	sequence_assembly	read_pair
SO:0001410	SO:0001248	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000007	"One of a pair of sequencing reads in which the two members of the pair are related by originating at either end of a clone insert." [SO:ls]	5817326	SOFA	SOFA	sequence	8	SO	experimental_feature	read_pair
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000007	"One of a pair of sequencing reads in which the two members of the pair are related by originating at either end of a clone insert." [SO:ls]	6778553	SOFA	SOFA	sequence	10	SO	sequence_feature	read_pair
SO:0000010	\N	\N	"" []	SO:0000010	"" []	45006	\N	\N	sequence	0	SO	protein_coding	protein_coding
SO:0000401	SO:0000010	\N	"" []	SO:0000010	"" []	489575	\N	\N	sequence	1	SO	gene_attribute	protein_coding
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000010	"" []	1071985	\N	\N	sequence	2	SO	feature_attribute	protein_coding
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000010	"" []	1903002	\N	\N	sequence	3	SO	sequence_attribute	protein_coding
SO:0000011	\N	\N	"" []	SO:0000011	"" []	45007	\N	\N	sequence	0	SO	non_protein_coding	non_protein_coding
SO:0000401	SO:0000011	\N	"" []	SO:0000011	"" []	489576	\N	\N	sequence	1	SO	gene_attribute	non_protein_coding
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000011	"" []	1071986	\N	\N	sequence	2	SO	feature_attribute	non_protein_coding
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000011	"" []	1903003	\N	\N	sequence	3	SO	sequence_attribute	non_protein_coding
SO:0000012	\N	\N	"The primary transcript of any one of several small cytoplasmic RNA molecules present in the cytoplasm and sometimes nucleus of a Eukaryote." [http://www.ebi.ac.uk/embl/WebFeat/align/scRNA_s.html]	SO:0000012	"The primary transcript of any one of several small cytoplasmic RNA molecules present in the cytoplasm and sometimes nucleus of a Eukaryote." [http://www.ebi.ac.uk/embl/WebFeat/align/scRNA_s.html]	45008	\N	\N	sequence	0	SO	scRNA_primary_transcript	scRNA_primary_transcript
SO:0000483	SO:0000012	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000012	"The primary transcript of any one of several small cytoplasmic RNA molecules present in the cytoplasm and sometimes nucleus of a Eukaryote." [http://www.ebi.ac.uk/embl/WebFeat/align/scRNA_s.html]	489577	\N	SOFA	sequence	1	SO	nc_primary_transcript	scRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000012	"The primary transcript of any one of several small cytoplasmic RNA molecules present in the cytoplasm and sometimes nucleus of a Eukaryote." [http://www.ebi.ac.uk/embl/WebFeat/align/scRNA_s.html]	1071987	SOFA	SOFA	sequence	2	SO	primary_transcript	scRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000012	"The primary transcript of any one of several small cytoplasmic RNA molecules present in the cytoplasm and sometimes nucleus of a Eukaryote." [http://www.ebi.ac.uk/embl/WebFeat/align/scRNA_s.html]	1903004	SOFA	SOFA	sequence	3	SO	transcript	scRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000012	"The primary transcript of any one of several small cytoplasmic RNA molecules present in the cytoplasm and sometimes nucleus of a Eukaryote." [http://www.ebi.ac.uk/embl/WebFeat/align/scRNA_s.html]	2927496	SOFA	SOFA	sequence	4	SO	gene_member_region	scRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000012	"The primary transcript of any one of several small cytoplasmic RNA molecules present in the cytoplasm and sometimes nucleus of a Eukaryote." [http://www.ebi.ac.uk/embl/WebFeat/align/scRNA_s.html]	4000942	SOFA	SOFA	sequence	5	SO	biological_region	scRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000012	"The primary transcript of any one of several small cytoplasmic RNA molecules present in the cytoplasm and sometimes nucleus of a Eukaryote." [http://www.ebi.ac.uk/embl/WebFeat/align/scRNA_s.html]	4965637	SOFA	SOFA	sequence	6	SO	region	scRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000012	"The primary transcript of any one of several small cytoplasmic RNA molecules present in the cytoplasm and sometimes nucleus of a Eukaryote." [http://www.ebi.ac.uk/embl/WebFeat/align/scRNA_s.html]	5740685	SOFA	SOFA	sequence	7	SO	sequence_feature	scRNA_primary_transcript
SO:0000013	\N	SOFA	"A small non coding RNA sequence, present in the cytoplasm." [SO:ke]	SO:0000013	"A small non coding RNA sequence, present in the cytoplasm." [SO:ke]	45009	\N	SOFA	sequence	0	SO	scRNA	scRNA
SO:0000655	SO:0000013	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000013	"A small non coding RNA sequence, present in the cytoplasm." [SO:ke]	489578	SOFA	SOFA	sequence	1	SO	ncRNA	scRNA
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000013	"A small non coding RNA sequence, present in the cytoplasm." [SO:ke]	1071988	SOFA	SOFA	sequence	2	SO	mature_transcript	scRNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000013	"A small non coding RNA sequence, present in the cytoplasm." [SO:ke]	1903005	SOFA	SOFA	sequence	3	SO	transcript	scRNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000013	"A small non coding RNA sequence, present in the cytoplasm." [SO:ke]	2927497	SOFA	SOFA	sequence	4	SO	gene_member_region	scRNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000013	"A small non coding RNA sequence, present in the cytoplasm." [SO:ke]	4000943	SOFA	SOFA	sequence	5	SO	biological_region	scRNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000013	"A small non coding RNA sequence, present in the cytoplasm." [SO:ke]	4965638	SOFA	SOFA	sequence	6	SO	region	scRNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000013	"A small non coding RNA sequence, present in the cytoplasm." [SO:ke]	5740686	SOFA	SOFA	sequence	7	SO	sequence_feature	scRNA
SO:0000014	\N	\N	"A sequence element characteristic of some RNA polymerase II promoters required for the correct positioning of the polymerase for the start of transcription. Overlaps the TSS. The mammalian consensus sequence is YYAN(T|A)YY; the Drosophila consensus sequence is TCA(G|T)t(T|C). In each the A is at position +1 with respect to the TSS. Functionally similar to the TATA box element." [PMID:12651739, PMID:16858867]	SO:0000014	"A sequence element characteristic of some RNA polymerase II promoters required for the correct positioning of the polymerase for the start of transcription. Overlaps the TSS. The mammalian consensus sequence is YYAN(T|A)YY; the Drosophila consensus sequence is TCA(G|T)t(T|C). In each the A is at position +1 with respect to the TSS. Functionally similar to the TATA box element." [PMID:12651739, PMID:16858867]	45010	\N	\N	sequence	0	SO	INR_motif	INR_motif
SO:0001660	SO:0000014	\N	"" []	SO:0000014	"A sequence element characteristic of some RNA polymerase II promoters required for the correct positioning of the polymerase for the start of transcription. Overlaps the TSS. The mammalian consensus sequence is YYAN(T|A)YY; the Drosophila consensus sequence is TCA(G|T)t(T|C). In each the A is at position +1 with respect to the TSS. Functionally similar to the TATA box element." [PMID:12651739, PMID:16858867]	489579	\N	\N	sequence	1	SO	core_promoter_element	INR_motif
SO:0001669	SO:0000014	\N	"The minimal portion of the promoter required to properly initiate transcription in RNA polymerase II transcribed genes." [PMID:16858867]	SO:0000014	"A sequence element characteristic of some RNA polymerase II promoters required for the correct positioning of the polymerase for the start of transcription. Overlaps the TSS. The mammalian consensus sequence is YYAN(T|A)YY; the Drosophila consensus sequence is TCA(G|T)t(T|C). In each the A is at position +1 with respect to the TSS. Functionally similar to the TATA box element." [PMID:12651739, PMID:16858867]	489580	\N	\N	sequence	1	SO	RNApol_II_core_promoter	INR_motif
SO:0001659	SO:0001660	\N	"" []	SO:0000014	"A sequence element characteristic of some RNA polymerase II promoters required for the correct positioning of the polymerase for the start of transcription. Overlaps the TSS. The mammalian consensus sequence is YYAN(T|A)YY; the Drosophila consensus sequence is TCA(G|T)t(T|C). In each the A is at position +1 with respect to the TSS. Functionally similar to the TATA box element." [PMID:12651739, PMID:16858867]	1071989	\N	\N	sequence	2	SO	promoter_element	INR_motif
SO:0000170	SO:0001669	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	SO:0000014	"A sequence element characteristic of some RNA polymerase II promoters required for the correct positioning of the polymerase for the start of transcription. Overlaps the TSS. The mammalian consensus sequence is YYAN(T|A)YY; the Drosophila consensus sequence is TCA(G|T)t(T|C). In each the A is at position +1 with respect to the TSS. Functionally similar to the TATA box element." [PMID:12651739, PMID:16858867]	1071990	\N	\N	sequence	2	SO	RNApol_II_promoter	INR_motif
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0000014	"A sequence element characteristic of some RNA polymerase II promoters required for the correct positioning of the polymerase for the start of transcription. Overlaps the TSS. The mammalian consensus sequence is YYAN(T|A)YY; the Drosophila consensus sequence is TCA(G|T)t(T|C). In each the A is at position +1 with respect to the TSS. Functionally similar to the TATA box element." [PMID:12651739, PMID:16858867]	1903006	\N	\N	sequence	3	SO	DNA_motif	INR_motif
SO:0001203	SO:0000170	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0000014	"A sequence element characteristic of some RNA polymerase II promoters required for the correct positioning of the polymerase for the start of transcription. Overlaps the TSS. The mammalian consensus sequence is YYAN(T|A)YY; the Drosophila consensus sequence is TCA(G|T)t(T|C). In each the A is at position +1 with respect to the TSS. Functionally similar to the TATA box element." [PMID:12651739, PMID:16858867]	1903007	\N	\N	sequence	3	SO	RNA_polymerase_promoter	INR_motif
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0000014	"A sequence element characteristic of some RNA polymerase II promoters required for the correct positioning of the polymerase for the start of transcription. Overlaps the TSS. The mammalian consensus sequence is YYAN(T|A)YY; the Drosophila consensus sequence is TCA(G|T)t(T|C). In each the A is at position +1 with respect to the TSS. Functionally similar to the TATA box element." [PMID:12651739, PMID:16858867]	2927498	\N	SOFA	sequence	4	SO	nucleotide_motif	INR_motif
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0000014	"A sequence element characteristic of some RNA polymerase II promoters required for the correct positioning of the polymerase for the start of transcription. Overlaps the TSS. The mammalian consensus sequence is YYAN(T|A)YY; the Drosophila consensus sequence is TCA(G|T)t(T|C). In each the A is at position +1 with respect to the TSS. Functionally similar to the TATA box element." [PMID:12651739, PMID:16858867]	2927499	\N	SOFA	sequence	4	SO	promoter	INR_motif
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0000014	"A sequence element characteristic of some RNA polymerase II promoters required for the correct positioning of the polymerase for the start of transcription. Overlaps the TSS. The mammalian consensus sequence is YYAN(T|A)YY; the Drosophila consensus sequence is TCA(G|T)t(T|C). In each the A is at position +1 with respect to the TSS. Functionally similar to the TATA box element." [PMID:12651739, PMID:16858867]	4000944	SOFA	SOFA	sequence	5	SO	sequence_motif	INR_motif
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0000014	"A sequence element characteristic of some RNA polymerase II promoters required for the correct positioning of the polymerase for the start of transcription. Overlaps the TSS. The mammalian consensus sequence is YYAN(T|A)YY; the Drosophila consensus sequence is TCA(G|T)t(T|C). In each the A is at position +1 with respect to the TSS. Functionally similar to the TATA box element." [PMID:12651739, PMID:16858867]	4000945	SOFA	SOFA	sequence	5	SO	transcriptional_cis_regulatory_region	INR_motif
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000014	"A sequence element characteristic of some RNA polymerase II promoters required for the correct positioning of the polymerase for the start of transcription. Overlaps the TSS. The mammalian consensus sequence is YYAN(T|A)YY; the Drosophila consensus sequence is TCA(G|T)t(T|C). In each the A is at position +1 with respect to the TSS. Functionally similar to the TATA box element." [PMID:12651739, PMID:16858867]	4965639	SOFA	SOFA	sequence	6	SO	biological_region	INR_motif
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000014	"A sequence element characteristic of some RNA polymerase II promoters required for the correct positioning of the polymerase for the start of transcription. Overlaps the TSS. The mammalian consensus sequence is YYAN(T|A)YY; the Drosophila consensus sequence is TCA(G|T)t(T|C). In each the A is at position +1 with respect to the TSS. Functionally similar to the TATA box element." [PMID:12651739, PMID:16858867]	4965640	SOFA	SOFA	sequence	6	SO	transcription_regulatory_region	INR_motif
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000014	"A sequence element characteristic of some RNA polymerase II promoters required for the correct positioning of the polymerase for the start of transcription. Overlaps the TSS. The mammalian consensus sequence is YYAN(T|A)YY; the Drosophila consensus sequence is TCA(G|T)t(T|C). In each the A is at position +1 with respect to the TSS. Functionally similar to the TATA box element." [PMID:12651739, PMID:16858867]	6948053	SOFA	SOFA	sequence	10	SO	region	INR_motif
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000014	"A sequence element characteristic of some RNA polymerase II promoters required for the correct positioning of the polymerase for the start of transcription. Overlaps the TSS. The mammalian consensus sequence is YYAN(T|A)YY; the Drosophila consensus sequence is TCA(G|T)t(T|C). In each the A is at position +1 with respect to the TSS. Functionally similar to the TATA box element." [PMID:12651739, PMID:16858867]	5740688	SOFA	SOFA	sequence	7	SO	regulatory_region	INR_motif
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000014	"A sequence element characteristic of some RNA polymerase II promoters required for the correct positioning of the polymerase for the start of transcription. Overlaps the TSS. The mammalian consensus sequence is YYAN(T|A)YY; the Drosophila consensus sequence is TCA(G|T)t(T|C). In each the A is at position +1 with respect to the TSS. Functionally similar to the TATA box element." [PMID:12651739, PMID:16858867]	7068338	SOFA	SOFA	sequence	11	SO	sequence_feature	INR_motif
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0000014	"A sequence element characteristic of some RNA polymerase II promoters required for the correct positioning of the polymerase for the start of transcription. Overlaps the TSS. The mammalian consensus sequence is YYAN(T|A)YY; the Drosophila consensus sequence is TCA(G|T)t(T|C). In each the A is at position +1 with respect to the TSS. Functionally similar to the TATA box element." [PMID:12651739, PMID:16858867]	6310723	SOFA	SOFA	sequence	8	SO	gene_member_region	INR_motif
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000014	"A sequence element characteristic of some RNA polymerase II promoters required for the correct positioning of the polymerase for the start of transcription. Overlaps the TSS. The mammalian consensus sequence is YYAN(T|A)YY; the Drosophila consensus sequence is TCA(G|T)t(T|C). In each the A is at position +1 with respect to the TSS. Functionally similar to the TATA box element." [PMID:12651739, PMID:16858867]	6699213	SOFA	SOFA	sequence	9	SO	biological_region	INR_motif
SO:0000015	\N	\N	"A sequence element characteristic of some RNA polymerase II promoters; Positioned from +28 to +32 with respect to the TSS (+1). Experimental results suggest that the DPE acts in conjunction with the INR_motif to provide a binding site for TFIID in the absence of a TATA box to mediate transcription of TATA-less promoters. Consensus sequence (A|G)G(A|T)(C|T)(G|A|C)." [PMID:12651739\\:12537576, PMID:16858867]	SO:0000015	"A sequence element characteristic of some RNA polymerase II promoters; Positioned from +28 to +32 with respect to the TSS (+1). Experimental results suggest that the DPE acts in conjunction with the INR_motif to provide a binding site for TFIID in the absence of a TATA box to mediate transcription of TATA-less promoters. Consensus sequence (A|G)G(A|T)(C|T)(G|A|C)." [PMID:12651739\\:12537576, PMID:16858867]	45011	\N	\N	sequence	0	SO	DPE_motif	DPE_motif
SO:0001660	SO:0000015	\N	"" []	SO:0000015	"A sequence element characteristic of some RNA polymerase II promoters; Positioned from +28 to +32 with respect to the TSS (+1). Experimental results suggest that the DPE acts in conjunction with the INR_motif to provide a binding site for TFIID in the absence of a TATA box to mediate transcription of TATA-less promoters. Consensus sequence (A|G)G(A|T)(C|T)(G|A|C)." [PMID:12651739\\:12537576, PMID:16858867]	489581	\N	\N	sequence	1	SO	core_promoter_element	DPE_motif
SO:0001669	SO:0000015	\N	"The minimal portion of the promoter required to properly initiate transcription in RNA polymerase II transcribed genes." [PMID:16858867]	SO:0000015	"A sequence element characteristic of some RNA polymerase II promoters; Positioned from +28 to +32 with respect to the TSS (+1). Experimental results suggest that the DPE acts in conjunction with the INR_motif to provide a binding site for TFIID in the absence of a TATA box to mediate transcription of TATA-less promoters. Consensus sequence (A|G)G(A|T)(C|T)(G|A|C)." [PMID:12651739\\:12537576, PMID:16858867]	489582	\N	\N	sequence	1	SO	RNApol_II_core_promoter	DPE_motif
SO:0001659	SO:0001660	\N	"" []	SO:0000015	"A sequence element characteristic of some RNA polymerase II promoters; Positioned from +28 to +32 with respect to the TSS (+1). Experimental results suggest that the DPE acts in conjunction with the INR_motif to provide a binding site for TFIID in the absence of a TATA box to mediate transcription of TATA-less promoters. Consensus sequence (A|G)G(A|T)(C|T)(G|A|C)." [PMID:12651739\\:12537576, PMID:16858867]	1071991	\N	\N	sequence	2	SO	promoter_element	DPE_motif
SO:0000170	SO:0001669	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	SO:0000015	"A sequence element characteristic of some RNA polymerase II promoters; Positioned from +28 to +32 with respect to the TSS (+1). Experimental results suggest that the DPE acts in conjunction with the INR_motif to provide a binding site for TFIID in the absence of a TATA box to mediate transcription of TATA-less promoters. Consensus sequence (A|G)G(A|T)(C|T)(G|A|C)." [PMID:12651739\\:12537576, PMID:16858867]	1071992	\N	\N	sequence	2	SO	RNApol_II_promoter	DPE_motif
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0000015	"A sequence element characteristic of some RNA polymerase II promoters; Positioned from +28 to +32 with respect to the TSS (+1). Experimental results suggest that the DPE acts in conjunction with the INR_motif to provide a binding site for TFIID in the absence of a TATA box to mediate transcription of TATA-less promoters. Consensus sequence (A|G)G(A|T)(C|T)(G|A|C)." [PMID:12651739\\:12537576, PMID:16858867]	1903008	\N	\N	sequence	3	SO	DNA_motif	DPE_motif
SO:0001203	SO:0000170	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0000015	"A sequence element characteristic of some RNA polymerase II promoters; Positioned from +28 to +32 with respect to the TSS (+1). Experimental results suggest that the DPE acts in conjunction with the INR_motif to provide a binding site for TFIID in the absence of a TATA box to mediate transcription of TATA-less promoters. Consensus sequence (A|G)G(A|T)(C|T)(G|A|C)." [PMID:12651739\\:12537576, PMID:16858867]	1903009	\N	\N	sequence	3	SO	RNA_polymerase_promoter	DPE_motif
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0000015	"A sequence element characteristic of some RNA polymerase II promoters; Positioned from +28 to +32 with respect to the TSS (+1). Experimental results suggest that the DPE acts in conjunction with the INR_motif to provide a binding site for TFIID in the absence of a TATA box to mediate transcription of TATA-less promoters. Consensus sequence (A|G)G(A|T)(C|T)(G|A|C)." [PMID:12651739\\:12537576, PMID:16858867]	2927500	\N	SOFA	sequence	4	SO	nucleotide_motif	DPE_motif
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0000015	"A sequence element characteristic of some RNA polymerase II promoters; Positioned from +28 to +32 with respect to the TSS (+1). Experimental results suggest that the DPE acts in conjunction with the INR_motif to provide a binding site for TFIID in the absence of a TATA box to mediate transcription of TATA-less promoters. Consensus sequence (A|G)G(A|T)(C|T)(G|A|C)." [PMID:12651739\\:12537576, PMID:16858867]	2927501	\N	SOFA	sequence	4	SO	promoter	DPE_motif
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0000015	"A sequence element characteristic of some RNA polymerase II promoters; Positioned from +28 to +32 with respect to the TSS (+1). Experimental results suggest that the DPE acts in conjunction with the INR_motif to provide a binding site for TFIID in the absence of a TATA box to mediate transcription of TATA-less promoters. Consensus sequence (A|G)G(A|T)(C|T)(G|A|C)." [PMID:12651739\\:12537576, PMID:16858867]	4000946	SOFA	SOFA	sequence	5	SO	sequence_motif	DPE_motif
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0000015	"A sequence element characteristic of some RNA polymerase II promoters; Positioned from +28 to +32 with respect to the TSS (+1). Experimental results suggest that the DPE acts in conjunction with the INR_motif to provide a binding site for TFIID in the absence of a TATA box to mediate transcription of TATA-less promoters. Consensus sequence (A|G)G(A|T)(C|T)(G|A|C)." [PMID:12651739\\:12537576, PMID:16858867]	4000947	SOFA	SOFA	sequence	5	SO	transcriptional_cis_regulatory_region	DPE_motif
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000015	"A sequence element characteristic of some RNA polymerase II promoters; Positioned from +28 to +32 with respect to the TSS (+1). Experimental results suggest that the DPE acts in conjunction with the INR_motif to provide a binding site for TFIID in the absence of a TATA box to mediate transcription of TATA-less promoters. Consensus sequence (A|G)G(A|T)(C|T)(G|A|C)." [PMID:12651739\\:12537576, PMID:16858867]	4965641	SOFA	SOFA	sequence	6	SO	biological_region	DPE_motif
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000015	"A sequence element characteristic of some RNA polymerase II promoters; Positioned from +28 to +32 with respect to the TSS (+1). Experimental results suggest that the DPE acts in conjunction with the INR_motif to provide a binding site for TFIID in the absence of a TATA box to mediate transcription of TATA-less promoters. Consensus sequence (A|G)G(A|T)(C|T)(G|A|C)." [PMID:12651739\\:12537576, PMID:16858867]	4965642	SOFA	SOFA	sequence	6	SO	transcription_regulatory_region	DPE_motif
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000015	"A sequence element characteristic of some RNA polymerase II promoters; Positioned from +28 to +32 with respect to the TSS (+1). Experimental results suggest that the DPE acts in conjunction with the INR_motif to provide a binding site for TFIID in the absence of a TATA box to mediate transcription of TATA-less promoters. Consensus sequence (A|G)G(A|T)(C|T)(G|A|C)." [PMID:12651739\\:12537576, PMID:16858867]	6948054	SOFA	SOFA	sequence	10	SO	region	DPE_motif
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000015	"A sequence element characteristic of some RNA polymerase II promoters; Positioned from +28 to +32 with respect to the TSS (+1). Experimental results suggest that the DPE acts in conjunction with the INR_motif to provide a binding site for TFIID in the absence of a TATA box to mediate transcription of TATA-less promoters. Consensus sequence (A|G)G(A|T)(C|T)(G|A|C)." [PMID:12651739\\:12537576, PMID:16858867]	5740690	SOFA	SOFA	sequence	7	SO	regulatory_region	DPE_motif
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000015	"A sequence element characteristic of some RNA polymerase II promoters; Positioned from +28 to +32 with respect to the TSS (+1). Experimental results suggest that the DPE acts in conjunction with the INR_motif to provide a binding site for TFIID in the absence of a TATA box to mediate transcription of TATA-less promoters. Consensus sequence (A|G)G(A|T)(C|T)(G|A|C)." [PMID:12651739\\:12537576, PMID:16858867]	7068339	SOFA	SOFA	sequence	11	SO	sequence_feature	DPE_motif
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0000015	"A sequence element characteristic of some RNA polymerase II promoters; Positioned from +28 to +32 with respect to the TSS (+1). Experimental results suggest that the DPE acts in conjunction with the INR_motif to provide a binding site for TFIID in the absence of a TATA box to mediate transcription of TATA-less promoters. Consensus sequence (A|G)G(A|T)(C|T)(G|A|C)." [PMID:12651739\\:12537576, PMID:16858867]	6310725	SOFA	SOFA	sequence	8	SO	gene_member_region	DPE_motif
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000015	"A sequence element characteristic of some RNA polymerase II promoters; Positioned from +28 to +32 with respect to the TSS (+1). Experimental results suggest that the DPE acts in conjunction with the INR_motif to provide a binding site for TFIID in the absence of a TATA box to mediate transcription of TATA-less promoters. Consensus sequence (A|G)G(A|T)(C|T)(G|A|C)." [PMID:12651739\\:12537576, PMID:16858867]	6699214	SOFA	SOFA	sequence	9	SO	biological_region	DPE_motif
SO:0000016	\N	\N	"A sequence element characteristic of some RNA polymerase II promoters, located immediately upstream of some TATA box elements at -37 to -32 with respect to the TSS (+1). Consensus sequence is (G|C)(G|C)(G|A)CGCC. Binds TFIIB." [PMID:12651739, PMID:16858867]	SO:0000016	"A sequence element characteristic of some RNA polymerase II promoters, located immediately upstream of some TATA box elements at -37 to -32 with respect to the TSS (+1). Consensus sequence is (G|C)(G|C)(G|A)CGCC. Binds TFIIB." [PMID:12651739, PMID:16858867]	45012	\N	\N	sequence	0	SO	BREu_motif	BREu_motif
SO:0001660	SO:0000016	\N	"" []	SO:0000016	"A sequence element characteristic of some RNA polymerase II promoters, located immediately upstream of some TATA box elements at -37 to -32 with respect to the TSS (+1). Consensus sequence is (G|C)(G|C)(G|A)CGCC. Binds TFIIB." [PMID:12651739, PMID:16858867]	489583	\N	\N	sequence	1	SO	core_promoter_element	BREu_motif
SO:0001669	SO:0000016	\N	"The minimal portion of the promoter required to properly initiate transcription in RNA polymerase II transcribed genes." [PMID:16858867]	SO:0000016	"A sequence element characteristic of some RNA polymerase II promoters, located immediately upstream of some TATA box elements at -37 to -32 with respect to the TSS (+1). Consensus sequence is (G|C)(G|C)(G|A)CGCC. Binds TFIIB." [PMID:12651739, PMID:16858867]	489584	\N	\N	sequence	1	SO	RNApol_II_core_promoter	BREu_motif
SO:0001659	SO:0001660	\N	"" []	SO:0000016	"A sequence element characteristic of some RNA polymerase II promoters, located immediately upstream of some TATA box elements at -37 to -32 with respect to the TSS (+1). Consensus sequence is (G|C)(G|C)(G|A)CGCC. Binds TFIIB." [PMID:12651739, PMID:16858867]	1071993	\N	\N	sequence	2	SO	promoter_element	BREu_motif
SO:0000170	SO:0001669	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	SO:0000016	"A sequence element characteristic of some RNA polymerase II promoters, located immediately upstream of some TATA box elements at -37 to -32 with respect to the TSS (+1). Consensus sequence is (G|C)(G|C)(G|A)CGCC. Binds TFIIB." [PMID:12651739, PMID:16858867]	1071994	\N	\N	sequence	2	SO	RNApol_II_promoter	BREu_motif
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0000016	"A sequence element characteristic of some RNA polymerase II promoters, located immediately upstream of some TATA box elements at -37 to -32 with respect to the TSS (+1). Consensus sequence is (G|C)(G|C)(G|A)CGCC. Binds TFIIB." [PMID:12651739, PMID:16858867]	1903010	\N	\N	sequence	3	SO	DNA_motif	BREu_motif
SO:0001203	SO:0000170	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0000016	"A sequence element characteristic of some RNA polymerase II promoters, located immediately upstream of some TATA box elements at -37 to -32 with respect to the TSS (+1). Consensus sequence is (G|C)(G|C)(G|A)CGCC. Binds TFIIB." [PMID:12651739, PMID:16858867]	1903011	\N	\N	sequence	3	SO	RNA_polymerase_promoter	BREu_motif
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0000016	"A sequence element characteristic of some RNA polymerase II promoters, located immediately upstream of some TATA box elements at -37 to -32 with respect to the TSS (+1). Consensus sequence is (G|C)(G|C)(G|A)CGCC. Binds TFIIB." [PMID:12651739, PMID:16858867]	2927502	\N	SOFA	sequence	4	SO	nucleotide_motif	BREu_motif
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0000016	"A sequence element characteristic of some RNA polymerase II promoters, located immediately upstream of some TATA box elements at -37 to -32 with respect to the TSS (+1). Consensus sequence is (G|C)(G|C)(G|A)CGCC. Binds TFIIB." [PMID:12651739, PMID:16858867]	2927503	\N	SOFA	sequence	4	SO	promoter	BREu_motif
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0000016	"A sequence element characteristic of some RNA polymerase II promoters, located immediately upstream of some TATA box elements at -37 to -32 with respect to the TSS (+1). Consensus sequence is (G|C)(G|C)(G|A)CGCC. Binds TFIIB." [PMID:12651739, PMID:16858867]	4000948	SOFA	SOFA	sequence	5	SO	sequence_motif	BREu_motif
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0000016	"A sequence element characteristic of some RNA polymerase II promoters, located immediately upstream of some TATA box elements at -37 to -32 with respect to the TSS (+1). Consensus sequence is (G|C)(G|C)(G|A)CGCC. Binds TFIIB." [PMID:12651739, PMID:16858867]	4000949	SOFA	SOFA	sequence	5	SO	transcriptional_cis_regulatory_region	BREu_motif
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000016	"A sequence element characteristic of some RNA polymerase II promoters, located immediately upstream of some TATA box elements at -37 to -32 with respect to the TSS (+1). Consensus sequence is (G|C)(G|C)(G|A)CGCC. Binds TFIIB." [PMID:12651739, PMID:16858867]	4965643	SOFA	SOFA	sequence	6	SO	biological_region	BREu_motif
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000016	"A sequence element characteristic of some RNA polymerase II promoters, located immediately upstream of some TATA box elements at -37 to -32 with respect to the TSS (+1). Consensus sequence is (G|C)(G|C)(G|A)CGCC. Binds TFIIB." [PMID:12651739, PMID:16858867]	4965644	SOFA	SOFA	sequence	6	SO	transcription_regulatory_region	BREu_motif
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000016	"A sequence element characteristic of some RNA polymerase II promoters, located immediately upstream of some TATA box elements at -37 to -32 with respect to the TSS (+1). Consensus sequence is (G|C)(G|C)(G|A)CGCC. Binds TFIIB." [PMID:12651739, PMID:16858867]	6948055	SOFA	SOFA	sequence	10	SO	region	BREu_motif
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000016	"A sequence element characteristic of some RNA polymerase II promoters, located immediately upstream of some TATA box elements at -37 to -32 with respect to the TSS (+1). Consensus sequence is (G|C)(G|C)(G|A)CGCC. Binds TFIIB." [PMID:12651739, PMID:16858867]	5740692	SOFA	SOFA	sequence	7	SO	regulatory_region	BREu_motif
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000016	"A sequence element characteristic of some RNA polymerase II promoters, located immediately upstream of some TATA box elements at -37 to -32 with respect to the TSS (+1). Consensus sequence is (G|C)(G|C)(G|A)CGCC. Binds TFIIB." [PMID:12651739, PMID:16858867]	7068340	SOFA	SOFA	sequence	11	SO	sequence_feature	BREu_motif
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0000016	"A sequence element characteristic of some RNA polymerase II promoters, located immediately upstream of some TATA box elements at -37 to -32 with respect to the TSS (+1). Consensus sequence is (G|C)(G|C)(G|A)CGCC. Binds TFIIB." [PMID:12651739, PMID:16858867]	6310727	SOFA	SOFA	sequence	8	SO	gene_member_region	BREu_motif
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000016	"A sequence element characteristic of some RNA polymerase II promoters, located immediately upstream of some TATA box elements at -37 to -32 with respect to the TSS (+1). Consensus sequence is (G|C)(G|C)(G|A)CGCC. Binds TFIIB." [PMID:12651739, PMID:16858867]	6699215	SOFA	SOFA	sequence	9	SO	biological_region	BREu_motif
SO:0000017	\N	\N	"A sequence element characteristic of the promoters of snRNA genes transcribed by RNA polymerase II or by RNA polymerase III. Located between -45 and -60 relative to the TSS. The human PSE_motif consensus sequence is TCACCNTNA(C|G)TNAAAAG(T|G)." [PMID:12651739]	SO:0000017	"A sequence element characteristic of the promoters of snRNA genes transcribed by RNA polymerase II or by RNA polymerase III. Located between -45 and -60 relative to the TSS. The human PSE_motif consensus sequence is TCACCNTNA(C|G)TNAAAAG(T|G)." [PMID:12651739]	45013	\N	\N	sequence	0	SO	PSE_motif	PSE_motif
SO:0000167	SO:0000017	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0000017	"A sequence element characteristic of the promoters of snRNA genes transcribed by RNA polymerase II or by RNA polymerase III. Located between -45 and -60 relative to the TSS. The human PSE_motif consensus sequence is TCACCNTNA(C|G)TNAAAAG(T|G)." [PMID:12651739]	489585	\N	SOFA	sequence	1	SO	promoter	PSE_motif
SO:0000713	SO:0000017	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0000017	"A sequence element characteristic of the promoters of snRNA genes transcribed by RNA polymerase II or by RNA polymerase III. Located between -45 and -60 relative to the TSS. The human PSE_motif consensus sequence is TCACCNTNA(C|G)TNAAAAG(T|G)." [PMID:12651739]	489586	\N	\N	sequence	1	SO	DNA_motif	PSE_motif
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0000017	"A sequence element characteristic of the promoters of snRNA genes transcribed by RNA polymerase II or by RNA polymerase III. Located between -45 and -60 relative to the TSS. The human PSE_motif consensus sequence is TCACCNTNA(C|G)TNAAAAG(T|G)." [PMID:12651739]	1071995	SOFA	SOFA	sequence	2	SO	transcriptional_cis_regulatory_region	PSE_motif
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0000017	"A sequence element characteristic of the promoters of snRNA genes transcribed by RNA polymerase II or by RNA polymerase III. Located between -45 and -60 relative to the TSS. The human PSE_motif consensus sequence is TCACCNTNA(C|G)TNAAAAG(T|G)." [PMID:12651739]	1071996	\N	SOFA	sequence	2	SO	nucleotide_motif	PSE_motif
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000017	"A sequence element characteristic of the promoters of snRNA genes transcribed by RNA polymerase II or by RNA polymerase III. Located between -45 and -60 relative to the TSS. The human PSE_motif consensus sequence is TCACCNTNA(C|G)TNAAAAG(T|G)." [PMID:12651739]	1903012	SOFA	SOFA	sequence	3	SO	transcription_regulatory_region	PSE_motif
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0000017	"A sequence element characteristic of the promoters of snRNA genes transcribed by RNA polymerase II or by RNA polymerase III. Located between -45 and -60 relative to the TSS. The human PSE_motif consensus sequence is TCACCNTNA(C|G)TNAAAAG(T|G)." [PMID:12651739]	1903013	SOFA	SOFA	sequence	3	SO	sequence_motif	PSE_motif
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000017	"A sequence element characteristic of the promoters of snRNA genes transcribed by RNA polymerase II or by RNA polymerase III. Located between -45 and -60 relative to the TSS. The human PSE_motif consensus sequence is TCACCNTNA(C|G)TNAAAAG(T|G)." [PMID:12651739]	2927504	SOFA	SOFA	sequence	4	SO	regulatory_region	PSE_motif
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000017	"A sequence element characteristic of the promoters of snRNA genes transcribed by RNA polymerase II or by RNA polymerase III. Located between -45 and -60 relative to the TSS. The human PSE_motif consensus sequence is TCACCNTNA(C|G)TNAAAAG(T|G)." [PMID:12651739]	2927505	SOFA	SOFA	sequence	4	SO	biological_region	PSE_motif
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0000017	"A sequence element characteristic of the promoters of snRNA genes transcribed by RNA polymerase II or by RNA polymerase III. Located between -45 and -60 relative to the TSS. The human PSE_motif consensus sequence is TCACCNTNA(C|G)TNAAAAG(T|G)." [PMID:12651739]	4000950	SOFA	SOFA	sequence	5	SO	gene_member_region	PSE_motif
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000017	"A sequence element characteristic of the promoters of snRNA genes transcribed by RNA polymerase II or by RNA polymerase III. Located between -45 and -60 relative to the TSS. The human PSE_motif consensus sequence is TCACCNTNA(C|G)TNAAAAG(T|G)." [PMID:12651739]	5740693	SOFA	SOFA	sequence	7	SO	region	PSE_motif
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000017	"A sequence element characteristic of the promoters of snRNA genes transcribed by RNA polymerase II or by RNA polymerase III. Located between -45 and -60 relative to the TSS. The human PSE_motif consensus sequence is TCACCNTNA(C|G)TNAAAAG(T|G)." [PMID:12651739]	4965645	SOFA	SOFA	sequence	6	SO	biological_region	PSE_motif
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000017	"A sequence element characteristic of the promoters of snRNA genes transcribed by RNA polymerase II or by RNA polymerase III. Located between -45 and -60 relative to the TSS. The human PSE_motif consensus sequence is TCACCNTNA(C|G)TNAAAAG(T|G)." [PMID:12651739]	5996356	SOFA	SOFA	sequence	8	SO	sequence_feature	PSE_motif
SO:0000018	\N	\N	"A group of loci that can be grouped in a linear order representing the different degrees of linkage among the genes concerned." [ISBN:038752046]	SO:0000018	"A group of loci that can be grouped in a linear order representing the different degrees of linkage among the genes concerned." [ISBN:038752046]	45014	\N	\N	sequence	0	SO	linkage_group	linkage_group
SO:0001411	SO:0000018	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000018	"A group of loci that can be grouped in a linear order representing the different degrees of linkage among the genes concerned." [ISBN:038752046]	489587	\N	SOFA	sequence	1	SO	biological_region	linkage_group
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000018	"A group of loci that can be grouped in a linear order representing the different degrees of linkage among the genes concerned." [ISBN:038752046]	1071997	SOFA	SOFA	sequence	2	SO	region	linkage_group
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000018	"A group of loci that can be grouped in a linear order representing the different degrees of linkage among the genes concerned." [ISBN:038752046]	1903014	SOFA	SOFA	sequence	3	SO	sequence_feature	linkage_group
SO:0000020	\N	\N	"A region of double stranded RNA where the bases do not conform to WC base pairing. The loop is closed on both sides by canonical base pairing. If the interruption to base pairing occurs on one strand only, it is known as a bulge." [SO:ke]	SO:0000020	"A region of double stranded RNA where the bases do not conform to WC base pairing. The loop is closed on both sides by canonical base pairing. If the interruption to base pairing occurs on one strand only, it is known as a bulge." [SO:ke]	45015	\N	\N	sequence	0	SO	RNA_internal_loop	RNA_internal_loop
SO:0000715	SO:0000020	\N	"A motif that is active in RNA sequence." [SO:ke]	SO:0000020	"A region of double stranded RNA where the bases do not conform to WC base pairing. The loop is closed on both sides by canonical base pairing. If the interruption to base pairing occurs on one strand only, it is known as a bulge." [SO:ke]	489588	\N	SOFA	sequence	1	SO	RNA_motif	RNA_internal_loop
SO:0000714	SO:0000715	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0000020	"A region of double stranded RNA where the bases do not conform to WC base pairing. The loop is closed on both sides by canonical base pairing. If the interruption to base pairing occurs on one strand only, it is known as a bulge." [SO:ke]	1071998	SOFA	SOFA	sequence	2	SO	nucleotide_motif	RNA_internal_loop
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0000020	"A region of double stranded RNA where the bases do not conform to WC base pairing. The loop is closed on both sides by canonical base pairing. If the interruption to base pairing occurs on one strand only, it is known as a bulge." [SO:ke]	1903015	SOFA	SOFA	sequence	3	SO	sequence_motif	RNA_internal_loop
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000020	"A region of double stranded RNA where the bases do not conform to WC base pairing. The loop is closed on both sides by canonical base pairing. If the interruption to base pairing occurs on one strand only, it is known as a bulge." [SO:ke]	2927506	SOFA	SOFA	sequence	4	SO	biological_region	RNA_internal_loop
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000020	"A region of double stranded RNA where the bases do not conform to WC base pairing. The loop is closed on both sides by canonical base pairing. If the interruption to base pairing occurs on one strand only, it is known as a bulge." [SO:ke]	4000952	SOFA	SOFA	sequence	5	SO	region	RNA_internal_loop
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000020	"A region of double stranded RNA where the bases do not conform to WC base pairing. The loop is closed on both sides by canonical base pairing. If the interruption to base pairing occurs on one strand only, it is known as a bulge." [SO:ke]	4965647	SOFA	SOFA	sequence	6	SO	sequence_feature	RNA_internal_loop
SO:0000021	\N	\N	"An internal RNA loop where one of the strands includes more bases than the corresponding region on the other strand." [SO:ke]	SO:0000021	"An internal RNA loop where one of the strands includes more bases than the corresponding region on the other strand." [SO:ke]	45016	\N	\N	sequence	0	SO	asymmetric_RNA_internal_loop	asymmetric_RNA_internal_loop
SO:0000020	SO:0000021	\N	"A region of double stranded RNA where the bases do not conform to WC base pairing. The loop is closed on both sides by canonical base pairing. If the interruption to base pairing occurs on one strand only, it is known as a bulge." [SO:ke]	SO:0000021	"An internal RNA loop where one of the strands includes more bases than the corresponding region on the other strand." [SO:ke]	489589	\N	\N	sequence	1	SO	RNA_internal_loop	asymmetric_RNA_internal_loop
SO:0000715	SO:0000020	\N	"A motif that is active in RNA sequence." [SO:ke]	SO:0000021	"An internal RNA loop where one of the strands includes more bases than the corresponding region on the other strand." [SO:ke]	1071999	\N	SOFA	sequence	2	SO	RNA_motif	asymmetric_RNA_internal_loop
SO:0000714	SO:0000715	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0000021	"An internal RNA loop where one of the strands includes more bases than the corresponding region on the other strand." [SO:ke]	1903016	SOFA	SOFA	sequence	3	SO	nucleotide_motif	asymmetric_RNA_internal_loop
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0000021	"An internal RNA loop where one of the strands includes more bases than the corresponding region on the other strand." [SO:ke]	2927507	SOFA	SOFA	sequence	4	SO	sequence_motif	asymmetric_RNA_internal_loop
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000021	"An internal RNA loop where one of the strands includes more bases than the corresponding region on the other strand." [SO:ke]	4000953	SOFA	SOFA	sequence	5	SO	biological_region	asymmetric_RNA_internal_loop
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000021	"An internal RNA loop where one of the strands includes more bases than the corresponding region on the other strand." [SO:ke]	4965648	SOFA	SOFA	sequence	6	SO	region	asymmetric_RNA_internal_loop
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000021	"An internal RNA loop where one of the strands includes more bases than the corresponding region on the other strand." [SO:ke]	5740694	SOFA	SOFA	sequence	7	SO	sequence_feature	asymmetric_RNA_internal_loop
SO:0000022	\N	\N	"A region forming a motif, composed of adenines, where the minor groove edges are inserted into the minor groove of another helix." [SO:ke]	SO:0000022	"A region forming a motif, composed of adenines, where the minor groove edges are inserted into the minor groove of another helix." [SO:ke]	45017	\N	\N	sequence	0	SO	A_minor_RNA_motif	A_minor_RNA_motif
SO:0000715	SO:0000022	\N	"A motif that is active in RNA sequence." [SO:ke]	SO:0000022	"A region forming a motif, composed of adenines, where the minor groove edges are inserted into the minor groove of another helix." [SO:ke]	489590	\N	SOFA	sequence	1	SO	RNA_motif	A_minor_RNA_motif
SO:0000714	SO:0000715	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0000022	"A region forming a motif, composed of adenines, where the minor groove edges are inserted into the minor groove of another helix." [SO:ke]	1072000	SOFA	SOFA	sequence	2	SO	nucleotide_motif	A_minor_RNA_motif
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0000022	"A region forming a motif, composed of adenines, where the minor groove edges are inserted into the minor groove of another helix." [SO:ke]	1903017	SOFA	SOFA	sequence	3	SO	sequence_motif	A_minor_RNA_motif
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000022	"A region forming a motif, composed of adenines, where the minor groove edges are inserted into the minor groove of another helix." [SO:ke]	2927508	SOFA	SOFA	sequence	4	SO	biological_region	A_minor_RNA_motif
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000022	"A region forming a motif, composed of adenines, where the minor groove edges are inserted into the minor groove of another helix." [SO:ke]	4000954	SOFA	SOFA	sequence	5	SO	region	A_minor_RNA_motif
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000022	"A region forming a motif, composed of adenines, where the minor groove edges are inserted into the minor groove of another helix." [SO:ke]	4965649	SOFA	SOFA	sequence	6	SO	sequence_feature	A_minor_RNA_motif
SO:0000023	\N	\N	"The kink turn (K-turn) is an RNA structural motif that creates a sharp (~120 degree) bend between two continuous helices." [SO:ke]	SO:0000023	"The kink turn (K-turn) is an RNA structural motif that creates a sharp (~120 degree) bend between two continuous helices." [SO:ke]	45018	\N	\N	sequence	0	SO	K_turn_RNA_motif	K_turn_RNA_motif
SO:0000021	SO:0000023	\N	"An internal RNA loop where one of the strands includes more bases than the corresponding region on the other strand." [SO:ke]	SO:0000023	"The kink turn (K-turn) is an RNA structural motif that creates a sharp (~120 degree) bend between two continuous helices." [SO:ke]	489591	\N	\N	sequence	1	SO	asymmetric_RNA_internal_loop	K_turn_RNA_motif
SO:0000020	SO:0000021	\N	"A region of double stranded RNA where the bases do not conform to WC base pairing. The loop is closed on both sides by canonical base pairing. If the interruption to base pairing occurs on one strand only, it is known as a bulge." [SO:ke]	SO:0000023	"The kink turn (K-turn) is an RNA structural motif that creates a sharp (~120 degree) bend between two continuous helices." [SO:ke]	1072001	\N	\N	sequence	2	SO	RNA_internal_loop	K_turn_RNA_motif
SO:0000715	SO:0000020	\N	"A motif that is active in RNA sequence." [SO:ke]	SO:0000023	"The kink turn (K-turn) is an RNA structural motif that creates a sharp (~120 degree) bend between two continuous helices." [SO:ke]	1903018	\N	SOFA	sequence	3	SO	RNA_motif	K_turn_RNA_motif
SO:0000714	SO:0000715	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0000023	"The kink turn (K-turn) is an RNA structural motif that creates a sharp (~120 degree) bend between two continuous helices." [SO:ke]	2927509	SOFA	SOFA	sequence	4	SO	nucleotide_motif	K_turn_RNA_motif
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0000023	"The kink turn (K-turn) is an RNA structural motif that creates a sharp (~120 degree) bend between two continuous helices." [SO:ke]	4000955	SOFA	SOFA	sequence	5	SO	sequence_motif	K_turn_RNA_motif
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000023	"The kink turn (K-turn) is an RNA structural motif that creates a sharp (~120 degree) bend between two continuous helices." [SO:ke]	4965650	SOFA	SOFA	sequence	6	SO	biological_region	K_turn_RNA_motif
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000023	"The kink turn (K-turn) is an RNA structural motif that creates a sharp (~120 degree) bend between two continuous helices." [SO:ke]	5740695	SOFA	SOFA	sequence	7	SO	region	K_turn_RNA_motif
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000023	"The kink turn (K-turn) is an RNA structural motif that creates a sharp (~120 degree) bend between two continuous helices." [SO:ke]	6310728	SOFA	SOFA	sequence	8	SO	sequence_feature	K_turn_RNA_motif
SO:0000024	\N	\N	"A loop in ribosomal RNA containing the sites of attack for ricin and sarcin." [http://www.ncbi.nlm.nih.gov/pubmed/7897662]	SO:0000024	"A loop in ribosomal RNA containing the sites of attack for ricin and sarcin." [http://www.ncbi.nlm.nih.gov/pubmed/7897662]	45019	\N	\N	sequence	0	SO	sarcin_like_RNA_motif	sarcin_like_RNA_motif
SO:0000021	SO:0000024	\N	"An internal RNA loop where one of the strands includes more bases than the corresponding region on the other strand." [SO:ke]	SO:0000024	"A loop in ribosomal RNA containing the sites of attack for ricin and sarcin." [http://www.ncbi.nlm.nih.gov/pubmed/7897662]	489592	\N	\N	sequence	1	SO	asymmetric_RNA_internal_loop	sarcin_like_RNA_motif
SO:0000020	SO:0000021	\N	"A region of double stranded RNA where the bases do not conform to WC base pairing. The loop is closed on both sides by canonical base pairing. If the interruption to base pairing occurs on one strand only, it is known as a bulge." [SO:ke]	SO:0000024	"A loop in ribosomal RNA containing the sites of attack for ricin and sarcin." [http://www.ncbi.nlm.nih.gov/pubmed/7897662]	1072002	\N	\N	sequence	2	SO	RNA_internal_loop	sarcin_like_RNA_motif
SO:0000715	SO:0000020	\N	"A motif that is active in RNA sequence." [SO:ke]	SO:0000024	"A loop in ribosomal RNA containing the sites of attack for ricin and sarcin." [http://www.ncbi.nlm.nih.gov/pubmed/7897662]	1903019	\N	SOFA	sequence	3	SO	RNA_motif	sarcin_like_RNA_motif
SO:0000714	SO:0000715	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0000024	"A loop in ribosomal RNA containing the sites of attack for ricin and sarcin." [http://www.ncbi.nlm.nih.gov/pubmed/7897662]	2927510	SOFA	SOFA	sequence	4	SO	nucleotide_motif	sarcin_like_RNA_motif
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0000024	"A loop in ribosomal RNA containing the sites of attack for ricin and sarcin." [http://www.ncbi.nlm.nih.gov/pubmed/7897662]	4000956	SOFA	SOFA	sequence	5	SO	sequence_motif	sarcin_like_RNA_motif
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000024	"A loop in ribosomal RNA containing the sites of attack for ricin and sarcin." [http://www.ncbi.nlm.nih.gov/pubmed/7897662]	4965651	SOFA	SOFA	sequence	6	SO	biological_region	sarcin_like_RNA_motif
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000024	"A loop in ribosomal RNA containing the sites of attack for ricin and sarcin." [http://www.ncbi.nlm.nih.gov/pubmed/7897662]	5740696	SOFA	SOFA	sequence	7	SO	region	sarcin_like_RNA_motif
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000024	"A loop in ribosomal RNA containing the sites of attack for ricin and sarcin." [http://www.ncbi.nlm.nih.gov/pubmed/7897662]	6310729	SOFA	SOFA	sequence	8	SO	sequence_feature	sarcin_like_RNA_motif
SO:0000025	\N	\N	"An internal RNA loop where the extent of the loop on both stands is the same size." [SO:ke]	SO:0000025	"An internal RNA loop where the extent of the loop on both stands is the same size." [SO:ke]	45020	\N	\N	sequence	0	SO	symmetric_RNA_internal_loop	symmetric_RNA_internal_loop
SO:0000020	SO:0000025	\N	"A region of double stranded RNA where the bases do not conform to WC base pairing. The loop is closed on both sides by canonical base pairing. If the interruption to base pairing occurs on one strand only, it is known as a bulge." [SO:ke]	SO:0000025	"An internal RNA loop where the extent of the loop on both stands is the same size." [SO:ke]	489593	\N	\N	sequence	1	SO	RNA_internal_loop	symmetric_RNA_internal_loop
SO:0000715	SO:0000020	\N	"A motif that is active in RNA sequence." [SO:ke]	SO:0000025	"An internal RNA loop where the extent of the loop on both stands is the same size." [SO:ke]	1072003	\N	SOFA	sequence	2	SO	RNA_motif	symmetric_RNA_internal_loop
SO:0000714	SO:0000715	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0000025	"An internal RNA loop where the extent of the loop on both stands is the same size." [SO:ke]	1903020	SOFA	SOFA	sequence	3	SO	nucleotide_motif	symmetric_RNA_internal_loop
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0000025	"An internal RNA loop where the extent of the loop on both stands is the same size." [SO:ke]	2927511	SOFA	SOFA	sequence	4	SO	sequence_motif	symmetric_RNA_internal_loop
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000025	"An internal RNA loop where the extent of the loop on both stands is the same size." [SO:ke]	4000957	SOFA	SOFA	sequence	5	SO	biological_region	symmetric_RNA_internal_loop
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000025	"An internal RNA loop where the extent of the loop on both stands is the same size." [SO:ke]	4965652	SOFA	SOFA	sequence	6	SO	region	symmetric_RNA_internal_loop
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000025	"An internal RNA loop where the extent of the loop on both stands is the same size." [SO:ke]	5740697	SOFA	SOFA	sequence	7	SO	sequence_feature	symmetric_RNA_internal_loop
SO:0000026	\N	\N	"" []	SO:0000026	"" []	45021	\N	\N	sequence	0	SO	RNA_junction_loop	RNA_junction_loop
SO:0000715	SO:0000026	\N	"A motif that is active in RNA sequence." [SO:ke]	SO:0000026	"" []	489594	\N	SOFA	sequence	1	SO	RNA_motif	RNA_junction_loop
SO:0000714	SO:0000715	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0000026	"" []	1072004	SOFA	SOFA	sequence	2	SO	nucleotide_motif	RNA_junction_loop
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0000026	"" []	1903021	SOFA	SOFA	sequence	3	SO	sequence_motif	RNA_junction_loop
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000026	"" []	2927512	SOFA	SOFA	sequence	4	SO	biological_region	RNA_junction_loop
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000026	"" []	4000958	SOFA	SOFA	sequence	5	SO	region	RNA_junction_loop
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000026	"" []	4965653	SOFA	SOFA	sequence	6	SO	sequence_feature	RNA_junction_loop
SO:0000027	\N	\N	"" []	SO:0000027	"" []	45022	\N	\N	sequence	0	SO	RNA_hook_turn	RNA_hook_turn
SO:0000026	SO:0000027	\N	"" []	SO:0000027	"" []	489595	\N	\N	sequence	1	SO	RNA_junction_loop	RNA_hook_turn
SO:0000715	SO:0000026	\N	"A motif that is active in RNA sequence." [SO:ke]	SO:0000027	"" []	1072005	\N	SOFA	sequence	2	SO	RNA_motif	RNA_hook_turn
SO:0000714	SO:0000715	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0000027	"" []	1903022	SOFA	SOFA	sequence	3	SO	nucleotide_motif	RNA_hook_turn
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0000027	"" []	2927513	SOFA	SOFA	sequence	4	SO	sequence_motif	RNA_hook_turn
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000027	"" []	4000959	SOFA	SOFA	sequence	5	SO	biological_region	RNA_hook_turn
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000027	"" []	4965654	SOFA	SOFA	sequence	6	SO	region	RNA_hook_turn
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000027	"" []	5740698	SOFA	SOFA	sequence	7	SO	sequence_feature	RNA_hook_turn
SO:0000028	\N	\N	"" []	SO:0000028	"" []	45023	\N	\N	sequence	0	SO	base_pair	base_pair
SO:0000002	SO:0000028	\N	"A folded sequence." [SO:ke]	SO:0000028	"" []	489596	\N	\N	sequence	1	SO	sequence_secondary_structure	base_pair
SO:0001411	SO:0000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000028	"" []	1072006	\N	SOFA	sequence	2	SO	biological_region	base_pair
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000028	"" []	1903023	SOFA	SOFA	sequence	3	SO	region	base_pair
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000028	"" []	2927514	SOFA	SOFA	sequence	4	SO	sequence_feature	base_pair
SO:0000029	\N	\N	"The canonical base pair, where two bases interact via WC edges, with glycosidic bonds oriented cis relative to the axis of orientation." [PMID:12177293]	SO:0000029	"The canonical base pair, where two bases interact via WC edges, with glycosidic bonds oriented cis relative to the axis of orientation." [PMID:12177293]	45024	\N	\N	sequence	0	SO	WC_base_pair	WC_base_pair
SO:0000028	SO:0000029	\N	"" []	SO:0000029	"The canonical base pair, where two bases interact via WC edges, with glycosidic bonds oriented cis relative to the axis of orientation." [PMID:12177293]	489597	\N	\N	sequence	1	SO	base_pair	WC_base_pair
SO:0000002	SO:0000028	\N	"A folded sequence." [SO:ke]	SO:0000029	"The canonical base pair, where two bases interact via WC edges, with glycosidic bonds oriented cis relative to the axis of orientation." [PMID:12177293]	1072007	\N	\N	sequence	2	SO	sequence_secondary_structure	WC_base_pair
SO:0001411	SO:0000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000029	"The canonical base pair, where two bases interact via WC edges, with glycosidic bonds oriented cis relative to the axis of orientation." [PMID:12177293]	1903024	\N	SOFA	sequence	3	SO	biological_region	WC_base_pair
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000029	"The canonical base pair, where two bases interact via WC edges, with glycosidic bonds oriented cis relative to the axis of orientation." [PMID:12177293]	2927515	SOFA	SOFA	sequence	4	SO	region	WC_base_pair
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000029	"The canonical base pair, where two bases interact via WC edges, with glycosidic bonds oriented cis relative to the axis of orientation." [PMID:12177293]	4000960	SOFA	SOFA	sequence	5	SO	sequence_feature	WC_base_pair
SO:0000030	\N	\N	"A type of non-canonical base-pairing." [PMID:12177293]	SO:0000030	"A type of non-canonical base-pairing." [PMID:12177293]	45025	\N	\N	sequence	0	SO	sugar_edge_base_pair	sugar_edge_base_pair
SO:0000028	SO:0000030	\N	"" []	SO:0000030	"A type of non-canonical base-pairing." [PMID:12177293]	489598	\N	\N	sequence	1	SO	base_pair	sugar_edge_base_pair
SO:0000002	SO:0000028	\N	"A folded sequence." [SO:ke]	SO:0000030	"A type of non-canonical base-pairing." [PMID:12177293]	1072008	\N	\N	sequence	2	SO	sequence_secondary_structure	sugar_edge_base_pair
SO:0001411	SO:0000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000030	"A type of non-canonical base-pairing." [PMID:12177293]	1903025	\N	SOFA	sequence	3	SO	biological_region	sugar_edge_base_pair
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000030	"A type of non-canonical base-pairing." [PMID:12177293]	2927516	SOFA	SOFA	sequence	4	SO	region	sugar_edge_base_pair
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000030	"A type of non-canonical base-pairing." [PMID:12177293]	4000961	SOFA	SOFA	sequence	5	SO	sequence_feature	sugar_edge_base_pair
SO:0000031	\N	\N	"DNA or RNA molecules that have been selected from random pools based on their ability to bind other molecules." [http://aptamer.icmb.utexas.edu]	SO:0000031	"DNA or RNA molecules that have been selected from random pools based on their ability to bind other molecules." [http://aptamer.icmb.utexas.edu]	45026	\N	\N	sequence	0	SO	aptamer	aptamer
SO:0000696	SO:0000031	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0000031	"DNA or RNA molecules that have been selected from random pools based on their ability to bind other molecules." [http://aptamer.icmb.utexas.edu]	489599	\N	SOFA	sequence	1	SO	oligo	aptamer
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0000031	"DNA or RNA molecules that have been selected from random pools based on their ability to bind other molecules." [http://aptamer.icmb.utexas.edu]	1072009	SOFA	SOFA	sequence	2	SO	reagent	aptamer
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000031	"DNA or RNA molecules that have been selected from random pools based on their ability to bind other molecules." [http://aptamer.icmb.utexas.edu]	1903026	SOFA	SOFA	sequence	3	SO	biomaterial_region	aptamer
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000031	"DNA or RNA molecules that have been selected from random pools based on their ability to bind other molecules." [http://aptamer.icmb.utexas.edu]	2927517	SOFA	SOFA	sequence	4	SO	region	aptamer
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000031	"DNA or RNA molecules that have been selected from random pools based on their ability to bind other molecules." [http://aptamer.icmb.utexas.edu]	4000962	SOFA	SOFA	sequence	5	SO	sequence_feature	aptamer
SO:0000032	\N	\N	"DNA molecules that have been selected from random pools based on their ability to bind other molecules." [http:aptamer.icmb.utexas.edu]	SO:0000032	"DNA molecules that have been selected from random pools based on their ability to bind other molecules." [http:aptamer.icmb.utexas.edu]	45027	\N	\N	sequence	0	SO	DNA_aptamer	DNA_aptamer
SO:0000031	SO:0000032	\N	"DNA or RNA molecules that have been selected from random pools based on their ability to bind other molecules." [http://aptamer.icmb.utexas.edu]	SO:0000032	"DNA molecules that have been selected from random pools based on their ability to bind other molecules." [http:aptamer.icmb.utexas.edu]	489600	\N	\N	sequence	1	SO	aptamer	DNA_aptamer
SO:0000696	SO:0000031	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0000032	"DNA molecules that have been selected from random pools based on their ability to bind other molecules." [http:aptamer.icmb.utexas.edu]	1072010	\N	SOFA	sequence	2	SO	oligo	DNA_aptamer
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0000032	"DNA molecules that have been selected from random pools based on their ability to bind other molecules." [http:aptamer.icmb.utexas.edu]	1903027	SOFA	SOFA	sequence	3	SO	reagent	DNA_aptamer
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000032	"DNA molecules that have been selected from random pools based on their ability to bind other molecules." [http:aptamer.icmb.utexas.edu]	2927518	SOFA	SOFA	sequence	4	SO	biomaterial_region	DNA_aptamer
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000032	"DNA molecules that have been selected from random pools based on their ability to bind other molecules." [http:aptamer.icmb.utexas.edu]	4000963	SOFA	SOFA	sequence	5	SO	region	DNA_aptamer
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000032	"DNA molecules that have been selected from random pools based on their ability to bind other molecules." [http:aptamer.icmb.utexas.edu]	4965655	SOFA	SOFA	sequence	6	SO	sequence_feature	DNA_aptamer
SO:0000033	\N	\N	"RNA molecules that have been selected from random pools based on their ability to bind other molecules." [http://aptamer.icmb.utexas.edu]	SO:0000033	"RNA molecules that have been selected from random pools based on their ability to bind other molecules." [http://aptamer.icmb.utexas.edu]	45028	\N	\N	sequence	0	SO	RNA_aptamer	RNA_aptamer
SO:0000031	SO:0000033	\N	"DNA or RNA molecules that have been selected from random pools based on their ability to bind other molecules." [http://aptamer.icmb.utexas.edu]	SO:0000033	"RNA molecules that have been selected from random pools based on their ability to bind other molecules." [http://aptamer.icmb.utexas.edu]	489601	\N	\N	sequence	1	SO	aptamer	RNA_aptamer
SO:0000696	SO:0000031	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0000033	"RNA molecules that have been selected from random pools based on their ability to bind other molecules." [http://aptamer.icmb.utexas.edu]	1072011	\N	SOFA	sequence	2	SO	oligo	RNA_aptamer
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0000033	"RNA molecules that have been selected from random pools based on their ability to bind other molecules." [http://aptamer.icmb.utexas.edu]	1903028	SOFA	SOFA	sequence	3	SO	reagent	RNA_aptamer
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000033	"RNA molecules that have been selected from random pools based on their ability to bind other molecules." [http://aptamer.icmb.utexas.edu]	2927519	SOFA	SOFA	sequence	4	SO	biomaterial_region	RNA_aptamer
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000033	"RNA molecules that have been selected from random pools based on their ability to bind other molecules." [http://aptamer.icmb.utexas.edu]	4000964	SOFA	SOFA	sequence	5	SO	region	RNA_aptamer
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000033	"RNA molecules that have been selected from random pools based on their ability to bind other molecules." [http://aptamer.icmb.utexas.edu]	4965656	SOFA	SOFA	sequence	6	SO	sequence_feature	RNA_aptamer
SO:0000034	\N	\N	"Morpholino oligos are synthesized from four different Morpholino subunits, each of which contains one of the four genetic bases (A, C, G, T) linked to a 6-membered morpholine ring. Eighteen to 25 subunits of these four subunit types are joined in a specific order by non-ionic phosphorodiamidate intersubunit linkages to give a Morpholino." [http://www.gene-tools.com/]	SO:0000034	"Morpholino oligos are synthesized from four different Morpholino subunits, each of which contains one of the four genetic bases (A, C, G, T) linked to a 6-membered morpholine ring. Eighteen to 25 subunits of these four subunit types are joined in a specific order by non-ionic phosphorodiamidate intersubunit linkages to give a Morpholino." [http://www.gene-tools.com/]	45029	\N	\N	sequence	0	SO	morpholino_oligo	morpholino_oligo
SO:0001247	SO:0000034	\N	"An oligo composed of synthetic nucleotides." [SO:ke]	SO:0000034	"Morpholino oligos are synthesized from four different Morpholino subunits, each of which contains one of the four genetic bases (A, C, G, T) linked to a 6-membered morpholine ring. Eighteen to 25 subunits of these four subunit types are joined in a specific order by non-ionic phosphorodiamidate intersubunit linkages to give a Morpholino." [http://www.gene-tools.com/]	489602	\N	\N	sequence	1	SO	synthetic_oligo	morpholino_oligo
SO:0000696	SO:0001247	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0000034	"Morpholino oligos are synthesized from four different Morpholino subunits, each of which contains one of the four genetic bases (A, C, G, T) linked to a 6-membered morpholine ring. Eighteen to 25 subunits of these four subunit types are joined in a specific order by non-ionic phosphorodiamidate intersubunit linkages to give a Morpholino." [http://www.gene-tools.com/]	1072012	\N	SOFA	sequence	2	SO	oligo	morpholino_oligo
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0000034	"Morpholino oligos are synthesized from four different Morpholino subunits, each of which contains one of the four genetic bases (A, C, G, T) linked to a 6-membered morpholine ring. Eighteen to 25 subunits of these four subunit types are joined in a specific order by non-ionic phosphorodiamidate intersubunit linkages to give a Morpholino." [http://www.gene-tools.com/]	1903029	SOFA	SOFA	sequence	3	SO	reagent	morpholino_oligo
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000034	"Morpholino oligos are synthesized from four different Morpholino subunits, each of which contains one of the four genetic bases (A, C, G, T) linked to a 6-membered morpholine ring. Eighteen to 25 subunits of these four subunit types are joined in a specific order by non-ionic phosphorodiamidate intersubunit linkages to give a Morpholino." [http://www.gene-tools.com/]	2927520	SOFA	SOFA	sequence	4	SO	biomaterial_region	morpholino_oligo
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000034	"Morpholino oligos are synthesized from four different Morpholino subunits, each of which contains one of the four genetic bases (A, C, G, T) linked to a 6-membered morpholine ring. Eighteen to 25 subunits of these four subunit types are joined in a specific order by non-ionic phosphorodiamidate intersubunit linkages to give a Morpholino." [http://www.gene-tools.com/]	4000965	SOFA	SOFA	sequence	5	SO	region	morpholino_oligo
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000034	"Morpholino oligos are synthesized from four different Morpholino subunits, each of which contains one of the four genetic bases (A, C, G, T) linked to a 6-membered morpholine ring. Eighteen to 25 subunits of these four subunit types are joined in a specific order by non-ionic phosphorodiamidate intersubunit linkages to give a Morpholino." [http://www.gene-tools.com/]	4965657	SOFA	SOFA	sequence	6	SO	sequence_feature	morpholino_oligo
SO:0000035	\N	\N	"A riboswitch is a part of an mRNA that can act as a direct sensor of small molecules to control their own expression. A riboswitch is a cis element in the 5' end of an mRNA, that acts as a direct sensor of metabolites." [PMID:2820954]	SO:0000035	"A riboswitch is a part of an mRNA that can act as a direct sensor of small molecules to control their own expression. A riboswitch is a cis element in the 5' end of an mRNA, that acts as a direct sensor of metabolites." [PMID:2820954]	45030	\N	\N	sequence	0	SO	riboswitch	riboswitch
SO:0000234	SO:0000035	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000035	"A riboswitch is a part of an mRNA that can act as a direct sensor of small molecules to control their own expression. A riboswitch is a cis element in the 5' end of an mRNA, that acts as a direct sensor of metabolites." [PMID:2820954]	489603	\N	SOFA	sequence	1	SO	mRNA	riboswitch
SO:0000836	SO:0000035	\N	"A region of an mRNA." [SO:cb]	SO:0000035	"A riboswitch is a part of an mRNA that can act as a direct sensor of small molecules to control their own expression. A riboswitch is a cis element in the 5' end of an mRNA, that acts as a direct sensor of metabolites." [PMID:2820954]	489604	\N	SOFA	sequence	1	SO	mRNA_region	riboswitch
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000035	"A riboswitch is a part of an mRNA that can act as a direct sensor of small molecules to control their own expression. A riboswitch is a cis element in the 5' end of an mRNA, that acts as a direct sensor of metabolites." [PMID:2820954]	1903031	SOFA	SOFA	sequence	3	SO	mature_transcript	riboswitch
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000035	"A riboswitch is a part of an mRNA that can act as a direct sensor of small molecules to control their own expression. A riboswitch is a cis element in the 5' end of an mRNA, that acts as a direct sensor of metabolites." [PMID:2820954]	1072014	SOFA	SOFA	sequence	2	SO	mRNA	riboswitch
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:0000035	"A riboswitch is a part of an mRNA that can act as a direct sensor of small molecules to control their own expression. A riboswitch is a cis element in the 5' end of an mRNA, that acts as a direct sensor of metabolites." [PMID:2820954]	1072015	SOFA	SOFA	sequence	2	SO	mature_transcript_region	riboswitch
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000035	"A riboswitch is a part of an mRNA that can act as a direct sensor of small molecules to control their own expression. A riboswitch is a cis element in the 5' end of an mRNA, that acts as a direct sensor of metabolites." [PMID:2820954]	2018213	SOFA	SOFA	sequence	4	SO	transcript	riboswitch
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0000035	"A riboswitch is a part of an mRNA that can act as a direct sensor of small molecules to control their own expression. A riboswitch is a cis element in the 5' end of an mRNA, that acts as a direct sensor of metabolites." [PMID:2820954]	1903032	SOFA	SOFA	sequence	3	SO	transcript_region	riboswitch
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000035	"A riboswitch is a part of an mRNA that can act as a direct sensor of small molecules to control their own expression. A riboswitch is a cis element in the 5' end of an mRNA, that acts as a direct sensor of metabolites." [PMID:2820954]	3173855	SOFA	SOFA	sequence	5	SO	gene_member_region	riboswitch
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000035	"A riboswitch is a part of an mRNA that can act as a direct sensor of small molecules to control their own expression. A riboswitch is a cis element in the 5' end of an mRNA, that acts as a direct sensor of metabolites." [PMID:2820954]	2927522	SOFA	SOFA	sequence	4	SO	transcript	riboswitch
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000035	"A riboswitch is a part of an mRNA that can act as a direct sensor of small molecules to control their own expression. A riboswitch is a cis element in the 5' end of an mRNA, that acts as a direct sensor of metabolites." [PMID:2820954]	2927523	SOFA	SOFA	sequence	4	SO	biological_region	riboswitch
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000035	"A riboswitch is a part of an mRNA that can act as a direct sensor of small molecules to control their own expression. A riboswitch is a cis element in the 5' end of an mRNA, that acts as a direct sensor of metabolites." [PMID:2820954]	4385699	SOFA	SOFA	sequence	6	SO	biological_region	riboswitch
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000035	"A riboswitch is a part of an mRNA that can act as a direct sensor of small molecules to control their own expression. A riboswitch is a cis element in the 5' end of an mRNA, that acts as a direct sensor of metabolites." [PMID:2820954]	5407366	SOFA	SOFA	sequence	7	SO	region	riboswitch
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000035	"A riboswitch is a part of an mRNA that can act as a direct sensor of small molecules to control their own expression. A riboswitch is a cis element in the 5' end of an mRNA, that acts as a direct sensor of metabolites." [PMID:2820954]	5996357	SOFA	SOFA	sequence	8	SO	sequence_feature	riboswitch
SO:0000036	\N	\N	"A DNA region that is required for the binding of chromatin to the nuclear matrix." [SO:ma]	SO:0000036	"A DNA region that is required for the binding of chromatin to the nuclear matrix." [SO:ma]	45031	\N	\N	sequence	0	SO	matrix_attachment_site	matrix_attachment_site
SO:0000626	SO:0000036	\N	"" []	SO:0000036	"A DNA region that is required for the binding of chromatin to the nuclear matrix." [SO:ma]	489605	\N	\N	sequence	1	SO	chromosomal_regulatory_element	matrix_attachment_site
SO:0000830	SO:0000626	\N	"A region of a chromosome." [SO:ke]	SO:0000036	"A DNA region that is required for the binding of chromatin to the nuclear matrix." [SO:ma]	1072016	\N	SOFA	sequence	2	SO	chromosome_part	matrix_attachment_site
SO:0000340	SO:0000830	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000036	"A DNA region that is required for the binding of chromatin to the nuclear matrix." [SO:ma]	1903033	SOFA	SOFA	sequence	3	SO	chromosome	matrix_attachment_site
SO:0001411	SO:0000830	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000036	"A DNA region that is required for the binding of chromatin to the nuclear matrix." [SO:ma]	1903034	SOFA	SOFA	sequence	3	SO	biological_region	matrix_attachment_site
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000036	"A DNA region that is required for the binding of chromatin to the nuclear matrix." [SO:ma]	2927524	SOFA	SOFA	sequence	4	SO	replicon	matrix_attachment_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000036	"A DNA region that is required for the binding of chromatin to the nuclear matrix." [SO:ma]	4965660	SOFA	SOFA	sequence	6	SO	region	matrix_attachment_site
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000036	"A DNA region that is required for the binding of chromatin to the nuclear matrix." [SO:ma]	4000968	SOFA	SOFA	sequence	5	SO	biological_region	matrix_attachment_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000036	"A DNA region that is required for the binding of chromatin to the nuclear matrix." [SO:ma]	5180657	SOFA	SOFA	sequence	7	SO	sequence_feature	matrix_attachment_site
SO:0000037	\N	\N	"A DNA region that includes DNAse hypersensitive sites located 5' to a gene that confers the high-level, position-independent, and copy number-dependent expression to that gene." [SO:ma]	SO:0000037	"A DNA region that includes DNAse hypersensitive sites located 5' to a gene that confers the high-level, position-independent, and copy number-dependent expression to that gene." [SO:ma]	45032	\N	\N	sequence	0	SO	locus_control_region	locus_control_region
SO:0000727	SO:0000037	\N	"A regulatory region where transcription factor binding sites clustered to regulate various aspects of transcription activities. (CRMs can be located a few kb to hundred kb upstream of the basal promoter, in the coding sequence, within introns, or in the downstream 3'UTR sequences, as well as on different chromosome). A single gene can be regulated by multiple CRMs to give precise control of its spatial and temporal expression. CRMs function as nodes in large, intertwined regulatory network." [PMID:19660565, SO:SG]	SO:0000037	"A DNA region that includes DNAse hypersensitive sites located 5' to a gene that confers the high-level, position-independent, and copy number-dependent expression to that gene." [SO:ma]	489606	\N	SOFA	sequence	1	SO	CRM	locus_control_region
SO:0001055	SO:0000727	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0000037	"A DNA region that includes DNAse hypersensitive sites located 5' to a gene that confers the high-level, position-independent, and copy number-dependent expression to that gene." [SO:ma]	1072017	SOFA	SOFA	sequence	2	SO	transcriptional_cis_regulatory_region	locus_control_region
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000037	"A DNA region that includes DNAse hypersensitive sites located 5' to a gene that confers the high-level, position-independent, and copy number-dependent expression to that gene." [SO:ma]	1903035	SOFA	SOFA	sequence	3	SO	transcription_regulatory_region	locus_control_region
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000037	"A DNA region that includes DNAse hypersensitive sites located 5' to a gene that confers the high-level, position-independent, and copy number-dependent expression to that gene." [SO:ma]	2927526	SOFA	SOFA	sequence	4	SO	regulatory_region	locus_control_region
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0000037	"A DNA region that includes DNAse hypersensitive sites located 5' to a gene that confers the high-level, position-independent, and copy number-dependent expression to that gene." [SO:ma]	4000970	SOFA	SOFA	sequence	5	SO	gene_member_region	locus_control_region
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000037	"A DNA region that includes DNAse hypersensitive sites located 5' to a gene that confers the high-level, position-independent, and copy number-dependent expression to that gene." [SO:ma]	4965661	SOFA	SOFA	sequence	6	SO	biological_region	locus_control_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000037	"A DNA region that includes DNAse hypersensitive sites located 5' to a gene that confers the high-level, position-independent, and copy number-dependent expression to that gene." [SO:ma]	5740699	SOFA	SOFA	sequence	7	SO	region	locus_control_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000037	"A DNA region that includes DNAse hypersensitive sites located 5' to a gene that confers the high-level, position-independent, and copy number-dependent expression to that gene." [SO:ma]	6310730	SOFA	SOFA	sequence	8	SO	sequence_feature	locus_control_region
SO:0000039	\N	SOFA	"A part of a match, for example an hsp from blast is a match_part." [SO:ke]	SO:0000039	"A part of a match, for example an hsp from blast is a match_part." [SO:ke]	45033	\N	SOFA	sequence	0	SO	match_part	match_part
SO:0000343	SO:0000039	SOFA	"A region of sequence, aligned to another sequence with some statistical significance, using an algorithm such as BLAST or SIM4." [SO:ke]	SO:0000039	"A part of a match, for example an hsp from blast is a match_part." [SO:ke]	489607	SOFA	SOFA	sequence	1	SO	match	match_part
SO:0001410	SO:0000039	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000039	"A part of a match, for example an hsp from blast is a match_part." [SO:ke]	489608	SOFA	SOFA	sequence	1	SO	experimental_feature	match_part
SO:0001410	SO:0000343	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000039	"A part of a match, for example an hsp from blast is a match_part." [SO:ke]	1072018	SOFA	SOFA	sequence	2	SO	experimental_feature	match_part
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000039	"A part of a match, for example an hsp from blast is a match_part." [SO:ke]	1903036	SOFA	SOFA	sequence	3	SO	region	match_part
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000039	"A part of a match, for example an hsp from blast is a match_part." [SO:ke]	2018214	SOFA	SOFA	sequence	4	SO	sequence_feature	match_part
SO:0000040	\N	\N	"A clone of a DNA region of a genome." [SO:ma]	SO:0000040	"A clone of a DNA region of a genome." [SO:ma]	45034	\N	\N	sequence	0	SO	genomic_clone	genomic_clone
SO:0000151	SO:0000040	\N	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0000040	"A clone of a DNA region of a genome." [SO:ma]	489609	\N	SOFA	sequence	1	SO	clone	genomic_clone
SO:0000695	SO:0000151	\N	"A sequence used in experiment." [SO:ke]	SO:0000040	"A clone of a DNA region of a genome." [SO:ma]	1072020	SOFA	SOFA	sequence	2	SO	reagent	genomic_clone
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000040	"A clone of a DNA region of a genome." [SO:ma]	1903038	SOFA	SOFA	sequence	3	SO	biomaterial_region	genomic_clone
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000040	"A clone of a DNA region of a genome." [SO:ma]	2927527	SOFA	SOFA	sequence	4	SO	region	genomic_clone
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000040	"A clone of a DNA region of a genome." [SO:ma]	4000971	SOFA	SOFA	sequence	5	SO	sequence_feature	genomic_clone
SO:0000043	\N	\N	"A pseudogene created via retrotranposition of the mRNA of a functional protein-coding parent gene followed by accumulation of deleterious mutations lacking introns and promoters, often including a polyA tail." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0000043	"A pseudogene created via retrotranposition of the mRNA of a functional protein-coding parent gene followed by accumulation of deleterious mutations lacking introns and promoters, often including a polyA tail." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	45035	\N	\N	sequence	0	SO	processed_pseudogene	processed_pseudogene
SO:0000336	SO:0000043	\N	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	SO:0000043	"A pseudogene created via retrotranposition of the mRNA of a functional protein-coding parent gene followed by accumulation of deleterious mutations lacking introns and promoters, often including a polyA tail." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	489610	\N	SOFA	sequence	1	SO	pseudogene	processed_pseudogene
SO:0001411	SO:0000336	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000043	"A pseudogene created via retrotranposition of the mRNA of a functional protein-coding parent gene followed by accumulation of deleterious mutations lacking introns and promoters, often including a polyA tail." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1072021	SOFA	SOFA	sequence	2	SO	biological_region	processed_pseudogene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000043	"A pseudogene created via retrotranposition of the mRNA of a functional protein-coding parent gene followed by accumulation of deleterious mutations lacking introns and promoters, often including a polyA tail." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1903039	SOFA	SOFA	sequence	3	SO	region	processed_pseudogene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000043	"A pseudogene created via retrotranposition of the mRNA of a functional protein-coding parent gene followed by accumulation of deleterious mutations lacking introns and promoters, often including a polyA tail." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	2927528	SOFA	SOFA	sequence	4	SO	sequence_feature	processed_pseudogene
SO:0000044	\N	\N	"A pseudogene caused by unequal crossing over at recombination." [SO:ke]	SO:0000044	"A pseudogene caused by unequal crossing over at recombination." [SO:ke]	45036	\N	\N	sequence	0	SO	pseudogene_by_unequal_crossing_over	pseudogene_by_unequal_crossing_over
SO:0001760	SO:0000044	\N	"A pseudogene that arose from a means other than retrotransposition. A pseudogene created via genomic duplication of a functional protein-coding parent gene followed by accumulation of deleterious mutations." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, SO:ke]	SO:0000044	"A pseudogene caused by unequal crossing over at recombination." [SO:ke]	489611	\N	\N	sequence	1	SO	non_processed_pseudogene	pseudogene_by_unequal_crossing_over
SO:0000336	SO:0001760	\N	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	SO:0000044	"A pseudogene caused by unequal crossing over at recombination." [SO:ke]	1072022	\N	SOFA	sequence	2	SO	pseudogene	pseudogene_by_unequal_crossing_over
SO:0001411	SO:0000336	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000044	"A pseudogene caused by unequal crossing over at recombination." [SO:ke]	1903040	SOFA	SOFA	sequence	3	SO	biological_region	pseudogene_by_unequal_crossing_over
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000044	"A pseudogene caused by unequal crossing over at recombination." [SO:ke]	2927529	SOFA	SOFA	sequence	4	SO	region	pseudogene_by_unequal_crossing_over
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000044	"A pseudogene caused by unequal crossing over at recombination." [SO:ke]	4000972	SOFA	SOFA	sequence	5	SO	sequence_feature	pseudogene_by_unequal_crossing_over
SO:0000051	\N	\N	"A DNA sequence used experimentally to detect the presence or absence of a complementary nucleic acid." [SO:ma]	SO:0000051	"A DNA sequence used experimentally to detect the presence or absence of a complementary nucleic acid." [SO:ma]	45037	\N	\N	sequence	0	SO	probe	probe
SO:0000696	SO:0000051	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0000051	"A DNA sequence used experimentally to detect the presence or absence of a complementary nucleic acid." [SO:ma]	489612	\N	SOFA	sequence	1	SO	oligo	probe
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0000051	"A DNA sequence used experimentally to detect the presence or absence of a complementary nucleic acid." [SO:ma]	1072023	SOFA	SOFA	sequence	2	SO	reagent	probe
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000051	"A DNA sequence used experimentally to detect the presence or absence of a complementary nucleic acid." [SO:ma]	1903041	SOFA	SOFA	sequence	3	SO	biomaterial_region	probe
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000051	"A DNA sequence used experimentally to detect the presence or absence of a complementary nucleic acid." [SO:ma]	2927530	SOFA	SOFA	sequence	4	SO	region	probe
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000051	"A DNA sequence used experimentally to detect the presence or absence of a complementary nucleic acid." [SO:ma]	4000973	SOFA	SOFA	sequence	5	SO	sequence_feature	probe
SO:0000054	\N	\N	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number." [SO:ke]	SO:0000054	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number." [SO:ke]	45038	\N	\N	sequence	0	SO	aneuploid	aneuploid
SO:1000182	SO:0000054	\N	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number." [SO:ke]	SO:0000054	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number." [SO:ke]	489613	\N	\N	sequence	1	SO	chromosome_number_variation	aneuploid
SO:0000240	SO:1000182	\N	"" []	SO:0000054	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number." [SO:ke]	1072024	\N	\N	sequence	2	SO	chromosome_variation	aneuploid
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0000054	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number." [SO:ke]	1903042	\N	\N	sequence	3	SO	variant_collection	aneuploid
SO:0001524	SO:0000240	\N	"" []	SO:0000054	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number." [SO:ke]	1903043	\N	\N	sequence	3	SO	chromosomally_aberrant_genome	aneuploid
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000054	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number." [SO:ke]	2927531	\N	\N	sequence	4	SO	sequence_collection	aneuploid
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0000054	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number." [SO:ke]	2927532	\N	\N	sequence	4	SO	variant_genome	aneuploid
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0000054	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number." [SO:ke]	4000974	\N	\N	sequence	5	SO	genome	aneuploid
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000054	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number." [SO:ke]	4965662	\N	\N	sequence	6	SO	sequence_collection	aneuploid
SO:0000055	\N	\N	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number as extra chromosomes are present." [SO:ke]	SO:0000055	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number as extra chromosomes are present." [SO:ke]	45039	\N	\N	sequence	0	SO	hyperploid	hyperploid
SO:0000054	SO:0000055	\N	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number." [SO:ke]	SO:0000055	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number as extra chromosomes are present." [SO:ke]	489614	\N	\N	sequence	1	SO	aneuploid	hyperploid
SO:1000182	SO:0000054	\N	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number." [SO:ke]	SO:0000055	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number as extra chromosomes are present." [SO:ke]	1072025	\N	\N	sequence	2	SO	chromosome_number_variation	hyperploid
SO:0000240	SO:1000182	\N	"" []	SO:0000055	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number as extra chromosomes are present." [SO:ke]	1903044	\N	\N	sequence	3	SO	chromosome_variation	hyperploid
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0000055	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number as extra chromosomes are present." [SO:ke]	2927533	\N	\N	sequence	4	SO	variant_collection	hyperploid
SO:0001524	SO:0000240	\N	"" []	SO:0000055	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number as extra chromosomes are present." [SO:ke]	2927534	\N	\N	sequence	4	SO	chromosomally_aberrant_genome	hyperploid
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000055	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number as extra chromosomes are present." [SO:ke]	4000975	\N	\N	sequence	5	SO	sequence_collection	hyperploid
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0000055	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number as extra chromosomes are present." [SO:ke]	4000976	\N	\N	sequence	5	SO	variant_genome	hyperploid
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0000055	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number as extra chromosomes are present." [SO:ke]	4965663	\N	\N	sequence	6	SO	genome	hyperploid
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000055	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number as extra chromosomes are present." [SO:ke]	5740700	\N	\N	sequence	7	SO	sequence_collection	hyperploid
SO:0000056	\N	\N	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number as some chromosomes are missing." [SO:ke]	SO:0000056	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number as some chromosomes are missing." [SO:ke]	45040	\N	\N	sequence	0	SO	hypoploid	hypoploid
SO:0000054	SO:0000056	\N	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number." [SO:ke]	SO:0000056	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number as some chromosomes are missing." [SO:ke]	489615	\N	\N	sequence	1	SO	aneuploid	hypoploid
SO:1000182	SO:0000054	\N	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number." [SO:ke]	SO:0000056	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number as some chromosomes are missing." [SO:ke]	1072026	\N	\N	sequence	2	SO	chromosome_number_variation	hypoploid
SO:0000240	SO:1000182	\N	"" []	SO:0000056	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number as some chromosomes are missing." [SO:ke]	1903045	\N	\N	sequence	3	SO	chromosome_variation	hypoploid
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0000056	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number as some chromosomes are missing." [SO:ke]	2927535	\N	\N	sequence	4	SO	variant_collection	hypoploid
SO:0001524	SO:0000240	\N	"" []	SO:0000056	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number as some chromosomes are missing." [SO:ke]	2927536	\N	\N	sequence	4	SO	chromosomally_aberrant_genome	hypoploid
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000056	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number as some chromosomes are missing." [SO:ke]	4000977	\N	\N	sequence	5	SO	sequence_collection	hypoploid
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0000056	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number as some chromosomes are missing." [SO:ke]	4000978	\N	\N	sequence	5	SO	variant_genome	hypoploid
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0000056	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number as some chromosomes are missing." [SO:ke]	4965664	\N	\N	sequence	6	SO	genome	hypoploid
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000056	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number as some chromosomes are missing." [SO:ke]	5740701	\N	\N	sequence	7	SO	sequence_collection	hypoploid
SO:0000057	\N	SOFA	"A regulatory element of an operon to which activators or repressors bind thereby effecting translation of genes in that operon." [SO:ma]	SO:0000057	"A regulatory element of an operon to which activators or repressors bind thereby effecting translation of genes in that operon." [SO:ma]	45041	\N	SOFA	sequence	0	SO	operator	operator
SO:0000752	SO:0000057	SOFA	"" []	SO:0000057	"A regulatory element of an operon to which activators or repressors bind thereby effecting translation of genes in that operon." [SO:ma]	489616	SOFA	SOFA	sequence	1	SO	gene_group_regulatory_region	operator
SO:0001679	SO:0000752	SOFA	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000057	"A regulatory element of an operon to which activators or repressors bind thereby effecting translation of genes in that operon." [SO:ma]	1072027	SOFA	SOFA	sequence	2	SO	transcription_regulatory_region	operator
SO:0005836	SO:0001679	SOFA	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000057	"A regulatory element of an operon to which activators or repressors bind thereby effecting translation of genes in that operon." [SO:ma]	1903046	SOFA	SOFA	sequence	3	SO	regulatory_region	operator
SO:0000831	SO:0005836	SOFA	"A region of a gene." [SO:ke]	SO:0000057	"A regulatory element of an operon to which activators or repressors bind thereby effecting translation of genes in that operon." [SO:ma]	2927537	SOFA	SOFA	sequence	4	SO	gene_member_region	operator
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000057	"A regulatory element of an operon to which activators or repressors bind thereby effecting translation of genes in that operon." [SO:ma]	4000979	SOFA	SOFA	sequence	5	SO	biological_region	operator
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000057	"A regulatory element of an operon to which activators or repressors bind thereby effecting translation of genes in that operon." [SO:ma]	4965665	SOFA	SOFA	sequence	6	SO	region	operator
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000057	"A regulatory element of an operon to which activators or repressors bind thereby effecting translation of genes in that operon." [SO:ma]	5740702	SOFA	SOFA	sequence	7	SO	sequence_feature	operator
SO:0000059	\N	SOFA	"A binding site that, of a nucleotide molecule, that interacts selectively and non-covalently with polypeptide residues of a nuclease." [SO:cb]	SO:0000059	"A binding site that, of a nucleotide molecule, that interacts selectively and non-covalently with polypeptide residues of a nuclease." [SO:cb]	45042	\N	SOFA	sequence	0	SO	nuclease_binding_site	nuclease_binding_site
SO:0001654	SO:0000059	SOFA	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	SO:0000059	"A binding site that, of a nucleotide molecule, that interacts selectively and non-covalently with polypeptide residues of a nuclease." [SO:cb]	489617	SOFA	SOFA	sequence	1	SO	nucleotide_to_protein_binding_site	nuclease_binding_site
SO:0000410	SO:0001654	SOFA	"A binding site that, in the molecule, interacts selectively and non-covalently with polypeptide molecules." [SO:ke]	SO:0000059	"A binding site that, of a nucleotide molecule, that interacts selectively and non-covalently with polypeptide residues of a nuclease." [SO:cb]	1072028	SOFA	SOFA	sequence	2	SO	protein_binding_site	nuclease_binding_site
SO:0000409	SO:0000410	SOFA	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0000059	"A binding site that, of a nucleotide molecule, that interacts selectively and non-covalently with polypeptide residues of a nuclease." [SO:cb]	1903047	SOFA	biosapiens,SOFA	sequence	3	SO	binding_site	nuclease_binding_site
SO:0001411	SO:0000409	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000059	"A binding site that, of a nucleotide molecule, that interacts selectively and non-covalently with polypeptide residues of a nuclease." [SO:cb]	2927538	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	nuclease_binding_site
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000059	"A binding site that, of a nucleotide molecule, that interacts selectively and non-covalently with polypeptide residues of a nuclease." [SO:cb]	4000980	SOFA	SOFA	sequence	5	SO	region	nuclease_binding_site
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000059	"A binding site that, of a nucleotide molecule, that interacts selectively and non-covalently with polypeptide residues of a nuclease." [SO:cb]	4965666	SOFA	SOFA	sequence	6	SO	sequence_feature	nuclease_binding_site
SO:0000060	\N	\N	"" []	SO:0000060	"" []	45043	\N	\N	sequence	0	SO	compound_chromosome_arm	compound_chromosome_arm
SO:1000042	SO:0000060	\N	"A chromosome structure variant where a monocentric element is caused by the fusion of two chromosome arms." [SO:ke]	SO:0000060	"" []	489618	\N	\N	sequence	1	SO	compound_chromosome	compound_chromosome_arm
SO:1000183	SO:1000042	\N	"" []	SO:0000060	"" []	1072029	\N	\N	sequence	2	SO	chromosome_structure_variation	compound_chromosome_arm
SO:0000240	SO:1000183	\N	"" []	SO:0000060	"" []	1903048	\N	\N	sequence	3	SO	chromosome_variation	compound_chromosome_arm
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0000060	"" []	2927539	\N	\N	sequence	4	SO	variant_collection	compound_chromosome_arm
SO:0001524	SO:0000240	\N	"" []	SO:0000060	"" []	2927540	\N	\N	sequence	4	SO	chromosomally_aberrant_genome	compound_chromosome_arm
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000060	"" []	4000981	\N	\N	sequence	5	SO	sequence_collection	compound_chromosome_arm
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0000060	"" []	4000982	\N	\N	sequence	5	SO	variant_genome	compound_chromosome_arm
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0000060	"" []	4965667	\N	\N	sequence	6	SO	genome	compound_chromosome_arm
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000060	"" []	5740703	\N	\N	sequence	7	SO	sequence_collection	compound_chromosome_arm
SO:0000061	\N	\N	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues of a restriction enzyme." [SO:cb]	SO:0000061	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues of a restriction enzyme." [SO:cb]	45044	\N	\N	sequence	0	SO	restriction_enzyme_binding_site	restriction_enzyme_binding_site
SO:0000059	SO:0000061	\N	"A binding site that, of a nucleotide molecule, that interacts selectively and non-covalently with polypeptide residues of a nuclease." [SO:cb]	SO:0000061	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues of a restriction enzyme." [SO:cb]	489619	\N	SOFA	sequence	1	SO	nuclease_binding_site	restriction_enzyme_binding_site
SO:0001654	SO:0000059	\N	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	SO:0000061	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues of a restriction enzyme." [SO:cb]	1072030	SOFA	SOFA	sequence	2	SO	nucleotide_to_protein_binding_site	restriction_enzyme_binding_site
SO:0000410	SO:0001654	\N	"A binding site that, in the molecule, interacts selectively and non-covalently with polypeptide molecules." [SO:ke]	SO:0000061	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues of a restriction enzyme." [SO:cb]	1903049	SOFA	SOFA	sequence	3	SO	protein_binding_site	restriction_enzyme_binding_site
SO:0000409	SO:0000410	\N	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0000061	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues of a restriction enzyme." [SO:cb]	2927541	SOFA	biosapiens,SOFA	sequence	4	SO	binding_site	restriction_enzyme_binding_site
SO:0001411	SO:0000409	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000061	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues of a restriction enzyme." [SO:cb]	4000983	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	restriction_enzyme_binding_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000061	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues of a restriction enzyme." [SO:cb]	4965668	SOFA	SOFA	sequence	6	SO	region	restriction_enzyme_binding_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000061	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues of a restriction enzyme." [SO:cb]	5740704	SOFA	SOFA	sequence	7	SO	sequence_feature	restriction_enzyme_binding_site
SO:0000062	\N	\N	"An intrachromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	SO:0000062	"An intrachromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	45045	\N	\N	sequence	0	SO	deficient_intrachromosomal_transposition	deficient_intrachromosomal_transposition
SO:1000029	SO:0000062	\N	"An incomplete chromosome." [SO:ke]	SO:0000062	"An intrachromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	489620	\N	\N	sequence	1	SO	chromosomal_deletion	deficient_intrachromosomal_transposition
SO:1000041	SO:0000062	\N	"A chromosome structure variation whereby a transposition occurred within a chromosome." [SO:ke]	SO:0000062	"An intrachromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	489621	\N	\N	sequence	1	SO	intrachromosomal_transposition	deficient_intrachromosomal_transposition
SO:1000028	SO:1000029	\N	"A chromosomal structure variation within a single chromosome." [SO:ke]	SO:0000062	"An intrachromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	1072031	\N	\N	sequence	2	SO	intrachromosomal_mutation	deficient_intrachromosomal_transposition
SO:0000453	SO:1000041	\N	"A chromosome structure variant whereby a region of a chromosome has been transferred to another position. Among interchromosomal rearrangements, the term transposition is reserved for that class in which the telomeres of the chromosomes involved are coupled (that is to say, form the two ends of a single DNA molecule) as in wild-type." [FB:reference_manual, SO:ke]	SO:0000062	"An intrachromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	1072032	\N	\N	sequence	2	SO	chromosomal_transposition	deficient_intrachromosomal_transposition
SO:1000038	SO:1000041	\N	"A duplication that occurred within a chromosome." [SO:ke]	SO:0000062	"An intrachromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	1072033	\N	\N	sequence	2	SO	intrachromosomal_duplication	deficient_intrachromosomal_transposition
SO:1000183	SO:1000028	\N	"" []	SO:0000062	"An intrachromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	2927543	\N	\N	sequence	4	SO	chromosome_structure_variation	deficient_intrachromosomal_transposition
SO:1000183	SO:0000453	\N	"" []	SO:0000062	"An intrachromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	1903051	\N	\N	sequence	3	SO	chromosome_structure_variation	deficient_intrachromosomal_transposition
SO:1000028	SO:1000038	\N	"A chromosomal structure variation within a single chromosome." [SO:ke]	SO:0000062	"An intrachromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	1903052	\N	\N	sequence	3	SO	intrachromosomal_mutation	deficient_intrachromosomal_transposition
SO:1000037	SO:1000038	\N	"An extra chromosome." [SO:ke]	SO:0000062	"An intrachromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	1903053	\N	\N	sequence	3	SO	chromosomal_duplication	deficient_intrachromosomal_transposition
SO:0000240	SO:1000183	\N	"" []	SO:0000062	"An intrachromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	3173856	\N	\N	sequence	5	SO	chromosome_variation	deficient_intrachromosomal_transposition
SO:1000183	SO:1000037	\N	"" []	SO:0000062	"An intrachromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	2927544	\N	\N	sequence	4	SO	chromosome_structure_variation	deficient_intrachromosomal_transposition
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0000062	"An intrachromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	4385700	\N	\N	sequence	6	SO	variant_collection	deficient_intrachromosomal_transposition
SO:0001524	SO:0000240	\N	"" []	SO:0000062	"An intrachromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	4385701	\N	\N	sequence	6	SO	chromosomally_aberrant_genome	deficient_intrachromosomal_transposition
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000062	"An intrachromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	5407368	\N	\N	sequence	7	SO	sequence_collection	deficient_intrachromosomal_transposition
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0000062	"An intrachromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	5407369	\N	\N	sequence	7	SO	variant_genome	deficient_intrachromosomal_transposition
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0000062	"An intrachromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	6146603	\N	\N	sequence	8	SO	genome	deficient_intrachromosomal_transposition
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000062	"An intrachromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	6631368	\N	\N	sequence	9	SO	sequence_collection	deficient_intrachromosomal_transposition
SO:0000063	\N	\N	"An interchromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [SO:ke]	SO:0000063	"An interchromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [SO:ke]	45046	\N	\N	sequence	0	SO	deficient_interchromosomal_transposition	deficient_interchromosomal_transposition
SO:1000155	SO:0000063	\N	"A chromosome structure variation whereby a transposition occurred between chromosomes." [SO:ke]	SO:0000063	"An interchromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [SO:ke]	489622	\N	\N	sequence	1	SO	interchromosomal_transposition	deficient_interchromosomal_transposition
SO:0000453	SO:1000155	\N	"A chromosome structure variant whereby a region of a chromosome has been transferred to another position. Among interchromosomal rearrangements, the term transposition is reserved for that class in which the telomeres of the chromosomes involved are coupled (that is to say, form the two ends of a single DNA molecule) as in wild-type." [FB:reference_manual, SO:ke]	SO:0000063	"An interchromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [SO:ke]	1072034	\N	\N	sequence	2	SO	chromosomal_transposition	deficient_interchromosomal_transposition
SO:1000031	SO:1000155	\N	"A chromosomal structure variation whereby more than one chromosome is involved." [SO:ke]	SO:0000063	"An interchromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [SO:ke]	1072035	\N	\N	sequence	2	SO	interchromosomal_mutation	deficient_interchromosomal_transposition
SO:1000183	SO:0000453	\N	"" []	SO:0000063	"An interchromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [SO:ke]	1903054	\N	\N	sequence	3	SO	chromosome_structure_variation	deficient_interchromosomal_transposition
SO:1000183	SO:1000031	\N	"" []	SO:0000063	"An interchromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [SO:ke]	1903055	\N	\N	sequence	3	SO	chromosome_structure_variation	deficient_interchromosomal_transposition
SO:0000240	SO:1000183	\N	"" []	SO:0000063	"An interchromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [SO:ke]	2927545	\N	\N	sequence	4	SO	chromosome_variation	deficient_interchromosomal_transposition
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0000063	"An interchromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [SO:ke]	4000986	\N	\N	sequence	5	SO	variant_collection	deficient_interchromosomal_transposition
SO:0001524	SO:0000240	\N	"" []	SO:0000063	"An interchromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [SO:ke]	4000987	\N	\N	sequence	5	SO	chromosomally_aberrant_genome	deficient_interchromosomal_transposition
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000063	"An interchromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [SO:ke]	4965671	\N	\N	sequence	6	SO	sequence_collection	deficient_interchromosomal_transposition
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0000063	"An interchromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [SO:ke]	4965672	\N	\N	sequence	6	SO	variant_genome	deficient_interchromosomal_transposition
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0000063	"An interchromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [SO:ke]	5740706	\N	\N	sequence	7	SO	genome	deficient_interchromosomal_transposition
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000063	"An interchromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining." [SO:ke]	6310732	\N	\N	sequence	8	SO	sequence_collection	deficient_interchromosomal_transposition
SO:0000065	\N	\N	"A chromosome structure variation whereby an arm exists as an individual chromosome element." [SO:ke]	SO:0000065	"A chromosome structure variation whereby an arm exists as an individual chromosome element." [SO:ke]	45047	\N	\N	sequence	0	SO	free_chromosome_arm	free_chromosome_arm
SO:1000183	SO:0000065	\N	"" []	SO:0000065	"A chromosome structure variation whereby an arm exists as an individual chromosome element." [SO:ke]	489623	\N	\N	sequence	1	SO	chromosome_structure_variation	free_chromosome_arm
SO:0000240	SO:1000183	\N	"" []	SO:0000065	"A chromosome structure variation whereby an arm exists as an individual chromosome element." [SO:ke]	1072036	\N	\N	sequence	2	SO	chromosome_variation	free_chromosome_arm
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0000065	"A chromosome structure variation whereby an arm exists as an individual chromosome element." [SO:ke]	1903056	\N	\N	sequence	3	SO	variant_collection	free_chromosome_arm
SO:0001524	SO:0000240	\N	"" []	SO:0000065	"A chromosome structure variation whereby an arm exists as an individual chromosome element." [SO:ke]	1903057	\N	\N	sequence	3	SO	chromosomally_aberrant_genome	free_chromosome_arm
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000065	"A chromosome structure variation whereby an arm exists as an individual chromosome element." [SO:ke]	2927546	\N	\N	sequence	4	SO	sequence_collection	free_chromosome_arm
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0000065	"A chromosome structure variation whereby an arm exists as an individual chromosome element." [SO:ke]	2927547	\N	\N	sequence	4	SO	variant_genome	free_chromosome_arm
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0000065	"A chromosome structure variation whereby an arm exists as an individual chromosome element." [SO:ke]	4000988	\N	\N	sequence	5	SO	genome	free_chromosome_arm
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000065	"A chromosome structure variation whereby an arm exists as an individual chromosome element." [SO:ke]	4965673	\N	\N	sequence	6	SO	sequence_collection	free_chromosome_arm
SO:0000067	\N	\N	"" []	SO:0000067	"" []	45048	\N	\N	sequence	0	SO	gene_to_gene_feature	gene_to_gene_feature
SO:0000401	SO:0000067	\N	"" []	SO:0000067	"" []	489624	\N	\N	sequence	1	SO	gene_attribute	gene_to_gene_feature
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000067	"" []	1072037	\N	\N	sequence	2	SO	feature_attribute	gene_to_gene_feature
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000067	"" []	1903058	\N	\N	sequence	3	SO	sequence_attribute	gene_to_gene_feature
SO:0000068	\N	\N	"An attribute describing a gene that has a sequence that overlaps the sequence of another gene." [SO:ke]	SO:0000068	"An attribute describing a gene that has a sequence that overlaps the sequence of another gene." [SO:ke]	45049	\N	\N	sequence	0	SO	overlapping	overlapping
SO:0000067	SO:0000068	\N	"" []	SO:0000068	"An attribute describing a gene that has a sequence that overlaps the sequence of another gene." [SO:ke]	489625	\N	\N	sequence	1	SO	gene_to_gene_feature	overlapping
SO:0000401	SO:0000067	\N	"" []	SO:0000068	"An attribute describing a gene that has a sequence that overlaps the sequence of another gene." [SO:ke]	1072038	\N	\N	sequence	2	SO	gene_attribute	overlapping
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000068	"An attribute describing a gene that has a sequence that overlaps the sequence of another gene." [SO:ke]	1903059	\N	\N	sequence	3	SO	feature_attribute	overlapping
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000068	"An attribute describing a gene that has a sequence that overlaps the sequence of another gene." [SO:ke]	2927548	\N	\N	sequence	4	SO	sequence_attribute	overlapping
SO:0000069	\N	\N	"An attribute to describe a gene when it is located within the intron of another gene." [SO:ke]	SO:0000069	"An attribute to describe a gene when it is located within the intron of another gene." [SO:ke]	45050	\N	\N	sequence	0	SO	inside_intron	inside_intron
SO:0000068	SO:0000069	\N	"An attribute describing a gene that has a sequence that overlaps the sequence of another gene." [SO:ke]	SO:0000069	"An attribute to describe a gene when it is located within the intron of another gene." [SO:ke]	489626	\N	\N	sequence	1	SO	overlapping	inside_intron
SO:0000067	SO:0000068	\N	"" []	SO:0000069	"An attribute to describe a gene when it is located within the intron of another gene." [SO:ke]	1072039	\N	\N	sequence	2	SO	gene_to_gene_feature	inside_intron
SO:0000401	SO:0000067	\N	"" []	SO:0000069	"An attribute to describe a gene when it is located within the intron of another gene." [SO:ke]	1903060	\N	\N	sequence	3	SO	gene_attribute	inside_intron
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000069	"An attribute to describe a gene when it is located within the intron of another gene." [SO:ke]	2927549	\N	\N	sequence	4	SO	feature_attribute	inside_intron
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000069	"An attribute to describe a gene when it is located within the intron of another gene." [SO:ke]	4000989	\N	\N	sequence	5	SO	sequence_attribute	inside_intron
SO:0000070	\N	\N	"An attribute to describe a gene when it is located within the intron of another gene and on the opposite strand." [SO:ke]	SO:0000070	"An attribute to describe a gene when it is located within the intron of another gene and on the opposite strand." [SO:ke]	45051	\N	\N	sequence	0	SO	inside_intron_antiparallel	inside_intron_antiparallel
SO:0000069	SO:0000070	\N	"An attribute to describe a gene when it is located within the intron of another gene." [SO:ke]	SO:0000070	"An attribute to describe a gene when it is located within the intron of another gene and on the opposite strand." [SO:ke]	489627	\N	\N	sequence	1	SO	inside_intron	inside_intron_antiparallel
SO:0000068	SO:0000069	\N	"An attribute describing a gene that has a sequence that overlaps the sequence of another gene." [SO:ke]	SO:0000070	"An attribute to describe a gene when it is located within the intron of another gene and on the opposite strand." [SO:ke]	1072040	\N	\N	sequence	2	SO	overlapping	inside_intron_antiparallel
SO:0000067	SO:0000068	\N	"" []	SO:0000070	"An attribute to describe a gene when it is located within the intron of another gene and on the opposite strand." [SO:ke]	1903061	\N	\N	sequence	3	SO	gene_to_gene_feature	inside_intron_antiparallel
SO:0000401	SO:0000067	\N	"" []	SO:0000070	"An attribute to describe a gene when it is located within the intron of another gene and on the opposite strand." [SO:ke]	2927550	\N	\N	sequence	4	SO	gene_attribute	inside_intron_antiparallel
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000070	"An attribute to describe a gene when it is located within the intron of another gene and on the opposite strand." [SO:ke]	4000990	\N	\N	sequence	5	SO	feature_attribute	inside_intron_antiparallel
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000070	"An attribute to describe a gene when it is located within the intron of another gene and on the opposite strand." [SO:ke]	4965674	\N	\N	sequence	6	SO	sequence_attribute	inside_intron_antiparallel
SO:0000071	\N	\N	"An attribute to describe a gene when it is located within the intron of another gene and on the same strand." [SO:ke]	SO:0000071	"An attribute to describe a gene when it is located within the intron of another gene and on the same strand." [SO:ke]	45052	\N	\N	sequence	0	SO	inside_intron_parallel	inside_intron_parallel
SO:0000069	SO:0000071	\N	"An attribute to describe a gene when it is located within the intron of another gene." [SO:ke]	SO:0000071	"An attribute to describe a gene when it is located within the intron of another gene and on the same strand." [SO:ke]	489628	\N	\N	sequence	1	SO	inside_intron	inside_intron_parallel
SO:0000068	SO:0000069	\N	"An attribute describing a gene that has a sequence that overlaps the sequence of another gene." [SO:ke]	SO:0000071	"An attribute to describe a gene when it is located within the intron of another gene and on the same strand." [SO:ke]	1072041	\N	\N	sequence	2	SO	overlapping	inside_intron_parallel
SO:0000067	SO:0000068	\N	"" []	SO:0000071	"An attribute to describe a gene when it is located within the intron of another gene and on the same strand." [SO:ke]	1903062	\N	\N	sequence	3	SO	gene_to_gene_feature	inside_intron_parallel
SO:0000401	SO:0000067	\N	"" []	SO:0000071	"An attribute to describe a gene when it is located within the intron of another gene and on the same strand." [SO:ke]	2927551	\N	\N	sequence	4	SO	gene_attribute	inside_intron_parallel
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000071	"An attribute to describe a gene when it is located within the intron of another gene and on the same strand." [SO:ke]	4000991	\N	\N	sequence	5	SO	feature_attribute	inside_intron_parallel
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000071	"An attribute to describe a gene when it is located within the intron of another gene and on the same strand." [SO:ke]	4965675	\N	\N	sequence	6	SO	sequence_attribute	inside_intron_parallel
SO:0000073	\N	\N	"An attribute to describe a gene when the five prime region overlaps with another gene's 3' region." [SO:ke]	SO:0000073	"An attribute to describe a gene when the five prime region overlaps with another gene's 3' region." [SO:ke]	45053	\N	\N	sequence	0	SO	five_prime_three_prime_overlap	five_prime_three_prime_overlap
SO:0000068	SO:0000073	\N	"An attribute describing a gene that has a sequence that overlaps the sequence of another gene." [SO:ke]	SO:0000073	"An attribute to describe a gene when the five prime region overlaps with another gene's 3' region." [SO:ke]	489629	\N	\N	sequence	1	SO	overlapping	five_prime_three_prime_overlap
SO:0000067	SO:0000068	\N	"" []	SO:0000073	"An attribute to describe a gene when the five prime region overlaps with another gene's 3' region." [SO:ke]	1072042	\N	\N	sequence	2	SO	gene_to_gene_feature	five_prime_three_prime_overlap
SO:0000401	SO:0000067	\N	"" []	SO:0000073	"An attribute to describe a gene when the five prime region overlaps with another gene's 3' region." [SO:ke]	1903063	\N	\N	sequence	3	SO	gene_attribute	five_prime_three_prime_overlap
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000073	"An attribute to describe a gene when the five prime region overlaps with another gene's 3' region." [SO:ke]	2927552	\N	\N	sequence	4	SO	feature_attribute	five_prime_three_prime_overlap
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000073	"An attribute to describe a gene when the five prime region overlaps with another gene's 3' region." [SO:ke]	4000992	\N	\N	sequence	5	SO	sequence_attribute	five_prime_three_prime_overlap
SO:0000074	\N	\N	"An attribute to describe a gene when the five prime region overlaps with another gene's five prime region." [SO:ke]	SO:0000074	"An attribute to describe a gene when the five prime region overlaps with another gene's five prime region." [SO:ke]	45054	\N	\N	sequence	0	SO	five_prime_five_prime_overlap	five_prime_five_prime_overlap
SO:0000068	SO:0000074	\N	"An attribute describing a gene that has a sequence that overlaps the sequence of another gene." [SO:ke]	SO:0000074	"An attribute to describe a gene when the five prime region overlaps with another gene's five prime region." [SO:ke]	489630	\N	\N	sequence	1	SO	overlapping	five_prime_five_prime_overlap
SO:0000067	SO:0000068	\N	"" []	SO:0000074	"An attribute to describe a gene when the five prime region overlaps with another gene's five prime region." [SO:ke]	1072043	\N	\N	sequence	2	SO	gene_to_gene_feature	five_prime_five_prime_overlap
SO:0000401	SO:0000067	\N	"" []	SO:0000074	"An attribute to describe a gene when the five prime region overlaps with another gene's five prime region." [SO:ke]	1903064	\N	\N	sequence	3	SO	gene_attribute	five_prime_five_prime_overlap
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000074	"An attribute to describe a gene when the five prime region overlaps with another gene's five prime region." [SO:ke]	2927553	\N	\N	sequence	4	SO	feature_attribute	five_prime_five_prime_overlap
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000074	"An attribute to describe a gene when the five prime region overlaps with another gene's five prime region." [SO:ke]	4000993	\N	\N	sequence	5	SO	sequence_attribute	five_prime_five_prime_overlap
SO:0000075	\N	\N	"An attribute to describe a gene when the 3' region overlaps with another gene's 3' region." [SO:ke]	SO:0000075	"An attribute to describe a gene when the 3' region overlaps with another gene's 3' region." [SO:ke]	45055	\N	\N	sequence	0	SO	three_prime_three_prime_overlap	three_prime_three_prime_overlap
SO:0000068	SO:0000075	\N	"An attribute describing a gene that has a sequence that overlaps the sequence of another gene." [SO:ke]	SO:0000075	"An attribute to describe a gene when the 3' region overlaps with another gene's 3' region." [SO:ke]	489631	\N	\N	sequence	1	SO	overlapping	three_prime_three_prime_overlap
SO:0000067	SO:0000068	\N	"" []	SO:0000075	"An attribute to describe a gene when the 3' region overlaps with another gene's 3' region." [SO:ke]	1072044	\N	\N	sequence	2	SO	gene_to_gene_feature	three_prime_three_prime_overlap
SO:0000401	SO:0000067	\N	"" []	SO:0000075	"An attribute to describe a gene when the 3' region overlaps with another gene's 3' region." [SO:ke]	1903065	\N	\N	sequence	3	SO	gene_attribute	three_prime_three_prime_overlap
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000075	"An attribute to describe a gene when the 3' region overlaps with another gene's 3' region." [SO:ke]	2927554	\N	\N	sequence	4	SO	feature_attribute	three_prime_three_prime_overlap
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000075	"An attribute to describe a gene when the 3' region overlaps with another gene's 3' region." [SO:ke]	4000994	\N	\N	sequence	5	SO	sequence_attribute	three_prime_three_prime_overlap
SO:0000076	\N	\N	"An attribute to describe a gene when the 3' region overlaps with another gene's 5' region." [SO:ke]	SO:0000076	"An attribute to describe a gene when the 3' region overlaps with another gene's 5' region." [SO:ke]	45056	\N	\N	sequence	0	SO	three_prime_five_prime_overlap	three_prime_five_prime_overlap
SO:0000068	SO:0000076	\N	"An attribute describing a gene that has a sequence that overlaps the sequence of another gene." [SO:ke]	SO:0000076	"An attribute to describe a gene when the 3' region overlaps with another gene's 5' region." [SO:ke]	489632	\N	\N	sequence	1	SO	overlapping	three_prime_five_prime_overlap
SO:0000067	SO:0000068	\N	"" []	SO:0000076	"An attribute to describe a gene when the 3' region overlaps with another gene's 5' region." [SO:ke]	1072045	\N	\N	sequence	2	SO	gene_to_gene_feature	three_prime_five_prime_overlap
SO:0000401	SO:0000067	\N	"" []	SO:0000076	"An attribute to describe a gene when the 3' region overlaps with another gene's 5' region." [SO:ke]	1903066	\N	\N	sequence	3	SO	gene_attribute	three_prime_five_prime_overlap
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000076	"An attribute to describe a gene when the 3' region overlaps with another gene's 5' region." [SO:ke]	2927555	\N	\N	sequence	4	SO	feature_attribute	three_prime_five_prime_overlap
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000076	"An attribute to describe a gene when the 3' region overlaps with another gene's 5' region." [SO:ke]	4000995	\N	\N	sequence	5	SO	sequence_attribute	three_prime_five_prime_overlap
SO:0000077	\N	\N	"A region sequence that is complementary to a sequence of messenger RNA." [SO:ke]	SO:0000077	"A region sequence that is complementary to a sequence of messenger RNA." [SO:ke]	45057	\N	\N	sequence	0	SO	antisense	antisense
SO:0000068	SO:0000077	\N	"An attribute describing a gene that has a sequence that overlaps the sequence of another gene." [SO:ke]	SO:0000077	"A region sequence that is complementary to a sequence of messenger RNA." [SO:ke]	489633	\N	\N	sequence	1	SO	overlapping	antisense
SO:0000067	SO:0000068	\N	"" []	SO:0000077	"A region sequence that is complementary to a sequence of messenger RNA." [SO:ke]	1072046	\N	\N	sequence	2	SO	gene_to_gene_feature	antisense
SO:0000401	SO:0000067	\N	"" []	SO:0000077	"A region sequence that is complementary to a sequence of messenger RNA." [SO:ke]	1903067	\N	\N	sequence	3	SO	gene_attribute	antisense
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000077	"A region sequence that is complementary to a sequence of messenger RNA." [SO:ke]	2927556	\N	\N	sequence	4	SO	feature_attribute	antisense
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000077	"A region sequence that is complementary to a sequence of messenger RNA." [SO:ke]	4000996	\N	\N	sequence	5	SO	sequence_attribute	antisense
SO:0000078	\N	\N	"A transcript that is polycistronic." [SO:xp]	SO:0000078	"A transcript that is polycistronic." [SO:xp]	45058	\N	\N	sequence	0	SO	polycistronic_transcript	polycistronic_transcript
SO:0000673	SO:0000078	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000078	"A transcript that is polycistronic." [SO:xp]	489634	\N	SOFA	sequence	1	SO	transcript	polycistronic_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000078	"A transcript that is polycistronic." [SO:xp]	1072047	SOFA	SOFA	sequence	2	SO	gene_member_region	polycistronic_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000078	"A transcript that is polycistronic." [SO:xp]	1903068	SOFA	SOFA	sequence	3	SO	biological_region	polycistronic_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000078	"A transcript that is polycistronic." [SO:xp]	2927557	SOFA	SOFA	sequence	4	SO	region	polycistronic_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000078	"A transcript that is polycistronic." [SO:xp]	4000997	SOFA	SOFA	sequence	5	SO	sequence_feature	polycistronic_transcript
SO:0000079	\N	\N	"A transcript that is dicistronic." [SO:ke]	SO:0000079	"A transcript that is dicistronic." [SO:ke]	45059	\N	\N	sequence	0	SO	dicistronic_transcript	dicistronic_transcript
SO:0000078	SO:0000079	\N	"A transcript that is polycistronic." [SO:xp]	SO:0000079	"A transcript that is dicistronic." [SO:ke]	489635	\N	\N	sequence	1	SO	polycistronic_transcript	dicistronic_transcript
SO:0000673	SO:0000078	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000079	"A transcript that is dicistronic." [SO:ke]	1072048	\N	SOFA	sequence	2	SO	transcript	dicistronic_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000079	"A transcript that is dicistronic." [SO:ke]	1903069	SOFA	SOFA	sequence	3	SO	gene_member_region	dicistronic_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000079	"A transcript that is dicistronic." [SO:ke]	2927558	SOFA	SOFA	sequence	4	SO	biological_region	dicistronic_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000079	"A transcript that is dicistronic." [SO:ke]	4000998	SOFA	SOFA	sequence	5	SO	region	dicistronic_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000079	"A transcript that is dicistronic." [SO:ke]	4965676	SOFA	SOFA	sequence	6	SO	sequence_feature	dicistronic_transcript
SO:0000080	\N	\N	"" []	SO:0000080	"" []	45060	\N	\N	sequence	0	SO	operon_member	operon_member
SO:0000081	SO:0000080	\N	"" []	SO:0000080	"" []	489636	\N	\N	sequence	1	SO	gene_array_member	operon_member
SO:0000401	SO:0000081	\N	"" []	SO:0000080	"" []	1072049	\N	\N	sequence	2	SO	gene_attribute	operon_member
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000080	"" []	1903070	\N	\N	sequence	3	SO	feature_attribute	operon_member
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000080	"" []	2927559	\N	\N	sequence	4	SO	sequence_attribute	operon_member
SO:0000081	\N	\N	"" []	SO:0000081	"" []	45061	\N	\N	sequence	0	SO	gene_array_member	gene_array_member
SO:0000401	SO:0000081	\N	"" []	SO:0000081	"" []	489637	\N	\N	sequence	1	SO	gene_attribute	gene_array_member
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000081	"" []	1072050	\N	\N	sequence	2	SO	feature_attribute	gene_array_member
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000081	"" []	1903071	\N	\N	sequence	3	SO	sequence_attribute	gene_array_member
SO:0000083	\N	\N	"" []	SO:0000083	"" []	45062	\N	\N	sequence	0	SO	macronuclear_sequence	macronuclear_sequence
SO:0000736	SO:0000083	\N	"" []	SO:0000083	"" []	489638	\N	\N	sequence	1	SO	organelle_sequence	macronuclear_sequence
SO:0000735	SO:0000736	\N	"" []	SO:0000083	"" []	1072051	\N	\N	sequence	2	SO	sequence_location	macronuclear_sequence
SO:0000400	SO:0000735	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000083	"" []	1903072	\N	\N	sequence	3	SO	sequence_attribute	macronuclear_sequence
SO:0000084	\N	\N	"" []	SO:0000084	"" []	45063	\N	\N	sequence	0	SO	micronuclear_sequence	micronuclear_sequence
SO:0000736	SO:0000084	\N	"" []	SO:0000084	"" []	489639	\N	\N	sequence	1	SO	organelle_sequence	micronuclear_sequence
SO:0000735	SO:0000736	\N	"" []	SO:0000084	"" []	1072052	\N	\N	sequence	2	SO	sequence_location	micronuclear_sequence
SO:0000400	SO:0000735	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000084	"" []	1903073	\N	\N	sequence	3	SO	sequence_attribute	micronuclear_sequence
SO:0000087	\N	\N	"A gene from nuclear sequence." [SO:xp]	SO:0000087	"A gene from nuclear sequence." [SO:xp]	45064	\N	\N	sequence	0	SO	nuclear_gene	nuclear_gene
SO:0000704	SO:0000087	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000087	"A gene from nuclear sequence." [SO:xp]	489640	\N	SOFA	sequence	1	SO	gene	nuclear_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000087	"A gene from nuclear sequence." [SO:xp]	1072053	SOFA	SOFA	sequence	2	SO	biological_region	nuclear_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000087	"A gene from nuclear sequence." [SO:xp]	1903074	SOFA	SOFA	sequence	3	SO	region	nuclear_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000087	"A gene from nuclear sequence." [SO:xp]	2927560	SOFA	SOFA	sequence	4	SO	sequence_feature	nuclear_gene
SO:0000088	\N	\N	"A gene located in mitochondrial sequence." [SO:xp]	SO:0000088	"A gene located in mitochondrial sequence." [SO:xp]	45065	\N	\N	sequence	0	SO	mt_gene	mt_gene
SO:0000704	SO:0000088	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000088	"A gene located in mitochondrial sequence." [SO:xp]	489641	\N	SOFA	sequence	1	SO	gene	mt_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000088	"A gene located in mitochondrial sequence." [SO:xp]	1072054	SOFA	SOFA	sequence	2	SO	biological_region	mt_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000088	"A gene located in mitochondrial sequence." [SO:xp]	1903075	SOFA	SOFA	sequence	3	SO	region	mt_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000088	"A gene located in mitochondrial sequence." [SO:xp]	2927561	SOFA	SOFA	sequence	4	SO	sequence_feature	mt_gene
SO:0000089	\N	\N	"A gene located in kinetoplast sequence." [SO:xp]	SO:0000089	"A gene located in kinetoplast sequence." [SO:xp]	45066	\N	\N	sequence	0	SO	kinetoplast_gene	kinetoplast_gene
SO:0000088	SO:0000089	\N	"A gene located in mitochondrial sequence." [SO:xp]	SO:0000089	"A gene located in kinetoplast sequence." [SO:xp]	489642	\N	\N	sequence	1	SO	mt_gene	kinetoplast_gene
SO:0000704	SO:0000088	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000089	"A gene located in kinetoplast sequence." [SO:xp]	1072055	\N	SOFA	sequence	2	SO	gene	kinetoplast_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000089	"A gene located in kinetoplast sequence." [SO:xp]	1903076	SOFA	SOFA	sequence	3	SO	biological_region	kinetoplast_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000089	"A gene located in kinetoplast sequence." [SO:xp]	2927562	SOFA	SOFA	sequence	4	SO	region	kinetoplast_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000089	"A gene located in kinetoplast sequence." [SO:xp]	4000999	SOFA	SOFA	sequence	5	SO	sequence_feature	kinetoplast_gene
SO:0000090	\N	\N	"A gene from plastid sequence." [SO:xp]	SO:0000090	"A gene from plastid sequence." [SO:xp]	45067	\N	\N	sequence	0	SO	plastid_gene	plastid_gene
SO:0000704	SO:0000090	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000090	"A gene from plastid sequence." [SO:xp]	489643	\N	SOFA	sequence	1	SO	gene	plastid_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000090	"A gene from plastid sequence." [SO:xp]	1072056	SOFA	SOFA	sequence	2	SO	biological_region	plastid_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000090	"A gene from plastid sequence." [SO:xp]	1903077	SOFA	SOFA	sequence	3	SO	region	plastid_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000090	"A gene from plastid sequence." [SO:xp]	2927563	SOFA	SOFA	sequence	4	SO	sequence_feature	plastid_gene
SO:0000091	\N	\N	"A gene from apicoplast sequence." [SO:xp]	SO:0000091	"A gene from apicoplast sequence." [SO:xp]	45068	\N	\N	sequence	0	SO	apicoplast_gene	apicoplast_gene
SO:0000090	SO:0000091	\N	"A gene from plastid sequence." [SO:xp]	SO:0000091	"A gene from apicoplast sequence." [SO:xp]	489644	\N	\N	sequence	1	SO	plastid_gene	apicoplast_gene
SO:0000704	SO:0000090	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000091	"A gene from apicoplast sequence." [SO:xp]	1072057	\N	SOFA	sequence	2	SO	gene	apicoplast_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000091	"A gene from apicoplast sequence." [SO:xp]	1903078	SOFA	SOFA	sequence	3	SO	biological_region	apicoplast_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000091	"A gene from apicoplast sequence." [SO:xp]	2927564	SOFA	SOFA	sequence	4	SO	region	apicoplast_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000091	"A gene from apicoplast sequence." [SO:xp]	4001000	SOFA	SOFA	sequence	5	SO	sequence_feature	apicoplast_gene
SO:0000092	\N	\N	"A gene from chloroplast sequence." [SO:xp]	SO:0000092	"A gene from chloroplast sequence." [SO:xp]	45069	\N	\N	sequence	0	SO	ct_gene	ct_gene
SO:0000090	SO:0000092	\N	"A gene from plastid sequence." [SO:xp]	SO:0000092	"A gene from chloroplast sequence." [SO:xp]	489645	\N	\N	sequence	1	SO	plastid_gene	ct_gene
SO:0000704	SO:0000090	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000092	"A gene from chloroplast sequence." [SO:xp]	1072058	\N	SOFA	sequence	2	SO	gene	ct_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000092	"A gene from chloroplast sequence." [SO:xp]	1903079	SOFA	SOFA	sequence	3	SO	biological_region	ct_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000092	"A gene from chloroplast sequence." [SO:xp]	2927565	SOFA	SOFA	sequence	4	SO	region	ct_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000092	"A gene from chloroplast sequence." [SO:xp]	4001001	SOFA	SOFA	sequence	5	SO	sequence_feature	ct_gene
SO:0000093	\N	\N	"A gene from chromoplast_sequence." [SO:xp]	SO:0000093	"A gene from chromoplast_sequence." [SO:xp]	45070	\N	\N	sequence	0	SO	chromoplast_gene	chromoplast_gene
SO:0000090	SO:0000093	\N	"A gene from plastid sequence." [SO:xp]	SO:0000093	"A gene from chromoplast_sequence." [SO:xp]	489646	\N	\N	sequence	1	SO	plastid_gene	chromoplast_gene
SO:0000704	SO:0000090	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000093	"A gene from chromoplast_sequence." [SO:xp]	1072059	\N	SOFA	sequence	2	SO	gene	chromoplast_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000093	"A gene from chromoplast_sequence." [SO:xp]	1903080	SOFA	SOFA	sequence	3	SO	biological_region	chromoplast_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000093	"A gene from chromoplast_sequence." [SO:xp]	2927566	SOFA	SOFA	sequence	4	SO	region	chromoplast_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000093	"A gene from chromoplast_sequence." [SO:xp]	4001002	SOFA	SOFA	sequence	5	SO	sequence_feature	chromoplast_gene
SO:0000094	\N	\N	"A gene from cyanelle sequence." [SO:xp]	SO:0000094	"A gene from cyanelle sequence." [SO:xp]	45071	\N	\N	sequence	0	SO	cyanelle_gene	cyanelle_gene
SO:0000090	SO:0000094	\N	"A gene from plastid sequence." [SO:xp]	SO:0000094	"A gene from cyanelle sequence." [SO:xp]	489647	\N	\N	sequence	1	SO	plastid_gene	cyanelle_gene
SO:0000704	SO:0000090	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000094	"A gene from cyanelle sequence." [SO:xp]	1072060	\N	SOFA	sequence	2	SO	gene	cyanelle_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000094	"A gene from cyanelle sequence." [SO:xp]	1903081	SOFA	SOFA	sequence	3	SO	biological_region	cyanelle_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000094	"A gene from cyanelle sequence." [SO:xp]	2927567	SOFA	SOFA	sequence	4	SO	region	cyanelle_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000094	"A gene from cyanelle sequence." [SO:xp]	4001003	SOFA	SOFA	sequence	5	SO	sequence_feature	cyanelle_gene
SO:0000095	\N	\N	"A plastid gene from leucoplast sequence." [SO:xp]	SO:0000095	"A plastid gene from leucoplast sequence." [SO:xp]	45072	\N	\N	sequence	0	SO	leucoplast_gene	leucoplast_gene
SO:0000090	SO:0000095	\N	"A gene from plastid sequence." [SO:xp]	SO:0000095	"A plastid gene from leucoplast sequence." [SO:xp]	489648	\N	\N	sequence	1	SO	plastid_gene	leucoplast_gene
SO:0000704	SO:0000090	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000095	"A plastid gene from leucoplast sequence." [SO:xp]	1072061	\N	SOFA	sequence	2	SO	gene	leucoplast_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000095	"A plastid gene from leucoplast sequence." [SO:xp]	1903082	SOFA	SOFA	sequence	3	SO	biological_region	leucoplast_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000095	"A plastid gene from leucoplast sequence." [SO:xp]	2927568	SOFA	SOFA	sequence	4	SO	region	leucoplast_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000095	"A plastid gene from leucoplast sequence." [SO:xp]	4001004	SOFA	SOFA	sequence	5	SO	sequence_feature	leucoplast_gene
SO:0000096	\N	\N	"A gene from proplastid sequence." [SO:ke]	SO:0000096	"A gene from proplastid sequence." [SO:ke]	45073	\N	\N	sequence	0	SO	proplastid_gene	proplastid_gene
SO:0000090	SO:0000096	\N	"A gene from plastid sequence." [SO:xp]	SO:0000096	"A gene from proplastid sequence." [SO:ke]	489649	\N	\N	sequence	1	SO	plastid_gene	proplastid_gene
SO:0000704	SO:0000090	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000096	"A gene from proplastid sequence." [SO:ke]	1072062	\N	SOFA	sequence	2	SO	gene	proplastid_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000096	"A gene from proplastid sequence." [SO:ke]	1903083	SOFA	SOFA	sequence	3	SO	biological_region	proplastid_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000096	"A gene from proplastid sequence." [SO:ke]	2927569	SOFA	SOFA	sequence	4	SO	region	proplastid_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000096	"A gene from proplastid sequence." [SO:ke]	4001005	SOFA	SOFA	sequence	5	SO	sequence_feature	proplastid_gene
SO:0000097	\N	\N	"A gene from nucleomorph sequence." [SO:xp]	SO:0000097	"A gene from nucleomorph sequence." [SO:xp]	45074	\N	\N	sequence	0	SO	nucleomorph_gene	nucleomorph_gene
SO:0000704	SO:0000097	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000097	"A gene from nucleomorph sequence." [SO:xp]	489650	\N	SOFA	sequence	1	SO	gene	nucleomorph_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000097	"A gene from nucleomorph sequence." [SO:xp]	1072063	SOFA	SOFA	sequence	2	SO	biological_region	nucleomorph_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000097	"A gene from nucleomorph sequence." [SO:xp]	1903084	SOFA	SOFA	sequence	3	SO	region	nucleomorph_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000097	"A gene from nucleomorph sequence." [SO:xp]	2927570	SOFA	SOFA	sequence	4	SO	sequence_feature	nucleomorph_gene
SO:0000098	\N	\N	"A gene from plasmid sequence." [SO:xp]	SO:0000098	"A gene from plasmid sequence." [SO:xp]	45075	\N	\N	sequence	0	SO	plasmid_gene	plasmid_gene
SO:0000704	SO:0000098	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000098	"A gene from plasmid sequence." [SO:xp]	489651	\N	SOFA	sequence	1	SO	gene	plasmid_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000098	"A gene from plasmid sequence." [SO:xp]	1072064	SOFA	SOFA	sequence	2	SO	biological_region	plasmid_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000098	"A gene from plasmid sequence." [SO:xp]	1903085	SOFA	SOFA	sequence	3	SO	region	plasmid_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000098	"A gene from plasmid sequence." [SO:xp]	2927571	SOFA	SOFA	sequence	4	SO	sequence_feature	plasmid_gene
SO:0000099	\N	\N	"A gene from proviral sequence." [SO:xp]	SO:0000099	"A gene from proviral sequence." [SO:xp]	45076	\N	\N	sequence	0	SO	proviral_gene	proviral_gene
SO:0000704	SO:0000099	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000099	"A gene from proviral sequence." [SO:xp]	489652	\N	SOFA	sequence	1	SO	gene	proviral_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000099	"A gene from proviral sequence." [SO:xp]	1072065	SOFA	SOFA	sequence	2	SO	biological_region	proviral_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000099	"A gene from proviral sequence." [SO:xp]	1903086	SOFA	SOFA	sequence	3	SO	region	proviral_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000099	"A gene from proviral sequence." [SO:xp]	2927572	SOFA	SOFA	sequence	4	SO	sequence_feature	proviral_gene
SO:0000100	\N	\N	"A proviral gene with origin endogenous retrovirus." [SO:xp]	SO:0000100	"A proviral gene with origin endogenous retrovirus." [SO:xp]	45077	\N	\N	sequence	0	SO	endogenous_retroviral_gene	endogenous_retroviral_gene
SO:0000099	SO:0000100	\N	"A gene from proviral sequence." [SO:xp]	SO:0000100	"A proviral gene with origin endogenous retrovirus." [SO:xp]	489653	\N	\N	sequence	1	SO	proviral_gene	endogenous_retroviral_gene
SO:0000704	SO:0000099	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000100	"A proviral gene with origin endogenous retrovirus." [SO:xp]	1072066	\N	SOFA	sequence	2	SO	gene	endogenous_retroviral_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000100	"A proviral gene with origin endogenous retrovirus." [SO:xp]	1903087	SOFA	SOFA	sequence	3	SO	biological_region	endogenous_retroviral_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000100	"A proviral gene with origin endogenous retrovirus." [SO:xp]	2927573	SOFA	SOFA	sequence	4	SO	region	endogenous_retroviral_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000100	"A proviral gene with origin endogenous retrovirus." [SO:xp]	4001006	SOFA	SOFA	sequence	5	SO	sequence_feature	endogenous_retroviral_gene
SO:0000101	\N	SOFA	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000101	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	45078	\N	SOFA	sequence	0	SO	transposable_element	transposable_element
SO:0001039	SO:0000101	SOFA	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000101	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	489654	SOFA	SOFA	sequence	1	SO	integrated_mobile_genetic_element	transposable_element
SO:0001037	SO:0001039	SOFA	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000101	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	1072067	SOFA	SOFA	sequence	2	SO	mobile_genetic_element	transposable_element
SO:0001411	SO:0001037	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000101	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	1903088	SOFA	SOFA	sequence	3	SO	biological_region	transposable_element
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000101	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	2927574	SOFA	SOFA	sequence	4	SO	region	transposable_element
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000101	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	4001007	SOFA	SOFA	sequence	5	SO	sequence_feature	transposable_element
SO:0000102	\N	SOFA	"A match to an EST or cDNA sequence." [SO:ke]	SO:0000102	"A match to an EST or cDNA sequence." [SO:ke]	45079	\N	SOFA	sequence	0	SO	expressed_sequence_match	expressed_sequence_match
SO:0000347	SO:0000102	SOFA	"A match against a nucleotide sequence." [SO:ke]	SO:0000102	"A match to an EST or cDNA sequence." [SO:ke]	489655	SOFA	SOFA	sequence	1	SO	nucleotide_match	expressed_sequence_match
SO:0000343	SO:0000347	SOFA	"A region of sequence, aligned to another sequence with some statistical significance, using an algorithm such as BLAST or SIM4." [SO:ke]	SO:0000102	"A match to an EST or cDNA sequence." [SO:ke]	1072068	SOFA	SOFA	sequence	2	SO	match	expressed_sequence_match
SO:0001410	SO:0000343	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000102	"A match to an EST or cDNA sequence." [SO:ke]	1903089	SOFA	SOFA	sequence	3	SO	experimental_feature	expressed_sequence_match
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000102	"A match to an EST or cDNA sequence." [SO:ke]	2927575	SOFA	SOFA	sequence	4	SO	region	expressed_sequence_match
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000102	"A match to an EST or cDNA sequence." [SO:ke]	4001008	SOFA	SOFA	sequence	5	SO	sequence_feature	expressed_sequence_match
SO:0000103	\N	SOFA	"The end of the clone insert." [SO:ke]	SO:0000103	"The end of the clone insert." [SO:ke]	45080	\N	SOFA	sequence	0	SO	clone_insert_end	clone_insert_end
SO:0000699	SO:0000103	SOFA	"A sequence_feature with an extent of zero." [SO:ke]	SO:0000103	"The end of the clone insert." [SO:ke]	489656	SOFA	SOFA	sequence	1	SO	junction	clone_insert_end
SO:0000753	SO:0000103	SOFA	"The region of sequence that has been inserted and is being propagated by the clone." [SO:ke]	SO:0000103	"The end of the clone insert." [SO:ke]	489657	SOFA	SOFA	sequence	1	SO	clone_insert	clone_insert_end
SO:0000110	SO:0000699	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000103	"The end of the clone insert." [SO:ke]	1072069	SOFA	SOFA	sequence	2	SO	sequence_feature	clone_insert_end
SO:0000151	SO:0000753	SOFA	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0000103	"The end of the clone insert." [SO:ke]	1072070	SOFA	SOFA	sequence	2	SO	clone	clone_insert_end
SO:0000695	SO:0000753	SOFA	"A sequence used in experiment." [SO:ke]	SO:0000103	"The end of the clone insert." [SO:ke]	1072071	SOFA	SOFA	sequence	2	SO	reagent	clone_insert_end
SO:0000695	SO:0000151	SOFA	"A sequence used in experiment." [SO:ke]	SO:0000103	"The end of the clone insert." [SO:ke]	1903090	SOFA	SOFA	sequence	3	SO	reagent	clone_insert_end
SO:0001409	SO:0000695	SOFA	"A region which is intended for use in an experiment." [SO:cb]	SO:0000103	"The end of the clone insert." [SO:ke]	2927576	SOFA	SOFA	sequence	4	SO	biomaterial_region	clone_insert_end
SO:0000001	SO:0001409	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000103	"The end of the clone insert." [SO:ke]	3173857	SOFA	SOFA	sequence	5	SO	region	clone_insert_end
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000103	"The end of the clone insert." [SO:ke]	4385702	SOFA	SOFA	sequence	6	SO	sequence_feature	clone_insert_end
SO:0000104	\N	SOFA	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0000104	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	45081	\N	SOFA	sequence	0	SO	polypeptide	polypeptide
SO:0001411	SO:0000104	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000104	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	489658	SOFA	SOFA	sequence	1	SO	biological_region	polypeptide
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000104	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	1072072	SOFA	SOFA	sequence	2	SO	region	polypeptide
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000104	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	1903092	SOFA	SOFA	sequence	3	SO	sequence_feature	polypeptide
SO:0000105	\N	\N	"A region of the chromosome between the centromere and the telomere. Human chromosomes have two arms, the p arm (short) and the q arm (long) which are separated from each other by the centromere." [http://www.medterms.com/script/main/art.asp?articlekey=5152]	SO:0000105	"A region of the chromosome between the centromere and the telomere. Human chromosomes have two arms, the p arm (short) and the q arm (long) which are separated from each other by the centromere." [http://www.medterms.com/script/main/art.asp?articlekey=5152]	45082	\N	\N	sequence	0	SO	chromosome_arm	chromosome_arm
SO:0000830	SO:0000105	\N	"A region of a chromosome." [SO:ke]	SO:0000105	"A region of the chromosome between the centromere and the telomere. Human chromosomes have two arms, the p arm (short) and the q arm (long) which are separated from each other by the centromere." [http://www.medterms.com/script/main/art.asp?articlekey=5152]	489659	\N	SOFA	sequence	1	SO	chromosome_part	chromosome_arm
SO:0000340	SO:0000830	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000105	"A region of the chromosome between the centromere and the telomere. Human chromosomes have two arms, the p arm (short) and the q arm (long) which are separated from each other by the centromere." [http://www.medterms.com/script/main/art.asp?articlekey=5152]	1072073	SOFA	SOFA	sequence	2	SO	chromosome	chromosome_arm
SO:0001411	SO:0000830	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000105	"A region of the chromosome between the centromere and the telomere. Human chromosomes have two arms, the p arm (short) and the q arm (long) which are separated from each other by the centromere." [http://www.medterms.com/script/main/art.asp?articlekey=5152]	1072074	SOFA	SOFA	sequence	2	SO	biological_region	chromosome_arm
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000105	"A region of the chromosome between the centromere and the telomere. Human chromosomes have two arms, the p arm (short) and the q arm (long) which are separated from each other by the centromere." [http://www.medterms.com/script/main/art.asp?articlekey=5152]	1903093	SOFA	SOFA	sequence	3	SO	replicon	chromosome_arm
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000105	"A region of the chromosome between the centromere and the telomere. Human chromosomes have two arms, the p arm (short) and the q arm (long) which are separated from each other by the centromere." [http://www.medterms.com/script/main/art.asp?articlekey=5152]	4001010	SOFA	SOFA	sequence	5	SO	region	chromosome_arm
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000105	"A region of the chromosome between the centromere and the telomere. Human chromosomes have two arms, the p arm (short) and the q arm (long) which are separated from each other by the centromere." [http://www.medterms.com/script/main/art.asp?articlekey=5152]	2927578	SOFA	SOFA	sequence	4	SO	biological_region	chromosome_arm
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000105	"A region of the chromosome between the centromere and the telomere. Human chromosomes have two arms, the p arm (short) and the q arm (long) which are separated from each other by the centromere." [http://www.medterms.com/script/main/art.asp?articlekey=5152]	4132272	SOFA	SOFA	sequence	6	SO	sequence_feature	chromosome_arm
SO:0000107	\N	\N	"" []	SO:0000107	"" []	45083	\N	\N	sequence	0	SO	sequencing_primer	sequencing_primer
SO:0000112	SO:0000107	\N	"An oligo to which new deoxyribonucleotides can be added by DNA polymerase." [SO:ke]	SO:0000107	"" []	489660	\N	SOFA	sequence	1	SO	primer	sequencing_primer
SO:0000441	SO:0000112	\N	"A single stranded oligonucleotide." [SO:ke]	SO:0000107	"" []	1072075	SOFA	SOFA	sequence	2	SO	ss_oligo	sequencing_primer
SO:0000696	SO:0000441	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0000107	"" []	1903095	SOFA	SOFA	sequence	3	SO	oligo	sequencing_primer
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0000107	"" []	2927580	SOFA	SOFA	sequence	4	SO	reagent	sequencing_primer
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000107	"" []	4001011	SOFA	SOFA	sequence	5	SO	biomaterial_region	sequencing_primer
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000107	"" []	4965677	SOFA	SOFA	sequence	6	SO	region	sequencing_primer
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000107	"" []	5740707	SOFA	SOFA	sequence	7	SO	sequence_feature	sequencing_primer
SO:0000108	\N	\N	"An mRNA with a frameshift." [SO:xp]	SO:0000108	"An mRNA with a frameshift." [SO:xp]	45084	\N	\N	sequence	0	SO	mRNA_with_frameshift	mRNA_with_frameshift
SO:0000234	SO:0000108	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000108	"An mRNA with a frameshift." [SO:xp]	489661	\N	SOFA	sequence	1	SO	mRNA	mRNA_with_frameshift
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000108	"An mRNA with a frameshift." [SO:xp]	1072076	SOFA	SOFA	sequence	2	SO	mature_transcript	mRNA_with_frameshift
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000108	"An mRNA with a frameshift." [SO:xp]	1903096	SOFA	SOFA	sequence	3	SO	transcript	mRNA_with_frameshift
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000108	"An mRNA with a frameshift." [SO:xp]	2927581	SOFA	SOFA	sequence	4	SO	gene_member_region	mRNA_with_frameshift
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000108	"An mRNA with a frameshift." [SO:xp]	4001012	SOFA	SOFA	sequence	5	SO	biological_region	mRNA_with_frameshift
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000108	"An mRNA with a frameshift." [SO:xp]	4965678	SOFA	SOFA	sequence	6	SO	region	mRNA_with_frameshift
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000108	"An mRNA with a frameshift." [SO:xp]	5740708	SOFA	SOFA	sequence	7	SO	sequence_feature	mRNA_with_frameshift
SO:0000110	\N	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000110	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	45085	\N	SOFA	sequence	0	SO	sequence_feature	sequence_feature
SO:0000111	\N	\N	"A gene encoded within a transposable element. For example gag, int, env and pol are the transposable element genes of the TY element in yeast." [SO:ke]	SO:0000111	"A gene encoded within a transposable element. For example gag, int, env and pol are the transposable element genes of the TY element in yeast." [SO:ke]	45086	\N	\N	sequence	0	SO	transposable_element_gene	transposable_element_gene
SO:0000101	SO:0000111	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000111	"A gene encoded within a transposable element. For example gag, int, env and pol are the transposable element genes of the TY element in yeast." [SO:ke]	489662	\N	SOFA	sequence	1	SO	transposable_element	transposable_element_gene
SO:0000704	SO:0000111	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000111	"A gene encoded within a transposable element. For example gag, int, env and pol are the transposable element genes of the TY element in yeast." [SO:ke]	489663	\N	SOFA	sequence	1	SO	gene	transposable_element_gene
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000111	"A gene encoded within a transposable element. For example gag, int, env and pol are the transposable element genes of the TY element in yeast." [SO:ke]	1072077	SOFA	SOFA	sequence	2	SO	integrated_mobile_genetic_element	transposable_element_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000111	"A gene encoded within a transposable element. For example gag, int, env and pol are the transposable element genes of the TY element in yeast." [SO:ke]	1072078	SOFA	SOFA	sequence	2	SO	biological_region	transposable_element_gene
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000111	"A gene encoded within a transposable element. For example gag, int, env and pol are the transposable element genes of the TY element in yeast." [SO:ke]	1903097	SOFA	SOFA	sequence	3	SO	mobile_genetic_element	transposable_element_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000111	"A gene encoded within a transposable element. For example gag, int, env and pol are the transposable element genes of the TY element in yeast." [SO:ke]	4001013	SOFA	SOFA	sequence	5	SO	region	transposable_element_gene
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000111	"A gene encoded within a transposable element. For example gag, int, env and pol are the transposable element genes of the TY element in yeast." [SO:ke]	2927582	SOFA	SOFA	sequence	4	SO	biological_region	transposable_element_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000111	"A gene encoded within a transposable element. For example gag, int, env and pol are the transposable element genes of the TY element in yeast." [SO:ke]	4132273	SOFA	SOFA	sequence	6	SO	sequence_feature	transposable_element_gene
SO:0000112	\N	SOFA	"An oligo to which new deoxyribonucleotides can be added by DNA polymerase." [SO:ke]	SO:0000112	"An oligo to which new deoxyribonucleotides can be added by DNA polymerase." [SO:ke]	45087	\N	SOFA	sequence	0	SO	primer	primer
SO:0000441	SO:0000112	SOFA	"A single stranded oligonucleotide." [SO:ke]	SO:0000112	"An oligo to which new deoxyribonucleotides can be added by DNA polymerase." [SO:ke]	489664	SOFA	SOFA	sequence	1	SO	ss_oligo	primer
SO:0000696	SO:0000441	SOFA	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0000112	"An oligo to which new deoxyribonucleotides can be added by DNA polymerase." [SO:ke]	1072079	SOFA	SOFA	sequence	2	SO	oligo	primer
SO:0000695	SO:0000696	SOFA	"A sequence used in experiment." [SO:ke]	SO:0000112	"An oligo to which new deoxyribonucleotides can be added by DNA polymerase." [SO:ke]	1903099	SOFA	SOFA	sequence	3	SO	reagent	primer
SO:0001409	SO:0000695	SOFA	"A region which is intended for use in an experiment." [SO:cb]	SO:0000112	"An oligo to which new deoxyribonucleotides can be added by DNA polymerase." [SO:ke]	2927584	SOFA	SOFA	sequence	4	SO	biomaterial_region	primer
SO:0000001	SO:0001409	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000112	"An oligo to which new deoxyribonucleotides can be added by DNA polymerase." [SO:ke]	4001014	SOFA	SOFA	sequence	5	SO	region	primer
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000112	"An oligo to which new deoxyribonucleotides can be added by DNA polymerase." [SO:ke]	4965679	SOFA	SOFA	sequence	6	SO	sequence_feature	primer
SO:0000113	\N	SOFA	"A viral sequence which has integrated into a host genome." [SO:ke]	SO:0000113	"A viral sequence which has integrated into a host genome." [SO:ke]	45088	\N	SOFA	sequence	0	SO	proviral_region	proviral_region
SO:0001039	SO:0000113	SOFA	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000113	"A viral sequence which has integrated into a host genome." [SO:ke]	489665	SOFA	SOFA	sequence	1	SO	integrated_mobile_genetic_element	proviral_region
SO:0001037	SO:0001039	SOFA	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000113	"A viral sequence which has integrated into a host genome." [SO:ke]	1072080	SOFA	SOFA	sequence	2	SO	mobile_genetic_element	proviral_region
SO:0001411	SO:0001037	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000113	"A viral sequence which has integrated into a host genome." [SO:ke]	1903100	SOFA	SOFA	sequence	3	SO	biological_region	proviral_region
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000113	"A viral sequence which has integrated into a host genome." [SO:ke]	2927585	SOFA	SOFA	sequence	4	SO	region	proviral_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000113	"A viral sequence which has integrated into a host genome." [SO:ke]	4001015	SOFA	SOFA	sequence	5	SO	sequence_feature	proviral_region
SO:0000114	\N	SOFA	"A methylated deoxy-cytosine." [SO:ke]	SO:0000114	"A methylated deoxy-cytosine." [SO:ke]	45089	\N	SOFA	sequence	0	SO	methylated_cytosine	methylated_cytosine
SO:0000306	SO:0000114	SOFA	"A nucleotide modified by methylation." [SO:ke]	SO:0000114	"A methylated deoxy-cytosine." [SO:ke]	489666	SOFA	SOFA	sequence	1	SO	methylated_DNA_base_feature	methylated_cytosine
SO:0001963	SO:0000114	SOFA	"A modified cytosine DNA base feature." [SO:ke]	SO:0000114	"A methylated deoxy-cytosine." [SO:ke]	489667	SOFA	\N	sequence	1	SO	modified_cytosine	methylated_cytosine
SO:0000305	SO:0000306	SOFA	"A modified nucleotide, i.e. a nucleotide other than A, T, C. G." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000114	"A methylated deoxy-cytosine." [SO:ke]	1072081	SOFA	SOFA	sequence	2	SO	modified_DNA_base	methylated_cytosine
SO:0000305	SO:0001963	SOFA	"A modified nucleotide, i.e. a nucleotide other than A, T, C. G." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000114	"A methylated deoxy-cytosine." [SO:ke]	1072082	\N	SOFA	sequence	2	SO	modified_DNA_base	methylated_cytosine
SO:0001236	SO:0000305	SOFA	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0000114	"A methylated deoxy-cytosine." [SO:ke]	1903101	SOFA	SOFA	sequence	3	SO	base	methylated_cytosine
SO:0001720	SO:0000305	SOFA	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0000114	"A methylated deoxy-cytosine." [SO:ke]	1903102	SOFA	SOFA	sequence	3	SO	epigenetically_modified_region	methylated_cytosine
SO:0001411	SO:0001236	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000114	"A methylated deoxy-cytosine." [SO:ke]	2927586	SOFA	SOFA	sequence	4	SO	biological_region	methylated_cytosine
SO:0001411	SO:0001720	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000114	"A methylated deoxy-cytosine." [SO:ke]	2927587	SOFA	SOFA	sequence	4	SO	biological_region	methylated_cytosine
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000114	"A methylated deoxy-cytosine." [SO:ke]	4001016	SOFA	SOFA	sequence	5	SO	region	methylated_cytosine
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000114	"A methylated deoxy-cytosine." [SO:ke]	4965680	SOFA	SOFA	sequence	6	SO	sequence_feature	methylated_cytosine
SO:0000116	\N	\N	"An attribute describing a sequence that is modified by editing." [SO:ke]	SO:0000116	"An attribute describing a sequence that is modified by editing." [SO:ke]	45090	\N	\N	sequence	0	SO	edited	edited
SO:0000237	SO:0000116	\N	"" []	SO:0000116	"An attribute describing a sequence that is modified by editing." [SO:ke]	489668	\N	\N	sequence	1	SO	transcript_attribute	edited
SO:0000733	SO:0000237	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000116	"An attribute describing a sequence that is modified by editing." [SO:ke]	1072083	\N	\N	sequence	2	SO	feature_attribute	edited
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000116	"An attribute describing a sequence that is modified by editing." [SO:ke]	1903103	\N	\N	sequence	3	SO	sequence_attribute	edited
SO:0000118	\N	\N	"A transcript with a translational frameshift." [SO:xp]	SO:0000118	"A transcript with a translational frameshift." [SO:xp]	45091	\N	\N	sequence	0	SO	transcript_with_translational_frameshift	transcript_with_translational_frameshift
SO:0000673	SO:0000118	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000118	"A transcript with a translational frameshift." [SO:xp]	489669	\N	SOFA	sequence	1	SO	transcript	transcript_with_translational_frameshift
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000118	"A transcript with a translational frameshift." [SO:xp]	1072084	SOFA	SOFA	sequence	2	SO	gene_member_region	transcript_with_translational_frameshift
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000118	"A transcript with a translational frameshift." [SO:xp]	1903104	SOFA	SOFA	sequence	3	SO	biological_region	transcript_with_translational_frameshift
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000118	"A transcript with a translational frameshift." [SO:xp]	2927588	SOFA	SOFA	sequence	4	SO	region	transcript_with_translational_frameshift
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000118	"A transcript with a translational frameshift." [SO:xp]	4001017	SOFA	SOFA	sequence	5	SO	sequence_feature	transcript_with_translational_frameshift
SO:0000119	\N	\N	"An attribute to describe a sequence that is regulated." [SO:ke]	SO:0000119	"An attribute to describe a sequence that is regulated." [SO:ke]	45092	\N	\N	sequence	0	SO	regulated	regulated
SO:0000401	SO:0000119	\N	"" []	SO:0000119	"An attribute to describe a sequence that is regulated." [SO:ke]	489670	\N	\N	sequence	1	SO	gene_attribute	regulated
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000119	"An attribute to describe a sequence that is regulated." [SO:ke]	1072085	\N	\N	sequence	2	SO	feature_attribute	regulated
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000119	"An attribute to describe a sequence that is regulated." [SO:ke]	1903105	\N	\N	sequence	3	SO	sequence_attribute	regulated
SO:0000120	\N	SOFA	"A primary transcript that, at least in part, encodes one or more proteins." [SO:ke]	SO:0000120	"A primary transcript that, at least in part, encodes one or more proteins." [SO:ke]	45093	\N	SOFA	sequence	0	SO	protein_coding_primary_transcript	protein_coding_primary_transcript
SO:0000185	SO:0000120	SOFA	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000120	"A primary transcript that, at least in part, encodes one or more proteins." [SO:ke]	489671	SOFA	SOFA	sequence	1	SO	primary_transcript	protein_coding_primary_transcript
SO:0000673	SO:0000185	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000120	"A primary transcript that, at least in part, encodes one or more proteins." [SO:ke]	1072086	SOFA	SOFA	sequence	2	SO	transcript	protein_coding_primary_transcript
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000120	"A primary transcript that, at least in part, encodes one or more proteins." [SO:ke]	1903106	SOFA	SOFA	sequence	3	SO	gene_member_region	protein_coding_primary_transcript
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000120	"A primary transcript that, at least in part, encodes one or more proteins." [SO:ke]	2927589	SOFA	SOFA	sequence	4	SO	biological_region	protein_coding_primary_transcript
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000120	"A primary transcript that, at least in part, encodes one or more proteins." [SO:ke]	4001018	SOFA	SOFA	sequence	5	SO	region	protein_coding_primary_transcript
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000120	"A primary transcript that, at least in part, encodes one or more proteins." [SO:ke]	4965681	SOFA	SOFA	sequence	6	SO	sequence_feature	protein_coding_primary_transcript
SO:0000121	\N	\N	"A single stranded oligo used for polymerase chain reaction." [http://mged.sourceforge.net/ontologies/MGEDontology.php]	SO:0000121	"A single stranded oligo used for polymerase chain reaction." [http://mged.sourceforge.net/ontologies/MGEDontology.php]	45094	\N	\N	sequence	0	SO	forward_primer	forward_primer
SO:0000112	SO:0000121	\N	"An oligo to which new deoxyribonucleotides can be added by DNA polymerase." [SO:ke]	SO:0000121	"A single stranded oligo used for polymerase chain reaction." [http://mged.sourceforge.net/ontologies/MGEDontology.php]	489672	\N	SOFA	sequence	1	SO	primer	forward_primer
SO:0000441	SO:0000112	\N	"A single stranded oligonucleotide." [SO:ke]	SO:0000121	"A single stranded oligo used for polymerase chain reaction." [http://mged.sourceforge.net/ontologies/MGEDontology.php]	1072087	SOFA	SOFA	sequence	2	SO	ss_oligo	forward_primer
SO:0000696	SO:0000441	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0000121	"A single stranded oligo used for polymerase chain reaction." [http://mged.sourceforge.net/ontologies/MGEDontology.php]	1903107	SOFA	SOFA	sequence	3	SO	oligo	forward_primer
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0000121	"A single stranded oligo used for polymerase chain reaction." [http://mged.sourceforge.net/ontologies/MGEDontology.php]	2927590	SOFA	SOFA	sequence	4	SO	reagent	forward_primer
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000121	"A single stranded oligo used for polymerase chain reaction." [http://mged.sourceforge.net/ontologies/MGEDontology.php]	4001019	SOFA	SOFA	sequence	5	SO	biomaterial_region	forward_primer
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000121	"A single stranded oligo used for polymerase chain reaction." [http://mged.sourceforge.net/ontologies/MGEDontology.php]	4965682	SOFA	SOFA	sequence	6	SO	region	forward_primer
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000121	"A single stranded oligo used for polymerase chain reaction." [http://mged.sourceforge.net/ontologies/MGEDontology.php]	5740709	SOFA	SOFA	sequence	7	SO	sequence_feature	forward_primer
SO:0000122	\N	\N	"A folded RNA sequence." [SO:ke]	SO:0000122	"A folded RNA sequence." [SO:ke]	45095	\N	\N	sequence	0	SO	RNA_sequence_secondary_structure	RNA_sequence_secondary_structure
SO:0000002	SO:0000122	\N	"A folded sequence." [SO:ke]	SO:0000122	"A folded RNA sequence." [SO:ke]	489673	\N	\N	sequence	1	SO	sequence_secondary_structure	RNA_sequence_secondary_structure
SO:0001411	SO:0000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000122	"A folded RNA sequence." [SO:ke]	1072088	\N	SOFA	sequence	2	SO	biological_region	RNA_sequence_secondary_structure
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000122	"A folded RNA sequence." [SO:ke]	1903108	SOFA	SOFA	sequence	3	SO	region	RNA_sequence_secondary_structure
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000122	"A folded RNA sequence." [SO:ke]	2927591	SOFA	SOFA	sequence	4	SO	sequence_feature	RNA_sequence_secondary_structure
SO:0000123	\N	\N	"An attribute describing a gene that is regulated at transcription." [SO:ma]	SO:0000123	"An attribute describing a gene that is regulated at transcription." [SO:ma]	45096	\N	\N	sequence	0	SO	transcriptionally_regulated	transcriptionally_regulated
SO:0000119	SO:0000123	\N	"An attribute to describe a sequence that is regulated." [SO:ke]	SO:0000123	"An attribute describing a gene that is regulated at transcription." [SO:ma]	489674	\N	\N	sequence	1	SO	regulated	transcriptionally_regulated
SO:0000401	SO:0000119	\N	"" []	SO:0000123	"An attribute describing a gene that is regulated at transcription." [SO:ma]	1072089	\N	\N	sequence	2	SO	gene_attribute	transcriptionally_regulated
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000123	"An attribute describing a gene that is regulated at transcription." [SO:ma]	1903109	\N	\N	sequence	3	SO	feature_attribute	transcriptionally_regulated
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000123	"An attribute describing a gene that is regulated at transcription." [SO:ma]	2927592	\N	\N	sequence	4	SO	sequence_attribute	transcriptionally_regulated
SO:0000124	\N	\N	"Expressed in relatively constant amounts without regard to cellular environmental conditions such as the concentration of a particular substrate." [SO:ke]	SO:0000124	"Expressed in relatively constant amounts without regard to cellular environmental conditions such as the concentration of a particular substrate." [SO:ke]	45097	\N	\N	sequence	0	SO	transcriptionally_constitutive	transcriptionally_constitutive
SO:0000123	SO:0000124	\N	"An attribute describing a gene that is regulated at transcription." [SO:ma]	SO:0000124	"Expressed in relatively constant amounts without regard to cellular environmental conditions such as the concentration of a particular substrate." [SO:ke]	489675	\N	\N	sequence	1	SO	transcriptionally_regulated	transcriptionally_constitutive
SO:0000119	SO:0000123	\N	"An attribute to describe a sequence that is regulated." [SO:ke]	SO:0000124	"Expressed in relatively constant amounts without regard to cellular environmental conditions such as the concentration of a particular substrate." [SO:ke]	1072090	\N	\N	sequence	2	SO	regulated	transcriptionally_constitutive
SO:0000401	SO:0000119	\N	"" []	SO:0000124	"Expressed in relatively constant amounts without regard to cellular environmental conditions such as the concentration of a particular substrate." [SO:ke]	1903110	\N	\N	sequence	3	SO	gene_attribute	transcriptionally_constitutive
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000124	"Expressed in relatively constant amounts without regard to cellular environmental conditions such as the concentration of a particular substrate." [SO:ke]	2927593	\N	\N	sequence	4	SO	feature_attribute	transcriptionally_constitutive
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000124	"Expressed in relatively constant amounts without regard to cellular environmental conditions such as the concentration of a particular substrate." [SO:ke]	4001020	\N	\N	sequence	5	SO	sequence_attribute	transcriptionally_constitutive
SO:0000125	\N	\N	"An inducer molecule is required for transcription to occur." [SO:ke]	SO:0000125	"An inducer molecule is required for transcription to occur." [SO:ke]	45098	\N	\N	sequence	0	SO	transcriptionally_induced	transcriptionally_induced
SO:0000123	SO:0000125	\N	"An attribute describing a gene that is regulated at transcription." [SO:ma]	SO:0000125	"An inducer molecule is required for transcription to occur." [SO:ke]	489676	\N	\N	sequence	1	SO	transcriptionally_regulated	transcriptionally_induced
SO:0000119	SO:0000123	\N	"An attribute to describe a sequence that is regulated." [SO:ke]	SO:0000125	"An inducer molecule is required for transcription to occur." [SO:ke]	1072091	\N	\N	sequence	2	SO	regulated	transcriptionally_induced
SO:0000401	SO:0000119	\N	"" []	SO:0000125	"An inducer molecule is required for transcription to occur." [SO:ke]	1903111	\N	\N	sequence	3	SO	gene_attribute	transcriptionally_induced
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000125	"An inducer molecule is required for transcription to occur." [SO:ke]	2927594	\N	\N	sequence	4	SO	feature_attribute	transcriptionally_induced
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000125	"An inducer molecule is required for transcription to occur." [SO:ke]	4001021	\N	\N	sequence	5	SO	sequence_attribute	transcriptionally_induced
SO:0000126	\N	\N	"A repressor molecule is required for transcription to stop." [SO:ke]	SO:0000126	"A repressor molecule is required for transcription to stop." [SO:ke]	45099	\N	\N	sequence	0	SO	transcriptionally_repressed	transcriptionally_repressed
SO:0000123	SO:0000126	\N	"An attribute describing a gene that is regulated at transcription." [SO:ma]	SO:0000126	"A repressor molecule is required for transcription to stop." [SO:ke]	489677	\N	\N	sequence	1	SO	transcriptionally_regulated	transcriptionally_repressed
SO:0000119	SO:0000123	\N	"An attribute to describe a sequence that is regulated." [SO:ke]	SO:0000126	"A repressor molecule is required for transcription to stop." [SO:ke]	1072092	\N	\N	sequence	2	SO	regulated	transcriptionally_repressed
SO:0000401	SO:0000119	\N	"" []	SO:0000126	"A repressor molecule is required for transcription to stop." [SO:ke]	1903112	\N	\N	sequence	3	SO	gene_attribute	transcriptionally_repressed
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000126	"A repressor molecule is required for transcription to stop." [SO:ke]	2927595	\N	\N	sequence	4	SO	feature_attribute	transcriptionally_repressed
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000126	"A repressor molecule is required for transcription to stop." [SO:ke]	4001022	\N	\N	sequence	5	SO	sequence_attribute	transcriptionally_repressed
SO:0000127	\N	\N	"A gene that is silenced." [SO:xp]	SO:0000127	"A gene that is silenced." [SO:xp]	45100	\N	\N	sequence	0	SO	silenced_gene	silenced_gene
SO:0000704	SO:0000127	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000127	"A gene that is silenced." [SO:xp]	489678	\N	SOFA	sequence	1	SO	gene	silenced_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000127	"A gene that is silenced." [SO:xp]	1072093	SOFA	SOFA	sequence	2	SO	biological_region	silenced_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000127	"A gene that is silenced." [SO:xp]	1903113	SOFA	SOFA	sequence	3	SO	region	silenced_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000127	"A gene that is silenced." [SO:xp]	2927596	SOFA	SOFA	sequence	4	SO	sequence_feature	silenced_gene
SO:0000128	\N	\N	"A gene that is silenced by DNA modification." [SO:xp]	SO:0000128	"A gene that is silenced by DNA modification." [SO:xp]	45101	\N	\N	sequence	0	SO	gene_silenced_by_DNA_modification	gene_silenced_by_DNA_modification
SO:0000127	SO:0000128	\N	"A gene that is silenced." [SO:xp]	SO:0000128	"A gene that is silenced by DNA modification." [SO:xp]	489679	\N	\N	sequence	1	SO	silenced_gene	gene_silenced_by_DNA_modification
SO:0000704	SO:0000127	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000128	"A gene that is silenced by DNA modification." [SO:xp]	1072094	\N	SOFA	sequence	2	SO	gene	gene_silenced_by_DNA_modification
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000128	"A gene that is silenced by DNA modification." [SO:xp]	1903114	SOFA	SOFA	sequence	3	SO	biological_region	gene_silenced_by_DNA_modification
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000128	"A gene that is silenced by DNA modification." [SO:xp]	2927597	SOFA	SOFA	sequence	4	SO	region	gene_silenced_by_DNA_modification
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000128	"A gene that is silenced by DNA modification." [SO:xp]	4001023	SOFA	SOFA	sequence	5	SO	sequence_feature	gene_silenced_by_DNA_modification
SO:0000129	\N	\N	"A gene that is silenced by DNA methylation." [SO:xp]	SO:0000129	"A gene that is silenced by DNA methylation." [SO:xp]	45102	\N	\N	sequence	0	SO	gene_silenced_by_DNA_methylation	gene_silenced_by_DNA_methylation
SO:0000128	SO:0000129	\N	"A gene that is silenced by DNA modification." [SO:xp]	SO:0000129	"A gene that is silenced by DNA methylation." [SO:xp]	489680	\N	\N	sequence	1	SO	gene_silenced_by_DNA_modification	gene_silenced_by_DNA_methylation
SO:0000127	SO:0000128	\N	"A gene that is silenced." [SO:xp]	SO:0000129	"A gene that is silenced by DNA methylation." [SO:xp]	1072095	\N	\N	sequence	2	SO	silenced_gene	gene_silenced_by_DNA_methylation
SO:0000704	SO:0000127	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000129	"A gene that is silenced by DNA methylation." [SO:xp]	1903115	\N	SOFA	sequence	3	SO	gene	gene_silenced_by_DNA_methylation
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000129	"A gene that is silenced by DNA methylation." [SO:xp]	2927598	SOFA	SOFA	sequence	4	SO	biological_region	gene_silenced_by_DNA_methylation
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000129	"A gene that is silenced by DNA methylation." [SO:xp]	4001024	SOFA	SOFA	sequence	5	SO	region	gene_silenced_by_DNA_methylation
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000129	"A gene that is silenced by DNA methylation." [SO:xp]	4965683	SOFA	SOFA	sequence	6	SO	sequence_feature	gene_silenced_by_DNA_methylation
SO:0000130	\N	\N	"An attribute describing a gene that is regulated after it has been translated." [SO:ke]	SO:0000130	"An attribute describing a gene that is regulated after it has been translated." [SO:ke]	45103	\N	\N	sequence	0	SO	post_translationally_regulated	post_translationally_regulated
SO:0000119	SO:0000130	\N	"An attribute to describe a sequence that is regulated." [SO:ke]	SO:0000130	"An attribute describing a gene that is regulated after it has been translated." [SO:ke]	489681	\N	\N	sequence	1	SO	regulated	post_translationally_regulated
SO:0000401	SO:0000119	\N	"" []	SO:0000130	"An attribute describing a gene that is regulated after it has been translated." [SO:ke]	1072096	\N	\N	sequence	2	SO	gene_attribute	post_translationally_regulated
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000130	"An attribute describing a gene that is regulated after it has been translated." [SO:ke]	1903116	\N	\N	sequence	3	SO	feature_attribute	post_translationally_regulated
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000130	"An attribute describing a gene that is regulated after it has been translated." [SO:ke]	2927599	\N	\N	sequence	4	SO	sequence_attribute	post_translationally_regulated
SO:0000131	\N	\N	"An attribute describing a gene that is regulated as it is translated." [SO:ke]	SO:0000131	"An attribute describing a gene that is regulated as it is translated." [SO:ke]	45104	\N	\N	sequence	0	SO	translationally_regulated	translationally_regulated
SO:0000119	SO:0000131	\N	"An attribute to describe a sequence that is regulated." [SO:ke]	SO:0000131	"An attribute describing a gene that is regulated as it is translated." [SO:ke]	489682	\N	\N	sequence	1	SO	regulated	translationally_regulated
SO:0000401	SO:0000119	\N	"" []	SO:0000131	"An attribute describing a gene that is regulated as it is translated." [SO:ke]	1072097	\N	\N	sequence	2	SO	gene_attribute	translationally_regulated
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000131	"An attribute describing a gene that is regulated as it is translated." [SO:ke]	1903117	\N	\N	sequence	3	SO	feature_attribute	translationally_regulated
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000131	"An attribute describing a gene that is regulated as it is translated." [SO:ke]	2927600	\N	\N	sequence	4	SO	sequence_attribute	translationally_regulated
SO:0000132	\N	\N	"A single stranded oligo used for polymerase chain reaction." [http://mged.sourceforge.net/ontologies/MGEDontology.php]	SO:0000132	"A single stranded oligo used for polymerase chain reaction." [http://mged.sourceforge.net/ontologies/MGEDontology.php]	45105	\N	\N	sequence	0	SO	reverse_primer	reverse_primer
SO:0000112	SO:0000132	\N	"An oligo to which new deoxyribonucleotides can be added by DNA polymerase." [SO:ke]	SO:0000132	"A single stranded oligo used for polymerase chain reaction." [http://mged.sourceforge.net/ontologies/MGEDontology.php]	489683	\N	SOFA	sequence	1	SO	primer	reverse_primer
SO:0000441	SO:0000112	\N	"A single stranded oligonucleotide." [SO:ke]	SO:0000132	"A single stranded oligo used for polymerase chain reaction." [http://mged.sourceforge.net/ontologies/MGEDontology.php]	1072098	SOFA	SOFA	sequence	2	SO	ss_oligo	reverse_primer
SO:0000696	SO:0000441	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0000132	"A single stranded oligo used for polymerase chain reaction." [http://mged.sourceforge.net/ontologies/MGEDontology.php]	1903118	SOFA	SOFA	sequence	3	SO	oligo	reverse_primer
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0000132	"A single stranded oligo used for polymerase chain reaction." [http://mged.sourceforge.net/ontologies/MGEDontology.php]	2927601	SOFA	SOFA	sequence	4	SO	reagent	reverse_primer
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000132	"A single stranded oligo used for polymerase chain reaction." [http://mged.sourceforge.net/ontologies/MGEDontology.php]	4001025	SOFA	SOFA	sequence	5	SO	biomaterial_region	reverse_primer
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000132	"A single stranded oligo used for polymerase chain reaction." [http://mged.sourceforge.net/ontologies/MGEDontology.php]	4965684	SOFA	SOFA	sequence	6	SO	region	reverse_primer
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000132	"A single stranded oligo used for polymerase chain reaction." [http://mged.sourceforge.net/ontologies/MGEDontology.php]	5740710	SOFA	SOFA	sequence	7	SO	sequence_feature	reverse_primer
SO:0000133	\N	\N	"This attribute describes a gene where heritable changes other than those in the DNA sequence occur. These changes include: modification to the DNA (such as DNA methylation, the covalent modification of cytosine), and post-translational modification of histones." [SO:ke]	SO:0000133	"This attribute describes a gene where heritable changes other than those in the DNA sequence occur. These changes include: modification to the DNA (such as DNA methylation, the covalent modification of cytosine), and post-translational modification of histones." [SO:ke]	45106	\N	\N	sequence	0	SO	epigenetically_modified	epigenetically_modified
SO:0000401	SO:0000133	\N	"" []	SO:0000133	"This attribute describes a gene where heritable changes other than those in the DNA sequence occur. These changes include: modification to the DNA (such as DNA methylation, the covalent modification of cytosine), and post-translational modification of histones." [SO:ke]	489684	\N	\N	sequence	1	SO	gene_attribute	epigenetically_modified
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000133	"This attribute describes a gene where heritable changes other than those in the DNA sequence occur. These changes include: modification to the DNA (such as DNA methylation, the covalent modification of cytosine), and post-translational modification of histones." [SO:ke]	1072099	\N	\N	sequence	2	SO	feature_attribute	epigenetically_modified
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000133	"This attribute describes a gene where heritable changes other than those in the DNA sequence occur. These changes include: modification to the DNA (such as DNA methylation, the covalent modification of cytosine), and post-translational modification of histones." [SO:ke]	1903119	\N	\N	sequence	3	SO	sequence_attribute	epigenetically_modified
SO:0000134	\N	\N	"Imprinted genes are epigenetically modified genes that are expressed monoallelically according to their parent of origin." [SO:ke]	SO:0000134	"Imprinted genes are epigenetically modified genes that are expressed monoallelically according to their parent of origin." [SO:ke]	45107	\N	\N	sequence	0	SO	genomically_imprinted	genomically_imprinted
SO:0000119	SO:0000134	\N	"An attribute to describe a sequence that is regulated." [SO:ke]	SO:0000134	"Imprinted genes are epigenetically modified genes that are expressed monoallelically according to their parent of origin." [SO:ke]	489685	\N	\N	sequence	1	SO	regulated	genomically_imprinted
SO:0000133	SO:0000134	\N	"This attribute describes a gene where heritable changes other than those in the DNA sequence occur. These changes include: modification to the DNA (such as DNA methylation, the covalent modification of cytosine), and post-translational modification of histones." [SO:ke]	SO:0000134	"Imprinted genes are epigenetically modified genes that are expressed monoallelically according to their parent of origin." [SO:ke]	489686	\N	\N	sequence	1	SO	epigenetically_modified	genomically_imprinted
SO:0000401	SO:0000119	\N	"" []	SO:0000134	"Imprinted genes are epigenetically modified genes that are expressed monoallelically according to their parent of origin." [SO:ke]	1072100	\N	\N	sequence	2	SO	gene_attribute	genomically_imprinted
SO:0000401	SO:0000133	\N	"" []	SO:0000134	"Imprinted genes are epigenetically modified genes that are expressed monoallelically according to their parent of origin." [SO:ke]	1072101	\N	\N	sequence	2	SO	gene_attribute	genomically_imprinted
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000134	"Imprinted genes are epigenetically modified genes that are expressed monoallelically according to their parent of origin." [SO:ke]	1903120	\N	\N	sequence	3	SO	feature_attribute	genomically_imprinted
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000134	"Imprinted genes are epigenetically modified genes that are expressed monoallelically according to their parent of origin." [SO:ke]	2927602	\N	\N	sequence	4	SO	sequence_attribute	genomically_imprinted
SO:0000135	\N	\N	"The maternal copy of the gene is modified, rendering it transcriptionally silent." [SO:ke]	SO:0000135	"The maternal copy of the gene is modified, rendering it transcriptionally silent." [SO:ke]	45108	\N	\N	sequence	0	SO	maternally_imprinted	maternally_imprinted
SO:0000134	SO:0000135	\N	"Imprinted genes are epigenetically modified genes that are expressed monoallelically according to their parent of origin." [SO:ke]	SO:0000135	"The maternal copy of the gene is modified, rendering it transcriptionally silent." [SO:ke]	489687	\N	\N	sequence	1	SO	genomically_imprinted	maternally_imprinted
SO:0000119	SO:0000134	\N	"An attribute to describe a sequence that is regulated." [SO:ke]	SO:0000135	"The maternal copy of the gene is modified, rendering it transcriptionally silent." [SO:ke]	1072102	\N	\N	sequence	2	SO	regulated	maternally_imprinted
SO:0000133	SO:0000134	\N	"This attribute describes a gene where heritable changes other than those in the DNA sequence occur. These changes include: modification to the DNA (such as DNA methylation, the covalent modification of cytosine), and post-translational modification of histones." [SO:ke]	SO:0000135	"The maternal copy of the gene is modified, rendering it transcriptionally silent." [SO:ke]	1072103	\N	\N	sequence	2	SO	epigenetically_modified	maternally_imprinted
SO:0000401	SO:0000119	\N	"" []	SO:0000135	"The maternal copy of the gene is modified, rendering it transcriptionally silent." [SO:ke]	1903121	\N	\N	sequence	3	SO	gene_attribute	maternally_imprinted
SO:0000401	SO:0000133	\N	"" []	SO:0000135	"The maternal copy of the gene is modified, rendering it transcriptionally silent." [SO:ke]	1903122	\N	\N	sequence	3	SO	gene_attribute	maternally_imprinted
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000135	"The maternal copy of the gene is modified, rendering it transcriptionally silent." [SO:ke]	2927603	\N	\N	sequence	4	SO	feature_attribute	maternally_imprinted
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000135	"The maternal copy of the gene is modified, rendering it transcriptionally silent." [SO:ke]	4001026	\N	\N	sequence	5	SO	sequence_attribute	maternally_imprinted
SO:0000136	\N	\N	"The paternal copy of the gene is modified, rendering it transcriptionally silent." [SO:ke]	SO:0000136	"The paternal copy of the gene is modified, rendering it transcriptionally silent." [SO:ke]	45109	\N	\N	sequence	0	SO	paternally_imprinted	paternally_imprinted
SO:0000134	SO:0000136	\N	"Imprinted genes are epigenetically modified genes that are expressed monoallelically according to their parent of origin." [SO:ke]	SO:0000136	"The paternal copy of the gene is modified, rendering it transcriptionally silent." [SO:ke]	489688	\N	\N	sequence	1	SO	genomically_imprinted	paternally_imprinted
SO:0000119	SO:0000134	\N	"An attribute to describe a sequence that is regulated." [SO:ke]	SO:0000136	"The paternal copy of the gene is modified, rendering it transcriptionally silent." [SO:ke]	1072104	\N	\N	sequence	2	SO	regulated	paternally_imprinted
SO:0000133	SO:0000134	\N	"This attribute describes a gene where heritable changes other than those in the DNA sequence occur. These changes include: modification to the DNA (such as DNA methylation, the covalent modification of cytosine), and post-translational modification of histones." [SO:ke]	SO:0000136	"The paternal copy of the gene is modified, rendering it transcriptionally silent." [SO:ke]	1072105	\N	\N	sequence	2	SO	epigenetically_modified	paternally_imprinted
SO:0000401	SO:0000119	\N	"" []	SO:0000136	"The paternal copy of the gene is modified, rendering it transcriptionally silent." [SO:ke]	1903123	\N	\N	sequence	3	SO	gene_attribute	paternally_imprinted
SO:0000401	SO:0000133	\N	"" []	SO:0000136	"The paternal copy of the gene is modified, rendering it transcriptionally silent." [SO:ke]	1903124	\N	\N	sequence	3	SO	gene_attribute	paternally_imprinted
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000136	"The paternal copy of the gene is modified, rendering it transcriptionally silent." [SO:ke]	2927604	\N	\N	sequence	4	SO	feature_attribute	paternally_imprinted
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000136	"The paternal copy of the gene is modified, rendering it transcriptionally silent." [SO:ke]	4001027	\N	\N	sequence	5	SO	sequence_attribute	paternally_imprinted
SO:0000137	\N	\N	"Allelic exclusion is a process occurring in diploid organisms, where a gene is inactivated and not expressed in that cell." [SO:ke]	SO:0000137	"Allelic exclusion is a process occurring in diploid organisms, where a gene is inactivated and not expressed in that cell." [SO:ke]	45110	\N	\N	sequence	0	SO	allelically_excluded	allelically_excluded
SO:0000133	SO:0000137	\N	"This attribute describes a gene where heritable changes other than those in the DNA sequence occur. These changes include: modification to the DNA (such as DNA methylation, the covalent modification of cytosine), and post-translational modification of histones." [SO:ke]	SO:0000137	"Allelic exclusion is a process occurring in diploid organisms, where a gene is inactivated and not expressed in that cell." [SO:ke]	489689	\N	\N	sequence	1	SO	epigenetically_modified	allelically_excluded
SO:0000401	SO:0000133	\N	"" []	SO:0000137	"Allelic exclusion is a process occurring in diploid organisms, where a gene is inactivated and not expressed in that cell." [SO:ke]	1072106	\N	\N	sequence	2	SO	gene_attribute	allelically_excluded
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000137	"Allelic exclusion is a process occurring in diploid organisms, where a gene is inactivated and not expressed in that cell." [SO:ke]	1903125	\N	\N	sequence	3	SO	feature_attribute	allelically_excluded
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000137	"Allelic exclusion is a process occurring in diploid organisms, where a gene is inactivated and not expressed in that cell." [SO:ke]	2927605	\N	\N	sequence	4	SO	sequence_attribute	allelically_excluded
SO:0000138	\N	\N	"An epigenetically modified gene, rearranged at the DNA level." [SO:xp]	SO:0000138	"An epigenetically modified gene, rearranged at the DNA level." [SO:xp]	45111	\N	\N	sequence	0	SO	gene_rearranged_at_DNA_level	gene_rearranged_at_DNA_level
SO:0000898	SO:0000138	\N	"A gene that is epigenetically modified." [SO:ke]	SO:0000138	"An epigenetically modified gene, rearranged at the DNA level." [SO:xp]	489690	\N	\N	sequence	1	SO	epigenetically_modified_gene	gene_rearranged_at_DNA_level
SO:0000704	SO:0000898	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000138	"An epigenetically modified gene, rearranged at the DNA level." [SO:xp]	1072107	\N	SOFA	sequence	2	SO	gene	gene_rearranged_at_DNA_level
SO:0001720	SO:0000898	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0000138	"An epigenetically modified gene, rearranged at the DNA level." [SO:xp]	1072108	\N	SOFA	sequence	2	SO	epigenetically_modified_region	gene_rearranged_at_DNA_level
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000138	"An epigenetically modified gene, rearranged at the DNA level." [SO:xp]	1903126	SOFA	SOFA	sequence	3	SO	biological_region	gene_rearranged_at_DNA_level
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000138	"An epigenetically modified gene, rearranged at the DNA level." [SO:xp]	1903127	SOFA	SOFA	sequence	3	SO	biological_region	gene_rearranged_at_DNA_level
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000138	"An epigenetically modified gene, rearranged at the DNA level." [SO:xp]	2927606	SOFA	SOFA	sequence	4	SO	region	gene_rearranged_at_DNA_level
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000138	"An epigenetically modified gene, rearranged at the DNA level." [SO:xp]	4001028	SOFA	SOFA	sequence	5	SO	sequence_feature	gene_rearranged_at_DNA_level
SO:0000139	\N	SOFA	"Region in mRNA where ribosome assembles." [SO:ke]	SO:0000139	"Region in mRNA where ribosome assembles." [SO:ke]	45112	\N	SOFA	sequence	0	SO	ribosome_entry_site	ribosome_entry_site
SO:0000204	SO:0000139	SOFA	"A region at the 5' end of a mature transcript (preceding the initiation codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000139	"Region in mRNA where ribosome assembles." [SO:ke]	489691	SOFA	SOFA	sequence	1	SO	five_prime_UTR	ribosome_entry_site
SO:0000836	SO:0000139	SOFA	"A region of an mRNA." [SO:cb]	SO:0000139	"Region in mRNA where ribosome assembles." [SO:ke]	489692	SOFA	SOFA	sequence	1	SO	mRNA_region	ribosome_entry_site
SO:0000203	SO:0000204	SOFA	"Messenger RNA sequences that are untranslated and lie five prime or three prime to sequences which are translated." [SO:ke]	SO:0000139	"Region in mRNA where ribosome assembles." [SO:ke]	1072109	SOFA	SOFA	sequence	2	SO	UTR	ribosome_entry_site
SO:0000234	SO:0000836	SOFA	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000139	"Region in mRNA where ribosome assembles." [SO:ke]	2927607	SOFA	SOFA	sequence	4	SO	mRNA	ribosome_entry_site
SO:0000834	SO:0000836	SOFA	"A region of a mature transcript." [SO:ke]	SO:0000139	"Region in mRNA where ribosome assembles." [SO:ke]	2927608	SOFA	SOFA	sequence	4	SO	mature_transcript_region	ribosome_entry_site
SO:0000836	SO:0000203	SOFA	"A region of an mRNA." [SO:cb]	SO:0000139	"Region in mRNA where ribosome assembles." [SO:ke]	1903128	SOFA	SOFA	sequence	3	SO	mRNA_region	ribosome_entry_site
SO:0000233	SO:0000234	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000139	"Region in mRNA where ribosome assembles." [SO:ke]	2999115	SOFA	SOFA	sequence	5	SO	mature_transcript	ribosome_entry_site
SO:0000833	SO:0000834	SOFA	"A region of a transcript." [SO:ke]	SO:0000139	"Region in mRNA where ribosome assembles." [SO:ke]	2999116	SOFA	SOFA	sequence	5	SO	transcript_region	ribosome_entry_site
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000139	"Region in mRNA where ribosome assembles." [SO:ke]	4132274	SOFA	SOFA	sequence	6	SO	transcript	ribosome_entry_site
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000139	"Region in mRNA where ribosome assembles." [SO:ke]	4132275	SOFA	SOFA	sequence	6	SO	transcript	ribosome_entry_site
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000139	"Region in mRNA where ribosome assembles." [SO:ke]	4132276	SOFA	SOFA	sequence	6	SO	biological_region	ribosome_entry_site
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000139	"Region in mRNA where ribosome assembles." [SO:ke]	5180658	SOFA	SOFA	sequence	7	SO	gene_member_region	ribosome_entry_site
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000139	"Region in mRNA where ribosome assembles." [SO:ke]	6550231	SOFA	SOFA	sequence	9	SO	region	ribosome_entry_site
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000139	"Region in mRNA where ribosome assembles." [SO:ke]	5996358	SOFA	SOFA	sequence	8	SO	biological_region	ribosome_entry_site
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000139	"Region in mRNA where ribosome assembles." [SO:ke]	6807567	SOFA	SOFA	sequence	10	SO	sequence_feature	ribosome_entry_site
SO:0000140	\N	SOFA	"A sequence segment located within the five prime end of an mRNA that causes premature termination of translation." [SO:as]	SO:0000140	"A sequence segment located within the five prime end of an mRNA that causes premature termination of translation." [SO:as]	45113	\N	SOFA	sequence	0	SO	attenuator	attenuator
SO:0000234	SO:0000140	SOFA	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000140	"A sequence segment located within the five prime end of an mRNA that causes premature termination of translation." [SO:as]	489693	SOFA	SOFA	sequence	1	SO	mRNA	attenuator
SO:0001680	SO:0000140	SOFA	"A regulatory region that is involved in the control of the process of translation." [SO:ke]	SO:0000140	"A sequence segment located within the five prime end of an mRNA that causes premature termination of translation." [SO:as]	489694	SOFA	\N	sequence	1	SO	translation_regulatory_region	attenuator
SO:0000233	SO:0000234	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000140	"A sequence segment located within the five prime end of an mRNA that causes premature termination of translation." [SO:as]	1072112	SOFA	SOFA	sequence	2	SO	mature_transcript	attenuator
SO:0005836	SO:0001680	SOFA	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000140	"A sequence segment located within the five prime end of an mRNA that causes premature termination of translation." [SO:as]	1072113	\N	SOFA	sequence	2	SO	regulatory_region	attenuator
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000140	"A sequence segment located within the five prime end of an mRNA that causes premature termination of translation." [SO:as]	1903131	SOFA	SOFA	sequence	3	SO	transcript	attenuator
SO:0000831	SO:0005836	SOFA	"A region of a gene." [SO:ke]	SO:0000140	"A sequence segment located within the five prime end of an mRNA that causes premature termination of translation." [SO:as]	1903132	SOFA	SOFA	sequence	3	SO	gene_member_region	attenuator
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000140	"A sequence segment located within the five prime end of an mRNA that causes premature termination of translation." [SO:as]	2927612	SOFA	SOFA	sequence	4	SO	gene_member_region	attenuator
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000140	"A sequence segment located within the five prime end of an mRNA that causes premature termination of translation." [SO:as]	4001031	SOFA	SOFA	sequence	5	SO	biological_region	attenuator
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000140	"A sequence segment located within the five prime end of an mRNA that causes premature termination of translation." [SO:as]	4385703	SOFA	SOFA	sequence	6	SO	region	attenuator
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000140	"A sequence segment located within the five prime end of an mRNA that causes premature termination of translation." [SO:as]	5407370	SOFA	SOFA	sequence	7	SO	sequence_feature	attenuator
SO:0000141	\N	SOFA	"The sequence of DNA located either at the end of the transcript that causes RNA polymerase to terminate transcription." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000141	"The sequence of DNA located either at the end of the transcript that causes RNA polymerase to terminate transcription." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	45114	\N	SOFA	sequence	0	SO	terminator	terminator
SO:0000673	SO:0000141	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000141	"The sequence of DNA located either at the end of the transcript that causes RNA polymerase to terminate transcription." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	489695	SOFA	SOFA	sequence	1	SO	transcript	terminator
SO:0001679	SO:0000141	SOFA	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000141	"The sequence of DNA located either at the end of the transcript that causes RNA polymerase to terminate transcription." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	489696	SOFA	SOFA	sequence	1	SO	transcription_regulatory_region	terminator
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000141	"The sequence of DNA located either at the end of the transcript that causes RNA polymerase to terminate transcription." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072114	SOFA	SOFA	sequence	2	SO	gene_member_region	terminator
SO:0005836	SO:0001679	SOFA	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000141	"The sequence of DNA located either at the end of the transcript that causes RNA polymerase to terminate transcription." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072115	SOFA	SOFA	sequence	2	SO	regulatory_region	terminator
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000141	"The sequence of DNA located either at the end of the transcript that causes RNA polymerase to terminate transcription." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2927615	SOFA	SOFA	sequence	4	SO	biological_region	terminator
SO:0000831	SO:0005836	SOFA	"A region of a gene." [SO:ke]	SO:0000141	"The sequence of DNA located either at the end of the transcript that causes RNA polymerase to terminate transcription." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903134	SOFA	SOFA	sequence	3	SO	gene_member_region	terminator
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000141	"The sequence of DNA located either at the end of the transcript that causes RNA polymerase to terminate transcription." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	3173858	SOFA	SOFA	sequence	5	SO	region	terminator
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000141	"The sequence of DNA located either at the end of the transcript that causes RNA polymerase to terminate transcription." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4385704	SOFA	SOFA	sequence	6	SO	sequence_feature	terminator
SO:0000142	\N	\N	"A folded DNA sequence." [SO:ke]	SO:0000142	"A folded DNA sequence." [SO:ke]	45115	\N	\N	sequence	0	SO	DNA_sequence_secondary_structure	DNA_sequence_secondary_structure
SO:0000002	SO:0000142	\N	"A folded sequence." [SO:ke]	SO:0000142	"A folded DNA sequence." [SO:ke]	489697	\N	\N	sequence	1	SO	sequence_secondary_structure	DNA_sequence_secondary_structure
SO:0001411	SO:0000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000142	"A folded DNA sequence." [SO:ke]	1072116	\N	SOFA	sequence	2	SO	biological_region	DNA_sequence_secondary_structure
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000142	"A folded DNA sequence." [SO:ke]	1903135	SOFA	SOFA	sequence	3	SO	region	DNA_sequence_secondary_structure
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000142	"A folded DNA sequence." [SO:ke]	2927616	SOFA	SOFA	sequence	4	SO	sequence_feature	DNA_sequence_secondary_structure
SO:0000143	\N	SOFA	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0000143	"A region of known length which may be used to manufacture a longer region." [SO:ke]	45116	\N	SOFA	sequence	0	SO	assembly_component	assembly_component
SO:0001410	SO:0000143	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000143	"A region of known length which may be used to manufacture a longer region." [SO:ke]	489698	SOFA	SOFA	sequence	1	SO	experimental_feature	assembly_component
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000143	"A region of known length which may be used to manufacture a longer region." [SO:ke]	1072117	SOFA	SOFA	sequence	2	SO	region	assembly_component
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000143	"A region of known length which may be used to manufacture a longer region." [SO:ke]	1903136	SOFA	SOFA	sequence	3	SO	sequence_feature	assembly_component
SO:0000145	\N	\N	"A codon that has been redefined at translation. The redefinition may be as a result of translational bypass, translational frameshifting or stop codon readthrough." [SO:xp]	SO:0000145	"A codon that has been redefined at translation. The redefinition may be as a result of translational bypass, translational frameshifting or stop codon readthrough." [SO:xp]	45117	\N	\N	sequence	0	SO	recoded_codon	recoded_codon
SO:0000360	SO:0000145	\N	"A set of (usually) three nucleotide bases in a DNA or RNA sequence, which together code for a unique amino acid or the termination of translation and are contained within the CDS." [SO:ke]	SO:0000145	"A codon that has been redefined at translation. The redefinition may be as a result of translational bypass, translational frameshifting or stop codon readthrough." [SO:xp]	489699	\N	SOFA	sequence	1	SO	codon	recoded_codon
SO:0000851	SO:0000360	\N	"A region of a CDS." [SO:cb]	SO:0000145	"A codon that has been redefined at translation. The redefinition may be as a result of translational bypass, translational frameshifting or stop codon readthrough." [SO:xp]	1072118	SOFA	SOFA	sequence	2	SO	CDS_region	recoded_codon
SO:0000316	SO:0000851	\N	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	SO:0000145	"A codon that has been redefined at translation. The redefinition may be as a result of translational bypass, translational frameshifting or stop codon readthrough." [SO:xp]	1903137	SOFA	SOFA	sequence	3	SO	CDS	recoded_codon
SO:0000836	SO:0000851	\N	"A region of an mRNA." [SO:cb]	SO:0000145	"A codon that has been redefined at translation. The redefinition may be as a result of translational bypass, translational frameshifting or stop codon readthrough." [SO:xp]	1903138	SOFA	SOFA	sequence	3	SO	mRNA_region	recoded_codon
SO:0000836	SO:0000316	\N	"A region of an mRNA." [SO:cb]	SO:0000145	"A codon that has been redefined at translation. The redefinition may be as a result of translational bypass, translational frameshifting or stop codon readthrough." [SO:xp]	2927617	SOFA	SOFA	sequence	4	SO	mRNA_region	recoded_codon
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000145	"A codon that has been redefined at translation. The redefinition may be as a result of translational bypass, translational frameshifting or stop codon readthrough." [SO:xp]	4001034	SOFA	SOFA	sequence	5	SO	mRNA	recoded_codon
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:0000145	"A codon that has been redefined at translation. The redefinition may be as a result of translational bypass, translational frameshifting or stop codon readthrough." [SO:xp]	4001035	SOFA	SOFA	sequence	5	SO	mature_transcript_region	recoded_codon
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000145	"A codon that has been redefined at translation. The redefinition may be as a result of translational bypass, translational frameshifting or stop codon readthrough." [SO:xp]	4385705	SOFA	SOFA	sequence	6	SO	mature_transcript	recoded_codon
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0000145	"A codon that has been redefined at translation. The redefinition may be as a result of translational bypass, translational frameshifting or stop codon readthrough." [SO:xp]	4385706	SOFA	SOFA	sequence	6	SO	transcript_region	recoded_codon
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000145	"A codon that has been redefined at translation. The redefinition may be as a result of translational bypass, translational frameshifting or stop codon readthrough." [SO:xp]	5407371	SOFA	SOFA	sequence	7	SO	transcript	recoded_codon
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000145	"A codon that has been redefined at translation. The redefinition may be as a result of translational bypass, translational frameshifting or stop codon readthrough." [SO:xp]	5407372	SOFA	SOFA	sequence	7	SO	transcript	recoded_codon
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000145	"A codon that has been redefined at translation. The redefinition may be as a result of translational bypass, translational frameshifting or stop codon readthrough." [SO:xp]	5407373	SOFA	SOFA	sequence	7	SO	biological_region	recoded_codon
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000145	"A codon that has been redefined at translation. The redefinition may be as a result of translational bypass, translational frameshifting or stop codon readthrough." [SO:xp]	6146604	SOFA	SOFA	sequence	8	SO	gene_member_region	recoded_codon
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000145	"A codon that has been redefined at translation. The redefinition may be as a result of translational bypass, translational frameshifting or stop codon readthrough." [SO:xp]	6925076	SOFA	SOFA	sequence	10	SO	region	recoded_codon
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000145	"A codon that has been redefined at translation. The redefinition may be as a result of translational bypass, translational frameshifting or stop codon readthrough." [SO:xp]	6631369	SOFA	SOFA	sequence	9	SO	biological_region	recoded_codon
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000145	"A codon that has been redefined at translation. The redefinition may be as a result of translational bypass, translational frameshifting or stop codon readthrough." [SO:xp]	7068341	SOFA	SOFA	sequence	11	SO	sequence_feature	recoded_codon
SO:0000146	\N	\N	"An attribute describing when a sequence, usually an mRNA is capped by the addition of a modified guanine nucleotide at the 5' end." [SO:ke]	SO:0000146	"An attribute describing when a sequence, usually an mRNA is capped by the addition of a modified guanine nucleotide at the 5' end." [SO:ke]	45118	\N	\N	sequence	0	SO	capped	capped
SO:0000237	SO:0000146	\N	"" []	SO:0000146	"An attribute describing when a sequence, usually an mRNA is capped by the addition of a modified guanine nucleotide at the 5' end." [SO:ke]	489700	\N	\N	sequence	1	SO	transcript_attribute	capped
SO:0000733	SO:0000237	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000146	"An attribute describing when a sequence, usually an mRNA is capped by the addition of a modified guanine nucleotide at the 5' end." [SO:ke]	1072119	\N	\N	sequence	2	SO	feature_attribute	capped
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000146	"An attribute describing when a sequence, usually an mRNA is capped by the addition of a modified guanine nucleotide at the 5' end." [SO:ke]	1903139	\N	\N	sequence	3	SO	sequence_attribute	capped
SO:0000147	\N	SOFA	"A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing." [SO:ke]	SO:0000147	"A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing." [SO:ke]	45119	\N	SOFA	sequence	0	SO	exon	exon
SO:0000833	SO:0000147	SOFA	"A region of a transcript." [SO:ke]	SO:0000147	"A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing." [SO:ke]	489701	SOFA	SOFA	sequence	1	SO	transcript_region	exon
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000147	"A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing." [SO:ke]	1072120	SOFA	SOFA	sequence	2	SO	transcript	exon
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000147	"A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing." [SO:ke]	1072121	SOFA	SOFA	sequence	2	SO	biological_region	exon
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000147	"A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing." [SO:ke]	1903140	SOFA	SOFA	sequence	3	SO	gene_member_region	exon
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000147	"A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing." [SO:ke]	4001038	SOFA	SOFA	sequence	5	SO	region	exon
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000147	"A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing." [SO:ke]	2927620	SOFA	SOFA	sequence	4	SO	biological_region	exon
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000147	"A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing." [SO:ke]	4132277	SOFA	SOFA	sequence	6	SO	sequence_feature	exon
SO:0000148	\N	SOFA	"One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's." [SO:ls]	SO:0000148	"One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's." [SO:ls]	45120	\N	SOFA	sequence	0	SO	supercontig	supercontig
SO:0000719	SO:0000148	SOFA	"An ordered and oriented set of scaffolds based on somewhat weaker sets of inferential evidence such as one set of mate pair reads together with supporting evidence from ESTs or location of markers from SNP or microsatellite maps, or cytogenetic localization of contained markers." [FB:WG]	SO:0000148	"One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's." [SO:ls]	489702	SOFA	SOFA	sequence	1	SO	ultracontig	supercontig
SO:0001876	SO:0000148	SOFA	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0000148	"One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's." [SO:ls]	489703	SOFA	\N	sequence	1	SO	partial_genomic_sequence_assembly	supercontig
SO:0001876	SO:0000719	SOFA	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0000148	"One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's." [SO:ls]	1072122	SOFA	\N	sequence	2	SO	partial_genomic_sequence_assembly	supercontig
SO:0000353	SO:0001876	SOFA	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0000148	"One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's." [SO:ls]	1903142	\N	SOFA	sequence	3	SO	sequence_assembly	supercontig
SO:0001248	SO:0000353	SOFA	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0000148	"One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's." [SO:ls]	2018215	SOFA	SOFA	sequence	4	SO	assembly	supercontig
SO:0001410	SO:0001248	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000148	"One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's." [SO:ls]	3173859	SOFA	SOFA	sequence	5	SO	experimental_feature	supercontig
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000148	"One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's." [SO:ls]	4385707	SOFA	SOFA	sequence	6	SO	region	supercontig
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000148	"One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's." [SO:ls]	5407374	SOFA	SOFA	sequence	7	SO	sequence_feature	supercontig
SO:0000149	\N	SOFA	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	SO:0000149	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	45121	\N	SOFA	sequence	0	SO	contig	contig
SO:0000143	SO:0000149	SOFA	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0000149	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	489704	SOFA	SOFA	sequence	1	SO	assembly_component	contig
SO:0000148	SO:0000149	SOFA	"One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's." [SO:ls]	SO:0000149	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	489705	SOFA	SOFA	sequence	1	SO	supercontig	contig
SO:0000353	SO:0000149	SOFA	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0000149	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	489706	SOFA	SOFA	sequence	1	SO	sequence_assembly	contig
SO:0001410	SO:0000143	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000149	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	1072124	SOFA	SOFA	sequence	2	SO	experimental_feature	contig
SO:0000719	SO:0000148	SOFA	"An ordered and oriented set of scaffolds based on somewhat weaker sets of inferential evidence such as one set of mate pair reads together with supporting evidence from ESTs or location of markers from SNP or microsatellite maps, or cytogenetic localization of contained markers." [FB:WG]	SO:0000149	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	1072125	SOFA	SOFA	sequence	2	SO	ultracontig	contig
SO:0001876	SO:0000148	SOFA	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0000149	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	1072126	SOFA	\N	sequence	2	SO	partial_genomic_sequence_assembly	contig
SO:0001248	SO:0000353	SOFA	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0000149	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	3173861	SOFA	SOFA	sequence	5	SO	assembly	contig
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000149	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	5059244	SOFA	SOFA	sequence	7	SO	region	contig
SO:0001876	SO:0000719	SOFA	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0000149	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	1903145	SOFA	\N	sequence	3	SO	partial_genomic_sequence_assembly	contig
SO:0000353	SO:0001876	SOFA	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0000149	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	2927624	\N	SOFA	sequence	4	SO	sequence_assembly	contig
SO:0001410	SO:0001248	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000149	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	4066646	SOFA	SOFA	sequence	6	SO	experimental_feature	contig
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000149	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	5817327	SOFA	SOFA	sequence	8	SO	sequence_feature	contig
SO:0000150	\N	SOFA	"A sequence obtained from a single sequencing experiment. Typically a read is produced when a base calling program interprets information from a chromatogram trace file produced from a sequencing machine." [SO:rd]	SO:0000150	"A sequence obtained from a single sequencing experiment. Typically a read is produced when a base calling program interprets information from a chromatogram trace file produced from a sequencing machine." [SO:rd]	45122	\N	SOFA	sequence	0	SO	read	read
SO:0000143	SO:0000150	SOFA	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0000150	"A sequence obtained from a single sequencing experiment. Typically a read is produced when a base calling program interprets information from a chromatogram trace file produced from a sequencing machine." [SO:rd]	489707	SOFA	SOFA	sequence	1	SO	assembly_component	read
SO:0000149	SO:0000150	SOFA	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	SO:0000150	"A sequence obtained from a single sequencing experiment. Typically a read is produced when a base calling program interprets information from a chromatogram trace file produced from a sequencing machine." [SO:rd]	489708	SOFA	SOFA	sequence	1	SO	contig	read
SO:0001410	SO:0000143	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000150	"A sequence obtained from a single sequencing experiment. Typically a read is produced when a base calling program interprets information from a chromatogram trace file produced from a sequencing machine." [SO:rd]	1903149	SOFA	SOFA	sequence	3	SO	experimental_feature	read
SO:0000143	SO:0000149	SOFA	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0000150	"A sequence obtained from a single sequencing experiment. Typically a read is produced when a base calling program interprets information from a chromatogram trace file produced from a sequencing machine." [SO:rd]	1072129	SOFA	SOFA	sequence	2	SO	assembly_component	read
SO:0000148	SO:0000149	SOFA	"One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's." [SO:ls]	SO:0000150	"A sequence obtained from a single sequencing experiment. Typically a read is produced when a base calling program interprets information from a chromatogram trace file produced from a sequencing machine." [SO:rd]	1072130	SOFA	SOFA	sequence	2	SO	supercontig	read
SO:0000353	SO:0000149	SOFA	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0000150	"A sequence obtained from a single sequencing experiment. Typically a read is produced when a base calling program interprets information from a chromatogram trace file produced from a sequencing machine." [SO:rd]	1072131	SOFA	SOFA	sequence	2	SO	sequence_assembly	read
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000150	"A sequence obtained from a single sequencing experiment. Typically a read is produced when a base calling program interprets information from a chromatogram trace file produced from a sequencing machine." [SO:rd]	5876433	SOFA	SOFA	sequence	8	SO	region	read
SO:0000719	SO:0000148	SOFA	"An ordered and oriented set of scaffolds based on somewhat weaker sets of inferential evidence such as one set of mate pair reads together with supporting evidence from ESTs or location of markers from SNP or microsatellite maps, or cytogenetic localization of contained markers." [FB:WG]	SO:0000150	"A sequence obtained from a single sequencing experiment. Typically a read is produced when a base calling program interprets information from a chromatogram trace file produced from a sequencing machine." [SO:rd]	1903150	SOFA	SOFA	sequence	3	SO	ultracontig	read
SO:0001876	SO:0000148	SOFA	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0000150	"A sequence obtained from a single sequencing experiment. Typically a read is produced when a base calling program interprets information from a chromatogram trace file produced from a sequencing machine." [SO:rd]	1903151	SOFA	\N	sequence	3	SO	partial_genomic_sequence_assembly	read
SO:0001248	SO:0000353	SOFA	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0000150	"A sequence obtained from a single sequencing experiment. Typically a read is produced when a base calling program interprets information from a chromatogram trace file produced from a sequencing machine." [SO:rd]	4385708	SOFA	SOFA	sequence	6	SO	assembly	read
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000150	"A sequence obtained from a single sequencing experiment. Typically a read is produced when a base calling program interprets information from a chromatogram trace file produced from a sequencing machine." [SO:rd]	6378764	SOFA	SOFA	sequence	9	SO	sequence_feature	read
SO:0001876	SO:0000719	SOFA	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0000150	"A sequence obtained from a single sequencing experiment. Typically a read is produced when a base calling program interprets information from a chromatogram trace file produced from a sequencing machine." [SO:rd]	2927628	SOFA	\N	sequence	4	SO	partial_genomic_sequence_assembly	read
SO:0000353	SO:0001876	SOFA	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0000150	"A sequence obtained from a single sequencing experiment. Typically a read is produced when a base calling program interprets information from a chromatogram trace file produced from a sequencing machine." [SO:rd]	4001040	\N	SOFA	sequence	5	SO	sequence_assembly	read
SO:0001410	SO:0001248	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000150	"A sequence obtained from a single sequencing experiment. Typically a read is produced when a base calling program interprets information from a chromatogram trace file produced from a sequencing machine." [SO:rd]	5059245	SOFA	SOFA	sequence	7	SO	experimental_feature	read
SO:0000151	\N	SOFA	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0000151	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	45123	\N	SOFA	sequence	0	SO	clone	clone
SO:0000695	SO:0000151	SOFA	"A sequence used in experiment." [SO:ke]	SO:0000151	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	489709	SOFA	SOFA	sequence	1	SO	reagent	clone
SO:0001409	SO:0000695	SOFA	"A region which is intended for use in an experiment." [SO:cb]	SO:0000151	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	1072132	SOFA	SOFA	sequence	2	SO	biomaterial_region	clone
SO:0000001	SO:0001409	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000151	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	1903153	SOFA	SOFA	sequence	3	SO	region	clone
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000151	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	2927631	SOFA	SOFA	sequence	4	SO	sequence_feature	clone
SO:0000152	\N	\N	"Yeast Artificial Chromosome, a vector constructed from the telomeric, centromeric, and replication origin sequences needed for replication in yeast cells." [SO:ma]	SO:0000152	"Yeast Artificial Chromosome, a vector constructed from the telomeric, centromeric, and replication origin sequences needed for replication in yeast cells." [SO:ma]	45124	\N	\N	sequence	0	SO	YAC	YAC
SO:0000440	SO:0000152	\N	"A replicon that has been modified to act as a vector for foreign sequence." [SO:ma]	SO:0000152	"Yeast Artificial Chromosome, a vector constructed from the telomeric, centromeric, and replication origin sequences needed for replication in yeast cells." [SO:ma]	489710	\N	\N	sequence	1	SO	vector_replicon	YAC
SO:0000151	SO:0000440	\N	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0000152	"Yeast Artificial Chromosome, a vector constructed from the telomeric, centromeric, and replication origin sequences needed for replication in yeast cells." [SO:ma]	1072133	\N	SOFA	sequence	2	SO	clone	YAC
SO:0001235	SO:0000440	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000152	"Yeast Artificial Chromosome, a vector constructed from the telomeric, centromeric, and replication origin sequences needed for replication in yeast cells." [SO:ma]	1072134	\N	SOFA	sequence	2	SO	replicon	YAC
SO:0000695	SO:0000151	\N	"A sequence used in experiment." [SO:ke]	SO:0000152	"Yeast Artificial Chromosome, a vector constructed from the telomeric, centromeric, and replication origin sequences needed for replication in yeast cells." [SO:ma]	1903154	SOFA	SOFA	sequence	3	SO	reagent	YAC
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000152	"Yeast Artificial Chromosome, a vector constructed from the telomeric, centromeric, and replication origin sequences needed for replication in yeast cells." [SO:ma]	1903155	SOFA	SOFA	sequence	3	SO	biological_region	YAC
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000152	"Yeast Artificial Chromosome, a vector constructed from the telomeric, centromeric, and replication origin sequences needed for replication in yeast cells." [SO:ma]	2927632	SOFA	SOFA	sequence	4	SO	biomaterial_region	YAC
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000152	"Yeast Artificial Chromosome, a vector constructed from the telomeric, centromeric, and replication origin sequences needed for replication in yeast cells." [SO:ma]	2927633	SOFA	SOFA	sequence	4	SO	region	YAC
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000152	"Yeast Artificial Chromosome, a vector constructed from the telomeric, centromeric, and replication origin sequences needed for replication in yeast cells." [SO:ma]	4001043	SOFA	SOFA	sequence	5	SO	region	YAC
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000152	"Yeast Artificial Chromosome, a vector constructed from the telomeric, centromeric, and replication origin sequences needed for replication in yeast cells." [SO:ma]	4965692	SOFA	SOFA	sequence	6	SO	sequence_feature	YAC
SO:0000153	\N	\N	"Bacterial Artificial Chromosome, a cloning vector that can be propagated as mini-chromosomes in a bacterial host." [SO:ma]	SO:0000153	"Bacterial Artificial Chromosome, a cloning vector that can be propagated as mini-chromosomes in a bacterial host." [SO:ma]	45125	\N	\N	sequence	0	SO	BAC	BAC
SO:0000440	SO:0000153	\N	"A replicon that has been modified to act as a vector for foreign sequence." [SO:ma]	SO:0000153	"Bacterial Artificial Chromosome, a cloning vector that can be propagated as mini-chromosomes in a bacterial host." [SO:ma]	489711	\N	\N	sequence	1	SO	vector_replicon	BAC
SO:0000151	SO:0000440	\N	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0000153	"Bacterial Artificial Chromosome, a cloning vector that can be propagated as mini-chromosomes in a bacterial host." [SO:ma]	1072135	\N	SOFA	sequence	2	SO	clone	BAC
SO:0001235	SO:0000440	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000153	"Bacterial Artificial Chromosome, a cloning vector that can be propagated as mini-chromosomes in a bacterial host." [SO:ma]	1072136	\N	SOFA	sequence	2	SO	replicon	BAC
SO:0000695	SO:0000151	\N	"A sequence used in experiment." [SO:ke]	SO:0000153	"Bacterial Artificial Chromosome, a cloning vector that can be propagated as mini-chromosomes in a bacterial host." [SO:ma]	1903156	SOFA	SOFA	sequence	3	SO	reagent	BAC
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000153	"Bacterial Artificial Chromosome, a cloning vector that can be propagated as mini-chromosomes in a bacterial host." [SO:ma]	1903157	SOFA	SOFA	sequence	3	SO	biological_region	BAC
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000153	"Bacterial Artificial Chromosome, a cloning vector that can be propagated as mini-chromosomes in a bacterial host." [SO:ma]	2927634	SOFA	SOFA	sequence	4	SO	biomaterial_region	BAC
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000153	"Bacterial Artificial Chromosome, a cloning vector that can be propagated as mini-chromosomes in a bacterial host." [SO:ma]	2927635	SOFA	SOFA	sequence	4	SO	region	BAC
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000153	"Bacterial Artificial Chromosome, a cloning vector that can be propagated as mini-chromosomes in a bacterial host." [SO:ma]	4001045	SOFA	SOFA	sequence	5	SO	region	BAC
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000153	"Bacterial Artificial Chromosome, a cloning vector that can be propagated as mini-chromosomes in a bacterial host." [SO:ma]	4965693	SOFA	SOFA	sequence	6	SO	sequence_feature	BAC
SO:0000154	\N	\N	"The P1-derived artificial chromosome are DNA constructs that are derived from the DNA of P1 bacteriophage. They can carry large amounts (about 100-300 kilobases) of other sequences for a variety of bioengineering purposes. It is one type of vector used to clone DNA fragments (100- to 300-kb insert size; average, 150 kb) in Escherichia coli cells." [http://en.wikipedia.org/wiki/P1-derived_artificial_chromosome]	SO:0000154	"The P1-derived artificial chromosome are DNA constructs that are derived from the DNA of P1 bacteriophage. They can carry large amounts (about 100-300 kilobases) of other sequences for a variety of bioengineering purposes. It is one type of vector used to clone DNA fragments (100- to 300-kb insert size; average, 150 kb) in Escherichia coli cells." [http://en.wikipedia.org/wiki/P1-derived_artificial_chromosome]	45126	\N	\N	sequence	0	SO	PAC	PAC
SO:0000440	SO:0000154	\N	"A replicon that has been modified to act as a vector for foreign sequence." [SO:ma]	SO:0000154	"The P1-derived artificial chromosome are DNA constructs that are derived from the DNA of P1 bacteriophage. They can carry large amounts (about 100-300 kilobases) of other sequences for a variety of bioengineering purposes. It is one type of vector used to clone DNA fragments (100- to 300-kb insert size; average, 150 kb) in Escherichia coli cells." [http://en.wikipedia.org/wiki/P1-derived_artificial_chromosome]	489712	\N	\N	sequence	1	SO	vector_replicon	PAC
SO:0000151	SO:0000440	\N	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0000154	"The P1-derived artificial chromosome are DNA constructs that are derived from the DNA of P1 bacteriophage. They can carry large amounts (about 100-300 kilobases) of other sequences for a variety of bioengineering purposes. It is one type of vector used to clone DNA fragments (100- to 300-kb insert size; average, 150 kb) in Escherichia coli cells." [http://en.wikipedia.org/wiki/P1-derived_artificial_chromosome]	1072137	\N	SOFA	sequence	2	SO	clone	PAC
SO:0001235	SO:0000440	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000154	"The P1-derived artificial chromosome are DNA constructs that are derived from the DNA of P1 bacteriophage. They can carry large amounts (about 100-300 kilobases) of other sequences for a variety of bioengineering purposes. It is one type of vector used to clone DNA fragments (100- to 300-kb insert size; average, 150 kb) in Escherichia coli cells." [http://en.wikipedia.org/wiki/P1-derived_artificial_chromosome]	1072138	\N	SOFA	sequence	2	SO	replicon	PAC
SO:0000695	SO:0000151	\N	"A sequence used in experiment." [SO:ke]	SO:0000154	"The P1-derived artificial chromosome are DNA constructs that are derived from the DNA of P1 bacteriophage. They can carry large amounts (about 100-300 kilobases) of other sequences for a variety of bioengineering purposes. It is one type of vector used to clone DNA fragments (100- to 300-kb insert size; average, 150 kb) in Escherichia coli cells." [http://en.wikipedia.org/wiki/P1-derived_artificial_chromosome]	1903158	SOFA	SOFA	sequence	3	SO	reagent	PAC
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000154	"The P1-derived artificial chromosome are DNA constructs that are derived from the DNA of P1 bacteriophage. They can carry large amounts (about 100-300 kilobases) of other sequences for a variety of bioengineering purposes. It is one type of vector used to clone DNA fragments (100- to 300-kb insert size; average, 150 kb) in Escherichia coli cells." [http://en.wikipedia.org/wiki/P1-derived_artificial_chromosome]	1903159	SOFA	SOFA	sequence	3	SO	biological_region	PAC
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000154	"The P1-derived artificial chromosome are DNA constructs that are derived from the DNA of P1 bacteriophage. They can carry large amounts (about 100-300 kilobases) of other sequences for a variety of bioengineering purposes. It is one type of vector used to clone DNA fragments (100- to 300-kb insert size; average, 150 kb) in Escherichia coli cells." [http://en.wikipedia.org/wiki/P1-derived_artificial_chromosome]	2927636	SOFA	SOFA	sequence	4	SO	biomaterial_region	PAC
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000154	"The P1-derived artificial chromosome are DNA constructs that are derived from the DNA of P1 bacteriophage. They can carry large amounts (about 100-300 kilobases) of other sequences for a variety of bioengineering purposes. It is one type of vector used to clone DNA fragments (100- to 300-kb insert size; average, 150 kb) in Escherichia coli cells." [http://en.wikipedia.org/wiki/P1-derived_artificial_chromosome]	2927637	SOFA	SOFA	sequence	4	SO	region	PAC
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000154	"The P1-derived artificial chromosome are DNA constructs that are derived from the DNA of P1 bacteriophage. They can carry large amounts (about 100-300 kilobases) of other sequences for a variety of bioengineering purposes. It is one type of vector used to clone DNA fragments (100- to 300-kb insert size; average, 150 kb) in Escherichia coli cells." [http://en.wikipedia.org/wiki/P1-derived_artificial_chromosome]	4001047	SOFA	SOFA	sequence	5	SO	region	PAC
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000154	"The P1-derived artificial chromosome are DNA constructs that are derived from the DNA of P1 bacteriophage. They can carry large amounts (about 100-300 kilobases) of other sequences for a variety of bioengineering purposes. It is one type of vector used to clone DNA fragments (100- to 300-kb insert size; average, 150 kb) in Escherichia coli cells." [http://en.wikipedia.org/wiki/P1-derived_artificial_chromosome]	4965694	SOFA	SOFA	sequence	6	SO	sequence_feature	PAC
SO:0000155	\N	\N	"A self replicating, using the hosts cellular machinery, often circular nucleic acid molecule that is distinct from a chromosome in the organism." [SO:ma]	SO:0000155	"A self replicating, using the hosts cellular machinery, often circular nucleic acid molecule that is distinct from a chromosome in the organism." [SO:ma]	45127	\N	\N	sequence	0	SO	plasmid	plasmid
SO:0001235	SO:0000155	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000155	"A self replicating, using the hosts cellular machinery, often circular nucleic acid molecule that is distinct from a chromosome in the organism." [SO:ma]	489713	\N	SOFA	sequence	1	SO	replicon	plasmid
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000155	"A self replicating, using the hosts cellular machinery, often circular nucleic acid molecule that is distinct from a chromosome in the organism." [SO:ma]	1072139	SOFA	SOFA	sequence	2	SO	biological_region	plasmid
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000155	"A self replicating, using the hosts cellular machinery, often circular nucleic acid molecule that is distinct from a chromosome in the organism." [SO:ma]	1903160	SOFA	SOFA	sequence	3	SO	region	plasmid
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000155	"A self replicating, using the hosts cellular machinery, often circular nucleic acid molecule that is distinct from a chromosome in the organism." [SO:ma]	2927638	SOFA	SOFA	sequence	4	SO	sequence_feature	plasmid
SO:0000156	\N	\N	"A cloning vector that is a hybrid of lambda phages and a plasmid that can be propagated as a plasmid or packaged as a phage,since they retain the lambda cos sites." [SO:ma]	SO:0000156	"A cloning vector that is a hybrid of lambda phages and a plasmid that can be propagated as a plasmid or packaged as a phage,since they retain the lambda cos sites." [SO:ma]	45128	\N	\N	sequence	0	SO	cosmid	cosmid
SO:0000440	SO:0000156	\N	"A replicon that has been modified to act as a vector for foreign sequence." [SO:ma]	SO:0000156	"A cloning vector that is a hybrid of lambda phages and a plasmid that can be propagated as a plasmid or packaged as a phage,since they retain the lambda cos sites." [SO:ma]	489714	\N	\N	sequence	1	SO	vector_replicon	cosmid
SO:0000151	SO:0000440	\N	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0000156	"A cloning vector that is a hybrid of lambda phages and a plasmid that can be propagated as a plasmid or packaged as a phage,since they retain the lambda cos sites." [SO:ma]	1072140	\N	SOFA	sequence	2	SO	clone	cosmid
SO:0001235	SO:0000440	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000156	"A cloning vector that is a hybrid of lambda phages and a plasmid that can be propagated as a plasmid or packaged as a phage,since they retain the lambda cos sites." [SO:ma]	1072141	\N	SOFA	sequence	2	SO	replicon	cosmid
SO:0000695	SO:0000151	\N	"A sequence used in experiment." [SO:ke]	SO:0000156	"A cloning vector that is a hybrid of lambda phages and a plasmid that can be propagated as a plasmid or packaged as a phage,since they retain the lambda cos sites." [SO:ma]	1903161	SOFA	SOFA	sequence	3	SO	reagent	cosmid
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000156	"A cloning vector that is a hybrid of lambda phages and a plasmid that can be propagated as a plasmid or packaged as a phage,since they retain the lambda cos sites." [SO:ma]	1903162	SOFA	SOFA	sequence	3	SO	biological_region	cosmid
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000156	"A cloning vector that is a hybrid of lambda phages and a plasmid that can be propagated as a plasmid or packaged as a phage,since they retain the lambda cos sites." [SO:ma]	2927639	SOFA	SOFA	sequence	4	SO	biomaterial_region	cosmid
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000156	"A cloning vector that is a hybrid of lambda phages and a plasmid that can be propagated as a plasmid or packaged as a phage,since they retain the lambda cos sites." [SO:ma]	2927640	SOFA	SOFA	sequence	4	SO	region	cosmid
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000156	"A cloning vector that is a hybrid of lambda phages and a plasmid that can be propagated as a plasmid or packaged as a phage,since they retain the lambda cos sites." [SO:ma]	4001049	SOFA	SOFA	sequence	5	SO	region	cosmid
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000156	"A cloning vector that is a hybrid of lambda phages and a plasmid that can be propagated as a plasmid or packaged as a phage,since they retain the lambda cos sites." [SO:ma]	4965695	SOFA	SOFA	sequence	6	SO	sequence_feature	cosmid
SO:0000157	\N	\N	"A plasmid which carries within its sequence a bacteriophage replication origin. When the host bacterium is infected with \\"helper\\" phage, a phagemid is replicated along with the phage DNA and packaged into phage capsids." [SO:ma]	SO:0000157	"A plasmid which carries within its sequence a bacteriophage replication origin. When the host bacterium is infected with \\"helper\\" phage, a phagemid is replicated along with the phage DNA and packaged into phage capsids." [SO:ma]	45129	\N	\N	sequence	0	SO	phagemid	phagemid
SO:0000440	SO:0000157	\N	"A replicon that has been modified to act as a vector for foreign sequence." [SO:ma]	SO:0000157	"A plasmid which carries within its sequence a bacteriophage replication origin. When the host bacterium is infected with \\"helper\\" phage, a phagemid is replicated along with the phage DNA and packaged into phage capsids." [SO:ma]	489715	\N	\N	sequence	1	SO	vector_replicon	phagemid
SO:0000151	SO:0000440	\N	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0000157	"A plasmid which carries within its sequence a bacteriophage replication origin. When the host bacterium is infected with \\"helper\\" phage, a phagemid is replicated along with the phage DNA and packaged into phage capsids." [SO:ma]	1072142	\N	SOFA	sequence	2	SO	clone	phagemid
SO:0001235	SO:0000440	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000157	"A plasmid which carries within its sequence a bacteriophage replication origin. When the host bacterium is infected with \\"helper\\" phage, a phagemid is replicated along with the phage DNA and packaged into phage capsids." [SO:ma]	1072143	\N	SOFA	sequence	2	SO	replicon	phagemid
SO:0000695	SO:0000151	\N	"A sequence used in experiment." [SO:ke]	SO:0000157	"A plasmid which carries within its sequence a bacteriophage replication origin. When the host bacterium is infected with \\"helper\\" phage, a phagemid is replicated along with the phage DNA and packaged into phage capsids." [SO:ma]	1903163	SOFA	SOFA	sequence	3	SO	reagent	phagemid
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000157	"A plasmid which carries within its sequence a bacteriophage replication origin. When the host bacterium is infected with \\"helper\\" phage, a phagemid is replicated along with the phage DNA and packaged into phage capsids." [SO:ma]	1903164	SOFA	SOFA	sequence	3	SO	biological_region	phagemid
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000157	"A plasmid which carries within its sequence a bacteriophage replication origin. When the host bacterium is infected with \\"helper\\" phage, a phagemid is replicated along with the phage DNA and packaged into phage capsids." [SO:ma]	2927641	SOFA	SOFA	sequence	4	SO	biomaterial_region	phagemid
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000157	"A plasmid which carries within its sequence a bacteriophage replication origin. When the host bacterium is infected with \\"helper\\" phage, a phagemid is replicated along with the phage DNA and packaged into phage capsids." [SO:ma]	2927642	SOFA	SOFA	sequence	4	SO	region	phagemid
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000157	"A plasmid which carries within its sequence a bacteriophage replication origin. When the host bacterium is infected with \\"helper\\" phage, a phagemid is replicated along with the phage DNA and packaged into phage capsids." [SO:ma]	4001051	SOFA	SOFA	sequence	5	SO	region	phagemid
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000157	"A plasmid which carries within its sequence a bacteriophage replication origin. When the host bacterium is infected with \\"helper\\" phage, a phagemid is replicated along with the phage DNA and packaged into phage capsids." [SO:ma]	4965696	SOFA	SOFA	sequence	6	SO	sequence_feature	phagemid
SO:0000158	\N	\N	"A cloning vector that utilizes the E. coli F factor." [SO:ma]	SO:0000158	"A cloning vector that utilizes the E. coli F factor." [SO:ma]	45130	\N	\N	sequence	0	SO	fosmid	fosmid
SO:0000440	SO:0000158	\N	"A replicon that has been modified to act as a vector for foreign sequence." [SO:ma]	SO:0000158	"A cloning vector that utilizes the E. coli F factor." [SO:ma]	489716	\N	\N	sequence	1	SO	vector_replicon	fosmid
SO:0000151	SO:0000440	\N	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0000158	"A cloning vector that utilizes the E. coli F factor." [SO:ma]	1072144	\N	SOFA	sequence	2	SO	clone	fosmid
SO:0001235	SO:0000440	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000158	"A cloning vector that utilizes the E. coli F factor." [SO:ma]	1072145	\N	SOFA	sequence	2	SO	replicon	fosmid
SO:0000695	SO:0000151	\N	"A sequence used in experiment." [SO:ke]	SO:0000158	"A cloning vector that utilizes the E. coli F factor." [SO:ma]	1903165	SOFA	SOFA	sequence	3	SO	reagent	fosmid
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000158	"A cloning vector that utilizes the E. coli F factor." [SO:ma]	1903166	SOFA	SOFA	sequence	3	SO	biological_region	fosmid
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000158	"A cloning vector that utilizes the E. coli F factor." [SO:ma]	2927643	SOFA	SOFA	sequence	4	SO	biomaterial_region	fosmid
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000158	"A cloning vector that utilizes the E. coli F factor." [SO:ma]	2927644	SOFA	SOFA	sequence	4	SO	region	fosmid
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000158	"A cloning vector that utilizes the E. coli F factor." [SO:ma]	4001053	SOFA	SOFA	sequence	5	SO	region	fosmid
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000158	"A cloning vector that utilizes the E. coli F factor." [SO:ma]	4965697	SOFA	SOFA	sequence	6	SO	sequence_feature	fosmid
SO:0000159	\N	SOFA	"The point at which one or more contiguous nucleotides were excised." [SO:ke]	SO:0000159	"The point at which one or more contiguous nucleotides were excised." [SO:ke]	45131	\N	SOFA	sequence	0	SO	deletion	deletion
SO:0001059	SO:0000159	SOFA	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0000159	"The point at which one or more contiguous nucleotides were excised." [SO:ke]	489717	SOFA	SOFA	sequence	1	SO	sequence_alteration	deletion
SO:0001411	SO:0000159	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000159	"The point at which one or more contiguous nucleotides were excised." [SO:ke]	489718	SOFA	SOFA	sequence	1	SO	biological_region	deletion
SO:0002072	SO:0001059	SOFA	"" []	SO:0000159	"The point at which one or more contiguous nucleotides were excised." [SO:ke]	1072146	SOFA	\N	sequence	2	SO	sequence_comparison	deletion
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000159	"The point at which one or more contiguous nucleotides were excised." [SO:ke]	1072147	SOFA	SOFA	sequence	2	SO	region	deletion
SO:0000110	SO:0002072	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000159	"The point at which one or more contiguous nucleotides were excised." [SO:ke]	1903167	\N	SOFA	sequence	3	SO	sequence_feature	deletion
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000159	"The point at which one or more contiguous nucleotides were excised." [SO:ke]	1903168	SOFA	SOFA	sequence	3	SO	sequence_feature	deletion
SO:0000161	\N	SOFA	"A modified  base in which adenine has been methylated." [SO:ke]	SO:0000161	"A modified  base in which adenine has been methylated." [SO:ke]	45132	\N	SOFA	sequence	0	SO	methylated_adenine	methylated_adenine
SO:0000306	SO:0000161	SOFA	"A nucleotide modified by methylation." [SO:ke]	SO:0000161	"A modified  base in which adenine has been methylated." [SO:ke]	489719	SOFA	SOFA	sequence	1	SO	methylated_DNA_base_feature	methylated_adenine
SO:0001962	SO:0000161	SOFA	"A modified adenine DNA base feature." [SO:ke]	SO:0000161	"A modified  base in which adenine has been methylated." [SO:ke]	489720	SOFA	\N	sequence	1	SO	modified_adenine	methylated_adenine
SO:0000305	SO:0000306	SOFA	"A modified nucleotide, i.e. a nucleotide other than A, T, C. G." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000161	"A modified  base in which adenine has been methylated." [SO:ke]	1072148	SOFA	SOFA	sequence	2	SO	modified_DNA_base	methylated_adenine
SO:0000305	SO:0001962	SOFA	"A modified nucleotide, i.e. a nucleotide other than A, T, C. G." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000161	"A modified  base in which adenine has been methylated." [SO:ke]	1072149	\N	SOFA	sequence	2	SO	modified_DNA_base	methylated_adenine
SO:0001236	SO:0000305	SOFA	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0000161	"A modified  base in which adenine has been methylated." [SO:ke]	1903169	SOFA	SOFA	sequence	3	SO	base	methylated_adenine
SO:0001720	SO:0000305	SOFA	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0000161	"A modified  base in which adenine has been methylated." [SO:ke]	1903170	SOFA	SOFA	sequence	3	SO	epigenetically_modified_region	methylated_adenine
SO:0001411	SO:0001236	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000161	"A modified  base in which adenine has been methylated." [SO:ke]	2927645	SOFA	SOFA	sequence	4	SO	biological_region	methylated_adenine
SO:0001411	SO:0001720	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000161	"A modified  base in which adenine has been methylated." [SO:ke]	2927646	SOFA	SOFA	sequence	4	SO	biological_region	methylated_adenine
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000161	"A modified  base in which adenine has been methylated." [SO:ke]	4001055	SOFA	SOFA	sequence	5	SO	region	methylated_adenine
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000161	"A modified  base in which adenine has been methylated." [SO:ke]	4965698	SOFA	SOFA	sequence	6	SO	sequence_feature	methylated_adenine
SO:0000162	\N	SOFA	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	SO:0000162	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	45133	\N	SOFA	sequence	0	SO	splice_site	splice_site
SO:0000835	SO:0000162	SOFA	"A part of a primary transcript." [SO:ke]	SO:0000162	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	489721	SOFA	SOFA	sequence	1	SO	primary_transcript_region	splice_site
SO:0000185	SO:0000835	SOFA	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000162	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	1072150	SOFA	SOFA	sequence	2	SO	primary_transcript	splice_site
SO:0000833	SO:0000835	SOFA	"A region of a transcript." [SO:ke]	SO:0000162	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	1072151	SOFA	SOFA	sequence	2	SO	transcript_region	splice_site
SO:0000673	SO:0000185	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000162	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	1903171	SOFA	SOFA	sequence	3	SO	transcript	splice_site
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000162	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	1903172	SOFA	SOFA	sequence	3	SO	transcript	splice_site
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000162	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	1903173	SOFA	SOFA	sequence	3	SO	biological_region	splice_site
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000162	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	2927647	SOFA	SOFA	sequence	4	SO	gene_member_region	splice_site
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000162	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	4965699	SOFA	SOFA	sequence	6	SO	region	splice_site
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000162	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	4001056	SOFA	SOFA	sequence	5	SO	biological_region	splice_site
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000162	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	5180661	SOFA	SOFA	sequence	7	SO	sequence_feature	splice_site
SO:0000163	\N	SOFA	"Intronic 2 bp region bordering the exon, at the 5' edge of the intron. A splice_site that is downstream_adjacent_to exon and starts intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	SO:0000163	"Intronic 2 bp region bordering the exon, at the 5' edge of the intron. A splice_site that is downstream_adjacent_to exon and starts intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	45134	\N	SOFA	sequence	0	SO	five_prime_cis_splice_site	five_prime_cis_splice_site
SO:0001419	SO:0000163	SOFA	"Intronic 2 bp region bordering exon. A splice_site that adjacent_to exon and overlaps intron." [SO:cjm, SO:ke]	SO:0000163	"Intronic 2 bp region bordering the exon, at the 5' edge of the intron. A splice_site that is downstream_adjacent_to exon and starts intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	489722	SOFA	SOFA	sequence	1	SO	cis_splice_site	five_prime_cis_splice_site
SO:0000162	SO:0001419	SOFA	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	SO:0000163	"Intronic 2 bp region bordering the exon, at the 5' edge of the intron. A splice_site that is downstream_adjacent_to exon and starts intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	1072152	SOFA	SOFA	sequence	2	SO	splice_site	five_prime_cis_splice_site
SO:0000835	SO:0000162	SOFA	"A part of a primary transcript." [SO:ke]	SO:0000163	"Intronic 2 bp region bordering the exon, at the 5' edge of the intron. A splice_site that is downstream_adjacent_to exon and starts intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	1903174	SOFA	SOFA	sequence	3	SO	primary_transcript_region	five_prime_cis_splice_site
SO:0000185	SO:0000835	SOFA	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000163	"Intronic 2 bp region bordering the exon, at the 5' edge of the intron. A splice_site that is downstream_adjacent_to exon and starts intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	2927649	SOFA	SOFA	sequence	4	SO	primary_transcript	five_prime_cis_splice_site
SO:0000833	SO:0000835	SOFA	"A region of a transcript." [SO:ke]	SO:0000163	"Intronic 2 bp region bordering the exon, at the 5' edge of the intron. A splice_site that is downstream_adjacent_to exon and starts intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	2927650	SOFA	SOFA	sequence	4	SO	transcript_region	five_prime_cis_splice_site
SO:0000673	SO:0000185	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000163	"Intronic 2 bp region bordering the exon, at the 5' edge of the intron. A splice_site that is downstream_adjacent_to exon and starts intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	4001058	SOFA	SOFA	sequence	5	SO	transcript	five_prime_cis_splice_site
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000163	"Intronic 2 bp region bordering the exon, at the 5' edge of the intron. A splice_site that is downstream_adjacent_to exon and starts intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	4001059	SOFA	SOFA	sequence	5	SO	transcript	five_prime_cis_splice_site
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000163	"Intronic 2 bp region bordering the exon, at the 5' edge of the intron. A splice_site that is downstream_adjacent_to exon and starts intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	4001060	SOFA	SOFA	sequence	5	SO	biological_region	five_prime_cis_splice_site
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000163	"Intronic 2 bp region bordering the exon, at the 5' edge of the intron. A splice_site that is downstream_adjacent_to exon and starts intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	4965700	SOFA	SOFA	sequence	6	SO	gene_member_region	five_prime_cis_splice_site
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000163	"Intronic 2 bp region bordering the exon, at the 5' edge of the intron. A splice_site that is downstream_adjacent_to exon and starts intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	6310735	SOFA	SOFA	sequence	8	SO	region	five_prime_cis_splice_site
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000163	"Intronic 2 bp region bordering the exon, at the 5' edge of the intron. A splice_site that is downstream_adjacent_to exon and starts intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	5740713	SOFA	SOFA	sequence	7	SO	biological_region	five_prime_cis_splice_site
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000163	"Intronic 2 bp region bordering the exon, at the 5' edge of the intron. A splice_site that is downstream_adjacent_to exon and starts intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	6550232	SOFA	SOFA	sequence	9	SO	sequence_feature	five_prime_cis_splice_site
SO:0000164	\N	SOFA	"Intronic 2 bp region bordering the exon, at the 3' edge of the intron. A splice_site that is upstream_adjacent_to exon and finishes intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	SO:0000164	"Intronic 2 bp region bordering the exon, at the 3' edge of the intron. A splice_site that is upstream_adjacent_to exon and finishes intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	45135	\N	SOFA	sequence	0	SO	three_prime_cis_splice_site	three_prime_cis_splice_site
SO:0001419	SO:0000164	SOFA	"Intronic 2 bp region bordering exon. A splice_site that adjacent_to exon and overlaps intron." [SO:cjm, SO:ke]	SO:0000164	"Intronic 2 bp region bordering the exon, at the 3' edge of the intron. A splice_site that is upstream_adjacent_to exon and finishes intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	489723	SOFA	SOFA	sequence	1	SO	cis_splice_site	three_prime_cis_splice_site
SO:0000162	SO:0001419	SOFA	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	SO:0000164	"Intronic 2 bp region bordering the exon, at the 3' edge of the intron. A splice_site that is upstream_adjacent_to exon and finishes intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	1072153	SOFA	SOFA	sequence	2	SO	splice_site	three_prime_cis_splice_site
SO:0000835	SO:0000162	SOFA	"A part of a primary transcript." [SO:ke]	SO:0000164	"Intronic 2 bp region bordering the exon, at the 3' edge of the intron. A splice_site that is upstream_adjacent_to exon and finishes intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	1903175	SOFA	SOFA	sequence	3	SO	primary_transcript_region	three_prime_cis_splice_site
SO:0000185	SO:0000835	SOFA	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000164	"Intronic 2 bp region bordering the exon, at the 3' edge of the intron. A splice_site that is upstream_adjacent_to exon and finishes intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	2927651	SOFA	SOFA	sequence	4	SO	primary_transcript	three_prime_cis_splice_site
SO:0000833	SO:0000835	SOFA	"A region of a transcript." [SO:ke]	SO:0000164	"Intronic 2 bp region bordering the exon, at the 3' edge of the intron. A splice_site that is upstream_adjacent_to exon and finishes intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	2927652	SOFA	SOFA	sequence	4	SO	transcript_region	three_prime_cis_splice_site
SO:0000673	SO:0000185	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000164	"Intronic 2 bp region bordering the exon, at the 3' edge of the intron. A splice_site that is upstream_adjacent_to exon and finishes intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	4001061	SOFA	SOFA	sequence	5	SO	transcript	three_prime_cis_splice_site
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000164	"Intronic 2 bp region bordering the exon, at the 3' edge of the intron. A splice_site that is upstream_adjacent_to exon and finishes intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	4001062	SOFA	SOFA	sequence	5	SO	transcript	three_prime_cis_splice_site
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000164	"Intronic 2 bp region bordering the exon, at the 3' edge of the intron. A splice_site that is upstream_adjacent_to exon and finishes intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	4001063	SOFA	SOFA	sequence	5	SO	biological_region	three_prime_cis_splice_site
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000164	"Intronic 2 bp region bordering the exon, at the 3' edge of the intron. A splice_site that is upstream_adjacent_to exon and finishes intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	4965702	SOFA	SOFA	sequence	6	SO	gene_member_region	three_prime_cis_splice_site
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000164	"Intronic 2 bp region bordering the exon, at the 3' edge of the intron. A splice_site that is upstream_adjacent_to exon and finishes intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	6310736	SOFA	SOFA	sequence	8	SO	region	three_prime_cis_splice_site
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000164	"Intronic 2 bp region bordering the exon, at the 3' edge of the intron. A splice_site that is upstream_adjacent_to exon and finishes intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	5740715	SOFA	SOFA	sequence	7	SO	biological_region	three_prime_cis_splice_site
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000164	"Intronic 2 bp region bordering the exon, at the 3' edge of the intron. A splice_site that is upstream_adjacent_to exon and finishes intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	6550233	SOFA	SOFA	sequence	9	SO	sequence_feature	three_prime_cis_splice_site
SO:0000165	\N	SOFA	"A cis-acting sequence that increases the utilization of (some) eukaryotic promoters, and can function in either orientation and in any location (upstream or downstream) relative to the promoter." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000165	"A cis-acting sequence that increases the utilization of (some) eukaryotic promoters, and can function in either orientation and in any location (upstream or downstream) relative to the promoter." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	45136	\N	SOFA	sequence	0	SO	enhancer	enhancer
SO:0000727	SO:0000165	SOFA	"A regulatory region where transcription factor binding sites clustered to regulate various aspects of transcription activities. (CRMs can be located a few kb to hundred kb upstream of the basal promoter, in the coding sequence, within introns, or in the downstream 3'UTR sequences, as well as on different chromosome). A single gene can be regulated by multiple CRMs to give precise control of its spatial and temporal expression. CRMs function as nodes in large, intertwined regulatory network." [PMID:19660565, SO:SG]	SO:0000165	"A cis-acting sequence that increases the utilization of (some) eukaryotic promoters, and can function in either orientation and in any location (upstream or downstream) relative to the promoter." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	489724	SOFA	SOFA	sequence	1	SO	CRM	enhancer
SO:0001055	SO:0000727	SOFA	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0000165	"A cis-acting sequence that increases the utilization of (some) eukaryotic promoters, and can function in either orientation and in any location (upstream or downstream) relative to the promoter." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072154	SOFA	SOFA	sequence	2	SO	transcriptional_cis_regulatory_region	enhancer
SO:0001679	SO:0001055	SOFA	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000165	"A cis-acting sequence that increases the utilization of (some) eukaryotic promoters, and can function in either orientation and in any location (upstream or downstream) relative to the promoter." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903176	SOFA	SOFA	sequence	3	SO	transcription_regulatory_region	enhancer
SO:0005836	SO:0001679	SOFA	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000165	"A cis-acting sequence that increases the utilization of (some) eukaryotic promoters, and can function in either orientation and in any location (upstream or downstream) relative to the promoter." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2927653	SOFA	SOFA	sequence	4	SO	regulatory_region	enhancer
SO:0000831	SO:0005836	SOFA	"A region of a gene." [SO:ke]	SO:0000165	"A cis-acting sequence that increases the utilization of (some) eukaryotic promoters, and can function in either orientation and in any location (upstream or downstream) relative to the promoter." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4001064	SOFA	SOFA	sequence	5	SO	gene_member_region	enhancer
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000165	"A cis-acting sequence that increases the utilization of (some) eukaryotic promoters, and can function in either orientation and in any location (upstream or downstream) relative to the promoter." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4965704	SOFA	SOFA	sequence	6	SO	biological_region	enhancer
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000165	"A cis-acting sequence that increases the utilization of (some) eukaryotic promoters, and can function in either orientation and in any location (upstream or downstream) relative to the promoter." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	5740717	SOFA	SOFA	sequence	7	SO	region	enhancer
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000165	"A cis-acting sequence that increases the utilization of (some) eukaryotic promoters, and can function in either orientation and in any location (upstream or downstream) relative to the promoter." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	6310737	SOFA	SOFA	sequence	8	SO	sequence_feature	enhancer
SO:0000166	\N	\N	"An enhancer bound by a factor." [SO:xp]	SO:0000166	"An enhancer bound by a factor." [SO:xp]	45137	\N	\N	sequence	0	SO	enhancer_bound_by_factor	enhancer_bound_by_factor
SO:0000165	SO:0000166	\N	"A cis-acting sequence that increases the utilization of (some) eukaryotic promoters, and can function in either orientation and in any location (upstream or downstream) relative to the promoter." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000166	"An enhancer bound by a factor." [SO:xp]	489725	\N	SOFA	sequence	1	SO	enhancer	enhancer_bound_by_factor
SO:0000727	SO:0000165	\N	"A regulatory region where transcription factor binding sites clustered to regulate various aspects of transcription activities. (CRMs can be located a few kb to hundred kb upstream of the basal promoter, in the coding sequence, within introns, or in the downstream 3'UTR sequences, as well as on different chromosome). A single gene can be regulated by multiple CRMs to give precise control of its spatial and temporal expression. CRMs function as nodes in large, intertwined regulatory network." [PMID:19660565, SO:SG]	SO:0000166	"An enhancer bound by a factor." [SO:xp]	1072155	SOFA	SOFA	sequence	2	SO	CRM	enhancer_bound_by_factor
SO:0001055	SO:0000727	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0000166	"An enhancer bound by a factor." [SO:xp]	1903177	SOFA	SOFA	sequence	3	SO	transcriptional_cis_regulatory_region	enhancer_bound_by_factor
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000166	"An enhancer bound by a factor." [SO:xp]	2927654	SOFA	SOFA	sequence	4	SO	transcription_regulatory_region	enhancer_bound_by_factor
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000166	"An enhancer bound by a factor." [SO:xp]	4001065	SOFA	SOFA	sequence	5	SO	regulatory_region	enhancer_bound_by_factor
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0000166	"An enhancer bound by a factor." [SO:xp]	4965705	SOFA	SOFA	sequence	6	SO	gene_member_region	enhancer_bound_by_factor
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000166	"An enhancer bound by a factor." [SO:xp]	5740718	SOFA	SOFA	sequence	7	SO	biological_region	enhancer_bound_by_factor
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000166	"An enhancer bound by a factor." [SO:xp]	6310738	SOFA	SOFA	sequence	8	SO	region	enhancer_bound_by_factor
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000166	"An enhancer bound by a factor." [SO:xp]	6699217	SOFA	SOFA	sequence	9	SO	sequence_feature	enhancer_bound_by_factor
SO:0000167	\N	SOFA	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0000167	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	45138	\N	SOFA	sequence	0	SO	promoter	promoter
SO:0001055	SO:0000167	SOFA	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0000167	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	489726	SOFA	SOFA	sequence	1	SO	transcriptional_cis_regulatory_region	promoter
SO:0001679	SO:0001055	SOFA	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000167	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	1072156	SOFA	SOFA	sequence	2	SO	transcription_regulatory_region	promoter
SO:0005836	SO:0001679	SOFA	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000167	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	1903178	SOFA	SOFA	sequence	3	SO	regulatory_region	promoter
SO:0000831	SO:0005836	SOFA	"A region of a gene." [SO:ke]	SO:0000167	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	2927655	SOFA	SOFA	sequence	4	SO	gene_member_region	promoter
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000167	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	4001066	SOFA	SOFA	sequence	5	SO	biological_region	promoter
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000167	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	4965706	SOFA	SOFA	sequence	6	SO	region	promoter
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000167	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	5740719	SOFA	SOFA	sequence	7	SO	sequence_feature	promoter
SO:0000169	\N	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase I binds, to begin transcription." [SO:ke]	SO:0000169	"A DNA sequence in eukaryotic DNA to which RNA polymerase I binds, to begin transcription." [SO:ke]	45139	\N	\N	sequence	0	SO	RNApol_I_promoter	RNApol_I_promoter
SO:0001203	SO:0000169	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0000169	"A DNA sequence in eukaryotic DNA to which RNA polymerase I binds, to begin transcription." [SO:ke]	489727	\N	\N	sequence	1	SO	RNA_polymerase_promoter	RNApol_I_promoter
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0000169	"A DNA sequence in eukaryotic DNA to which RNA polymerase I binds, to begin transcription." [SO:ke]	1072157	\N	SOFA	sequence	2	SO	promoter	RNApol_I_promoter
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0000169	"A DNA sequence in eukaryotic DNA to which RNA polymerase I binds, to begin transcription." [SO:ke]	1903179	SOFA	SOFA	sequence	3	SO	transcriptional_cis_regulatory_region	RNApol_I_promoter
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000169	"A DNA sequence in eukaryotic DNA to which RNA polymerase I binds, to begin transcription." [SO:ke]	2927656	SOFA	SOFA	sequence	4	SO	transcription_regulatory_region	RNApol_I_promoter
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000169	"A DNA sequence in eukaryotic DNA to which RNA polymerase I binds, to begin transcription." [SO:ke]	4001067	SOFA	SOFA	sequence	5	SO	regulatory_region	RNApol_I_promoter
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0000169	"A DNA sequence in eukaryotic DNA to which RNA polymerase I binds, to begin transcription." [SO:ke]	4965707	SOFA	SOFA	sequence	6	SO	gene_member_region	RNApol_I_promoter
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000169	"A DNA sequence in eukaryotic DNA to which RNA polymerase I binds, to begin transcription." [SO:ke]	5740720	SOFA	SOFA	sequence	7	SO	biological_region	RNApol_I_promoter
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000169	"A DNA sequence in eukaryotic DNA to which RNA polymerase I binds, to begin transcription." [SO:ke]	6310739	SOFA	SOFA	sequence	8	SO	region	RNApol_I_promoter
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000169	"A DNA sequence in eukaryotic DNA to which RNA polymerase I binds, to begin transcription." [SO:ke]	6699218	SOFA	SOFA	sequence	9	SO	sequence_feature	RNApol_I_promoter
SO:0000170	\N	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	SO:0000170	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	45140	\N	\N	sequence	0	SO	RNApol_II_promoter	RNApol_II_promoter
SO:0001203	SO:0000170	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0000170	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	489728	\N	\N	sequence	1	SO	RNA_polymerase_promoter	RNApol_II_promoter
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0000170	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	1072158	\N	SOFA	sequence	2	SO	promoter	RNApol_II_promoter
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0000170	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	1903180	SOFA	SOFA	sequence	3	SO	transcriptional_cis_regulatory_region	RNApol_II_promoter
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000170	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	2927657	SOFA	SOFA	sequence	4	SO	transcription_regulatory_region	RNApol_II_promoter
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000170	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	4001068	SOFA	SOFA	sequence	5	SO	regulatory_region	RNApol_II_promoter
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0000170	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	4965708	SOFA	SOFA	sequence	6	SO	gene_member_region	RNApol_II_promoter
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000170	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	5740721	SOFA	SOFA	sequence	7	SO	biological_region	RNApol_II_promoter
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000170	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	6310740	SOFA	SOFA	sequence	8	SO	region	RNApol_II_promoter
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000170	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	6699219	SOFA	SOFA	sequence	9	SO	sequence_feature	RNApol_II_promoter
SO:0000171	\N	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase III binds, to begin transcription." [SO:ke]	SO:0000171	"A DNA sequence in eukaryotic DNA to which RNA polymerase III binds, to begin transcription." [SO:ke]	45141	\N	\N	sequence	0	SO	RNApol_III_promoter	RNApol_III_promoter
SO:0001203	SO:0000171	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0000171	"A DNA sequence in eukaryotic DNA to which RNA polymerase III binds, to begin transcription." [SO:ke]	489729	\N	\N	sequence	1	SO	RNA_polymerase_promoter	RNApol_III_promoter
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0000171	"A DNA sequence in eukaryotic DNA to which RNA polymerase III binds, to begin transcription." [SO:ke]	1072159	\N	SOFA	sequence	2	SO	promoter	RNApol_III_promoter
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0000171	"A DNA sequence in eukaryotic DNA to which RNA polymerase III binds, to begin transcription." [SO:ke]	1903181	SOFA	SOFA	sequence	3	SO	transcriptional_cis_regulatory_region	RNApol_III_promoter
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000171	"A DNA sequence in eukaryotic DNA to which RNA polymerase III binds, to begin transcription." [SO:ke]	2927658	SOFA	SOFA	sequence	4	SO	transcription_regulatory_region	RNApol_III_promoter
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000171	"A DNA sequence in eukaryotic DNA to which RNA polymerase III binds, to begin transcription." [SO:ke]	4001069	SOFA	SOFA	sequence	5	SO	regulatory_region	RNApol_III_promoter
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0000171	"A DNA sequence in eukaryotic DNA to which RNA polymerase III binds, to begin transcription." [SO:ke]	4965709	SOFA	SOFA	sequence	6	SO	gene_member_region	RNApol_III_promoter
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000171	"A DNA sequence in eukaryotic DNA to which RNA polymerase III binds, to begin transcription." [SO:ke]	5740722	SOFA	SOFA	sequence	7	SO	biological_region	RNApol_III_promoter
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000171	"A DNA sequence in eukaryotic DNA to which RNA polymerase III binds, to begin transcription." [SO:ke]	6310741	SOFA	SOFA	sequence	8	SO	region	RNApol_III_promoter
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000171	"A DNA sequence in eukaryotic DNA to which RNA polymerase III binds, to begin transcription." [SO:ke]	6699220	SOFA	SOFA	sequence	9	SO	sequence_feature	RNApol_III_promoter
SO:0000172	\N	\N	"Part of a conserved sequence located about 75-bp upstream of the start point of eukaryotic transcription units which may be involved in RNA polymerase binding; consensus=GG(C|T)CAATCT." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000172	"Part of a conserved sequence located about 75-bp upstream of the start point of eukaryotic transcription units which may be involved in RNA polymerase binding; consensus=GG(C|T)CAATCT." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	45142	\N	\N	sequence	0	SO	CAAT_signal	CAAT_signal
SO:0000170	SO:0000172	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	SO:0000172	"Part of a conserved sequence located about 75-bp upstream of the start point of eukaryotic transcription units which may be involved in RNA polymerase binding; consensus=GG(C|T)CAATCT." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	489730	\N	\N	sequence	1	SO	RNApol_II_promoter	CAAT_signal
SO:0000713	SO:0000172	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0000172	"Part of a conserved sequence located about 75-bp upstream of the start point of eukaryotic transcription units which may be involved in RNA polymerase binding; consensus=GG(C|T)CAATCT." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	489731	\N	\N	sequence	1	SO	DNA_motif	CAAT_signal
SO:0001203	SO:0000170	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0000172	"Part of a conserved sequence located about 75-bp upstream of the start point of eukaryotic transcription units which may be involved in RNA polymerase binding; consensus=GG(C|T)CAATCT." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072160	\N	\N	sequence	2	SO	RNA_polymerase_promoter	CAAT_signal
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0000172	"Part of a conserved sequence located about 75-bp upstream of the start point of eukaryotic transcription units which may be involved in RNA polymerase binding; consensus=GG(C|T)CAATCT." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072161	\N	SOFA	sequence	2	SO	nucleotide_motif	CAAT_signal
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0000172	"Part of a conserved sequence located about 75-bp upstream of the start point of eukaryotic transcription units which may be involved in RNA polymerase binding; consensus=GG(C|T)CAATCT." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903182	\N	SOFA	sequence	3	SO	promoter	CAAT_signal
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0000172	"Part of a conserved sequence located about 75-bp upstream of the start point of eukaryotic transcription units which may be involved in RNA polymerase binding; consensus=GG(C|T)CAATCT." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903183	SOFA	SOFA	sequence	3	SO	sequence_motif	CAAT_signal
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0000172	"Part of a conserved sequence located about 75-bp upstream of the start point of eukaryotic transcription units which may be involved in RNA polymerase binding; consensus=GG(C|T)CAATCT." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2927659	SOFA	SOFA	sequence	4	SO	transcriptional_cis_regulatory_region	CAAT_signal
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000172	"Part of a conserved sequence located about 75-bp upstream of the start point of eukaryotic transcription units which may be involved in RNA polymerase binding; consensus=GG(C|T)CAATCT." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2927660	SOFA	SOFA	sequence	4	SO	biological_region	CAAT_signal
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000172	"Part of a conserved sequence located about 75-bp upstream of the start point of eukaryotic transcription units which may be involved in RNA polymerase binding; consensus=GG(C|T)CAATCT." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4001070	SOFA	SOFA	sequence	5	SO	transcription_regulatory_region	CAAT_signal
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000172	"Part of a conserved sequence located about 75-bp upstream of the start point of eukaryotic transcription units which may be involved in RNA polymerase binding; consensus=GG(C|T)CAATCT." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	6699221	SOFA	SOFA	sequence	9	SO	region	CAAT_signal
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000172	"Part of a conserved sequence located about 75-bp upstream of the start point of eukaryotic transcription units which may be involved in RNA polymerase binding; consensus=GG(C|T)CAATCT." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4965710	SOFA	SOFA	sequence	6	SO	regulatory_region	CAAT_signal
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000172	"Part of a conserved sequence located about 75-bp upstream of the start point of eukaryotic transcription units which may be involved in RNA polymerase binding; consensus=GG(C|T)CAATCT." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	6807568	SOFA	SOFA	sequence	10	SO	sequence_feature	CAAT_signal
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0000172	"Part of a conserved sequence located about 75-bp upstream of the start point of eukaryotic transcription units which may be involved in RNA polymerase binding; consensus=GG(C|T)CAATCT." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	5740723	SOFA	SOFA	sequence	7	SO	gene_member_region	CAAT_signal
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000172	"Part of a conserved sequence located about 75-bp upstream of the start point of eukaryotic transcription units which may be involved in RNA polymerase binding; consensus=GG(C|T)CAATCT." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	6310742	SOFA	SOFA	sequence	8	SO	biological_region	CAAT_signal
SO:0000173	\N	\N	"A conserved GC-rich region located upstream of the start point of eukaryotic transcription units which may occur in multiple copies or in either orientation; consensus=GGGCGG." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000173	"A conserved GC-rich region located upstream of the start point of eukaryotic transcription units which may occur in multiple copies or in either orientation; consensus=GGGCGG." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	45143	\N	\N	sequence	0	SO	GC_rich_promoter_region	GC_rich_promoter_region
SO:0000170	SO:0000173	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	SO:0000173	"A conserved GC-rich region located upstream of the start point of eukaryotic transcription units which may occur in multiple copies or in either orientation; consensus=GGGCGG." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	489732	\N	\N	sequence	1	SO	RNApol_II_promoter	GC_rich_promoter_region
SO:0001659	SO:0000173	\N	"" []	SO:0000173	"A conserved GC-rich region located upstream of the start point of eukaryotic transcription units which may occur in multiple copies or in either orientation; consensus=GGGCGG." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	489733	\N	\N	sequence	1	SO	promoter_element	GC_rich_promoter_region
SO:0001203	SO:0000170	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0000173	"A conserved GC-rich region located upstream of the start point of eukaryotic transcription units which may occur in multiple copies or in either orientation; consensus=GGGCGG." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072162	\N	\N	sequence	2	SO	RNA_polymerase_promoter	GC_rich_promoter_region
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0000173	"A conserved GC-rich region located upstream of the start point of eukaryotic transcription units which may occur in multiple copies or in either orientation; consensus=GGGCGG." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072163	\N	\N	sequence	2	SO	DNA_motif	GC_rich_promoter_region
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0000173	"A conserved GC-rich region located upstream of the start point of eukaryotic transcription units which may occur in multiple copies or in either orientation; consensus=GGGCGG." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903184	\N	SOFA	sequence	3	SO	promoter	GC_rich_promoter_region
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0000173	"A conserved GC-rich region located upstream of the start point of eukaryotic transcription units which may occur in multiple copies or in either orientation; consensus=GGGCGG." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903185	\N	SOFA	sequence	3	SO	nucleotide_motif	GC_rich_promoter_region
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0000173	"A conserved GC-rich region located upstream of the start point of eukaryotic transcription units which may occur in multiple copies or in either orientation; consensus=GGGCGG." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2927661	SOFA	SOFA	sequence	4	SO	transcriptional_cis_regulatory_region	GC_rich_promoter_region
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0000173	"A conserved GC-rich region located upstream of the start point of eukaryotic transcription units which may occur in multiple copies or in either orientation; consensus=GGGCGG." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2927662	SOFA	SOFA	sequence	4	SO	sequence_motif	GC_rich_promoter_region
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000173	"A conserved GC-rich region located upstream of the start point of eukaryotic transcription units which may occur in multiple copies or in either orientation; consensus=GGGCGG." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4001072	SOFA	SOFA	sequence	5	SO	transcription_regulatory_region	GC_rich_promoter_region
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000173	"A conserved GC-rich region located upstream of the start point of eukaryotic transcription units which may occur in multiple copies or in either orientation; consensus=GGGCGG." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4001073	SOFA	SOFA	sequence	5	SO	biological_region	GC_rich_promoter_region
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000173	"A conserved GC-rich region located upstream of the start point of eukaryotic transcription units which may occur in multiple copies or in either orientation; consensus=GGGCGG." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4965712	SOFA	SOFA	sequence	6	SO	regulatory_region	GC_rich_promoter_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000173	"A conserved GC-rich region located upstream of the start point of eukaryotic transcription units which may occur in multiple copies or in either orientation; consensus=GGGCGG." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	6699222	SOFA	SOFA	sequence	9	SO	region	GC_rich_promoter_region
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0000173	"A conserved GC-rich region located upstream of the start point of eukaryotic transcription units which may occur in multiple copies or in either orientation; consensus=GGGCGG." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	5740724	SOFA	SOFA	sequence	7	SO	gene_member_region	GC_rich_promoter_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000173	"A conserved GC-rich region located upstream of the start point of eukaryotic transcription units which may occur in multiple copies or in either orientation; consensus=GGGCGG." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	6848173	SOFA	SOFA	sequence	10	SO	sequence_feature	GC_rich_promoter_region
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000173	"A conserved GC-rich region located upstream of the start point of eukaryotic transcription units which may occur in multiple copies or in either orientation; consensus=GGGCGG." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	6310743	SOFA	SOFA	sequence	8	SO	biological_region	GC_rich_promoter_region
SO:0000174	\N	\N	"A conserved AT-rich septamer found about 25-bp before the start point of many eukaryotic RNA polymerase II transcript units; may be involved in positioning the enzyme for correct initiation; consensus=TATA(A|T)A(A|T)." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:16858867]	SO:0000174	"A conserved AT-rich septamer found about 25-bp before the start point of many eukaryotic RNA polymerase II transcript units; may be involved in positioning the enzyme for correct initiation; consensus=TATA(A|T)A(A|T)." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:16858867]	45144	\N	\N	sequence	0	SO	TATA_box	TATA_box
SO:0001660	SO:0000174	\N	"" []	SO:0000174	"A conserved AT-rich septamer found about 25-bp before the start point of many eukaryotic RNA polymerase II transcript units; may be involved in positioning the enzyme for correct initiation; consensus=TATA(A|T)A(A|T)." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:16858867]	489734	\N	\N	sequence	1	SO	core_promoter_element	TATA_box
SO:0001659	SO:0001660	\N	"" []	SO:0000174	"A conserved AT-rich septamer found about 25-bp before the start point of many eukaryotic RNA polymerase II transcript units; may be involved in positioning the enzyme for correct initiation; consensus=TATA(A|T)A(A|T)." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:16858867]	1072164	\N	\N	sequence	2	SO	promoter_element	TATA_box
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0000174	"A conserved AT-rich septamer found about 25-bp before the start point of many eukaryotic RNA polymerase II transcript units; may be involved in positioning the enzyme for correct initiation; consensus=TATA(A|T)A(A|T)." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:16858867]	1903186	\N	\N	sequence	3	SO	DNA_motif	TATA_box
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0000174	"A conserved AT-rich septamer found about 25-bp before the start point of many eukaryotic RNA polymerase II transcript units; may be involved in positioning the enzyme for correct initiation; consensus=TATA(A|T)A(A|T)." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:16858867]	2927663	\N	SOFA	sequence	4	SO	nucleotide_motif	TATA_box
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0000174	"A conserved AT-rich septamer found about 25-bp before the start point of many eukaryotic RNA polymerase II transcript units; may be involved in positioning the enzyme for correct initiation; consensus=TATA(A|T)A(A|T)." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:16858867]	4001074	SOFA	SOFA	sequence	5	SO	sequence_motif	TATA_box
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000174	"A conserved AT-rich septamer found about 25-bp before the start point of many eukaryotic RNA polymerase II transcript units; may be involved in positioning the enzyme for correct initiation; consensus=TATA(A|T)A(A|T)." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:16858867]	4965714	SOFA	SOFA	sequence	6	SO	biological_region	TATA_box
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000174	"A conserved AT-rich septamer found about 25-bp before the start point of many eukaryotic RNA polymerase II transcript units; may be involved in positioning the enzyme for correct initiation; consensus=TATA(A|T)A(A|T)." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:16858867]	5740726	SOFA	SOFA	sequence	7	SO	region	TATA_box
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000174	"A conserved AT-rich septamer found about 25-bp before the start point of many eukaryotic RNA polymerase II transcript units; may be involved in positioning the enzyme for correct initiation; consensus=TATA(A|T)A(A|T)." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:16858867]	6310744	SOFA	SOFA	sequence	8	SO	sequence_feature	TATA_box
SO:0000175	\N	\N	"A conserved region about 10-bp upstream of the start point of bacterial transcription units which may be involved in binding RNA polymerase; consensus=TAtAaT. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000175	"A conserved region about 10-bp upstream of the start point of bacterial transcription units which may be involved in binding RNA polymerase; consensus=TAtAaT. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	45145	\N	\N	sequence	0	SO	minus_10_signal	minus_10_signal
SO:0000713	SO:0000175	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0000175	"A conserved region about 10-bp upstream of the start point of bacterial transcription units which may be involved in binding RNA polymerase; consensus=TAtAaT. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	489735	\N	\N	sequence	1	SO	DNA_motif	minus_10_signal
SO:0001671	SO:0000175	\N	"" []	SO:0000175	"A conserved region about 10-bp upstream of the start point of bacterial transcription units which may be involved in binding RNA polymerase; consensus=TAtAaT. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	489736	\N	\N	sequence	1	SO	bacterial_RNApol_promoter_sigma_70	minus_10_signal
SO:0001913	SO:0000175	\N	"A bacterial promoter with sigma ecf factor binding dependency. This is a type of bacterial promoters that requires a sigma ECF factor to bind to identified -10 and -35 sequence regions in order to mediate binding of the RNA polymerase to the promoter region as part of transcription initiation." [Invitrogen:kc]	SO:0000175	"A conserved region about 10-bp upstream of the start point of bacterial transcription units which may be involved in binding RNA polymerase; consensus=TAtAaT. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	489737	\N	\N	sequence	1	SO	bacterial_RNApol_promoter_sigma_ecf	minus_10_signal
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0000175	"A conserved region about 10-bp upstream of the start point of bacterial transcription units which may be involved in binding RNA polymerase; consensus=TAtAaT. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072165	\N	SOFA	sequence	2	SO	nucleotide_motif	minus_10_signal
SO:0000613	SO:0001671	\N	"A DNA sequence to which bacterial RNA polymerase binds, to begin transcription." [SO:ke]	SO:0000175	"A conserved region about 10-bp upstream of the start point of bacterial transcription units which may be involved in binding RNA polymerase; consensus=TAtAaT. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072166	\N	\N	sequence	2	SO	bacterial_RNApol_promoter	minus_10_signal
SO:0000613	SO:0001913	\N	"A DNA sequence to which bacterial RNA polymerase binds, to begin transcription." [SO:ke]	SO:0000175	"A conserved region about 10-bp upstream of the start point of bacterial transcription units which may be involved in binding RNA polymerase; consensus=TAtAaT. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072167	\N	\N	sequence	2	SO	bacterial_RNApol_promoter	minus_10_signal
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0000175	"A conserved region about 10-bp upstream of the start point of bacterial transcription units which may be involved in binding RNA polymerase; consensus=TAtAaT. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903187	SOFA	SOFA	sequence	3	SO	sequence_motif	minus_10_signal
SO:0000752	SO:0000613	\N	"" []	SO:0000175	"A conserved region about 10-bp upstream of the start point of bacterial transcription units which may be involved in binding RNA polymerase; consensus=TAtAaT. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903188	\N	SOFA	sequence	3	SO	gene_group_regulatory_region	minus_10_signal
SO:0001203	SO:0000613	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0000175	"A conserved region about 10-bp upstream of the start point of bacterial transcription units which may be involved in binding RNA polymerase; consensus=TAtAaT. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903189	\N	\N	sequence	3	SO	RNA_polymerase_promoter	minus_10_signal
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000175	"A conserved region about 10-bp upstream of the start point of bacterial transcription units which may be involved in binding RNA polymerase; consensus=TAtAaT. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2927664	SOFA	SOFA	sequence	4	SO	biological_region	minus_10_signal
SO:0001679	SO:0000752	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000175	"A conserved region about 10-bp upstream of the start point of bacterial transcription units which may be involved in binding RNA polymerase; consensus=TAtAaT. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2927665	SOFA	SOFA	sequence	4	SO	transcription_regulatory_region	minus_10_signal
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0000175	"A conserved region about 10-bp upstream of the start point of bacterial transcription units which may be involved in binding RNA polymerase; consensus=TAtAaT. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2927666	\N	SOFA	sequence	4	SO	promoter	minus_10_signal
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000175	"A conserved region about 10-bp upstream of the start point of bacterial transcription units which may be involved in binding RNA polymerase; consensus=TAtAaT. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	6888922	SOFA	SOFA	sequence	10	SO	region	minus_10_signal
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000175	"A conserved region about 10-bp upstream of the start point of bacterial transcription units which may be involved in binding RNA polymerase; consensus=TAtAaT. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	5740728	SOFA	SOFA	sequence	7	SO	regulatory_region	minus_10_signal
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0000175	"A conserved region about 10-bp upstream of the start point of bacterial transcription units which may be involved in binding RNA polymerase; consensus=TAtAaT. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4001077	SOFA	SOFA	sequence	5	SO	transcriptional_cis_regulatory_region	minus_10_signal
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000175	"A conserved region about 10-bp upstream of the start point of bacterial transcription units which may be involved in binding RNA polymerase; consensus=TAtAaT. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	7029778	SOFA	SOFA	sequence	11	SO	sequence_feature	minus_10_signal
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0000175	"A conserved region about 10-bp upstream of the start point of bacterial transcription units which may be involved in binding RNA polymerase; consensus=TAtAaT. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	5996360	SOFA	SOFA	sequence	8	SO	gene_member_region	minus_10_signal
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000175	"A conserved region about 10-bp upstream of the start point of bacterial transcription units which may be involved in binding RNA polymerase; consensus=TAtAaT. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4965717	SOFA	SOFA	sequence	6	SO	transcription_regulatory_region	minus_10_signal
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000175	"A conserved region about 10-bp upstream of the start point of bacterial transcription units which may be involved in binding RNA polymerase; consensus=TAtAaT. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	6550234	SOFA	SOFA	sequence	9	SO	biological_region	minus_10_signal
SO:0000176	\N	\N	"A conserved hexamer about 35-bp upstream of the start point of bacterial transcription units; consensus=TTGACa or TGTTGACA. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000176	"A conserved hexamer about 35-bp upstream of the start point of bacterial transcription units; consensus=TTGACa or TGTTGACA. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	45146	\N	\N	sequence	0	SO	minus_35_signal	minus_35_signal
SO:0000713	SO:0000176	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0000176	"A conserved hexamer about 35-bp upstream of the start point of bacterial transcription units; consensus=TTGACa or TGTTGACA. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	489738	\N	\N	sequence	1	SO	DNA_motif	minus_35_signal
SO:0001671	SO:0000176	\N	"" []	SO:0000176	"A conserved hexamer about 35-bp upstream of the start point of bacterial transcription units; consensus=TTGACa or TGTTGACA. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	489739	\N	\N	sequence	1	SO	bacterial_RNApol_promoter_sigma_70	minus_35_signal
SO:0001913	SO:0000176	\N	"A bacterial promoter with sigma ecf factor binding dependency. This is a type of bacterial promoters that requires a sigma ECF factor to bind to identified -10 and -35 sequence regions in order to mediate binding of the RNA polymerase to the promoter region as part of transcription initiation." [Invitrogen:kc]	SO:0000176	"A conserved hexamer about 35-bp upstream of the start point of bacterial transcription units; consensus=TTGACa or TGTTGACA. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	489740	\N	\N	sequence	1	SO	bacterial_RNApol_promoter_sigma_ecf	minus_35_signal
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0000176	"A conserved hexamer about 35-bp upstream of the start point of bacterial transcription units; consensus=TTGACa or TGTTGACA. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072168	\N	SOFA	sequence	2	SO	nucleotide_motif	minus_35_signal
SO:0000613	SO:0001671	\N	"A DNA sequence to which bacterial RNA polymerase binds, to begin transcription." [SO:ke]	SO:0000176	"A conserved hexamer about 35-bp upstream of the start point of bacterial transcription units; consensus=TTGACa or TGTTGACA. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072169	\N	\N	sequence	2	SO	bacterial_RNApol_promoter	minus_35_signal
SO:0000613	SO:0001913	\N	"A DNA sequence to which bacterial RNA polymerase binds, to begin transcription." [SO:ke]	SO:0000176	"A conserved hexamer about 35-bp upstream of the start point of bacterial transcription units; consensus=TTGACa or TGTTGACA. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072170	\N	\N	sequence	2	SO	bacterial_RNApol_promoter	minus_35_signal
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0000176	"A conserved hexamer about 35-bp upstream of the start point of bacterial transcription units; consensus=TTGACa or TGTTGACA. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903190	SOFA	SOFA	sequence	3	SO	sequence_motif	minus_35_signal
SO:0000752	SO:0000613	\N	"" []	SO:0000176	"A conserved hexamer about 35-bp upstream of the start point of bacterial transcription units; consensus=TTGACa or TGTTGACA. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903191	\N	SOFA	sequence	3	SO	gene_group_regulatory_region	minus_35_signal
SO:0001203	SO:0000613	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0000176	"A conserved hexamer about 35-bp upstream of the start point of bacterial transcription units; consensus=TTGACa or TGTTGACA. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903192	\N	\N	sequence	3	SO	RNA_polymerase_promoter	minus_35_signal
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000176	"A conserved hexamer about 35-bp upstream of the start point of bacterial transcription units; consensus=TTGACa or TGTTGACA. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2927667	SOFA	SOFA	sequence	4	SO	biological_region	minus_35_signal
SO:0001679	SO:0000752	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000176	"A conserved hexamer about 35-bp upstream of the start point of bacterial transcription units; consensus=TTGACa or TGTTGACA. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2927668	SOFA	SOFA	sequence	4	SO	transcription_regulatory_region	minus_35_signal
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0000176	"A conserved hexamer about 35-bp upstream of the start point of bacterial transcription units; consensus=TTGACa or TGTTGACA. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2927669	\N	SOFA	sequence	4	SO	promoter	minus_35_signal
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000176	"A conserved hexamer about 35-bp upstream of the start point of bacterial transcription units; consensus=TTGACa or TGTTGACA. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	6888923	SOFA	SOFA	sequence	10	SO	region	minus_35_signal
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000176	"A conserved hexamer about 35-bp upstream of the start point of bacterial transcription units; consensus=TTGACa or TGTTGACA. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	5740730	SOFA	SOFA	sequence	7	SO	regulatory_region	minus_35_signal
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0000176	"A conserved hexamer about 35-bp upstream of the start point of bacterial transcription units; consensus=TTGACa or TGTTGACA. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4001080	SOFA	SOFA	sequence	5	SO	transcriptional_cis_regulatory_region	minus_35_signal
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000176	"A conserved hexamer about 35-bp upstream of the start point of bacterial transcription units; consensus=TTGACa or TGTTGACA. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	7029779	SOFA	SOFA	sequence	11	SO	sequence_feature	minus_35_signal
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0000176	"A conserved hexamer about 35-bp upstream of the start point of bacterial transcription units; consensus=TTGACa or TGTTGACA. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	5996361	SOFA	SOFA	sequence	8	SO	gene_member_region	minus_35_signal
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000176	"A conserved hexamer about 35-bp upstream of the start point of bacterial transcription units; consensus=TTGACa or TGTTGACA. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4965720	SOFA	SOFA	sequence	6	SO	transcription_regulatory_region	minus_35_signal
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000176	"A conserved hexamer about 35-bp upstream of the start point of bacterial transcription units; consensus=TTGACa or TGTTGACA. This region is associated with sigma factor 70." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	6550235	SOFA	SOFA	sequence	9	SO	biological_region	minus_35_signal
SO:0000177	\N	SOFA	"A nucleotide match against a sequence from another organism." [SO:ma]	SO:0000177	"A nucleotide match against a sequence from another organism." [SO:ma]	45147	\N	SOFA	sequence	0	SO	cross_genome_match	cross_genome_match
SO:0000347	SO:0000177	SOFA	"A match against a nucleotide sequence." [SO:ke]	SO:0000177	"A nucleotide match against a sequence from another organism." [SO:ma]	489741	SOFA	SOFA	sequence	1	SO	nucleotide_match	cross_genome_match
SO:0000343	SO:0000347	SOFA	"A region of sequence, aligned to another sequence with some statistical significance, using an algorithm such as BLAST or SIM4." [SO:ke]	SO:0000177	"A nucleotide match against a sequence from another organism." [SO:ma]	1072171	SOFA	SOFA	sequence	2	SO	match	cross_genome_match
SO:0001410	SO:0000343	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000177	"A nucleotide match against a sequence from another organism." [SO:ma]	1903193	SOFA	SOFA	sequence	3	SO	experimental_feature	cross_genome_match
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000177	"A nucleotide match against a sequence from another organism." [SO:ma]	2927670	SOFA	SOFA	sequence	4	SO	region	cross_genome_match
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000177	"A nucleotide match against a sequence from another organism." [SO:ma]	4001081	SOFA	SOFA	sequence	5	SO	sequence_feature	cross_genome_match
SO:0000178	\N	SOFA	"A group of contiguous genes transcribed as a single (polycistronic) mRNA from a single regulatory region." [SO:ma]	SO:0000178	"A group of contiguous genes transcribed as a single (polycistronic) mRNA from a single regulatory region." [SO:ma]	45148	\N	SOFA	sequence	0	SO	operon	operon
SO:0005855	SO:0000178	SOFA	"A collection of related genes." [SO:ma]	SO:0000178	"A group of contiguous genes transcribed as a single (polycistronic) mRNA from a single regulatory region." [SO:ma]	489742	SOFA	SOFA	sequence	1	SO	gene_group	operon
SO:0001411	SO:0005855	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000178	"A group of contiguous genes transcribed as a single (polycistronic) mRNA from a single regulatory region." [SO:ma]	1072172	SOFA	SOFA	sequence	2	SO	biological_region	operon
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000178	"A group of contiguous genes transcribed as a single (polycistronic) mRNA from a single regulatory region." [SO:ma]	1903194	SOFA	SOFA	sequence	3	SO	region	operon
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000178	"A group of contiguous genes transcribed as a single (polycistronic) mRNA from a single regulatory region." [SO:ma]	2927671	SOFA	SOFA	sequence	4	SO	sequence_feature	operon
SO:0000179	\N	SOFA	"The start of the clone insert." [SO:ke]	SO:0000179	"The start of the clone insert." [SO:ke]	45149	\N	SOFA	sequence	0	SO	clone_insert_start	clone_insert_start
SO:0000699	SO:0000179	SOFA	"A sequence_feature with an extent of zero." [SO:ke]	SO:0000179	"The start of the clone insert." [SO:ke]	489743	SOFA	SOFA	sequence	1	SO	junction	clone_insert_start
SO:0000753	SO:0000179	SOFA	"The region of sequence that has been inserted and is being propagated by the clone." [SO:ke]	SO:0000179	"The start of the clone insert." [SO:ke]	489744	SOFA	SOFA	sequence	1	SO	clone_insert	clone_insert_start
SO:0000110	SO:0000699	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000179	"The start of the clone insert." [SO:ke]	1072173	SOFA	SOFA	sequence	2	SO	sequence_feature	clone_insert_start
SO:0000151	SO:0000753	SOFA	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0000179	"The start of the clone insert." [SO:ke]	1072174	SOFA	SOFA	sequence	2	SO	clone	clone_insert_start
SO:0000695	SO:0000753	SOFA	"A sequence used in experiment." [SO:ke]	SO:0000179	"The start of the clone insert." [SO:ke]	1072175	SOFA	SOFA	sequence	2	SO	reagent	clone_insert_start
SO:0000695	SO:0000151	SOFA	"A sequence used in experiment." [SO:ke]	SO:0000179	"The start of the clone insert." [SO:ke]	1903195	SOFA	SOFA	sequence	3	SO	reagent	clone_insert_start
SO:0001409	SO:0000695	SOFA	"A region which is intended for use in an experiment." [SO:cb]	SO:0000179	"The start of the clone insert." [SO:ke]	2927672	SOFA	SOFA	sequence	4	SO	biomaterial_region	clone_insert_start
SO:0000001	SO:0001409	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000179	"The start of the clone insert." [SO:ke]	3173863	SOFA	SOFA	sequence	5	SO	region	clone_insert_start
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000179	"The start of the clone insert." [SO:ke]	4385709	SOFA	SOFA	sequence	6	SO	sequence_feature	clone_insert_start
SO:0000180	\N	\N	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	SO:0000180	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	45150	\N	\N	sequence	0	SO	retrotransposon	retrotransposon
SO:0000101	SO:0000180	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000180	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	489745	\N	SOFA	sequence	1	SO	transposable_element	retrotransposon
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000180	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	1072176	SOFA	SOFA	sequence	2	SO	integrated_mobile_genetic_element	retrotransposon
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000180	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	1903197	SOFA	SOFA	sequence	3	SO	mobile_genetic_element	retrotransposon
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000180	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	2927674	SOFA	SOFA	sequence	4	SO	biological_region	retrotransposon
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000180	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	4001083	SOFA	SOFA	sequence	5	SO	region	retrotransposon
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000180	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	4965721	SOFA	SOFA	sequence	6	SO	sequence_feature	retrotransposon
SO:0000181	\N	SOFA	"A match against a translated sequence." [SO:ke]	SO:0000181	"A match against a translated sequence." [SO:ke]	45151	\N	SOFA	sequence	0	SO	translated_nucleotide_match	translated_nucleotide_match
SO:0000347	SO:0000181	SOFA	"A match against a nucleotide sequence." [SO:ke]	SO:0000181	"A match against a translated sequence." [SO:ke]	489746	SOFA	SOFA	sequence	1	SO	nucleotide_match	translated_nucleotide_match
SO:0000343	SO:0000347	SOFA	"A region of sequence, aligned to another sequence with some statistical significance, using an algorithm such as BLAST or SIM4." [SO:ke]	SO:0000181	"A match against a translated sequence." [SO:ke]	1072177	SOFA	SOFA	sequence	2	SO	match	translated_nucleotide_match
SO:0001410	SO:0000343	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000181	"A match against a translated sequence." [SO:ke]	1903198	SOFA	SOFA	sequence	3	SO	experimental_feature	translated_nucleotide_match
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000181	"A match against a translated sequence." [SO:ke]	2927675	SOFA	SOFA	sequence	4	SO	region	translated_nucleotide_match
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000181	"A match against a translated sequence." [SO:ke]	4001084	SOFA	SOFA	sequence	5	SO	sequence_feature	translated_nucleotide_match
SO:0000182	\N	\N	"A transposon where the mechanism of transposition is via a DNA intermediate." [SO:ke]	SO:0000182	"A transposon where the mechanism of transposition is via a DNA intermediate." [SO:ke]	45152	\N	\N	sequence	0	SO	DNA_transposon	DNA_transposon
SO:0000101	SO:0000182	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000182	"A transposon where the mechanism of transposition is via a DNA intermediate." [SO:ke]	489747	\N	SOFA	sequence	1	SO	transposable_element	DNA_transposon
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000182	"A transposon where the mechanism of transposition is via a DNA intermediate." [SO:ke]	1072178	SOFA	SOFA	sequence	2	SO	integrated_mobile_genetic_element	DNA_transposon
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000182	"A transposon where the mechanism of transposition is via a DNA intermediate." [SO:ke]	1903199	SOFA	SOFA	sequence	3	SO	mobile_genetic_element	DNA_transposon
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000182	"A transposon where the mechanism of transposition is via a DNA intermediate." [SO:ke]	2927676	SOFA	SOFA	sequence	4	SO	biological_region	DNA_transposon
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000182	"A transposon where the mechanism of transposition is via a DNA intermediate." [SO:ke]	4001085	SOFA	SOFA	sequence	5	SO	region	DNA_transposon
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000182	"A transposon where the mechanism of transposition is via a DNA intermediate." [SO:ke]	4965722	SOFA	SOFA	sequence	6	SO	sequence_feature	DNA_transposon
SO:0000183	\N	SOFA	"A region of the gene which is not transcribed." [SO:ke]	SO:0000183	"A region of the gene which is not transcribed." [SO:ke]	45153	\N	SOFA	sequence	0	SO	non_transcribed_region	non_transcribed_region
SO:0000842	SO:0000183	SOFA	"" []	SO:0000183	"A region of the gene which is not transcribed." [SO:ke]	489748	SOFA	SOFA	sequence	1	SO	gene_component_region	non_transcribed_region
SO:0000704	SO:0000842	SOFA	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000183	"A region of the gene which is not transcribed." [SO:ke]	1072179	SOFA	SOFA	sequence	2	SO	gene	non_transcribed_region
SO:0001411	SO:0000842	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000183	"A region of the gene which is not transcribed." [SO:ke]	1072180	SOFA	SOFA	sequence	2	SO	biological_region	non_transcribed_region
SO:0001411	SO:0000704	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000183	"A region of the gene which is not transcribed." [SO:ke]	1903200	SOFA	SOFA	sequence	3	SO	biological_region	non_transcribed_region
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000183	"A region of the gene which is not transcribed." [SO:ke]	2927677	SOFA	SOFA	sequence	4	SO	region	non_transcribed_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000183	"A region of the gene which is not transcribed." [SO:ke]	3173864	SOFA	SOFA	sequence	5	SO	sequence_feature	non_transcribed_region
SO:0000184	\N	\N	"A major type of spliceosomal intron spliced by the U2 spliceosome, that includes U1, U2, U4/U6 and U5 snRNAs." [PMID:9428511]	SO:0000184	"A major type of spliceosomal intron spliced by the U2 spliceosome, that includes U1, U2, U4/U6 and U5 snRNAs." [PMID:9428511]	45154	\N	\N	sequence	0	SO	U2_intron	U2_intron
SO:0000662	SO:0000184	\N	"An intron which is spliced by the spliceosome." [SO:ke]	SO:0000184	"A major type of spliceosomal intron spliced by the U2 spliceosome, that includes U1, U2, U4/U6 and U5 snRNAs." [PMID:9428511]	489749	\N	SOFA	sequence	1	SO	spliceosomal_intron	U2_intron
SO:0000188	SO:0000662	\N	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000184	"A major type of spliceosomal intron spliced by the U2 spliceosome, that includes U1, U2, U4/U6 and U5 snRNAs." [PMID:9428511]	1072181	SOFA	SOFA	sequence	2	SO	intron	U2_intron
SO:0000835	SO:0000188	\N	"A part of a primary transcript." [SO:ke]	SO:0000184	"A major type of spliceosomal intron spliced by the U2 spliceosome, that includes U1, U2, U4/U6 and U5 snRNAs." [PMID:9428511]	1903202	SOFA	SOFA	sequence	3	SO	primary_transcript_region	U2_intron
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000184	"A major type of spliceosomal intron spliced by the U2 spliceosome, that includes U1, U2, U4/U6 and U5 snRNAs." [PMID:9428511]	2927679	SOFA	SOFA	sequence	4	SO	primary_transcript	U2_intron
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0000184	"A major type of spliceosomal intron spliced by the U2 spliceosome, that includes U1, U2, U4/U6 and U5 snRNAs." [PMID:9428511]	2927680	SOFA	SOFA	sequence	4	SO	transcript_region	U2_intron
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000184	"A major type of spliceosomal intron spliced by the U2 spliceosome, that includes U1, U2, U4/U6 and U5 snRNAs." [PMID:9428511]	4001086	SOFA	SOFA	sequence	5	SO	transcript	U2_intron
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000184	"A major type of spliceosomal intron spliced by the U2 spliceosome, that includes U1, U2, U4/U6 and U5 snRNAs." [PMID:9428511]	4001087	SOFA	SOFA	sequence	5	SO	transcript	U2_intron
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000184	"A major type of spliceosomal intron spliced by the U2 spliceosome, that includes U1, U2, U4/U6 and U5 snRNAs." [PMID:9428511]	4001088	SOFA	SOFA	sequence	5	SO	biological_region	U2_intron
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000184	"A major type of spliceosomal intron spliced by the U2 spliceosome, that includes U1, U2, U4/U6 and U5 snRNAs." [PMID:9428511]	4965723	SOFA	SOFA	sequence	6	SO	gene_member_region	U2_intron
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000184	"A major type of spliceosomal intron spliced by the U2 spliceosome, that includes U1, U2, U4/U6 and U5 snRNAs." [PMID:9428511]	6310747	SOFA	SOFA	sequence	8	SO	region	U2_intron
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000184	"A major type of spliceosomal intron spliced by the U2 spliceosome, that includes U1, U2, U4/U6 and U5 snRNAs." [PMID:9428511]	5740731	SOFA	SOFA	sequence	7	SO	biological_region	U2_intron
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000184	"A major type of spliceosomal intron spliced by the U2 spliceosome, that includes U1, U2, U4/U6 and U5 snRNAs." [PMID:9428511]	6550236	SOFA	SOFA	sequence	9	SO	sequence_feature	U2_intron
SO:0000185	\N	SOFA	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000185	"A transcript that in its initial state requires modification to be functional." [SO:ma]	45155	\N	SOFA	sequence	0	SO	primary_transcript	primary_transcript
SO:0000673	SO:0000185	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000185	"A transcript that in its initial state requires modification to be functional." [SO:ma]	489750	SOFA	SOFA	sequence	1	SO	transcript	primary_transcript
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000185	"A transcript that in its initial state requires modification to be functional." [SO:ma]	1072182	SOFA	SOFA	sequence	2	SO	gene_member_region	primary_transcript
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000185	"A transcript that in its initial state requires modification to be functional." [SO:ma]	1903203	SOFA	SOFA	sequence	3	SO	biological_region	primary_transcript
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000185	"A transcript that in its initial state requires modification to be functional." [SO:ma]	2927681	SOFA	SOFA	sequence	4	SO	region	primary_transcript
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000185	"A transcript that in its initial state requires modification to be functional." [SO:ma]	4001089	SOFA	SOFA	sequence	5	SO	sequence_feature	primary_transcript
SO:0000186	\N	\N	"A retrotransposon flanked by long terminal repeat sequences." [SO:ke]	SO:0000186	"A retrotransposon flanked by long terminal repeat sequences." [SO:ke]	45156	\N	\N	sequence	0	SO	LTR_retrotransposon	LTR_retrotransposon
SO:0000180	SO:0000186	\N	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	SO:0000186	"A retrotransposon flanked by long terminal repeat sequences." [SO:ke]	489751	\N	\N	sequence	1	SO	retrotransposon	LTR_retrotransposon
SO:0000101	SO:0000180	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000186	"A retrotransposon flanked by long terminal repeat sequences." [SO:ke]	1072183	\N	SOFA	sequence	2	SO	transposable_element	LTR_retrotransposon
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000186	"A retrotransposon flanked by long terminal repeat sequences." [SO:ke]	1903204	SOFA	SOFA	sequence	3	SO	integrated_mobile_genetic_element	LTR_retrotransposon
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000186	"A retrotransposon flanked by long terminal repeat sequences." [SO:ke]	2927682	SOFA	SOFA	sequence	4	SO	mobile_genetic_element	LTR_retrotransposon
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000186	"A retrotransposon flanked by long terminal repeat sequences." [SO:ke]	4001090	SOFA	SOFA	sequence	5	SO	biological_region	LTR_retrotransposon
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000186	"A retrotransposon flanked by long terminal repeat sequences." [SO:ke]	4965725	SOFA	SOFA	sequence	6	SO	region	LTR_retrotransposon
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000186	"A retrotransposon flanked by long terminal repeat sequences." [SO:ke]	5740733	SOFA	SOFA	sequence	7	SO	sequence_feature	LTR_retrotransposon
SO:0000188	\N	SOFA	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000188	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	45157	\N	SOFA	sequence	0	SO	intron	intron
SO:0000835	SO:0000188	SOFA	"A part of a primary transcript." [SO:ke]	SO:0000188	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	489752	SOFA	SOFA	sequence	1	SO	primary_transcript_region	intron
SO:0000185	SO:0000835	SOFA	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000188	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072184	SOFA	SOFA	sequence	2	SO	primary_transcript	intron
SO:0000833	SO:0000835	SOFA	"A region of a transcript." [SO:ke]	SO:0000188	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072185	SOFA	SOFA	sequence	2	SO	transcript_region	intron
SO:0000673	SO:0000185	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000188	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903205	SOFA	SOFA	sequence	3	SO	transcript	intron
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000188	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903206	SOFA	SOFA	sequence	3	SO	transcript	intron
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000188	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903207	SOFA	SOFA	sequence	3	SO	biological_region	intron
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000188	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2927683	SOFA	SOFA	sequence	4	SO	gene_member_region	intron
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000188	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4965726	SOFA	SOFA	sequence	6	SO	region	intron
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000188	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4001091	SOFA	SOFA	sequence	5	SO	biological_region	intron
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000188	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	5180662	SOFA	SOFA	sequence	7	SO	sequence_feature	intron
SO:0000189	\N	\N	"A retrotransposon without long terminal repeat sequences." [SO:ke]	SO:0000189	"A retrotransposon without long terminal repeat sequences." [SO:ke]	45158	\N	\N	sequence	0	SO	non_LTR_retrotransposon	non_LTR_retrotransposon
SO:0000180	SO:0000189	\N	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	SO:0000189	"A retrotransposon without long terminal repeat sequences." [SO:ke]	489753	\N	\N	sequence	1	SO	retrotransposon	non_LTR_retrotransposon
SO:0000101	SO:0000180	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000189	"A retrotransposon without long terminal repeat sequences." [SO:ke]	1072186	\N	SOFA	sequence	2	SO	transposable_element	non_LTR_retrotransposon
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000189	"A retrotransposon without long terminal repeat sequences." [SO:ke]	1903208	SOFA	SOFA	sequence	3	SO	integrated_mobile_genetic_element	non_LTR_retrotransposon
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000189	"A retrotransposon without long terminal repeat sequences." [SO:ke]	2927685	SOFA	SOFA	sequence	4	SO	mobile_genetic_element	non_LTR_retrotransposon
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000189	"A retrotransposon without long terminal repeat sequences." [SO:ke]	4001093	SOFA	SOFA	sequence	5	SO	biological_region	non_LTR_retrotransposon
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000189	"A retrotransposon without long terminal repeat sequences." [SO:ke]	4965727	SOFA	SOFA	sequence	6	SO	region	non_LTR_retrotransposon
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000189	"A retrotransposon without long terminal repeat sequences." [SO:ke]	5740734	SOFA	SOFA	sequence	7	SO	sequence_feature	non_LTR_retrotransposon
SO:0000190	\N	\N	"" []	SO:0000190	"" []	45159	\N	\N	sequence	0	SO	five_prime_intron	five_prime_intron
SO:0000188	SO:0000190	\N	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000190	"" []	489754	\N	SOFA	sequence	1	SO	intron	five_prime_intron
SO:0000835	SO:0000188	\N	"A part of a primary transcript." [SO:ke]	SO:0000190	"" []	1072187	SOFA	SOFA	sequence	2	SO	primary_transcript_region	five_prime_intron
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000190	"" []	1903209	SOFA	SOFA	sequence	3	SO	primary_transcript	five_prime_intron
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0000190	"" []	1903210	SOFA	SOFA	sequence	3	SO	transcript_region	five_prime_intron
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000190	"" []	2927686	SOFA	SOFA	sequence	4	SO	transcript	five_prime_intron
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000190	"" []	2927687	SOFA	SOFA	sequence	4	SO	transcript	five_prime_intron
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000190	"" []	2927688	SOFA	SOFA	sequence	4	SO	biological_region	five_prime_intron
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000190	"" []	4001094	SOFA	SOFA	sequence	5	SO	gene_member_region	five_prime_intron
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000190	"" []	5740735	SOFA	SOFA	sequence	7	SO	region	five_prime_intron
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000190	"" []	4965728	SOFA	SOFA	sequence	6	SO	biological_region	five_prime_intron
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000190	"" []	5996362	SOFA	SOFA	sequence	8	SO	sequence_feature	five_prime_intron
SO:0000191	\N	\N	"" []	SO:0000191	"" []	45160	\N	\N	sequence	0	SO	interior_intron	interior_intron
SO:0000188	SO:0000191	\N	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000191	"" []	489755	\N	SOFA	sequence	1	SO	intron	interior_intron
SO:0000835	SO:0000188	\N	"A part of a primary transcript." [SO:ke]	SO:0000191	"" []	1072188	SOFA	SOFA	sequence	2	SO	primary_transcript_region	interior_intron
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000191	"" []	1903211	SOFA	SOFA	sequence	3	SO	primary_transcript	interior_intron
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0000191	"" []	1903212	SOFA	SOFA	sequence	3	SO	transcript_region	interior_intron
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000191	"" []	2927689	SOFA	SOFA	sequence	4	SO	transcript	interior_intron
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000191	"" []	2927690	SOFA	SOFA	sequence	4	SO	transcript	interior_intron
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000191	"" []	2927691	SOFA	SOFA	sequence	4	SO	biological_region	interior_intron
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000191	"" []	4001096	SOFA	SOFA	sequence	5	SO	gene_member_region	interior_intron
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000191	"" []	5740736	SOFA	SOFA	sequence	7	SO	region	interior_intron
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000191	"" []	4965730	SOFA	SOFA	sequence	6	SO	biological_region	interior_intron
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000191	"" []	5996363	SOFA	SOFA	sequence	8	SO	sequence_feature	interior_intron
SO:0000192	\N	\N	"" []	SO:0000192	"" []	45161	\N	\N	sequence	0	SO	three_prime_intron	three_prime_intron
SO:0000188	SO:0000192	\N	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000192	"" []	489756	\N	SOFA	sequence	1	SO	intron	three_prime_intron
SO:0000835	SO:0000188	\N	"A part of a primary transcript." [SO:ke]	SO:0000192	"" []	1072189	SOFA	SOFA	sequence	2	SO	primary_transcript_region	three_prime_intron
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000192	"" []	1903213	SOFA	SOFA	sequence	3	SO	primary_transcript	three_prime_intron
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0000192	"" []	1903214	SOFA	SOFA	sequence	3	SO	transcript_region	three_prime_intron
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000192	"" []	2927692	SOFA	SOFA	sequence	4	SO	transcript	three_prime_intron
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000192	"" []	2927693	SOFA	SOFA	sequence	4	SO	transcript	three_prime_intron
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000192	"" []	2927694	SOFA	SOFA	sequence	4	SO	biological_region	three_prime_intron
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000192	"" []	4001098	SOFA	SOFA	sequence	5	SO	gene_member_region	three_prime_intron
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000192	"" []	5740737	SOFA	SOFA	sequence	7	SO	region	three_prime_intron
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000192	"" []	4965732	SOFA	SOFA	sequence	6	SO	biological_region	three_prime_intron
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000192	"" []	5996364	SOFA	SOFA	sequence	8	SO	sequence_feature	three_prime_intron
SO:0000193	\N	SOFA	"A DNA fragment used as a reagent to detect the polymorphic genomic loci by hybridizing against the genomic DNA digested with a given restriction enzyme." [GOC:pj]	SO:0000193	"A DNA fragment used as a reagent to detect the polymorphic genomic loci by hybridizing against the genomic DNA digested with a given restriction enzyme." [GOC:pj]	45162	\N	SOFA	sequence	0	SO	RFLP_fragment	RFLP_fragment
SO:0000412	SO:0000193	SOFA	"A region of polynucleotide sequence produced by digestion with a restriction endonuclease." [SO:ke]	SO:0000193	"A DNA fragment used as a reagent to detect the polymorphic genomic loci by hybridizing against the genomic DNA digested with a given restriction enzyme." [GOC:pj]	489757	SOFA	SOFA	sequence	1	SO	restriction_fragment	RFLP_fragment
SO:0000143	SO:0000412	SOFA	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0000193	"A DNA fragment used as a reagent to detect the polymorphic genomic loci by hybridizing against the genomic DNA digested with a given restriction enzyme." [GOC:pj]	1072190	SOFA	SOFA	sequence	2	SO	assembly_component	RFLP_fragment
SO:0001410	SO:0000143	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000193	"A DNA fragment used as a reagent to detect the polymorphic genomic loci by hybridizing against the genomic DNA digested with a given restriction enzyme." [GOC:pj]	1903215	SOFA	SOFA	sequence	3	SO	experimental_feature	RFLP_fragment
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000193	"A DNA fragment used as a reagent to detect the polymorphic genomic loci by hybridizing against the genomic DNA digested with a given restriction enzyme." [GOC:pj]	2927695	SOFA	SOFA	sequence	4	SO	region	RFLP_fragment
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000193	"A DNA fragment used as a reagent to detect the polymorphic genomic loci by hybridizing against the genomic DNA digested with a given restriction enzyme." [GOC:pj]	4001100	SOFA	SOFA	sequence	5	SO	sequence_feature	RFLP_fragment
SO:0000194	\N	\N	"A dispersed repeat family with many copies, each from 1 to 6 kb long. New elements are generated by retroposition of a transcribed copy. Typically the LINE contains 2 ORF's one of which is reverse transcriptase, and 3'and 5' direct repeats." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	SO:0000194	"A dispersed repeat family with many copies, each from 1 to 6 kb long. New elements are generated by retroposition of a transcribed copy. Typically the LINE contains 2 ORF's one of which is reverse transcriptase, and 3'and 5' direct repeats." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	45163	\N	\N	sequence	0	SO	LINE_element	LINE_element
SO:0000189	SO:0000194	\N	"A retrotransposon without long terminal repeat sequences." [SO:ke]	SO:0000194	"A dispersed repeat family with many copies, each from 1 to 6 kb long. New elements are generated by retroposition of a transcribed copy. Typically the LINE contains 2 ORF's one of which is reverse transcriptase, and 3'and 5' direct repeats." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	489758	\N	\N	sequence	1	SO	non_LTR_retrotransposon	LINE_element
SO:0000180	SO:0000189	\N	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	SO:0000194	"A dispersed repeat family with many copies, each from 1 to 6 kb long. New elements are generated by retroposition of a transcribed copy. Typically the LINE contains 2 ORF's one of which is reverse transcriptase, and 3'and 5' direct repeats." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	1072191	\N	\N	sequence	2	SO	retrotransposon	LINE_element
SO:0000101	SO:0000180	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000194	"A dispersed repeat family with many copies, each from 1 to 6 kb long. New elements are generated by retroposition of a transcribed copy. Typically the LINE contains 2 ORF's one of which is reverse transcriptase, and 3'and 5' direct repeats." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	1903216	\N	SOFA	sequence	3	SO	transposable_element	LINE_element
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000194	"A dispersed repeat family with many copies, each from 1 to 6 kb long. New elements are generated by retroposition of a transcribed copy. Typically the LINE contains 2 ORF's one of which is reverse transcriptase, and 3'and 5' direct repeats." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	2927696	SOFA	SOFA	sequence	4	SO	integrated_mobile_genetic_element	LINE_element
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000194	"A dispersed repeat family with many copies, each from 1 to 6 kb long. New elements are generated by retroposition of a transcribed copy. Typically the LINE contains 2 ORF's one of which is reverse transcriptase, and 3'and 5' direct repeats." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	4001101	SOFA	SOFA	sequence	5	SO	mobile_genetic_element	LINE_element
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000194	"A dispersed repeat family with many copies, each from 1 to 6 kb long. New elements are generated by retroposition of a transcribed copy. Typically the LINE contains 2 ORF's one of which is reverse transcriptase, and 3'and 5' direct repeats." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	4965734	SOFA	SOFA	sequence	6	SO	biological_region	LINE_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000194	"A dispersed repeat family with many copies, each from 1 to 6 kb long. New elements are generated by retroposition of a transcribed copy. Typically the LINE contains 2 ORF's one of which is reverse transcriptase, and 3'and 5' direct repeats." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	5740738	SOFA	SOFA	sequence	7	SO	region	LINE_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000194	"A dispersed repeat family with many copies, each from 1 to 6 kb long. New elements are generated by retroposition of a transcribed copy. Typically the LINE contains 2 ORF's one of which is reverse transcriptase, and 3'and 5' direct repeats." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	6310748	SOFA	SOFA	sequence	8	SO	sequence_feature	LINE_element
SO:0000195	\N	SOFA	"An exon whereby at least one base is part of a codon (here, 'codon' is inclusive of the stop_codon)." [SO:ke]	SO:0000195	"An exon whereby at least one base is part of a codon (here, 'codon' is inclusive of the stop_codon)." [SO:ke]	45164	\N	SOFA	sequence	0	SO	coding_exon	coding_exon
SO:0000147	SO:0000195	SOFA	"A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing." [SO:ke]	SO:0000195	"An exon whereby at least one base is part of a codon (here, 'codon' is inclusive of the stop_codon)." [SO:ke]	489759	SOFA	SOFA	sequence	1	SO	exon	coding_exon
SO:0000833	SO:0000147	SOFA	"A region of a transcript." [SO:ke]	SO:0000195	"An exon whereby at least one base is part of a codon (here, 'codon' is inclusive of the stop_codon)." [SO:ke]	1072192	SOFA	SOFA	sequence	2	SO	transcript_region	coding_exon
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000195	"An exon whereby at least one base is part of a codon (here, 'codon' is inclusive of the stop_codon)." [SO:ke]	1903217	SOFA	SOFA	sequence	3	SO	transcript	coding_exon
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000195	"An exon whereby at least one base is part of a codon (here, 'codon' is inclusive of the stop_codon)." [SO:ke]	1903218	SOFA	SOFA	sequence	3	SO	biological_region	coding_exon
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000195	"An exon whereby at least one base is part of a codon (here, 'codon' is inclusive of the stop_codon)." [SO:ke]	2927697	SOFA	SOFA	sequence	4	SO	gene_member_region	coding_exon
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000195	"An exon whereby at least one base is part of a codon (here, 'codon' is inclusive of the stop_codon)." [SO:ke]	4965735	SOFA	SOFA	sequence	6	SO	region	coding_exon
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000195	"An exon whereby at least one base is part of a codon (here, 'codon' is inclusive of the stop_codon)." [SO:ke]	4001102	SOFA	SOFA	sequence	5	SO	biological_region	coding_exon
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000195	"An exon whereby at least one base is part of a codon (here, 'codon' is inclusive of the stop_codon)." [SO:ke]	5180663	SOFA	SOFA	sequence	7	SO	sequence_feature	coding_exon
SO:0000196	\N	SOFA	"The sequence of the five_prime_coding_exon that codes for protein." [SO:cjm]	SO:0000196	"The sequence of the five_prime_coding_exon that codes for protein." [SO:cjm]	45165	\N	SOFA	sequence	0	SO	five_prime_coding_exon_coding_region	five_prime_coding_exon_coding_region
SO:0000200	SO:0000196	SOFA	"The 5' most coding exon." [SO:ke]	SO:0000196	"The sequence of the five_prime_coding_exon that codes for protein." [SO:cjm]	489760	SOFA	SOFA	sequence	1	SO	five_prime_coding_exon	five_prime_coding_exon_coding_region
SO:0001215	SO:0000196	SOFA	"The region of an exon that encodes for protein sequence." [SO:ke]	SO:0000196	"The sequence of the five_prime_coding_exon that codes for protein." [SO:cjm]	489761	SOFA	SOFA	sequence	1	SO	coding_region_of_exon	five_prime_coding_exon_coding_region
SO:0000195	SO:0000200	SOFA	"An exon whereby at least one base is part of a codon (here, 'codon' is inclusive of the stop_codon)." [SO:ke]	SO:0000196	"The sequence of the five_prime_coding_exon that codes for protein." [SO:cjm]	1072193	SOFA	SOFA	sequence	2	SO	coding_exon	five_prime_coding_exon_coding_region
SO:0000852	SO:0001215	SOFA	"A region of an exon." [RSC:cb]	SO:0000196	"The sequence of the five_prime_coding_exon that codes for protein." [SO:cjm]	1072194	SOFA	SOFA	sequence	2	SO	exon_region	five_prime_coding_exon_coding_region
SO:0000147	SO:0000195	SOFA	"A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing." [SO:ke]	SO:0000196	"The sequence of the five_prime_coding_exon that codes for protein." [SO:cjm]	1903219	SOFA	SOFA	sequence	3	SO	exon	five_prime_coding_exon_coding_region
SO:0000147	SO:0000852	SOFA	"A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing." [SO:ke]	SO:0000196	"The sequence of the five_prime_coding_exon that codes for protein." [SO:cjm]	1903220	SOFA	SOFA	sequence	3	SO	exon	five_prime_coding_exon_coding_region
SO:0000833	SO:0000852	SOFA	"A region of a transcript." [SO:ke]	SO:0000196	"The sequence of the five_prime_coding_exon that codes for protein." [SO:cjm]	1903221	SOFA	SOFA	sequence	3	SO	transcript_region	five_prime_coding_exon_coding_region
SO:0000833	SO:0000147	SOFA	"A region of a transcript." [SO:ke]	SO:0000196	"The sequence of the five_prime_coding_exon that codes for protein." [SO:cjm]	2927699	SOFA	SOFA	sequence	4	SO	transcript_region	five_prime_coding_exon_coding_region
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000196	"The sequence of the five_prime_coding_exon that codes for protein." [SO:cjm]	4001104	SOFA	SOFA	sequence	5	SO	transcript	five_prime_coding_exon_coding_region
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000196	"The sequence of the five_prime_coding_exon that codes for protein." [SO:cjm]	4001105	SOFA	SOFA	sequence	5	SO	biological_region	five_prime_coding_exon_coding_region
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000196	"The sequence of the five_prime_coding_exon that codes for protein." [SO:cjm]	4385710	SOFA	SOFA	sequence	6	SO	gene_member_region	five_prime_coding_exon_coding_region
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000196	"The sequence of the five_prime_coding_exon that codes for protein." [SO:cjm]	6146606	SOFA	SOFA	sequence	8	SO	region	five_prime_coding_exon_coding_region
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000196	"The sequence of the five_prime_coding_exon that codes for protein." [SO:cjm]	5407375	SOFA	SOFA	sequence	7	SO	biological_region	five_prime_coding_exon_coding_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000196	"The sequence of the five_prime_coding_exon that codes for protein." [SO:cjm]	6469727	SOFA	SOFA	sequence	9	SO	sequence_feature	five_prime_coding_exon_coding_region
SO:0000197	\N	SOFA	"The sequence of the three_prime_coding_exon that codes for protein." [SO:cjm]	SO:0000197	"The sequence of the three_prime_coding_exon that codes for protein." [SO:cjm]	45166	\N	SOFA	sequence	0	SO	three_prime_coding_exon_coding_region	three_prime_coding_exon_coding_region
SO:0000202	SO:0000197	SOFA	"The coding exon that is most 3-prime on a given transcript." [SO:ma]	SO:0000197	"The sequence of the three_prime_coding_exon that codes for protein." [SO:cjm]	489762	SOFA	\N	sequence	1	SO	three_prime_coding_exon	three_prime_coding_exon_coding_region
SO:0001215	SO:0000197	SOFA	"The region of an exon that encodes for protein sequence." [SO:ke]	SO:0000197	"The sequence of the three_prime_coding_exon that codes for protein." [SO:cjm]	489763	SOFA	SOFA	sequence	1	SO	coding_region_of_exon	three_prime_coding_exon_coding_region
SO:0000195	SO:0000202	SOFA	"An exon whereby at least one base is part of a codon (here, 'codon' is inclusive of the stop_codon)." [SO:ke]	SO:0000197	"The sequence of the three_prime_coding_exon that codes for protein." [SO:cjm]	1072195	\N	SOFA	sequence	2	SO	coding_exon	three_prime_coding_exon_coding_region
SO:0000852	SO:0001215	SOFA	"A region of an exon." [RSC:cb]	SO:0000197	"The sequence of the three_prime_coding_exon that codes for protein." [SO:cjm]	1072196	SOFA	SOFA	sequence	2	SO	exon_region	three_prime_coding_exon_coding_region
SO:0000147	SO:0000195	SOFA	"A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing." [SO:ke]	SO:0000197	"The sequence of the three_prime_coding_exon that codes for protein." [SO:cjm]	1903222	SOFA	SOFA	sequence	3	SO	exon	three_prime_coding_exon_coding_region
SO:0000147	SO:0000852	SOFA	"A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing." [SO:ke]	SO:0000197	"The sequence of the three_prime_coding_exon that codes for protein." [SO:cjm]	1903223	SOFA	SOFA	sequence	3	SO	exon	three_prime_coding_exon_coding_region
SO:0000833	SO:0000852	SOFA	"A region of a transcript." [SO:ke]	SO:0000197	"The sequence of the three_prime_coding_exon that codes for protein." [SO:cjm]	1903224	SOFA	SOFA	sequence	3	SO	transcript_region	three_prime_coding_exon_coding_region
SO:0000833	SO:0000147	SOFA	"A region of a transcript." [SO:ke]	SO:0000197	"The sequence of the three_prime_coding_exon that codes for protein." [SO:cjm]	2927702	SOFA	SOFA	sequence	4	SO	transcript_region	three_prime_coding_exon_coding_region
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000197	"The sequence of the three_prime_coding_exon that codes for protein." [SO:cjm]	4001108	SOFA	SOFA	sequence	5	SO	transcript	three_prime_coding_exon_coding_region
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000197	"The sequence of the three_prime_coding_exon that codes for protein." [SO:cjm]	4001109	SOFA	SOFA	sequence	5	SO	biological_region	three_prime_coding_exon_coding_region
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000197	"The sequence of the three_prime_coding_exon that codes for protein." [SO:cjm]	4385712	SOFA	SOFA	sequence	6	SO	gene_member_region	three_prime_coding_exon_coding_region
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000197	"The sequence of the three_prime_coding_exon that codes for protein." [SO:cjm]	6146607	SOFA	SOFA	sequence	8	SO	region	three_prime_coding_exon_coding_region
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000197	"The sequence of the three_prime_coding_exon that codes for protein." [SO:cjm]	5407377	SOFA	SOFA	sequence	7	SO	biological_region	three_prime_coding_exon_coding_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000197	"The sequence of the three_prime_coding_exon that codes for protein." [SO:cjm]	6469728	SOFA	SOFA	sequence	9	SO	sequence_feature	three_prime_coding_exon_coding_region
SO:0000198	\N	SOFA	"An exon that does not contain any codons." [SO:ke]	SO:0000198	"An exon that does not contain any codons." [SO:ke]	45167	\N	SOFA	sequence	0	SO	noncoding_exon	noncoding_exon
SO:0000147	SO:0000198	SOFA	"A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing." [SO:ke]	SO:0000198	"An exon that does not contain any codons." [SO:ke]	489764	SOFA	SOFA	sequence	1	SO	exon	noncoding_exon
SO:0000833	SO:0000147	SOFA	"A region of a transcript." [SO:ke]	SO:0000198	"An exon that does not contain any codons." [SO:ke]	1072197	SOFA	SOFA	sequence	2	SO	transcript_region	noncoding_exon
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000198	"An exon that does not contain any codons." [SO:ke]	1903225	SOFA	SOFA	sequence	3	SO	transcript	noncoding_exon
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000198	"An exon that does not contain any codons." [SO:ke]	1903226	SOFA	SOFA	sequence	3	SO	biological_region	noncoding_exon
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000198	"An exon that does not contain any codons." [SO:ke]	2927705	SOFA	SOFA	sequence	4	SO	gene_member_region	noncoding_exon
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000198	"An exon that does not contain any codons." [SO:ke]	4965740	SOFA	SOFA	sequence	6	SO	region	noncoding_exon
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000198	"An exon that does not contain any codons." [SO:ke]	4001112	SOFA	SOFA	sequence	5	SO	biological_region	noncoding_exon
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000198	"An exon that does not contain any codons." [SO:ke]	5180664	SOFA	SOFA	sequence	7	SO	sequence_feature	noncoding_exon
SO:0000199	\N	DBVAR	"A region of nucleotide sequence that has translocated to a new position. The observed adjacency of two previously separated regions." [NCBI:th, SO:ke]	SO:0000199	"A region of nucleotide sequence that has translocated to a new position. The observed adjacency of two previously separated regions." [NCBI:th, SO:ke]	45168	\N	DBVAR	sequence	0	SO	translocation	translocation
SO:0001785	SO:0000199	DBVAR	"" []	SO:0000199	"A region of nucleotide sequence that has translocated to a new position. The observed adjacency of two previously separated regions." [NCBI:th, SO:ke]	489765	DBVAR	DBVAR	sequence	1	SO	structural_alteration	translocation
SO:0001059	SO:0001785	DBVAR	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0000199	"A region of nucleotide sequence that has translocated to a new position. The observed adjacency of two previously separated regions." [NCBI:th, SO:ke]	1072198	DBVAR	SOFA	sequence	2	SO	sequence_alteration	translocation
SO:0002072	SO:0001059	DBVAR	"" []	SO:0000199	"A region of nucleotide sequence that has translocated to a new position. The observed adjacency of two previously separated regions." [NCBI:th, SO:ke]	1903227	SOFA	\N	sequence	3	SO	sequence_comparison	translocation
SO:0000110	SO:0002072	DBVAR	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000199	"A region of nucleotide sequence that has translocated to a new position. The observed adjacency of two previously separated regions." [NCBI:th, SO:ke]	2927707	\N	SOFA	sequence	4	SO	sequence_feature	translocation
SO:0000200	\N	SOFA	"The 5' most coding exon." [SO:ke]	SO:0000200	"The 5' most coding exon." [SO:ke]	45169	\N	SOFA	sequence	0	SO	five_prime_coding_exon	five_prime_coding_exon
SO:0000195	SO:0000200	SOFA	"An exon whereby at least one base is part of a codon (here, 'codon' is inclusive of the stop_codon)." [SO:ke]	SO:0000200	"The 5' most coding exon." [SO:ke]	489766	SOFA	SOFA	sequence	1	SO	coding_exon	five_prime_coding_exon
SO:0000147	SO:0000195	SOFA	"A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing." [SO:ke]	SO:0000200	"The 5' most coding exon." [SO:ke]	1072199	SOFA	SOFA	sequence	2	SO	exon	five_prime_coding_exon
SO:0000833	SO:0000147	SOFA	"A region of a transcript." [SO:ke]	SO:0000200	"The 5' most coding exon." [SO:ke]	1903228	SOFA	SOFA	sequence	3	SO	transcript_region	five_prime_coding_exon
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000200	"The 5' most coding exon." [SO:ke]	2927708	SOFA	SOFA	sequence	4	SO	transcript	five_prime_coding_exon
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000200	"The 5' most coding exon." [SO:ke]	2927709	SOFA	SOFA	sequence	4	SO	biological_region	five_prime_coding_exon
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000200	"The 5' most coding exon." [SO:ke]	4001114	SOFA	SOFA	sequence	5	SO	gene_member_region	five_prime_coding_exon
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000200	"The 5' most coding exon." [SO:ke]	5740741	SOFA	SOFA	sequence	7	SO	region	five_prime_coding_exon
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000200	"The 5' most coding exon." [SO:ke]	4965741	SOFA	SOFA	sequence	6	SO	biological_region	five_prime_coding_exon
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000200	"The 5' most coding exon." [SO:ke]	5996367	SOFA	SOFA	sequence	8	SO	sequence_feature	five_prime_coding_exon
SO:0000201	\N	\N	"An exon that is bounded by 5' and 3' splice sites." [PMID:10373547]	SO:0000201	"An exon that is bounded by 5' and 3' splice sites." [PMID:10373547]	45170	\N	\N	sequence	0	SO	interior_exon	interior_exon
SO:0000147	SO:0000201	\N	"A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing." [SO:ke]	SO:0000201	"An exon that is bounded by 5' and 3' splice sites." [PMID:10373547]	489767	\N	SOFA	sequence	1	SO	exon	interior_exon
SO:0000833	SO:0000147	\N	"A region of a transcript." [SO:ke]	SO:0000201	"An exon that is bounded by 5' and 3' splice sites." [PMID:10373547]	1072200	SOFA	SOFA	sequence	2	SO	transcript_region	interior_exon
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000201	"An exon that is bounded by 5' and 3' splice sites." [PMID:10373547]	1903229	SOFA	SOFA	sequence	3	SO	transcript	interior_exon
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000201	"An exon that is bounded by 5' and 3' splice sites." [PMID:10373547]	1903230	SOFA	SOFA	sequence	3	SO	biological_region	interior_exon
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000201	"An exon that is bounded by 5' and 3' splice sites." [PMID:10373547]	2927710	SOFA	SOFA	sequence	4	SO	gene_member_region	interior_exon
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000201	"An exon that is bounded by 5' and 3' splice sites." [PMID:10373547]	4965743	SOFA	SOFA	sequence	6	SO	region	interior_exon
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000201	"An exon that is bounded by 5' and 3' splice sites." [PMID:10373547]	4001116	SOFA	SOFA	sequence	5	SO	biological_region	interior_exon
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000201	"An exon that is bounded by 5' and 3' splice sites." [PMID:10373547]	5180665	SOFA	SOFA	sequence	7	SO	sequence_feature	interior_exon
SO:0000202	\N	\N	"The coding exon that is most 3-prime on a given transcript." [SO:ma]	SO:0000202	"The coding exon that is most 3-prime on a given transcript." [SO:ma]	45171	\N	\N	sequence	0	SO	three_prime_coding_exon	three_prime_coding_exon
SO:0000195	SO:0000202	\N	"An exon whereby at least one base is part of a codon (here, 'codon' is inclusive of the stop_codon)." [SO:ke]	SO:0000202	"The coding exon that is most 3-prime on a given transcript." [SO:ma]	489768	\N	SOFA	sequence	1	SO	coding_exon	three_prime_coding_exon
SO:0000147	SO:0000195	\N	"A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing." [SO:ke]	SO:0000202	"The coding exon that is most 3-prime on a given transcript." [SO:ma]	1072201	SOFA	SOFA	sequence	2	SO	exon	three_prime_coding_exon
SO:0000833	SO:0000147	\N	"A region of a transcript." [SO:ke]	SO:0000202	"The coding exon that is most 3-prime on a given transcript." [SO:ma]	1903231	SOFA	SOFA	sequence	3	SO	transcript_region	three_prime_coding_exon
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000202	"The coding exon that is most 3-prime on a given transcript." [SO:ma]	2927712	SOFA	SOFA	sequence	4	SO	transcript	three_prime_coding_exon
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000202	"The coding exon that is most 3-prime on a given transcript." [SO:ma]	2927713	SOFA	SOFA	sequence	4	SO	biological_region	three_prime_coding_exon
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000202	"The coding exon that is most 3-prime on a given transcript." [SO:ma]	4001118	SOFA	SOFA	sequence	5	SO	gene_member_region	three_prime_coding_exon
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000202	"The coding exon that is most 3-prime on a given transcript." [SO:ma]	5740742	SOFA	SOFA	sequence	7	SO	region	three_prime_coding_exon
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000202	"The coding exon that is most 3-prime on a given transcript." [SO:ma]	4965744	SOFA	SOFA	sequence	6	SO	biological_region	three_prime_coding_exon
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000202	"The coding exon that is most 3-prime on a given transcript." [SO:ma]	5996368	SOFA	SOFA	sequence	8	SO	sequence_feature	three_prime_coding_exon
SO:0000203	\N	SOFA	"Messenger RNA sequences that are untranslated and lie five prime or three prime to sequences which are translated." [SO:ke]	SO:0000203	"Messenger RNA sequences that are untranslated and lie five prime or three prime to sequences which are translated." [SO:ke]	45172	\N	SOFA	sequence	0	SO	UTR	UTR
SO:0000836	SO:0000203	SOFA	"A region of an mRNA." [SO:cb]	SO:0000203	"Messenger RNA sequences that are untranslated and lie five prime or three prime to sequences which are translated." [SO:ke]	489769	SOFA	SOFA	sequence	1	SO	mRNA_region	UTR
SO:0000234	SO:0000836	SOFA	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000203	"Messenger RNA sequences that are untranslated and lie five prime or three prime to sequences which are translated." [SO:ke]	1072202	SOFA	SOFA	sequence	2	SO	mRNA	UTR
SO:0000834	SO:0000836	SOFA	"A region of a mature transcript." [SO:ke]	SO:0000203	"Messenger RNA sequences that are untranslated and lie five prime or three prime to sequences which are translated." [SO:ke]	1072203	SOFA	SOFA	sequence	2	SO	mature_transcript_region	UTR
SO:0000233	SO:0000234	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000203	"Messenger RNA sequences that are untranslated and lie five prime or three prime to sequences which are translated." [SO:ke]	1903232	SOFA	SOFA	sequence	3	SO	mature_transcript	UTR
SO:0000833	SO:0000834	SOFA	"A region of a transcript." [SO:ke]	SO:0000203	"Messenger RNA sequences that are untranslated and lie five prime or three prime to sequences which are translated." [SO:ke]	1903233	SOFA	SOFA	sequence	3	SO	transcript_region	UTR
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000203	"Messenger RNA sequences that are untranslated and lie five prime or three prime to sequences which are translated." [SO:ke]	2927714	SOFA	SOFA	sequence	4	SO	transcript	UTR
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000203	"Messenger RNA sequences that are untranslated and lie five prime or three prime to sequences which are translated." [SO:ke]	2927715	SOFA	SOFA	sequence	4	SO	transcript	UTR
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000203	"Messenger RNA sequences that are untranslated and lie five prime or three prime to sequences which are translated." [SO:ke]	2927716	SOFA	SOFA	sequence	4	SO	biological_region	UTR
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000203	"Messenger RNA sequences that are untranslated and lie five prime or three prime to sequences which are translated." [SO:ke]	4001120	SOFA	SOFA	sequence	5	SO	gene_member_region	UTR
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000203	"Messenger RNA sequences that are untranslated and lie five prime or three prime to sequences which are translated." [SO:ke]	5740743	SOFA	SOFA	sequence	7	SO	region	UTR
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000203	"Messenger RNA sequences that are untranslated and lie five prime or three prime to sequences which are translated." [SO:ke]	4965746	SOFA	SOFA	sequence	6	SO	biological_region	UTR
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000203	"Messenger RNA sequences that are untranslated and lie five prime or three prime to sequences which are translated." [SO:ke]	5996369	SOFA	SOFA	sequence	8	SO	sequence_feature	UTR
SO:0000204	\N	SOFA	"A region at the 5' end of a mature transcript (preceding the initiation codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000204	"A region at the 5' end of a mature transcript (preceding the initiation codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	45173	\N	SOFA	sequence	0	SO	five_prime_UTR	five_prime_UTR
SO:0000203	SO:0000204	SOFA	"Messenger RNA sequences that are untranslated and lie five prime or three prime to sequences which are translated." [SO:ke]	SO:0000204	"A region at the 5' end of a mature transcript (preceding the initiation codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	489770	SOFA	SOFA	sequence	1	SO	UTR	five_prime_UTR
SO:0000836	SO:0000203	SOFA	"A region of an mRNA." [SO:cb]	SO:0000204	"A region at the 5' end of a mature transcript (preceding the initiation codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072204	SOFA	SOFA	sequence	2	SO	mRNA_region	five_prime_UTR
SO:0000234	SO:0000836	SOFA	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000204	"A region at the 5' end of a mature transcript (preceding the initiation codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903234	SOFA	SOFA	sequence	3	SO	mRNA	five_prime_UTR
SO:0000834	SO:0000836	SOFA	"A region of a mature transcript." [SO:ke]	SO:0000204	"A region at the 5' end of a mature transcript (preceding the initiation codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903235	SOFA	SOFA	sequence	3	SO	mature_transcript_region	five_prime_UTR
SO:0000233	SO:0000234	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000204	"A region at the 5' end of a mature transcript (preceding the initiation codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2927717	SOFA	SOFA	sequence	4	SO	mature_transcript	five_prime_UTR
SO:0000833	SO:0000834	SOFA	"A region of a transcript." [SO:ke]	SO:0000204	"A region at the 5' end of a mature transcript (preceding the initiation codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2927718	SOFA	SOFA	sequence	4	SO	transcript_region	five_prime_UTR
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000204	"A region at the 5' end of a mature transcript (preceding the initiation codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4001122	SOFA	SOFA	sequence	5	SO	transcript	five_prime_UTR
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000204	"A region at the 5' end of a mature transcript (preceding the initiation codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4001123	SOFA	SOFA	sequence	5	SO	transcript	five_prime_UTR
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000204	"A region at the 5' end of a mature transcript (preceding the initiation codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4001124	SOFA	SOFA	sequence	5	SO	biological_region	five_prime_UTR
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000204	"A region at the 5' end of a mature transcript (preceding the initiation codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4965748	SOFA	SOFA	sequence	6	SO	gene_member_region	five_prime_UTR
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000204	"A region at the 5' end of a mature transcript (preceding the initiation codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	6310749	SOFA	SOFA	sequence	8	SO	region	five_prime_UTR
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000204	"A region at the 5' end of a mature transcript (preceding the initiation codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	5740744	SOFA	SOFA	sequence	7	SO	biological_region	five_prime_UTR
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000204	"A region at the 5' end of a mature transcript (preceding the initiation codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	6550237	SOFA	SOFA	sequence	9	SO	sequence_feature	five_prime_UTR
SO:0000205	\N	SOFA	"A region at the 3' end of a mature transcript (following the stop codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000205	"A region at the 3' end of a mature transcript (following the stop codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	45174	\N	SOFA	sequence	0	SO	three_prime_UTR	three_prime_UTR
SO:0000203	SO:0000205	SOFA	"Messenger RNA sequences that are untranslated and lie five prime or three prime to sequences which are translated." [SO:ke]	SO:0000205	"A region at the 3' end of a mature transcript (following the stop codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	489771	SOFA	SOFA	sequence	1	SO	UTR	three_prime_UTR
SO:0000836	SO:0000203	SOFA	"A region of an mRNA." [SO:cb]	SO:0000205	"A region at the 3' end of a mature transcript (following the stop codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072205	SOFA	SOFA	sequence	2	SO	mRNA_region	three_prime_UTR
SO:0000234	SO:0000836	SOFA	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000205	"A region at the 3' end of a mature transcript (following the stop codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903236	SOFA	SOFA	sequence	3	SO	mRNA	three_prime_UTR
SO:0000834	SO:0000836	SOFA	"A region of a mature transcript." [SO:ke]	SO:0000205	"A region at the 3' end of a mature transcript (following the stop codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903237	SOFA	SOFA	sequence	3	SO	mature_transcript_region	three_prime_UTR
SO:0000233	SO:0000234	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000205	"A region at the 3' end of a mature transcript (following the stop codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2927719	SOFA	SOFA	sequence	4	SO	mature_transcript	three_prime_UTR
SO:0000833	SO:0000834	SOFA	"A region of a transcript." [SO:ke]	SO:0000205	"A region at the 3' end of a mature transcript (following the stop codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2927720	SOFA	SOFA	sequence	4	SO	transcript_region	three_prime_UTR
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000205	"A region at the 3' end of a mature transcript (following the stop codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4001125	SOFA	SOFA	sequence	5	SO	transcript	three_prime_UTR
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000205	"A region at the 3' end of a mature transcript (following the stop codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4001126	SOFA	SOFA	sequence	5	SO	transcript	three_prime_UTR
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000205	"A region at the 3' end of a mature transcript (following the stop codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4001127	SOFA	SOFA	sequence	5	SO	biological_region	three_prime_UTR
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000205	"A region at the 3' end of a mature transcript (following the stop codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4965750	SOFA	SOFA	sequence	6	SO	gene_member_region	three_prime_UTR
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000205	"A region at the 3' end of a mature transcript (following the stop codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	6310750	SOFA	SOFA	sequence	8	SO	region	three_prime_UTR
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000205	"A region at the 3' end of a mature transcript (following the stop codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	5740746	SOFA	SOFA	sequence	7	SO	biological_region	three_prime_UTR
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000205	"A region at the 3' end of a mature transcript (following the stop codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	6550238	SOFA	SOFA	sequence	9	SO	sequence_feature	three_prime_UTR
SO:0000206	\N	\N	"A repetitive element, a few hundred base pairs long, that is dispersed throughout the genome. A common human SINE is the Alu element." [SO:ke]	SO:0000206	"A repetitive element, a few hundred base pairs long, that is dispersed throughout the genome. A common human SINE is the Alu element." [SO:ke]	45175	\N	\N	sequence	0	SO	SINE_element	SINE_element
SO:0000189	SO:0000206	\N	"A retrotransposon without long terminal repeat sequences." [SO:ke]	SO:0000206	"A repetitive element, a few hundred base pairs long, that is dispersed throughout the genome. A common human SINE is the Alu element." [SO:ke]	489772	\N	\N	sequence	1	SO	non_LTR_retrotransposon	SINE_element
SO:0000180	SO:0000189	\N	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	SO:0000206	"A repetitive element, a few hundred base pairs long, that is dispersed throughout the genome. A common human SINE is the Alu element." [SO:ke]	1072206	\N	\N	sequence	2	SO	retrotransposon	SINE_element
SO:0000101	SO:0000180	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000206	"A repetitive element, a few hundred base pairs long, that is dispersed throughout the genome. A common human SINE is the Alu element." [SO:ke]	1903238	\N	SOFA	sequence	3	SO	transposable_element	SINE_element
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000206	"A repetitive element, a few hundred base pairs long, that is dispersed throughout the genome. A common human SINE is the Alu element." [SO:ke]	2927721	SOFA	SOFA	sequence	4	SO	integrated_mobile_genetic_element	SINE_element
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000206	"A repetitive element, a few hundred base pairs long, that is dispersed throughout the genome. A common human SINE is the Alu element." [SO:ke]	4001128	SOFA	SOFA	sequence	5	SO	mobile_genetic_element	SINE_element
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000206	"A repetitive element, a few hundred base pairs long, that is dispersed throughout the genome. A common human SINE is the Alu element." [SO:ke]	4965752	SOFA	SOFA	sequence	6	SO	biological_region	SINE_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000206	"A repetitive element, a few hundred base pairs long, that is dispersed throughout the genome. A common human SINE is the Alu element." [SO:ke]	5740748	SOFA	SOFA	sequence	7	SO	region	SINE_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000206	"A repetitive element, a few hundred base pairs long, that is dispersed throughout the genome. A common human SINE is the Alu element." [SO:ke]	6310751	SOFA	SOFA	sequence	8	SO	sequence_feature	SINE_element
SO:0000207	\N	\N	"SSLP are a kind of sequence alteration where the number of repeated sequences in intergenic regions may differ." [SO:ke]	SO:0000207	"SSLP are a kind of sequence alteration where the number of repeated sequences in intergenic regions may differ." [SO:ke]	45176	\N	\N	sequence	0	SO	simple_sequence_length_variation	simple_sequence_length_variation
SO:0000248	SO:0000207	\N	"A kind of kind of sequence alteration where the copies of a region present varies across a population." [SO:ke]	SO:0000207	"SSLP are a kind of sequence alteration where the number of repeated sequences in intergenic regions may differ." [SO:ke]	489773	\N	\N	sequence	1	SO	sequence_length_alteration	simple_sequence_length_variation
SO:0001059	SO:0000248	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0000207	"SSLP are a kind of sequence alteration where the number of repeated sequences in intergenic regions may differ." [SO:ke]	1072207	\N	SOFA	sequence	2	SO	sequence_alteration	simple_sequence_length_variation
SO:0002072	SO:0001059	\N	"" []	SO:0000207	"SSLP are a kind of sequence alteration where the number of repeated sequences in intergenic regions may differ." [SO:ke]	1903239	SOFA	\N	sequence	3	SO	sequence_comparison	simple_sequence_length_variation
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000207	"SSLP are a kind of sequence alteration where the number of repeated sequences in intergenic regions may differ." [SO:ke]	2927722	\N	SOFA	sequence	4	SO	sequence_feature	simple_sequence_length_variation
SO:0000208	\N	\N	"A DNA transposable element defined as having termini with perfect, or nearly perfect short inverted repeats, generally 10 - 40 nucleotides long." [http://www.genetics.org/cgi/reprint/156/4/1983.pdf]	SO:0000208	"A DNA transposable element defined as having termini with perfect, or nearly perfect short inverted repeats, generally 10 - 40 nucleotides long." [http://www.genetics.org/cgi/reprint/156/4/1983.pdf]	45177	\N	\N	sequence	0	SO	terminal_inverted_repeat_element	terminal_inverted_repeat_element
SO:0000182	SO:0000208	\N	"A transposon where the mechanism of transposition is via a DNA intermediate." [SO:ke]	SO:0000208	"A DNA transposable element defined as having termini with perfect, or nearly perfect short inverted repeats, generally 10 - 40 nucleotides long." [http://www.genetics.org/cgi/reprint/156/4/1983.pdf]	489774	\N	\N	sequence	1	SO	DNA_transposon	terminal_inverted_repeat_element
SO:0000101	SO:0000182	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000208	"A DNA transposable element defined as having termini with perfect, or nearly perfect short inverted repeats, generally 10 - 40 nucleotides long." [http://www.genetics.org/cgi/reprint/156/4/1983.pdf]	1072208	\N	SOFA	sequence	2	SO	transposable_element	terminal_inverted_repeat_element
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000208	"A DNA transposable element defined as having termini with perfect, or nearly perfect short inverted repeats, generally 10 - 40 nucleotides long." [http://www.genetics.org/cgi/reprint/156/4/1983.pdf]	1903240	SOFA	SOFA	sequence	3	SO	integrated_mobile_genetic_element	terminal_inverted_repeat_element
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000208	"A DNA transposable element defined as having termini with perfect, or nearly perfect short inverted repeats, generally 10 - 40 nucleotides long." [http://www.genetics.org/cgi/reprint/156/4/1983.pdf]	2927723	SOFA	SOFA	sequence	4	SO	mobile_genetic_element	terminal_inverted_repeat_element
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000208	"A DNA transposable element defined as having termini with perfect, or nearly perfect short inverted repeats, generally 10 - 40 nucleotides long." [http://www.genetics.org/cgi/reprint/156/4/1983.pdf]	4001129	SOFA	SOFA	sequence	5	SO	biological_region	terminal_inverted_repeat_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000208	"A DNA transposable element defined as having termini with perfect, or nearly perfect short inverted repeats, generally 10 - 40 nucleotides long." [http://www.genetics.org/cgi/reprint/156/4/1983.pdf]	4965753	SOFA	SOFA	sequence	6	SO	region	terminal_inverted_repeat_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000208	"A DNA transposable element defined as having termini with perfect, or nearly perfect short inverted repeats, generally 10 - 40 nucleotides long." [http://www.genetics.org/cgi/reprint/156/4/1983.pdf]	5740749	SOFA	SOFA	sequence	7	SO	sequence_feature	terminal_inverted_repeat_element
SO:0000209	\N	SOFA	"A primary transcript encoding a ribosomal RNA." [SO:ke]	SO:0000209	"A primary transcript encoding a ribosomal RNA." [SO:ke]	45178	\N	SOFA	sequence	0	SO	rRNA_primary_transcript	rRNA_primary_transcript
SO:0000483	SO:0000209	SOFA	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000209	"A primary transcript encoding a ribosomal RNA." [SO:ke]	489775	SOFA	SOFA	sequence	1	SO	nc_primary_transcript	rRNA_primary_transcript
SO:0000185	SO:0000483	SOFA	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000209	"A primary transcript encoding a ribosomal RNA." [SO:ke]	1072209	SOFA	SOFA	sequence	2	SO	primary_transcript	rRNA_primary_transcript
SO:0000673	SO:0000185	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000209	"A primary transcript encoding a ribosomal RNA." [SO:ke]	1903241	SOFA	SOFA	sequence	3	SO	transcript	rRNA_primary_transcript
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000209	"A primary transcript encoding a ribosomal RNA." [SO:ke]	2927724	SOFA	SOFA	sequence	4	SO	gene_member_region	rRNA_primary_transcript
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000209	"A primary transcript encoding a ribosomal RNA." [SO:ke]	4001130	SOFA	SOFA	sequence	5	SO	biological_region	rRNA_primary_transcript
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000209	"A primary transcript encoding a ribosomal RNA." [SO:ke]	4965754	SOFA	SOFA	sequence	6	SO	region	rRNA_primary_transcript
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000209	"A primary transcript encoding a ribosomal RNA." [SO:ke]	5740750	SOFA	SOFA	sequence	7	SO	sequence_feature	rRNA_primary_transcript
SO:0000210	\N	\N	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	SO:0000210	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	45179	\N	\N	sequence	0	SO	tRNA_primary_transcript	tRNA_primary_transcript
SO:0000483	SO:0000210	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000210	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	489776	\N	SOFA	sequence	1	SO	nc_primary_transcript	tRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000210	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	1072210	SOFA	SOFA	sequence	2	SO	primary_transcript	tRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000210	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	1903242	SOFA	SOFA	sequence	3	SO	transcript	tRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000210	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	2927725	SOFA	SOFA	sequence	4	SO	gene_member_region	tRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000210	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	4001131	SOFA	SOFA	sequence	5	SO	biological_region	tRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000210	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	4965755	SOFA	SOFA	sequence	6	SO	region	tRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000210	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	5740751	SOFA	SOFA	sequence	7	SO	sequence_feature	tRNA_primary_transcript
SO:0000211	\N	\N	"A primary transcript encoding alanyl tRNA." [SO:ke]	SO:0000211	"A primary transcript encoding alanyl tRNA." [SO:ke]	45180	\N	\N	sequence	0	SO	alanine_tRNA_primary_transcript	alanine_tRNA_primary_transcript
SO:0000210	SO:0000211	\N	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	SO:0000211	"A primary transcript encoding alanyl tRNA." [SO:ke]	489777	\N	\N	sequence	1	SO	tRNA_primary_transcript	alanine_tRNA_primary_transcript
SO:0000483	SO:0000210	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000211	"A primary transcript encoding alanyl tRNA." [SO:ke]	1072211	\N	SOFA	sequence	2	SO	nc_primary_transcript	alanine_tRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000211	"A primary transcript encoding alanyl tRNA." [SO:ke]	1903243	SOFA	SOFA	sequence	3	SO	primary_transcript	alanine_tRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000211	"A primary transcript encoding alanyl tRNA." [SO:ke]	2927726	SOFA	SOFA	sequence	4	SO	transcript	alanine_tRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000211	"A primary transcript encoding alanyl tRNA." [SO:ke]	4001132	SOFA	SOFA	sequence	5	SO	gene_member_region	alanine_tRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000211	"A primary transcript encoding alanyl tRNA." [SO:ke]	4965756	SOFA	SOFA	sequence	6	SO	biological_region	alanine_tRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000211	"A primary transcript encoding alanyl tRNA." [SO:ke]	5740752	SOFA	SOFA	sequence	7	SO	region	alanine_tRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000211	"A primary transcript encoding alanyl tRNA." [SO:ke]	6310752	SOFA	SOFA	sequence	8	SO	sequence_feature	alanine_tRNA_primary_transcript
SO:0000212	\N	\N	"A primary transcript encoding arginyl tRNA (SO:0000255)." [SO:ke]	SO:0000212	"A primary transcript encoding arginyl tRNA (SO:0000255)." [SO:ke]	45181	\N	\N	sequence	0	SO	arginine_tRNA_primary_transcript	arginine_tRNA_primary_transcript
SO:0000210	SO:0000212	\N	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	SO:0000212	"A primary transcript encoding arginyl tRNA (SO:0000255)." [SO:ke]	489778	\N	\N	sequence	1	SO	tRNA_primary_transcript	arginine_tRNA_primary_transcript
SO:0000483	SO:0000210	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000212	"A primary transcript encoding arginyl tRNA (SO:0000255)." [SO:ke]	1072212	\N	SOFA	sequence	2	SO	nc_primary_transcript	arginine_tRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000212	"A primary transcript encoding arginyl tRNA (SO:0000255)." [SO:ke]	1903244	SOFA	SOFA	sequence	3	SO	primary_transcript	arginine_tRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000212	"A primary transcript encoding arginyl tRNA (SO:0000255)." [SO:ke]	2927727	SOFA	SOFA	sequence	4	SO	transcript	arginine_tRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000212	"A primary transcript encoding arginyl tRNA (SO:0000255)." [SO:ke]	4001133	SOFA	SOFA	sequence	5	SO	gene_member_region	arginine_tRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000212	"A primary transcript encoding arginyl tRNA (SO:0000255)." [SO:ke]	4965757	SOFA	SOFA	sequence	6	SO	biological_region	arginine_tRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000212	"A primary transcript encoding arginyl tRNA (SO:0000255)." [SO:ke]	5740753	SOFA	SOFA	sequence	7	SO	region	arginine_tRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000212	"A primary transcript encoding arginyl tRNA (SO:0000255)." [SO:ke]	6310753	SOFA	SOFA	sequence	8	SO	sequence_feature	arginine_tRNA_primary_transcript
SO:0000213	\N	\N	"A primary transcript encoding asparaginyl tRNA (SO:0000256)." [SO:ke]	SO:0000213	"A primary transcript encoding asparaginyl tRNA (SO:0000256)." [SO:ke]	45182	\N	\N	sequence	0	SO	asparagine_tRNA_primary_transcript	asparagine_tRNA_primary_transcript
SO:0000210	SO:0000213	\N	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	SO:0000213	"A primary transcript encoding asparaginyl tRNA (SO:0000256)." [SO:ke]	489779	\N	\N	sequence	1	SO	tRNA_primary_transcript	asparagine_tRNA_primary_transcript
SO:0000483	SO:0000210	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000213	"A primary transcript encoding asparaginyl tRNA (SO:0000256)." [SO:ke]	1072213	\N	SOFA	sequence	2	SO	nc_primary_transcript	asparagine_tRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000213	"A primary transcript encoding asparaginyl tRNA (SO:0000256)." [SO:ke]	1903245	SOFA	SOFA	sequence	3	SO	primary_transcript	asparagine_tRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000213	"A primary transcript encoding asparaginyl tRNA (SO:0000256)." [SO:ke]	2927728	SOFA	SOFA	sequence	4	SO	transcript	asparagine_tRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000213	"A primary transcript encoding asparaginyl tRNA (SO:0000256)." [SO:ke]	4001134	SOFA	SOFA	sequence	5	SO	gene_member_region	asparagine_tRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000213	"A primary transcript encoding asparaginyl tRNA (SO:0000256)." [SO:ke]	4965758	SOFA	SOFA	sequence	6	SO	biological_region	asparagine_tRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000213	"A primary transcript encoding asparaginyl tRNA (SO:0000256)." [SO:ke]	5740754	SOFA	SOFA	sequence	7	SO	region	asparagine_tRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000213	"A primary transcript encoding asparaginyl tRNA (SO:0000256)." [SO:ke]	6310754	SOFA	SOFA	sequence	8	SO	sequence_feature	asparagine_tRNA_primary_transcript
SO:0000214	\N	\N	"A primary transcript encoding aspartyl tRNA (SO:0000257)." [SO:ke]	SO:0000214	"A primary transcript encoding aspartyl tRNA (SO:0000257)." [SO:ke]	45183	\N	\N	sequence	0	SO	aspartic_acid_tRNA_primary_transcript	aspartic_acid_tRNA_primary_transcript
SO:0000210	SO:0000214	\N	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	SO:0000214	"A primary transcript encoding aspartyl tRNA (SO:0000257)." [SO:ke]	489780	\N	\N	sequence	1	SO	tRNA_primary_transcript	aspartic_acid_tRNA_primary_transcript
SO:0000483	SO:0000210	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000214	"A primary transcript encoding aspartyl tRNA (SO:0000257)." [SO:ke]	1072214	\N	SOFA	sequence	2	SO	nc_primary_transcript	aspartic_acid_tRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000214	"A primary transcript encoding aspartyl tRNA (SO:0000257)." [SO:ke]	1903246	SOFA	SOFA	sequence	3	SO	primary_transcript	aspartic_acid_tRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000214	"A primary transcript encoding aspartyl tRNA (SO:0000257)." [SO:ke]	2927729	SOFA	SOFA	sequence	4	SO	transcript	aspartic_acid_tRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000214	"A primary transcript encoding aspartyl tRNA (SO:0000257)." [SO:ke]	4001135	SOFA	SOFA	sequence	5	SO	gene_member_region	aspartic_acid_tRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000214	"A primary transcript encoding aspartyl tRNA (SO:0000257)." [SO:ke]	4965759	SOFA	SOFA	sequence	6	SO	biological_region	aspartic_acid_tRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000214	"A primary transcript encoding aspartyl tRNA (SO:0000257)." [SO:ke]	5740755	SOFA	SOFA	sequence	7	SO	region	aspartic_acid_tRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000214	"A primary transcript encoding aspartyl tRNA (SO:0000257)." [SO:ke]	6310755	SOFA	SOFA	sequence	8	SO	sequence_feature	aspartic_acid_tRNA_primary_transcript
SO:0000215	\N	\N	"A primary transcript encoding cysteinyl tRNA (SO:0000258)." [SO:ke]	SO:0000215	"A primary transcript encoding cysteinyl tRNA (SO:0000258)." [SO:ke]	45184	\N	\N	sequence	0	SO	cysteine_tRNA_primary_transcript	cysteine_tRNA_primary_transcript
SO:0000210	SO:0000215	\N	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	SO:0000215	"A primary transcript encoding cysteinyl tRNA (SO:0000258)." [SO:ke]	489781	\N	\N	sequence	1	SO	tRNA_primary_transcript	cysteine_tRNA_primary_transcript
SO:0000483	SO:0000210	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000215	"A primary transcript encoding cysteinyl tRNA (SO:0000258)." [SO:ke]	1072215	\N	SOFA	sequence	2	SO	nc_primary_transcript	cysteine_tRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000215	"A primary transcript encoding cysteinyl tRNA (SO:0000258)." [SO:ke]	1903247	SOFA	SOFA	sequence	3	SO	primary_transcript	cysteine_tRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000215	"A primary transcript encoding cysteinyl tRNA (SO:0000258)." [SO:ke]	2927730	SOFA	SOFA	sequence	4	SO	transcript	cysteine_tRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000215	"A primary transcript encoding cysteinyl tRNA (SO:0000258)." [SO:ke]	4001136	SOFA	SOFA	sequence	5	SO	gene_member_region	cysteine_tRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000215	"A primary transcript encoding cysteinyl tRNA (SO:0000258)." [SO:ke]	4965760	SOFA	SOFA	sequence	6	SO	biological_region	cysteine_tRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000215	"A primary transcript encoding cysteinyl tRNA (SO:0000258)." [SO:ke]	5740756	SOFA	SOFA	sequence	7	SO	region	cysteine_tRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000215	"A primary transcript encoding cysteinyl tRNA (SO:0000258)." [SO:ke]	6310756	SOFA	SOFA	sequence	8	SO	sequence_feature	cysteine_tRNA_primary_transcript
SO:0000216	\N	\N	"A primary transcript encoding glutaminyl tRNA (SO:0000260)." [SO:ke]	SO:0000216	"A primary transcript encoding glutaminyl tRNA (SO:0000260)." [SO:ke]	45185	\N	\N	sequence	0	SO	glutamic_acid_tRNA_primary_transcript	glutamic_acid_tRNA_primary_transcript
SO:0000210	SO:0000216	\N	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	SO:0000216	"A primary transcript encoding glutaminyl tRNA (SO:0000260)." [SO:ke]	489782	\N	\N	sequence	1	SO	tRNA_primary_transcript	glutamic_acid_tRNA_primary_transcript
SO:0000483	SO:0000210	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000216	"A primary transcript encoding glutaminyl tRNA (SO:0000260)." [SO:ke]	1072216	\N	SOFA	sequence	2	SO	nc_primary_transcript	glutamic_acid_tRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000216	"A primary transcript encoding glutaminyl tRNA (SO:0000260)." [SO:ke]	1903248	SOFA	SOFA	sequence	3	SO	primary_transcript	glutamic_acid_tRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000216	"A primary transcript encoding glutaminyl tRNA (SO:0000260)." [SO:ke]	2927731	SOFA	SOFA	sequence	4	SO	transcript	glutamic_acid_tRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000216	"A primary transcript encoding glutaminyl tRNA (SO:0000260)." [SO:ke]	4001137	SOFA	SOFA	sequence	5	SO	gene_member_region	glutamic_acid_tRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000216	"A primary transcript encoding glutaminyl tRNA (SO:0000260)." [SO:ke]	4965761	SOFA	SOFA	sequence	6	SO	biological_region	glutamic_acid_tRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000216	"A primary transcript encoding glutaminyl tRNA (SO:0000260)." [SO:ke]	5740757	SOFA	SOFA	sequence	7	SO	region	glutamic_acid_tRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000216	"A primary transcript encoding glutaminyl tRNA (SO:0000260)." [SO:ke]	6310757	SOFA	SOFA	sequence	8	SO	sequence_feature	glutamic_acid_tRNA_primary_transcript
SO:0000217	\N	\N	"A primary transcript encoding glutamyl tRNA (SO:0000260)." [SO:ke]	SO:0000217	"A primary transcript encoding glutamyl tRNA (SO:0000260)." [SO:ke]	45186	\N	\N	sequence	0	SO	glutamine_tRNA_primary_transcript	glutamine_tRNA_primary_transcript
SO:0000210	SO:0000217	\N	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	SO:0000217	"A primary transcript encoding glutamyl tRNA (SO:0000260)." [SO:ke]	489783	\N	\N	sequence	1	SO	tRNA_primary_transcript	glutamine_tRNA_primary_transcript
SO:0000483	SO:0000210	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000217	"A primary transcript encoding glutamyl tRNA (SO:0000260)." [SO:ke]	1072217	\N	SOFA	sequence	2	SO	nc_primary_transcript	glutamine_tRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000217	"A primary transcript encoding glutamyl tRNA (SO:0000260)." [SO:ke]	1903249	SOFA	SOFA	sequence	3	SO	primary_transcript	glutamine_tRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000217	"A primary transcript encoding glutamyl tRNA (SO:0000260)." [SO:ke]	2927732	SOFA	SOFA	sequence	4	SO	transcript	glutamine_tRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000217	"A primary transcript encoding glutamyl tRNA (SO:0000260)." [SO:ke]	4001138	SOFA	SOFA	sequence	5	SO	gene_member_region	glutamine_tRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000217	"A primary transcript encoding glutamyl tRNA (SO:0000260)." [SO:ke]	4965762	SOFA	SOFA	sequence	6	SO	biological_region	glutamine_tRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000217	"A primary transcript encoding glutamyl tRNA (SO:0000260)." [SO:ke]	5740758	SOFA	SOFA	sequence	7	SO	region	glutamine_tRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000217	"A primary transcript encoding glutamyl tRNA (SO:0000260)." [SO:ke]	6310758	SOFA	SOFA	sequence	8	SO	sequence_feature	glutamine_tRNA_primary_transcript
SO:0000218	\N	\N	"A primary transcript encoding glycyl tRNA (SO:0000263)." [SO:ke]	SO:0000218	"A primary transcript encoding glycyl tRNA (SO:0000263)." [SO:ke]	45187	\N	\N	sequence	0	SO	glycine_tRNA_primary_transcript	glycine_tRNA_primary_transcript
SO:0000210	SO:0000218	\N	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	SO:0000218	"A primary transcript encoding glycyl tRNA (SO:0000263)." [SO:ke]	489784	\N	\N	sequence	1	SO	tRNA_primary_transcript	glycine_tRNA_primary_transcript
SO:0000483	SO:0000210	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000218	"A primary transcript encoding glycyl tRNA (SO:0000263)." [SO:ke]	1072218	\N	SOFA	sequence	2	SO	nc_primary_transcript	glycine_tRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000218	"A primary transcript encoding glycyl tRNA (SO:0000263)." [SO:ke]	1903250	SOFA	SOFA	sequence	3	SO	primary_transcript	glycine_tRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000218	"A primary transcript encoding glycyl tRNA (SO:0000263)." [SO:ke]	2927733	SOFA	SOFA	sequence	4	SO	transcript	glycine_tRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000218	"A primary transcript encoding glycyl tRNA (SO:0000263)." [SO:ke]	4001139	SOFA	SOFA	sequence	5	SO	gene_member_region	glycine_tRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000218	"A primary transcript encoding glycyl tRNA (SO:0000263)." [SO:ke]	4965763	SOFA	SOFA	sequence	6	SO	biological_region	glycine_tRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000218	"A primary transcript encoding glycyl tRNA (SO:0000263)." [SO:ke]	5740759	SOFA	SOFA	sequence	7	SO	region	glycine_tRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000218	"A primary transcript encoding glycyl tRNA (SO:0000263)." [SO:ke]	6310759	SOFA	SOFA	sequence	8	SO	sequence_feature	glycine_tRNA_primary_transcript
SO:0000219	\N	\N	"A primary transcript encoding histidyl tRNA (SO:0000262)." [SO:ke]	SO:0000219	"A primary transcript encoding histidyl tRNA (SO:0000262)." [SO:ke]	45188	\N	\N	sequence	0	SO	histidine_tRNA_primary_transcript	histidine_tRNA_primary_transcript
SO:0000210	SO:0000219	\N	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	SO:0000219	"A primary transcript encoding histidyl tRNA (SO:0000262)." [SO:ke]	489785	\N	\N	sequence	1	SO	tRNA_primary_transcript	histidine_tRNA_primary_transcript
SO:0000483	SO:0000210	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000219	"A primary transcript encoding histidyl tRNA (SO:0000262)." [SO:ke]	1072219	\N	SOFA	sequence	2	SO	nc_primary_transcript	histidine_tRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000219	"A primary transcript encoding histidyl tRNA (SO:0000262)." [SO:ke]	1903251	SOFA	SOFA	sequence	3	SO	primary_transcript	histidine_tRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000219	"A primary transcript encoding histidyl tRNA (SO:0000262)." [SO:ke]	2927734	SOFA	SOFA	sequence	4	SO	transcript	histidine_tRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000219	"A primary transcript encoding histidyl tRNA (SO:0000262)." [SO:ke]	4001140	SOFA	SOFA	sequence	5	SO	gene_member_region	histidine_tRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000219	"A primary transcript encoding histidyl tRNA (SO:0000262)." [SO:ke]	4965764	SOFA	SOFA	sequence	6	SO	biological_region	histidine_tRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000219	"A primary transcript encoding histidyl tRNA (SO:0000262)." [SO:ke]	5740760	SOFA	SOFA	sequence	7	SO	region	histidine_tRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000219	"A primary transcript encoding histidyl tRNA (SO:0000262)." [SO:ke]	6310760	SOFA	SOFA	sequence	8	SO	sequence_feature	histidine_tRNA_primary_transcript
SO:0000220	\N	\N	"A primary transcript encoding isoleucyl tRNA (SO:0000263)." [SO:ke]	SO:0000220	"A primary transcript encoding isoleucyl tRNA (SO:0000263)." [SO:ke]	45189	\N	\N	sequence	0	SO	isoleucine_tRNA_primary_transcript	isoleucine_tRNA_primary_transcript
SO:0000210	SO:0000220	\N	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	SO:0000220	"A primary transcript encoding isoleucyl tRNA (SO:0000263)." [SO:ke]	489786	\N	\N	sequence	1	SO	tRNA_primary_transcript	isoleucine_tRNA_primary_transcript
SO:0000483	SO:0000210	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000220	"A primary transcript encoding isoleucyl tRNA (SO:0000263)." [SO:ke]	1072220	\N	SOFA	sequence	2	SO	nc_primary_transcript	isoleucine_tRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000220	"A primary transcript encoding isoleucyl tRNA (SO:0000263)." [SO:ke]	1903252	SOFA	SOFA	sequence	3	SO	primary_transcript	isoleucine_tRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000220	"A primary transcript encoding isoleucyl tRNA (SO:0000263)." [SO:ke]	2927735	SOFA	SOFA	sequence	4	SO	transcript	isoleucine_tRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000220	"A primary transcript encoding isoleucyl tRNA (SO:0000263)." [SO:ke]	4001141	SOFA	SOFA	sequence	5	SO	gene_member_region	isoleucine_tRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000220	"A primary transcript encoding isoleucyl tRNA (SO:0000263)." [SO:ke]	4965765	SOFA	SOFA	sequence	6	SO	biological_region	isoleucine_tRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000220	"A primary transcript encoding isoleucyl tRNA (SO:0000263)." [SO:ke]	5740761	SOFA	SOFA	sequence	7	SO	region	isoleucine_tRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000220	"A primary transcript encoding isoleucyl tRNA (SO:0000263)." [SO:ke]	6310761	SOFA	SOFA	sequence	8	SO	sequence_feature	isoleucine_tRNA_primary_transcript
SO:0000221	\N	\N	"A primary transcript encoding leucyl tRNA (SO:0000264)." [SO:ke]	SO:0000221	"A primary transcript encoding leucyl tRNA (SO:0000264)." [SO:ke]	45190	\N	\N	sequence	0	SO	leucine_tRNA_primary_transcript	leucine_tRNA_primary_transcript
SO:0000210	SO:0000221	\N	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	SO:0000221	"A primary transcript encoding leucyl tRNA (SO:0000264)." [SO:ke]	489787	\N	\N	sequence	1	SO	tRNA_primary_transcript	leucine_tRNA_primary_transcript
SO:0000483	SO:0000210	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000221	"A primary transcript encoding leucyl tRNA (SO:0000264)." [SO:ke]	1072221	\N	SOFA	sequence	2	SO	nc_primary_transcript	leucine_tRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000221	"A primary transcript encoding leucyl tRNA (SO:0000264)." [SO:ke]	1903253	SOFA	SOFA	sequence	3	SO	primary_transcript	leucine_tRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000221	"A primary transcript encoding leucyl tRNA (SO:0000264)." [SO:ke]	2927736	SOFA	SOFA	sequence	4	SO	transcript	leucine_tRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000221	"A primary transcript encoding leucyl tRNA (SO:0000264)." [SO:ke]	4001142	SOFA	SOFA	sequence	5	SO	gene_member_region	leucine_tRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000221	"A primary transcript encoding leucyl tRNA (SO:0000264)." [SO:ke]	4965766	SOFA	SOFA	sequence	6	SO	biological_region	leucine_tRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000221	"A primary transcript encoding leucyl tRNA (SO:0000264)." [SO:ke]	5740762	SOFA	SOFA	sequence	7	SO	region	leucine_tRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000221	"A primary transcript encoding leucyl tRNA (SO:0000264)." [SO:ke]	6310762	SOFA	SOFA	sequence	8	SO	sequence_feature	leucine_tRNA_primary_transcript
SO:0000222	\N	\N	"A primary transcript encoding lysyl tRNA (SO:0000265)." [SO:ke]	SO:0000222	"A primary transcript encoding lysyl tRNA (SO:0000265)." [SO:ke]	45191	\N	\N	sequence	0	SO	lysine_tRNA_primary_transcript	lysine_tRNA_primary_transcript
SO:0000210	SO:0000222	\N	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	SO:0000222	"A primary transcript encoding lysyl tRNA (SO:0000265)." [SO:ke]	489788	\N	\N	sequence	1	SO	tRNA_primary_transcript	lysine_tRNA_primary_transcript
SO:0000483	SO:0000210	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000222	"A primary transcript encoding lysyl tRNA (SO:0000265)." [SO:ke]	1072222	\N	SOFA	sequence	2	SO	nc_primary_transcript	lysine_tRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000222	"A primary transcript encoding lysyl tRNA (SO:0000265)." [SO:ke]	1903254	SOFA	SOFA	sequence	3	SO	primary_transcript	lysine_tRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000222	"A primary transcript encoding lysyl tRNA (SO:0000265)." [SO:ke]	2927737	SOFA	SOFA	sequence	4	SO	transcript	lysine_tRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000222	"A primary transcript encoding lysyl tRNA (SO:0000265)." [SO:ke]	4001143	SOFA	SOFA	sequence	5	SO	gene_member_region	lysine_tRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000222	"A primary transcript encoding lysyl tRNA (SO:0000265)." [SO:ke]	4965767	SOFA	SOFA	sequence	6	SO	biological_region	lysine_tRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000222	"A primary transcript encoding lysyl tRNA (SO:0000265)." [SO:ke]	5740763	SOFA	SOFA	sequence	7	SO	region	lysine_tRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000222	"A primary transcript encoding lysyl tRNA (SO:0000265)." [SO:ke]	6310763	SOFA	SOFA	sequence	8	SO	sequence_feature	lysine_tRNA_primary_transcript
SO:0000223	\N	\N	"A primary transcript encoding methionyl tRNA (SO:0000266)." [SO:ke]	SO:0000223	"A primary transcript encoding methionyl tRNA (SO:0000266)." [SO:ke]	45192	\N	\N	sequence	0	SO	methionine_tRNA_primary_transcript	methionine_tRNA_primary_transcript
SO:0000210	SO:0000223	\N	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	SO:0000223	"A primary transcript encoding methionyl tRNA (SO:0000266)." [SO:ke]	489789	\N	\N	sequence	1	SO	tRNA_primary_transcript	methionine_tRNA_primary_transcript
SO:0000483	SO:0000210	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000223	"A primary transcript encoding methionyl tRNA (SO:0000266)." [SO:ke]	1072223	\N	SOFA	sequence	2	SO	nc_primary_transcript	methionine_tRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000223	"A primary transcript encoding methionyl tRNA (SO:0000266)." [SO:ke]	1903255	SOFA	SOFA	sequence	3	SO	primary_transcript	methionine_tRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000223	"A primary transcript encoding methionyl tRNA (SO:0000266)." [SO:ke]	2927738	SOFA	SOFA	sequence	4	SO	transcript	methionine_tRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000223	"A primary transcript encoding methionyl tRNA (SO:0000266)." [SO:ke]	4001144	SOFA	SOFA	sequence	5	SO	gene_member_region	methionine_tRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000223	"A primary transcript encoding methionyl tRNA (SO:0000266)." [SO:ke]	4965768	SOFA	SOFA	sequence	6	SO	biological_region	methionine_tRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000223	"A primary transcript encoding methionyl tRNA (SO:0000266)." [SO:ke]	5740764	SOFA	SOFA	sequence	7	SO	region	methionine_tRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000223	"A primary transcript encoding methionyl tRNA (SO:0000266)." [SO:ke]	6310764	SOFA	SOFA	sequence	8	SO	sequence_feature	methionine_tRNA_primary_transcript
SO:0000224	\N	\N	"A primary transcript encoding phenylalanyl tRNA (SO:0000267)." [SO:ke]	SO:0000224	"A primary transcript encoding phenylalanyl tRNA (SO:0000267)." [SO:ke]	45193	\N	\N	sequence	0	SO	phenylalanine_tRNA_primary_transcript	phenylalanine_tRNA_primary_transcript
SO:0000210	SO:0000224	\N	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	SO:0000224	"A primary transcript encoding phenylalanyl tRNA (SO:0000267)." [SO:ke]	489790	\N	\N	sequence	1	SO	tRNA_primary_transcript	phenylalanine_tRNA_primary_transcript
SO:0000483	SO:0000210	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000224	"A primary transcript encoding phenylalanyl tRNA (SO:0000267)." [SO:ke]	1072224	\N	SOFA	sequence	2	SO	nc_primary_transcript	phenylalanine_tRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000224	"A primary transcript encoding phenylalanyl tRNA (SO:0000267)." [SO:ke]	1903256	SOFA	SOFA	sequence	3	SO	primary_transcript	phenylalanine_tRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000224	"A primary transcript encoding phenylalanyl tRNA (SO:0000267)." [SO:ke]	2927739	SOFA	SOFA	sequence	4	SO	transcript	phenylalanine_tRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000224	"A primary transcript encoding phenylalanyl tRNA (SO:0000267)." [SO:ke]	4001145	SOFA	SOFA	sequence	5	SO	gene_member_region	phenylalanine_tRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000224	"A primary transcript encoding phenylalanyl tRNA (SO:0000267)." [SO:ke]	4965769	SOFA	SOFA	sequence	6	SO	biological_region	phenylalanine_tRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000224	"A primary transcript encoding phenylalanyl tRNA (SO:0000267)." [SO:ke]	5740765	SOFA	SOFA	sequence	7	SO	region	phenylalanine_tRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000224	"A primary transcript encoding phenylalanyl tRNA (SO:0000267)." [SO:ke]	6310765	SOFA	SOFA	sequence	8	SO	sequence_feature	phenylalanine_tRNA_primary_transcript
SO:0000225	\N	\N	"A primary transcript encoding prolyl tRNA (SO:0000268)." [SO:ke]	SO:0000225	"A primary transcript encoding prolyl tRNA (SO:0000268)." [SO:ke]	45194	\N	\N	sequence	0	SO	proline_tRNA_primary_transcript	proline_tRNA_primary_transcript
SO:0000210	SO:0000225	\N	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	SO:0000225	"A primary transcript encoding prolyl tRNA (SO:0000268)." [SO:ke]	489791	\N	\N	sequence	1	SO	tRNA_primary_transcript	proline_tRNA_primary_transcript
SO:0000483	SO:0000210	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000225	"A primary transcript encoding prolyl tRNA (SO:0000268)." [SO:ke]	1072225	\N	SOFA	sequence	2	SO	nc_primary_transcript	proline_tRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000225	"A primary transcript encoding prolyl tRNA (SO:0000268)." [SO:ke]	1903257	SOFA	SOFA	sequence	3	SO	primary_transcript	proline_tRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000225	"A primary transcript encoding prolyl tRNA (SO:0000268)." [SO:ke]	2927740	SOFA	SOFA	sequence	4	SO	transcript	proline_tRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000225	"A primary transcript encoding prolyl tRNA (SO:0000268)." [SO:ke]	4001146	SOFA	SOFA	sequence	5	SO	gene_member_region	proline_tRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000225	"A primary transcript encoding prolyl tRNA (SO:0000268)." [SO:ke]	4965770	SOFA	SOFA	sequence	6	SO	biological_region	proline_tRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000225	"A primary transcript encoding prolyl tRNA (SO:0000268)." [SO:ke]	5740766	SOFA	SOFA	sequence	7	SO	region	proline_tRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000225	"A primary transcript encoding prolyl tRNA (SO:0000268)." [SO:ke]	6310766	SOFA	SOFA	sequence	8	SO	sequence_feature	proline_tRNA_primary_transcript
SO:0000226	\N	\N	"A primary transcript encoding seryl tRNA (SO:000269)." [SO:ke]	SO:0000226	"A primary transcript encoding seryl tRNA (SO:000269)." [SO:ke]	45195	\N	\N	sequence	0	SO	serine_tRNA_primary_transcript	serine_tRNA_primary_transcript
SO:0000210	SO:0000226	\N	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	SO:0000226	"A primary transcript encoding seryl tRNA (SO:000269)." [SO:ke]	489792	\N	\N	sequence	1	SO	tRNA_primary_transcript	serine_tRNA_primary_transcript
SO:0000483	SO:0000210	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000226	"A primary transcript encoding seryl tRNA (SO:000269)." [SO:ke]	1072226	\N	SOFA	sequence	2	SO	nc_primary_transcript	serine_tRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000226	"A primary transcript encoding seryl tRNA (SO:000269)." [SO:ke]	1903258	SOFA	SOFA	sequence	3	SO	primary_transcript	serine_tRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000226	"A primary transcript encoding seryl tRNA (SO:000269)." [SO:ke]	2927741	SOFA	SOFA	sequence	4	SO	transcript	serine_tRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000226	"A primary transcript encoding seryl tRNA (SO:000269)." [SO:ke]	4001147	SOFA	SOFA	sequence	5	SO	gene_member_region	serine_tRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000226	"A primary transcript encoding seryl tRNA (SO:000269)." [SO:ke]	4965771	SOFA	SOFA	sequence	6	SO	biological_region	serine_tRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000226	"A primary transcript encoding seryl tRNA (SO:000269)." [SO:ke]	5740767	SOFA	SOFA	sequence	7	SO	region	serine_tRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000226	"A primary transcript encoding seryl tRNA (SO:000269)." [SO:ke]	6310767	SOFA	SOFA	sequence	8	SO	sequence_feature	serine_tRNA_primary_transcript
SO:0000227	\N	\N	"A primary transcript encoding threonyl tRNA (SO:000270)." [SO:ke]	SO:0000227	"A primary transcript encoding threonyl tRNA (SO:000270)." [SO:ke]	45196	\N	\N	sequence	0	SO	threonine_tRNA_primary_transcript	threonine_tRNA_primary_transcript
SO:0000210	SO:0000227	\N	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	SO:0000227	"A primary transcript encoding threonyl tRNA (SO:000270)." [SO:ke]	489793	\N	\N	sequence	1	SO	tRNA_primary_transcript	threonine_tRNA_primary_transcript
SO:0000483	SO:0000210	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000227	"A primary transcript encoding threonyl tRNA (SO:000270)." [SO:ke]	1072227	\N	SOFA	sequence	2	SO	nc_primary_transcript	threonine_tRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000227	"A primary transcript encoding threonyl tRNA (SO:000270)." [SO:ke]	1903259	SOFA	SOFA	sequence	3	SO	primary_transcript	threonine_tRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000227	"A primary transcript encoding threonyl tRNA (SO:000270)." [SO:ke]	2927742	SOFA	SOFA	sequence	4	SO	transcript	threonine_tRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000227	"A primary transcript encoding threonyl tRNA (SO:000270)." [SO:ke]	4001148	SOFA	SOFA	sequence	5	SO	gene_member_region	threonine_tRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000227	"A primary transcript encoding threonyl tRNA (SO:000270)." [SO:ke]	4965772	SOFA	SOFA	sequence	6	SO	biological_region	threonine_tRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000227	"A primary transcript encoding threonyl tRNA (SO:000270)." [SO:ke]	5740768	SOFA	SOFA	sequence	7	SO	region	threonine_tRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000227	"A primary transcript encoding threonyl tRNA (SO:000270)." [SO:ke]	6310768	SOFA	SOFA	sequence	8	SO	sequence_feature	threonine_tRNA_primary_transcript
SO:0000228	\N	\N	"A primary transcript encoding tryptophanyl tRNA (SO:000271)." [SO:ke]	SO:0000228	"A primary transcript encoding tryptophanyl tRNA (SO:000271)." [SO:ke]	45197	\N	\N	sequence	0	SO	tryptophan_tRNA_primary_transcript	tryptophan_tRNA_primary_transcript
SO:0000210	SO:0000228	\N	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	SO:0000228	"A primary transcript encoding tryptophanyl tRNA (SO:000271)." [SO:ke]	489794	\N	\N	sequence	1	SO	tRNA_primary_transcript	tryptophan_tRNA_primary_transcript
SO:0000483	SO:0000210	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000228	"A primary transcript encoding tryptophanyl tRNA (SO:000271)." [SO:ke]	1072228	\N	SOFA	sequence	2	SO	nc_primary_transcript	tryptophan_tRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000228	"A primary transcript encoding tryptophanyl tRNA (SO:000271)." [SO:ke]	1903260	SOFA	SOFA	sequence	3	SO	primary_transcript	tryptophan_tRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000228	"A primary transcript encoding tryptophanyl tRNA (SO:000271)." [SO:ke]	2927743	SOFA	SOFA	sequence	4	SO	transcript	tryptophan_tRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000228	"A primary transcript encoding tryptophanyl tRNA (SO:000271)." [SO:ke]	4001149	SOFA	SOFA	sequence	5	SO	gene_member_region	tryptophan_tRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000228	"A primary transcript encoding tryptophanyl tRNA (SO:000271)." [SO:ke]	4965773	SOFA	SOFA	sequence	6	SO	biological_region	tryptophan_tRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000228	"A primary transcript encoding tryptophanyl tRNA (SO:000271)." [SO:ke]	5740769	SOFA	SOFA	sequence	7	SO	region	tryptophan_tRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000228	"A primary transcript encoding tryptophanyl tRNA (SO:000271)." [SO:ke]	6310769	SOFA	SOFA	sequence	8	SO	sequence_feature	tryptophan_tRNA_primary_transcript
SO:0000229	\N	\N	"A primary transcript encoding tyrosyl tRNA (SO:000272)." [SO:ke]	SO:0000229	"A primary transcript encoding tyrosyl tRNA (SO:000272)." [SO:ke]	45198	\N	\N	sequence	0	SO	tyrosine_tRNA_primary_transcript	tyrosine_tRNA_primary_transcript
SO:0000210	SO:0000229	\N	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	SO:0000229	"A primary transcript encoding tyrosyl tRNA (SO:000272)." [SO:ke]	489795	\N	\N	sequence	1	SO	tRNA_primary_transcript	tyrosine_tRNA_primary_transcript
SO:0000483	SO:0000210	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000229	"A primary transcript encoding tyrosyl tRNA (SO:000272)." [SO:ke]	1072229	\N	SOFA	sequence	2	SO	nc_primary_transcript	tyrosine_tRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000229	"A primary transcript encoding tyrosyl tRNA (SO:000272)." [SO:ke]	1903261	SOFA	SOFA	sequence	3	SO	primary_transcript	tyrosine_tRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000229	"A primary transcript encoding tyrosyl tRNA (SO:000272)." [SO:ke]	2927744	SOFA	SOFA	sequence	4	SO	transcript	tyrosine_tRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000229	"A primary transcript encoding tyrosyl tRNA (SO:000272)." [SO:ke]	4001150	SOFA	SOFA	sequence	5	SO	gene_member_region	tyrosine_tRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000229	"A primary transcript encoding tyrosyl tRNA (SO:000272)." [SO:ke]	4965774	SOFA	SOFA	sequence	6	SO	biological_region	tyrosine_tRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000229	"A primary transcript encoding tyrosyl tRNA (SO:000272)." [SO:ke]	5740770	SOFA	SOFA	sequence	7	SO	region	tyrosine_tRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000229	"A primary transcript encoding tyrosyl tRNA (SO:000272)." [SO:ke]	6310770	SOFA	SOFA	sequence	8	SO	sequence_feature	tyrosine_tRNA_primary_transcript
SO:0000230	\N	\N	"A primary transcript encoding valyl tRNA (SO:000273)." [SO:ke]	SO:0000230	"A primary transcript encoding valyl tRNA (SO:000273)." [SO:ke]	45199	\N	\N	sequence	0	SO	valine_tRNA_primary_transcript	valine_tRNA_primary_transcript
SO:0000210	SO:0000230	\N	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	SO:0000230	"A primary transcript encoding valyl tRNA (SO:000273)." [SO:ke]	489796	\N	\N	sequence	1	SO	tRNA_primary_transcript	valine_tRNA_primary_transcript
SO:0000483	SO:0000210	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000230	"A primary transcript encoding valyl tRNA (SO:000273)." [SO:ke]	1072230	\N	SOFA	sequence	2	SO	nc_primary_transcript	valine_tRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000230	"A primary transcript encoding valyl tRNA (SO:000273)." [SO:ke]	1903262	SOFA	SOFA	sequence	3	SO	primary_transcript	valine_tRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000230	"A primary transcript encoding valyl tRNA (SO:000273)." [SO:ke]	2927745	SOFA	SOFA	sequence	4	SO	transcript	valine_tRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000230	"A primary transcript encoding valyl tRNA (SO:000273)." [SO:ke]	4001151	SOFA	SOFA	sequence	5	SO	gene_member_region	valine_tRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000230	"A primary transcript encoding valyl tRNA (SO:000273)." [SO:ke]	4965775	SOFA	SOFA	sequence	6	SO	biological_region	valine_tRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000230	"A primary transcript encoding valyl tRNA (SO:000273)." [SO:ke]	5740771	SOFA	SOFA	sequence	7	SO	region	valine_tRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000230	"A primary transcript encoding valyl tRNA (SO:000273)." [SO:ke]	6310771	SOFA	SOFA	sequence	8	SO	sequence_feature	valine_tRNA_primary_transcript
SO:0000231	\N	\N	"A primary transcript encoding a small nuclear RNA (SO:0000274)." [SO:ke]	SO:0000231	"A primary transcript encoding a small nuclear RNA (SO:0000274)." [SO:ke]	45200	\N	\N	sequence	0	SO	snRNA_primary_transcript	snRNA_primary_transcript
SO:0000483	SO:0000231	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000231	"A primary transcript encoding a small nuclear RNA (SO:0000274)." [SO:ke]	489797	\N	SOFA	sequence	1	SO	nc_primary_transcript	snRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000231	"A primary transcript encoding a small nuclear RNA (SO:0000274)." [SO:ke]	1072231	SOFA	SOFA	sequence	2	SO	primary_transcript	snRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000231	"A primary transcript encoding a small nuclear RNA (SO:0000274)." [SO:ke]	1903263	SOFA	SOFA	sequence	3	SO	transcript	snRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000231	"A primary transcript encoding a small nuclear RNA (SO:0000274)." [SO:ke]	2927746	SOFA	SOFA	sequence	4	SO	gene_member_region	snRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000231	"A primary transcript encoding a small nuclear RNA (SO:0000274)." [SO:ke]	4001152	SOFA	SOFA	sequence	5	SO	biological_region	snRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000231	"A primary transcript encoding a small nuclear RNA (SO:0000274)." [SO:ke]	4965776	SOFA	SOFA	sequence	6	SO	region	snRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000231	"A primary transcript encoding a small nuclear RNA (SO:0000274)." [SO:ke]	5740772	SOFA	SOFA	sequence	7	SO	sequence_feature	snRNA_primary_transcript
SO:0000232	\N	\N	"A primary transcript encoding a small nucleolar mRNA (SO:0000275)." [SO:ke]	SO:0000232	"A primary transcript encoding a small nucleolar mRNA (SO:0000275)." [SO:ke]	45201	\N	\N	sequence	0	SO	snoRNA_primary_transcript	snoRNA_primary_transcript
SO:0000483	SO:0000232	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000232	"A primary transcript encoding a small nucleolar mRNA (SO:0000275)." [SO:ke]	489798	\N	SOFA	sequence	1	SO	nc_primary_transcript	snoRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000232	"A primary transcript encoding a small nucleolar mRNA (SO:0000275)." [SO:ke]	1072232	SOFA	SOFA	sequence	2	SO	primary_transcript	snoRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000232	"A primary transcript encoding a small nucleolar mRNA (SO:0000275)." [SO:ke]	1903264	SOFA	SOFA	sequence	3	SO	transcript	snoRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000232	"A primary transcript encoding a small nucleolar mRNA (SO:0000275)." [SO:ke]	2927747	SOFA	SOFA	sequence	4	SO	gene_member_region	snoRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000232	"A primary transcript encoding a small nucleolar mRNA (SO:0000275)." [SO:ke]	4001153	SOFA	SOFA	sequence	5	SO	biological_region	snoRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000232	"A primary transcript encoding a small nucleolar mRNA (SO:0000275)." [SO:ke]	4965777	SOFA	SOFA	sequence	6	SO	region	snoRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000232	"A primary transcript encoding a small nucleolar mRNA (SO:0000275)." [SO:ke]	5740773	SOFA	SOFA	sequence	7	SO	sequence_feature	snoRNA_primary_transcript
SO:0000233	\N	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000233	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	45202	\N	SOFA	sequence	0	SO	mature_transcript	mature_transcript
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000233	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	489799	SOFA	SOFA	sequence	1	SO	transcript	mature_transcript
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000233	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	1072233	SOFA	SOFA	sequence	2	SO	gene_member_region	mature_transcript
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000233	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	1903265	SOFA	SOFA	sequence	3	SO	biological_region	mature_transcript
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000233	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	2927748	SOFA	SOFA	sequence	4	SO	region	mature_transcript
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000233	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	4001154	SOFA	SOFA	sequence	5	SO	sequence_feature	mature_transcript
SO:0000234	\N	SOFA	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000234	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	45203	\N	SOFA	sequence	0	SO	mRNA	mRNA
SO:0000233	SO:0000234	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000234	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	489800	SOFA	SOFA	sequence	1	SO	mature_transcript	mRNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000234	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	1072234	SOFA	SOFA	sequence	2	SO	transcript	mRNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000234	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	1903266	SOFA	SOFA	sequence	3	SO	gene_member_region	mRNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000234	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	2927749	SOFA	SOFA	sequence	4	SO	biological_region	mRNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000234	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	4001155	SOFA	SOFA	sequence	5	SO	region	mRNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000234	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	4965778	SOFA	SOFA	sequence	6	SO	sequence_feature	mRNA
SO:0000235	\N	SOFA	"A region of a nucleotide molecule that binds a Transcription Factor or Transcription Factor complex [GO:0005667]." [SO:ke]	SO:0000235	"A region of a nucleotide molecule that binds a Transcription Factor or Transcription Factor complex [GO:0005667]." [SO:ke]	45204	\N	SOFA	sequence	0	SO	TF_binding_site	TF_binding_site
SO:0001654	SO:0000235	SOFA	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	SO:0000235	"A region of a nucleotide molecule that binds a Transcription Factor or Transcription Factor complex [GO:0005667]." [SO:ke]	489801	SOFA	SOFA	sequence	1	SO	nucleotide_to_protein_binding_site	TF_binding_site
SO:0001679	SO:0000235	SOFA	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000235	"A region of a nucleotide molecule that binds a Transcription Factor or Transcription Factor complex [GO:0005667]." [SO:ke]	489802	SOFA	SOFA	sequence	1	SO	transcription_regulatory_region	TF_binding_site
SO:0000410	SO:0001654	SOFA	"A binding site that, in the molecule, interacts selectively and non-covalently with polypeptide molecules." [SO:ke]	SO:0000235	"A region of a nucleotide molecule that binds a Transcription Factor or Transcription Factor complex [GO:0005667]." [SO:ke]	1072235	SOFA	SOFA	sequence	2	SO	protein_binding_site	TF_binding_site
SO:0005836	SO:0001679	SOFA	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000235	"A region of a nucleotide molecule that binds a Transcription Factor or Transcription Factor complex [GO:0005667]." [SO:ke]	1072236	SOFA	SOFA	sequence	2	SO	regulatory_region	TF_binding_site
SO:0000409	SO:0000410	SOFA	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0000235	"A region of a nucleotide molecule that binds a Transcription Factor or Transcription Factor complex [GO:0005667]." [SO:ke]	1903267	SOFA	biosapiens,SOFA	sequence	3	SO	binding_site	TF_binding_site
SO:0000831	SO:0005836	SOFA	"A region of a gene." [SO:ke]	SO:0000235	"A region of a nucleotide molecule that binds a Transcription Factor or Transcription Factor complex [GO:0005667]." [SO:ke]	1903268	SOFA	SOFA	sequence	3	SO	gene_member_region	TF_binding_site
SO:0001411	SO:0000409	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000235	"A region of a nucleotide molecule that binds a Transcription Factor or Transcription Factor complex [GO:0005667]." [SO:ke]	2927750	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	TF_binding_site
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000235	"A region of a nucleotide molecule that binds a Transcription Factor or Transcription Factor complex [GO:0005667]." [SO:ke]	2927751	SOFA	SOFA	sequence	4	SO	biological_region	TF_binding_site
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000235	"A region of a nucleotide molecule that binds a Transcription Factor or Transcription Factor complex [GO:0005667]." [SO:ke]	4001156	SOFA	SOFA	sequence	5	SO	region	TF_binding_site
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000235	"A region of a nucleotide molecule that binds a Transcription Factor or Transcription Factor complex [GO:0005667]." [SO:ke]	4965779	SOFA	SOFA	sequence	6	SO	sequence_feature	TF_binding_site
SO:0000236	\N	SOFA	"The in-frame interval between the stop codons of a reading frame which when read as sequential triplets, has the potential of encoding a sequential string of amino acids. TER(NNN)nTER." [SGD:rb, SO:ma]	SO:0000236	"The in-frame interval between the stop codons of a reading frame which when read as sequential triplets, has the potential of encoding a sequential string of amino acids. TER(NNN)nTER." [SGD:rb, SO:ma]	45205	\N	SOFA	sequence	0	SO	ORF	ORF
SO:0000717	SO:0000236	SOFA	"A nucleic acid sequence that when read as sequential triplets, has the potential of encoding a sequential string of amino acids. It need not contain the start or stop codon." [SGD:rb]	SO:0000236	"The in-frame interval between the stop codons of a reading frame which when read as sequential triplets, has the potential of encoding a sequential string of amino acids. TER(NNN)nTER." [SGD:rb, SO:ma]	489803	SOFA	SOFA	sequence	1	SO	reading_frame	ORF
SO:0001410	SO:0000717	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000236	"The in-frame interval between the stop codons of a reading frame which when read as sequential triplets, has the potential of encoding a sequential string of amino acids. TER(NNN)nTER." [SGD:rb, SO:ma]	1072237	SOFA	SOFA	sequence	2	SO	experimental_feature	ORF
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000236	"The in-frame interval between the stop codons of a reading frame which when read as sequential triplets, has the potential of encoding a sequential string of amino acids. TER(NNN)nTER." [SGD:rb, SO:ma]	1903269	SOFA	SOFA	sequence	3	SO	region	ORF
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000236	"The in-frame interval between the stop codons of a reading frame which when read as sequential triplets, has the potential of encoding a sequential string of amino acids. TER(NNN)nTER." [SGD:rb, SO:ma]	2927752	SOFA	SOFA	sequence	4	SO	sequence_feature	ORF
SO:0000237	\N	\N	"" []	SO:0000237	"" []	45206	\N	\N	sequence	0	SO	transcript_attribute	transcript_attribute
SO:0000733	SO:0000237	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000237	"" []	489804	\N	\N	sequence	1	SO	feature_attribute	transcript_attribute
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000237	"" []	1072238	\N	\N	sequence	2	SO	sequence_attribute	transcript_attribute
SO:0000238	\N	\N	"A transposable element with extensive secondary structure, characterized by large modular imperfect long inverted repeats." [http://www.genetics.org/cgi/reprint/156/4/1983.pdf]	SO:0000238	"A transposable element with extensive secondary structure, characterized by large modular imperfect long inverted repeats." [http://www.genetics.org/cgi/reprint/156/4/1983.pdf]	45207	\N	\N	sequence	0	SO	foldback_element	foldback_element
SO:0000182	SO:0000238	\N	"A transposon where the mechanism of transposition is via a DNA intermediate." [SO:ke]	SO:0000238	"A transposable element with extensive secondary structure, characterized by large modular imperfect long inverted repeats." [http://www.genetics.org/cgi/reprint/156/4/1983.pdf]	489805	\N	\N	sequence	1	SO	DNA_transposon	foldback_element
SO:0000101	SO:0000182	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000238	"A transposable element with extensive secondary structure, characterized by large modular imperfect long inverted repeats." [http://www.genetics.org/cgi/reprint/156/4/1983.pdf]	1072239	\N	SOFA	sequence	2	SO	transposable_element	foldback_element
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000238	"A transposable element with extensive secondary structure, characterized by large modular imperfect long inverted repeats." [http://www.genetics.org/cgi/reprint/156/4/1983.pdf]	1903270	SOFA	SOFA	sequence	3	SO	integrated_mobile_genetic_element	foldback_element
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000238	"A transposable element with extensive secondary structure, characterized by large modular imperfect long inverted repeats." [http://www.genetics.org/cgi/reprint/156/4/1983.pdf]	2927753	SOFA	SOFA	sequence	4	SO	mobile_genetic_element	foldback_element
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000238	"A transposable element with extensive secondary structure, characterized by large modular imperfect long inverted repeats." [http://www.genetics.org/cgi/reprint/156/4/1983.pdf]	4001157	SOFA	SOFA	sequence	5	SO	biological_region	foldback_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000238	"A transposable element with extensive secondary structure, characterized by large modular imperfect long inverted repeats." [http://www.genetics.org/cgi/reprint/156/4/1983.pdf]	4965780	SOFA	SOFA	sequence	6	SO	region	foldback_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000238	"A transposable element with extensive secondary structure, characterized by large modular imperfect long inverted repeats." [http://www.genetics.org/cgi/reprint/156/4/1983.pdf]	5740774	SOFA	SOFA	sequence	7	SO	sequence_feature	foldback_element
SO:0000239	\N	SOFA	"The sequences extending on either side of a specific region." [SO:ke]	SO:0000239	"The sequences extending on either side of a specific region." [SO:ke]	45208	\N	SOFA	sequence	0	SO	flanking_region	flanking_region
SO:0001412	SO:0000239	SOFA	"A region that is defined according to its relations with other regions within the same sequence." [SO:cb]	SO:0000239	"The sequences extending on either side of a specific region." [SO:ke]	489806	SOFA	SOFA	sequence	1	SO	topologically_defined_region	flanking_region
SO:0000001	SO:0001412	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000239	"The sequences extending on either side of a specific region." [SO:ke]	1072240	SOFA	SOFA	sequence	2	SO	region	flanking_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000239	"The sequences extending on either side of a specific region." [SO:ke]	1903271	SOFA	SOFA	sequence	3	SO	sequence_feature	flanking_region
SO:0000240	\N	\N	"" []	SO:0000240	"" []	45209	\N	\N	sequence	0	SO	chromosome_variation	chromosome_variation
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0000240	"" []	489807	\N	\N	sequence	1	SO	variant_collection	chromosome_variation
SO:0001524	SO:0000240	\N	"" []	SO:0000240	"" []	489808	\N	\N	sequence	1	SO	chromosomally_aberrant_genome	chromosome_variation
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000240	"" []	1072241	\N	\N	sequence	2	SO	sequence_collection	chromosome_variation
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0000240	"" []	1072242	\N	\N	sequence	2	SO	variant_genome	chromosome_variation
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0000240	"" []	1903272	\N	\N	sequence	3	SO	genome	chromosome_variation
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000240	"" []	2927754	\N	\N	sequence	4	SO	sequence_collection	chromosome_variation
SO:0000241	\N	\N	"A UTR bordered by the terminal and initial codons of two CDSs in a polycistronic transcript. Every UTR is either 5', 3' or internal." [SO:cjm]	SO:0000241	"A UTR bordered by the terminal and initial codons of two CDSs in a polycistronic transcript. Every UTR is either 5', 3' or internal." [SO:cjm]	45210	\N	\N	sequence	0	SO	internal_UTR	internal_UTR
SO:0000203	SO:0000241	\N	"Messenger RNA sequences that are untranslated and lie five prime or three prime to sequences which are translated." [SO:ke]	SO:0000241	"A UTR bordered by the terminal and initial codons of two CDSs in a polycistronic transcript. Every UTR is either 5', 3' or internal." [SO:cjm]	489809	\N	SOFA	sequence	1	SO	UTR	internal_UTR
SO:0000836	SO:0000203	\N	"A region of an mRNA." [SO:cb]	SO:0000241	"A UTR bordered by the terminal and initial codons of two CDSs in a polycistronic transcript. Every UTR is either 5', 3' or internal." [SO:cjm]	1072243	SOFA	SOFA	sequence	2	SO	mRNA_region	internal_UTR
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000241	"A UTR bordered by the terminal and initial codons of two CDSs in a polycistronic transcript. Every UTR is either 5', 3' or internal." [SO:cjm]	1903273	SOFA	SOFA	sequence	3	SO	mRNA	internal_UTR
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:0000241	"A UTR bordered by the terminal and initial codons of two CDSs in a polycistronic transcript. Every UTR is either 5', 3' or internal." [SO:cjm]	1903274	SOFA	SOFA	sequence	3	SO	mature_transcript_region	internal_UTR
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000241	"A UTR bordered by the terminal and initial codons of two CDSs in a polycistronic transcript. Every UTR is either 5', 3' or internal." [SO:cjm]	2927755	SOFA	SOFA	sequence	4	SO	mature_transcript	internal_UTR
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0000241	"A UTR bordered by the terminal and initial codons of two CDSs in a polycistronic transcript. Every UTR is either 5', 3' or internal." [SO:cjm]	2927756	SOFA	SOFA	sequence	4	SO	transcript_region	internal_UTR
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000241	"A UTR bordered by the terminal and initial codons of two CDSs in a polycistronic transcript. Every UTR is either 5', 3' or internal." [SO:cjm]	4001158	SOFA	SOFA	sequence	5	SO	transcript	internal_UTR
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000241	"A UTR bordered by the terminal and initial codons of two CDSs in a polycistronic transcript. Every UTR is either 5', 3' or internal." [SO:cjm]	4001159	SOFA	SOFA	sequence	5	SO	transcript	internal_UTR
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000241	"A UTR bordered by the terminal and initial codons of two CDSs in a polycistronic transcript. Every UTR is either 5', 3' or internal." [SO:cjm]	4001160	SOFA	SOFA	sequence	5	SO	biological_region	internal_UTR
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000241	"A UTR bordered by the terminal and initial codons of two CDSs in a polycistronic transcript. Every UTR is either 5', 3' or internal." [SO:cjm]	4965781	SOFA	SOFA	sequence	6	SO	gene_member_region	internal_UTR
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000241	"A UTR bordered by the terminal and initial codons of two CDSs in a polycistronic transcript. Every UTR is either 5', 3' or internal." [SO:cjm]	6310772	SOFA	SOFA	sequence	8	SO	region	internal_UTR
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000241	"A UTR bordered by the terminal and initial codons of two CDSs in a polycistronic transcript. Every UTR is either 5', 3' or internal." [SO:cjm]	5740775	SOFA	SOFA	sequence	7	SO	biological_region	internal_UTR
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000241	"A UTR bordered by the terminal and initial codons of two CDSs in a polycistronic transcript. Every UTR is either 5', 3' or internal." [SO:cjm]	6550239	SOFA	SOFA	sequence	9	SO	sequence_feature	internal_UTR
SO:0000242	\N	\N	"The untranslated sequence separating the 'cistrons' of multicistronic mRNA." [SO:ke]	SO:0000242	"The untranslated sequence separating the 'cistrons' of multicistronic mRNA." [SO:ke]	45211	\N	\N	sequence	0	SO	untranslated_region_polycistronic_mRNA	untranslated_region_polycistronic_mRNA
SO:0000203	SO:0000242	\N	"Messenger RNA sequences that are untranslated and lie five prime or three prime to sequences which are translated." [SO:ke]	SO:0000242	"The untranslated sequence separating the 'cistrons' of multicistronic mRNA." [SO:ke]	489810	\N	SOFA	sequence	1	SO	UTR	untranslated_region_polycistronic_mRNA
SO:0000836	SO:0000203	\N	"A region of an mRNA." [SO:cb]	SO:0000242	"The untranslated sequence separating the 'cistrons' of multicistronic mRNA." [SO:ke]	1072244	SOFA	SOFA	sequence	2	SO	mRNA_region	untranslated_region_polycistronic_mRNA
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000242	"The untranslated sequence separating the 'cistrons' of multicistronic mRNA." [SO:ke]	1903275	SOFA	SOFA	sequence	3	SO	mRNA	untranslated_region_polycistronic_mRNA
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:0000242	"The untranslated sequence separating the 'cistrons' of multicistronic mRNA." [SO:ke]	1903276	SOFA	SOFA	sequence	3	SO	mature_transcript_region	untranslated_region_polycistronic_mRNA
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000242	"The untranslated sequence separating the 'cistrons' of multicistronic mRNA." [SO:ke]	2927757	SOFA	SOFA	sequence	4	SO	mature_transcript	untranslated_region_polycistronic_mRNA
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0000242	"The untranslated sequence separating the 'cistrons' of multicistronic mRNA." [SO:ke]	2927758	SOFA	SOFA	sequence	4	SO	transcript_region	untranslated_region_polycistronic_mRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000242	"The untranslated sequence separating the 'cistrons' of multicistronic mRNA." [SO:ke]	4001161	SOFA	SOFA	sequence	5	SO	transcript	untranslated_region_polycistronic_mRNA
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000242	"The untranslated sequence separating the 'cistrons' of multicistronic mRNA." [SO:ke]	4001162	SOFA	SOFA	sequence	5	SO	transcript	untranslated_region_polycistronic_mRNA
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000242	"The untranslated sequence separating the 'cistrons' of multicistronic mRNA." [SO:ke]	4001163	SOFA	SOFA	sequence	5	SO	biological_region	untranslated_region_polycistronic_mRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000242	"The untranslated sequence separating the 'cistrons' of multicistronic mRNA." [SO:ke]	4965783	SOFA	SOFA	sequence	6	SO	gene_member_region	untranslated_region_polycistronic_mRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000242	"The untranslated sequence separating the 'cistrons' of multicistronic mRNA." [SO:ke]	6310773	SOFA	SOFA	sequence	8	SO	region	untranslated_region_polycistronic_mRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000242	"The untranslated sequence separating the 'cistrons' of multicistronic mRNA." [SO:ke]	5740777	SOFA	SOFA	sequence	7	SO	biological_region	untranslated_region_polycistronic_mRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000242	"The untranslated sequence separating the 'cistrons' of multicistronic mRNA." [SO:ke]	6550240	SOFA	SOFA	sequence	9	SO	sequence_feature	untranslated_region_polycistronic_mRNA
SO:0000243	\N	\N	"Sequence element that recruits a ribosomal subunit to internal mRNA for translation initiation." [SO:ke]	SO:0000243	"Sequence element that recruits a ribosomal subunit to internal mRNA for translation initiation." [SO:ke]	45212	\N	\N	sequence	0	SO	internal_ribosome_entry_site	internal_ribosome_entry_site
SO:0000139	SO:0000243	\N	"Region in mRNA where ribosome assembles." [SO:ke]	SO:0000243	"Sequence element that recruits a ribosomal subunit to internal mRNA for translation initiation." [SO:ke]	489811	\N	SOFA	sequence	1	SO	ribosome_entry_site	internal_ribosome_entry_site
SO:0000204	SO:0000139	\N	"A region at the 5' end of a mature transcript (preceding the initiation codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000243	"Sequence element that recruits a ribosomal subunit to internal mRNA for translation initiation." [SO:ke]	1072245	SOFA	SOFA	sequence	2	SO	five_prime_UTR	internal_ribosome_entry_site
SO:0000836	SO:0000139	\N	"A region of an mRNA." [SO:cb]	SO:0000243	"Sequence element that recruits a ribosomal subunit to internal mRNA for translation initiation." [SO:ke]	1072246	SOFA	SOFA	sequence	2	SO	mRNA_region	internal_ribosome_entry_site
SO:0000203	SO:0000204	\N	"Messenger RNA sequences that are untranslated and lie five prime or three prime to sequences which are translated." [SO:ke]	SO:0000243	"Sequence element that recruits a ribosomal subunit to internal mRNA for translation initiation." [SO:ke]	1903277	SOFA	SOFA	sequence	3	SO	UTR	internal_ribosome_entry_site
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000243	"Sequence element that recruits a ribosomal subunit to internal mRNA for translation initiation." [SO:ke]	4001164	SOFA	SOFA	sequence	5	SO	mRNA	internal_ribosome_entry_site
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:0000243	"Sequence element that recruits a ribosomal subunit to internal mRNA for translation initiation." [SO:ke]	4001165	SOFA	SOFA	sequence	5	SO	mature_transcript_region	internal_ribosome_entry_site
SO:0000836	SO:0000203	\N	"A region of an mRNA." [SO:cb]	SO:0000243	"Sequence element that recruits a ribosomal subunit to internal mRNA for translation initiation." [SO:ke]	2927759	SOFA	SOFA	sequence	4	SO	mRNA_region	internal_ribosome_entry_site
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000243	"Sequence element that recruits a ribosomal subunit to internal mRNA for translation initiation." [SO:ke]	4132281	SOFA	SOFA	sequence	6	SO	mature_transcript	internal_ribosome_entry_site
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0000243	"Sequence element that recruits a ribosomal subunit to internal mRNA for translation initiation." [SO:ke]	4132282	SOFA	SOFA	sequence	6	SO	transcript_region	internal_ribosome_entry_site
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000243	"Sequence element that recruits a ribosomal subunit to internal mRNA for translation initiation." [SO:ke]	5180666	SOFA	SOFA	sequence	7	SO	transcript	internal_ribosome_entry_site
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000243	"Sequence element that recruits a ribosomal subunit to internal mRNA for translation initiation." [SO:ke]	5180667	SOFA	SOFA	sequence	7	SO	transcript	internal_ribosome_entry_site
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000243	"Sequence element that recruits a ribosomal subunit to internal mRNA for translation initiation." [SO:ke]	5180668	SOFA	SOFA	sequence	7	SO	biological_region	internal_ribosome_entry_site
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000243	"Sequence element that recruits a ribosomal subunit to internal mRNA for translation initiation." [SO:ke]	5996370	SOFA	SOFA	sequence	8	SO	gene_member_region	internal_ribosome_entry_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000243	"Sequence element that recruits a ribosomal subunit to internal mRNA for translation initiation." [SO:ke]	6888924	SOFA	SOFA	sequence	10	SO	region	internal_ribosome_entry_site
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000243	"Sequence element that recruits a ribosomal subunit to internal mRNA for translation initiation." [SO:ke]	6550241	SOFA	SOFA	sequence	9	SO	biological_region	internal_ribosome_entry_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000243	"Sequence element that recruits a ribosomal subunit to internal mRNA for translation initiation." [SO:ke]	7048463	SOFA	SOFA	sequence	11	SO	sequence_feature	internal_ribosome_entry_site
SO:0000246	\N	\N	"A attribute describing the addition of a poly A tail to the 3' end of a mRNA molecule." [SO:ke]	SO:0000246	"A attribute describing the addition of a poly A tail to the 3' end of a mRNA molecule." [SO:ke]	45213	\N	\N	sequence	0	SO	polyadenylated	polyadenylated
SO:0000863	SO:0000246	\N	"An attribute describing an mRNA feature." [SO:ke]	SO:0000246	"A attribute describing the addition of a poly A tail to the 3' end of a mRNA molecule." [SO:ke]	489812	\N	\N	sequence	1	SO	mRNA_attribute	polyadenylated
SO:0000237	SO:0000863	\N	"" []	SO:0000246	"A attribute describing the addition of a poly A tail to the 3' end of a mRNA molecule." [SO:ke]	1072247	\N	\N	sequence	2	SO	transcript_attribute	polyadenylated
SO:0000733	SO:0000237	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000246	"A attribute describing the addition of a poly A tail to the 3' end of a mRNA molecule." [SO:ke]	1903280	\N	\N	sequence	3	SO	feature_attribute	polyadenylated
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000246	"A attribute describing the addition of a poly A tail to the 3' end of a mRNA molecule." [SO:ke]	2927762	\N	\N	sequence	4	SO	sequence_attribute	polyadenylated
SO:0000248	\N	\N	"A kind of kind of sequence alteration where the copies of a region present varies across a population." [SO:ke]	SO:0000248	"A kind of kind of sequence alteration where the copies of a region present varies across a population." [SO:ke]	45214	\N	\N	sequence	0	SO	sequence_length_alteration	sequence_length_alteration
SO:0001059	SO:0000248	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0000248	"A kind of kind of sequence alteration where the copies of a region present varies across a population." [SO:ke]	489813	\N	SOFA	sequence	1	SO	sequence_alteration	sequence_length_alteration
SO:0002072	SO:0001059	\N	"" []	SO:0000248	"A kind of kind of sequence alteration where the copies of a region present varies across a population." [SO:ke]	1072248	SOFA	\N	sequence	2	SO	sequence_comparison	sequence_length_alteration
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000248	"A kind of kind of sequence alteration where the copies of a region present varies across a population." [SO:ke]	1903281	\N	SOFA	sequence	3	SO	sequence_feature	sequence_length_alteration
SO:0000250	\N	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0000250	"A post_transcriptionally modified base." [SO:ke]	45215	\N	\N	sequence	0	SO	modified_RNA_base_feature	modified_RNA_base_feature
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0000250	"A post_transcriptionally modified base." [SO:ke]	489814	\N	SOFA	sequence	1	SO	base	modified_RNA_base_feature
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000250	"A post_transcriptionally modified base." [SO:ke]	1072249	SOFA	SOFA	sequence	2	SO	biological_region	modified_RNA_base_feature
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000250	"A post_transcriptionally modified base." [SO:ke]	1903282	SOFA	SOFA	sequence	3	SO	region	modified_RNA_base_feature
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000250	"A post_transcriptionally modified base." [SO:ke]	2927763	SOFA	SOFA	sequence	4	SO	sequence_feature	modified_RNA_base_feature
SO:0000252	\N	SOFA	"RNA that comprises part of a ribosome, and that can provide both structural scaffolding and catalytic activity." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, ISBN:0198506732]	SO:0000252	"RNA that comprises part of a ribosome, and that can provide both structural scaffolding and catalytic activity." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, ISBN:0198506732]	45216	\N	SOFA	sequence	0	SO	rRNA	rRNA
SO:0000655	SO:0000252	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000252	"RNA that comprises part of a ribosome, and that can provide both structural scaffolding and catalytic activity." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, ISBN:0198506732]	489815	SOFA	SOFA	sequence	1	SO	ncRNA	rRNA
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000252	"RNA that comprises part of a ribosome, and that can provide both structural scaffolding and catalytic activity." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, ISBN:0198506732]	1072250	SOFA	SOFA	sequence	2	SO	mature_transcript	rRNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000252	"RNA that comprises part of a ribosome, and that can provide both structural scaffolding and catalytic activity." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, ISBN:0198506732]	1903283	SOFA	SOFA	sequence	3	SO	transcript	rRNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000252	"RNA that comprises part of a ribosome, and that can provide both structural scaffolding and catalytic activity." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, ISBN:0198506732]	2927764	SOFA	SOFA	sequence	4	SO	gene_member_region	rRNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000252	"RNA that comprises part of a ribosome, and that can provide both structural scaffolding and catalytic activity." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, ISBN:0198506732]	4001169	SOFA	SOFA	sequence	5	SO	biological_region	rRNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000252	"RNA that comprises part of a ribosome, and that can provide both structural scaffolding and catalytic activity." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, ISBN:0198506732]	4965787	SOFA	SOFA	sequence	6	SO	region	rRNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000252	"RNA that comprises part of a ribosome, and that can provide both structural scaffolding and catalytic activity." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, ISBN:0198506732]	5740781	SOFA	SOFA	sequence	7	SO	sequence_feature	rRNA
SO:0000253	\N	SOFA	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	SO:0000253	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	45217	\N	SOFA	sequence	0	SO	tRNA	tRNA
SO:0000655	SO:0000253	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000253	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	489816	SOFA	SOFA	sequence	1	SO	ncRNA	tRNA
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000253	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	1072251	SOFA	SOFA	sequence	2	SO	mature_transcript	tRNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000253	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	1903284	SOFA	SOFA	sequence	3	SO	transcript	tRNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000253	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	2927765	SOFA	SOFA	sequence	4	SO	gene_member_region	tRNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000253	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	4001170	SOFA	SOFA	sequence	5	SO	biological_region	tRNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000253	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	4965788	SOFA	SOFA	sequence	6	SO	region	tRNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000253	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	5740782	SOFA	SOFA	sequence	7	SO	sequence_feature	tRNA
SO:0000254	\N	\N	"A tRNA sequence that has an alanine anticodon, and a 3' alanine binding region." [SO:ke]	SO:0000254	"A tRNA sequence that has an alanine anticodon, and a 3' alanine binding region." [SO:ke]	45218	\N	\N	sequence	0	SO	alanyl_tRNA	alanyl_tRNA
SO:0000253	SO:0000254	\N	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	SO:0000254	"A tRNA sequence that has an alanine anticodon, and a 3' alanine binding region." [SO:ke]	489817	\N	SOFA	sequence	1	SO	tRNA	alanyl_tRNA
SO:0000655	SO:0000253	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000254	"A tRNA sequence that has an alanine anticodon, and a 3' alanine binding region." [SO:ke]	1072252	SOFA	SOFA	sequence	2	SO	ncRNA	alanyl_tRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000254	"A tRNA sequence that has an alanine anticodon, and a 3' alanine binding region." [SO:ke]	1903285	SOFA	SOFA	sequence	3	SO	mature_transcript	alanyl_tRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000254	"A tRNA sequence that has an alanine anticodon, and a 3' alanine binding region." [SO:ke]	2927766	SOFA	SOFA	sequence	4	SO	transcript	alanyl_tRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000254	"A tRNA sequence that has an alanine anticodon, and a 3' alanine binding region." [SO:ke]	4001171	SOFA	SOFA	sequence	5	SO	gene_member_region	alanyl_tRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000254	"A tRNA sequence that has an alanine anticodon, and a 3' alanine binding region." [SO:ke]	4965789	SOFA	SOFA	sequence	6	SO	biological_region	alanyl_tRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000254	"A tRNA sequence that has an alanine anticodon, and a 3' alanine binding region." [SO:ke]	5740783	SOFA	SOFA	sequence	7	SO	region	alanyl_tRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000254	"A tRNA sequence that has an alanine anticodon, and a 3' alanine binding region." [SO:ke]	6310774	SOFA	SOFA	sequence	8	SO	sequence_feature	alanyl_tRNA
SO:0000255	\N	\N	"A primary transcript encoding a small ribosomal subunit RNA." [SO:ke]	SO:0000255	"A primary transcript encoding a small ribosomal subunit RNA." [SO:ke]	45219	\N	\N	sequence	0	SO	rRNA_small_subunit_primary_transcript	rRNA_small_subunit_primary_transcript
SO:0000209	SO:0000255	\N	"A primary transcript encoding a ribosomal RNA." [SO:ke]	SO:0000255	"A primary transcript encoding a small ribosomal subunit RNA." [SO:ke]	489818	\N	SOFA	sequence	1	SO	rRNA_primary_transcript	rRNA_small_subunit_primary_transcript
SO:0000483	SO:0000209	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000255	"A primary transcript encoding a small ribosomal subunit RNA." [SO:ke]	1072253	SOFA	SOFA	sequence	2	SO	nc_primary_transcript	rRNA_small_subunit_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000255	"A primary transcript encoding a small ribosomal subunit RNA." [SO:ke]	1903286	SOFA	SOFA	sequence	3	SO	primary_transcript	rRNA_small_subunit_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000255	"A primary transcript encoding a small ribosomal subunit RNA." [SO:ke]	2927767	SOFA	SOFA	sequence	4	SO	transcript	rRNA_small_subunit_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000255	"A primary transcript encoding a small ribosomal subunit RNA." [SO:ke]	4001172	SOFA	SOFA	sequence	5	SO	gene_member_region	rRNA_small_subunit_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000255	"A primary transcript encoding a small ribosomal subunit RNA." [SO:ke]	4965790	SOFA	SOFA	sequence	6	SO	biological_region	rRNA_small_subunit_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000255	"A primary transcript encoding a small ribosomal subunit RNA." [SO:ke]	5740784	SOFA	SOFA	sequence	7	SO	region	rRNA_small_subunit_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000255	"A primary transcript encoding a small ribosomal subunit RNA." [SO:ke]	6310775	SOFA	SOFA	sequence	8	SO	sequence_feature	rRNA_small_subunit_primary_transcript
SO:0000256	\N	\N	"A tRNA sequence that has an asparagine anticodon, and a 3' asparagine binding region." [SO:ke]	SO:0000256	"A tRNA sequence that has an asparagine anticodon, and a 3' asparagine binding region." [SO:ke]	45220	\N	\N	sequence	0	SO	asparaginyl_tRNA	asparaginyl_tRNA
SO:0000253	SO:0000256	\N	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	SO:0000256	"A tRNA sequence that has an asparagine anticodon, and a 3' asparagine binding region." [SO:ke]	489819	\N	SOFA	sequence	1	SO	tRNA	asparaginyl_tRNA
SO:0000655	SO:0000253	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000256	"A tRNA sequence that has an asparagine anticodon, and a 3' asparagine binding region." [SO:ke]	1072254	SOFA	SOFA	sequence	2	SO	ncRNA	asparaginyl_tRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000256	"A tRNA sequence that has an asparagine anticodon, and a 3' asparagine binding region." [SO:ke]	1903287	SOFA	SOFA	sequence	3	SO	mature_transcript	asparaginyl_tRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000256	"A tRNA sequence that has an asparagine anticodon, and a 3' asparagine binding region." [SO:ke]	2927768	SOFA	SOFA	sequence	4	SO	transcript	asparaginyl_tRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000256	"A tRNA sequence that has an asparagine anticodon, and a 3' asparagine binding region." [SO:ke]	4001173	SOFA	SOFA	sequence	5	SO	gene_member_region	asparaginyl_tRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000256	"A tRNA sequence that has an asparagine anticodon, and a 3' asparagine binding region." [SO:ke]	4965791	SOFA	SOFA	sequence	6	SO	biological_region	asparaginyl_tRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000256	"A tRNA sequence that has an asparagine anticodon, and a 3' asparagine binding region." [SO:ke]	5740785	SOFA	SOFA	sequence	7	SO	region	asparaginyl_tRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000256	"A tRNA sequence that has an asparagine anticodon, and a 3' asparagine binding region." [SO:ke]	6310776	SOFA	SOFA	sequence	8	SO	sequence_feature	asparaginyl_tRNA
SO:0000257	\N	\N	"A tRNA sequence that has an aspartic acid anticodon, and a 3' aspartic acid binding region." [SO:ke]	SO:0000257	"A tRNA sequence that has an aspartic acid anticodon, and a 3' aspartic acid binding region." [SO:ke]	45221	\N	\N	sequence	0	SO	aspartyl_tRNA	aspartyl_tRNA
SO:0000253	SO:0000257	\N	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	SO:0000257	"A tRNA sequence that has an aspartic acid anticodon, and a 3' aspartic acid binding region." [SO:ke]	489820	\N	SOFA	sequence	1	SO	tRNA	aspartyl_tRNA
SO:0000655	SO:0000253	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000257	"A tRNA sequence that has an aspartic acid anticodon, and a 3' aspartic acid binding region." [SO:ke]	1072255	SOFA	SOFA	sequence	2	SO	ncRNA	aspartyl_tRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000257	"A tRNA sequence that has an aspartic acid anticodon, and a 3' aspartic acid binding region." [SO:ke]	1903288	SOFA	SOFA	sequence	3	SO	mature_transcript	aspartyl_tRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000257	"A tRNA sequence that has an aspartic acid anticodon, and a 3' aspartic acid binding region." [SO:ke]	2927769	SOFA	SOFA	sequence	4	SO	transcript	aspartyl_tRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000257	"A tRNA sequence that has an aspartic acid anticodon, and a 3' aspartic acid binding region." [SO:ke]	4001174	SOFA	SOFA	sequence	5	SO	gene_member_region	aspartyl_tRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000257	"A tRNA sequence that has an aspartic acid anticodon, and a 3' aspartic acid binding region." [SO:ke]	4965792	SOFA	SOFA	sequence	6	SO	biological_region	aspartyl_tRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000257	"A tRNA sequence that has an aspartic acid anticodon, and a 3' aspartic acid binding region." [SO:ke]	5740786	SOFA	SOFA	sequence	7	SO	region	aspartyl_tRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000257	"A tRNA sequence that has an aspartic acid anticodon, and a 3' aspartic acid binding region." [SO:ke]	6310777	SOFA	SOFA	sequence	8	SO	sequence_feature	aspartyl_tRNA
SO:0000258	\N	\N	"A tRNA sequence that has a cysteine anticodon, and a 3' cysteine binding region." [SO:ke]	SO:0000258	"A tRNA sequence that has a cysteine anticodon, and a 3' cysteine binding region." [SO:ke]	45222	\N	\N	sequence	0	SO	cysteinyl_tRNA	cysteinyl_tRNA
SO:0000253	SO:0000258	\N	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	SO:0000258	"A tRNA sequence that has a cysteine anticodon, and a 3' cysteine binding region." [SO:ke]	489821	\N	SOFA	sequence	1	SO	tRNA	cysteinyl_tRNA
SO:0000655	SO:0000253	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000258	"A tRNA sequence that has a cysteine anticodon, and a 3' cysteine binding region." [SO:ke]	1072256	SOFA	SOFA	sequence	2	SO	ncRNA	cysteinyl_tRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000258	"A tRNA sequence that has a cysteine anticodon, and a 3' cysteine binding region." [SO:ke]	1903289	SOFA	SOFA	sequence	3	SO	mature_transcript	cysteinyl_tRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000258	"A tRNA sequence that has a cysteine anticodon, and a 3' cysteine binding region." [SO:ke]	2927770	SOFA	SOFA	sequence	4	SO	transcript	cysteinyl_tRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000258	"A tRNA sequence that has a cysteine anticodon, and a 3' cysteine binding region." [SO:ke]	4001175	SOFA	SOFA	sequence	5	SO	gene_member_region	cysteinyl_tRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000258	"A tRNA sequence that has a cysteine anticodon, and a 3' cysteine binding region." [SO:ke]	4965793	SOFA	SOFA	sequence	6	SO	biological_region	cysteinyl_tRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000258	"A tRNA sequence that has a cysteine anticodon, and a 3' cysteine binding region." [SO:ke]	5740787	SOFA	SOFA	sequence	7	SO	region	cysteinyl_tRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000258	"A tRNA sequence that has a cysteine anticodon, and a 3' cysteine binding region." [SO:ke]	6310778	SOFA	SOFA	sequence	8	SO	sequence_feature	cysteinyl_tRNA
SO:0000259	\N	\N	"A tRNA sequence that has a glutamine anticodon, and a 3' glutamine binding region." [SO:ke]	SO:0000259	"A tRNA sequence that has a glutamine anticodon, and a 3' glutamine binding region." [SO:ke]	45223	\N	\N	sequence	0	SO	glutaminyl_tRNA	glutaminyl_tRNA
SO:0000253	SO:0000259	\N	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	SO:0000259	"A tRNA sequence that has a glutamine anticodon, and a 3' glutamine binding region." [SO:ke]	489822	\N	SOFA	sequence	1	SO	tRNA	glutaminyl_tRNA
SO:0000655	SO:0000253	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000259	"A tRNA sequence that has a glutamine anticodon, and a 3' glutamine binding region." [SO:ke]	1072257	SOFA	SOFA	sequence	2	SO	ncRNA	glutaminyl_tRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000259	"A tRNA sequence that has a glutamine anticodon, and a 3' glutamine binding region." [SO:ke]	1903290	SOFA	SOFA	sequence	3	SO	mature_transcript	glutaminyl_tRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000259	"A tRNA sequence that has a glutamine anticodon, and a 3' glutamine binding region." [SO:ke]	2927771	SOFA	SOFA	sequence	4	SO	transcript	glutaminyl_tRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000259	"A tRNA sequence that has a glutamine anticodon, and a 3' glutamine binding region." [SO:ke]	4001176	SOFA	SOFA	sequence	5	SO	gene_member_region	glutaminyl_tRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000259	"A tRNA sequence that has a glutamine anticodon, and a 3' glutamine binding region." [SO:ke]	4965794	SOFA	SOFA	sequence	6	SO	biological_region	glutaminyl_tRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000259	"A tRNA sequence that has a glutamine anticodon, and a 3' glutamine binding region." [SO:ke]	5740788	SOFA	SOFA	sequence	7	SO	region	glutaminyl_tRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000259	"A tRNA sequence that has a glutamine anticodon, and a 3' glutamine binding region." [SO:ke]	6310779	SOFA	SOFA	sequence	8	SO	sequence_feature	glutaminyl_tRNA
SO:0000260	\N	\N	"A tRNA sequence that has a glutamic acid anticodon, and a 3' glutamic acid binding region." [SO:ke]	SO:0000260	"A tRNA sequence that has a glutamic acid anticodon, and a 3' glutamic acid binding region." [SO:ke]	45224	\N	\N	sequence	0	SO	glutamyl_tRNA	glutamyl_tRNA
SO:0000253	SO:0000260	\N	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	SO:0000260	"A tRNA sequence that has a glutamic acid anticodon, and a 3' glutamic acid binding region." [SO:ke]	489823	\N	SOFA	sequence	1	SO	tRNA	glutamyl_tRNA
SO:0000655	SO:0000253	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000260	"A tRNA sequence that has a glutamic acid anticodon, and a 3' glutamic acid binding region." [SO:ke]	1072258	SOFA	SOFA	sequence	2	SO	ncRNA	glutamyl_tRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000260	"A tRNA sequence that has a glutamic acid anticodon, and a 3' glutamic acid binding region." [SO:ke]	1903291	SOFA	SOFA	sequence	3	SO	mature_transcript	glutamyl_tRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000260	"A tRNA sequence that has a glutamic acid anticodon, and a 3' glutamic acid binding region." [SO:ke]	2927772	SOFA	SOFA	sequence	4	SO	transcript	glutamyl_tRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000260	"A tRNA sequence that has a glutamic acid anticodon, and a 3' glutamic acid binding region." [SO:ke]	4001177	SOFA	SOFA	sequence	5	SO	gene_member_region	glutamyl_tRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000260	"A tRNA sequence that has a glutamic acid anticodon, and a 3' glutamic acid binding region." [SO:ke]	4965795	SOFA	SOFA	sequence	6	SO	biological_region	glutamyl_tRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000260	"A tRNA sequence that has a glutamic acid anticodon, and a 3' glutamic acid binding region." [SO:ke]	5740789	SOFA	SOFA	sequence	7	SO	region	glutamyl_tRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000260	"A tRNA sequence that has a glutamic acid anticodon, and a 3' glutamic acid binding region." [SO:ke]	6310780	SOFA	SOFA	sequence	8	SO	sequence_feature	glutamyl_tRNA
SO:0000261	\N	\N	"A tRNA sequence that has a glycine anticodon, and a 3' glycine binding region." [SO:ke]	SO:0000261	"A tRNA sequence that has a glycine anticodon, and a 3' glycine binding region." [SO:ke]	45225	\N	\N	sequence	0	SO	glycyl_tRNA	glycyl_tRNA
SO:0000253	SO:0000261	\N	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	SO:0000261	"A tRNA sequence that has a glycine anticodon, and a 3' glycine binding region." [SO:ke]	489824	\N	SOFA	sequence	1	SO	tRNA	glycyl_tRNA
SO:0000655	SO:0000253	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000261	"A tRNA sequence that has a glycine anticodon, and a 3' glycine binding region." [SO:ke]	1072259	SOFA	SOFA	sequence	2	SO	ncRNA	glycyl_tRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000261	"A tRNA sequence that has a glycine anticodon, and a 3' glycine binding region." [SO:ke]	1903292	SOFA	SOFA	sequence	3	SO	mature_transcript	glycyl_tRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000261	"A tRNA sequence that has a glycine anticodon, and a 3' glycine binding region." [SO:ke]	2927773	SOFA	SOFA	sequence	4	SO	transcript	glycyl_tRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000261	"A tRNA sequence that has a glycine anticodon, and a 3' glycine binding region." [SO:ke]	4001178	SOFA	SOFA	sequence	5	SO	gene_member_region	glycyl_tRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000261	"A tRNA sequence that has a glycine anticodon, and a 3' glycine binding region." [SO:ke]	4965796	SOFA	SOFA	sequence	6	SO	biological_region	glycyl_tRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000261	"A tRNA sequence that has a glycine anticodon, and a 3' glycine binding region." [SO:ke]	5740790	SOFA	SOFA	sequence	7	SO	region	glycyl_tRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000261	"A tRNA sequence that has a glycine anticodon, and a 3' glycine binding region." [SO:ke]	6310781	SOFA	SOFA	sequence	8	SO	sequence_feature	glycyl_tRNA
SO:0000262	\N	\N	"A tRNA sequence that has a histidine anticodon, and a 3' histidine binding region." [SO:ke]	SO:0000262	"A tRNA sequence that has a histidine anticodon, and a 3' histidine binding region." [SO:ke]	45226	\N	\N	sequence	0	SO	histidyl_tRNA	histidyl_tRNA
SO:0000253	SO:0000262	\N	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	SO:0000262	"A tRNA sequence that has a histidine anticodon, and a 3' histidine binding region." [SO:ke]	489825	\N	SOFA	sequence	1	SO	tRNA	histidyl_tRNA
SO:0000655	SO:0000253	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000262	"A tRNA sequence that has a histidine anticodon, and a 3' histidine binding region." [SO:ke]	1072260	SOFA	SOFA	sequence	2	SO	ncRNA	histidyl_tRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000262	"A tRNA sequence that has a histidine anticodon, and a 3' histidine binding region." [SO:ke]	1903293	SOFA	SOFA	sequence	3	SO	mature_transcript	histidyl_tRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000262	"A tRNA sequence that has a histidine anticodon, and a 3' histidine binding region." [SO:ke]	2927774	SOFA	SOFA	sequence	4	SO	transcript	histidyl_tRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000262	"A tRNA sequence that has a histidine anticodon, and a 3' histidine binding region." [SO:ke]	4001179	SOFA	SOFA	sequence	5	SO	gene_member_region	histidyl_tRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000262	"A tRNA sequence that has a histidine anticodon, and a 3' histidine binding region." [SO:ke]	4965797	SOFA	SOFA	sequence	6	SO	biological_region	histidyl_tRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000262	"A tRNA sequence that has a histidine anticodon, and a 3' histidine binding region." [SO:ke]	5740791	SOFA	SOFA	sequence	7	SO	region	histidyl_tRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000262	"A tRNA sequence that has a histidine anticodon, and a 3' histidine binding region." [SO:ke]	6310782	SOFA	SOFA	sequence	8	SO	sequence_feature	histidyl_tRNA
SO:0000263	\N	\N	"A tRNA sequence that has an isoleucine anticodon, and a 3' isoleucine binding region." [SO:ke]	SO:0000263	"A tRNA sequence that has an isoleucine anticodon, and a 3' isoleucine binding region." [SO:ke]	45227	\N	\N	sequence	0	SO	isoleucyl_tRNA	isoleucyl_tRNA
SO:0000253	SO:0000263	\N	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	SO:0000263	"A tRNA sequence that has an isoleucine anticodon, and a 3' isoleucine binding region." [SO:ke]	489826	\N	SOFA	sequence	1	SO	tRNA	isoleucyl_tRNA
SO:0000655	SO:0000253	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000263	"A tRNA sequence that has an isoleucine anticodon, and a 3' isoleucine binding region." [SO:ke]	1072261	SOFA	SOFA	sequence	2	SO	ncRNA	isoleucyl_tRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000263	"A tRNA sequence that has an isoleucine anticodon, and a 3' isoleucine binding region." [SO:ke]	1903294	SOFA	SOFA	sequence	3	SO	mature_transcript	isoleucyl_tRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000263	"A tRNA sequence that has an isoleucine anticodon, and a 3' isoleucine binding region." [SO:ke]	2927775	SOFA	SOFA	sequence	4	SO	transcript	isoleucyl_tRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000263	"A tRNA sequence that has an isoleucine anticodon, and a 3' isoleucine binding region." [SO:ke]	4001180	SOFA	SOFA	sequence	5	SO	gene_member_region	isoleucyl_tRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000263	"A tRNA sequence that has an isoleucine anticodon, and a 3' isoleucine binding region." [SO:ke]	4965798	SOFA	SOFA	sequence	6	SO	biological_region	isoleucyl_tRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000263	"A tRNA sequence that has an isoleucine anticodon, and a 3' isoleucine binding region." [SO:ke]	5740792	SOFA	SOFA	sequence	7	SO	region	isoleucyl_tRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000263	"A tRNA sequence that has an isoleucine anticodon, and a 3' isoleucine binding region." [SO:ke]	6310783	SOFA	SOFA	sequence	8	SO	sequence_feature	isoleucyl_tRNA
SO:0000264	\N	\N	"A tRNA sequence that has a leucine anticodon, and a 3' leucine binding region." [SO:ke]	SO:0000264	"A tRNA sequence that has a leucine anticodon, and a 3' leucine binding region." [SO:ke]	45228	\N	\N	sequence	0	SO	leucyl_tRNA	leucyl_tRNA
SO:0000253	SO:0000264	\N	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	SO:0000264	"A tRNA sequence that has a leucine anticodon, and a 3' leucine binding region." [SO:ke]	489827	\N	SOFA	sequence	1	SO	tRNA	leucyl_tRNA
SO:0000655	SO:0000253	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000264	"A tRNA sequence that has a leucine anticodon, and a 3' leucine binding region." [SO:ke]	1072262	SOFA	SOFA	sequence	2	SO	ncRNA	leucyl_tRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000264	"A tRNA sequence that has a leucine anticodon, and a 3' leucine binding region." [SO:ke]	1903295	SOFA	SOFA	sequence	3	SO	mature_transcript	leucyl_tRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000264	"A tRNA sequence that has a leucine anticodon, and a 3' leucine binding region." [SO:ke]	2927776	SOFA	SOFA	sequence	4	SO	transcript	leucyl_tRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000264	"A tRNA sequence that has a leucine anticodon, and a 3' leucine binding region." [SO:ke]	4001181	SOFA	SOFA	sequence	5	SO	gene_member_region	leucyl_tRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000264	"A tRNA sequence that has a leucine anticodon, and a 3' leucine binding region." [SO:ke]	4965799	SOFA	SOFA	sequence	6	SO	biological_region	leucyl_tRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000264	"A tRNA sequence that has a leucine anticodon, and a 3' leucine binding region." [SO:ke]	5740793	SOFA	SOFA	sequence	7	SO	region	leucyl_tRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000264	"A tRNA sequence that has a leucine anticodon, and a 3' leucine binding region." [SO:ke]	6310784	SOFA	SOFA	sequence	8	SO	sequence_feature	leucyl_tRNA
SO:0000265	\N	\N	"A tRNA sequence that has a lysine anticodon, and a 3' lysine binding region." [SO:ke]	SO:0000265	"A tRNA sequence that has a lysine anticodon, and a 3' lysine binding region." [SO:ke]	45229	\N	\N	sequence	0	SO	lysyl_tRNA	lysyl_tRNA
SO:0000253	SO:0000265	\N	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	SO:0000265	"A tRNA sequence that has a lysine anticodon, and a 3' lysine binding region." [SO:ke]	489828	\N	SOFA	sequence	1	SO	tRNA	lysyl_tRNA
SO:0000655	SO:0000253	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000265	"A tRNA sequence that has a lysine anticodon, and a 3' lysine binding region." [SO:ke]	1072263	SOFA	SOFA	sequence	2	SO	ncRNA	lysyl_tRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000265	"A tRNA sequence that has a lysine anticodon, and a 3' lysine binding region." [SO:ke]	1903296	SOFA	SOFA	sequence	3	SO	mature_transcript	lysyl_tRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000265	"A tRNA sequence that has a lysine anticodon, and a 3' lysine binding region." [SO:ke]	2927777	SOFA	SOFA	sequence	4	SO	transcript	lysyl_tRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000265	"A tRNA sequence that has a lysine anticodon, and a 3' lysine binding region." [SO:ke]	4001182	SOFA	SOFA	sequence	5	SO	gene_member_region	lysyl_tRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000265	"A tRNA sequence that has a lysine anticodon, and a 3' lysine binding region." [SO:ke]	4965800	SOFA	SOFA	sequence	6	SO	biological_region	lysyl_tRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000265	"A tRNA sequence that has a lysine anticodon, and a 3' lysine binding region." [SO:ke]	5740794	SOFA	SOFA	sequence	7	SO	region	lysyl_tRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000265	"A tRNA sequence that has a lysine anticodon, and a 3' lysine binding region." [SO:ke]	6310785	SOFA	SOFA	sequence	8	SO	sequence_feature	lysyl_tRNA
SO:0000266	\N	\N	"A tRNA sequence that has a methionine anticodon, and a 3' methionine binding region." [SO:ke]	SO:0000266	"A tRNA sequence that has a methionine anticodon, and a 3' methionine binding region." [SO:ke]	45230	\N	\N	sequence	0	SO	methionyl_tRNA	methionyl_tRNA
SO:0000253	SO:0000266	\N	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	SO:0000266	"A tRNA sequence that has a methionine anticodon, and a 3' methionine binding region." [SO:ke]	489829	\N	SOFA	sequence	1	SO	tRNA	methionyl_tRNA
SO:0000655	SO:0000253	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000266	"A tRNA sequence that has a methionine anticodon, and a 3' methionine binding region." [SO:ke]	1072264	SOFA	SOFA	sequence	2	SO	ncRNA	methionyl_tRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000266	"A tRNA sequence that has a methionine anticodon, and a 3' methionine binding region." [SO:ke]	1903297	SOFA	SOFA	sequence	3	SO	mature_transcript	methionyl_tRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000266	"A tRNA sequence that has a methionine anticodon, and a 3' methionine binding region." [SO:ke]	2927778	SOFA	SOFA	sequence	4	SO	transcript	methionyl_tRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000266	"A tRNA sequence that has a methionine anticodon, and a 3' methionine binding region." [SO:ke]	4001183	SOFA	SOFA	sequence	5	SO	gene_member_region	methionyl_tRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000266	"A tRNA sequence that has a methionine anticodon, and a 3' methionine binding region." [SO:ke]	4965801	SOFA	SOFA	sequence	6	SO	biological_region	methionyl_tRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000266	"A tRNA sequence that has a methionine anticodon, and a 3' methionine binding region." [SO:ke]	5740795	SOFA	SOFA	sequence	7	SO	region	methionyl_tRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000266	"A tRNA sequence that has a methionine anticodon, and a 3' methionine binding region." [SO:ke]	6310786	SOFA	SOFA	sequence	8	SO	sequence_feature	methionyl_tRNA
SO:0000267	\N	\N	"A tRNA sequence that has a phenylalanine anticodon, and a 3' phenylalanine binding region." [SO:ke]	SO:0000267	"A tRNA sequence that has a phenylalanine anticodon, and a 3' phenylalanine binding region." [SO:ke]	45231	\N	\N	sequence	0	SO	phenylalanyl_tRNA	phenylalanyl_tRNA
SO:0000253	SO:0000267	\N	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	SO:0000267	"A tRNA sequence that has a phenylalanine anticodon, and a 3' phenylalanine binding region." [SO:ke]	489830	\N	SOFA	sequence	1	SO	tRNA	phenylalanyl_tRNA
SO:0000655	SO:0000253	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000267	"A tRNA sequence that has a phenylalanine anticodon, and a 3' phenylalanine binding region." [SO:ke]	1072265	SOFA	SOFA	sequence	2	SO	ncRNA	phenylalanyl_tRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000267	"A tRNA sequence that has a phenylalanine anticodon, and a 3' phenylalanine binding region." [SO:ke]	1903298	SOFA	SOFA	sequence	3	SO	mature_transcript	phenylalanyl_tRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000267	"A tRNA sequence that has a phenylalanine anticodon, and a 3' phenylalanine binding region." [SO:ke]	2927779	SOFA	SOFA	sequence	4	SO	transcript	phenylalanyl_tRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000267	"A tRNA sequence that has a phenylalanine anticodon, and a 3' phenylalanine binding region." [SO:ke]	4001184	SOFA	SOFA	sequence	5	SO	gene_member_region	phenylalanyl_tRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000267	"A tRNA sequence that has a phenylalanine anticodon, and a 3' phenylalanine binding region." [SO:ke]	4965802	SOFA	SOFA	sequence	6	SO	biological_region	phenylalanyl_tRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000267	"A tRNA sequence that has a phenylalanine anticodon, and a 3' phenylalanine binding region." [SO:ke]	5740796	SOFA	SOFA	sequence	7	SO	region	phenylalanyl_tRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000267	"A tRNA sequence that has a phenylalanine anticodon, and a 3' phenylalanine binding region." [SO:ke]	6310787	SOFA	SOFA	sequence	8	SO	sequence_feature	phenylalanyl_tRNA
SO:0000268	\N	\N	"A tRNA sequence that has a proline anticodon, and a 3' proline binding region." [SO:ke]	SO:0000268	"A tRNA sequence that has a proline anticodon, and a 3' proline binding region." [SO:ke]	45232	\N	\N	sequence	0	SO	prolyl_tRNA	prolyl_tRNA
SO:0000253	SO:0000268	\N	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	SO:0000268	"A tRNA sequence that has a proline anticodon, and a 3' proline binding region." [SO:ke]	489831	\N	SOFA	sequence	1	SO	tRNA	prolyl_tRNA
SO:0000655	SO:0000253	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000268	"A tRNA sequence that has a proline anticodon, and a 3' proline binding region." [SO:ke]	1072266	SOFA	SOFA	sequence	2	SO	ncRNA	prolyl_tRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000268	"A tRNA sequence that has a proline anticodon, and a 3' proline binding region." [SO:ke]	1903299	SOFA	SOFA	sequence	3	SO	mature_transcript	prolyl_tRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000268	"A tRNA sequence that has a proline anticodon, and a 3' proline binding region." [SO:ke]	2927780	SOFA	SOFA	sequence	4	SO	transcript	prolyl_tRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000268	"A tRNA sequence that has a proline anticodon, and a 3' proline binding region." [SO:ke]	4001185	SOFA	SOFA	sequence	5	SO	gene_member_region	prolyl_tRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000268	"A tRNA sequence that has a proline anticodon, and a 3' proline binding region." [SO:ke]	4965803	SOFA	SOFA	sequence	6	SO	biological_region	prolyl_tRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000268	"A tRNA sequence that has a proline anticodon, and a 3' proline binding region." [SO:ke]	5740797	SOFA	SOFA	sequence	7	SO	region	prolyl_tRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000268	"A tRNA sequence that has a proline anticodon, and a 3' proline binding region." [SO:ke]	6310788	SOFA	SOFA	sequence	8	SO	sequence_feature	prolyl_tRNA
SO:0000269	\N	\N	"A tRNA sequence that has a serine anticodon, and a 3' serine binding region." [SO:ke]	SO:0000269	"A tRNA sequence that has a serine anticodon, and a 3' serine binding region." [SO:ke]	45233	\N	\N	sequence	0	SO	seryl_tRNA	seryl_tRNA
SO:0000253	SO:0000269	\N	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	SO:0000269	"A tRNA sequence that has a serine anticodon, and a 3' serine binding region." [SO:ke]	489832	\N	SOFA	sequence	1	SO	tRNA	seryl_tRNA
SO:0000655	SO:0000253	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000269	"A tRNA sequence that has a serine anticodon, and a 3' serine binding region." [SO:ke]	1072267	SOFA	SOFA	sequence	2	SO	ncRNA	seryl_tRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000269	"A tRNA sequence that has a serine anticodon, and a 3' serine binding region." [SO:ke]	1903300	SOFA	SOFA	sequence	3	SO	mature_transcript	seryl_tRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000269	"A tRNA sequence that has a serine anticodon, and a 3' serine binding region." [SO:ke]	2927781	SOFA	SOFA	sequence	4	SO	transcript	seryl_tRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000269	"A tRNA sequence that has a serine anticodon, and a 3' serine binding region." [SO:ke]	4001186	SOFA	SOFA	sequence	5	SO	gene_member_region	seryl_tRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000269	"A tRNA sequence that has a serine anticodon, and a 3' serine binding region." [SO:ke]	4965804	SOFA	SOFA	sequence	6	SO	biological_region	seryl_tRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000269	"A tRNA sequence that has a serine anticodon, and a 3' serine binding region." [SO:ke]	5740798	SOFA	SOFA	sequence	7	SO	region	seryl_tRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000269	"A tRNA sequence that has a serine anticodon, and a 3' serine binding region." [SO:ke]	6310789	SOFA	SOFA	sequence	8	SO	sequence_feature	seryl_tRNA
SO:0000270	\N	\N	"A tRNA sequence that has a threonine anticodon, and a 3' threonine binding region." [SO:ke]	SO:0000270	"A tRNA sequence that has a threonine anticodon, and a 3' threonine binding region." [SO:ke]	45234	\N	\N	sequence	0	SO	threonyl_tRNA	threonyl_tRNA
SO:0000253	SO:0000270	\N	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	SO:0000270	"A tRNA sequence that has a threonine anticodon, and a 3' threonine binding region." [SO:ke]	489833	\N	SOFA	sequence	1	SO	tRNA	threonyl_tRNA
SO:0000655	SO:0000253	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000270	"A tRNA sequence that has a threonine anticodon, and a 3' threonine binding region." [SO:ke]	1072268	SOFA	SOFA	sequence	2	SO	ncRNA	threonyl_tRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000270	"A tRNA sequence that has a threonine anticodon, and a 3' threonine binding region." [SO:ke]	1903301	SOFA	SOFA	sequence	3	SO	mature_transcript	threonyl_tRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000270	"A tRNA sequence that has a threonine anticodon, and a 3' threonine binding region." [SO:ke]	2927782	SOFA	SOFA	sequence	4	SO	transcript	threonyl_tRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000270	"A tRNA sequence that has a threonine anticodon, and a 3' threonine binding region." [SO:ke]	4001187	SOFA	SOFA	sequence	5	SO	gene_member_region	threonyl_tRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000270	"A tRNA sequence that has a threonine anticodon, and a 3' threonine binding region." [SO:ke]	4965805	SOFA	SOFA	sequence	6	SO	biological_region	threonyl_tRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000270	"A tRNA sequence that has a threonine anticodon, and a 3' threonine binding region." [SO:ke]	5740799	SOFA	SOFA	sequence	7	SO	region	threonyl_tRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000270	"A tRNA sequence that has a threonine anticodon, and a 3' threonine binding region." [SO:ke]	6310790	SOFA	SOFA	sequence	8	SO	sequence_feature	threonyl_tRNA
SO:0000271	\N	\N	"A tRNA sequence that has a tryptophan anticodon, and a 3' tryptophan binding region." [SO:ke]	SO:0000271	"A tRNA sequence that has a tryptophan anticodon, and a 3' tryptophan binding region." [SO:ke]	45235	\N	\N	sequence	0	SO	tryptophanyl_tRNA	tryptophanyl_tRNA
SO:0000253	SO:0000271	\N	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	SO:0000271	"A tRNA sequence that has a tryptophan anticodon, and a 3' tryptophan binding region." [SO:ke]	489834	\N	SOFA	sequence	1	SO	tRNA	tryptophanyl_tRNA
SO:0000655	SO:0000253	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000271	"A tRNA sequence that has a tryptophan anticodon, and a 3' tryptophan binding region." [SO:ke]	1072269	SOFA	SOFA	sequence	2	SO	ncRNA	tryptophanyl_tRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000271	"A tRNA sequence that has a tryptophan anticodon, and a 3' tryptophan binding region." [SO:ke]	1903302	SOFA	SOFA	sequence	3	SO	mature_transcript	tryptophanyl_tRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000271	"A tRNA sequence that has a tryptophan anticodon, and a 3' tryptophan binding region." [SO:ke]	2927783	SOFA	SOFA	sequence	4	SO	transcript	tryptophanyl_tRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000271	"A tRNA sequence that has a tryptophan anticodon, and a 3' tryptophan binding region." [SO:ke]	4001188	SOFA	SOFA	sequence	5	SO	gene_member_region	tryptophanyl_tRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000271	"A tRNA sequence that has a tryptophan anticodon, and a 3' tryptophan binding region." [SO:ke]	4965806	SOFA	SOFA	sequence	6	SO	biological_region	tryptophanyl_tRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000271	"A tRNA sequence that has a tryptophan anticodon, and a 3' tryptophan binding region." [SO:ke]	5740800	SOFA	SOFA	sequence	7	SO	region	tryptophanyl_tRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000271	"A tRNA sequence that has a tryptophan anticodon, and a 3' tryptophan binding region." [SO:ke]	6310791	SOFA	SOFA	sequence	8	SO	sequence_feature	tryptophanyl_tRNA
SO:0000272	\N	\N	"A tRNA sequence that has a tyrosine anticodon, and a 3' tyrosine binding region." [SO:ke]	SO:0000272	"A tRNA sequence that has a tyrosine anticodon, and a 3' tyrosine binding region." [SO:ke]	45236	\N	\N	sequence	0	SO	tyrosyl_tRNA	tyrosyl_tRNA
SO:0000253	SO:0000272	\N	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	SO:0000272	"A tRNA sequence that has a tyrosine anticodon, and a 3' tyrosine binding region." [SO:ke]	489835	\N	SOFA	sequence	1	SO	tRNA	tyrosyl_tRNA
SO:0000655	SO:0000253	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000272	"A tRNA sequence that has a tyrosine anticodon, and a 3' tyrosine binding region." [SO:ke]	1072270	SOFA	SOFA	sequence	2	SO	ncRNA	tyrosyl_tRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000272	"A tRNA sequence that has a tyrosine anticodon, and a 3' tyrosine binding region." [SO:ke]	1903303	SOFA	SOFA	sequence	3	SO	mature_transcript	tyrosyl_tRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000272	"A tRNA sequence that has a tyrosine anticodon, and a 3' tyrosine binding region." [SO:ke]	2927784	SOFA	SOFA	sequence	4	SO	transcript	tyrosyl_tRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000272	"A tRNA sequence that has a tyrosine anticodon, and a 3' tyrosine binding region." [SO:ke]	4001189	SOFA	SOFA	sequence	5	SO	gene_member_region	tyrosyl_tRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000272	"A tRNA sequence that has a tyrosine anticodon, and a 3' tyrosine binding region." [SO:ke]	4965807	SOFA	SOFA	sequence	6	SO	biological_region	tyrosyl_tRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000272	"A tRNA sequence that has a tyrosine anticodon, and a 3' tyrosine binding region." [SO:ke]	5740801	SOFA	SOFA	sequence	7	SO	region	tyrosyl_tRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000272	"A tRNA sequence that has a tyrosine anticodon, and a 3' tyrosine binding region." [SO:ke]	6310792	SOFA	SOFA	sequence	8	SO	sequence_feature	tyrosyl_tRNA
SO:0000273	\N	\N	"A tRNA sequence that has a valine anticodon, and a 3' valine binding region." [SO:ke]	SO:0000273	"A tRNA sequence that has a valine anticodon, and a 3' valine binding region." [SO:ke]	45237	\N	\N	sequence	0	SO	valyl_tRNA	valyl_tRNA
SO:0000253	SO:0000273	\N	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	SO:0000273	"A tRNA sequence that has a valine anticodon, and a 3' valine binding region." [SO:ke]	489836	\N	SOFA	sequence	1	SO	tRNA	valyl_tRNA
SO:0000655	SO:0000253	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000273	"A tRNA sequence that has a valine anticodon, and a 3' valine binding region." [SO:ke]	1072271	SOFA	SOFA	sequence	2	SO	ncRNA	valyl_tRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000273	"A tRNA sequence that has a valine anticodon, and a 3' valine binding region." [SO:ke]	1903304	SOFA	SOFA	sequence	3	SO	mature_transcript	valyl_tRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000273	"A tRNA sequence that has a valine anticodon, and a 3' valine binding region." [SO:ke]	2927785	SOFA	SOFA	sequence	4	SO	transcript	valyl_tRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000273	"A tRNA sequence that has a valine anticodon, and a 3' valine binding region." [SO:ke]	4001190	SOFA	SOFA	sequence	5	SO	gene_member_region	valyl_tRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000273	"A tRNA sequence that has a valine anticodon, and a 3' valine binding region." [SO:ke]	4965808	SOFA	SOFA	sequence	6	SO	biological_region	valyl_tRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000273	"A tRNA sequence that has a valine anticodon, and a 3' valine binding region." [SO:ke]	5740802	SOFA	SOFA	sequence	7	SO	region	valyl_tRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000273	"A tRNA sequence that has a valine anticodon, and a 3' valine binding region." [SO:ke]	6310793	SOFA	SOFA	sequence	8	SO	sequence_feature	valyl_tRNA
SO:0000274	\N	SOFA	"A small nuclear RNA molecule involved in pre-mRNA splicing and processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:11733745, WB:ems]	SO:0000274	"A small nuclear RNA molecule involved in pre-mRNA splicing and processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:11733745, WB:ems]	45238	\N	SOFA	sequence	0	SO	snRNA	snRNA
CHEBI:33697	\N	SOFA	"RNA is a chemical compound which are naturally occurring polyribonucleotides." []	SO:0000274	"A small nuclear RNA molecule involved in pre-mRNA splicing and processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:11733745, WB:ems]	193887	\N	\N	sequence	0	SO	RNA	snRNA
SO:0000655	SO:0000274	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000274	"A small nuclear RNA molecule involved in pre-mRNA splicing and processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:11733745, WB:ems]	489837	SOFA	SOFA	sequence	1	SO	ncRNA	snRNA
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000274	"A small nuclear RNA molecule involved in pre-mRNA splicing and processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:11733745, WB:ems]	1072272	SOFA	SOFA	sequence	2	SO	mature_transcript	snRNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000274	"A small nuclear RNA molecule involved in pre-mRNA splicing and processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:11733745, WB:ems]	1903305	SOFA	SOFA	sequence	3	SO	transcript	snRNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000274	"A small nuclear RNA molecule involved in pre-mRNA splicing and processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:11733745, WB:ems]	2927786	SOFA	SOFA	sequence	4	SO	gene_member_region	snRNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000274	"A small nuclear RNA molecule involved in pre-mRNA splicing and processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:11733745, WB:ems]	4001191	SOFA	SOFA	sequence	5	SO	biological_region	snRNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000274	"A small nuclear RNA molecule involved in pre-mRNA splicing and processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:11733745, WB:ems]	4965809	SOFA	SOFA	sequence	6	SO	region	snRNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000274	"A small nuclear RNA molecule involved in pre-mRNA splicing and processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:11733745, WB:ems]	5740803	SOFA	SOFA	sequence	7	SO	sequence_feature	snRNA
SO:0000275	\N	SOFA	"A snoRNA (small nucleolar RNA) is any one of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA." [GOC:kgc]	SO:0000275	"A snoRNA (small nucleolar RNA) is any one of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA." [GOC:kgc]	45239	\N	SOFA	sequence	0	SO	snoRNA	snoRNA
SO:0000655	SO:0000275	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000275	"A snoRNA (small nucleolar RNA) is any one of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA." [GOC:kgc]	489838	SOFA	SOFA	sequence	1	SO	ncRNA	snoRNA
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000275	"A snoRNA (small nucleolar RNA) is any one of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA." [GOC:kgc]	1072273	SOFA	SOFA	sequence	2	SO	mature_transcript	snoRNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000275	"A snoRNA (small nucleolar RNA) is any one of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA." [GOC:kgc]	1903306	SOFA	SOFA	sequence	3	SO	transcript	snoRNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000275	"A snoRNA (small nucleolar RNA) is any one of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA." [GOC:kgc]	2927787	SOFA	SOFA	sequence	4	SO	gene_member_region	snoRNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000275	"A snoRNA (small nucleolar RNA) is any one of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA." [GOC:kgc]	4001192	SOFA	SOFA	sequence	5	SO	biological_region	snoRNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000275	"A snoRNA (small nucleolar RNA) is any one of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA." [GOC:kgc]	4965810	SOFA	SOFA	sequence	6	SO	region	snoRNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000275	"A snoRNA (small nucleolar RNA) is any one of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA." [GOC:kgc]	5740804	SOFA	SOFA	sequence	7	SO	sequence_feature	snoRNA
SO:0000276	\N	SOFA	"Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene (or the product of other non coding RNA genes. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (usually via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors." [PMID:11081512, PMID:12592000]	SO:0000276	"Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene (or the product of other non coding RNA genes. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (usually via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors." [PMID:11081512, PMID:12592000]	45240	\N	SOFA	sequence	0	SO	miRNA	miRNA
SO:0000370	SO:0000276	SOFA	"A non-coding RNA less than 200 nucleotides long, usually with a specific secondary structure, that acts to regulate gene expression. These include short ncRNAs such as piRNA, miRNA and siRNAs (among others)." [PMID:28541282, PomBase:al, SO:ma]	SO:0000276	"Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene (or the product of other non coding RNA genes. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (usually via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors." [PMID:11081512, PMID:12592000]	489839	SOFA	SOFA	sequence	1	SO	small_regulatory_ncRNA	miRNA
SO:0001244	SO:0000276	SOFA	"The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin structure." [SO:ke]	SO:0000276	"Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene (or the product of other non coding RNA genes. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (usually via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors." [PMID:11081512, PMID:12592000]	489840	SOFA	\N	sequence	1	SO	pre_miRNA	miRNA
SO:0000655	SO:0000370	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000276	"Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene (or the product of other non coding RNA genes. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (usually via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors." [PMID:11081512, PMID:12592000]	1072274	SOFA	SOFA	sequence	2	SO	ncRNA	miRNA
SO:0001243	SO:0001244	SOFA	"A part of an miRNA primary_transcript." [SO:ke]	SO:0000276	"Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene (or the product of other non coding RNA genes. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (usually via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors." [PMID:11081512, PMID:12592000]	1072275	\N	\N	sequence	2	SO	miRNA_primary_transcript_region	miRNA
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000276	"Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene (or the product of other non coding RNA genes. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (usually via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors." [PMID:11081512, PMID:12592000]	1903307	SOFA	SOFA	sequence	3	SO	mature_transcript	miRNA
SO:0000835	SO:0001243	SOFA	"A part of a primary transcript." [SO:ke]	SO:0000276	"Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene (or the product of other non coding RNA genes. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (usually via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors." [PMID:11081512, PMID:12592000]	1903308	\N	SOFA	sequence	3	SO	primary_transcript_region	miRNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000276	"Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene (or the product of other non coding RNA genes. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (usually via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors." [PMID:11081512, PMID:12592000]	2927788	SOFA	SOFA	sequence	4	SO	transcript	miRNA
SO:0000185	SO:0000835	SOFA	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000276	"Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene (or the product of other non coding RNA genes. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (usually via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors." [PMID:11081512, PMID:12592000]	2927789	SOFA	SOFA	sequence	4	SO	primary_transcript	miRNA
SO:0000833	SO:0000835	SOFA	"A region of a transcript." [SO:ke]	SO:0000276	"Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene (or the product of other non coding RNA genes. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (usually via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors." [PMID:11081512, PMID:12592000]	2927790	SOFA	SOFA	sequence	4	SO	transcript_region	miRNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000276	"Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene (or the product of other non coding RNA genes. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (usually via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors." [PMID:11081512, PMID:12592000]	4965812	SOFA	SOFA	sequence	6	SO	gene_member_region	miRNA
SO:0000673	SO:0000185	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000276	"Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene (or the product of other non coding RNA genes. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (usually via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors." [PMID:11081512, PMID:12592000]	4001194	SOFA	SOFA	sequence	5	SO	transcript	miRNA
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000276	"Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene (or the product of other non coding RNA genes. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (usually via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors." [PMID:11081512, PMID:12592000]	4001195	SOFA	SOFA	sequence	5	SO	transcript	miRNA
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000276	"Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene (or the product of other non coding RNA genes. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (usually via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors." [PMID:11081512, PMID:12592000]	4001196	SOFA	SOFA	sequence	5	SO	biological_region	miRNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000276	"Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene (or the product of other non coding RNA genes. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (usually via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors." [PMID:11081512, PMID:12592000]	5407379	SOFA	SOFA	sequence	7	SO	biological_region	miRNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000276	"Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene (or the product of other non coding RNA genes. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (usually via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors." [PMID:11081512, PMID:12592000]	6146608	SOFA	SOFA	sequence	8	SO	region	miRNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000276	"Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene (or the product of other non coding RNA genes. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (usually via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors." [PMID:11081512, PMID:12592000]	6550243	SOFA	SOFA	sequence	9	SO	sequence_feature	miRNA
SO:0000277	\N	\N	"An attribute describing a sequence that is bound by another molecule." [SO:ke]	SO:0000277	"An attribute describing a sequence that is bound by another molecule." [SO:ke]	45241	\N	\N	sequence	0	SO	bound_by_factor	bound_by_factor
SO:0000733	SO:0000277	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000277	"An attribute describing a sequence that is bound by another molecule." [SO:ke]	489841	\N	\N	sequence	1	SO	feature_attribute	bound_by_factor
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000277	"An attribute describing a sequence that is bound by another molecule." [SO:ke]	1072276	\N	\N	sequence	2	SO	sequence_attribute	bound_by_factor
SO:0000278	\N	\N	"A transcript that is bound by a nucleic acid." [SO:xp]	SO:0000278	"A transcript that is bound by a nucleic acid." [SO:xp]	45242	\N	\N	sequence	0	SO	transcript_bound_by_nucleic_acid	transcript_bound_by_nucleic_acid
SO:0000673	SO:0000278	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000278	"A transcript that is bound by a nucleic acid." [SO:xp]	489842	\N	SOFA	sequence	1	SO	transcript	transcript_bound_by_nucleic_acid
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000278	"A transcript that is bound by a nucleic acid." [SO:xp]	1072277	SOFA	SOFA	sequence	2	SO	gene_member_region	transcript_bound_by_nucleic_acid
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000278	"A transcript that is bound by a nucleic acid." [SO:xp]	1903309	SOFA	SOFA	sequence	3	SO	biological_region	transcript_bound_by_nucleic_acid
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000278	"A transcript that is bound by a nucleic acid." [SO:xp]	2927791	SOFA	SOFA	sequence	4	SO	region	transcript_bound_by_nucleic_acid
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000278	"A transcript that is bound by a nucleic acid." [SO:xp]	4001197	SOFA	SOFA	sequence	5	SO	sequence_feature	transcript_bound_by_nucleic_acid
SO:0000279	\N	\N	"A transcript that is bound by a protein." [SO:xp]	SO:0000279	"A transcript that is bound by a protein." [SO:xp]	45243	\N	\N	sequence	0	SO	transcript_bound_by_protein	transcript_bound_by_protein
SO:0000673	SO:0000279	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000279	"A transcript that is bound by a protein." [SO:xp]	489843	\N	SOFA	sequence	1	SO	transcript	transcript_bound_by_protein
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000279	"A transcript that is bound by a protein." [SO:xp]	1072278	SOFA	SOFA	sequence	2	SO	gene_member_region	transcript_bound_by_protein
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000279	"A transcript that is bound by a protein." [SO:xp]	1903310	SOFA	SOFA	sequence	3	SO	biological_region	transcript_bound_by_protein
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000279	"A transcript that is bound by a protein." [SO:xp]	2927792	SOFA	SOFA	sequence	4	SO	region	transcript_bound_by_protein
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000279	"A transcript that is bound by a protein." [SO:xp]	4001198	SOFA	SOFA	sequence	5	SO	sequence_feature	transcript_bound_by_protein
SO:0000280	\N	\N	"A gene that is engineered." [SO:xp]	SO:0000280	"A gene that is engineered." [SO:xp]	45244	\N	\N	sequence	0	SO	engineered_gene	engineered_gene
SO:0000704	SO:0000280	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000280	"A gene that is engineered." [SO:xp]	489844	\N	SOFA	sequence	1	SO	gene	engineered_gene
SO:0000804	SO:0000280	\N	"A region that is engineered." [SO:xp]	SO:0000280	"A gene that is engineered." [SO:xp]	489845	\N	\N	sequence	1	SO	engineered_region	engineered_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000280	"A gene that is engineered." [SO:xp]	1072279	SOFA	SOFA	sequence	2	SO	biological_region	engineered_gene
SO:0001409	SO:0000804	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000280	"A gene that is engineered." [SO:xp]	1072280	\N	SOFA	sequence	2	SO	biomaterial_region	engineered_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000280	"A gene that is engineered." [SO:xp]	1903311	SOFA	SOFA	sequence	3	SO	region	engineered_gene
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000280	"A gene that is engineered." [SO:xp]	1903312	SOFA	SOFA	sequence	3	SO	region	engineered_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000280	"A gene that is engineered." [SO:xp]	2927793	SOFA	SOFA	sequence	4	SO	sequence_feature	engineered_gene
SO:0000281	\N	\N	"A gene that is engineered and foreign." [SO:xp]	SO:0000281	"A gene that is engineered and foreign." [SO:xp]	45245	\N	\N	sequence	0	SO	engineered_foreign_gene	engineered_foreign_gene
SO:0000280	SO:0000281	\N	"A gene that is engineered." [SO:xp]	SO:0000281	"A gene that is engineered and foreign." [SO:xp]	489846	\N	\N	sequence	1	SO	engineered_gene	engineered_foreign_gene
SO:0000285	SO:0000281	\N	"A gene that is foreign." [SO:xp]	SO:0000281	"A gene that is engineered and foreign." [SO:xp]	489847	\N	\N	sequence	1	SO	foreign_gene	engineered_foreign_gene
SO:0000805	SO:0000281	\N	"A region that is engineered and foreign." [SO:xp]	SO:0000281	"A gene that is engineered and foreign." [SO:xp]	489848	\N	\N	sequence	1	SO	engineered_foreign_region	engineered_foreign_gene
SO:0000704	SO:0000280	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000281	"A gene that is engineered and foreign." [SO:xp]	1072281	\N	SOFA	sequence	2	SO	gene	engineered_foreign_gene
SO:0000804	SO:0000280	\N	"A region that is engineered." [SO:xp]	SO:0000281	"A gene that is engineered and foreign." [SO:xp]	1072282	\N	\N	sequence	2	SO	engineered_region	engineered_foreign_gene
SO:0000704	SO:0000285	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000281	"A gene that is engineered and foreign." [SO:xp]	1072283	\N	SOFA	sequence	2	SO	gene	engineered_foreign_gene
SO:0000804	SO:0000805	\N	"A region that is engineered." [SO:xp]	SO:0000281	"A gene that is engineered and foreign." [SO:xp]	1072284	\N	\N	sequence	2	SO	engineered_region	engineered_foreign_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000281	"A gene that is engineered and foreign." [SO:xp]	1903313	SOFA	SOFA	sequence	3	SO	biological_region	engineered_foreign_gene
SO:0001409	SO:0000804	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000281	"A gene that is engineered and foreign." [SO:xp]	1903314	\N	SOFA	sequence	3	SO	biomaterial_region	engineered_foreign_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000281	"A gene that is engineered and foreign." [SO:xp]	2927794	SOFA	SOFA	sequence	4	SO	region	engineered_foreign_gene
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000281	"A gene that is engineered and foreign." [SO:xp]	2927795	SOFA	SOFA	sequence	4	SO	region	engineered_foreign_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000281	"A gene that is engineered and foreign." [SO:xp]	4001199	SOFA	SOFA	sequence	5	SO	sequence_feature	engineered_foreign_gene
SO:0000282	\N	\N	"An mRNA with a minus 1 frameshift." [SO:xp]	SO:0000282	"An mRNA with a minus 1 frameshift." [SO:xp]	45246	\N	\N	sequence	0	SO	mRNA_with_minus_1_frameshift	mRNA_with_minus_1_frameshift
SO:0000108	SO:0000282	\N	"An mRNA with a frameshift." [SO:xp]	SO:0000282	"An mRNA with a minus 1 frameshift." [SO:xp]	489849	\N	\N	sequence	1	SO	mRNA_with_frameshift	mRNA_with_minus_1_frameshift
SO:0000234	SO:0000108	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000282	"An mRNA with a minus 1 frameshift." [SO:xp]	1072285	\N	SOFA	sequence	2	SO	mRNA	mRNA_with_minus_1_frameshift
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000282	"An mRNA with a minus 1 frameshift." [SO:xp]	1903315	SOFA	SOFA	sequence	3	SO	mature_transcript	mRNA_with_minus_1_frameshift
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000282	"An mRNA with a minus 1 frameshift." [SO:xp]	2927796	SOFA	SOFA	sequence	4	SO	transcript	mRNA_with_minus_1_frameshift
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000282	"An mRNA with a minus 1 frameshift." [SO:xp]	4001200	SOFA	SOFA	sequence	5	SO	gene_member_region	mRNA_with_minus_1_frameshift
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000282	"An mRNA with a minus 1 frameshift." [SO:xp]	4965814	SOFA	SOFA	sequence	6	SO	biological_region	mRNA_with_minus_1_frameshift
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000282	"An mRNA with a minus 1 frameshift." [SO:xp]	5740807	SOFA	SOFA	sequence	7	SO	region	mRNA_with_minus_1_frameshift
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000282	"An mRNA with a minus 1 frameshift." [SO:xp]	6310794	SOFA	SOFA	sequence	8	SO	sequence_feature	mRNA_with_minus_1_frameshift
SO:0000283	\N	\N	"A transposable_element that is engineered and foreign." [SO:xp]	SO:0000283	"A transposable_element that is engineered and foreign." [SO:xp]	45247	\N	\N	sequence	0	SO	engineered_foreign_transposable_element_gene	engineered_foreign_transposable_element_gene
SO:0000111	SO:0000283	\N	"A gene encoded within a transposable element. For example gag, int, env and pol are the transposable element genes of the TY element in yeast." [SO:ke]	SO:0000283	"A transposable_element that is engineered and foreign." [SO:xp]	489850	\N	\N	sequence	1	SO	transposable_element_gene	engineered_foreign_transposable_element_gene
SO:0000281	SO:0000283	\N	"A gene that is engineered and foreign." [SO:xp]	SO:0000283	"A transposable_element that is engineered and foreign." [SO:xp]	489851	\N	\N	sequence	1	SO	engineered_foreign_gene	engineered_foreign_transposable_element_gene
SO:0000101	SO:0000111	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000283	"A transposable_element that is engineered and foreign." [SO:xp]	1072286	\N	SOFA	sequence	2	SO	transposable_element	engineered_foreign_transposable_element_gene
SO:0000704	SO:0000111	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000283	"A transposable_element that is engineered and foreign." [SO:xp]	1072287	\N	SOFA	sequence	2	SO	gene	engineered_foreign_transposable_element_gene
SO:0000280	SO:0000281	\N	"A gene that is engineered." [SO:xp]	SO:0000283	"A transposable_element that is engineered and foreign." [SO:xp]	1072288	\N	\N	sequence	2	SO	engineered_gene	engineered_foreign_transposable_element_gene
SO:0000285	SO:0000281	\N	"A gene that is foreign." [SO:xp]	SO:0000283	"A transposable_element that is engineered and foreign." [SO:xp]	1072289	\N	\N	sequence	2	SO	foreign_gene	engineered_foreign_transposable_element_gene
SO:0000805	SO:0000281	\N	"A region that is engineered and foreign." [SO:xp]	SO:0000283	"A transposable_element that is engineered and foreign." [SO:xp]	1072290	\N	\N	sequence	2	SO	engineered_foreign_region	engineered_foreign_transposable_element_gene
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000283	"A transposable_element that is engineered and foreign." [SO:xp]	1903316	SOFA	SOFA	sequence	3	SO	integrated_mobile_genetic_element	engineered_foreign_transposable_element_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000283	"A transposable_element that is engineered and foreign." [SO:xp]	2927799	SOFA	SOFA	sequence	4	SO	biological_region	engineered_foreign_transposable_element_gene
SO:0000704	SO:0000280	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000283	"A transposable_element that is engineered and foreign." [SO:xp]	1903318	\N	SOFA	sequence	3	SO	gene	engineered_foreign_transposable_element_gene
SO:0000804	SO:0000280	\N	"A region that is engineered." [SO:xp]	SO:0000283	"A transposable_element that is engineered and foreign." [SO:xp]	1903319	\N	\N	sequence	3	SO	engineered_region	engineered_foreign_transposable_element_gene
SO:0000704	SO:0000285	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000283	"A transposable_element that is engineered and foreign." [SO:xp]	1903320	\N	SOFA	sequence	3	SO	gene	engineered_foreign_transposable_element_gene
SO:0000804	SO:0000805	\N	"A region that is engineered." [SO:xp]	SO:0000283	"A transposable_element that is engineered and foreign." [SO:xp]	1903321	\N	\N	sequence	3	SO	engineered_region	engineered_foreign_transposable_element_gene
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000283	"A transposable_element that is engineered and foreign." [SO:xp]	2927797	SOFA	SOFA	sequence	4	SO	mobile_genetic_element	engineered_foreign_transposable_element_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000283	"A transposable_element that is engineered and foreign." [SO:xp]	4965815	SOFA	SOFA	sequence	6	SO	region	engineered_foreign_transposable_element_gene
SO:0001409	SO:0000804	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000283	"A transposable_element that is engineered and foreign." [SO:xp]	2927800	\N	SOFA	sequence	4	SO	biomaterial_region	engineered_foreign_transposable_element_gene
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000283	"A transposable_element that is engineered and foreign." [SO:xp]	4001201	SOFA	SOFA	sequence	5	SO	biological_region	engineered_foreign_transposable_element_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000283	"A transposable_element that is engineered and foreign." [SO:xp]	5180669	SOFA	SOFA	sequence	7	SO	sequence_feature	engineered_foreign_transposable_element_gene
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000283	"A transposable_element that is engineered and foreign." [SO:xp]	4001203	SOFA	SOFA	sequence	5	SO	region	engineered_foreign_transposable_element_gene
SO:0000285	\N	\N	"A gene that is foreign." [SO:xp]	SO:0000285	"A gene that is foreign." [SO:xp]	45248	\N	\N	sequence	0	SO	foreign_gene	foreign_gene
SO:0000704	SO:0000285	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000285	"A gene that is foreign." [SO:xp]	489852	\N	SOFA	sequence	1	SO	gene	foreign_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000285	"A gene that is foreign." [SO:xp]	1072291	SOFA	SOFA	sequence	2	SO	biological_region	foreign_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000285	"A gene that is foreign." [SO:xp]	1903322	SOFA	SOFA	sequence	3	SO	region	foreign_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000285	"A gene that is foreign." [SO:xp]	2927801	SOFA	SOFA	sequence	4	SO	sequence_feature	foreign_gene
SO:0000286	\N	\N	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000286	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	45249	\N	\N	sequence	0	SO	long_terminal_repeat	long_terminal_repeat
SO:0000186	SO:0000286	\N	"A retrotransposon flanked by long terminal repeat sequences." [SO:ke]	SO:0000286	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	489853	\N	\N	sequence	1	SO	LTR_retrotransposon	long_terminal_repeat
SO:0000657	SO:0000286	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000286	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	489854	\N	SOFA	sequence	1	SO	repeat_region	long_terminal_repeat
SO:0000180	SO:0000186	\N	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	SO:0000286	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072292	\N	\N	sequence	2	SO	retrotransposon	long_terminal_repeat
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000286	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072293	SOFA	SOFA	sequence	2	SO	biological_region	long_terminal_repeat
SO:0000101	SO:0000180	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000286	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903323	\N	SOFA	sequence	3	SO	transposable_element	long_terminal_repeat
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000286	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	5740808	SOFA	SOFA	sequence	7	SO	region	long_terminal_repeat
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000286	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2927802	SOFA	SOFA	sequence	4	SO	integrated_mobile_genetic_element	long_terminal_repeat
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000286	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	5817329	SOFA	SOFA	sequence	8	SO	sequence_feature	long_terminal_repeat
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000286	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4001204	SOFA	SOFA	sequence	5	SO	mobile_genetic_element	long_terminal_repeat
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000286	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4965816	SOFA	SOFA	sequence	6	SO	biological_region	long_terminal_repeat
SO:0000287	\N	\N	"A gene that is a fusion." [SO:xp]	SO:0000287	"A gene that is a fusion." [SO:xp]	45250	\N	\N	sequence	0	SO	fusion_gene	fusion_gene
SO:0000704	SO:0000287	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000287	"A gene that is a fusion." [SO:xp]	489855	\N	SOFA	sequence	1	SO	gene	fusion_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000287	"A gene that is a fusion." [SO:xp]	1072294	SOFA	SOFA	sequence	2	SO	biological_region	fusion_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000287	"A gene that is a fusion." [SO:xp]	1903325	SOFA	SOFA	sequence	3	SO	region	fusion_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000287	"A gene that is a fusion." [SO:xp]	2927804	SOFA	SOFA	sequence	4	SO	sequence_feature	fusion_gene
SO:0000288	\N	\N	"A fusion gene that is engineered." [SO:xp]	SO:0000288	"A fusion gene that is engineered." [SO:xp]	45251	\N	\N	sequence	0	SO	engineered_fusion_gene	engineered_fusion_gene
SO:0000280	SO:0000288	\N	"A gene that is engineered." [SO:xp]	SO:0000288	"A fusion gene that is engineered." [SO:xp]	489856	\N	\N	sequence	1	SO	engineered_gene	engineered_fusion_gene
SO:0000287	SO:0000288	\N	"A gene that is a fusion." [SO:xp]	SO:0000288	"A fusion gene that is engineered." [SO:xp]	489857	\N	\N	sequence	1	SO	fusion_gene	engineered_fusion_gene
SO:0000704	SO:0000280	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000288	"A fusion gene that is engineered." [SO:xp]	1072295	\N	SOFA	sequence	2	SO	gene	engineered_fusion_gene
SO:0000804	SO:0000280	\N	"A region that is engineered." [SO:xp]	SO:0000288	"A fusion gene that is engineered." [SO:xp]	1072296	\N	\N	sequence	2	SO	engineered_region	engineered_fusion_gene
SO:0000704	SO:0000287	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000288	"A fusion gene that is engineered." [SO:xp]	1072297	\N	SOFA	sequence	2	SO	gene	engineered_fusion_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000288	"A fusion gene that is engineered." [SO:xp]	1903326	SOFA	SOFA	sequence	3	SO	biological_region	engineered_fusion_gene
SO:0001409	SO:0000804	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000288	"A fusion gene that is engineered." [SO:xp]	1903327	\N	SOFA	sequence	3	SO	biomaterial_region	engineered_fusion_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000288	"A fusion gene that is engineered." [SO:xp]	2927805	SOFA	SOFA	sequence	4	SO	region	engineered_fusion_gene
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000288	"A fusion gene that is engineered." [SO:xp]	2927806	SOFA	SOFA	sequence	4	SO	region	engineered_fusion_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000288	"A fusion gene that is engineered." [SO:xp]	4001205	SOFA	SOFA	sequence	5	SO	sequence_feature	engineered_fusion_gene
SO:0000289	\N	SOFA	"A repeat_region containing repeat_units of 2 to 10 bp repeated in tandem." [http://www.informatics.jax.org/silver/glossary.shtml, NCBI:th]	SO:0000289	"A repeat_region containing repeat_units of 2 to 10 bp repeated in tandem." [http://www.informatics.jax.org/silver/glossary.shtml, NCBI:th]	45252	\N	SOFA	sequence	0	SO	microsatellite	microsatellite
SO:0000005	SO:0000289	SOFA	"The many tandem repeats (identical or related) of a short basic repeating unit; many have a base composition or other property different from the genome average that allows them to be separated from the bulk (main band) genomic DNA." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000289	"A repeat_region containing repeat_units of 2 to 10 bp repeated in tandem." [http://www.informatics.jax.org/silver/glossary.shtml, NCBI:th]	489858	SOFA	SOFA	sequence	1	SO	satellite_DNA	microsatellite
SO:0000705	SO:0000005	SOFA	"Two or more adjacent copies of a region (of length greater than 1)." [SO:ke]	SO:0000289	"A repeat_region containing repeat_units of 2 to 10 bp repeated in tandem." [http://www.informatics.jax.org/silver/glossary.shtml, NCBI:th]	1072298	SOFA	SOFA	sequence	2	SO	tandem_repeat	microsatellite
SO:0000657	SO:0000705	SOFA	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000289	"A repeat_region containing repeat_units of 2 to 10 bp repeated in tandem." [http://www.informatics.jax.org/silver/glossary.shtml, NCBI:th]	1903328	SOFA	SOFA	sequence	3	SO	repeat_region	microsatellite
SO:0001411	SO:0000657	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000289	"A repeat_region containing repeat_units of 2 to 10 bp repeated in tandem." [http://www.informatics.jax.org/silver/glossary.shtml, NCBI:th]	2927807	SOFA	SOFA	sequence	4	SO	biological_region	microsatellite
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000289	"A repeat_region containing repeat_units of 2 to 10 bp repeated in tandem." [http://www.informatics.jax.org/silver/glossary.shtml, NCBI:th]	4001206	SOFA	SOFA	sequence	5	SO	region	microsatellite
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000289	"A repeat_region containing repeat_units of 2 to 10 bp repeated in tandem." [http://www.informatics.jax.org/silver/glossary.shtml, NCBI:th]	4965817	SOFA	SOFA	sequence	6	SO	sequence_feature	microsatellite
SO:0000290	\N	\N	"" []	SO:0000290	"" []	45253	\N	\N	sequence	0	SO	dinucleotide_repeat_microsatellite_feature	dinucleotide_repeat_microsatellite_feature
SO:0000289	SO:0000290	\N	"A repeat_region containing repeat_units of 2 to 10 bp repeated in tandem." [http://www.informatics.jax.org/silver/glossary.shtml, NCBI:th]	SO:0000290	"" []	489859	\N	SOFA	sequence	1	SO	microsatellite	dinucleotide_repeat_microsatellite_feature
SO:0000005	SO:0000289	\N	"The many tandem repeats (identical or related) of a short basic repeating unit; many have a base composition or other property different from the genome average that allows them to be separated from the bulk (main band) genomic DNA." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000290	"" []	1072299	SOFA	SOFA	sequence	2	SO	satellite_DNA	dinucleotide_repeat_microsatellite_feature
SO:0000705	SO:0000005	\N	"Two or more adjacent copies of a region (of length greater than 1)." [SO:ke]	SO:0000290	"" []	1903329	SOFA	SOFA	sequence	3	SO	tandem_repeat	dinucleotide_repeat_microsatellite_feature
SO:0000657	SO:0000705	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000290	"" []	2927808	SOFA	SOFA	sequence	4	SO	repeat_region	dinucleotide_repeat_microsatellite_feature
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000290	"" []	4001207	SOFA	SOFA	sequence	5	SO	biological_region	dinucleotide_repeat_microsatellite_feature
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000290	"" []	4965818	SOFA	SOFA	sequence	6	SO	region	dinucleotide_repeat_microsatellite_feature
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000290	"" []	5740809	SOFA	SOFA	sequence	7	SO	sequence_feature	dinucleotide_repeat_microsatellite_feature
SO:0000291	\N	\N	"" []	SO:0000291	"" []	45254	\N	\N	sequence	0	SO	trinucleotide_repeat_microsatellite_feature	trinucleotide_repeat_microsatellite_feature
SO:0000289	SO:0000291	\N	"A repeat_region containing repeat_units of 2 to 10 bp repeated in tandem." [http://www.informatics.jax.org/silver/glossary.shtml, NCBI:th]	SO:0000291	"" []	489860	\N	SOFA	sequence	1	SO	microsatellite	trinucleotide_repeat_microsatellite_feature
SO:0000005	SO:0000289	\N	"The many tandem repeats (identical or related) of a short basic repeating unit; many have a base composition or other property different from the genome average that allows them to be separated from the bulk (main band) genomic DNA." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000291	"" []	1072300	SOFA	SOFA	sequence	2	SO	satellite_DNA	trinucleotide_repeat_microsatellite_feature
SO:0000705	SO:0000005	\N	"Two or more adjacent copies of a region (of length greater than 1)." [SO:ke]	SO:0000291	"" []	1903330	SOFA	SOFA	sequence	3	SO	tandem_repeat	trinucleotide_repeat_microsatellite_feature
SO:0000657	SO:0000705	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000291	"" []	2927809	SOFA	SOFA	sequence	4	SO	repeat_region	trinucleotide_repeat_microsatellite_feature
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000291	"" []	4001208	SOFA	SOFA	sequence	5	SO	biological_region	trinucleotide_repeat_microsatellite_feature
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000291	"" []	4965819	SOFA	SOFA	sequence	6	SO	region	trinucleotide_repeat_microsatellite_feature
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000291	"" []	5740810	SOFA	SOFA	sequence	7	SO	sequence_feature	trinucleotide_repeat_microsatellite_feature
SO:0000293	\N	\N	"A repetitive element that is engineered and foreign." [SO:xp]	SO:0000293	"A repetitive element that is engineered and foreign." [SO:xp]	45255	\N	\N	sequence	0	SO	engineered_foreign_repetitive_element	engineered_foreign_repetitive_element
SO:0000657	SO:0000293	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000293	"A repetitive element that is engineered and foreign." [SO:xp]	489861	\N	SOFA	sequence	1	SO	repeat_region	engineered_foreign_repetitive_element
SO:0000805	SO:0000293	\N	"A region that is engineered and foreign." [SO:xp]	SO:0000293	"A repetitive element that is engineered and foreign." [SO:xp]	489862	\N	\N	sequence	1	SO	engineered_foreign_region	engineered_foreign_repetitive_element
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000293	"A repetitive element that is engineered and foreign." [SO:xp]	1072301	SOFA	SOFA	sequence	2	SO	biological_region	engineered_foreign_repetitive_element
SO:0000804	SO:0000805	\N	"A region that is engineered." [SO:xp]	SO:0000293	"A repetitive element that is engineered and foreign." [SO:xp]	1072302	\N	\N	sequence	2	SO	engineered_region	engineered_foreign_repetitive_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000293	"A repetitive element that is engineered and foreign." [SO:xp]	1903331	SOFA	SOFA	sequence	3	SO	region	engineered_foreign_repetitive_element
SO:0001409	SO:0000804	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000293	"A repetitive element that is engineered and foreign." [SO:xp]	1903332	\N	SOFA	sequence	3	SO	biomaterial_region	engineered_foreign_repetitive_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000293	"A repetitive element that is engineered and foreign." [SO:xp]	4001209	SOFA	SOFA	sequence	5	SO	sequence_feature	engineered_foreign_repetitive_element
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000293	"A repetitive element that is engineered and foreign." [SO:xp]	2927811	SOFA	SOFA	sequence	4	SO	region	engineered_foreign_repetitive_element
SO:0000294	\N	SOFA	"The sequence is complementarily repeated on the opposite strand. It is a palindrome, and it may, or may not be hyphenated. Examples: GCTGATCAGC, or GCTGA-----TCAGC." [SO:ke]	SO:0000294	"The sequence is complementarily repeated on the opposite strand. It is a palindrome, and it may, or may not be hyphenated. Examples: GCTGATCAGC, or GCTGA-----TCAGC." [SO:ke]	45256	\N	SOFA	sequence	0	SO	inverted_repeat	inverted_repeat
SO:0000657	SO:0000294	SOFA	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000294	"The sequence is complementarily repeated on the opposite strand. It is a palindrome, and it may, or may not be hyphenated. Examples: GCTGATCAGC, or GCTGA-----TCAGC." [SO:ke]	489863	SOFA	SOFA	sequence	1	SO	repeat_region	inverted_repeat
SO:0001411	SO:0000657	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000294	"The sequence is complementarily repeated on the opposite strand. It is a palindrome, and it may, or may not be hyphenated. Examples: GCTGATCAGC, or GCTGA-----TCAGC." [SO:ke]	1072303	SOFA	SOFA	sequence	2	SO	biological_region	inverted_repeat
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000294	"The sequence is complementarily repeated on the opposite strand. It is a palindrome, and it may, or may not be hyphenated. Examples: GCTGATCAGC, or GCTGA-----TCAGC." [SO:ke]	1903333	SOFA	SOFA	sequence	3	SO	region	inverted_repeat
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000294	"The sequence is complementarily repeated on the opposite strand. It is a palindrome, and it may, or may not be hyphenated. Examples: GCTGATCAGC, or GCTGA-----TCAGC." [SO:ke]	2927812	SOFA	SOFA	sequence	4	SO	sequence_feature	inverted_repeat
SO:0000295	\N	\N	"A type of spliceosomal intron spliced by the U12 spliceosome, that includes U11, U12, U4atac/U6atac and U5 snRNAs." [PMID:9428511]	SO:0000295	"A type of spliceosomal intron spliced by the U12 spliceosome, that includes U11, U12, U4atac/U6atac and U5 snRNAs." [PMID:9428511]	45257	\N	\N	sequence	0	SO	U12_intron	U12_intron
SO:0000662	SO:0000295	\N	"An intron which is spliced by the spliceosome." [SO:ke]	SO:0000295	"A type of spliceosomal intron spliced by the U12 spliceosome, that includes U11, U12, U4atac/U6atac and U5 snRNAs." [PMID:9428511]	489864	\N	SOFA	sequence	1	SO	spliceosomal_intron	U12_intron
SO:0000188	SO:0000662	\N	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000295	"A type of spliceosomal intron spliced by the U12 spliceosome, that includes U11, U12, U4atac/U6atac and U5 snRNAs." [PMID:9428511]	1072304	SOFA	SOFA	sequence	2	SO	intron	U12_intron
SO:0000835	SO:0000188	\N	"A part of a primary transcript." [SO:ke]	SO:0000295	"A type of spliceosomal intron spliced by the U12 spliceosome, that includes U11, U12, U4atac/U6atac and U5 snRNAs." [PMID:9428511]	1903334	SOFA	SOFA	sequence	3	SO	primary_transcript_region	U12_intron
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000295	"A type of spliceosomal intron spliced by the U12 spliceosome, that includes U11, U12, U4atac/U6atac and U5 snRNAs." [PMID:9428511]	2927813	SOFA	SOFA	sequence	4	SO	primary_transcript	U12_intron
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0000295	"A type of spliceosomal intron spliced by the U12 spliceosome, that includes U11, U12, U4atac/U6atac and U5 snRNAs." [PMID:9428511]	2927814	SOFA	SOFA	sequence	4	SO	transcript_region	U12_intron
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000295	"A type of spliceosomal intron spliced by the U12 spliceosome, that includes U11, U12, U4atac/U6atac and U5 snRNAs." [PMID:9428511]	4001210	SOFA	SOFA	sequence	5	SO	transcript	U12_intron
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000295	"A type of spliceosomal intron spliced by the U12 spliceosome, that includes U11, U12, U4atac/U6atac and U5 snRNAs." [PMID:9428511]	4001211	SOFA	SOFA	sequence	5	SO	transcript	U12_intron
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000295	"A type of spliceosomal intron spliced by the U12 spliceosome, that includes U11, U12, U4atac/U6atac and U5 snRNAs." [PMID:9428511]	4001212	SOFA	SOFA	sequence	5	SO	biological_region	U12_intron
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000295	"A type of spliceosomal intron spliced by the U12 spliceosome, that includes U11, U12, U4atac/U6atac and U5 snRNAs." [PMID:9428511]	4965820	SOFA	SOFA	sequence	6	SO	gene_member_region	U12_intron
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000295	"A type of spliceosomal intron spliced by the U12 spliceosome, that includes U11, U12, U4atac/U6atac and U5 snRNAs." [PMID:9428511]	6310795	SOFA	SOFA	sequence	8	SO	region	U12_intron
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000295	"A type of spliceosomal intron spliced by the U12 spliceosome, that includes U11, U12, U4atac/U6atac and U5 snRNAs." [PMID:9428511]	5740811	SOFA	SOFA	sequence	7	SO	biological_region	U12_intron
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000295	"A type of spliceosomal intron spliced by the U12 spliceosome, that includes U11, U12, U4atac/U6atac and U5 snRNAs." [PMID:9428511]	6550244	SOFA	SOFA	sequence	9	SO	sequence_feature	U12_intron
SO:0000296	\N	SOFA	"The origin of replication; starting site for duplication of a nucleic acid molecule to give two identical copies." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000296	"The origin of replication; starting site for duplication of a nucleic acid molecule to give two identical copies." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	45258	\N	SOFA	sequence	0	SO	origin_of_replication	origin_of_replication
SO:0001235	SO:0000296	SOFA	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000296	"The origin of replication; starting site for duplication of a nucleic acid molecule to give two identical copies." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	489865	SOFA	SOFA	sequence	1	SO	replicon	origin_of_replication
SO:0001411	SO:0000296	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000296	"The origin of replication; starting site for duplication of a nucleic acid molecule to give two identical copies." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	489866	SOFA	SOFA	sequence	1	SO	biological_region	origin_of_replication
SO:0001411	SO:0001235	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000296	"The origin of replication; starting site for duplication of a nucleic acid molecule to give two identical copies." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072305	SOFA	SOFA	sequence	2	SO	biological_region	origin_of_replication
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000296	"The origin of replication; starting site for duplication of a nucleic acid molecule to give two identical copies." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903335	SOFA	SOFA	sequence	3	SO	region	origin_of_replication
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000296	"The origin of replication; starting site for duplication of a nucleic acid molecule to give two identical copies." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2018217	SOFA	SOFA	sequence	4	SO	sequence_feature	origin_of_replication
SO:0000297	\N	\N	"Displacement loop; a region within mitochondrial DNA in which a short stretch of RNA is paired with one strand of DNA, displacing the original partner DNA strand in this region; also used to describe the displacement of a region of one strand of duplex DNA by a single stranded invader in the reaction catalyzed by RecA protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000297	"Displacement loop; a region within mitochondrial DNA in which a short stretch of RNA is paired with one strand of DNA, displacing the original partner DNA strand in this region; also used to describe the displacement of a region of one strand of duplex DNA by a single stranded invader in the reaction catalyzed by RecA protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	45259	\N	\N	sequence	0	SO	D_loop	D_loop
SO:0000296	SO:0000297	\N	"The origin of replication; starting site for duplication of a nucleic acid molecule to give two identical copies." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000297	"Displacement loop; a region within mitochondrial DNA in which a short stretch of RNA is paired with one strand of DNA, displacing the original partner DNA strand in this region; also used to describe the displacement of a region of one strand of duplex DNA by a single stranded invader in the reaction catalyzed by RecA protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	489867	\N	SOFA	sequence	1	SO	origin_of_replication	D_loop
SO:0001235	SO:0000296	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000297	"Displacement loop; a region within mitochondrial DNA in which a short stretch of RNA is paired with one strand of DNA, displacing the original partner DNA strand in this region; also used to describe the displacement of a region of one strand of duplex DNA by a single stranded invader in the reaction catalyzed by RecA protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072307	SOFA	SOFA	sequence	2	SO	replicon	D_loop
SO:0001411	SO:0000296	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000297	"Displacement loop; a region within mitochondrial DNA in which a short stretch of RNA is paired with one strand of DNA, displacing the original partner DNA strand in this region; also used to describe the displacement of a region of one strand of duplex DNA by a single stranded invader in the reaction catalyzed by RecA protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072308	SOFA	SOFA	sequence	2	SO	biological_region	D_loop
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000297	"Displacement loop; a region within mitochondrial DNA in which a short stretch of RNA is paired with one strand of DNA, displacing the original partner DNA strand in this region; also used to describe the displacement of a region of one strand of duplex DNA by a single stranded invader in the reaction catalyzed by RecA protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903337	SOFA	SOFA	sequence	3	SO	biological_region	D_loop
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000297	"Displacement loop; a region within mitochondrial DNA in which a short stretch of RNA is paired with one strand of DNA, displacing the original partner DNA strand in this region; also used to describe the displacement of a region of one strand of duplex DNA by a single stranded invader in the reaction catalyzed by RecA protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2927815	SOFA	SOFA	sequence	4	SO	region	D_loop
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000297	"Displacement loop; a region within mitochondrial DNA in which a short stretch of RNA is paired with one strand of DNA, displacing the original partner DNA strand in this region; also used to describe the displacement of a region of one strand of duplex DNA by a single stranded invader in the reaction catalyzed by RecA protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	3173866	SOFA	SOFA	sequence	5	SO	sequence_feature	D_loop
SO:0000298	\N	\N	"" []	SO:0000298	"" []	45260	\N	\N	sequence	0	SO	recombination_feature	recombination_feature
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000298	"" []	489868	\N	SOFA	sequence	1	SO	biological_region	recombination_feature
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000298	"" []	1072309	SOFA	SOFA	sequence	2	SO	region	recombination_feature
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000298	"" []	1903339	SOFA	SOFA	sequence	3	SO	sequence_feature	recombination_feature
SO:0000299	\N	\N	"" []	SO:0000299	"" []	45261	\N	\N	sequence	0	SO	specific_recombination_site	specific_recombination_site
SO:0000669	SO:0000299	\N	"" []	SO:0000299	"" []	489869	\N	\N	sequence	1	SO	sequence_rearrangement_feature	specific_recombination_site
SO:0000298	SO:0000669	\N	"" []	SO:0000299	"" []	1072310	\N	\N	sequence	2	SO	recombination_feature	specific_recombination_site
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000299	"" []	1903340	\N	SOFA	sequence	3	SO	biological_region	specific_recombination_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000299	"" []	2927817	SOFA	SOFA	sequence	4	SO	region	specific_recombination_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000299	"" []	4001213	SOFA	SOFA	sequence	5	SO	sequence_feature	specific_recombination_site
SO:0000300	\N	\N	"" []	SO:0000300	"" []	45262	\N	\N	sequence	0	SO	recombination_feature_of_rearranged_gene	recombination_feature_of_rearranged_gene
SO:0000299	SO:0000300	\N	"" []	SO:0000300	"" []	489870	\N	\N	sequence	1	SO	specific_recombination_site	recombination_feature_of_rearranged_gene
SO:0000669	SO:0000299	\N	"" []	SO:0000300	"" []	1072311	\N	\N	sequence	2	SO	sequence_rearrangement_feature	recombination_feature_of_rearranged_gene
SO:0000298	SO:0000669	\N	"" []	SO:0000300	"" []	1903341	\N	\N	sequence	3	SO	recombination_feature	recombination_feature_of_rearranged_gene
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000300	"" []	2927818	\N	SOFA	sequence	4	SO	biological_region	recombination_feature_of_rearranged_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000300	"" []	4001214	SOFA	SOFA	sequence	5	SO	region	recombination_feature_of_rearranged_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000300	"" []	4965822	SOFA	SOFA	sequence	6	SO	sequence_feature	recombination_feature_of_rearranged_gene
SO:0000301	\N	\N	"" []	SO:0000301	"" []	45263	\N	\N	sequence	0	SO	vertebrate_immune_system_gene_recombination_feature	vertebrate_immune_system_gene_recombination_feature
SO:0000300	SO:0000301	\N	"" []	SO:0000301	"" []	489871	\N	\N	sequence	1	SO	recombination_feature_of_rearranged_gene	vertebrate_immune_system_gene_recombination_feature
SO:0000299	SO:0000300	\N	"" []	SO:0000301	"" []	1072312	\N	\N	sequence	2	SO	specific_recombination_site	vertebrate_immune_system_gene_recombination_feature
SO:0000669	SO:0000299	\N	"" []	SO:0000301	"" []	1903342	\N	\N	sequence	3	SO	sequence_rearrangement_feature	vertebrate_immune_system_gene_recombination_feature
SO:0000298	SO:0000669	\N	"" []	SO:0000301	"" []	2927819	\N	\N	sequence	4	SO	recombination_feature	vertebrate_immune_system_gene_recombination_feature
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000301	"" []	4001215	\N	SOFA	sequence	5	SO	biological_region	vertebrate_immune_system_gene_recombination_feature
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000301	"" []	4965823	SOFA	SOFA	sequence	6	SO	region	vertebrate_immune_system_gene_recombination_feature
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000301	"" []	5740813	SOFA	SOFA	sequence	7	SO	sequence_feature	vertebrate_immune_system_gene_recombination_feature
SO:0000302	\N	\N	"Recombination signal including J-heptamer, J-spacer and J-nonamer in 5' of J-region of a J-gene or J-sequence." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000302	"Recombination signal including J-heptamer, J-spacer and J-nonamer in 5' of J-region of a J-gene or J-sequence." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45264	\N	\N	sequence	0	SO	J_gene_recombination_feature	J_gene_recombination_feature
SO:0000939	SO:0000302	\N	"" []	SO:0000302	"Recombination signal including J-heptamer, J-spacer and J-nonamer in 5' of J-region of a J-gene or J-sequence." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	489872	\N	\N	sequence	1	SO	vertebrate_immune_system_gene_recombination_signal_feature	J_gene_recombination_feature
SO:0000301	SO:0000939	\N	"" []	SO:0000302	"Recombination signal including J-heptamer, J-spacer and J-nonamer in 5' of J-region of a J-gene or J-sequence." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072313	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	J_gene_recombination_feature
SO:0000300	SO:0000301	\N	"" []	SO:0000302	"Recombination signal including J-heptamer, J-spacer and J-nonamer in 5' of J-region of a J-gene or J-sequence." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903343	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	J_gene_recombination_feature
SO:0000299	SO:0000300	\N	"" []	SO:0000302	"Recombination signal including J-heptamer, J-spacer and J-nonamer in 5' of J-region of a J-gene or J-sequence." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2927820	\N	\N	sequence	4	SO	specific_recombination_site	J_gene_recombination_feature
SO:0000669	SO:0000299	\N	"" []	SO:0000302	"Recombination signal including J-heptamer, J-spacer and J-nonamer in 5' of J-region of a J-gene or J-sequence." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001216	\N	\N	sequence	5	SO	sequence_rearrangement_feature	J_gene_recombination_feature
SO:0000298	SO:0000669	\N	"" []	SO:0000302	"Recombination signal including J-heptamer, J-spacer and J-nonamer in 5' of J-region of a J-gene or J-sequence." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4965824	\N	\N	sequence	6	SO	recombination_feature	J_gene_recombination_feature
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000302	"Recombination signal including J-heptamer, J-spacer and J-nonamer in 5' of J-region of a J-gene or J-sequence." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740814	\N	SOFA	sequence	7	SO	biological_region	J_gene_recombination_feature
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000302	"Recombination signal including J-heptamer, J-spacer and J-nonamer in 5' of J-region of a J-gene or J-sequence." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310796	SOFA	SOFA	sequence	8	SO	region	J_gene_recombination_feature
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000302	"Recombination signal including J-heptamer, J-spacer and J-nonamer in 5' of J-region of a J-gene or J-sequence." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699223	SOFA	SOFA	sequence	9	SO	sequence_feature	J_gene_recombination_feature
SO:0000303	\N	SOFA	"Part of the primary transcript that is clipped off during processing." [SO:ke]	SO:0000303	"Part of the primary transcript that is clipped off during processing." [SO:ke]	45265	\N	SOFA	sequence	0	SO	clip	clip
SO:0000835	SO:0000303	SOFA	"A part of a primary transcript." [SO:ke]	SO:0000303	"Part of the primary transcript that is clipped off during processing." [SO:ke]	489873	SOFA	SOFA	sequence	1	SO	primary_transcript_region	clip
SO:0000185	SO:0000835	SOFA	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000303	"Part of the primary transcript that is clipped off during processing." [SO:ke]	1072314	SOFA	SOFA	sequence	2	SO	primary_transcript	clip
SO:0000833	SO:0000835	SOFA	"A region of a transcript." [SO:ke]	SO:0000303	"Part of the primary transcript that is clipped off during processing." [SO:ke]	1072315	SOFA	SOFA	sequence	2	SO	transcript_region	clip
SO:0000673	SO:0000185	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000303	"Part of the primary transcript that is clipped off during processing." [SO:ke]	1903344	SOFA	SOFA	sequence	3	SO	transcript	clip
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000303	"Part of the primary transcript that is clipped off during processing." [SO:ke]	1903345	SOFA	SOFA	sequence	3	SO	transcript	clip
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000303	"Part of the primary transcript that is clipped off during processing." [SO:ke]	1903346	SOFA	SOFA	sequence	3	SO	biological_region	clip
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000303	"Part of the primary transcript that is clipped off during processing." [SO:ke]	2927821	SOFA	SOFA	sequence	4	SO	gene_member_region	clip
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000303	"Part of the primary transcript that is clipped off during processing." [SO:ke]	4965825	SOFA	SOFA	sequence	6	SO	region	clip
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000303	"Part of the primary transcript that is clipped off during processing." [SO:ke]	4001217	SOFA	SOFA	sequence	5	SO	biological_region	clip
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000303	"Part of the primary transcript that is clipped off during processing." [SO:ke]	5180670	SOFA	SOFA	sequence	7	SO	sequence_feature	clip
SO:0000305	\N	SOFA	"A modified nucleotide, i.e. a nucleotide other than A, T, C. G." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000305	"A modified nucleotide, i.e. a nucleotide other than A, T, C. G." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	45266	\N	SOFA	sequence	0	SO	modified_DNA_base	modified_DNA_base
SO:0001236	SO:0000305	SOFA	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0000305	"A modified nucleotide, i.e. a nucleotide other than A, T, C. G." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	489874	SOFA	SOFA	sequence	1	SO	base	modified_DNA_base
SO:0001720	SO:0000305	SOFA	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0000305	"A modified nucleotide, i.e. a nucleotide other than A, T, C. G." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	489875	SOFA	SOFA	sequence	1	SO	epigenetically_modified_region	modified_DNA_base
SO:0001411	SO:0001236	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000305	"A modified nucleotide, i.e. a nucleotide other than A, T, C. G." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072316	SOFA	SOFA	sequence	2	SO	biological_region	modified_DNA_base
SO:0001411	SO:0001720	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000305	"A modified nucleotide, i.e. a nucleotide other than A, T, C. G." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072317	SOFA	SOFA	sequence	2	SO	biological_region	modified_DNA_base
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000305	"A modified nucleotide, i.e. a nucleotide other than A, T, C. G." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903347	SOFA	SOFA	sequence	3	SO	region	modified_DNA_base
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000305	"A modified nucleotide, i.e. a nucleotide other than A, T, C. G." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2927823	SOFA	SOFA	sequence	4	SO	sequence_feature	modified_DNA_base
SO:0000306	\N	SOFA	"A nucleotide modified by methylation." [SO:ke]	SO:0000306	"A nucleotide modified by methylation." [SO:ke]	45267	\N	SOFA	sequence	0	SO	methylated_DNA_base_feature	methylated_DNA_base_feature
SO:0000305	SO:0000306	SOFA	"A modified nucleotide, i.e. a nucleotide other than A, T, C. G." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000306	"A nucleotide modified by methylation." [SO:ke]	489876	SOFA	SOFA	sequence	1	SO	modified_DNA_base	methylated_DNA_base_feature
SO:0001236	SO:0000305	SOFA	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0000306	"A nucleotide modified by methylation." [SO:ke]	1072318	SOFA	SOFA	sequence	2	SO	base	methylated_DNA_base_feature
SO:0001720	SO:0000305	SOFA	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0000306	"A nucleotide modified by methylation." [SO:ke]	1072319	SOFA	SOFA	sequence	2	SO	epigenetically_modified_region	methylated_DNA_base_feature
SO:0001411	SO:0001236	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000306	"A nucleotide modified by methylation." [SO:ke]	1903348	SOFA	SOFA	sequence	3	SO	biological_region	methylated_DNA_base_feature
SO:0001411	SO:0001720	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000306	"A nucleotide modified by methylation." [SO:ke]	1903349	SOFA	SOFA	sequence	3	SO	biological_region	methylated_DNA_base_feature
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000306	"A nucleotide modified by methylation." [SO:ke]	2927824	SOFA	SOFA	sequence	4	SO	region	methylated_DNA_base_feature
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000306	"A nucleotide modified by methylation." [SO:ke]	4001219	SOFA	SOFA	sequence	5	SO	sequence_feature	methylated_DNA_base_feature
SO:0000307	\N	SOFA	"Regions of a few hundred to a few thousand bases in vertebrate genomes that are relatively GC and CpG rich; they are typically unmethylated and often found near the 5' ends of genes." [SO:rd]	SO:0000307	"Regions of a few hundred to a few thousand bases in vertebrate genomes that are relatively GC and CpG rich; they are typically unmethylated and often found near the 5' ends of genes." [SO:rd]	45268	\N	SOFA	sequence	0	SO	CpG_island	CpG_island
SO:0001411	SO:0000307	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000307	"Regions of a few hundred to a few thousand bases in vertebrate genomes that are relatively GC and CpG rich; they are typically unmethylated and often found near the 5' ends of genes." [SO:rd]	489877	SOFA	SOFA	sequence	1	SO	biological_region	CpG_island
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000307	"Regions of a few hundred to a few thousand bases in vertebrate genomes that are relatively GC and CpG rich; they are typically unmethylated and often found near the 5' ends of genes." [SO:rd]	1072320	SOFA	SOFA	sequence	2	SO	region	CpG_island
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000307	"Regions of a few hundred to a few thousand bases in vertebrate genomes that are relatively GC and CpG rich; they are typically unmethylated and often found near the 5' ends of genes." [SO:rd]	1903350	SOFA	SOFA	sequence	3	SO	sequence_feature	CpG_island
SO:0000312	\N	\N	"Attribute to describe a feature that has been experimentally verified." [SO:ke]	SO:0000312	"Attribute to describe a feature that has been experimentally verified." [SO:ke]	45269	\N	\N	sequence	0	SO	experimentally_determined	experimentally_determined
SO:0000789	SO:0000312	\N	"An attribute to describe a feature that has been proven." [SO:ke]	SO:0000312	"Attribute to describe a feature that has been experimentally verified." [SO:ke]	489878	\N	\N	sequence	1	SO	validated	experimentally_determined
SO:0000905	SO:0000789	\N	"An attribute describing the status of a feature, based on the available evidence." [SO:ke]	SO:0000312	"Attribute to describe a feature that has been experimentally verified." [SO:ke]	1072321	\N	\N	sequence	2	SO	status	experimentally_determined
SO:0000733	SO:0000905	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000312	"Attribute to describe a feature that has been experimentally verified." [SO:ke]	1903351	\N	\N	sequence	3	SO	feature_attribute	experimentally_determined
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000312	"Attribute to describe a feature that has been experimentally verified." [SO:ke]	2927825	\N	\N	sequence	4	SO	sequence_attribute	experimentally_determined
SO:0000313	\N	\N	"A double-helical region of nucleic acid formed by base-pairing between adjacent (inverted) complementary sequences." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000313	"A double-helical region of nucleic acid formed by base-pairing between adjacent (inverted) complementary sequences." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	45270	\N	\N	sequence	0	SO	stem_loop	stem_loop
SO:0000122	SO:0000313	\N	"A folded RNA sequence." [SO:ke]	SO:0000313	"A double-helical region of nucleic acid formed by base-pairing between adjacent (inverted) complementary sequences." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	489879	\N	\N	sequence	1	SO	RNA_sequence_secondary_structure	stem_loop
SO:0000002	SO:0000122	\N	"A folded sequence." [SO:ke]	SO:0000313	"A double-helical region of nucleic acid formed by base-pairing between adjacent (inverted) complementary sequences." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072322	\N	\N	sequence	2	SO	sequence_secondary_structure	stem_loop
SO:0001411	SO:0000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000313	"A double-helical region of nucleic acid formed by base-pairing between adjacent (inverted) complementary sequences." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903352	\N	SOFA	sequence	3	SO	biological_region	stem_loop
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000313	"A double-helical region of nucleic acid formed by base-pairing between adjacent (inverted) complementary sequences." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2927826	SOFA	SOFA	sequence	4	SO	region	stem_loop
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000313	"A double-helical region of nucleic acid formed by base-pairing between adjacent (inverted) complementary sequences." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4001220	SOFA	SOFA	sequence	5	SO	sequence_feature	stem_loop
SO:0000314	\N	SOFA	"A repeat where the same sequence is repeated in the same direction. Example: GCTGA-followed by-GCTGA." [SO:ke]	SO:0000314	"A repeat where the same sequence is repeated in the same direction. Example: GCTGA-followed by-GCTGA." [SO:ke]	45271	\N	SOFA	sequence	0	SO	direct_repeat	direct_repeat
SO:0000657	SO:0000314	SOFA	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000314	"A repeat where the same sequence is repeated in the same direction. Example: GCTGA-followed by-GCTGA." [SO:ke]	489880	SOFA	SOFA	sequence	1	SO	repeat_region	direct_repeat
SO:0001411	SO:0000657	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000314	"A repeat where the same sequence is repeated in the same direction. Example: GCTGA-followed by-GCTGA." [SO:ke]	1072323	SOFA	SOFA	sequence	2	SO	biological_region	direct_repeat
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000314	"A repeat where the same sequence is repeated in the same direction. Example: GCTGA-followed by-GCTGA." [SO:ke]	1903353	SOFA	SOFA	sequence	3	SO	region	direct_repeat
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000314	"A repeat where the same sequence is repeated in the same direction. Example: GCTGA-followed by-GCTGA." [SO:ke]	2927827	SOFA	SOFA	sequence	4	SO	sequence_feature	direct_repeat
SO:0000315	\N	SOFA	"The first base where RNA polymerase begins to synthesize the RNA transcript." [SO:ke]	SO:0000315	"The first base where RNA polymerase begins to synthesize the RNA transcript." [SO:ke]	45272	\N	SOFA	sequence	0	SO	TSS	TSS
SO:0000835	SO:0000315	SOFA	"A part of a primary transcript." [SO:ke]	SO:0000315	"The first base where RNA polymerase begins to synthesize the RNA transcript." [SO:ke]	489881	SOFA	SOFA	sequence	1	SO	primary_transcript_region	TSS
SO:0000185	SO:0000835	SOFA	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000315	"The first base where RNA polymerase begins to synthesize the RNA transcript." [SO:ke]	1072324	SOFA	SOFA	sequence	2	SO	primary_transcript	TSS
SO:0000833	SO:0000835	SOFA	"A region of a transcript." [SO:ke]	SO:0000315	"The first base where RNA polymerase begins to synthesize the RNA transcript." [SO:ke]	1072325	SOFA	SOFA	sequence	2	SO	transcript_region	TSS
SO:0000673	SO:0000185	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000315	"The first base where RNA polymerase begins to synthesize the RNA transcript." [SO:ke]	1903354	SOFA	SOFA	sequence	3	SO	transcript	TSS
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000315	"The first base where RNA polymerase begins to synthesize the RNA transcript." [SO:ke]	1903355	SOFA	SOFA	sequence	3	SO	transcript	TSS
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000315	"The first base where RNA polymerase begins to synthesize the RNA transcript." [SO:ke]	1903356	SOFA	SOFA	sequence	3	SO	biological_region	TSS
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000315	"The first base where RNA polymerase begins to synthesize the RNA transcript." [SO:ke]	2927828	SOFA	SOFA	sequence	4	SO	gene_member_region	TSS
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000315	"The first base where RNA polymerase begins to synthesize the RNA transcript." [SO:ke]	4965826	SOFA	SOFA	sequence	6	SO	region	TSS
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000315	"The first base where RNA polymerase begins to synthesize the RNA transcript." [SO:ke]	4001221	SOFA	SOFA	sequence	5	SO	biological_region	TSS
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000315	"The first base where RNA polymerase begins to synthesize the RNA transcript." [SO:ke]	5180671	SOFA	SOFA	sequence	7	SO	sequence_feature	TSS
SO:0000316	\N	SOFA	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	SO:0000316	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	45273	\N	SOFA	sequence	0	SO	CDS	CDS
SO:0000836	SO:0000316	SOFA	"A region of an mRNA." [SO:cb]	SO:0000316	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	489882	SOFA	SOFA	sequence	1	SO	mRNA_region	CDS
SO:0000234	SO:0000836	SOFA	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000316	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	1072326	SOFA	SOFA	sequence	2	SO	mRNA	CDS
SO:0000834	SO:0000836	SOFA	"A region of a mature transcript." [SO:ke]	SO:0000316	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	1072327	SOFA	SOFA	sequence	2	SO	mature_transcript_region	CDS
SO:0000233	SO:0000234	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000316	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	1903357	SOFA	SOFA	sequence	3	SO	mature_transcript	CDS
SO:0000833	SO:0000834	SOFA	"A region of a transcript." [SO:ke]	SO:0000316	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	1903358	SOFA	SOFA	sequence	3	SO	transcript_region	CDS
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000316	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	2927830	SOFA	SOFA	sequence	4	SO	transcript	CDS
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000316	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	2927831	SOFA	SOFA	sequence	4	SO	transcript	CDS
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000316	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	2927832	SOFA	SOFA	sequence	4	SO	biological_region	CDS
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000316	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	4001223	SOFA	SOFA	sequence	5	SO	gene_member_region	CDS
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000316	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	5740815	SOFA	SOFA	sequence	7	SO	region	CDS
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000316	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	4965827	SOFA	SOFA	sequence	6	SO	biological_region	CDS
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000316	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	5996372	SOFA	SOFA	sequence	8	SO	sequence_feature	CDS
SO:0000317	\N	\N	"Complementary DNA; A piece of DNA copied from an mRNA and spliced into a vector for propagation in a suitable host." [http://seqcore.brcf.med.umich.edu/doc/educ/dnapr/mbglossary/mbgloss.html]	SO:0000317	"Complementary DNA; A piece of DNA copied from an mRNA and spliced into a vector for propagation in a suitable host." [http://seqcore.brcf.med.umich.edu/doc/educ/dnapr/mbglossary/mbgloss.html]	45274	\N	\N	sequence	0	SO	cDNA_clone	cDNA_clone
SO:0000151	SO:0000317	\N	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0000317	"Complementary DNA; A piece of DNA copied from an mRNA and spliced into a vector for propagation in a suitable host." [http://seqcore.brcf.med.umich.edu/doc/educ/dnapr/mbglossary/mbgloss.html]	489883	\N	SOFA	sequence	1	SO	clone	cDNA_clone
SO:0000695	SO:0000151	\N	"A sequence used in experiment." [SO:ke]	SO:0000317	"Complementary DNA; A piece of DNA copied from an mRNA and spliced into a vector for propagation in a suitable host." [http://seqcore.brcf.med.umich.edu/doc/educ/dnapr/mbglossary/mbgloss.html]	1072328	SOFA	SOFA	sequence	2	SO	reagent	cDNA_clone
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000317	"Complementary DNA; A piece of DNA copied from an mRNA and spliced into a vector for propagation in a suitable host." [http://seqcore.brcf.med.umich.edu/doc/educ/dnapr/mbglossary/mbgloss.html]	1903359	SOFA	SOFA	sequence	3	SO	biomaterial_region	cDNA_clone
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000317	"Complementary DNA; A piece of DNA copied from an mRNA and spliced into a vector for propagation in a suitable host." [http://seqcore.brcf.med.umich.edu/doc/educ/dnapr/mbglossary/mbgloss.html]	2927833	SOFA	SOFA	sequence	4	SO	region	cDNA_clone
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000317	"Complementary DNA; A piece of DNA copied from an mRNA and spliced into a vector for propagation in a suitable host." [http://seqcore.brcf.med.umich.edu/doc/educ/dnapr/mbglossary/mbgloss.html]	4001225	SOFA	SOFA	sequence	5	SO	sequence_feature	cDNA_clone
SO:0000318	\N	SOFA	"First codon to be translated by a ribosome." [SO:ke]	SO:0000318	"First codon to be translated by a ribosome." [SO:ke]	45275	\N	SOFA	sequence	0	SO	start_codon	start_codon
SO:0000360	SO:0000318	SOFA	"A set of (usually) three nucleotide bases in a DNA or RNA sequence, which together code for a unique amino acid or the termination of translation and are contained within the CDS." [SO:ke]	SO:0000318	"First codon to be translated by a ribosome." [SO:ke]	489884	SOFA	SOFA	sequence	1	SO	codon	start_codon
SO:0000851	SO:0000360	SOFA	"A region of a CDS." [SO:cb]	SO:0000318	"First codon to be translated by a ribosome." [SO:ke]	1072329	SOFA	SOFA	sequence	2	SO	CDS_region	start_codon
SO:0000316	SO:0000851	SOFA	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	SO:0000318	"First codon to be translated by a ribosome." [SO:ke]	1903360	SOFA	SOFA	sequence	3	SO	CDS	start_codon
SO:0000836	SO:0000851	SOFA	"A region of an mRNA." [SO:cb]	SO:0000318	"First codon to be translated by a ribosome." [SO:ke]	1903361	SOFA	SOFA	sequence	3	SO	mRNA_region	start_codon
SO:0000836	SO:0000316	SOFA	"A region of an mRNA." [SO:cb]	SO:0000318	"First codon to be translated by a ribosome." [SO:ke]	2927834	SOFA	SOFA	sequence	4	SO	mRNA_region	start_codon
SO:0000234	SO:0000836	SOFA	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000318	"First codon to be translated by a ribosome." [SO:ke]	4001226	SOFA	SOFA	sequence	5	SO	mRNA	start_codon
SO:0000834	SO:0000836	SOFA	"A region of a mature transcript." [SO:ke]	SO:0000318	"First codon to be translated by a ribosome." [SO:ke]	4001227	SOFA	SOFA	sequence	5	SO	mature_transcript_region	start_codon
SO:0000233	SO:0000234	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000318	"First codon to be translated by a ribosome." [SO:ke]	4385715	SOFA	SOFA	sequence	6	SO	mature_transcript	start_codon
SO:0000833	SO:0000834	SOFA	"A region of a transcript." [SO:ke]	SO:0000318	"First codon to be translated by a ribosome." [SO:ke]	4385716	SOFA	SOFA	sequence	6	SO	transcript_region	start_codon
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000318	"First codon to be translated by a ribosome." [SO:ke]	5407380	SOFA	SOFA	sequence	7	SO	transcript	start_codon
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000318	"First codon to be translated by a ribosome." [SO:ke]	5407381	SOFA	SOFA	sequence	7	SO	transcript	start_codon
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000318	"First codon to be translated by a ribosome." [SO:ke]	5407382	SOFA	SOFA	sequence	7	SO	biological_region	start_codon
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000318	"First codon to be translated by a ribosome." [SO:ke]	6146610	SOFA	SOFA	sequence	8	SO	gene_member_region	start_codon
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000318	"First codon to be translated by a ribosome." [SO:ke]	6925077	SOFA	SOFA	sequence	10	SO	region	start_codon
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000318	"First codon to be translated by a ribosome." [SO:ke]	6631371	SOFA	SOFA	sequence	9	SO	biological_region	start_codon
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000318	"First codon to be translated by a ribosome." [SO:ke]	7068342	SOFA	SOFA	sequence	11	SO	sequence_feature	start_codon
SO:0000319	\N	SOFA	"In mRNA, a set of three nucleotides that indicates the end of information for protein synthesis." [SO:ke]	SO:0000319	"In mRNA, a set of three nucleotides that indicates the end of information for protein synthesis." [SO:ke]	45276	\N	SOFA	sequence	0	SO	stop_codon	stop_codon
SO:0000360	SO:0000319	SOFA	"A set of (usually) three nucleotide bases in a DNA or RNA sequence, which together code for a unique amino acid or the termination of translation and are contained within the CDS." [SO:ke]	SO:0000319	"In mRNA, a set of three nucleotides that indicates the end of information for protein synthesis." [SO:ke]	489885	SOFA	SOFA	sequence	1	SO	codon	stop_codon
SO:0000851	SO:0000360	SOFA	"A region of a CDS." [SO:cb]	SO:0000319	"In mRNA, a set of three nucleotides that indicates the end of information for protein synthesis." [SO:ke]	1072330	SOFA	SOFA	sequence	2	SO	CDS_region	stop_codon
SO:0000316	SO:0000851	SOFA	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	SO:0000319	"In mRNA, a set of three nucleotides that indicates the end of information for protein synthesis." [SO:ke]	1903362	SOFA	SOFA	sequence	3	SO	CDS	stop_codon
SO:0000836	SO:0000851	SOFA	"A region of an mRNA." [SO:cb]	SO:0000319	"In mRNA, a set of three nucleotides that indicates the end of information for protein synthesis." [SO:ke]	1903363	SOFA	SOFA	sequence	3	SO	mRNA_region	stop_codon
SO:0000836	SO:0000316	SOFA	"A region of an mRNA." [SO:cb]	SO:0000319	"In mRNA, a set of three nucleotides that indicates the end of information for protein synthesis." [SO:ke]	2927837	SOFA	SOFA	sequence	4	SO	mRNA_region	stop_codon
SO:0000234	SO:0000836	SOFA	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000319	"In mRNA, a set of three nucleotides that indicates the end of information for protein synthesis." [SO:ke]	4001230	SOFA	SOFA	sequence	5	SO	mRNA	stop_codon
SO:0000834	SO:0000836	SOFA	"A region of a mature transcript." [SO:ke]	SO:0000319	"In mRNA, a set of three nucleotides that indicates the end of information for protein synthesis." [SO:ke]	4001231	SOFA	SOFA	sequence	5	SO	mature_transcript_region	stop_codon
SO:0000233	SO:0000234	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000319	"In mRNA, a set of three nucleotides that indicates the end of information for protein synthesis." [SO:ke]	4385717	SOFA	SOFA	sequence	6	SO	mature_transcript	stop_codon
SO:0000833	SO:0000834	SOFA	"A region of a transcript." [SO:ke]	SO:0000319	"In mRNA, a set of three nucleotides that indicates the end of information for protein synthesis." [SO:ke]	4385718	SOFA	SOFA	sequence	6	SO	transcript_region	stop_codon
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000319	"In mRNA, a set of three nucleotides that indicates the end of information for protein synthesis." [SO:ke]	5407383	SOFA	SOFA	sequence	7	SO	transcript	stop_codon
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000319	"In mRNA, a set of three nucleotides that indicates the end of information for protein synthesis." [SO:ke]	5407384	SOFA	SOFA	sequence	7	SO	transcript	stop_codon
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000319	"In mRNA, a set of three nucleotides that indicates the end of information for protein synthesis." [SO:ke]	5407385	SOFA	SOFA	sequence	7	SO	biological_region	stop_codon
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000319	"In mRNA, a set of three nucleotides that indicates the end of information for protein synthesis." [SO:ke]	6146612	SOFA	SOFA	sequence	8	SO	gene_member_region	stop_codon
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000319	"In mRNA, a set of three nucleotides that indicates the end of information for protein synthesis." [SO:ke]	6925078	SOFA	SOFA	sequence	10	SO	region	stop_codon
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000319	"In mRNA, a set of three nucleotides that indicates the end of information for protein synthesis." [SO:ke]	6631373	SOFA	SOFA	sequence	9	SO	biological_region	stop_codon
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000319	"In mRNA, a set of three nucleotides that indicates the end of information for protein synthesis." [SO:ke]	7068343	SOFA	SOFA	sequence	11	SO	sequence_feature	stop_codon
SO:0000320	\N	\N	"Sequences within the intron that modulate splice site selection for some introns." [SO:ke]	SO:0000320	"Sequences within the intron that modulate splice site selection for some introns." [SO:ke]	45277	\N	\N	sequence	0	SO	intronic_splice_enhancer	intronic_splice_enhancer
SO:0000344	SO:0000320	\N	"Region of a transcript that regulates splicing." [SO:ke]	SO:0000320	"Sequences within the intron that modulate splice site selection for some introns." [SO:ke]	489886	\N	SOFA	sequence	1	SO	splice_enhancer	intronic_splice_enhancer
SO:0000841	SO:0000320	\N	"A region within an intron." [SO:ke]	SO:0000320	"Sequences within the intron that modulate splice site selection for some introns." [SO:ke]	489887	\N	SOFA	sequence	1	SO	spliceosomal_intron_region	intronic_splice_enhancer
SO:0000165	SO:0000344	\N	"A cis-acting sequence that increases the utilization of (some) eukaryotic promoters, and can function in either orientation and in any location (upstream or downstream) relative to the promoter." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000320	"Sequences within the intron that modulate splice site selection for some introns." [SO:ke]	1072331	SOFA	SOFA	sequence	2	SO	enhancer	intronic_splice_enhancer
SO:0001056	SO:0000344	\N	"A regulatory_region that modulates splicing." [SO:ke]	SO:0000320	"Sequences within the intron that modulate splice site selection for some introns." [SO:ke]	1072332	SOFA	SOFA	sequence	2	SO	splicing_regulatory_region	intronic_splice_enhancer
SO:0000662	SO:0000841	\N	"An intron which is spliced by the spliceosome." [SO:ke]	SO:0000320	"Sequences within the intron that modulate splice site selection for some introns." [SO:ke]	1072333	SOFA	SOFA	sequence	2	SO	spliceosomal_intron	intronic_splice_enhancer
SO:0000835	SO:0000841	\N	"A part of a primary transcript." [SO:ke]	SO:0000320	"Sequences within the intron that modulate splice site selection for some introns." [SO:ke]	1072334	SOFA	SOFA	sequence	2	SO	primary_transcript_region	intronic_splice_enhancer
SO:0000727	SO:0000165	\N	"A regulatory region where transcription factor binding sites clustered to regulate various aspects of transcription activities. (CRMs can be located a few kb to hundred kb upstream of the basal promoter, in the coding sequence, within introns, or in the downstream 3'UTR sequences, as well as on different chromosome). A single gene can be regulated by multiple CRMs to give precise control of its spatial and temporal expression. CRMs function as nodes in large, intertwined regulatory network." [PMID:19660565, SO:SG]	SO:0000320	"Sequences within the intron that modulate splice site selection for some introns." [SO:ke]	1903364	SOFA	SOFA	sequence	3	SO	CRM	intronic_splice_enhancer
SO:0001679	SO:0001056	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000320	"Sequences within the intron that modulate splice site selection for some introns." [SO:ke]	1903365	SOFA	SOFA	sequence	3	SO	transcription_regulatory_region	intronic_splice_enhancer
SO:0000188	SO:0000662	\N	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000320	"Sequences within the intron that modulate splice site selection for some introns." [SO:ke]	1903366	SOFA	SOFA	sequence	3	SO	intron	intronic_splice_enhancer
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000320	"Sequences within the intron that modulate splice site selection for some introns." [SO:ke]	4001236	SOFA	SOFA	sequence	5	SO	primary_transcript	intronic_splice_enhancer
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0000320	"Sequences within the intron that modulate splice site selection for some introns." [SO:ke]	4001237	SOFA	SOFA	sequence	5	SO	transcript_region	intronic_splice_enhancer
SO:0001055	SO:0000727	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0000320	"Sequences within the intron that modulate splice site selection for some introns." [SO:ke]	2927840	SOFA	SOFA	sequence	4	SO	transcriptional_cis_regulatory_region	intronic_splice_enhancer
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000320	"Sequences within the intron that modulate splice site selection for some introns." [SO:ke]	4965835	SOFA	SOFA	sequence	6	SO	regulatory_region	intronic_splice_enhancer
SO:0000835	SO:0000188	\N	"A part of a primary transcript." [SO:ke]	SO:0000320	"Sequences within the intron that modulate splice site selection for some introns." [SO:ke]	2927842	SOFA	SOFA	sequence	4	SO	primary_transcript_region	intronic_splice_enhancer
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000320	"Sequences within the intron that modulate splice site selection for some introns." [SO:ke]	4132283	SOFA	SOFA	sequence	6	SO	transcript	intronic_splice_enhancer
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000320	"Sequences within the intron that modulate splice site selection for some introns." [SO:ke]	4132284	SOFA	SOFA	sequence	6	SO	transcript	intronic_splice_enhancer
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000320	"Sequences within the intron that modulate splice site selection for some introns." [SO:ke]	4132285	SOFA	SOFA	sequence	6	SO	biological_region	intronic_splice_enhancer
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000320	"Sequences within the intron that modulate splice site selection for some introns." [SO:ke]	4001234	SOFA	SOFA	sequence	5	SO	transcription_regulatory_region	intronic_splice_enhancer
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0000320	"Sequences within the intron that modulate splice site selection for some introns." [SO:ke]	5180672	SOFA	SOFA	sequence	7	SO	gene_member_region	intronic_splice_enhancer
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000320	"Sequences within the intron that modulate splice site selection for some introns." [SO:ke]	5180673	SOFA	SOFA	sequence	7	SO	gene_member_region	intronic_splice_enhancer
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000320	"Sequences within the intron that modulate splice site selection for some introns." [SO:ke]	6550245	SOFA	SOFA	sequence	9	SO	region	intronic_splice_enhancer
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000320	"Sequences within the intron that modulate splice site selection for some introns." [SO:ke]	5996373	SOFA	SOFA	sequence	8	SO	biological_region	intronic_splice_enhancer
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000320	"Sequences within the intron that modulate splice site selection for some introns." [SO:ke]	6807569	SOFA	SOFA	sequence	10	SO	sequence_feature	intronic_splice_enhancer
SO:0000321	\N	\N	"An mRNA with a plus 1 frameshift." [SO:ke]	SO:0000321	"An mRNA with a plus 1 frameshift." [SO:ke]	45278	\N	\N	sequence	0	SO	mRNA_with_plus_1_frameshift	mRNA_with_plus_1_frameshift
SO:0000108	SO:0000321	\N	"An mRNA with a frameshift." [SO:xp]	SO:0000321	"An mRNA with a plus 1 frameshift." [SO:ke]	489888	\N	\N	sequence	1	SO	mRNA_with_frameshift	mRNA_with_plus_1_frameshift
SO:0000234	SO:0000108	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000321	"An mRNA with a plus 1 frameshift." [SO:ke]	1072335	\N	SOFA	sequence	2	SO	mRNA	mRNA_with_plus_1_frameshift
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000321	"An mRNA with a plus 1 frameshift." [SO:ke]	1903369	SOFA	SOFA	sequence	3	SO	mature_transcript	mRNA_with_plus_1_frameshift
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000321	"An mRNA with a plus 1 frameshift." [SO:ke]	2927846	SOFA	SOFA	sequence	4	SO	transcript	mRNA_with_plus_1_frameshift
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000321	"An mRNA with a plus 1 frameshift." [SO:ke]	4001240	SOFA	SOFA	sequence	5	SO	gene_member_region	mRNA_with_plus_1_frameshift
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000321	"An mRNA with a plus 1 frameshift." [SO:ke]	4965838	SOFA	SOFA	sequence	6	SO	biological_region	mRNA_with_plus_1_frameshift
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000321	"An mRNA with a plus 1 frameshift." [SO:ke]	5740820	SOFA	SOFA	sequence	7	SO	region	mRNA_with_plus_1_frameshift
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000321	"An mRNA with a plus 1 frameshift." [SO:ke]	6310801	SOFA	SOFA	sequence	8	SO	sequence_feature	mRNA_with_plus_1_frameshift
SO:0000322	\N	\N	"" []	SO:0000322	"" []	45279	\N	\N	sequence	0	SO	nuclease_hypersensitive_site	nuclease_hypersensitive_site
SO:0000684	SO:0000322	\N	"A region of nucleotide sequence targeted by a nuclease enzyme." [SO:ma]	SO:0000322	"" []	489889	\N	SOFA	sequence	1	SO	nuclease_sensitive_site	nuclease_hypersensitive_site
SO:0000059	SO:0000684	\N	"A binding site that, of a nucleotide molecule, that interacts selectively and non-covalently with polypeptide residues of a nuclease." [SO:cb]	SO:0000322	"" []	1072336	SOFA	SOFA	sequence	2	SO	nuclease_binding_site	nuclease_hypersensitive_site
SO:0001654	SO:0000059	\N	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	SO:0000322	"" []	1903370	SOFA	SOFA	sequence	3	SO	nucleotide_to_protein_binding_site	nuclease_hypersensitive_site
SO:0000410	SO:0001654	\N	"A binding site that, in the molecule, interacts selectively and non-covalently with polypeptide molecules." [SO:ke]	SO:0000322	"" []	2927847	SOFA	SOFA	sequence	4	SO	protein_binding_site	nuclease_hypersensitive_site
SO:0000409	SO:0000410	\N	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0000322	"" []	4001241	SOFA	biosapiens,SOFA	sequence	5	SO	binding_site	nuclease_hypersensitive_site
SO:0001411	SO:0000409	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000322	"" []	4965839	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	nuclease_hypersensitive_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000322	"" []	5740821	SOFA	SOFA	sequence	7	SO	region	nuclease_hypersensitive_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000322	"" []	6310802	SOFA	SOFA	sequence	8	SO	sequence_feature	nuclease_hypersensitive_site
SO:0000323	\N	\N	"The first base to be translated into protein." [SO:ke]	SO:0000323	"The first base to be translated into protein." [SO:ke]	45280	\N	\N	sequence	0	SO	coding_start	coding_start
SO:0000851	SO:0000323	\N	"A region of a CDS." [SO:cb]	SO:0000323	"The first base to be translated into protein." [SO:ke]	489890	\N	SOFA	sequence	1	SO	CDS_region	coding_start
SO:0000316	SO:0000851	\N	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	SO:0000323	"The first base to be translated into protein." [SO:ke]	1072337	SOFA	SOFA	sequence	2	SO	CDS	coding_start
SO:0000836	SO:0000851	\N	"A region of an mRNA." [SO:cb]	SO:0000323	"The first base to be translated into protein." [SO:ke]	1072338	SOFA	SOFA	sequence	2	SO	mRNA_region	coding_start
SO:0000836	SO:0000316	\N	"A region of an mRNA." [SO:cb]	SO:0000323	"The first base to be translated into protein." [SO:ke]	1903371	SOFA	SOFA	sequence	3	SO	mRNA_region	coding_start
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000323	"The first base to be translated into protein." [SO:ke]	2927848	SOFA	SOFA	sequence	4	SO	mRNA	coding_start
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:0000323	"The first base to be translated into protein." [SO:ke]	2927849	SOFA	SOFA	sequence	4	SO	mature_transcript_region	coding_start
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000323	"The first base to be translated into protein." [SO:ke]	3173867	SOFA	SOFA	sequence	5	SO	mature_transcript	coding_start
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0000323	"The first base to be translated into protein." [SO:ke]	3173868	SOFA	SOFA	sequence	5	SO	transcript_region	coding_start
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000323	"The first base to be translated into protein." [SO:ke]	4385719	SOFA	SOFA	sequence	6	SO	transcript	coding_start
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000323	"The first base to be translated into protein." [SO:ke]	4385720	SOFA	SOFA	sequence	6	SO	transcript	coding_start
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000323	"The first base to be translated into protein." [SO:ke]	4385721	SOFA	SOFA	sequence	6	SO	biological_region	coding_start
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000323	"The first base to be translated into protein." [SO:ke]	5407386	SOFA	SOFA	sequence	7	SO	gene_member_region	coding_start
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000323	"The first base to be translated into protein." [SO:ke]	6631375	SOFA	SOFA	sequence	9	SO	region	coding_start
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000323	"The first base to be translated into protein." [SO:ke]	6146614	SOFA	SOFA	sequence	8	SO	biological_region	coding_start
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000323	"The first base to be translated into protein." [SO:ke]	6848174	SOFA	SOFA	sequence	10	SO	sequence_feature	coding_start
SO:0000324	\N	SOFA	"A nucleotide sequence that may be used to identify a larger sequence." [SO:ke]	SO:0000324	"A nucleotide sequence that may be used to identify a larger sequence." [SO:ke]	45281	\N	SOFA	sequence	0	SO	tag	tag
SO:0000696	SO:0000324	SOFA	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0000324	"A nucleotide sequence that may be used to identify a larger sequence." [SO:ke]	489891	SOFA	SOFA	sequence	1	SO	oligo	tag
SO:0000695	SO:0000696	SOFA	"A sequence used in experiment." [SO:ke]	SO:0000324	"A nucleotide sequence that may be used to identify a larger sequence." [SO:ke]	1072339	SOFA	SOFA	sequence	2	SO	reagent	tag
SO:0001409	SO:0000695	SOFA	"A region which is intended for use in an experiment." [SO:cb]	SO:0000324	"A nucleotide sequence that may be used to identify a larger sequence." [SO:ke]	1903374	SOFA	SOFA	sequence	3	SO	biomaterial_region	tag
SO:0000001	SO:0001409	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000324	"A nucleotide sequence that may be used to identify a larger sequence." [SO:ke]	2927852	SOFA	SOFA	sequence	4	SO	region	tag
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000324	"A nucleotide sequence that may be used to identify a larger sequence." [SO:ke]	4001245	SOFA	SOFA	sequence	5	SO	sequence_feature	tag
SO:0000325	\N	SOFA	"A primary transcript encoding a large ribosomal subunit RNA." [SO:ke]	SO:0000325	"A primary transcript encoding a large ribosomal subunit RNA." [SO:ke]	45282	\N	SOFA	sequence	0	SO	rRNA_large_subunit_primary_transcript	rRNA_large_subunit_primary_transcript
SO:0000209	SO:0000325	SOFA	"A primary transcript encoding a ribosomal RNA." [SO:ke]	SO:0000325	"A primary transcript encoding a large ribosomal subunit RNA." [SO:ke]	489892	SOFA	SOFA	sequence	1	SO	rRNA_primary_transcript	rRNA_large_subunit_primary_transcript
SO:0000483	SO:0000209	SOFA	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000325	"A primary transcript encoding a large ribosomal subunit RNA." [SO:ke]	1072340	SOFA	SOFA	sequence	2	SO	nc_primary_transcript	rRNA_large_subunit_primary_transcript
SO:0000185	SO:0000483	SOFA	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000325	"A primary transcript encoding a large ribosomal subunit RNA." [SO:ke]	1903375	SOFA	SOFA	sequence	3	SO	primary_transcript	rRNA_large_subunit_primary_transcript
SO:0000673	SO:0000185	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000325	"A primary transcript encoding a large ribosomal subunit RNA." [SO:ke]	2927853	SOFA	SOFA	sequence	4	SO	transcript	rRNA_large_subunit_primary_transcript
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000325	"A primary transcript encoding a large ribosomal subunit RNA." [SO:ke]	4001246	SOFA	SOFA	sequence	5	SO	gene_member_region	rRNA_large_subunit_primary_transcript
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000325	"A primary transcript encoding a large ribosomal subunit RNA." [SO:ke]	4965842	SOFA	SOFA	sequence	6	SO	biological_region	rRNA_large_subunit_primary_transcript
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000325	"A primary transcript encoding a large ribosomal subunit RNA." [SO:ke]	5740824	SOFA	SOFA	sequence	7	SO	region	rRNA_large_subunit_primary_transcript
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000325	"A primary transcript encoding a large ribosomal subunit RNA." [SO:ke]	6310804	SOFA	SOFA	sequence	8	SO	sequence_feature	rRNA_large_subunit_primary_transcript
SO:0000326	\N	SOFA	"A short diagnostic sequence tag, serial analysis of gene expression (SAGE), that allows the quantitative and simultaneous analysis of a large number of transcripts." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=7570003&dopt=Abstract]	SO:0000326	"A short diagnostic sequence tag, serial analysis of gene expression (SAGE), that allows the quantitative and simultaneous analysis of a large number of transcripts." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=7570003&dopt=Abstract]	45283	\N	SOFA	sequence	0	SO	SAGE_tag	SAGE_tag
SO:0000324	SO:0000326	SOFA	"A nucleotide sequence that may be used to identify a larger sequence." [SO:ke]	SO:0000326	"A short diagnostic sequence tag, serial analysis of gene expression (SAGE), that allows the quantitative and simultaneous analysis of a large number of transcripts." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=7570003&dopt=Abstract]	489893	SOFA	SOFA	sequence	1	SO	tag	SAGE_tag
SO:0000696	SO:0000324	SOFA	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0000326	"A short diagnostic sequence tag, serial analysis of gene expression (SAGE), that allows the quantitative and simultaneous analysis of a large number of transcripts." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=7570003&dopt=Abstract]	1072341	SOFA	SOFA	sequence	2	SO	oligo	SAGE_tag
SO:0000695	SO:0000696	SOFA	"A sequence used in experiment." [SO:ke]	SO:0000326	"A short diagnostic sequence tag, serial analysis of gene expression (SAGE), that allows the quantitative and simultaneous analysis of a large number of transcripts." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=7570003&dopt=Abstract]	1903376	SOFA	SOFA	sequence	3	SO	reagent	SAGE_tag
SO:0001409	SO:0000695	SOFA	"A region which is intended for use in an experiment." [SO:cb]	SO:0000326	"A short diagnostic sequence tag, serial analysis of gene expression (SAGE), that allows the quantitative and simultaneous analysis of a large number of transcripts." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=7570003&dopt=Abstract]	2927854	SOFA	SOFA	sequence	4	SO	biomaterial_region	SAGE_tag
SO:0000001	SO:0001409	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000326	"A short diagnostic sequence tag, serial analysis of gene expression (SAGE), that allows the quantitative and simultaneous analysis of a large number of transcripts." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=7570003&dopt=Abstract]	4001247	SOFA	SOFA	sequence	5	SO	region	SAGE_tag
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000326	"A short diagnostic sequence tag, serial analysis of gene expression (SAGE), that allows the quantitative and simultaneous analysis of a large number of transcripts." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=7570003&dopt=Abstract]	4965843	SOFA	SOFA	sequence	6	SO	sequence_feature	SAGE_tag
SO:0000327	\N	\N	"The last base to be translated into protein. It does not include the stop codon." [SO:ke]	SO:0000327	"The last base to be translated into protein. It does not include the stop codon." [SO:ke]	45284	\N	\N	sequence	0	SO	coding_end	coding_end
SO:0000851	SO:0000327	\N	"A region of a CDS." [SO:cb]	SO:0000327	"The last base to be translated into protein. It does not include the stop codon." [SO:ke]	489894	\N	SOFA	sequence	1	SO	CDS_region	coding_end
SO:0000316	SO:0000851	\N	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	SO:0000327	"The last base to be translated into protein. It does not include the stop codon." [SO:ke]	1072342	SOFA	SOFA	sequence	2	SO	CDS	coding_end
SO:0000836	SO:0000851	\N	"A region of an mRNA." [SO:cb]	SO:0000327	"The last base to be translated into protein. It does not include the stop codon." [SO:ke]	1072343	SOFA	SOFA	sequence	2	SO	mRNA_region	coding_end
SO:0000836	SO:0000316	\N	"A region of an mRNA." [SO:cb]	SO:0000327	"The last base to be translated into protein. It does not include the stop codon." [SO:ke]	1903377	SOFA	SOFA	sequence	3	SO	mRNA_region	coding_end
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000327	"The last base to be translated into protein. It does not include the stop codon." [SO:ke]	2927855	SOFA	SOFA	sequence	4	SO	mRNA	coding_end
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:0000327	"The last base to be translated into protein. It does not include the stop codon." [SO:ke]	2927856	SOFA	SOFA	sequence	4	SO	mature_transcript_region	coding_end
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000327	"The last base to be translated into protein. It does not include the stop codon." [SO:ke]	3173869	SOFA	SOFA	sequence	5	SO	mature_transcript	coding_end
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0000327	"The last base to be translated into protein. It does not include the stop codon." [SO:ke]	3173870	SOFA	SOFA	sequence	5	SO	transcript_region	coding_end
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000327	"The last base to be translated into protein. It does not include the stop codon." [SO:ke]	4385722	SOFA	SOFA	sequence	6	SO	transcript	coding_end
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000327	"The last base to be translated into protein. It does not include the stop codon." [SO:ke]	4385723	SOFA	SOFA	sequence	6	SO	transcript	coding_end
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000327	"The last base to be translated into protein. It does not include the stop codon." [SO:ke]	4385724	SOFA	SOFA	sequence	6	SO	biological_region	coding_end
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000327	"The last base to be translated into protein. It does not include the stop codon." [SO:ke]	5407388	SOFA	SOFA	sequence	7	SO	gene_member_region	coding_end
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000327	"The last base to be translated into protein. It does not include the stop codon." [SO:ke]	6631376	SOFA	SOFA	sequence	9	SO	region	coding_end
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000327	"The last base to be translated into protein. It does not include the stop codon." [SO:ke]	6146616	SOFA	SOFA	sequence	8	SO	biological_region	coding_end
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000327	"The last base to be translated into protein. It does not include the stop codon." [SO:ke]	6848175	SOFA	SOFA	sequence	10	SO	sequence_feature	coding_end
SO:0000328	\N	\N	"" []	SO:0000328	"" []	45285	\N	\N	sequence	0	SO	microarray_oligo	microarray_oligo
SO:0000051	SO:0000328	\N	"A DNA sequence used experimentally to detect the presence or absence of a complementary nucleic acid." [SO:ma]	SO:0000328	"" []	489895	\N	\N	sequence	1	SO	probe	microarray_oligo
SO:0000696	SO:0000051	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0000328	"" []	1072344	\N	SOFA	sequence	2	SO	oligo	microarray_oligo
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0000328	"" []	1903380	SOFA	SOFA	sequence	3	SO	reagent	microarray_oligo
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000328	"" []	2927859	SOFA	SOFA	sequence	4	SO	biomaterial_region	microarray_oligo
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000328	"" []	4001251	SOFA	SOFA	sequence	5	SO	region	microarray_oligo
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000328	"" []	4965846	SOFA	SOFA	sequence	6	SO	sequence_feature	microarray_oligo
SO:0000329	\N	\N	"An mRNA with a plus 2 frameshift." [SO:xp]	SO:0000329	"An mRNA with a plus 2 frameshift." [SO:xp]	45286	\N	\N	sequence	0	SO	mRNA_with_plus_2_frameshift	mRNA_with_plus_2_frameshift
SO:0000108	SO:0000329	\N	"An mRNA with a frameshift." [SO:xp]	SO:0000329	"An mRNA with a plus 2 frameshift." [SO:xp]	489896	\N	\N	sequence	1	SO	mRNA_with_frameshift	mRNA_with_plus_2_frameshift
SO:0000234	SO:0000108	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000329	"An mRNA with a plus 2 frameshift." [SO:xp]	1072345	\N	SOFA	sequence	2	SO	mRNA	mRNA_with_plus_2_frameshift
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000329	"An mRNA with a plus 2 frameshift." [SO:xp]	1903381	SOFA	SOFA	sequence	3	SO	mature_transcript	mRNA_with_plus_2_frameshift
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000329	"An mRNA with a plus 2 frameshift." [SO:xp]	2927860	SOFA	SOFA	sequence	4	SO	transcript	mRNA_with_plus_2_frameshift
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000329	"An mRNA with a plus 2 frameshift." [SO:xp]	4001252	SOFA	SOFA	sequence	5	SO	gene_member_region	mRNA_with_plus_2_frameshift
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000329	"An mRNA with a plus 2 frameshift." [SO:xp]	4965847	SOFA	SOFA	sequence	6	SO	biological_region	mRNA_with_plus_2_frameshift
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000329	"An mRNA with a plus 2 frameshift." [SO:xp]	5740827	SOFA	SOFA	sequence	7	SO	region	mRNA_with_plus_2_frameshift
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000329	"An mRNA with a plus 2 frameshift." [SO:xp]	6310806	SOFA	SOFA	sequence	8	SO	sequence_feature	mRNA_with_plus_2_frameshift
SO:0000330	\N	SOFA	"Region of sequence similarity by descent from a common ancestor." [SO:ke]	SO:0000330	"Region of sequence similarity by descent from a common ancestor." [SO:ke]	45287	\N	SOFA	sequence	0	SO	conserved_region	conserved_region
SO:0001410	SO:0000330	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000330	"Region of sequence similarity by descent from a common ancestor." [SO:ke]	489897	SOFA	SOFA	sequence	1	SO	experimental_feature	conserved_region
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000330	"Region of sequence similarity by descent from a common ancestor." [SO:ke]	1072346	SOFA	SOFA	sequence	2	SO	region	conserved_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000330	"Region of sequence similarity by descent from a common ancestor." [SO:ke]	1903382	SOFA	SOFA	sequence	3	SO	sequence_feature	conserved_region
SO:0000331	\N	SOFA	"Short (typically a few hundred base pairs) DNA sequence that has a single occurrence in a genome and whose location and base sequence are known." [http://www.biospace.com]	SO:0000331	"Short (typically a few hundred base pairs) DNA sequence that has a single occurrence in a genome and whose location and base sequence are known." [http://www.biospace.com]	45288	\N	SOFA	sequence	0	SO	STS	STS
SO:0000324	SO:0000331	SOFA	"A nucleotide sequence that may be used to identify a larger sequence." [SO:ke]	SO:0000331	"Short (typically a few hundred base pairs) DNA sequence that has a single occurrence in a genome and whose location and base sequence are known." [http://www.biospace.com]	489898	SOFA	SOFA	sequence	1	SO	tag	STS
SO:0000696	SO:0000324	SOFA	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0000331	"Short (typically a few hundred base pairs) DNA sequence that has a single occurrence in a genome and whose location and base sequence are known." [http://www.biospace.com]	1072347	SOFA	SOFA	sequence	2	SO	oligo	STS
SO:0000695	SO:0000696	SOFA	"A sequence used in experiment." [SO:ke]	SO:0000331	"Short (typically a few hundred base pairs) DNA sequence that has a single occurrence in a genome and whose location and base sequence are known." [http://www.biospace.com]	1903383	SOFA	SOFA	sequence	3	SO	reagent	STS
SO:0001409	SO:0000695	SOFA	"A region which is intended for use in an experiment." [SO:cb]	SO:0000331	"Short (typically a few hundred base pairs) DNA sequence that has a single occurrence in a genome and whose location and base sequence are known." [http://www.biospace.com]	2927861	SOFA	SOFA	sequence	4	SO	biomaterial_region	STS
SO:0000001	SO:0001409	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000331	"Short (typically a few hundred base pairs) DNA sequence that has a single occurrence in a genome and whose location and base sequence are known." [http://www.biospace.com]	4001253	SOFA	SOFA	sequence	5	SO	region	STS
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000331	"Short (typically a few hundred base pairs) DNA sequence that has a single occurrence in a genome and whose location and base sequence are known." [http://www.biospace.com]	4965848	SOFA	SOFA	sequence	6	SO	sequence_feature	STS
SO:0000332	\N	SOFA	"Coding region of sequence similarity by descent from a common ancestor." [SO:ke]	SO:0000332	"Coding region of sequence similarity by descent from a common ancestor." [SO:ke]	45289	\N	SOFA	sequence	0	SO	coding_conserved_region	coding_conserved_region
SO:0000330	SO:0000332	SOFA	"Region of sequence similarity by descent from a common ancestor." [SO:ke]	SO:0000332	"Coding region of sequence similarity by descent from a common ancestor." [SO:ke]	489899	SOFA	SOFA	sequence	1	SO	conserved_region	coding_conserved_region
SO:0001410	SO:0000330	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000332	"Coding region of sequence similarity by descent from a common ancestor." [SO:ke]	1072348	SOFA	SOFA	sequence	2	SO	experimental_feature	coding_conserved_region
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000332	"Coding region of sequence similarity by descent from a common ancestor." [SO:ke]	1903384	SOFA	SOFA	sequence	3	SO	region	coding_conserved_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000332	"Coding region of sequence similarity by descent from a common ancestor." [SO:ke]	2927862	SOFA	SOFA	sequence	4	SO	sequence_feature	coding_conserved_region
SO:0000333	\N	SOFA	"The boundary between two exons in a processed transcript." [SO:ke]	SO:0000333	"The boundary between two exons in a processed transcript." [SO:ke]	45290	\N	SOFA	sequence	0	SO	exon_junction	exon_junction
SO:0000233	SO:0000333	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000333	"The boundary between two exons in a processed transcript." [SO:ke]	489900	SOFA	SOFA	sequence	1	SO	mature_transcript	exon_junction
SO:0000699	SO:0000333	SOFA	"A sequence_feature with an extent of zero." [SO:ke]	SO:0000333	"The boundary between two exons in a processed transcript." [SO:ke]	489901	SOFA	SOFA	sequence	1	SO	junction	exon_junction
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000333	"The boundary between two exons in a processed transcript." [SO:ke]	1072349	SOFA	SOFA	sequence	2	SO	transcript	exon_junction
SO:0000110	SO:0000699	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000333	"The boundary between two exons in a processed transcript." [SO:ke]	1072350	SOFA	SOFA	sequence	2	SO	sequence_feature	exon_junction
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000333	"The boundary between two exons in a processed transcript." [SO:ke]	1903385	SOFA	SOFA	sequence	3	SO	gene_member_region	exon_junction
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000333	"The boundary between two exons in a processed transcript." [SO:ke]	2927863	SOFA	SOFA	sequence	4	SO	biological_region	exon_junction
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000333	"The boundary between two exons in a processed transcript." [SO:ke]	4001254	SOFA	SOFA	sequence	5	SO	region	exon_junction
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000333	"The boundary between two exons in a processed transcript." [SO:ke]	4965849	SOFA	SOFA	sequence	6	SO	sequence_feature	exon_junction
SO:0000334	\N	SOFA	"Non-coding region of sequence similarity by descent from a common ancestor." [SO:ke]	SO:0000334	"Non-coding region of sequence similarity by descent from a common ancestor." [SO:ke]	45291	\N	SOFA	sequence	0	SO	nc_conserved_region	nc_conserved_region
SO:0000330	SO:0000334	SOFA	"Region of sequence similarity by descent from a common ancestor." [SO:ke]	SO:0000334	"Non-coding region of sequence similarity by descent from a common ancestor." [SO:ke]	489902	SOFA	SOFA	sequence	1	SO	conserved_region	nc_conserved_region
SO:0001410	SO:0000330	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000334	"Non-coding region of sequence similarity by descent from a common ancestor." [SO:ke]	1072351	SOFA	SOFA	sequence	2	SO	experimental_feature	nc_conserved_region
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000334	"Non-coding region of sequence similarity by descent from a common ancestor." [SO:ke]	1903386	SOFA	SOFA	sequence	3	SO	region	nc_conserved_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000334	"Non-coding region of sequence similarity by descent from a common ancestor." [SO:ke]	2927864	SOFA	SOFA	sequence	4	SO	sequence_feature	nc_conserved_region
SO:0000335	\N	\N	"A mRNA with a minus 2 frameshift." [SO:ke]	SO:0000335	"A mRNA with a minus 2 frameshift." [SO:ke]	45292	\N	\N	sequence	0	SO	mRNA_with_minus_2_frameshift	mRNA_with_minus_2_frameshift
SO:0000108	SO:0000335	\N	"An mRNA with a frameshift." [SO:xp]	SO:0000335	"A mRNA with a minus 2 frameshift." [SO:ke]	489903	\N	\N	sequence	1	SO	mRNA_with_frameshift	mRNA_with_minus_2_frameshift
SO:0000234	SO:0000108	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000335	"A mRNA with a minus 2 frameshift." [SO:ke]	1072352	\N	SOFA	sequence	2	SO	mRNA	mRNA_with_minus_2_frameshift
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000335	"A mRNA with a minus 2 frameshift." [SO:ke]	1903387	SOFA	SOFA	sequence	3	SO	mature_transcript	mRNA_with_minus_2_frameshift
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000335	"A mRNA with a minus 2 frameshift." [SO:ke]	2927865	SOFA	SOFA	sequence	4	SO	transcript	mRNA_with_minus_2_frameshift
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000335	"A mRNA with a minus 2 frameshift." [SO:ke]	4001255	SOFA	SOFA	sequence	5	SO	gene_member_region	mRNA_with_minus_2_frameshift
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000335	"A mRNA with a minus 2 frameshift." [SO:ke]	4965850	SOFA	SOFA	sequence	6	SO	biological_region	mRNA_with_minus_2_frameshift
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000335	"A mRNA with a minus 2 frameshift." [SO:ke]	5740828	SOFA	SOFA	sequence	7	SO	region	mRNA_with_minus_2_frameshift
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000335	"A mRNA with a minus 2 frameshift." [SO:ke]	6310807	SOFA	SOFA	sequence	8	SO	sequence_feature	mRNA_with_minus_2_frameshift
SO:0000336	\N	SOFA	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	SO:0000336	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	45293	\N	SOFA	sequence	0	SO	pseudogene	pseudogene
SO:0001411	SO:0000336	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000336	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	489904	SOFA	SOFA	sequence	1	SO	biological_region	pseudogene
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000336	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	1072353	SOFA	SOFA	sequence	2	SO	region	pseudogene
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000336	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	1903388	SOFA	SOFA	sequence	3	SO	sequence_feature	pseudogene
SO:0000337	\N	SOFA	"A double stranded RNA duplex, at least 20bp long, used experimentally to inhibit gene function by RNA interference." [SO:rd]	SO:0000337	"A double stranded RNA duplex, at least 20bp long, used experimentally to inhibit gene function by RNA interference." [SO:rd]	45294	\N	SOFA	sequence	0	SO	RNAi_reagent	RNAi_reagent
SO:0000442	SO:0000337	SOFA	"A double stranded oligonucleotide." [SO:ke]	SO:0000337	"A double stranded RNA duplex, at least 20bp long, used experimentally to inhibit gene function by RNA interference." [SO:rd]	489905	SOFA	SOFA	sequence	1	SO	ds_oligo	RNAi_reagent
SO:0000696	SO:0000442	SOFA	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0000337	"A double stranded RNA duplex, at least 20bp long, used experimentally to inhibit gene function by RNA interference." [SO:rd]	1072354	SOFA	SOFA	sequence	2	SO	oligo	RNAi_reagent
SO:0000695	SO:0000696	SOFA	"A sequence used in experiment." [SO:ke]	SO:0000337	"A double stranded RNA duplex, at least 20bp long, used experimentally to inhibit gene function by RNA interference." [SO:rd]	1903389	SOFA	SOFA	sequence	3	SO	reagent	RNAi_reagent
SO:0001409	SO:0000695	SOFA	"A region which is intended for use in an experiment." [SO:cb]	SO:0000337	"A double stranded RNA duplex, at least 20bp long, used experimentally to inhibit gene function by RNA interference." [SO:rd]	2927866	SOFA	SOFA	sequence	4	SO	biomaterial_region	RNAi_reagent
SO:0000001	SO:0001409	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000337	"A double stranded RNA duplex, at least 20bp long, used experimentally to inhibit gene function by RNA interference." [SO:rd]	4001256	SOFA	SOFA	sequence	5	SO	region	RNAi_reagent
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000337	"A double stranded RNA duplex, at least 20bp long, used experimentally to inhibit gene function by RNA interference." [SO:rd]	4965851	SOFA	SOFA	sequence	6	SO	sequence_feature	RNAi_reagent
SO:0000338	\N	\N	"A highly repetitive and short (100-500 base pair) transposable element with terminal inverted repeats (TIR) and target site duplication (TSD). MITEs do not encode proteins." [http://www.pnas.org/cgi/content/full/97/18/10083]	SO:0000338	"A highly repetitive and short (100-500 base pair) transposable element with terminal inverted repeats (TIR) and target site duplication (TSD). MITEs do not encode proteins." [http://www.pnas.org/cgi/content/full/97/18/10083]	45295	\N	\N	sequence	0	SO	MITE	MITE
SO:0000208	SO:0000338	\N	"A DNA transposable element defined as having termini with perfect, or nearly perfect short inverted repeats, generally 10 - 40 nucleotides long." [http://www.genetics.org/cgi/reprint/156/4/1983.pdf]	SO:0000338	"A highly repetitive and short (100-500 base pair) transposable element with terminal inverted repeats (TIR) and target site duplication (TSD). MITEs do not encode proteins." [http://www.pnas.org/cgi/content/full/97/18/10083]	489906	\N	\N	sequence	1	SO	terminal_inverted_repeat_element	MITE
SO:0000182	SO:0000208	\N	"A transposon where the mechanism of transposition is via a DNA intermediate." [SO:ke]	SO:0000338	"A highly repetitive and short (100-500 base pair) transposable element with terminal inverted repeats (TIR) and target site duplication (TSD). MITEs do not encode proteins." [http://www.pnas.org/cgi/content/full/97/18/10083]	1072355	\N	\N	sequence	2	SO	DNA_transposon	MITE
SO:0000101	SO:0000182	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000338	"A highly repetitive and short (100-500 base pair) transposable element with terminal inverted repeats (TIR) and target site duplication (TSD). MITEs do not encode proteins." [http://www.pnas.org/cgi/content/full/97/18/10083]	1903390	\N	SOFA	sequence	3	SO	transposable_element	MITE
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000338	"A highly repetitive and short (100-500 base pair) transposable element with terminal inverted repeats (TIR) and target site duplication (TSD). MITEs do not encode proteins." [http://www.pnas.org/cgi/content/full/97/18/10083]	2927867	SOFA	SOFA	sequence	4	SO	integrated_mobile_genetic_element	MITE
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000338	"A highly repetitive and short (100-500 base pair) transposable element with terminal inverted repeats (TIR) and target site duplication (TSD). MITEs do not encode proteins." [http://www.pnas.org/cgi/content/full/97/18/10083]	4001257	SOFA	SOFA	sequence	5	SO	mobile_genetic_element	MITE
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000338	"A highly repetitive and short (100-500 base pair) transposable element with terminal inverted repeats (TIR) and target site duplication (TSD). MITEs do not encode proteins." [http://www.pnas.org/cgi/content/full/97/18/10083]	4965852	SOFA	SOFA	sequence	6	SO	biological_region	MITE
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000338	"A highly repetitive and short (100-500 base pair) transposable element with terminal inverted repeats (TIR) and target site duplication (TSD). MITEs do not encode proteins." [http://www.pnas.org/cgi/content/full/97/18/10083]	5740829	SOFA	SOFA	sequence	7	SO	region	MITE
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000338	"A highly repetitive and short (100-500 base pair) transposable element with terminal inverted repeats (TIR) and target site duplication (TSD). MITEs do not encode proteins." [http://www.pnas.org/cgi/content/full/97/18/10083]	6310808	SOFA	SOFA	sequence	8	SO	sequence_feature	MITE
SO:0000339	\N	\N	"A region in a genome which promotes recombination." [SO:rd]	SO:0000339	"A region in a genome which promotes recombination." [SO:rd]	45296	\N	\N	sequence	0	SO	recombination_hotspot	recombination_hotspot
SO:0000298	SO:0000339	\N	"" []	SO:0000339	"A region in a genome which promotes recombination." [SO:rd]	489907	\N	\N	sequence	1	SO	recombination_feature	recombination_hotspot
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000339	"A region in a genome which promotes recombination." [SO:rd]	1072356	\N	SOFA	sequence	2	SO	biological_region	recombination_hotspot
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000339	"A region in a genome which promotes recombination." [SO:rd]	1903391	SOFA	SOFA	sequence	3	SO	region	recombination_hotspot
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000339	"A region in a genome which promotes recombination." [SO:rd]	2927868	SOFA	SOFA	sequence	4	SO	sequence_feature	recombination_hotspot
SO:0000340	\N	SOFA	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000340	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	45297	\N	SOFA	sequence	0	SO	chromosome	chromosome
SO:0001235	SO:0000340	SOFA	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000340	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	489908	SOFA	SOFA	sequence	1	SO	replicon	chromosome
SO:0001411	SO:0001235	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000340	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	1072357	SOFA	SOFA	sequence	2	SO	biological_region	chromosome
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000340	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	1903392	SOFA	SOFA	sequence	3	SO	region	chromosome
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000340	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	2927869	SOFA	SOFA	sequence	4	SO	sequence_feature	chromosome
SO:0000341	\N	SOFA	"A cytologically distinguishable feature of a chromosome, often made visible by staining, and usually alternating light and dark." [SO:ma]	SO:0000341	"A cytologically distinguishable feature of a chromosome, often made visible by staining, and usually alternating light and dark." [SO:ma]	45298	\N	SOFA	sequence	0	SO	chromosome_band	chromosome_band
SO:0000830	SO:0000341	SOFA	"A region of a chromosome." [SO:ke]	SO:0000341	"A cytologically distinguishable feature of a chromosome, often made visible by staining, and usually alternating light and dark." [SO:ma]	489909	SOFA	SOFA	sequence	1	SO	chromosome_part	chromosome_band
SO:0000340	SO:0000830	SOFA	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000341	"A cytologically distinguishable feature of a chromosome, often made visible by staining, and usually alternating light and dark." [SO:ma]	1072358	SOFA	SOFA	sequence	2	SO	chromosome	chromosome_band
SO:0001411	SO:0000830	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000341	"A cytologically distinguishable feature of a chromosome, often made visible by staining, and usually alternating light and dark." [SO:ma]	1072359	SOFA	SOFA	sequence	2	SO	biological_region	chromosome_band
SO:0001235	SO:0000340	SOFA	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000341	"A cytologically distinguishable feature of a chromosome, often made visible by staining, and usually alternating light and dark." [SO:ma]	1903393	SOFA	SOFA	sequence	3	SO	replicon	chromosome_band
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000341	"A cytologically distinguishable feature of a chromosome, often made visible by staining, and usually alternating light and dark." [SO:ma]	4001258	SOFA	SOFA	sequence	5	SO	region	chromosome_band
SO:0001411	SO:0001235	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000341	"A cytologically distinguishable feature of a chromosome, often made visible by staining, and usually alternating light and dark." [SO:ma]	2927870	SOFA	SOFA	sequence	4	SO	biological_region	chromosome_band
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000341	"A cytologically distinguishable feature of a chromosome, often made visible by staining, and usually alternating light and dark." [SO:ma]	4132286	SOFA	SOFA	sequence	6	SO	sequence_feature	chromosome_band
SO:0000342	\N	\N	"" []	SO:0000342	"" []	45299	\N	\N	sequence	0	SO	site_specific_recombination_target_region	site_specific_recombination_target_region
SO:0000299	SO:0000342	\N	"" []	SO:0000342	"" []	489910	\N	\N	sequence	1	SO	specific_recombination_site	site_specific_recombination_target_region
SO:0000669	SO:0000299	\N	"" []	SO:0000342	"" []	1072360	\N	\N	sequence	2	SO	sequence_rearrangement_feature	site_specific_recombination_target_region
SO:0000298	SO:0000669	\N	"" []	SO:0000342	"" []	1903395	\N	\N	sequence	3	SO	recombination_feature	site_specific_recombination_target_region
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000342	"" []	2927872	\N	SOFA	sequence	4	SO	biological_region	site_specific_recombination_target_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000342	"" []	4001259	SOFA	SOFA	sequence	5	SO	region	site_specific_recombination_target_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000342	"" []	4965853	SOFA	SOFA	sequence	6	SO	sequence_feature	site_specific_recombination_target_region
SO:0000343	\N	SOFA	"A region of sequence, aligned to another sequence with some statistical significance, using an algorithm such as BLAST or SIM4." [SO:ke]	SO:0000343	"A region of sequence, aligned to another sequence with some statistical significance, using an algorithm such as BLAST or SIM4." [SO:ke]	45300	\N	SOFA	sequence	0	SO	match	match
SO:0001410	SO:0000343	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000343	"A region of sequence, aligned to another sequence with some statistical significance, using an algorithm such as BLAST or SIM4." [SO:ke]	489911	SOFA	SOFA	sequence	1	SO	experimental_feature	match
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000343	"A region of sequence, aligned to another sequence with some statistical significance, using an algorithm such as BLAST or SIM4." [SO:ke]	1072361	SOFA	SOFA	sequence	2	SO	region	match
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000343	"A region of sequence, aligned to another sequence with some statistical significance, using an algorithm such as BLAST or SIM4." [SO:ke]	1903396	SOFA	SOFA	sequence	3	SO	sequence_feature	match
SO:0000344	\N	SOFA	"Region of a transcript that regulates splicing." [SO:ke]	SO:0000344	"Region of a transcript that regulates splicing." [SO:ke]	45301	\N	SOFA	sequence	0	SO	splice_enhancer	splice_enhancer
SO:0000165	SO:0000344	SOFA	"A cis-acting sequence that increases the utilization of (some) eukaryotic promoters, and can function in either orientation and in any location (upstream or downstream) relative to the promoter." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000344	"Region of a transcript that regulates splicing." [SO:ke]	489912	SOFA	SOFA	sequence	1	SO	enhancer	splice_enhancer
SO:0001056	SO:0000344	SOFA	"A regulatory_region that modulates splicing." [SO:ke]	SO:0000344	"Region of a transcript that regulates splicing." [SO:ke]	489913	SOFA	SOFA	sequence	1	SO	splicing_regulatory_region	splice_enhancer
SO:0000727	SO:0000165	SOFA	"A regulatory region where transcription factor binding sites clustered to regulate various aspects of transcription activities. (CRMs can be located a few kb to hundred kb upstream of the basal promoter, in the coding sequence, within introns, or in the downstream 3'UTR sequences, as well as on different chromosome). A single gene can be regulated by multiple CRMs to give precise control of its spatial and temporal expression. CRMs function as nodes in large, intertwined regulatory network." [PMID:19660565, SO:SG]	SO:0000344	"Region of a transcript that regulates splicing." [SO:ke]	1072362	SOFA	SOFA	sequence	2	SO	CRM	splice_enhancer
SO:0001679	SO:0001056	SOFA	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000344	"Region of a transcript that regulates splicing." [SO:ke]	1072363	SOFA	SOFA	sequence	2	SO	transcription_regulatory_region	splice_enhancer
SO:0001055	SO:0000727	SOFA	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0000344	"Region of a transcript that regulates splicing." [SO:ke]	1903397	SOFA	SOFA	sequence	3	SO	transcriptional_cis_regulatory_region	splice_enhancer
SO:0005836	SO:0001679	SOFA	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000344	"Region of a transcript that regulates splicing." [SO:ke]	4001260	SOFA	SOFA	sequence	5	SO	regulatory_region	splice_enhancer
SO:0001679	SO:0001055	SOFA	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000344	"Region of a transcript that regulates splicing." [SO:ke]	2927873	SOFA	SOFA	sequence	4	SO	transcription_regulatory_region	splice_enhancer
SO:0000831	SO:0005836	SOFA	"A region of a gene." [SO:ke]	SO:0000344	"Region of a transcript that regulates splicing." [SO:ke]	4132287	SOFA	SOFA	sequence	6	SO	gene_member_region	splice_enhancer
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000344	"Region of a transcript that regulates splicing." [SO:ke]	5180675	SOFA	SOFA	sequence	7	SO	biological_region	splice_enhancer
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000344	"Region of a transcript that regulates splicing." [SO:ke]	5996375	SOFA	SOFA	sequence	8	SO	region	splice_enhancer
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000344	"Region of a transcript that regulates splicing." [SO:ke]	6550248	SOFA	SOFA	sequence	9	SO	sequence_feature	splice_enhancer
SO:0000345	\N	SOFA	"A tag produced from a single sequencing read from a cDNA clone or PCR product; typically a few hundred base pairs long." [SO:ke]	SO:0000345	"A tag produced from a single sequencing read from a cDNA clone or PCR product; typically a few hundred base pairs long." [SO:ke]	45302	\N	SOFA	sequence	0	SO	EST	EST
SO:0000324	SO:0000345	SOFA	"A nucleotide sequence that may be used to identify a larger sequence." [SO:ke]	SO:0000345	"A tag produced from a single sequencing read from a cDNA clone or PCR product; typically a few hundred base pairs long." [SO:ke]	489914	SOFA	SOFA	sequence	1	SO	tag	EST
SO:0000696	SO:0000324	SOFA	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0000345	"A tag produced from a single sequencing read from a cDNA clone or PCR product; typically a few hundred base pairs long." [SO:ke]	1072364	SOFA	SOFA	sequence	2	SO	oligo	EST
SO:0000695	SO:0000696	SOFA	"A sequence used in experiment." [SO:ke]	SO:0000345	"A tag produced from a single sequencing read from a cDNA clone or PCR product; typically a few hundred base pairs long." [SO:ke]	1903399	SOFA	SOFA	sequence	3	SO	reagent	EST
SO:0001409	SO:0000695	SOFA	"A region which is intended for use in an experiment." [SO:cb]	SO:0000345	"A tag produced from a single sequencing read from a cDNA clone or PCR product; typically a few hundred base pairs long." [SO:ke]	2927875	SOFA	SOFA	sequence	4	SO	biomaterial_region	EST
SO:0000001	SO:0001409	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000345	"A tag produced from a single sequencing read from a cDNA clone or PCR product; typically a few hundred base pairs long." [SO:ke]	4001262	SOFA	SOFA	sequence	5	SO	region	EST
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000345	"A tag produced from a single sequencing read from a cDNA clone or PCR product; typically a few hundred base pairs long." [SO:ke]	4965855	SOFA	SOFA	sequence	6	SO	sequence_feature	EST
SO:0000346	\N	\N	"" []	SO:0000346	"" []	45303	\N	\N	sequence	0	SO	loxP_site	loxP_site
SO:0000947	SO:0000346	\N	"A region specifically recognized by a recombinase, which separates a physically contiguous circle of DNA into two physically separate circles." [SO:as]	SO:0000346	"" []	489915	\N	\N	sequence	1	SO	resolution_site	loxP_site
SO:0000342	SO:0000947	\N	"" []	SO:0000346	"" []	1072365	\N	\N	sequence	2	SO	site_specific_recombination_target_region	loxP_site
SO:0000299	SO:0000342	\N	"" []	SO:0000346	"" []	1903400	\N	\N	sequence	3	SO	specific_recombination_site	loxP_site
SO:0000669	SO:0000299	\N	"" []	SO:0000346	"" []	2927876	\N	\N	sequence	4	SO	sequence_rearrangement_feature	loxP_site
SO:0000298	SO:0000669	\N	"" []	SO:0000346	"" []	4001263	\N	\N	sequence	5	SO	recombination_feature	loxP_site
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000346	"" []	4965856	\N	SOFA	sequence	6	SO	biological_region	loxP_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000346	"" []	5740831	SOFA	SOFA	sequence	7	SO	region	loxP_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000346	"" []	6310809	SOFA	SOFA	sequence	8	SO	sequence_feature	loxP_site
SO:0000347	\N	SOFA	"A match against a nucleotide sequence." [SO:ke]	SO:0000347	"A match against a nucleotide sequence." [SO:ke]	45304	\N	SOFA	sequence	0	SO	nucleotide_match	nucleotide_match
SO:0000343	SO:0000347	SOFA	"A region of sequence, aligned to another sequence with some statistical significance, using an algorithm such as BLAST or SIM4." [SO:ke]	SO:0000347	"A match against a nucleotide sequence." [SO:ke]	489916	SOFA	SOFA	sequence	1	SO	match	nucleotide_match
SO:0001410	SO:0000343	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000347	"A match against a nucleotide sequence." [SO:ke]	1072366	SOFA	SOFA	sequence	2	SO	experimental_feature	nucleotide_match
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000347	"A match against a nucleotide sequence." [SO:ke]	1903401	SOFA	SOFA	sequence	3	SO	region	nucleotide_match
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000347	"A match against a nucleotide sequence." [SO:ke]	2927877	SOFA	SOFA	sequence	4	SO	sequence_feature	nucleotide_match
SO:0000348	\N	\N	"An attribute describing a sequence consisting of nucleobases bound to repeating units. The forms found in nature are deoxyribonucleic acid (DNA), where the repeating units are 2-deoxy-D-ribose rings connected to a phosphate backbone, and ribonucleic acid (RNA), where the repeating units are D-ribose rings connected to a phosphate backbone." [CHEBI:33696, RSC:cb]	SO:0000348	"An attribute describing a sequence consisting of nucleobases bound to repeating units. The forms found in nature are deoxyribonucleic acid (DNA), where the repeating units are 2-deoxy-D-ribose rings connected to a phosphate backbone, and ribonucleic acid (RNA), where the repeating units are D-ribose rings connected to a phosphate backbone." [CHEBI:33696, RSC:cb]	45305	\N	\N	sequence	0	SO	nucleic_acid	nucleic_acid
SO:0000443	SO:0000348	\N	"An attribute to describe the kind of biological sequence." [SO:ke]	SO:0000348	"An attribute describing a sequence consisting of nucleobases bound to repeating units. The forms found in nature are deoxyribonucleic acid (DNA), where the repeating units are 2-deoxy-D-ribose rings connected to a phosphate backbone, and ribonucleic acid (RNA), where the repeating units are D-ribose rings connected to a phosphate backbone." [CHEBI:33696, RSC:cb]	489917	\N	\N	sequence	1	SO	polymer_attribute	nucleic_acid
SO:0000400	SO:0000443	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000348	"An attribute describing a sequence consisting of nucleobases bound to repeating units. The forms found in nature are deoxyribonucleic acid (DNA), where the repeating units are 2-deoxy-D-ribose rings connected to a phosphate backbone, and ribonucleic acid (RNA), where the repeating units are D-ribose rings connected to a phosphate backbone." [CHEBI:33696, RSC:cb]	1072367	\N	\N	sequence	2	SO	sequence_attribute	nucleic_acid
SO:0000349	\N	SOFA	"A match against a protein sequence." [SO:ke]	SO:0000349	"A match against a protein sequence." [SO:ke]	45306	\N	SOFA	sequence	0	SO	protein_match	protein_match
SO:0000343	SO:0000349	SOFA	"A region of sequence, aligned to another sequence with some statistical significance, using an algorithm such as BLAST or SIM4." [SO:ke]	SO:0000349	"A match against a protein sequence." [SO:ke]	489918	SOFA	SOFA	sequence	1	SO	match	protein_match
SO:0001410	SO:0000343	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000349	"A match against a protein sequence." [SO:ke]	1072368	SOFA	SOFA	sequence	2	SO	experimental_feature	protein_match
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000349	"A match against a protein sequence." [SO:ke]	1903402	SOFA	SOFA	sequence	3	SO	region	protein_match
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000349	"A match against a protein sequence." [SO:ke]	2927878	SOFA	SOFA	sequence	4	SO	sequence_feature	protein_match
SO:0000350	\N	\N	"An inversion site found on the Saccharomyces cerevisiae 2 micron plasmid." [SO:ma]	SO:0000350	"An inversion site found on the Saccharomyces cerevisiae 2 micron plasmid." [SO:ma]	45307	\N	\N	sequence	0	SO	FRT_site	FRT_site
SO:0000948	SO:0000350	\N	"A region specifically recognised by a recombinase, which inverts the region flanked by a pair of sites." [SO:ma]	SO:0000350	"An inversion site found on the Saccharomyces cerevisiae 2 micron plasmid." [SO:ma]	489919	\N	\N	sequence	1	SO	inversion_site	FRT_site
SO:0000342	SO:0000948	\N	"" []	SO:0000350	"An inversion site found on the Saccharomyces cerevisiae 2 micron plasmid." [SO:ma]	1072369	\N	\N	sequence	2	SO	site_specific_recombination_target_region	FRT_site
SO:0000299	SO:0000342	\N	"" []	SO:0000350	"An inversion site found on the Saccharomyces cerevisiae 2 micron plasmid." [SO:ma]	1903403	\N	\N	sequence	3	SO	specific_recombination_site	FRT_site
SO:0000669	SO:0000299	\N	"" []	SO:0000350	"An inversion site found on the Saccharomyces cerevisiae 2 micron plasmid." [SO:ma]	2927879	\N	\N	sequence	4	SO	sequence_rearrangement_feature	FRT_site
SO:0000298	SO:0000669	\N	"" []	SO:0000350	"An inversion site found on the Saccharomyces cerevisiae 2 micron plasmid." [SO:ma]	4001264	\N	\N	sequence	5	SO	recombination_feature	FRT_site
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000350	"An inversion site found on the Saccharomyces cerevisiae 2 micron plasmid." [SO:ma]	4965857	\N	SOFA	sequence	6	SO	biological_region	FRT_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000350	"An inversion site found on the Saccharomyces cerevisiae 2 micron plasmid." [SO:ma]	5740832	SOFA	SOFA	sequence	7	SO	region	FRT_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000350	"An inversion site found on the Saccharomyces cerevisiae 2 micron plasmid." [SO:ma]	6310810	SOFA	SOFA	sequence	8	SO	sequence_feature	FRT_site
SO:0000351	\N	\N	"An attribute to decide a sequence of nucleotides, nucleotide analogs, or amino acids that has been designed by an experimenter and which may, or may not, correspond with any natural sequence." [SO:ma]	SO:0000351	"An attribute to decide a sequence of nucleotides, nucleotide analogs, or amino acids that has been designed by an experimenter and which may, or may not, correspond with any natural sequence." [SO:ma]	45308	\N	\N	sequence	0	SO	synthetic_sequence	synthetic_sequence
SO:0000443	SO:0000351	\N	"An attribute to describe the kind of biological sequence." [SO:ke]	SO:0000351	"An attribute to decide a sequence of nucleotides, nucleotide analogs, or amino acids that has been designed by an experimenter and which may, or may not, correspond with any natural sequence." [SO:ma]	489920	\N	\N	sequence	1	SO	polymer_attribute	synthetic_sequence
SO:0000400	SO:0000443	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000351	"An attribute to decide a sequence of nucleotides, nucleotide analogs, or amino acids that has been designed by an experimenter and which may, or may not, correspond with any natural sequence." [SO:ma]	1072370	\N	\N	sequence	2	SO	sequence_attribute	synthetic_sequence
SO:0000352	\N	\N	"An attribute describing a sequence consisting of nucleobases bound to a repeating unit made of a 2-deoxy-D-ribose ring connected to a phosphate backbone." [RSC:cb]	SO:0000352	"An attribute describing a sequence consisting of nucleobases bound to a repeating unit made of a 2-deoxy-D-ribose ring connected to a phosphate backbone." [RSC:cb]	45309	\N	\N	sequence	0	SO	DNA	DNA
SO:0000348	SO:0000352	\N	"An attribute describing a sequence consisting of nucleobases bound to repeating units. The forms found in nature are deoxyribonucleic acid (DNA), where the repeating units are 2-deoxy-D-ribose rings connected to a phosphate backbone, and ribonucleic acid (RNA), where the repeating units are D-ribose rings connected to a phosphate backbone." [CHEBI:33696, RSC:cb]	SO:0000352	"An attribute describing a sequence consisting of nucleobases bound to a repeating unit made of a 2-deoxy-D-ribose ring connected to a phosphate backbone." [RSC:cb]	489921	\N	\N	sequence	1	SO	nucleic_acid	DNA
SO:0000443	SO:0000348	\N	"An attribute to describe the kind of biological sequence." [SO:ke]	SO:0000352	"An attribute describing a sequence consisting of nucleobases bound to a repeating unit made of a 2-deoxy-D-ribose ring connected to a phosphate backbone." [RSC:cb]	1072371	\N	\N	sequence	2	SO	polymer_attribute	DNA
SO:0000400	SO:0000443	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000352	"An attribute describing a sequence consisting of nucleobases bound to a repeating unit made of a 2-deoxy-D-ribose ring connected to a phosphate backbone." [RSC:cb]	1903404	\N	\N	sequence	3	SO	sequence_attribute	DNA
SO:0000353	\N	SOFA	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0000353	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	45310	\N	SOFA	sequence	0	SO	sequence_assembly	sequence_assembly
SO:0001248	SO:0000353	SOFA	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0000353	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	489922	SOFA	SOFA	sequence	1	SO	assembly	sequence_assembly
SO:0001410	SO:0001248	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000353	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	1072372	SOFA	SOFA	sequence	2	SO	experimental_feature	sequence_assembly
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000353	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	1903405	SOFA	SOFA	sequence	3	SO	region	sequence_assembly
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000353	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	2927880	SOFA	SOFA	sequence	4	SO	sequence_feature	sequence_assembly
SO:0000354	\N	\N	"A region of intronic nucleotide sequence targeted by a nuclease enzyme." [SO:ke]	SO:0000354	"A region of intronic nucleotide sequence targeted by a nuclease enzyme." [SO:ke]	45311	\N	\N	sequence	0	SO	group_1_intron_homing_endonuclease_target_region	group_1_intron_homing_endonuclease_target_region
SO:0000684	SO:0000354	\N	"A region of nucleotide sequence targeted by a nuclease enzyme." [SO:ma]	SO:0000354	"A region of intronic nucleotide sequence targeted by a nuclease enzyme." [SO:ke]	489923	\N	SOFA	sequence	1	SO	nuclease_sensitive_site	group_1_intron_homing_endonuclease_target_region
SO:0000059	SO:0000684	\N	"A binding site that, of a nucleotide molecule, that interacts selectively and non-covalently with polypeptide residues of a nuclease." [SO:cb]	SO:0000354	"A region of intronic nucleotide sequence targeted by a nuclease enzyme." [SO:ke]	1072373	SOFA	SOFA	sequence	2	SO	nuclease_binding_site	group_1_intron_homing_endonuclease_target_region
SO:0001654	SO:0000059	\N	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	SO:0000354	"A region of intronic nucleotide sequence targeted by a nuclease enzyme." [SO:ke]	1903406	SOFA	SOFA	sequence	3	SO	nucleotide_to_protein_binding_site	group_1_intron_homing_endonuclease_target_region
SO:0000410	SO:0001654	\N	"A binding site that, in the molecule, interacts selectively and non-covalently with polypeptide molecules." [SO:ke]	SO:0000354	"A region of intronic nucleotide sequence targeted by a nuclease enzyme." [SO:ke]	2927881	SOFA	SOFA	sequence	4	SO	protein_binding_site	group_1_intron_homing_endonuclease_target_region
SO:0000409	SO:0000410	\N	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0000354	"A region of intronic nucleotide sequence targeted by a nuclease enzyme." [SO:ke]	4001265	SOFA	biosapiens,SOFA	sequence	5	SO	binding_site	group_1_intron_homing_endonuclease_target_region
SO:0001411	SO:0000409	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000354	"A region of intronic nucleotide sequence targeted by a nuclease enzyme." [SO:ke]	4965858	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	group_1_intron_homing_endonuclease_target_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000354	"A region of intronic nucleotide sequence targeted by a nuclease enzyme." [SO:ke]	5740833	SOFA	SOFA	sequence	7	SO	region	group_1_intron_homing_endonuclease_target_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000354	"A region of intronic nucleotide sequence targeted by a nuclease enzyme." [SO:ke]	6310811	SOFA	SOFA	sequence	8	SO	sequence_feature	group_1_intron_homing_endonuclease_target_region
SO:0000355	\N	\N	"A region of the genome which is co-inherited as the result of the lack of historic recombination within it." [SO:ma]	SO:0000355	"A region of the genome which is co-inherited as the result of the lack of historic recombination within it." [SO:ma]	45312	\N	\N	sequence	0	SO	haplotype_block	haplotype_block
SO:0000298	SO:0000355	\N	"" []	SO:0000355	"A region of the genome which is co-inherited as the result of the lack of historic recombination within it." [SO:ma]	489924	\N	\N	sequence	1	SO	recombination_feature	haplotype_block
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000355	"A region of the genome which is co-inherited as the result of the lack of historic recombination within it." [SO:ma]	1072374	\N	SOFA	sequence	2	SO	biological_region	haplotype_block
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000355	"A region of the genome which is co-inherited as the result of the lack of historic recombination within it." [SO:ma]	1903407	SOFA	SOFA	sequence	3	SO	region	haplotype_block
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000355	"A region of the genome which is co-inherited as the result of the lack of historic recombination within it." [SO:ma]	2927882	SOFA	SOFA	sequence	4	SO	sequence_feature	haplotype_block
SO:0000356	\N	\N	"An attribute describing a sequence consisting of nucleobases bound to a repeating unit made of a D-ribose ring connected to a phosphate backbone." [RSC:cb]	SO:0000356	"An attribute describing a sequence consisting of nucleobases bound to a repeating unit made of a D-ribose ring connected to a phosphate backbone." [RSC:cb]	45313	\N	\N	sequence	0	SO	RNA	RNA
SO:0000348	SO:0000356	\N	"An attribute describing a sequence consisting of nucleobases bound to repeating units. The forms found in nature are deoxyribonucleic acid (DNA), where the repeating units are 2-deoxy-D-ribose rings connected to a phosphate backbone, and ribonucleic acid (RNA), where the repeating units are D-ribose rings connected to a phosphate backbone." [CHEBI:33696, RSC:cb]	SO:0000356	"An attribute describing a sequence consisting of nucleobases bound to a repeating unit made of a D-ribose ring connected to a phosphate backbone." [RSC:cb]	489925	\N	\N	sequence	1	SO	nucleic_acid	RNA
SO:0000443	SO:0000348	\N	"An attribute to describe the kind of biological sequence." [SO:ke]	SO:0000356	"An attribute describing a sequence consisting of nucleobases bound to a repeating unit made of a D-ribose ring connected to a phosphate backbone." [RSC:cb]	1072375	\N	\N	sequence	2	SO	polymer_attribute	RNA
SO:0000400	SO:0000443	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000356	"An attribute describing a sequence consisting of nucleobases bound to a repeating unit made of a D-ribose ring connected to a phosphate backbone." [RSC:cb]	1903408	\N	\N	sequence	3	SO	sequence_attribute	RNA
SO:0000357	\N	\N	"An attribute describing a region that is bounded either side by a particular kind of region." [SO:ke]	SO:0000357	"An attribute describing a region that is bounded either side by a particular kind of region." [SO:ke]	45314	\N	\N	sequence	0	SO	flanked	flanked
SO:0000733	SO:0000357	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000357	"An attribute describing a region that is bounded either side by a particular kind of region." [SO:ke]	489926	\N	\N	sequence	1	SO	feature_attribute	flanked
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000357	"An attribute describing a region that is bounded either side by a particular kind of region." [SO:ke]	1072376	\N	\N	sequence	2	SO	sequence_attribute	flanked
SO:0000359	\N	\N	"An attribute describing sequence that is flanked by Lox-P sites." [SO:ke]	SO:0000359	"An attribute describing sequence that is flanked by Lox-P sites." [SO:ke]	45315	\N	\N	sequence	0	SO	floxed	floxed
SO:0000357	SO:0000359	\N	"An attribute describing a region that is bounded either side by a particular kind of region." [SO:ke]	SO:0000359	"An attribute describing sequence that is flanked by Lox-P sites." [SO:ke]	489927	\N	\N	sequence	1	SO	flanked	floxed
SO:0000733	SO:0000357	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000359	"An attribute describing sequence that is flanked by Lox-P sites." [SO:ke]	1072377	\N	\N	sequence	2	SO	feature_attribute	floxed
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000359	"An attribute describing sequence that is flanked by Lox-P sites." [SO:ke]	1903409	\N	\N	sequence	3	SO	sequence_attribute	floxed
SO:0000360	\N	SOFA	"A set of (usually) three nucleotide bases in a DNA or RNA sequence, which together code for a unique amino acid or the termination of translation and are contained within the CDS." [SO:ke]	SO:0000360	"A set of (usually) three nucleotide bases in a DNA or RNA sequence, which together code for a unique amino acid or the termination of translation and are contained within the CDS." [SO:ke]	45316	\N	SOFA	sequence	0	SO	codon	codon
SO:0000851	SO:0000360	SOFA	"A region of a CDS." [SO:cb]	SO:0000360	"A set of (usually) three nucleotide bases in a DNA or RNA sequence, which together code for a unique amino acid or the termination of translation and are contained within the CDS." [SO:ke]	489928	SOFA	SOFA	sequence	1	SO	CDS_region	codon
SO:0000316	SO:0000851	SOFA	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	SO:0000360	"A set of (usually) three nucleotide bases in a DNA or RNA sequence, which together code for a unique amino acid or the termination of translation and are contained within the CDS." [SO:ke]	1072378	SOFA	SOFA	sequence	2	SO	CDS	codon
SO:0000836	SO:0000851	SOFA	"A region of an mRNA." [SO:cb]	SO:0000360	"A set of (usually) three nucleotide bases in a DNA or RNA sequence, which together code for a unique amino acid or the termination of translation and are contained within the CDS." [SO:ke]	1072379	SOFA	SOFA	sequence	2	SO	mRNA_region	codon
SO:0000836	SO:0000316	SOFA	"A region of an mRNA." [SO:cb]	SO:0000360	"A set of (usually) three nucleotide bases in a DNA or RNA sequence, which together code for a unique amino acid or the termination of translation and are contained within the CDS." [SO:ke]	1903410	SOFA	SOFA	sequence	3	SO	mRNA_region	codon
SO:0000234	SO:0000836	SOFA	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000360	"A set of (usually) three nucleotide bases in a DNA or RNA sequence, which together code for a unique amino acid or the termination of translation and are contained within the CDS." [SO:ke]	2927883	SOFA	SOFA	sequence	4	SO	mRNA	codon
SO:0000834	SO:0000836	SOFA	"A region of a mature transcript." [SO:ke]	SO:0000360	"A set of (usually) three nucleotide bases in a DNA or RNA sequence, which together code for a unique amino acid or the termination of translation and are contained within the CDS." [SO:ke]	2927884	SOFA	SOFA	sequence	4	SO	mature_transcript_region	codon
SO:0000233	SO:0000234	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000360	"A set of (usually) three nucleotide bases in a DNA or RNA sequence, which together code for a unique amino acid or the termination of translation and are contained within the CDS." [SO:ke]	3173871	SOFA	SOFA	sequence	5	SO	mature_transcript	codon
SO:0000833	SO:0000834	SOFA	"A region of a transcript." [SO:ke]	SO:0000360	"A set of (usually) three nucleotide bases in a DNA or RNA sequence, which together code for a unique amino acid or the termination of translation and are contained within the CDS." [SO:ke]	3173872	SOFA	SOFA	sequence	5	SO	transcript_region	codon
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000360	"A set of (usually) three nucleotide bases in a DNA or RNA sequence, which together code for a unique amino acid or the termination of translation and are contained within the CDS." [SO:ke]	4385725	SOFA	SOFA	sequence	6	SO	transcript	codon
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000360	"A set of (usually) three nucleotide bases in a DNA or RNA sequence, which together code for a unique amino acid or the termination of translation and are contained within the CDS." [SO:ke]	4385726	SOFA	SOFA	sequence	6	SO	transcript	codon
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000360	"A set of (usually) three nucleotide bases in a DNA or RNA sequence, which together code for a unique amino acid or the termination of translation and are contained within the CDS." [SO:ke]	4385727	SOFA	SOFA	sequence	6	SO	biological_region	codon
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000360	"A set of (usually) three nucleotide bases in a DNA or RNA sequence, which together code for a unique amino acid or the termination of translation and are contained within the CDS." [SO:ke]	5407390	SOFA	SOFA	sequence	7	SO	gene_member_region	codon
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000360	"A set of (usually) three nucleotide bases in a DNA or RNA sequence, which together code for a unique amino acid or the termination of translation and are contained within the CDS." [SO:ke]	6631377	SOFA	SOFA	sequence	9	SO	region	codon
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000360	"A set of (usually) three nucleotide bases in a DNA or RNA sequence, which together code for a unique amino acid or the termination of translation and are contained within the CDS." [SO:ke]	6146618	SOFA	SOFA	sequence	8	SO	biological_region	codon
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000360	"A set of (usually) three nucleotide bases in a DNA or RNA sequence, which together code for a unique amino acid or the termination of translation and are contained within the CDS." [SO:ke]	6848176	SOFA	SOFA	sequence	10	SO	sequence_feature	codon
SO:0000361	\N	\N	"An attribute to describe sequence that is flanked by the FLP recombinase recognition site, FRT." [SO:ke]	SO:0000361	"An attribute to describe sequence that is flanked by the FLP recombinase recognition site, FRT." [SO:ke]	45317	\N	\N	sequence	0	SO	FRT_flanked	FRT_flanked
SO:0000357	SO:0000361	\N	"An attribute describing a region that is bounded either side by a particular kind of region." [SO:ke]	SO:0000361	"An attribute to describe sequence that is flanked by the FLP recombinase recognition site, FRT." [SO:ke]	489929	\N	\N	sequence	1	SO	flanked	FRT_flanked
SO:0000733	SO:0000357	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000361	"An attribute to describe sequence that is flanked by the FLP recombinase recognition site, FRT." [SO:ke]	1072380	\N	\N	sequence	2	SO	feature_attribute	FRT_flanked
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000361	"An attribute to describe sequence that is flanked by the FLP recombinase recognition site, FRT." [SO:ke]	1903413	\N	\N	sequence	3	SO	sequence_attribute	FRT_flanked
SO:0000362	\N	\N	"A cDNA clone constructed from more than one mRNA. Usually an experimental artifact." [SO:ma]	SO:0000362	"A cDNA clone constructed from more than one mRNA. Usually an experimental artifact." [SO:ma]	45318	\N	\N	sequence	0	SO	invalidated_by_chimeric_cDNA	invalidated_by_chimeric_cDNA
SO:0000790	SO:0000362	\N	"An attribute describing a feature that is invalidated." [SO:ke]	SO:0000362	"A cDNA clone constructed from more than one mRNA. Usually an experimental artifact." [SO:ma]	489930	\N	\N	sequence	1	SO	invalidated	invalidated_by_chimeric_cDNA
SO:0000905	SO:0000790	\N	"An attribute describing the status of a feature, based on the available evidence." [SO:ke]	SO:0000362	"A cDNA clone constructed from more than one mRNA. Usually an experimental artifact." [SO:ma]	1072381	\N	\N	sequence	2	SO	status	invalidated_by_chimeric_cDNA
SO:0000733	SO:0000905	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000362	"A cDNA clone constructed from more than one mRNA. Usually an experimental artifact." [SO:ma]	1903414	\N	\N	sequence	3	SO	feature_attribute	invalidated_by_chimeric_cDNA
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000362	"A cDNA clone constructed from more than one mRNA. Usually an experimental artifact." [SO:ma]	2927887	\N	\N	sequence	4	SO	sequence_attribute	invalidated_by_chimeric_cDNA
SO:0000363	\N	\N	"A transgene that is floxed." [SO:xp]	SO:0000363	"A transgene that is floxed." [SO:xp]	45319	\N	\N	sequence	0	SO	floxed_gene	floxed_gene
SO:0000902	SO:0000363	\N	"A transgene is a gene that has been transferred naturally or by any of a number of genetic engineering techniques from one organism to another." [SO:xp]	SO:0000363	"A transgene that is floxed." [SO:xp]	489931	\N	\N	sequence	1	SO	transgene	floxed_gene
SO:0000704	SO:0000902	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000363	"A transgene that is floxed." [SO:xp]	1072382	\N	SOFA	sequence	2	SO	gene	floxed_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000363	"A transgene that is floxed." [SO:xp]	1903415	SOFA	SOFA	sequence	3	SO	biological_region	floxed_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000363	"A transgene that is floxed." [SO:xp]	2927888	SOFA	SOFA	sequence	4	SO	region	floxed_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000363	"A transgene that is floxed." [SO:xp]	4001269	SOFA	SOFA	sequence	5	SO	sequence_feature	floxed_gene
SO:0000364	\N	\N	"The region of sequence surrounding a transposable element." [SO:ke]	SO:0000364	"The region of sequence surrounding a transposable element." [SO:ke]	45320	\N	\N	sequence	0	SO	transposable_element_flanking_region	transposable_element_flanking_region
SO:0000239	SO:0000364	\N	"The sequences extending on either side of a specific region." [SO:ke]	SO:0000364	"The region of sequence surrounding a transposable element." [SO:ke]	489932	\N	SOFA	sequence	1	SO	flanking_region	transposable_element_flanking_region
SO:0001412	SO:0000239	\N	"A region that is defined according to its relations with other regions within the same sequence." [SO:cb]	SO:0000364	"The region of sequence surrounding a transposable element." [SO:ke]	1072383	SOFA	SOFA	sequence	2	SO	topologically_defined_region	transposable_element_flanking_region
SO:0000001	SO:0001412	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000364	"The region of sequence surrounding a transposable element." [SO:ke]	1903416	SOFA	SOFA	sequence	3	SO	region	transposable_element_flanking_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000364	"The region of sequence surrounding a transposable element." [SO:ke]	2927889	SOFA	SOFA	sequence	4	SO	sequence_feature	transposable_element_flanking_region
SO:0000365	\N	\N	"A region encoding an integrase which acts at a site adjacent to it (attI_site) to insert DNA which must include but is not limited to an attC_site." [SO:as]	SO:0000365	"A region encoding an integrase which acts at a site adjacent to it (attI_site) to insert DNA which must include but is not limited to an attC_site." [SO:as]	45321	\N	\N	sequence	0	SO	integron	integron
SO:0001039	SO:0000365	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000365	"A region encoding an integrase which acts at a site adjacent to it (attI_site) to insert DNA which must include but is not limited to an attC_site." [SO:as]	489933	\N	SOFA	sequence	1	SO	integrated_mobile_genetic_element	integron
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000365	"A region encoding an integrase which acts at a site adjacent to it (attI_site) to insert DNA which must include but is not limited to an attC_site." [SO:as]	1072384	SOFA	SOFA	sequence	2	SO	mobile_genetic_element	integron
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000365	"A region encoding an integrase which acts at a site adjacent to it (attI_site) to insert DNA which must include but is not limited to an attC_site." [SO:as]	1903417	SOFA	SOFA	sequence	3	SO	biological_region	integron
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000365	"A region encoding an integrase which acts at a site adjacent to it (attI_site) to insert DNA which must include but is not limited to an attC_site." [SO:as]	2927890	SOFA	SOFA	sequence	4	SO	region	integron
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000365	"A region encoding an integrase which acts at a site adjacent to it (attI_site) to insert DNA which must include but is not limited to an attC_site." [SO:as]	4001270	SOFA	SOFA	sequence	5	SO	sequence_feature	integron
SO:0000366	\N	SOFA	"The junction where an insertion occurred." [SO:ke]	SO:0000366	"The junction where an insertion occurred." [SO:ke]	45322	\N	SOFA	sequence	0	SO	insertion_site	insertion_site
SO:0000699	SO:0000366	SOFA	"A sequence_feature with an extent of zero." [SO:ke]	SO:0000366	"The junction where an insertion occurred." [SO:ke]	489934	SOFA	SOFA	sequence	1	SO	junction	insertion_site
SO:0000110	SO:0000699	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000366	"The junction where an insertion occurred." [SO:ke]	1072385	SOFA	SOFA	sequence	2	SO	sequence_feature	insertion_site
SO:0000367	\N	\N	"A region within an integron, adjacent to an integrase, at which site specific recombination involving an attC_site takes place." [SO:as]	SO:0000367	"A region within an integron, adjacent to an integrase, at which site specific recombination involving an attC_site takes place." [SO:as]	45323	\N	\N	sequence	0	SO	attI_site	attI_site
SO:0000365	SO:0000367	\N	"A region encoding an integrase which acts at a site adjacent to it (attI_site) to insert DNA which must include but is not limited to an attC_site." [SO:as]	SO:0000367	"A region within an integron, adjacent to an integrase, at which site specific recombination involving an attC_site takes place." [SO:as]	489935	\N	\N	sequence	1	SO	integron	attI_site
SO:0000946	SO:0000367	\N	"A region specifically recognised by a recombinase, which inserts or removes another region marked by a distinct cognate integration/excision site." [SO:as]	SO:0000367	"A region within an integron, adjacent to an integrase, at which site specific recombination involving an attC_site takes place." [SO:as]	489936	\N	\N	sequence	1	SO	integration_excision_site	attI_site
SO:0001039	SO:0000365	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000367	"A region within an integron, adjacent to an integrase, at which site specific recombination involving an attC_site takes place." [SO:as]	1072386	\N	SOFA	sequence	2	SO	integrated_mobile_genetic_element	attI_site
SO:0000342	SO:0000946	\N	"" []	SO:0000367	"A region within an integron, adjacent to an integrase, at which site specific recombination involving an attC_site takes place." [SO:as]	1072387	\N	\N	sequence	2	SO	site_specific_recombination_target_region	attI_site
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000367	"A region within an integron, adjacent to an integrase, at which site specific recombination involving an attC_site takes place." [SO:as]	1903418	SOFA	SOFA	sequence	3	SO	mobile_genetic_element	attI_site
SO:0000299	SO:0000342	\N	"" []	SO:0000367	"A region within an integron, adjacent to an integrase, at which site specific recombination involving an attC_site takes place." [SO:as]	1903419	\N	\N	sequence	3	SO	specific_recombination_site	attI_site
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000367	"A region within an integron, adjacent to an integrase, at which site specific recombination involving an attC_site takes place." [SO:as]	2927891	SOFA	SOFA	sequence	4	SO	biological_region	attI_site
SO:0000669	SO:0000299	\N	"" []	SO:0000367	"A region within an integron, adjacent to an integrase, at which site specific recombination involving an attC_site takes place." [SO:as]	2927892	\N	\N	sequence	4	SO	sequence_rearrangement_feature	attI_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000367	"A region within an integron, adjacent to an integrase, at which site specific recombination involving an attC_site takes place." [SO:as]	5740836	SOFA	SOFA	sequence	7	SO	region	attI_site
SO:0000298	SO:0000669	\N	"" []	SO:0000367	"A region within an integron, adjacent to an integrase, at which site specific recombination involving an attC_site takes place." [SO:as]	4001272	\N	\N	sequence	5	SO	recombination_feature	attI_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000367	"A region within an integron, adjacent to an integrase, at which site specific recombination involving an attC_site takes place." [SO:as]	5996376	SOFA	SOFA	sequence	8	SO	sequence_feature	attI_site
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000367	"A region within an integron, adjacent to an integrase, at which site specific recombination involving an attC_site takes place." [SO:as]	4965862	\N	SOFA	sequence	6	SO	biological_region	attI_site
SO:0000368	\N	SOFA	"The junction in a genome where a transposable_element has inserted." [SO:ke]	SO:0000368	"The junction in a genome where a transposable_element has inserted." [SO:ke]	45324	\N	SOFA	sequence	0	SO	transposable_element_insertion_site	transposable_element_insertion_site
SO:0000366	SO:0000368	SOFA	"The junction where an insertion occurred." [SO:ke]	SO:0000368	"The junction in a genome where a transposable_element has inserted." [SO:ke]	489937	SOFA	SOFA	sequence	1	SO	insertion_site	transposable_element_insertion_site
SO:0000699	SO:0000366	SOFA	"A sequence_feature with an extent of zero." [SO:ke]	SO:0000368	"The junction in a genome where a transposable_element has inserted." [SO:ke]	1072388	SOFA	SOFA	sequence	2	SO	junction	transposable_element_insertion_site
SO:0000110	SO:0000699	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000368	"The junction in a genome where a transposable_element has inserted." [SO:ke]	1903420	SOFA	SOFA	sequence	3	SO	sequence_feature	transposable_element_insertion_site
SO:0000370	\N	SOFA	"A non-coding RNA less than 200 nucleotides long, usually with a specific secondary structure, that acts to regulate gene expression. These include short ncRNAs such as piRNA, miRNA and siRNAs (among others)." [PMID:28541282, PomBase:al, SO:ma]	SO:0000370	"A non-coding RNA less than 200 nucleotides long, usually with a specific secondary structure, that acts to regulate gene expression. These include short ncRNAs such as piRNA, miRNA and siRNAs (among others)." [PMID:28541282, PomBase:al, SO:ma]	45325	\N	SOFA	sequence	0	SO	small_regulatory_ncRNA	small_regulatory_ncRNA
SO:0000655	SO:0000370	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000370	"A non-coding RNA less than 200 nucleotides long, usually with a specific secondary structure, that acts to regulate gene expression. These include short ncRNAs such as piRNA, miRNA and siRNAs (among others)." [PMID:28541282, PomBase:al, SO:ma]	489938	SOFA	SOFA	sequence	1	SO	ncRNA	small_regulatory_ncRNA
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000370	"A non-coding RNA less than 200 nucleotides long, usually with a specific secondary structure, that acts to regulate gene expression. These include short ncRNAs such as piRNA, miRNA and siRNAs (among others)." [PMID:28541282, PomBase:al, SO:ma]	1072389	SOFA	SOFA	sequence	2	SO	mature_transcript	small_regulatory_ncRNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000370	"A non-coding RNA less than 200 nucleotides long, usually with a specific secondary structure, that acts to regulate gene expression. These include short ncRNAs such as piRNA, miRNA and siRNAs (among others)." [PMID:28541282, PomBase:al, SO:ma]	1903421	SOFA	SOFA	sequence	3	SO	transcript	small_regulatory_ncRNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000370	"A non-coding RNA less than 200 nucleotides long, usually with a specific secondary structure, that acts to regulate gene expression. These include short ncRNAs such as piRNA, miRNA and siRNAs (among others)." [PMID:28541282, PomBase:al, SO:ma]	2927893	SOFA	SOFA	sequence	4	SO	gene_member_region	small_regulatory_ncRNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000370	"A non-coding RNA less than 200 nucleotides long, usually with a specific secondary structure, that acts to regulate gene expression. These include short ncRNAs such as piRNA, miRNA and siRNAs (among others)." [PMID:28541282, PomBase:al, SO:ma]	4001273	SOFA	SOFA	sequence	5	SO	biological_region	small_regulatory_ncRNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000370	"A non-coding RNA less than 200 nucleotides long, usually with a specific secondary structure, that acts to regulate gene expression. These include short ncRNAs such as piRNA, miRNA and siRNAs (among others)." [PMID:28541282, PomBase:al, SO:ma]	4965863	SOFA	SOFA	sequence	6	SO	region	small_regulatory_ncRNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000370	"A non-coding RNA less than 200 nucleotides long, usually with a specific secondary structure, that acts to regulate gene expression. These include short ncRNAs such as piRNA, miRNA and siRNAs (among others)." [PMID:28541282, PomBase:al, SO:ma]	5740837	SOFA	SOFA	sequence	7	SO	sequence_feature	small_regulatory_ncRNA
SO:0000371	\N	\N	"A transposon that encodes function required for conjugation." [http://www.sci.sdsu.edu/~smaloy/Glossary/C.html]	SO:0000371	"A transposon that encodes function required for conjugation." [http://www.sci.sdsu.edu/~smaloy/Glossary/C.html]	45326	\N	\N	sequence	0	SO	conjugative_transposon	conjugative_transposon
SO:0000182	SO:0000371	\N	"A transposon where the mechanism of transposition is via a DNA intermediate." [SO:ke]	SO:0000371	"A transposon that encodes function required for conjugation." [http://www.sci.sdsu.edu/~smaloy/Glossary/C.html]	489939	\N	\N	sequence	1	SO	DNA_transposon	conjugative_transposon
SO:0000101	SO:0000182	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000371	"A transposon that encodes function required for conjugation." [http://www.sci.sdsu.edu/~smaloy/Glossary/C.html]	1072390	\N	SOFA	sequence	2	SO	transposable_element	conjugative_transposon
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000371	"A transposon that encodes function required for conjugation." [http://www.sci.sdsu.edu/~smaloy/Glossary/C.html]	1903422	SOFA	SOFA	sequence	3	SO	integrated_mobile_genetic_element	conjugative_transposon
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000371	"A transposon that encodes function required for conjugation." [http://www.sci.sdsu.edu/~smaloy/Glossary/C.html]	2927894	SOFA	SOFA	sequence	4	SO	mobile_genetic_element	conjugative_transposon
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000371	"A transposon that encodes function required for conjugation." [http://www.sci.sdsu.edu/~smaloy/Glossary/C.html]	4001274	SOFA	SOFA	sequence	5	SO	biological_region	conjugative_transposon
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000371	"A transposon that encodes function required for conjugation." [http://www.sci.sdsu.edu/~smaloy/Glossary/C.html]	4965864	SOFA	SOFA	sequence	6	SO	region	conjugative_transposon
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000371	"A transposon that encodes function required for conjugation." [http://www.sci.sdsu.edu/~smaloy/Glossary/C.html]	5740838	SOFA	SOFA	sequence	7	SO	sequence_feature	conjugative_transposon
SO:0000372	\N	SOFA	"An RNA sequence that has catalytic activity with or without an associated ribonucleoprotein." [RSC:cb]	SO:0000372	"An RNA sequence that has catalytic activity with or without an associated ribonucleoprotein." [RSC:cb]	45327	\N	SOFA	sequence	0	SO	enzymatic_RNA	enzymatic_RNA
SO:0000673	SO:0000372	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000372	"An RNA sequence that has catalytic activity with or without an associated ribonucleoprotein." [RSC:cb]	489940	SOFA	SOFA	sequence	1	SO	transcript	enzymatic_RNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000372	"An RNA sequence that has catalytic activity with or without an associated ribonucleoprotein." [RSC:cb]	1072391	SOFA	SOFA	sequence	2	SO	gene_member_region	enzymatic_RNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000372	"An RNA sequence that has catalytic activity with or without an associated ribonucleoprotein." [RSC:cb]	1903423	SOFA	SOFA	sequence	3	SO	biological_region	enzymatic_RNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000372	"An RNA sequence that has catalytic activity with or without an associated ribonucleoprotein." [RSC:cb]	2927895	SOFA	SOFA	sequence	4	SO	region	enzymatic_RNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000372	"An RNA sequence that has catalytic activity with or without an associated ribonucleoprotein." [RSC:cb]	4001275	SOFA	SOFA	sequence	5	SO	sequence_feature	enzymatic_RNA
SO:0000373	\N	\N	"A recombinationally rearranged gene by inversion." [SO:xp]	SO:0000373	"A recombinationally rearranged gene by inversion." [SO:xp]	45328	\N	\N	sequence	0	SO	recombinationally_inverted_gene	recombinationally_inverted_gene
SO:0000456	SO:0000373	\N	"A gene that is recombinationally rearranged." [SO:ke]	SO:0000373	"A recombinationally rearranged gene by inversion." [SO:xp]	489941	\N	\N	sequence	1	SO	recombinationally_rearranged_gene	recombinationally_inverted_gene
SO:0000704	SO:0000456	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000373	"A recombinationally rearranged gene by inversion." [SO:xp]	1072392	\N	SOFA	sequence	2	SO	gene	recombinationally_inverted_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000373	"A recombinationally rearranged gene by inversion." [SO:xp]	1903424	SOFA	SOFA	sequence	3	SO	biological_region	recombinationally_inverted_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000373	"A recombinationally rearranged gene by inversion." [SO:xp]	2927896	SOFA	SOFA	sequence	4	SO	region	recombinationally_inverted_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000373	"A recombinationally rearranged gene by inversion." [SO:xp]	4001276	SOFA	SOFA	sequence	5	SO	sequence_feature	recombinationally_inverted_gene
SO:0000374	\N	SOFA	"An RNA with catalytic activity." [SO:ma]	SO:0000374	"An RNA with catalytic activity." [SO:ma]	45329	\N	SOFA	sequence	0	SO	ribozyme	ribozyme
SO:0000372	SO:0000374	SOFA	"An RNA sequence that has catalytic activity with or without an associated ribonucleoprotein." [RSC:cb]	SO:0000374	"An RNA with catalytic activity." [SO:ma]	489942	SOFA	SOFA	sequence	1	SO	enzymatic_RNA	ribozyme
SO:0000673	SO:0000372	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000374	"An RNA with catalytic activity." [SO:ma]	1072393	SOFA	SOFA	sequence	2	SO	transcript	ribozyme
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000374	"An RNA with catalytic activity." [SO:ma]	1903425	SOFA	SOFA	sequence	3	SO	gene_member_region	ribozyme
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000374	"An RNA with catalytic activity." [SO:ma]	2927897	SOFA	SOFA	sequence	4	SO	biological_region	ribozyme
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000374	"An RNA with catalytic activity." [SO:ma]	4001277	SOFA	SOFA	sequence	5	SO	region	ribozyme
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000374	"An RNA with catalytic activity." [SO:ma]	4965865	SOFA	SOFA	sequence	6	SO	sequence_feature	ribozyme
SO:0000375	\N	SOFA	"5_8S ribosomal RNA (5. 8S rRNA) is a component of the large subunit of the eukaryotic ribosome. It is transcribed by RNA polymerase I as part of the 45S precursor that also contains 18S and 28S rRNA. Functionally, it is thought that 5.8S rRNA may be involved in ribosome translocation. It is also known to form covalent linkage to the p53 tumour suppressor protein. 5_8S rRNA is also found in archaea." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00002]	SO:0000375	"5_8S ribosomal RNA (5. 8S rRNA) is a component of the large subunit of the eukaryotic ribosome. It is transcribed by RNA polymerase I as part of the 45S precursor that also contains 18S and 28S rRNA. Functionally, it is thought that 5.8S rRNA may be involved in ribosome translocation. It is also known to form covalent linkage to the p53 tumour suppressor protein. 5_8S rRNA is also found in archaea." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00002]	45330	\N	SOFA	sequence	0	SO	rRNA_5_8S	rRNA_5_8S
SO:0000651	SO:0000375	SOFA	"Ribosomal RNA transcript that structures the large subunit of the ribosome." [SO:ke]	SO:0000375	"5_8S ribosomal RNA (5. 8S rRNA) is a component of the large subunit of the eukaryotic ribosome. It is transcribed by RNA polymerase I as part of the 45S precursor that also contains 18S and 28S rRNA. Functionally, it is thought that 5.8S rRNA may be involved in ribosome translocation. It is also known to form covalent linkage to the p53 tumour suppressor protein. 5_8S rRNA is also found in archaea." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00002]	489943	SOFA	SOFA	sequence	1	SO	large_subunit_rRNA	rRNA_5_8S
SO:0000252	SO:0000651	SOFA	"RNA that comprises part of a ribosome, and that can provide both structural scaffolding and catalytic activity." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, ISBN:0198506732]	SO:0000375	"5_8S ribosomal RNA (5. 8S rRNA) is a component of the large subunit of the eukaryotic ribosome. It is transcribed by RNA polymerase I as part of the 45S precursor that also contains 18S and 28S rRNA. Functionally, it is thought that 5.8S rRNA may be involved in ribosome translocation. It is also known to form covalent linkage to the p53 tumour suppressor protein. 5_8S rRNA is also found in archaea." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00002]	1072394	SOFA	SOFA	sequence	2	SO	rRNA	rRNA_5_8S
SO:0000655	SO:0000252	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000375	"5_8S ribosomal RNA (5. 8S rRNA) is a component of the large subunit of the eukaryotic ribosome. It is transcribed by RNA polymerase I as part of the 45S precursor that also contains 18S and 28S rRNA. Functionally, it is thought that 5.8S rRNA may be involved in ribosome translocation. It is also known to form covalent linkage to the p53 tumour suppressor protein. 5_8S rRNA is also found in archaea." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00002]	1903426	SOFA	SOFA	sequence	3	SO	ncRNA	rRNA_5_8S
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000375	"5_8S ribosomal RNA (5. 8S rRNA) is a component of the large subunit of the eukaryotic ribosome. It is transcribed by RNA polymerase I as part of the 45S precursor that also contains 18S and 28S rRNA. Functionally, it is thought that 5.8S rRNA may be involved in ribosome translocation. It is also known to form covalent linkage to the p53 tumour suppressor protein. 5_8S rRNA is also found in archaea." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00002]	2927898	SOFA	SOFA	sequence	4	SO	mature_transcript	rRNA_5_8S
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000375	"5_8S ribosomal RNA (5. 8S rRNA) is a component of the large subunit of the eukaryotic ribosome. It is transcribed by RNA polymerase I as part of the 45S precursor that also contains 18S and 28S rRNA. Functionally, it is thought that 5.8S rRNA may be involved in ribosome translocation. It is also known to form covalent linkage to the p53 tumour suppressor protein. 5_8S rRNA is also found in archaea." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00002]	4001278	SOFA	SOFA	sequence	5	SO	transcript	rRNA_5_8S
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000375	"5_8S ribosomal RNA (5. 8S rRNA) is a component of the large subunit of the eukaryotic ribosome. It is transcribed by RNA polymerase I as part of the 45S precursor that also contains 18S and 28S rRNA. Functionally, it is thought that 5.8S rRNA may be involved in ribosome translocation. It is also known to form covalent linkage to the p53 tumour suppressor protein. 5_8S rRNA is also found in archaea." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00002]	4965866	SOFA	SOFA	sequence	6	SO	gene_member_region	rRNA_5_8S
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000375	"5_8S ribosomal RNA (5. 8S rRNA) is a component of the large subunit of the eukaryotic ribosome. It is transcribed by RNA polymerase I as part of the 45S precursor that also contains 18S and 28S rRNA. Functionally, it is thought that 5.8S rRNA may be involved in ribosome translocation. It is also known to form covalent linkage to the p53 tumour suppressor protein. 5_8S rRNA is also found in archaea." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00002]	5740839	SOFA	SOFA	sequence	7	SO	biological_region	rRNA_5_8S
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000375	"5_8S ribosomal RNA (5. 8S rRNA) is a component of the large subunit of the eukaryotic ribosome. It is transcribed by RNA polymerase I as part of the 45S precursor that also contains 18S and 28S rRNA. Functionally, it is thought that 5.8S rRNA may be involved in ribosome translocation. It is also known to form covalent linkage to the p53 tumour suppressor protein. 5_8S rRNA is also found in archaea." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00002]	6310813	SOFA	SOFA	sequence	8	SO	region	rRNA_5_8S
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000375	"5_8S ribosomal RNA (5. 8S rRNA) is a component of the large subunit of the eukaryotic ribosome. It is transcribed by RNA polymerase I as part of the 45S precursor that also contains 18S and 28S rRNA. Functionally, it is thought that 5.8S rRNA may be involved in ribosome translocation. It is also known to form covalent linkage to the p53 tumour suppressor protein. 5_8S rRNA is also found in archaea." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00002]	6699226	SOFA	SOFA	sequence	9	SO	sequence_feature	rRNA_5_8S
SO:0000376	\N	\N	"A small (184-nt in E. coli) RNA that forms a hairpin type structure. 6S RNA associates with RNA polymerase in a highly specific manner. 6S RNA represses expression from a sigma70-dependent promoter during stationary phase." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00013]	SO:0000376	"A small (184-nt in E. coli) RNA that forms a hairpin type structure. 6S RNA associates with RNA polymerase in a highly specific manner. 6S RNA represses expression from a sigma70-dependent promoter during stationary phase." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00013]	45331	\N	\N	sequence	0	SO	RNA_6S	RNA_6S
SO:0000370	SO:0000376	\N	"A non-coding RNA less than 200 nucleotides long, usually with a specific secondary structure, that acts to regulate gene expression. These include short ncRNAs such as piRNA, miRNA and siRNAs (among others)." [PMID:28541282, PomBase:al, SO:ma]	SO:0000376	"A small (184-nt in E. coli) RNA that forms a hairpin type structure. 6S RNA associates with RNA polymerase in a highly specific manner. 6S RNA represses expression from a sigma70-dependent promoter during stationary phase." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00013]	489944	\N	SOFA	sequence	1	SO	small_regulatory_ncRNA	RNA_6S
SO:0000655	SO:0000370	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000376	"A small (184-nt in E. coli) RNA that forms a hairpin type structure. 6S RNA associates with RNA polymerase in a highly specific manner. 6S RNA represses expression from a sigma70-dependent promoter during stationary phase." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00013]	1072395	SOFA	SOFA	sequence	2	SO	ncRNA	RNA_6S
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000376	"A small (184-nt in E. coli) RNA that forms a hairpin type structure. 6S RNA associates with RNA polymerase in a highly specific manner. 6S RNA represses expression from a sigma70-dependent promoter during stationary phase." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00013]	1903427	SOFA	SOFA	sequence	3	SO	mature_transcript	RNA_6S
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000376	"A small (184-nt in E. coli) RNA that forms a hairpin type structure. 6S RNA associates with RNA polymerase in a highly specific manner. 6S RNA represses expression from a sigma70-dependent promoter during stationary phase." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00013]	2927899	SOFA	SOFA	sequence	4	SO	transcript	RNA_6S
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000376	"A small (184-nt in E. coli) RNA that forms a hairpin type structure. 6S RNA associates with RNA polymerase in a highly specific manner. 6S RNA represses expression from a sigma70-dependent promoter during stationary phase." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00013]	4001279	SOFA	SOFA	sequence	5	SO	gene_member_region	RNA_6S
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000376	"A small (184-nt in E. coli) RNA that forms a hairpin type structure. 6S RNA associates with RNA polymerase in a highly specific manner. 6S RNA represses expression from a sigma70-dependent promoter during stationary phase." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00013]	4965867	SOFA	SOFA	sequence	6	SO	biological_region	RNA_6S
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000376	"A small (184-nt in E. coli) RNA that forms a hairpin type structure. 6S RNA associates with RNA polymerase in a highly specific manner. 6S RNA represses expression from a sigma70-dependent promoter during stationary phase." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00013]	5740840	SOFA	SOFA	sequence	7	SO	region	RNA_6S
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000376	"A small (184-nt in E. coli) RNA that forms a hairpin type structure. 6S RNA associates with RNA polymerase in a highly specific manner. 6S RNA represses expression from a sigma70-dependent promoter during stationary phase." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00013]	6310814	SOFA	SOFA	sequence	8	SO	sequence_feature	RNA_6S
SO:0000377	\N	\N	"An enterobacterial RNA that binds the CsrA protein. The CsrB RNAs contain a conserved motif CAGGXXG that is found in up to 18 copies and has been suggested to bind CsrA. The Csr regulatory system has a strong negative regulatory effect on glycogen biosynthesis, glyconeogenesis and glycogen catabolism and a positive regulatory effect on glycolysis. In other bacteria such as Erwinia caratovara the RsmA protein has been shown to regulate the production of virulence determinants, such extracellular enzymes. RsmA binds to RsmB regulatory RNA which is also a member of this family." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00018]	SO:0000377	"An enterobacterial RNA that binds the CsrA protein. The CsrB RNAs contain a conserved motif CAGGXXG that is found in up to 18 copies and has been suggested to bind CsrA. The Csr regulatory system has a strong negative regulatory effect on glycogen biosynthesis, glyconeogenesis and glycogen catabolism and a positive regulatory effect on glycolysis. In other bacteria such as Erwinia caratovara the RsmA protein has been shown to regulate the production of virulence determinants, such extracellular enzymes. RsmA binds to RsmB regulatory RNA which is also a member of this family." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00018]	45332	\N	\N	sequence	0	SO	CsrB_RsmB_RNA	CsrB_RsmB_RNA
SO:0000370	SO:0000377	\N	"A non-coding RNA less than 200 nucleotides long, usually with a specific secondary structure, that acts to regulate gene expression. These include short ncRNAs such as piRNA, miRNA and siRNAs (among others)." [PMID:28541282, PomBase:al, SO:ma]	SO:0000377	"An enterobacterial RNA that binds the CsrA protein. The CsrB RNAs contain a conserved motif CAGGXXG that is found in up to 18 copies and has been suggested to bind CsrA. The Csr regulatory system has a strong negative regulatory effect on glycogen biosynthesis, glyconeogenesis and glycogen catabolism and a positive regulatory effect on glycolysis. In other bacteria such as Erwinia caratovara the RsmA protein has been shown to regulate the production of virulence determinants, such extracellular enzymes. RsmA binds to RsmB regulatory RNA which is also a member of this family." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00018]	489945	\N	SOFA	sequence	1	SO	small_regulatory_ncRNA	CsrB_RsmB_RNA
SO:0000655	SO:0000370	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000377	"An enterobacterial RNA that binds the CsrA protein. The CsrB RNAs contain a conserved motif CAGGXXG that is found in up to 18 copies and has been suggested to bind CsrA. The Csr regulatory system has a strong negative regulatory effect on glycogen biosynthesis, glyconeogenesis and glycogen catabolism and a positive regulatory effect on glycolysis. In other bacteria such as Erwinia caratovara the RsmA protein has been shown to regulate the production of virulence determinants, such extracellular enzymes. RsmA binds to RsmB regulatory RNA which is also a member of this family." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00018]	1072396	SOFA	SOFA	sequence	2	SO	ncRNA	CsrB_RsmB_RNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000377	"An enterobacterial RNA that binds the CsrA protein. The CsrB RNAs contain a conserved motif CAGGXXG that is found in up to 18 copies and has been suggested to bind CsrA. The Csr regulatory system has a strong negative regulatory effect on glycogen biosynthesis, glyconeogenesis and glycogen catabolism and a positive regulatory effect on glycolysis. In other bacteria such as Erwinia caratovara the RsmA protein has been shown to regulate the production of virulence determinants, such extracellular enzymes. RsmA binds to RsmB regulatory RNA which is also a member of this family." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00018]	1903428	SOFA	SOFA	sequence	3	SO	mature_transcript	CsrB_RsmB_RNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000377	"An enterobacterial RNA that binds the CsrA protein. The CsrB RNAs contain a conserved motif CAGGXXG that is found in up to 18 copies and has been suggested to bind CsrA. The Csr regulatory system has a strong negative regulatory effect on glycogen biosynthesis, glyconeogenesis and glycogen catabolism and a positive regulatory effect on glycolysis. In other bacteria such as Erwinia caratovara the RsmA protein has been shown to regulate the production of virulence determinants, such extracellular enzymes. RsmA binds to RsmB regulatory RNA which is also a member of this family." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00018]	2927900	SOFA	SOFA	sequence	4	SO	transcript	CsrB_RsmB_RNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000377	"An enterobacterial RNA that binds the CsrA protein. The CsrB RNAs contain a conserved motif CAGGXXG that is found in up to 18 copies and has been suggested to bind CsrA. The Csr regulatory system has a strong negative regulatory effect on glycogen biosynthesis, glyconeogenesis and glycogen catabolism and a positive regulatory effect on glycolysis. In other bacteria such as Erwinia caratovara the RsmA protein has been shown to regulate the production of virulence determinants, such extracellular enzymes. RsmA binds to RsmB regulatory RNA which is also a member of this family." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00018]	4001280	SOFA	SOFA	sequence	5	SO	gene_member_region	CsrB_RsmB_RNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000377	"An enterobacterial RNA that binds the CsrA protein. The CsrB RNAs contain a conserved motif CAGGXXG that is found in up to 18 copies and has been suggested to bind CsrA. The Csr regulatory system has a strong negative regulatory effect on glycogen biosynthesis, glyconeogenesis and glycogen catabolism and a positive regulatory effect on glycolysis. In other bacteria such as Erwinia caratovara the RsmA protein has been shown to regulate the production of virulence determinants, such extracellular enzymes. RsmA binds to RsmB regulatory RNA which is also a member of this family." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00018]	4965868	SOFA	SOFA	sequence	6	SO	biological_region	CsrB_RsmB_RNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000377	"An enterobacterial RNA that binds the CsrA protein. The CsrB RNAs contain a conserved motif CAGGXXG that is found in up to 18 copies and has been suggested to bind CsrA. The Csr regulatory system has a strong negative regulatory effect on glycogen biosynthesis, glyconeogenesis and glycogen catabolism and a positive regulatory effect on glycolysis. In other bacteria such as Erwinia caratovara the RsmA protein has been shown to regulate the production of virulence determinants, such extracellular enzymes. RsmA binds to RsmB regulatory RNA which is also a member of this family." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00018]	5740841	SOFA	SOFA	sequence	7	SO	region	CsrB_RsmB_RNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000377	"An enterobacterial RNA that binds the CsrA protein. The CsrB RNAs contain a conserved motif CAGGXXG that is found in up to 18 copies and has been suggested to bind CsrA. The Csr regulatory system has a strong negative regulatory effect on glycogen biosynthesis, glyconeogenesis and glycogen catabolism and a positive regulatory effect on glycolysis. In other bacteria such as Erwinia caratovara the RsmA protein has been shown to regulate the production of virulence determinants, such extracellular enzymes. RsmA binds to RsmB regulatory RNA which is also a member of this family." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00018]	6310815	SOFA	SOFA	sequence	8	SO	sequence_feature	CsrB_RsmB_RNA
SO:0000378	\N	\N	"DsrA RNA regulates both transcription, by overcoming transcriptional silencing by the nucleoid-associated H-NS protein, and translation, by promoting efficient translation of the stress sigma factor, RpoS. These two activities of DsrA can be separated by mutation: the first of three stem-loops of the 85 nucleotide RNA is necessary for RpoS translation but not for anti-H-NS action, while the second stem-loop is essential for antisilencing and less critical for RpoS translation. The third stem-loop, which behaves as a transcription terminator, can be substituted by the trp transcription terminator without loss of either DsrA function. The sequence of the first stem-loop of DsrA is complementary with the upstream leader portion of RpoS messenger RNA, suggesting that pairing of DsrA with the RpoS message might be important for translational regulation." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00014]	SO:0000378	"DsrA RNA regulates both transcription, by overcoming transcriptional silencing by the nucleoid-associated H-NS protein, and translation, by promoting efficient translation of the stress sigma factor, RpoS. These two activities of DsrA can be separated by mutation: the first of three stem-loops of the 85 nucleotide RNA is necessary for RpoS translation but not for anti-H-NS action, while the second stem-loop is essential for antisilencing and less critical for RpoS translation. The third stem-loop, which behaves as a transcription terminator, can be substituted by the trp transcription terminator without loss of either DsrA function. The sequence of the first stem-loop of DsrA is complementary with the upstream leader portion of RpoS messenger RNA, suggesting that pairing of DsrA with the RpoS message might be important for translational regulation." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00014]	45333	\N	\N	sequence	0	SO	DsrA_RNA	DsrA_RNA
SO:0000370	SO:0000378	\N	"A non-coding RNA less than 200 nucleotides long, usually with a specific secondary structure, that acts to regulate gene expression. These include short ncRNAs such as piRNA, miRNA and siRNAs (among others)." [PMID:28541282, PomBase:al, SO:ma]	SO:0000378	"DsrA RNA regulates both transcription, by overcoming transcriptional silencing by the nucleoid-associated H-NS protein, and translation, by promoting efficient translation of the stress sigma factor, RpoS. These two activities of DsrA can be separated by mutation: the first of three stem-loops of the 85 nucleotide RNA is necessary for RpoS translation but not for anti-H-NS action, while the second stem-loop is essential for antisilencing and less critical for RpoS translation. The third stem-loop, which behaves as a transcription terminator, can be substituted by the trp transcription terminator without loss of either DsrA function. The sequence of the first stem-loop of DsrA is complementary with the upstream leader portion of RpoS messenger RNA, suggesting that pairing of DsrA with the RpoS message might be important for translational regulation." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00014]	489946	\N	SOFA	sequence	1	SO	small_regulatory_ncRNA	DsrA_RNA
SO:0000655	SO:0000370	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000378	"DsrA RNA regulates both transcription, by overcoming transcriptional silencing by the nucleoid-associated H-NS protein, and translation, by promoting efficient translation of the stress sigma factor, RpoS. These two activities of DsrA can be separated by mutation: the first of three stem-loops of the 85 nucleotide RNA is necessary for RpoS translation but not for anti-H-NS action, while the second stem-loop is essential for antisilencing and less critical for RpoS translation. The third stem-loop, which behaves as a transcription terminator, can be substituted by the trp transcription terminator without loss of either DsrA function. The sequence of the first stem-loop of DsrA is complementary with the upstream leader portion of RpoS messenger RNA, suggesting that pairing of DsrA with the RpoS message might be important for translational regulation." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00014]	1072397	SOFA	SOFA	sequence	2	SO	ncRNA	DsrA_RNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000378	"DsrA RNA regulates both transcription, by overcoming transcriptional silencing by the nucleoid-associated H-NS protein, and translation, by promoting efficient translation of the stress sigma factor, RpoS. These two activities of DsrA can be separated by mutation: the first of three stem-loops of the 85 nucleotide RNA is necessary for RpoS translation but not for anti-H-NS action, while the second stem-loop is essential for antisilencing and less critical for RpoS translation. The third stem-loop, which behaves as a transcription terminator, can be substituted by the trp transcription terminator without loss of either DsrA function. The sequence of the first stem-loop of DsrA is complementary with the upstream leader portion of RpoS messenger RNA, suggesting that pairing of DsrA with the RpoS message might be important for translational regulation." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00014]	1903429	SOFA	SOFA	sequence	3	SO	mature_transcript	DsrA_RNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000378	"DsrA RNA regulates both transcription, by overcoming transcriptional silencing by the nucleoid-associated H-NS protein, and translation, by promoting efficient translation of the stress sigma factor, RpoS. These two activities of DsrA can be separated by mutation: the first of three stem-loops of the 85 nucleotide RNA is necessary for RpoS translation but not for anti-H-NS action, while the second stem-loop is essential for antisilencing and less critical for RpoS translation. The third stem-loop, which behaves as a transcription terminator, can be substituted by the trp transcription terminator without loss of either DsrA function. The sequence of the first stem-loop of DsrA is complementary with the upstream leader portion of RpoS messenger RNA, suggesting that pairing of DsrA with the RpoS message might be important for translational regulation." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00014]	2927901	SOFA	SOFA	sequence	4	SO	transcript	DsrA_RNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000378	"DsrA RNA regulates both transcription, by overcoming transcriptional silencing by the nucleoid-associated H-NS protein, and translation, by promoting efficient translation of the stress sigma factor, RpoS. These two activities of DsrA can be separated by mutation: the first of three stem-loops of the 85 nucleotide RNA is necessary for RpoS translation but not for anti-H-NS action, while the second stem-loop is essential for antisilencing and less critical for RpoS translation. The third stem-loop, which behaves as a transcription terminator, can be substituted by the trp transcription terminator without loss of either DsrA function. The sequence of the first stem-loop of DsrA is complementary with the upstream leader portion of RpoS messenger RNA, suggesting that pairing of DsrA with the RpoS message might be important for translational regulation." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00014]	4001281	SOFA	SOFA	sequence	5	SO	gene_member_region	DsrA_RNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000378	"DsrA RNA regulates both transcription, by overcoming transcriptional silencing by the nucleoid-associated H-NS protein, and translation, by promoting efficient translation of the stress sigma factor, RpoS. These two activities of DsrA can be separated by mutation: the first of three stem-loops of the 85 nucleotide RNA is necessary for RpoS translation but not for anti-H-NS action, while the second stem-loop is essential for antisilencing and less critical for RpoS translation. The third stem-loop, which behaves as a transcription terminator, can be substituted by the trp transcription terminator without loss of either DsrA function. The sequence of the first stem-loop of DsrA is complementary with the upstream leader portion of RpoS messenger RNA, suggesting that pairing of DsrA with the RpoS message might be important for translational regulation." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00014]	4965869	SOFA	SOFA	sequence	6	SO	biological_region	DsrA_RNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000378	"DsrA RNA regulates both transcription, by overcoming transcriptional silencing by the nucleoid-associated H-NS protein, and translation, by promoting efficient translation of the stress sigma factor, RpoS. These two activities of DsrA can be separated by mutation: the first of three stem-loops of the 85 nucleotide RNA is necessary for RpoS translation but not for anti-H-NS action, while the second stem-loop is essential for antisilencing and less critical for RpoS translation. The third stem-loop, which behaves as a transcription terminator, can be substituted by the trp transcription terminator without loss of either DsrA function. The sequence of the first stem-loop of DsrA is complementary with the upstream leader portion of RpoS messenger RNA, suggesting that pairing of DsrA with the RpoS message might be important for translational regulation." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00014]	5740842	SOFA	SOFA	sequence	7	SO	region	DsrA_RNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000378	"DsrA RNA regulates both transcription, by overcoming transcriptional silencing by the nucleoid-associated H-NS protein, and translation, by promoting efficient translation of the stress sigma factor, RpoS. These two activities of DsrA can be separated by mutation: the first of three stem-loops of the 85 nucleotide RNA is necessary for RpoS translation but not for anti-H-NS action, while the second stem-loop is essential for antisilencing and less critical for RpoS translation. The third stem-loop, which behaves as a transcription terminator, can be substituted by the trp transcription terminator without loss of either DsrA function. The sequence of the first stem-loop of DsrA is complementary with the upstream leader portion of RpoS messenger RNA, suggesting that pairing of DsrA with the RpoS message might be important for translational regulation." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00014]	6310816	SOFA	SOFA	sequence	8	SO	sequence_feature	DsrA_RNA
SO:0000379	\N	\N	"A small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00022]	SO:0000379	"A small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00022]	45334	\N	\N	sequence	0	SO	GcvB_RNA	GcvB_RNA
SO:0000378	SO:0000379	\N	"DsrA RNA regulates both transcription, by overcoming transcriptional silencing by the nucleoid-associated H-NS protein, and translation, by promoting efficient translation of the stress sigma factor, RpoS. These two activities of DsrA can be separated by mutation: the first of three stem-loops of the 85 nucleotide RNA is necessary for RpoS translation but not for anti-H-NS action, while the second stem-loop is essential for antisilencing and less critical for RpoS translation. The third stem-loop, which behaves as a transcription terminator, can be substituted by the trp transcription terminator without loss of either DsrA function. The sequence of the first stem-loop of DsrA is complementary with the upstream leader portion of RpoS messenger RNA, suggesting that pairing of DsrA with the RpoS message might be important for translational regulation." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00014]	SO:0000379	"A small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00022]	489947	\N	\N	sequence	1	SO	DsrA_RNA	GcvB_RNA
SO:0000370	SO:0000378	\N	"A non-coding RNA less than 200 nucleotides long, usually with a specific secondary structure, that acts to regulate gene expression. These include short ncRNAs such as piRNA, miRNA and siRNAs (among others)." [PMID:28541282, PomBase:al, SO:ma]	SO:0000379	"A small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00022]	1072398	\N	SOFA	sequence	2	SO	small_regulatory_ncRNA	GcvB_RNA
SO:0000655	SO:0000370	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000379	"A small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00022]	1903430	SOFA	SOFA	sequence	3	SO	ncRNA	GcvB_RNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000379	"A small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00022]	2927902	SOFA	SOFA	sequence	4	SO	mature_transcript	GcvB_RNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000379	"A small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00022]	4001282	SOFA	SOFA	sequence	5	SO	transcript	GcvB_RNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000379	"A small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00022]	4965870	SOFA	SOFA	sequence	6	SO	gene_member_region	GcvB_RNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000379	"A small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00022]	5740843	SOFA	SOFA	sequence	7	SO	biological_region	GcvB_RNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000379	"A small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00022]	6310817	SOFA	SOFA	sequence	8	SO	region	GcvB_RNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000379	"A small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00022]	6699227	SOFA	SOFA	sequence	9	SO	sequence_feature	GcvB_RNA
SO:0000380	\N	SOFA	"A small catalytic RNA motif that catalyzes self-cleavage reaction. Its name comes from its secondary structure which resembles a carpenter's hammer. The hammerhead ribozyme is involved in the replication of some viroid and some satellite RNAs." [PMID:2436805]	SO:0000380	"A small catalytic RNA motif that catalyzes self-cleavage reaction. Its name comes from its secondary structure which resembles a carpenter's hammer. The hammerhead ribozyme is involved in the replication of some viroid and some satellite RNAs." [PMID:2436805]	45335	\N	SOFA	sequence	0	SO	hammerhead_ribozyme	hammerhead_ribozyme
SO:0000715	SO:0000380	SOFA	"A motif that is active in RNA sequence." [SO:ke]	SO:0000380	"A small catalytic RNA motif that catalyzes self-cleavage reaction. Its name comes from its secondary structure which resembles a carpenter's hammer. The hammerhead ribozyme is involved in the replication of some viroid and some satellite RNAs." [PMID:2436805]	489948	SOFA	SOFA	sequence	1	SO	RNA_motif	hammerhead_ribozyme
SO:0000714	SO:0000715	SOFA	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0000380	"A small catalytic RNA motif that catalyzes self-cleavage reaction. Its name comes from its secondary structure which resembles a carpenter's hammer. The hammerhead ribozyme is involved in the replication of some viroid and some satellite RNAs." [PMID:2436805]	1072399	SOFA	SOFA	sequence	2	SO	nucleotide_motif	hammerhead_ribozyme
SO:0001683	SO:0000714	SOFA	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0000380	"A small catalytic RNA motif that catalyzes self-cleavage reaction. Its name comes from its secondary structure which resembles a carpenter's hammer. The hammerhead ribozyme is involved in the replication of some viroid and some satellite RNAs." [PMID:2436805]	1903431	SOFA	SOFA	sequence	3	SO	sequence_motif	hammerhead_ribozyme
SO:0001411	SO:0001683	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000380	"A small catalytic RNA motif that catalyzes self-cleavage reaction. Its name comes from its secondary structure which resembles a carpenter's hammer. The hammerhead ribozyme is involved in the replication of some viroid and some satellite RNAs." [PMID:2436805]	2927903	SOFA	SOFA	sequence	4	SO	biological_region	hammerhead_ribozyme
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000380	"A small catalytic RNA motif that catalyzes self-cleavage reaction. Its name comes from its secondary structure which resembles a carpenter's hammer. The hammerhead ribozyme is involved in the replication of some viroid and some satellite RNAs." [PMID:2436805]	4001283	SOFA	SOFA	sequence	5	SO	region	hammerhead_ribozyme
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000380	"A small catalytic RNA motif that catalyzes self-cleavage reaction. Its name comes from its secondary structure which resembles a carpenter's hammer. The hammerhead ribozyme is involved in the replication of some viroid and some satellite RNAs." [PMID:2436805]	4965871	SOFA	SOFA	sequence	6	SO	sequence_feature	hammerhead_ribozyme
SO:0000381	\N	\N	"" []	SO:0000381	"" []	45336	\N	\N	sequence	0	SO	group_IIA_intron	group_IIA_intron
SO:0000603	SO:0000381	\N	"Group II introns are found in rRNA, tRNA and mRNA of organelles in fungi, plants and protists, and also in mRNA in bacteria. They are large self-splicing ribozymes and have 6 structural domains (usually designated dI to dVI). A subset of group II introns also encode essential splicing proteins in intronic ORFs. The length of these introns can therefore be up to 3kb. Splicing occurs in almost identical fashion to nuclear pre-mRNA splicing with two transesterification steps. The 2' hydroxyl of a bulged adenosine in domain VI attacks the 5' splice site, followed by nucleophilic attack on the 3' splice site by the 3' OH of the upstream exon. Protein machinery is required for splicing in vivo, and long range intron to intron and intron-exon interactions are important for splice site positioning. Group II introns are further sub-classified into groups IIA and IIB which differ in splice site consensus, distance of bulged A from 3' splice site, some tertiary interactions, and intronic ORF phylogeny." [http://www.sanger.ac.uk/Software/Rfam/browse/index.shtml]	SO:0000381	"" []	489949	\N	SOFA	sequence	1	SO	group_II_intron	group_IIA_intron
SO:0000588	SO:0000603	\N	"A self spliced intron." [SO:ke]	SO:0000381	"" []	1072400	SOFA	SOFA	sequence	2	SO	autocatalytically_spliced_intron	group_IIA_intron
SO:0000188	SO:0000588	\N	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000381	"" []	1903432	SOFA	SOFA	sequence	3	SO	intron	group_IIA_intron
SO:0000835	SO:0000188	\N	"A part of a primary transcript." [SO:ke]	SO:0000381	"" []	2927904	SOFA	SOFA	sequence	4	SO	primary_transcript_region	group_IIA_intron
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000381	"" []	4001284	SOFA	SOFA	sequence	5	SO	primary_transcript	group_IIA_intron
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0000381	"" []	4001285	SOFA	SOFA	sequence	5	SO	transcript_region	group_IIA_intron
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000381	"" []	4965872	SOFA	SOFA	sequence	6	SO	transcript	group_IIA_intron
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000381	"" []	4965873	SOFA	SOFA	sequence	6	SO	transcript	group_IIA_intron
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000381	"" []	4965874	SOFA	SOFA	sequence	6	SO	biological_region	group_IIA_intron
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000381	"" []	5740844	SOFA	SOFA	sequence	7	SO	gene_member_region	group_IIA_intron
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000381	"" []	6699228	SOFA	SOFA	sequence	9	SO	region	group_IIA_intron
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000381	"" []	6310818	SOFA	SOFA	sequence	8	SO	biological_region	group_IIA_intron
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000381	"" []	6888927	SOFA	SOFA	sequence	10	SO	sequence_feature	group_IIA_intron
SO:0000382	\N	\N	"" []	SO:0000382	"" []	45337	\N	\N	sequence	0	SO	group_IIB_intron	group_IIB_intron
SO:0000603	SO:0000382	\N	"Group II introns are found in rRNA, tRNA and mRNA of organelles in fungi, plants and protists, and also in mRNA in bacteria. They are large self-splicing ribozymes and have 6 structural domains (usually designated dI to dVI). A subset of group II introns also encode essential splicing proteins in intronic ORFs. The length of these introns can therefore be up to 3kb. Splicing occurs in almost identical fashion to nuclear pre-mRNA splicing with two transesterification steps. The 2' hydroxyl of a bulged adenosine in domain VI attacks the 5' splice site, followed by nucleophilic attack on the 3' splice site by the 3' OH of the upstream exon. Protein machinery is required for splicing in vivo, and long range intron to intron and intron-exon interactions are important for splice site positioning. Group II introns are further sub-classified into groups IIA and IIB which differ in splice site consensus, distance of bulged A from 3' splice site, some tertiary interactions, and intronic ORF phylogeny." [http://www.sanger.ac.uk/Software/Rfam/browse/index.shtml]	SO:0000382	"" []	489950	\N	SOFA	sequence	1	SO	group_II_intron	group_IIB_intron
SO:0000588	SO:0000603	\N	"A self spliced intron." [SO:ke]	SO:0000382	"" []	1072401	SOFA	SOFA	sequence	2	SO	autocatalytically_spliced_intron	group_IIB_intron
SO:0000188	SO:0000588	\N	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000382	"" []	1903433	SOFA	SOFA	sequence	3	SO	intron	group_IIB_intron
SO:0000835	SO:0000188	\N	"A part of a primary transcript." [SO:ke]	SO:0000382	"" []	2927905	SOFA	SOFA	sequence	4	SO	primary_transcript_region	group_IIB_intron
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000382	"" []	4001286	SOFA	SOFA	sequence	5	SO	primary_transcript	group_IIB_intron
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0000382	"" []	4001287	SOFA	SOFA	sequence	5	SO	transcript_region	group_IIB_intron
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000382	"" []	4965875	SOFA	SOFA	sequence	6	SO	transcript	group_IIB_intron
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000382	"" []	4965876	SOFA	SOFA	sequence	6	SO	transcript	group_IIB_intron
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000382	"" []	4965877	SOFA	SOFA	sequence	6	SO	biological_region	group_IIB_intron
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000382	"" []	5740846	SOFA	SOFA	sequence	7	SO	gene_member_region	group_IIB_intron
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000382	"" []	6699229	SOFA	SOFA	sequence	9	SO	region	group_IIB_intron
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000382	"" []	6310820	SOFA	SOFA	sequence	8	SO	biological_region	group_IIB_intron
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000382	"" []	6888928	SOFA	SOFA	sequence	10	SO	sequence_feature	group_IIB_intron
SO:0000383	\N	\N	"A non-translated 93 nt antisense RNA that binds its target ompF mRNA and regulates ompF expression by inhibiting translation and inducing degradation of the message." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00033]	SO:0000383	"A non-translated 93 nt antisense RNA that binds its target ompF mRNA and regulates ompF expression by inhibiting translation and inducing degradation of the message." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00033]	45338	\N	\N	sequence	0	SO	MicF_RNA	MicF_RNA
SO:0000644	SO:0000383	\N	"Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA." [SO:ke]	SO:0000383	"A non-translated 93 nt antisense RNA that binds its target ompF mRNA and regulates ompF expression by inhibiting translation and inducing degradation of the message." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00033]	489951	\N	SOFA	sequence	1	SO	antisense_RNA	MicF_RNA
SO:0000655	SO:0000644	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000383	"A non-translated 93 nt antisense RNA that binds its target ompF mRNA and regulates ompF expression by inhibiting translation and inducing degradation of the message." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00033]	1072402	SOFA	SOFA	sequence	2	SO	ncRNA	MicF_RNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000383	"A non-translated 93 nt antisense RNA that binds its target ompF mRNA and regulates ompF expression by inhibiting translation and inducing degradation of the message." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00033]	1903434	SOFA	SOFA	sequence	3	SO	mature_transcript	MicF_RNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000383	"A non-translated 93 nt antisense RNA that binds its target ompF mRNA and regulates ompF expression by inhibiting translation and inducing degradation of the message." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00033]	2927906	SOFA	SOFA	sequence	4	SO	transcript	MicF_RNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000383	"A non-translated 93 nt antisense RNA that binds its target ompF mRNA and regulates ompF expression by inhibiting translation and inducing degradation of the message." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00033]	4001288	SOFA	SOFA	sequence	5	SO	gene_member_region	MicF_RNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000383	"A non-translated 93 nt antisense RNA that binds its target ompF mRNA and regulates ompF expression by inhibiting translation and inducing degradation of the message." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00033]	4965878	SOFA	SOFA	sequence	6	SO	biological_region	MicF_RNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000383	"A non-translated 93 nt antisense RNA that binds its target ompF mRNA and regulates ompF expression by inhibiting translation and inducing degradation of the message." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00033]	5740848	SOFA	SOFA	sequence	7	SO	region	MicF_RNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000383	"A non-translated 93 nt antisense RNA that binds its target ompF mRNA and regulates ompF expression by inhibiting translation and inducing degradation of the message." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00033]	6310822	SOFA	SOFA	sequence	8	SO	sequence_feature	MicF_RNA
SO:0000384	\N	\N	"A small untranslated RNA which is induced in response to oxidative stress in Escherichia coli. Acts as a global regulator to activate or repress the expression of as many as 40 genes, including the fhlA-encoded transcriptional activator and the rpoS-encoded sigma(s) subunit of RNA polymerase. OxyS is bound by the Hfq protein, that increases the OxyS RNA interaction with its target messages." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00035]	SO:0000384	"A small untranslated RNA which is induced in response to oxidative stress in Escherichia coli. Acts as a global regulator to activate or repress the expression of as many as 40 genes, including the fhlA-encoded transcriptional activator and the rpoS-encoded sigma(s) subunit of RNA polymerase. OxyS is bound by the Hfq protein, that increases the OxyS RNA interaction with its target messages." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00035]	45339	\N	\N	sequence	0	SO	OxyS_RNA	OxyS_RNA
SO:0000370	SO:0000384	\N	"A non-coding RNA less than 200 nucleotides long, usually with a specific secondary structure, that acts to regulate gene expression. These include short ncRNAs such as piRNA, miRNA and siRNAs (among others)." [PMID:28541282, PomBase:al, SO:ma]	SO:0000384	"A small untranslated RNA which is induced in response to oxidative stress in Escherichia coli. Acts as a global regulator to activate or repress the expression of as many as 40 genes, including the fhlA-encoded transcriptional activator and the rpoS-encoded sigma(s) subunit of RNA polymerase. OxyS is bound by the Hfq protein, that increases the OxyS RNA interaction with its target messages." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00035]	489952	\N	SOFA	sequence	1	SO	small_regulatory_ncRNA	OxyS_RNA
SO:0000655	SO:0000370	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000384	"A small untranslated RNA which is induced in response to oxidative stress in Escherichia coli. Acts as a global regulator to activate or repress the expression of as many as 40 genes, including the fhlA-encoded transcriptional activator and the rpoS-encoded sigma(s) subunit of RNA polymerase. OxyS is bound by the Hfq protein, that increases the OxyS RNA interaction with its target messages." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00035]	1072403	SOFA	SOFA	sequence	2	SO	ncRNA	OxyS_RNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000384	"A small untranslated RNA which is induced in response to oxidative stress in Escherichia coli. Acts as a global regulator to activate or repress the expression of as many as 40 genes, including the fhlA-encoded transcriptional activator and the rpoS-encoded sigma(s) subunit of RNA polymerase. OxyS is bound by the Hfq protein, that increases the OxyS RNA interaction with its target messages." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00035]	1903435	SOFA	SOFA	sequence	3	SO	mature_transcript	OxyS_RNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000384	"A small untranslated RNA which is induced in response to oxidative stress in Escherichia coli. Acts as a global regulator to activate or repress the expression of as many as 40 genes, including the fhlA-encoded transcriptional activator and the rpoS-encoded sigma(s) subunit of RNA polymerase. OxyS is bound by the Hfq protein, that increases the OxyS RNA interaction with its target messages." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00035]	2927907	SOFA	SOFA	sequence	4	SO	transcript	OxyS_RNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000384	"A small untranslated RNA which is induced in response to oxidative stress in Escherichia coli. Acts as a global regulator to activate or repress the expression of as many as 40 genes, including the fhlA-encoded transcriptional activator and the rpoS-encoded sigma(s) subunit of RNA polymerase. OxyS is bound by the Hfq protein, that increases the OxyS RNA interaction with its target messages." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00035]	4001289	SOFA	SOFA	sequence	5	SO	gene_member_region	OxyS_RNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000384	"A small untranslated RNA which is induced in response to oxidative stress in Escherichia coli. Acts as a global regulator to activate or repress the expression of as many as 40 genes, including the fhlA-encoded transcriptional activator and the rpoS-encoded sigma(s) subunit of RNA polymerase. OxyS is bound by the Hfq protein, that increases the OxyS RNA interaction with its target messages." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00035]	4965879	SOFA	SOFA	sequence	6	SO	biological_region	OxyS_RNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000384	"A small untranslated RNA which is induced in response to oxidative stress in Escherichia coli. Acts as a global regulator to activate or repress the expression of as many as 40 genes, including the fhlA-encoded transcriptional activator and the rpoS-encoded sigma(s) subunit of RNA polymerase. OxyS is bound by the Hfq protein, that increases the OxyS RNA interaction with its target messages." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00035]	5740849	SOFA	SOFA	sequence	7	SO	region	OxyS_RNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000384	"A small untranslated RNA which is induced in response to oxidative stress in Escherichia coli. Acts as a global regulator to activate or repress the expression of as many as 40 genes, including the fhlA-encoded transcriptional activator and the rpoS-encoded sigma(s) subunit of RNA polymerase. OxyS is bound by the Hfq protein, that increases the OxyS RNA interaction with its target messages." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00035]	6310823	SOFA	SOFA	sequence	8	SO	sequence_feature	OxyS_RNA
SO:0000385	\N	SOFA	"The RNA molecule essential for the catalytic activity of RNase MRP, an enzymatically active ribonucleoprotein with two distinct roles in eukaryotes. In mitochondria it plays a direct role in the initiation of mitochondrial DNA replication. In the nucleus it is involved in precursor rRNA processing, where it cleaves the internal transcribed spacer 1 between 18S and 5.8S rRNAs." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00030]	SO:0000385	"The RNA molecule essential for the catalytic activity of RNase MRP, an enzymatically active ribonucleoprotein with two distinct roles in eukaryotes. In mitochondria it plays a direct role in the initiation of mitochondrial DNA replication. In the nucleus it is involved in precursor rRNA processing, where it cleaves the internal transcribed spacer 1 between 18S and 5.8S rRNAs." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00030]	45340	\N	SOFA	sequence	0	SO	RNase_MRP_RNA	RNase_MRP_RNA
SO:0000655	SO:0000385	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000385	"The RNA molecule essential for the catalytic activity of RNase MRP, an enzymatically active ribonucleoprotein with two distinct roles in eukaryotes. In mitochondria it plays a direct role in the initiation of mitochondrial DNA replication. In the nucleus it is involved in precursor rRNA processing, where it cleaves the internal transcribed spacer 1 between 18S and 5.8S rRNAs." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00030]	489953	SOFA	SOFA	sequence	1	SO	ncRNA	RNase_MRP_RNA
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000385	"The RNA molecule essential for the catalytic activity of RNase MRP, an enzymatically active ribonucleoprotein with two distinct roles in eukaryotes. In mitochondria it plays a direct role in the initiation of mitochondrial DNA replication. In the nucleus it is involved in precursor rRNA processing, where it cleaves the internal transcribed spacer 1 between 18S and 5.8S rRNAs." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00030]	1072404	SOFA	SOFA	sequence	2	SO	mature_transcript	RNase_MRP_RNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000385	"The RNA molecule essential for the catalytic activity of RNase MRP, an enzymatically active ribonucleoprotein with two distinct roles in eukaryotes. In mitochondria it plays a direct role in the initiation of mitochondrial DNA replication. In the nucleus it is involved in precursor rRNA processing, where it cleaves the internal transcribed spacer 1 between 18S and 5.8S rRNAs." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00030]	1903436	SOFA	SOFA	sequence	3	SO	transcript	RNase_MRP_RNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000385	"The RNA molecule essential for the catalytic activity of RNase MRP, an enzymatically active ribonucleoprotein with two distinct roles in eukaryotes. In mitochondria it plays a direct role in the initiation of mitochondrial DNA replication. In the nucleus it is involved in precursor rRNA processing, where it cleaves the internal transcribed spacer 1 between 18S and 5.8S rRNAs." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00030]	2927908	SOFA	SOFA	sequence	4	SO	gene_member_region	RNase_MRP_RNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000385	"The RNA molecule essential for the catalytic activity of RNase MRP, an enzymatically active ribonucleoprotein with two distinct roles in eukaryotes. In mitochondria it plays a direct role in the initiation of mitochondrial DNA replication. In the nucleus it is involved in precursor rRNA processing, where it cleaves the internal transcribed spacer 1 between 18S and 5.8S rRNAs." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00030]	4001290	SOFA	SOFA	sequence	5	SO	biological_region	RNase_MRP_RNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000385	"The RNA molecule essential for the catalytic activity of RNase MRP, an enzymatically active ribonucleoprotein with two distinct roles in eukaryotes. In mitochondria it plays a direct role in the initiation of mitochondrial DNA replication. In the nucleus it is involved in precursor rRNA processing, where it cleaves the internal transcribed spacer 1 between 18S and 5.8S rRNAs." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00030]	4965880	SOFA	SOFA	sequence	6	SO	region	RNase_MRP_RNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000385	"The RNA molecule essential for the catalytic activity of RNase MRP, an enzymatically active ribonucleoprotein with two distinct roles in eukaryotes. In mitochondria it plays a direct role in the initiation of mitochondrial DNA replication. In the nucleus it is involved in precursor rRNA processing, where it cleaves the internal transcribed spacer 1 between 18S and 5.8S rRNAs." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00030]	5740850	SOFA	SOFA	sequence	7	SO	sequence_feature	RNase_MRP_RNA
SO:0000386	\N	SOFA	"The RNA component of Ribonuclease P (RNase P), a ubiquitous endoribonuclease, found in archaea, bacteria and eukarya as well as chloroplasts and mitochondria. Its best characterized activity is the generation of mature 5 prime ends of tRNAs by cleaving the 5 prime leader elements of precursor-tRNAs. Cellular RNase Ps are ribonucleoproteins. RNA from bacterial RNase Ps retains its catalytic activity in the absence of the protein subunit, i.e. it is a ribozyme. Isolated eukaryotic and archaeal RNase P RNA has not been shown to retain its catalytic function, but is still essential for the catalytic activity of the holoenzyme. Although the archaeal and eukaryotic holoenzymes have a much greater protein content than the bacterial ones, the RNA cores from all the three lineages are homologous. Helices corresponding to P1, P2, P3, P4, and P10/11 are common to all cellular RNase P RNAs. Yet, there is considerable sequence variation, particularly among the eukaryotic RNAs." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00010]	SO:0000386	"The RNA component of Ribonuclease P (RNase P), a ubiquitous endoribonuclease, found in archaea, bacteria and eukarya as well as chloroplasts and mitochondria. Its best characterized activity is the generation of mature 5 prime ends of tRNAs by cleaving the 5 prime leader elements of precursor-tRNAs. Cellular RNase Ps are ribonucleoproteins. RNA from bacterial RNase Ps retains its catalytic activity in the absence of the protein subunit, i.e. it is a ribozyme. Isolated eukaryotic and archaeal RNase P RNA has not been shown to retain its catalytic function, but is still essential for the catalytic activity of the holoenzyme. Although the archaeal and eukaryotic holoenzymes have a much greater protein content than the bacterial ones, the RNA cores from all the three lineages are homologous. Helices corresponding to P1, P2, P3, P4, and P10/11 are common to all cellular RNase P RNAs. Yet, there is considerable sequence variation, particularly among the eukaryotic RNAs." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00010]	45341	\N	SOFA	sequence	0	SO	RNase_P_RNA	RNase_P_RNA
SO:0000655	SO:0000386	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000386	"The RNA component of Ribonuclease P (RNase P), a ubiquitous endoribonuclease, found in archaea, bacteria and eukarya as well as chloroplasts and mitochondria. Its best characterized activity is the generation of mature 5 prime ends of tRNAs by cleaving the 5 prime leader elements of precursor-tRNAs. Cellular RNase Ps are ribonucleoproteins. RNA from bacterial RNase Ps retains its catalytic activity in the absence of the protein subunit, i.e. it is a ribozyme. Isolated eukaryotic and archaeal RNase P RNA has not been shown to retain its catalytic function, but is still essential for the catalytic activity of the holoenzyme. Although the archaeal and eukaryotic holoenzymes have a much greater protein content than the bacterial ones, the RNA cores from all the three lineages are homologous. Helices corresponding to P1, P2, P3, P4, and P10/11 are common to all cellular RNase P RNAs. Yet, there is considerable sequence variation, particularly among the eukaryotic RNAs." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00010]	489954	SOFA	SOFA	sequence	1	SO	ncRNA	RNase_P_RNA
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000386	"The RNA component of Ribonuclease P (RNase P), a ubiquitous endoribonuclease, found in archaea, bacteria and eukarya as well as chloroplasts and mitochondria. Its best characterized activity is the generation of mature 5 prime ends of tRNAs by cleaving the 5 prime leader elements of precursor-tRNAs. Cellular RNase Ps are ribonucleoproteins. RNA from bacterial RNase Ps retains its catalytic activity in the absence of the protein subunit, i.e. it is a ribozyme. Isolated eukaryotic and archaeal RNase P RNA has not been shown to retain its catalytic function, but is still essential for the catalytic activity of the holoenzyme. Although the archaeal and eukaryotic holoenzymes have a much greater protein content than the bacterial ones, the RNA cores from all the three lineages are homologous. Helices corresponding to P1, P2, P3, P4, and P10/11 are common to all cellular RNase P RNAs. Yet, there is considerable sequence variation, particularly among the eukaryotic RNAs." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00010]	1072405	SOFA	SOFA	sequence	2	SO	mature_transcript	RNase_P_RNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000386	"The RNA component of Ribonuclease P (RNase P), a ubiquitous endoribonuclease, found in archaea, bacteria and eukarya as well as chloroplasts and mitochondria. Its best characterized activity is the generation of mature 5 prime ends of tRNAs by cleaving the 5 prime leader elements of precursor-tRNAs. Cellular RNase Ps are ribonucleoproteins. RNA from bacterial RNase Ps retains its catalytic activity in the absence of the protein subunit, i.e. it is a ribozyme. Isolated eukaryotic and archaeal RNase P RNA has not been shown to retain its catalytic function, but is still essential for the catalytic activity of the holoenzyme. Although the archaeal and eukaryotic holoenzymes have a much greater protein content than the bacterial ones, the RNA cores from all the three lineages are homologous. Helices corresponding to P1, P2, P3, P4, and P10/11 are common to all cellular RNase P RNAs. Yet, there is considerable sequence variation, particularly among the eukaryotic RNAs." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00010]	1903437	SOFA	SOFA	sequence	3	SO	transcript	RNase_P_RNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000386	"The RNA component of Ribonuclease P (RNase P), a ubiquitous endoribonuclease, found in archaea, bacteria and eukarya as well as chloroplasts and mitochondria. Its best characterized activity is the generation of mature 5 prime ends of tRNAs by cleaving the 5 prime leader elements of precursor-tRNAs. Cellular RNase Ps are ribonucleoproteins. RNA from bacterial RNase Ps retains its catalytic activity in the absence of the protein subunit, i.e. it is a ribozyme. Isolated eukaryotic and archaeal RNase P RNA has not been shown to retain its catalytic function, but is still essential for the catalytic activity of the holoenzyme. Although the archaeal and eukaryotic holoenzymes have a much greater protein content than the bacterial ones, the RNA cores from all the three lineages are homologous. Helices corresponding to P1, P2, P3, P4, and P10/11 are common to all cellular RNase P RNAs. Yet, there is considerable sequence variation, particularly among the eukaryotic RNAs." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00010]	2927909	SOFA	SOFA	sequence	4	SO	gene_member_region	RNase_P_RNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000386	"The RNA component of Ribonuclease P (RNase P), a ubiquitous endoribonuclease, found in archaea, bacteria and eukarya as well as chloroplasts and mitochondria. Its best characterized activity is the generation of mature 5 prime ends of tRNAs by cleaving the 5 prime leader elements of precursor-tRNAs. Cellular RNase Ps are ribonucleoproteins. RNA from bacterial RNase Ps retains its catalytic activity in the absence of the protein subunit, i.e. it is a ribozyme. Isolated eukaryotic and archaeal RNase P RNA has not been shown to retain its catalytic function, but is still essential for the catalytic activity of the holoenzyme. Although the archaeal and eukaryotic holoenzymes have a much greater protein content than the bacterial ones, the RNA cores from all the three lineages are homologous. Helices corresponding to P1, P2, P3, P4, and P10/11 are common to all cellular RNase P RNAs. Yet, there is considerable sequence variation, particularly among the eukaryotic RNAs." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00010]	4001291	SOFA	SOFA	sequence	5	SO	biological_region	RNase_P_RNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000386	"The RNA component of Ribonuclease P (RNase P), a ubiquitous endoribonuclease, found in archaea, bacteria and eukarya as well as chloroplasts and mitochondria. Its best characterized activity is the generation of mature 5 prime ends of tRNAs by cleaving the 5 prime leader elements of precursor-tRNAs. Cellular RNase Ps are ribonucleoproteins. RNA from bacterial RNase Ps retains its catalytic activity in the absence of the protein subunit, i.e. it is a ribozyme. Isolated eukaryotic and archaeal RNase P RNA has not been shown to retain its catalytic function, but is still essential for the catalytic activity of the holoenzyme. Although the archaeal and eukaryotic holoenzymes have a much greater protein content than the bacterial ones, the RNA cores from all the three lineages are homologous. Helices corresponding to P1, P2, P3, P4, and P10/11 are common to all cellular RNase P RNAs. Yet, there is considerable sequence variation, particularly among the eukaryotic RNAs." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00010]	4965881	SOFA	SOFA	sequence	6	SO	region	RNase_P_RNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000386	"The RNA component of Ribonuclease P (RNase P), a ubiquitous endoribonuclease, found in archaea, bacteria and eukarya as well as chloroplasts and mitochondria. Its best characterized activity is the generation of mature 5 prime ends of tRNAs by cleaving the 5 prime leader elements of precursor-tRNAs. Cellular RNase Ps are ribonucleoproteins. RNA from bacterial RNase Ps retains its catalytic activity in the absence of the protein subunit, i.e. it is a ribozyme. Isolated eukaryotic and archaeal RNase P RNA has not been shown to retain its catalytic function, but is still essential for the catalytic activity of the holoenzyme. Although the archaeal and eukaryotic holoenzymes have a much greater protein content than the bacterial ones, the RNA cores from all the three lineages are homologous. Helices corresponding to P1, P2, P3, P4, and P10/11 are common to all cellular RNase P RNAs. Yet, there is considerable sequence variation, particularly among the eukaryotic RNAs." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00010]	5740851	SOFA	SOFA	sequence	7	SO	sequence_feature	RNase_P_RNA
SO:0000387	\N	\N	"Translational regulation of the stationary phase sigma factor RpoS is mediated by the formation of a double-stranded RNA stem-loop structure in the upstream region of the rpoS messenger RNA, occluding the translation initiation site. Clones carrying rprA (RpoS regulator RNA) increased the translation of RpoS. The rprA gene encodes a 106 nucleotide regulatory RNA. As with DsrA Rfam:RF00014, RprA is predicted to form three stem-loops. Thus, at least two small RNAs, DsrA and RprA, participate in the positive regulation of RpoS translation. Unlike DsrA, RprA does not have an extensive region of complementarity to the RpoS leader, leaving its mechanism of action unclear. RprA is non-essential." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00034]	SO:0000387	"Translational regulation of the stationary phase sigma factor RpoS is mediated by the formation of a double-stranded RNA stem-loop structure in the upstream region of the rpoS messenger RNA, occluding the translation initiation site. Clones carrying rprA (RpoS regulator RNA) increased the translation of RpoS. The rprA gene encodes a 106 nucleotide regulatory RNA. As with DsrA Rfam:RF00014, RprA is predicted to form three stem-loops. Thus, at least two small RNAs, DsrA and RprA, participate in the positive regulation of RpoS translation. Unlike DsrA, RprA does not have an extensive region of complementarity to the RpoS leader, leaving its mechanism of action unclear. RprA is non-essential." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00034]	45342	\N	\N	sequence	0	SO	RprA_RNA	RprA_RNA
SO:0000370	SO:0000387	\N	"A non-coding RNA less than 200 nucleotides long, usually with a specific secondary structure, that acts to regulate gene expression. These include short ncRNAs such as piRNA, miRNA and siRNAs (among others)." [PMID:28541282, PomBase:al, SO:ma]	SO:0000387	"Translational regulation of the stationary phase sigma factor RpoS is mediated by the formation of a double-stranded RNA stem-loop structure in the upstream region of the rpoS messenger RNA, occluding the translation initiation site. Clones carrying rprA (RpoS regulator RNA) increased the translation of RpoS. The rprA gene encodes a 106 nucleotide regulatory RNA. As with DsrA Rfam:RF00014, RprA is predicted to form three stem-loops. Thus, at least two small RNAs, DsrA and RprA, participate in the positive regulation of RpoS translation. Unlike DsrA, RprA does not have an extensive region of complementarity to the RpoS leader, leaving its mechanism of action unclear. RprA is non-essential." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00034]	489955	\N	SOFA	sequence	1	SO	small_regulatory_ncRNA	RprA_RNA
SO:0000655	SO:0000370	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000387	"Translational regulation of the stationary phase sigma factor RpoS is mediated by the formation of a double-stranded RNA stem-loop structure in the upstream region of the rpoS messenger RNA, occluding the translation initiation site. Clones carrying rprA (RpoS regulator RNA) increased the translation of RpoS. The rprA gene encodes a 106 nucleotide regulatory RNA. As with DsrA Rfam:RF00014, RprA is predicted to form three stem-loops. Thus, at least two small RNAs, DsrA and RprA, participate in the positive regulation of RpoS translation. Unlike DsrA, RprA does not have an extensive region of complementarity to the RpoS leader, leaving its mechanism of action unclear. RprA is non-essential." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00034]	1072406	SOFA	SOFA	sequence	2	SO	ncRNA	RprA_RNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000387	"Translational regulation of the stationary phase sigma factor RpoS is mediated by the formation of a double-stranded RNA stem-loop structure in the upstream region of the rpoS messenger RNA, occluding the translation initiation site. Clones carrying rprA (RpoS regulator RNA) increased the translation of RpoS. The rprA gene encodes a 106 nucleotide regulatory RNA. As with DsrA Rfam:RF00014, RprA is predicted to form three stem-loops. Thus, at least two small RNAs, DsrA and RprA, participate in the positive regulation of RpoS translation. Unlike DsrA, RprA does not have an extensive region of complementarity to the RpoS leader, leaving its mechanism of action unclear. RprA is non-essential." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00034]	1903438	SOFA	SOFA	sequence	3	SO	mature_transcript	RprA_RNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000387	"Translational regulation of the stationary phase sigma factor RpoS is mediated by the formation of a double-stranded RNA stem-loop structure in the upstream region of the rpoS messenger RNA, occluding the translation initiation site. Clones carrying rprA (RpoS regulator RNA) increased the translation of RpoS. The rprA gene encodes a 106 nucleotide regulatory RNA. As with DsrA Rfam:RF00014, RprA is predicted to form three stem-loops. Thus, at least two small RNAs, DsrA and RprA, participate in the positive regulation of RpoS translation. Unlike DsrA, RprA does not have an extensive region of complementarity to the RpoS leader, leaving its mechanism of action unclear. RprA is non-essential." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00034]	2927910	SOFA	SOFA	sequence	4	SO	transcript	RprA_RNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000387	"Translational regulation of the stationary phase sigma factor RpoS is mediated by the formation of a double-stranded RNA stem-loop structure in the upstream region of the rpoS messenger RNA, occluding the translation initiation site. Clones carrying rprA (RpoS regulator RNA) increased the translation of RpoS. The rprA gene encodes a 106 nucleotide regulatory RNA. As with DsrA Rfam:RF00014, RprA is predicted to form three stem-loops. Thus, at least two small RNAs, DsrA and RprA, participate in the positive regulation of RpoS translation. Unlike DsrA, RprA does not have an extensive region of complementarity to the RpoS leader, leaving its mechanism of action unclear. RprA is non-essential." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00034]	4001292	SOFA	SOFA	sequence	5	SO	gene_member_region	RprA_RNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000387	"Translational regulation of the stationary phase sigma factor RpoS is mediated by the formation of a double-stranded RNA stem-loop structure in the upstream region of the rpoS messenger RNA, occluding the translation initiation site. Clones carrying rprA (RpoS regulator RNA) increased the translation of RpoS. The rprA gene encodes a 106 nucleotide regulatory RNA. As with DsrA Rfam:RF00014, RprA is predicted to form three stem-loops. Thus, at least two small RNAs, DsrA and RprA, participate in the positive regulation of RpoS translation. Unlike DsrA, RprA does not have an extensive region of complementarity to the RpoS leader, leaving its mechanism of action unclear. RprA is non-essential." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00034]	4965882	SOFA	SOFA	sequence	6	SO	biological_region	RprA_RNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000387	"Translational regulation of the stationary phase sigma factor RpoS is mediated by the formation of a double-stranded RNA stem-loop structure in the upstream region of the rpoS messenger RNA, occluding the translation initiation site. Clones carrying rprA (RpoS regulator RNA) increased the translation of RpoS. The rprA gene encodes a 106 nucleotide regulatory RNA. As with DsrA Rfam:RF00014, RprA is predicted to form three stem-loops. Thus, at least two small RNAs, DsrA and RprA, participate in the positive regulation of RpoS translation. Unlike DsrA, RprA does not have an extensive region of complementarity to the RpoS leader, leaving its mechanism of action unclear. RprA is non-essential." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00034]	5740852	SOFA	SOFA	sequence	7	SO	region	RprA_RNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000387	"Translational regulation of the stationary phase sigma factor RpoS is mediated by the formation of a double-stranded RNA stem-loop structure in the upstream region of the rpoS messenger RNA, occluding the translation initiation site. Clones carrying rprA (RpoS regulator RNA) increased the translation of RpoS. The rprA gene encodes a 106 nucleotide regulatory RNA. As with DsrA Rfam:RF00014, RprA is predicted to form three stem-loops. Thus, at least two small RNAs, DsrA and RprA, participate in the positive regulation of RpoS translation. Unlike DsrA, RprA does not have an extensive region of complementarity to the RpoS leader, leaving its mechanism of action unclear. RprA is non-essential." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00034]	6310824	SOFA	SOFA	sequence	8	SO	sequence_feature	RprA_RNA
SO:0000388	\N	\N	"The Rev response element (RRE) is encoded within the HIV-env gene. Rev is an essential regulatory protein of HIV that binds an internal loop of the RRE leading, encouraging further Rev-RRE binding. This RNP complex is critical for mRNA export and hence for expression of the HIV structural proteins." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00036]	SO:0000388	"The Rev response element (RRE) is encoded within the HIV-env gene. Rev is an essential regulatory protein of HIV that binds an internal loop of the RRE leading, encouraging further Rev-RRE binding. This RNP complex is critical for mRNA export and hence for expression of the HIV structural proteins." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00036]	45343	\N	\N	sequence	0	SO	RRE_RNA	RRE_RNA
SO:0000370	SO:0000388	\N	"A non-coding RNA less than 200 nucleotides long, usually with a specific secondary structure, that acts to regulate gene expression. These include short ncRNAs such as piRNA, miRNA and siRNAs (among others)." [PMID:28541282, PomBase:al, SO:ma]	SO:0000388	"The Rev response element (RRE) is encoded within the HIV-env gene. Rev is an essential regulatory protein of HIV that binds an internal loop of the RRE leading, encouraging further Rev-RRE binding. This RNP complex is critical for mRNA export and hence for expression of the HIV structural proteins." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00036]	489956	\N	SOFA	sequence	1	SO	small_regulatory_ncRNA	RRE_RNA
SO:0000655	SO:0000370	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000388	"The Rev response element (RRE) is encoded within the HIV-env gene. Rev is an essential regulatory protein of HIV that binds an internal loop of the RRE leading, encouraging further Rev-RRE binding. This RNP complex is critical for mRNA export and hence for expression of the HIV structural proteins." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00036]	1072407	SOFA	SOFA	sequence	2	SO	ncRNA	RRE_RNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000388	"The Rev response element (RRE) is encoded within the HIV-env gene. Rev is an essential regulatory protein of HIV that binds an internal loop of the RRE leading, encouraging further Rev-RRE binding. This RNP complex is critical for mRNA export and hence for expression of the HIV structural proteins." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00036]	1903439	SOFA	SOFA	sequence	3	SO	mature_transcript	RRE_RNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000388	"The Rev response element (RRE) is encoded within the HIV-env gene. Rev is an essential regulatory protein of HIV that binds an internal loop of the RRE leading, encouraging further Rev-RRE binding. This RNP complex is critical for mRNA export and hence for expression of the HIV structural proteins." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00036]	2927911	SOFA	SOFA	sequence	4	SO	transcript	RRE_RNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000388	"The Rev response element (RRE) is encoded within the HIV-env gene. Rev is an essential regulatory protein of HIV that binds an internal loop of the RRE leading, encouraging further Rev-RRE binding. This RNP complex is critical for mRNA export and hence for expression of the HIV structural proteins." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00036]	4001293	SOFA	SOFA	sequence	5	SO	gene_member_region	RRE_RNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000388	"The Rev response element (RRE) is encoded within the HIV-env gene. Rev is an essential regulatory protein of HIV that binds an internal loop of the RRE leading, encouraging further Rev-RRE binding. This RNP complex is critical for mRNA export and hence for expression of the HIV structural proteins." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00036]	4965883	SOFA	SOFA	sequence	6	SO	biological_region	RRE_RNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000388	"The Rev response element (RRE) is encoded within the HIV-env gene. Rev is an essential regulatory protein of HIV that binds an internal loop of the RRE leading, encouraging further Rev-RRE binding. This RNP complex is critical for mRNA export and hence for expression of the HIV structural proteins." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00036]	5740853	SOFA	SOFA	sequence	7	SO	region	RRE_RNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000388	"The Rev response element (RRE) is encoded within the HIV-env gene. Rev is an essential regulatory protein of HIV that binds an internal loop of the RRE leading, encouraging further Rev-RRE binding. This RNP complex is critical for mRNA export and hence for expression of the HIV structural proteins." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00036]	6310825	SOFA	SOFA	sequence	8	SO	sequence_feature	RRE_RNA
SO:0000389	\N	\N	"A 109-nucleotide RNA of E. coli that seems to have a regulatory role on the galactose operon. Changes in Spot 42 levels are implicated in affecting DNA polymerase I levels." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00021]	SO:0000389	"A 109-nucleotide RNA of E. coli that seems to have a regulatory role on the galactose operon. Changes in Spot 42 levels are implicated in affecting DNA polymerase I levels." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00021]	45344	\N	\N	sequence	0	SO	spot_42_RNA	spot_42_RNA
SO:0000370	SO:0000389	\N	"A non-coding RNA less than 200 nucleotides long, usually with a specific secondary structure, that acts to regulate gene expression. These include short ncRNAs such as piRNA, miRNA and siRNAs (among others)." [PMID:28541282, PomBase:al, SO:ma]	SO:0000389	"A 109-nucleotide RNA of E. coli that seems to have a regulatory role on the galactose operon. Changes in Spot 42 levels are implicated in affecting DNA polymerase I levels." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00021]	489957	\N	SOFA	sequence	1	SO	small_regulatory_ncRNA	spot_42_RNA
SO:0000655	SO:0000370	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000389	"A 109-nucleotide RNA of E. coli that seems to have a regulatory role on the galactose operon. Changes in Spot 42 levels are implicated in affecting DNA polymerase I levels." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00021]	1072408	SOFA	SOFA	sequence	2	SO	ncRNA	spot_42_RNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000389	"A 109-nucleotide RNA of E. coli that seems to have a regulatory role on the galactose operon. Changes in Spot 42 levels are implicated in affecting DNA polymerase I levels." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00021]	1903440	SOFA	SOFA	sequence	3	SO	mature_transcript	spot_42_RNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000389	"A 109-nucleotide RNA of E. coli that seems to have a regulatory role on the galactose operon. Changes in Spot 42 levels are implicated in affecting DNA polymerase I levels." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00021]	2927912	SOFA	SOFA	sequence	4	SO	transcript	spot_42_RNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000389	"A 109-nucleotide RNA of E. coli that seems to have a regulatory role on the galactose operon. Changes in Spot 42 levels are implicated in affecting DNA polymerase I levels." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00021]	4001294	SOFA	SOFA	sequence	5	SO	gene_member_region	spot_42_RNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000389	"A 109-nucleotide RNA of E. coli that seems to have a regulatory role on the galactose operon. Changes in Spot 42 levels are implicated in affecting DNA polymerase I levels." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00021]	4965884	SOFA	SOFA	sequence	6	SO	biological_region	spot_42_RNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000389	"A 109-nucleotide RNA of E. coli that seems to have a regulatory role on the galactose operon. Changes in Spot 42 levels are implicated in affecting DNA polymerase I levels." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00021]	5740854	SOFA	SOFA	sequence	7	SO	region	spot_42_RNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000389	"A 109-nucleotide RNA of E. coli that seems to have a regulatory role on the galactose operon. Changes in Spot 42 levels are implicated in affecting DNA polymerase I levels." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00021]	6310826	SOFA	SOFA	sequence	8	SO	sequence_feature	spot_42_RNA
SO:0000390	\N	SOFA	"The RNA component of telomerase, a reverse transcriptase that synthesizes telomeric DNA." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00025]	SO:0000390	"The RNA component of telomerase, a reverse transcriptase that synthesizes telomeric DNA." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00025]	45345	\N	SOFA	sequence	0	SO	telomerase_RNA	telomerase_RNA
SO:0000655	SO:0000390	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000390	"The RNA component of telomerase, a reverse transcriptase that synthesizes telomeric DNA." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00025]	489958	SOFA	SOFA	sequence	1	SO	ncRNA	telomerase_RNA
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000390	"The RNA component of telomerase, a reverse transcriptase that synthesizes telomeric DNA." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00025]	1072409	SOFA	SOFA	sequence	2	SO	mature_transcript	telomerase_RNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000390	"The RNA component of telomerase, a reverse transcriptase that synthesizes telomeric DNA." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00025]	1903441	SOFA	SOFA	sequence	3	SO	transcript	telomerase_RNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000390	"The RNA component of telomerase, a reverse transcriptase that synthesizes telomeric DNA." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00025]	2927913	SOFA	SOFA	sequence	4	SO	gene_member_region	telomerase_RNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000390	"The RNA component of telomerase, a reverse transcriptase that synthesizes telomeric DNA." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00025]	4001295	SOFA	SOFA	sequence	5	SO	biological_region	telomerase_RNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000390	"The RNA component of telomerase, a reverse transcriptase that synthesizes telomeric DNA." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00025]	4965885	SOFA	SOFA	sequence	6	SO	region	telomerase_RNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000390	"The RNA component of telomerase, a reverse transcriptase that synthesizes telomeric DNA." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00025]	5740855	SOFA	SOFA	sequence	7	SO	sequence_feature	telomerase_RNA
SO:0000391	\N	SOFA	"U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00003]	SO:0000391	"U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00003]	45346	\N	SOFA	sequence	0	SO	U1_snRNA	U1_snRNA
SO:0000274	SO:0000391	SOFA	"A small nuclear RNA molecule involved in pre-mRNA splicing and processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:11733745, WB:ems]	SO:0000391	"U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00003]	489959	SOFA	SOFA	sequence	1	SO	snRNA	U1_snRNA
SO:0000655	SO:0000274	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000391	"U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00003]	1072410	SOFA	SOFA	sequence	2	SO	ncRNA	U1_snRNA
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000391	"U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00003]	1903442	SOFA	SOFA	sequence	3	SO	mature_transcript	U1_snRNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000391	"U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00003]	2927914	SOFA	SOFA	sequence	4	SO	transcript	U1_snRNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000391	"U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00003]	4001296	SOFA	SOFA	sequence	5	SO	gene_member_region	U1_snRNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000391	"U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00003]	4965886	SOFA	SOFA	sequence	6	SO	biological_region	U1_snRNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000391	"U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00003]	5740856	SOFA	SOFA	sequence	7	SO	region	U1_snRNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000391	"U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00003]	6310827	SOFA	SOFA	sequence	8	SO	sequence_feature	U1_snRNA
SO:0000392	\N	SOFA	"U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00004]	SO:0000392	"U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00004]	45347	\N	SOFA	sequence	0	SO	U2_snRNA	U2_snRNA
SO:0000274	SO:0000392	SOFA	"A small nuclear RNA molecule involved in pre-mRNA splicing and processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:11733745, WB:ems]	SO:0000392	"U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00004]	489960	SOFA	SOFA	sequence	1	SO	snRNA	U2_snRNA
SO:0000655	SO:0000274	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000392	"U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00004]	1072411	SOFA	SOFA	sequence	2	SO	ncRNA	U2_snRNA
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000392	"U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00004]	1903443	SOFA	SOFA	sequence	3	SO	mature_transcript	U2_snRNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000392	"U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00004]	2927915	SOFA	SOFA	sequence	4	SO	transcript	U2_snRNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000392	"U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00004]	4001297	SOFA	SOFA	sequence	5	SO	gene_member_region	U2_snRNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000392	"U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00004]	4965887	SOFA	SOFA	sequence	6	SO	biological_region	U2_snRNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000392	"U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00004]	5740857	SOFA	SOFA	sequence	7	SO	region	U2_snRNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000392	"U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00004]	6310828	SOFA	SOFA	sequence	8	SO	sequence_feature	U2_snRNA
SO:0000393	\N	SOFA	"U4 small nuclear RNA (U4 snRNA) is a component of the major U2-dependent spliceosome. It forms a duplex with U6, and with each splicing round, it is displaced from U6 (and the spliceosome) in an ATP-dependent manner, allowing U6 to refold and create the active site for splicing catalysis. A recycling process involving protein Prp24 re-anneals U4 and U6." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00015]	SO:0000393	"U4 small nuclear RNA (U4 snRNA) is a component of the major U2-dependent spliceosome. It forms a duplex with U6, and with each splicing round, it is displaced from U6 (and the spliceosome) in an ATP-dependent manner, allowing U6 to refold and create the active site for splicing catalysis. A recycling process involving protein Prp24 re-anneals U4 and U6." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00015]	45348	\N	SOFA	sequence	0	SO	U4_snRNA	U4_snRNA
SO:0000274	SO:0000393	SOFA	"A small nuclear RNA molecule involved in pre-mRNA splicing and processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:11733745, WB:ems]	SO:0000393	"U4 small nuclear RNA (U4 snRNA) is a component of the major U2-dependent spliceosome. It forms a duplex with U6, and with each splicing round, it is displaced from U6 (and the spliceosome) in an ATP-dependent manner, allowing U6 to refold and create the active site for splicing catalysis. A recycling process involving protein Prp24 re-anneals U4 and U6." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00015]	489961	SOFA	SOFA	sequence	1	SO	snRNA	U4_snRNA
SO:0000655	SO:0000274	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000393	"U4 small nuclear RNA (U4 snRNA) is a component of the major U2-dependent spliceosome. It forms a duplex with U6, and with each splicing round, it is displaced from U6 (and the spliceosome) in an ATP-dependent manner, allowing U6 to refold and create the active site for splicing catalysis. A recycling process involving protein Prp24 re-anneals U4 and U6." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00015]	1072412	SOFA	SOFA	sequence	2	SO	ncRNA	U4_snRNA
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000393	"U4 small nuclear RNA (U4 snRNA) is a component of the major U2-dependent spliceosome. It forms a duplex with U6, and with each splicing round, it is displaced from U6 (and the spliceosome) in an ATP-dependent manner, allowing U6 to refold and create the active site for splicing catalysis. A recycling process involving protein Prp24 re-anneals U4 and U6." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00015]	1903444	SOFA	SOFA	sequence	3	SO	mature_transcript	U4_snRNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000393	"U4 small nuclear RNA (U4 snRNA) is a component of the major U2-dependent spliceosome. It forms a duplex with U6, and with each splicing round, it is displaced from U6 (and the spliceosome) in an ATP-dependent manner, allowing U6 to refold and create the active site for splicing catalysis. A recycling process involving protein Prp24 re-anneals U4 and U6." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00015]	2927916	SOFA	SOFA	sequence	4	SO	transcript	U4_snRNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000393	"U4 small nuclear RNA (U4 snRNA) is a component of the major U2-dependent spliceosome. It forms a duplex with U6, and with each splicing round, it is displaced from U6 (and the spliceosome) in an ATP-dependent manner, allowing U6 to refold and create the active site for splicing catalysis. A recycling process involving protein Prp24 re-anneals U4 and U6." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00015]	4001298	SOFA	SOFA	sequence	5	SO	gene_member_region	U4_snRNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000393	"U4 small nuclear RNA (U4 snRNA) is a component of the major U2-dependent spliceosome. It forms a duplex with U6, and with each splicing round, it is displaced from U6 (and the spliceosome) in an ATP-dependent manner, allowing U6 to refold and create the active site for splicing catalysis. A recycling process involving protein Prp24 re-anneals U4 and U6." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00015]	4965888	SOFA	SOFA	sequence	6	SO	biological_region	U4_snRNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000393	"U4 small nuclear RNA (U4 snRNA) is a component of the major U2-dependent spliceosome. It forms a duplex with U6, and with each splicing round, it is displaced from U6 (and the spliceosome) in an ATP-dependent manner, allowing U6 to refold and create the active site for splicing catalysis. A recycling process involving protein Prp24 re-anneals U4 and U6." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00015]	5740858	SOFA	SOFA	sequence	7	SO	region	U4_snRNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000393	"U4 small nuclear RNA (U4 snRNA) is a component of the major U2-dependent spliceosome. It forms a duplex with U6, and with each splicing round, it is displaced from U6 (and the spliceosome) in an ATP-dependent manner, allowing U6 to refold and create the active site for splicing catalysis. A recycling process involving protein Prp24 re-anneals U4 and U6." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00015]	6310829	SOFA	SOFA	sequence	8	SO	sequence_feature	U4_snRNA
SO:0000394	\N	SOFA	"An snRNA required for the splicing of the minor U12-dependent class of eukaryotic nuclear introns. It forms a base paired complex with U6atac_snRNA (SO:0000397)." [PMID:=12409455]	SO:0000394	"An snRNA required for the splicing of the minor U12-dependent class of eukaryotic nuclear introns. It forms a base paired complex with U6atac_snRNA (SO:0000397)." [PMID:=12409455]	45349	\N	SOFA	sequence	0	SO	U4atac_snRNA	U4atac_snRNA
SO:0000274	SO:0000394	SOFA	"A small nuclear RNA molecule involved in pre-mRNA splicing and processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:11733745, WB:ems]	SO:0000394	"An snRNA required for the splicing of the minor U12-dependent class of eukaryotic nuclear introns. It forms a base paired complex with U6atac_snRNA (SO:0000397)." [PMID:=12409455]	489962	SOFA	SOFA	sequence	1	SO	snRNA	U4atac_snRNA
SO:0000655	SO:0000274	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000394	"An snRNA required for the splicing of the minor U12-dependent class of eukaryotic nuclear introns. It forms a base paired complex with U6atac_snRNA (SO:0000397)." [PMID:=12409455]	1072413	SOFA	SOFA	sequence	2	SO	ncRNA	U4atac_snRNA
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000394	"An snRNA required for the splicing of the minor U12-dependent class of eukaryotic nuclear introns. It forms a base paired complex with U6atac_snRNA (SO:0000397)." [PMID:=12409455]	1903445	SOFA	SOFA	sequence	3	SO	mature_transcript	U4atac_snRNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000394	"An snRNA required for the splicing of the minor U12-dependent class of eukaryotic nuclear introns. It forms a base paired complex with U6atac_snRNA (SO:0000397)." [PMID:=12409455]	2927917	SOFA	SOFA	sequence	4	SO	transcript	U4atac_snRNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000394	"An snRNA required for the splicing of the minor U12-dependent class of eukaryotic nuclear introns. It forms a base paired complex with U6atac_snRNA (SO:0000397)." [PMID:=12409455]	4001299	SOFA	SOFA	sequence	5	SO	gene_member_region	U4atac_snRNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000394	"An snRNA required for the splicing of the minor U12-dependent class of eukaryotic nuclear introns. It forms a base paired complex with U6atac_snRNA (SO:0000397)." [PMID:=12409455]	4965889	SOFA	SOFA	sequence	6	SO	biological_region	U4atac_snRNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000394	"An snRNA required for the splicing of the minor U12-dependent class of eukaryotic nuclear introns. It forms a base paired complex with U6atac_snRNA (SO:0000397)." [PMID:=12409455]	5740859	SOFA	SOFA	sequence	7	SO	region	U4atac_snRNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000394	"An snRNA required for the splicing of the minor U12-dependent class of eukaryotic nuclear introns. It forms a base paired complex with U6atac_snRNA (SO:0000397)." [PMID:=12409455]	6310830	SOFA	SOFA	sequence	8	SO	sequence_feature	U4atac_snRNA
SO:0000395	\N	SOFA	"U5 RNA is a component of both types of known spliceosome. The precise function of this molecule is unknown, though it is known that the 5' loop is required for splice site selection and p220 binding, and that both the 3' stem-loop and the Sm site are important for Sm protein binding and cap methylation." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00020]	SO:0000395	"U5 RNA is a component of both types of known spliceosome. The precise function of this molecule is unknown, though it is known that the 5' loop is required for splice site selection and p220 binding, and that both the 3' stem-loop and the Sm site are important for Sm protein binding and cap methylation." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00020]	45350	\N	SOFA	sequence	0	SO	U5_snRNA	U5_snRNA
SO:0000274	SO:0000395	SOFA	"A small nuclear RNA molecule involved in pre-mRNA splicing and processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:11733745, WB:ems]	SO:0000395	"U5 RNA is a component of both types of known spliceosome. The precise function of this molecule is unknown, though it is known that the 5' loop is required for splice site selection and p220 binding, and that both the 3' stem-loop and the Sm site are important for Sm protein binding and cap methylation." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00020]	489963	SOFA	SOFA	sequence	1	SO	snRNA	U5_snRNA
SO:0000655	SO:0000274	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000395	"U5 RNA is a component of both types of known spliceosome. The precise function of this molecule is unknown, though it is known that the 5' loop is required for splice site selection and p220 binding, and that both the 3' stem-loop and the Sm site are important for Sm protein binding and cap methylation." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00020]	1072414	SOFA	SOFA	sequence	2	SO	ncRNA	U5_snRNA
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000395	"U5 RNA is a component of both types of known spliceosome. The precise function of this molecule is unknown, though it is known that the 5' loop is required for splice site selection and p220 binding, and that both the 3' stem-loop and the Sm site are important for Sm protein binding and cap methylation." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00020]	1903446	SOFA	SOFA	sequence	3	SO	mature_transcript	U5_snRNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000395	"U5 RNA is a component of both types of known spliceosome. The precise function of this molecule is unknown, though it is known that the 5' loop is required for splice site selection and p220 binding, and that both the 3' stem-loop and the Sm site are important for Sm protein binding and cap methylation." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00020]	2927918	SOFA	SOFA	sequence	4	SO	transcript	U5_snRNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000395	"U5 RNA is a component of both types of known spliceosome. The precise function of this molecule is unknown, though it is known that the 5' loop is required for splice site selection and p220 binding, and that both the 3' stem-loop and the Sm site are important for Sm protein binding and cap methylation." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00020]	4001300	SOFA	SOFA	sequence	5	SO	gene_member_region	U5_snRNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000395	"U5 RNA is a component of both types of known spliceosome. The precise function of this molecule is unknown, though it is known that the 5' loop is required for splice site selection and p220 binding, and that both the 3' stem-loop and the Sm site are important for Sm protein binding and cap methylation." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00020]	4965890	SOFA	SOFA	sequence	6	SO	biological_region	U5_snRNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000395	"U5 RNA is a component of both types of known spliceosome. The precise function of this molecule is unknown, though it is known that the 5' loop is required for splice site selection and p220 binding, and that both the 3' stem-loop and the Sm site are important for Sm protein binding and cap methylation." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00020]	5740860	SOFA	SOFA	sequence	7	SO	region	U5_snRNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000395	"U5 RNA is a component of both types of known spliceosome. The precise function of this molecule is unknown, though it is known that the 5' loop is required for splice site selection and p220 binding, and that both the 3' stem-loop and the Sm site are important for Sm protein binding and cap methylation." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00020]	6310831	SOFA	SOFA	sequence	8	SO	sequence_feature	U5_snRNA
SO:0000396	\N	SOFA	"U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00015]	SO:0000396	"U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00015]	45351	\N	SOFA	sequence	0	SO	U6_snRNA	U6_snRNA
SO:0000274	SO:0000396	SOFA	"A small nuclear RNA molecule involved in pre-mRNA splicing and processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:11733745, WB:ems]	SO:0000396	"U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00015]	489964	SOFA	SOFA	sequence	1	SO	snRNA	U6_snRNA
SO:0000655	SO:0000274	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000396	"U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00015]	1072415	SOFA	SOFA	sequence	2	SO	ncRNA	U6_snRNA
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000396	"U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00015]	1903447	SOFA	SOFA	sequence	3	SO	mature_transcript	U6_snRNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000396	"U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00015]	2927919	SOFA	SOFA	sequence	4	SO	transcript	U6_snRNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000396	"U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00015]	4001301	SOFA	SOFA	sequence	5	SO	gene_member_region	U6_snRNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000396	"U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00015]	4965891	SOFA	SOFA	sequence	6	SO	biological_region	U6_snRNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000396	"U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00015]	5740861	SOFA	SOFA	sequence	7	SO	region	U6_snRNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000396	"U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00015]	6310832	SOFA	SOFA	sequence	8	SO	sequence_feature	U6_snRNA
SO:0000397	\N	SOFA	"U6atac_snRNA is an snRNA required for the splicing of the minor U12-dependent class of eukaryotic nuclear introns. It forms a base paired complex with U4atac_snRNA (SO:0000394)." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=retrieve&db=pubmed&list_uids=12409455&dopt=Abstract]	SO:0000397	"U6atac_snRNA is an snRNA required for the splicing of the minor U12-dependent class of eukaryotic nuclear introns. It forms a base paired complex with U4atac_snRNA (SO:0000394)." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=retrieve&db=pubmed&list_uids=12409455&dopt=Abstract]	45352	\N	SOFA	sequence	0	SO	U6atac_snRNA	U6atac_snRNA
SO:0000274	SO:0000397	SOFA	"A small nuclear RNA molecule involved in pre-mRNA splicing and processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:11733745, WB:ems]	SO:0000397	"U6atac_snRNA is an snRNA required for the splicing of the minor U12-dependent class of eukaryotic nuclear introns. It forms a base paired complex with U4atac_snRNA (SO:0000394)." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=retrieve&db=pubmed&list_uids=12409455&dopt=Abstract]	489965	SOFA	SOFA	sequence	1	SO	snRNA	U6atac_snRNA
SO:0000655	SO:0000274	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000397	"U6atac_snRNA is an snRNA required for the splicing of the minor U12-dependent class of eukaryotic nuclear introns. It forms a base paired complex with U4atac_snRNA (SO:0000394)." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=retrieve&db=pubmed&list_uids=12409455&dopt=Abstract]	1072416	SOFA	SOFA	sequence	2	SO	ncRNA	U6atac_snRNA
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000397	"U6atac_snRNA is an snRNA required for the splicing of the minor U12-dependent class of eukaryotic nuclear introns. It forms a base paired complex with U4atac_snRNA (SO:0000394)." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=retrieve&db=pubmed&list_uids=12409455&dopt=Abstract]	1903448	SOFA	SOFA	sequence	3	SO	mature_transcript	U6atac_snRNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000397	"U6atac_snRNA is an snRNA required for the splicing of the minor U12-dependent class of eukaryotic nuclear introns. It forms a base paired complex with U4atac_snRNA (SO:0000394)." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=retrieve&db=pubmed&list_uids=12409455&dopt=Abstract]	2927920	SOFA	SOFA	sequence	4	SO	transcript	U6atac_snRNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000397	"U6atac_snRNA is an snRNA required for the splicing of the minor U12-dependent class of eukaryotic nuclear introns. It forms a base paired complex with U4atac_snRNA (SO:0000394)." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=retrieve&db=pubmed&list_uids=12409455&dopt=Abstract]	4001302	SOFA	SOFA	sequence	5	SO	gene_member_region	U6atac_snRNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000397	"U6atac_snRNA is an snRNA required for the splicing of the minor U12-dependent class of eukaryotic nuclear introns. It forms a base paired complex with U4atac_snRNA (SO:0000394)." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=retrieve&db=pubmed&list_uids=12409455&dopt=Abstract]	4965892	SOFA	SOFA	sequence	6	SO	biological_region	U6atac_snRNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000397	"U6atac_snRNA is an snRNA required for the splicing of the minor U12-dependent class of eukaryotic nuclear introns. It forms a base paired complex with U4atac_snRNA (SO:0000394)." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=retrieve&db=pubmed&list_uids=12409455&dopt=Abstract]	5740862	SOFA	SOFA	sequence	7	SO	region	U6atac_snRNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000397	"U6atac_snRNA is an snRNA required for the splicing of the minor U12-dependent class of eukaryotic nuclear introns. It forms a base paired complex with U4atac_snRNA (SO:0000394)." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=retrieve&db=pubmed&list_uids=12409455&dopt=Abstract]	6310833	SOFA	SOFA	sequence	8	SO	sequence_feature	U6atac_snRNA
SO:0000398	\N	SOFA	"U11 snRNA plays a role in splicing of the minor U12-dependent class of eukaryotic nuclear introns, similar to U1 snRNA in the major class spliceosome it base pairs to the conserved 5' splice site sequence." [PMID:9622129]	SO:0000398	"U11 snRNA plays a role in splicing of the minor U12-dependent class of eukaryotic nuclear introns, similar to U1 snRNA in the major class spliceosome it base pairs to the conserved 5' splice site sequence." [PMID:9622129]	45353	\N	SOFA	sequence	0	SO	U11_snRNA	U11_snRNA
SO:0000274	SO:0000398	SOFA	"A small nuclear RNA molecule involved in pre-mRNA splicing and processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:11733745, WB:ems]	SO:0000398	"U11 snRNA plays a role in splicing of the minor U12-dependent class of eukaryotic nuclear introns, similar to U1 snRNA in the major class spliceosome it base pairs to the conserved 5' splice site sequence." [PMID:9622129]	489966	SOFA	SOFA	sequence	1	SO	snRNA	U11_snRNA
SO:0000655	SO:0000274	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000398	"U11 snRNA plays a role in splicing of the minor U12-dependent class of eukaryotic nuclear introns, similar to U1 snRNA in the major class spliceosome it base pairs to the conserved 5' splice site sequence." [PMID:9622129]	1072417	SOFA	SOFA	sequence	2	SO	ncRNA	U11_snRNA
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000398	"U11 snRNA plays a role in splicing of the minor U12-dependent class of eukaryotic nuclear introns, similar to U1 snRNA in the major class spliceosome it base pairs to the conserved 5' splice site sequence." [PMID:9622129]	1903449	SOFA	SOFA	sequence	3	SO	mature_transcript	U11_snRNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000398	"U11 snRNA plays a role in splicing of the minor U12-dependent class of eukaryotic nuclear introns, similar to U1 snRNA in the major class spliceosome it base pairs to the conserved 5' splice site sequence." [PMID:9622129]	2927921	SOFA	SOFA	sequence	4	SO	transcript	U11_snRNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000398	"U11 snRNA plays a role in splicing of the minor U12-dependent class of eukaryotic nuclear introns, similar to U1 snRNA in the major class spliceosome it base pairs to the conserved 5' splice site sequence." [PMID:9622129]	4001303	SOFA	SOFA	sequence	5	SO	gene_member_region	U11_snRNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000398	"U11 snRNA plays a role in splicing of the minor U12-dependent class of eukaryotic nuclear introns, similar to U1 snRNA in the major class spliceosome it base pairs to the conserved 5' splice site sequence." [PMID:9622129]	4965893	SOFA	SOFA	sequence	6	SO	biological_region	U11_snRNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000398	"U11 snRNA plays a role in splicing of the minor U12-dependent class of eukaryotic nuclear introns, similar to U1 snRNA in the major class spliceosome it base pairs to the conserved 5' splice site sequence." [PMID:9622129]	5740863	SOFA	SOFA	sequence	7	SO	region	U11_snRNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000398	"U11 snRNA plays a role in splicing of the minor U12-dependent class of eukaryotic nuclear introns, similar to U1 snRNA in the major class spliceosome it base pairs to the conserved 5' splice site sequence." [PMID:9622129]	6310834	SOFA	SOFA	sequence	8	SO	sequence_feature	U11_snRNA
SO:0000399	\N	SOFA	"The U12 small nuclear (snRNA), together with U4atac/U6atac, U5, and U11 snRNAs and associated proteins, forms a spliceosome that cleaves a divergent class of low-abundance pre-mRNA introns." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00007]	SO:0000399	"The U12 small nuclear (snRNA), together with U4atac/U6atac, U5, and U11 snRNAs and associated proteins, forms a spliceosome that cleaves a divergent class of low-abundance pre-mRNA introns." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00007]	45354	\N	SOFA	sequence	0	SO	U12_snRNA	U12_snRNA
SO:0000274	SO:0000399	SOFA	"A small nuclear RNA molecule involved in pre-mRNA splicing and processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:11733745, WB:ems]	SO:0000399	"The U12 small nuclear (snRNA), together with U4atac/U6atac, U5, and U11 snRNAs and associated proteins, forms a spliceosome that cleaves a divergent class of low-abundance pre-mRNA introns." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00007]	489967	SOFA	SOFA	sequence	1	SO	snRNA	U12_snRNA
SO:0000655	SO:0000274	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000399	"The U12 small nuclear (snRNA), together with U4atac/U6atac, U5, and U11 snRNAs and associated proteins, forms a spliceosome that cleaves a divergent class of low-abundance pre-mRNA introns." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00007]	1072418	SOFA	SOFA	sequence	2	SO	ncRNA	U12_snRNA
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000399	"The U12 small nuclear (snRNA), together with U4atac/U6atac, U5, and U11 snRNAs and associated proteins, forms a spliceosome that cleaves a divergent class of low-abundance pre-mRNA introns." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00007]	1903450	SOFA	SOFA	sequence	3	SO	mature_transcript	U12_snRNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000399	"The U12 small nuclear (snRNA), together with U4atac/U6atac, U5, and U11 snRNAs and associated proteins, forms a spliceosome that cleaves a divergent class of low-abundance pre-mRNA introns." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00007]	2927922	SOFA	SOFA	sequence	4	SO	transcript	U12_snRNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000399	"The U12 small nuclear (snRNA), together with U4atac/U6atac, U5, and U11 snRNAs and associated proteins, forms a spliceosome that cleaves a divergent class of low-abundance pre-mRNA introns." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00007]	4001304	SOFA	SOFA	sequence	5	SO	gene_member_region	U12_snRNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000399	"The U12 small nuclear (snRNA), together with U4atac/U6atac, U5, and U11 snRNAs and associated proteins, forms a spliceosome that cleaves a divergent class of low-abundance pre-mRNA introns." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00007]	4965894	SOFA	SOFA	sequence	6	SO	biological_region	U12_snRNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000399	"The U12 small nuclear (snRNA), together with U4atac/U6atac, U5, and U11 snRNAs and associated proteins, forms a spliceosome that cleaves a divergent class of low-abundance pre-mRNA introns." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00007]	5740864	SOFA	SOFA	sequence	7	SO	region	U12_snRNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000399	"The U12 small nuclear (snRNA), together with U4atac/U6atac, U5, and U11 snRNAs and associated proteins, forms a spliceosome that cleaves a divergent class of low-abundance pre-mRNA introns." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00007]	6310835	SOFA	SOFA	sequence	8	SO	sequence_feature	U12_snRNA
SO:0000400	\N	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000400	"An attribute describes a quality of sequence." [SO:ke]	45355	\N	\N	sequence	0	SO	sequence_attribute	sequence_attribute
SO:0000401	\N	\N	"" []	SO:0000401	"" []	45356	\N	\N	sequence	0	SO	gene_attribute	gene_attribute
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000401	"" []	489968	\N	\N	sequence	1	SO	feature_attribute	gene_attribute
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000401	"" []	1072419	\N	\N	sequence	2	SO	sequence_attribute	gene_attribute
SO:0000403	\N	SOFA	"U14 small nucleolar RNA (U14 snoRNA) is required for early cleavages of eukaryotic precursor rRNAs. In yeasts, this molecule possess a stem-loop region (known as the Y-domain) which is essential for function. A similar structure, but with a different consensus sequence, is found in plants, but is absent in vertebrates." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00016, PMID:2551119]	SO:0000403	"U14 small nucleolar RNA (U14 snoRNA) is required for early cleavages of eukaryotic precursor rRNAs. In yeasts, this molecule possess a stem-loop region (known as the Y-domain) which is essential for function. A similar structure, but with a different consensus sequence, is found in plants, but is absent in vertebrates." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00016, PMID:2551119]	45357	\N	SOFA	sequence	0	SO	U14_snoRNA	U14_snoRNA
SO:0000593	SO:0000403	SOFA	"Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'." [http://www.bio.umass.edu/biochem/rna-sequence/Yeast_snoRNA_Database/snoRNA_DataBase.html]	SO:0000403	"U14 small nucleolar RNA (U14 snoRNA) is required for early cleavages of eukaryotic precursor rRNAs. In yeasts, this molecule possess a stem-loop region (known as the Y-domain) which is essential for function. A similar structure, but with a different consensus sequence, is found in plants, but is absent in vertebrates." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00016, PMID:2551119]	489969	SOFA	SOFA	sequence	1	SO	C_D_box_snoRNA	U14_snoRNA
SO:0000275	SO:0000593	SOFA	"A snoRNA (small nucleolar RNA) is any one of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA." [GOC:kgc]	SO:0000403	"U14 small nucleolar RNA (U14 snoRNA) is required for early cleavages of eukaryotic precursor rRNAs. In yeasts, this molecule possess a stem-loop region (known as the Y-domain) which is essential for function. A similar structure, but with a different consensus sequence, is found in plants, but is absent in vertebrates." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00016, PMID:2551119]	1072420	SOFA	SOFA	sequence	2	SO	snoRNA	U14_snoRNA
SO:0000655	SO:0000275	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000403	"U14 small nucleolar RNA (U14 snoRNA) is required for early cleavages of eukaryotic precursor rRNAs. In yeasts, this molecule possess a stem-loop region (known as the Y-domain) which is essential for function. A similar structure, but with a different consensus sequence, is found in plants, but is absent in vertebrates." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00016, PMID:2551119]	1903451	SOFA	SOFA	sequence	3	SO	ncRNA	U14_snoRNA
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000403	"U14 small nucleolar RNA (U14 snoRNA) is required for early cleavages of eukaryotic precursor rRNAs. In yeasts, this molecule possess a stem-loop region (known as the Y-domain) which is essential for function. A similar structure, but with a different consensus sequence, is found in plants, but is absent in vertebrates." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00016, PMID:2551119]	2927923	SOFA	SOFA	sequence	4	SO	mature_transcript	U14_snoRNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000403	"U14 small nucleolar RNA (U14 snoRNA) is required for early cleavages of eukaryotic precursor rRNAs. In yeasts, this molecule possess a stem-loop region (known as the Y-domain) which is essential for function. A similar structure, but with a different consensus sequence, is found in plants, but is absent in vertebrates." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00016, PMID:2551119]	4001305	SOFA	SOFA	sequence	5	SO	transcript	U14_snoRNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000403	"U14 small nucleolar RNA (U14 snoRNA) is required for early cleavages of eukaryotic precursor rRNAs. In yeasts, this molecule possess a stem-loop region (known as the Y-domain) which is essential for function. A similar structure, but with a different consensus sequence, is found in plants, but is absent in vertebrates." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00016, PMID:2551119]	4965895	SOFA	SOFA	sequence	6	SO	gene_member_region	U14_snoRNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000403	"U14 small nucleolar RNA (U14 snoRNA) is required for early cleavages of eukaryotic precursor rRNAs. In yeasts, this molecule possess a stem-loop region (known as the Y-domain) which is essential for function. A similar structure, but with a different consensus sequence, is found in plants, but is absent in vertebrates." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00016, PMID:2551119]	5740865	SOFA	SOFA	sequence	7	SO	biological_region	U14_snoRNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000403	"U14 small nucleolar RNA (U14 snoRNA) is required for early cleavages of eukaryotic precursor rRNAs. In yeasts, this molecule possess a stem-loop region (known as the Y-domain) which is essential for function. A similar structure, but with a different consensus sequence, is found in plants, but is absent in vertebrates." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00016, PMID:2551119]	6310836	SOFA	SOFA	sequence	8	SO	region	U14_snoRNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000403	"U14 small nucleolar RNA (U14 snoRNA) is required for early cleavages of eukaryotic precursor rRNAs. In yeasts, this molecule possess a stem-loop region (known as the Y-domain) which is essential for function. A similar structure, but with a different consensus sequence, is found in plants, but is absent in vertebrates." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00016, PMID:2551119]	6699230	SOFA	SOFA	sequence	9	SO	sequence_feature	U14_snoRNA
SO:0000404	\N	SOFA	"A family of RNAs are found as part of the enigmatic vault ribonucleoprotein complex. The complex consists of a major vault protein (MVP), two minor vault proteins (VPARP and TEP1), and several small untranslated RNA molecules. It has been suggested that the vault complex is involved in drug resistance." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00006]	SO:0000404	"A family of RNAs are found as part of the enigmatic vault ribonucleoprotein complex. The complex consists of a major vault protein (MVP), two minor vault proteins (VPARP and TEP1), and several small untranslated RNA molecules. It has been suggested that the vault complex is involved in drug resistance." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00006]	45358	\N	SOFA	sequence	0	SO	vault_RNA	vault_RNA
SO:0000655	SO:0000404	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000404	"A family of RNAs are found as part of the enigmatic vault ribonucleoprotein complex. The complex consists of a major vault protein (MVP), two minor vault proteins (VPARP and TEP1), and several small untranslated RNA molecules. It has been suggested that the vault complex is involved in drug resistance." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00006]	489970	SOFA	SOFA	sequence	1	SO	ncRNA	vault_RNA
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000404	"A family of RNAs are found as part of the enigmatic vault ribonucleoprotein complex. The complex consists of a major vault protein (MVP), two minor vault proteins (VPARP and TEP1), and several small untranslated RNA molecules. It has been suggested that the vault complex is involved in drug resistance." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00006]	1072421	SOFA	SOFA	sequence	2	SO	mature_transcript	vault_RNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000404	"A family of RNAs are found as part of the enigmatic vault ribonucleoprotein complex. The complex consists of a major vault protein (MVP), two minor vault proteins (VPARP and TEP1), and several small untranslated RNA molecules. It has been suggested that the vault complex is involved in drug resistance." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00006]	1903452	SOFA	SOFA	sequence	3	SO	transcript	vault_RNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000404	"A family of RNAs are found as part of the enigmatic vault ribonucleoprotein complex. The complex consists of a major vault protein (MVP), two minor vault proteins (VPARP and TEP1), and several small untranslated RNA molecules. It has been suggested that the vault complex is involved in drug resistance." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00006]	2927924	SOFA	SOFA	sequence	4	SO	gene_member_region	vault_RNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000404	"A family of RNAs are found as part of the enigmatic vault ribonucleoprotein complex. The complex consists of a major vault protein (MVP), two minor vault proteins (VPARP and TEP1), and several small untranslated RNA molecules. It has been suggested that the vault complex is involved in drug resistance." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00006]	4001306	SOFA	SOFA	sequence	5	SO	biological_region	vault_RNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000404	"A family of RNAs are found as part of the enigmatic vault ribonucleoprotein complex. The complex consists of a major vault protein (MVP), two minor vault proteins (VPARP and TEP1), and several small untranslated RNA molecules. It has been suggested that the vault complex is involved in drug resistance." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00006]	4965896	SOFA	SOFA	sequence	6	SO	region	vault_RNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000404	"A family of RNAs are found as part of the enigmatic vault ribonucleoprotein complex. The complex consists of a major vault protein (MVP), two minor vault proteins (VPARP and TEP1), and several small untranslated RNA molecules. It has been suggested that the vault complex is involved in drug resistance." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00006]	5740866	SOFA	SOFA	sequence	7	SO	sequence_feature	vault_RNA
SO:0000405	\N	SOFA	"Y RNAs are components of the Ro ribonucleoprotein particle (Ro RNP), in association with Ro60 and La proteins. The Y RNAs and Ro60 and La proteins are well conserved, but the function of the Ro RNP is not known. In humans the RNA component can be one of four small RNAs: hY1, hY3, hY4 and hY5. These small RNAs are predicted to fold into a conserved secondary structure containing three stem structures. The largest of the four, hY1, contains an additional hairpin." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00019]	SO:0000405	"Y RNAs are components of the Ro ribonucleoprotein particle (Ro RNP), in association with Ro60 and La proteins. The Y RNAs and Ro60 and La proteins are well conserved, but the function of the Ro RNP is not known. In humans the RNA component can be one of four small RNAs: hY1, hY3, hY4 and hY5. These small RNAs are predicted to fold into a conserved secondary structure containing three stem structures. The largest of the four, hY1, contains an additional hairpin." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00019]	45359	\N	SOFA	sequence	0	SO	Y_RNA	Y_RNA
SO:0000655	SO:0000405	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000405	"Y RNAs are components of the Ro ribonucleoprotein particle (Ro RNP), in association with Ro60 and La proteins. The Y RNAs and Ro60 and La proteins are well conserved, but the function of the Ro RNP is not known. In humans the RNA component can be one of four small RNAs: hY1, hY3, hY4 and hY5. These small RNAs are predicted to fold into a conserved secondary structure containing three stem structures. The largest of the four, hY1, contains an additional hairpin." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00019]	489971	SOFA	SOFA	sequence	1	SO	ncRNA	Y_RNA
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000405	"Y RNAs are components of the Ro ribonucleoprotein particle (Ro RNP), in association with Ro60 and La proteins. The Y RNAs and Ro60 and La proteins are well conserved, but the function of the Ro RNP is not known. In humans the RNA component can be one of four small RNAs: hY1, hY3, hY4 and hY5. These small RNAs are predicted to fold into a conserved secondary structure containing three stem structures. The largest of the four, hY1, contains an additional hairpin." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00019]	1072422	SOFA	SOFA	sequence	2	SO	mature_transcript	Y_RNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000405	"Y RNAs are components of the Ro ribonucleoprotein particle (Ro RNP), in association with Ro60 and La proteins. The Y RNAs and Ro60 and La proteins are well conserved, but the function of the Ro RNP is not known. In humans the RNA component can be one of four small RNAs: hY1, hY3, hY4 and hY5. These small RNAs are predicted to fold into a conserved secondary structure containing three stem structures. The largest of the four, hY1, contains an additional hairpin." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00019]	1903453	SOFA	SOFA	sequence	3	SO	transcript	Y_RNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000405	"Y RNAs are components of the Ro ribonucleoprotein particle (Ro RNP), in association with Ro60 and La proteins. The Y RNAs and Ro60 and La proteins are well conserved, but the function of the Ro RNP is not known. In humans the RNA component can be one of four small RNAs: hY1, hY3, hY4 and hY5. These small RNAs are predicted to fold into a conserved secondary structure containing three stem structures. The largest of the four, hY1, contains an additional hairpin." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00019]	2927925	SOFA	SOFA	sequence	4	SO	gene_member_region	Y_RNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000405	"Y RNAs are components of the Ro ribonucleoprotein particle (Ro RNP), in association with Ro60 and La proteins. The Y RNAs and Ro60 and La proteins are well conserved, but the function of the Ro RNP is not known. In humans the RNA component can be one of four small RNAs: hY1, hY3, hY4 and hY5. These small RNAs are predicted to fold into a conserved secondary structure containing three stem structures. The largest of the four, hY1, contains an additional hairpin." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00019]	4001307	SOFA	SOFA	sequence	5	SO	biological_region	Y_RNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000405	"Y RNAs are components of the Ro ribonucleoprotein particle (Ro RNP), in association with Ro60 and La proteins. The Y RNAs and Ro60 and La proteins are well conserved, but the function of the Ro RNP is not known. In humans the RNA component can be one of four small RNAs: hY1, hY3, hY4 and hY5. These small RNAs are predicted to fold into a conserved secondary structure containing three stem structures. The largest of the four, hY1, contains an additional hairpin." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00019]	4965897	SOFA	SOFA	sequence	6	SO	region	Y_RNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000405	"Y RNAs are components of the Ro ribonucleoprotein particle (Ro RNP), in association with Ro60 and La proteins. The Y RNAs and Ro60 and La proteins are well conserved, but the function of the Ro RNP is not known. In humans the RNA component can be one of four small RNAs: hY1, hY3, hY4 and hY5. These small RNAs are predicted to fold into a conserved secondary structure containing three stem structures. The largest of the four, hY1, contains an additional hairpin." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00019]	5740867	SOFA	SOFA	sequence	7	SO	sequence_feature	Y_RNA
SO:0000406	\N	\N	"An intron within an intron. Twintrons are group II or III introns, into which another group II or III intron has been transposed." [PMID:1899376, PMID:7823908]	SO:0000406	"An intron within an intron. Twintrons are group II or III introns, into which another group II or III intron has been transposed." [PMID:1899376, PMID:7823908]	45360	\N	\N	sequence	0	SO	twintron	twintron
SO:0000188	SO:0000406	\N	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000406	"An intron within an intron. Twintrons are group II or III introns, into which another group II or III intron has been transposed." [PMID:1899376, PMID:7823908]	489972	\N	SOFA	sequence	1	SO	intron	twintron
SO:0000835	SO:0000188	\N	"A part of a primary transcript." [SO:ke]	SO:0000406	"An intron within an intron. Twintrons are group II or III introns, into which another group II or III intron has been transposed." [PMID:1899376, PMID:7823908]	1072423	SOFA	SOFA	sequence	2	SO	primary_transcript_region	twintron
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000406	"An intron within an intron. Twintrons are group II or III introns, into which another group II or III intron has been transposed." [PMID:1899376, PMID:7823908]	1903454	SOFA	SOFA	sequence	3	SO	primary_transcript	twintron
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0000406	"An intron within an intron. Twintrons are group II or III introns, into which another group II or III intron has been transposed." [PMID:1899376, PMID:7823908]	1903455	SOFA	SOFA	sequence	3	SO	transcript_region	twintron
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000406	"An intron within an intron. Twintrons are group II or III introns, into which another group II or III intron has been transposed." [PMID:1899376, PMID:7823908]	2927926	SOFA	SOFA	sequence	4	SO	transcript	twintron
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000406	"An intron within an intron. Twintrons are group II or III introns, into which another group II or III intron has been transposed." [PMID:1899376, PMID:7823908]	2927927	SOFA	SOFA	sequence	4	SO	transcript	twintron
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000406	"An intron within an intron. Twintrons are group II or III introns, into which another group II or III intron has been transposed." [PMID:1899376, PMID:7823908]	2927928	SOFA	SOFA	sequence	4	SO	biological_region	twintron
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000406	"An intron within an intron. Twintrons are group II or III introns, into which another group II or III intron has been transposed." [PMID:1899376, PMID:7823908]	4001308	SOFA	SOFA	sequence	5	SO	gene_member_region	twintron
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000406	"An intron within an intron. Twintrons are group II or III introns, into which another group II or III intron has been transposed." [PMID:1899376, PMID:7823908]	5740868	SOFA	SOFA	sequence	7	SO	region	twintron
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000406	"An intron within an intron. Twintrons are group II or III introns, into which another group II or III intron has been transposed." [PMID:1899376, PMID:7823908]	4965898	SOFA	SOFA	sequence	6	SO	biological_region	twintron
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000406	"An intron within an intron. Twintrons are group II or III introns, into which another group II or III intron has been transposed." [PMID:1899376, PMID:7823908]	5996377	SOFA	SOFA	sequence	8	SO	sequence_feature	twintron
SO:0000407	\N	SOFA	"A large polynucleotide in eukaryotes, which functions as the small subunit of the ribosome." [SO:ke]	SO:0000407	"A large polynucleotide in eukaryotes, which functions as the small subunit of the ribosome." [SO:ke]	45361	\N	SOFA	sequence	0	SO	rRNA_18S	rRNA_18S
SO:0000650	SO:0000407	SOFA	"Ribosomal RNA transcript that structures the small subunit of the ribosome." [SO:ke]	SO:0000407	"A large polynucleotide in eukaryotes, which functions as the small subunit of the ribosome." [SO:ke]	489973	SOFA	SOFA	sequence	1	SO	small_subunit_rRNA	rRNA_18S
SO:0000252	SO:0000650	SOFA	"RNA that comprises part of a ribosome, and that can provide both structural scaffolding and catalytic activity." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, ISBN:0198506732]	SO:0000407	"A large polynucleotide in eukaryotes, which functions as the small subunit of the ribosome." [SO:ke]	1072424	SOFA	SOFA	sequence	2	SO	rRNA	rRNA_18S
SO:0000655	SO:0000252	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000407	"A large polynucleotide in eukaryotes, which functions as the small subunit of the ribosome." [SO:ke]	1903456	SOFA	SOFA	sequence	3	SO	ncRNA	rRNA_18S
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000407	"A large polynucleotide in eukaryotes, which functions as the small subunit of the ribosome." [SO:ke]	2927929	SOFA	SOFA	sequence	4	SO	mature_transcript	rRNA_18S
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000407	"A large polynucleotide in eukaryotes, which functions as the small subunit of the ribosome." [SO:ke]	4001310	SOFA	SOFA	sequence	5	SO	transcript	rRNA_18S
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000407	"A large polynucleotide in eukaryotes, which functions as the small subunit of the ribosome." [SO:ke]	4965900	SOFA	SOFA	sequence	6	SO	gene_member_region	rRNA_18S
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000407	"A large polynucleotide in eukaryotes, which functions as the small subunit of the ribosome." [SO:ke]	5740869	SOFA	SOFA	sequence	7	SO	biological_region	rRNA_18S
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000407	"A large polynucleotide in eukaryotes, which functions as the small subunit of the ribosome." [SO:ke]	6310837	SOFA	SOFA	sequence	8	SO	region	rRNA_18S
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000407	"A large polynucleotide in eukaryotes, which functions as the small subunit of the ribosome." [SO:ke]	6699231	SOFA	SOFA	sequence	9	SO	sequence_feature	rRNA_18S
SO:0000409	\N	biosapiens,SOFA	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0000409	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	45362	\N	biosapiens,SOFA	sequence	0	SO	binding_site	binding_site
SO:0001411	SO:0000409	biosapiens,SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000409	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	489974	biosapiens,SOFA	SOFA	sequence	1	SO	biological_region	binding_site
SO:0000001	SO:0001411	biosapiens,SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000409	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	1072425	SOFA	SOFA	sequence	2	SO	region	binding_site
SO:0000110	SO:0000001	biosapiens,SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000409	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	1903457	SOFA	SOFA	sequence	3	SO	sequence_feature	binding_site
SO:0000410	\N	SOFA	"A binding site that, in the molecule, interacts selectively and non-covalently with polypeptide molecules." [SO:ke]	SO:0000410	"A binding site that, in the molecule, interacts selectively and non-covalently with polypeptide molecules." [SO:ke]	45363	\N	SOFA	sequence	0	SO	protein_binding_site	protein_binding_site
SO:0000409	SO:0000410	SOFA	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0000410	"A binding site that, in the molecule, interacts selectively and non-covalently with polypeptide molecules." [SO:ke]	489975	SOFA	biosapiens,SOFA	sequence	1	SO	binding_site	protein_binding_site
SO:0001411	SO:0000409	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000410	"A binding site that, in the molecule, interacts selectively and non-covalently with polypeptide molecules." [SO:ke]	1072426	biosapiens,SOFA	SOFA	sequence	2	SO	biological_region	protein_binding_site
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000410	"A binding site that, in the molecule, interacts selectively and non-covalently with polypeptide molecules." [SO:ke]	1903458	SOFA	SOFA	sequence	3	SO	region	protein_binding_site
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000410	"A binding site that, in the molecule, interacts selectively and non-covalently with polypeptide molecules." [SO:ke]	2927930	SOFA	SOFA	sequence	4	SO	sequence_feature	protein_binding_site
SO:0000411	\N	\N	"A region that rescues." [SO:xp]	SO:0000411	"A region that rescues." [SO:xp]	45364	\N	\N	sequence	0	SO	rescue_region	rescue_region
SO:0000695	SO:0000411	\N	"A sequence used in experiment." [SO:ke]	SO:0000411	"A region that rescues." [SO:xp]	489976	\N	SOFA	sequence	1	SO	reagent	rescue_region
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000411	"A region that rescues." [SO:xp]	1072427	SOFA	SOFA	sequence	2	SO	biomaterial_region	rescue_region
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000411	"A region that rescues." [SO:xp]	1903459	SOFA	SOFA	sequence	3	SO	region	rescue_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000411	"A region that rescues." [SO:xp]	2927931	SOFA	SOFA	sequence	4	SO	sequence_feature	rescue_region
SO:0000412	\N	SOFA	"A region of polynucleotide sequence produced by digestion with a restriction endonuclease." [SO:ke]	SO:0000412	"A region of polynucleotide sequence produced by digestion with a restriction endonuclease." [SO:ke]	45365	\N	SOFA	sequence	0	SO	restriction_fragment	restriction_fragment
SO:0000143	SO:0000412	SOFA	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0000412	"A region of polynucleotide sequence produced by digestion with a restriction endonuclease." [SO:ke]	489977	SOFA	SOFA	sequence	1	SO	assembly_component	restriction_fragment
SO:0001410	SO:0000143	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000412	"A region of polynucleotide sequence produced by digestion with a restriction endonuclease." [SO:ke]	1072428	SOFA	SOFA	sequence	2	SO	experimental_feature	restriction_fragment
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000412	"A region of polynucleotide sequence produced by digestion with a restriction endonuclease." [SO:ke]	1903460	SOFA	SOFA	sequence	3	SO	region	restriction_fragment
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000412	"A region of polynucleotide sequence produced by digestion with a restriction endonuclease." [SO:ke]	2927932	SOFA	SOFA	sequence	4	SO	sequence_feature	restriction_fragment
SO:0000413	\N	SOFA	"A region where the sequence differs from that of a specified sequence." [SO:ke]	SO:0000413	"A region where the sequence differs from that of a specified sequence." [SO:ke]	45366	\N	SOFA	sequence	0	SO	sequence_difference	sequence_difference
SO:0000700	SO:0000413	SOFA	"A comment about the sequence." [SO:ke]	SO:0000413	"A region where the sequence differs from that of a specified sequence." [SO:ke]	489978	SOFA	SOFA	sequence	1	SO	remark	sequence_difference
SO:0001410	SO:0000700	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000413	"A region where the sequence differs from that of a specified sequence." [SO:ke]	1072429	SOFA	SOFA	sequence	2	SO	experimental_feature	sequence_difference
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000413	"A region where the sequence differs from that of a specified sequence." [SO:ke]	1903461	SOFA	SOFA	sequence	3	SO	region	sequence_difference
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000413	"A region where the sequence differs from that of a specified sequence." [SO:ke]	2927933	SOFA	SOFA	sequence	4	SO	sequence_feature	sequence_difference
SO:0000414	\N	\N	"An attribute to describe a feature that is invalidated due to genomic contamination." [SO:ke]	SO:0000414	"An attribute to describe a feature that is invalidated due to genomic contamination." [SO:ke]	45367	\N	\N	sequence	0	SO	invalidated_by_genomic_contamination	invalidated_by_genomic_contamination
SO:0000790	SO:0000414	\N	"An attribute describing a feature that is invalidated." [SO:ke]	SO:0000414	"An attribute to describe a feature that is invalidated due to genomic contamination." [SO:ke]	489979	\N	\N	sequence	1	SO	invalidated	invalidated_by_genomic_contamination
SO:0000905	SO:0000790	\N	"An attribute describing the status of a feature, based on the available evidence." [SO:ke]	SO:0000414	"An attribute to describe a feature that is invalidated due to genomic contamination." [SO:ke]	1072430	\N	\N	sequence	2	SO	status	invalidated_by_genomic_contamination
SO:0000733	SO:0000905	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000414	"An attribute to describe a feature that is invalidated due to genomic contamination." [SO:ke]	1903462	\N	\N	sequence	3	SO	feature_attribute	invalidated_by_genomic_contamination
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000414	"An attribute to describe a feature that is invalidated due to genomic contamination." [SO:ke]	2927934	\N	\N	sequence	4	SO	sequence_attribute	invalidated_by_genomic_contamination
SO:0000415	\N	\N	"An attribute to describe a feature that is invalidated due to polyA priming." [SO:ke]	SO:0000415	"An attribute to describe a feature that is invalidated due to polyA priming." [SO:ke]	45368	\N	\N	sequence	0	SO	invalidated_by_genomic_polyA_primed_cDNA	invalidated_by_genomic_polyA_primed_cDNA
SO:0000790	SO:0000415	\N	"An attribute describing a feature that is invalidated." [SO:ke]	SO:0000415	"An attribute to describe a feature that is invalidated due to polyA priming." [SO:ke]	489980	\N	\N	sequence	1	SO	invalidated	invalidated_by_genomic_polyA_primed_cDNA
SO:0000905	SO:0000790	\N	"An attribute describing the status of a feature, based on the available evidence." [SO:ke]	SO:0000415	"An attribute to describe a feature that is invalidated due to polyA priming." [SO:ke]	1072431	\N	\N	sequence	2	SO	status	invalidated_by_genomic_polyA_primed_cDNA
SO:0000733	SO:0000905	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000415	"An attribute to describe a feature that is invalidated due to polyA priming." [SO:ke]	1903463	\N	\N	sequence	3	SO	feature_attribute	invalidated_by_genomic_polyA_primed_cDNA
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000415	"An attribute to describe a feature that is invalidated due to polyA priming." [SO:ke]	2927935	\N	\N	sequence	4	SO	sequence_attribute	invalidated_by_genomic_polyA_primed_cDNA
SO:0000416	\N	\N	"An attribute to describe a feature that is invalidated due to partial processing." [SO:ke]	SO:0000416	"An attribute to describe a feature that is invalidated due to partial processing." [SO:ke]	45369	\N	\N	sequence	0	SO	invalidated_by_partial_processing	invalidated_by_partial_processing
SO:0000790	SO:0000416	\N	"An attribute describing a feature that is invalidated." [SO:ke]	SO:0000416	"An attribute to describe a feature that is invalidated due to partial processing." [SO:ke]	489981	\N	\N	sequence	1	SO	invalidated	invalidated_by_partial_processing
SO:0000905	SO:0000790	\N	"An attribute describing the status of a feature, based on the available evidence." [SO:ke]	SO:0000416	"An attribute to describe a feature that is invalidated due to partial processing." [SO:ke]	1072432	\N	\N	sequence	2	SO	status	invalidated_by_partial_processing
SO:0000733	SO:0000905	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000416	"An attribute to describe a feature that is invalidated due to partial processing." [SO:ke]	1903464	\N	\N	sequence	3	SO	feature_attribute	invalidated_by_partial_processing
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000416	"An attribute to describe a feature that is invalidated due to partial processing." [SO:ke]	2927936	\N	\N	sequence	4	SO	sequence_attribute	invalidated_by_partial_processing
SO:0000417	\N	biosapiens	"A structurally or functionally defined protein region. In proteins with multiple domains, the combination of the domains determines the function of the protein. A region which has been shown to recur throughout evolution." [EBIBS:GAR]	SO:0000417	"A structurally or functionally defined protein region. In proteins with multiple domains, the combination of the domains determines the function of the protein. A region which has been shown to recur throughout evolution." [EBIBS:GAR]	45370	\N	biosapiens	sequence	0	SO	polypeptide_domain	polypeptide_domain
SO:0001070	SO:0000417	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0000417	"A structurally or functionally defined protein region. In proteins with multiple domains, the combination of the domains determines the function of the protein. A region which has been shown to recur throughout evolution." [EBIBS:GAR]	489982	biosapiens	biosapiens	sequence	1	SO	polypeptide_structural_region	polypeptide_domain
SO:0100021	SO:0000417	biosapiens	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0000417	"A structurally or functionally defined protein region. In proteins with multiple domains, the combination of the domains determines the function of the protein. A region which has been shown to recur throughout evolution." [EBIBS:GAR]	489983	biosapiens	biosapiens	sequence	1	SO	polypeptide_conserved_region	polypeptide_domain
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0000417	"A structurally or functionally defined protein region. In proteins with multiple domains, the combination of the domains determines the function of the protein. A region which has been shown to recur throughout evolution." [EBIBS:GAR]	1072433	biosapiens	biosapiens,SOFA	sequence	2	SO	polypeptide_region	polypeptide_domain
SO:0000839	SO:0100021	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0000417	"A structurally or functionally defined protein region. In proteins with multiple domains, the combination of the domains determines the function of the protein. A region which has been shown to recur throughout evolution." [EBIBS:GAR]	1072434	biosapiens	biosapiens,SOFA	sequence	2	SO	polypeptide_region	polypeptide_domain
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0000417	"A structurally or functionally defined protein region. In proteins with multiple domains, the combination of the domains determines the function of the protein. A region which has been shown to recur throughout evolution." [EBIBS:GAR]	1903465	biosapiens,SOFA	SOFA	sequence	3	SO	polypeptide	polypeptide_domain
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000417	"A structurally or functionally defined protein region. In proteins with multiple domains, the combination of the domains determines the function of the protein. A region which has been shown to recur throughout evolution." [EBIBS:GAR]	1903466	biosapiens,SOFA	SOFA	sequence	3	SO	biological_region	polypeptide_domain
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000417	"A structurally or functionally defined protein region. In proteins with multiple domains, the combination of the domains determines the function of the protein. A region which has been shown to recur throughout evolution." [EBIBS:GAR]	2927937	SOFA	SOFA	sequence	4	SO	biological_region	polypeptide_domain
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000417	"A structurally or functionally defined protein region. In proteins with multiple domains, the combination of the domains determines the function of the protein. A region which has been shown to recur throughout evolution." [EBIBS:GAR]	4001311	SOFA	SOFA	sequence	5	SO	region	polypeptide_domain
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000417	"A structurally or functionally defined protein region. In proteins with multiple domains, the combination of the domains determines the function of the protein. A region which has been shown to recur throughout evolution." [EBIBS:GAR]	4385728	SOFA	SOFA	sequence	6	SO	sequence_feature	polypeptide_domain
SO:0000418	\N	biosapiens,SOFA	"The signal_peptide is a short region of the peptide located at the N-terminus that directs the protein to be secreted or part of membrane components." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000418	"The signal_peptide is a short region of the peptide located at the N-terminus that directs the protein to be secreted or part of membrane components." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	45371	\N	biosapiens,SOFA	sequence	0	SO	signal_peptide	signal_peptide
SO:0001062	SO:0000418	biosapiens,SOFA	"Part of a peptide chain which is cleaved off during the formation of the mature protein." [EBIBS:GAR]	SO:0000418	"The signal_peptide is a short region of the peptide located at the N-terminus that directs the protein to be secreted or part of membrane components." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	489984	biosapiens,SOFA	biosapiens	sequence	1	SO	propeptide	signal_peptide
SO:0001527	SO:0000418	biosapiens,SOFA	"A region of peptide sequence used to target the polypeptide molecule to a specific organelle." [SO:ke]	SO:0000418	"The signal_peptide is a short region of the peptide located at the N-terminus that directs the protein to be secreted or part of membrane components." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	489985	biosapiens,SOFA	SOFA	sequence	1	SO	peptide_localization_signal	signal_peptide
SO:0100011	SO:0001062	biosapiens,SOFA	"The cleaved_peptide_region is the region of a peptide sequence that is cleaved during maturation." [EBIBS:GAR]	SO:0000418	"The signal_peptide is a short region of the peptide located at the N-terminus that directs the protein to be secreted or part of membrane components." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072435	biosapiens	biosapiens,SOFA	sequence	2	SO	cleaved_peptide_region	signal_peptide
SO:0000839	SO:0001527	biosapiens,SOFA	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0000418	"The signal_peptide is a short region of the peptide located at the N-terminus that directs the protein to be secreted or part of membrane components." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072436	SOFA	biosapiens,SOFA	sequence	2	SO	polypeptide_region	signal_peptide
SO:0000839	SO:0100011	biosapiens,SOFA	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0000418	"The signal_peptide is a short region of the peptide located at the N-terminus that directs the protein to be secreted or part of membrane components." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903467	biosapiens,SOFA	biosapiens,SOFA	sequence	3	SO	polypeptide_region	signal_peptide
SO:0001063	SO:0100011	biosapiens,SOFA	"An immature_peptide_region is the extent of the peptide after it has been translated and before any processing occurs." [EBIBS:GAR]	SO:0000418	"The signal_peptide is a short region of the peptide located at the N-terminus that directs the protein to be secreted or part of membrane components." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903468	biosapiens,SOFA	biosapiens,SOFA	sequence	3	SO	immature_peptide_region	signal_peptide
SO:0000104	SO:0000839	biosapiens,SOFA	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0000418	"The signal_peptide is a short region of the peptide located at the N-terminus that directs the protein to be secreted or part of membrane components." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4001313	biosapiens,SOFA	SOFA	sequence	5	SO	polypeptide	signal_peptide
SO:0001411	SO:0000839	biosapiens,SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000418	"The signal_peptide is a short region of the peptide located at the N-terminus that directs the protein to be secreted or part of membrane components." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4001314	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	signal_peptide
SO:0000839	SO:0001063	biosapiens,SOFA	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0000418	"The signal_peptide is a short region of the peptide located at the N-terminus that directs the protein to be secreted or part of membrane components." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2927941	biosapiens,SOFA	biosapiens,SOFA	sequence	4	SO	polypeptide_region	signal_peptide
SO:0001411	SO:0000104	biosapiens,SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000418	"The signal_peptide is a short region of the peptide located at the N-terminus that directs the protein to be secreted or part of membrane components." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4132288	SOFA	SOFA	sequence	6	SO	biological_region	signal_peptide
SO:0000001	SO:0001411	biosapiens,SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000418	"The signal_peptide is a short region of the peptide located at the N-terminus that directs the protein to be secreted or part of membrane components." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	5180676	SOFA	SOFA	sequence	7	SO	region	signal_peptide
SO:0000110	SO:0000001	biosapiens,SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000418	"The signal_peptide is a short region of the peptide located at the N-terminus that directs the protein to be secreted or part of membrane components." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	5876434	SOFA	SOFA	sequence	8	SO	sequence_feature	signal_peptide
SO:0000419	\N	biosapiens,SOFA	"The polypeptide sequence that remains when the cleaved peptide regions have been cleaved from the immature peptide." [EBIBS:GAR, http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, SO:cb]	SO:0000419	"The polypeptide sequence that remains when the cleaved peptide regions have been cleaved from the immature peptide." [EBIBS:GAR, http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, SO:cb]	45372	\N	biosapiens,SOFA	sequence	0	SO	mature_protein_region	mature_protein_region
SO:0000839	SO:0000419	biosapiens,SOFA	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0000419	"The polypeptide sequence that remains when the cleaved peptide regions have been cleaved from the immature peptide." [EBIBS:GAR, http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, SO:cb]	489986	biosapiens,SOFA	biosapiens,SOFA	sequence	1	SO	polypeptide_region	mature_protein_region
SO:0001063	SO:0000419	biosapiens,SOFA	"An immature_peptide_region is the extent of the peptide after it has been translated and before any processing occurs." [EBIBS:GAR]	SO:0000419	"The polypeptide sequence that remains when the cleaved peptide regions have been cleaved from the immature peptide." [EBIBS:GAR, http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, SO:cb]	489987	biosapiens,SOFA	biosapiens,SOFA	sequence	1	SO	immature_peptide_region	mature_protein_region
SO:0000104	SO:0000839	biosapiens,SOFA	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0000419	"The polypeptide sequence that remains when the cleaved peptide regions have been cleaved from the immature peptide." [EBIBS:GAR, http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, SO:cb]	1903473	biosapiens,SOFA	SOFA	sequence	3	SO	polypeptide	mature_protein_region
SO:0001411	SO:0000839	biosapiens,SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000419	"The polypeptide sequence that remains when the cleaved peptide regions have been cleaved from the immature peptide." [EBIBS:GAR, http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, SO:cb]	1903474	biosapiens,SOFA	SOFA	sequence	3	SO	biological_region	mature_protein_region
SO:0000839	SO:0001063	biosapiens,SOFA	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0000419	"The polypeptide sequence that remains when the cleaved peptide regions have been cleaved from the immature peptide." [EBIBS:GAR, http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, SO:cb]	1072439	biosapiens,SOFA	biosapiens,SOFA	sequence	2	SO	polypeptide_region	mature_protein_region
SO:0001411	SO:0000104	biosapiens,SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000419	"The polypeptide sequence that remains when the cleaved peptide regions have been cleaved from the immature peptide." [EBIBS:GAR, http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, SO:cb]	2018218	SOFA	SOFA	sequence	4	SO	biological_region	mature_protein_region
SO:0000001	SO:0001411	biosapiens,SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000419	"The polypeptide sequence that remains when the cleaved peptide regions have been cleaved from the immature peptide." [EBIBS:GAR, http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, SO:cb]	3173875	SOFA	SOFA	sequence	5	SO	region	mature_protein_region
SO:0000110	SO:0000001	biosapiens,SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000419	"The polypeptide sequence that remains when the cleaved peptide regions have been cleaved from the immature peptide." [EBIBS:GAR, http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, SO:cb]	4132290	SOFA	SOFA	sequence	6	SO	sequence_feature	mature_protein_region
SO:0000420	\N	\N	"" []	SO:0000420	"" []	45373	\N	\N	sequence	0	SO	five_prime_terminal_inverted_repeat	five_prime_terminal_inverted_repeat
SO:0000481	SO:0000420	\N	"An inverted repeat (SO:0000294) occurring at the termini of a DNA transposon." [SO:ke]	SO:0000420	"" []	489988	\N	\N	sequence	1	SO	terminal_inverted_repeat	five_prime_terminal_inverted_repeat
SO:0000208	SO:0000481	\N	"A DNA transposable element defined as having termini with perfect, or nearly perfect short inverted repeats, generally 10 - 40 nucleotides long." [http://www.genetics.org/cgi/reprint/156/4/1983.pdf]	SO:0000420	"" []	1072440	\N	\N	sequence	2	SO	terminal_inverted_repeat_element	five_prime_terminal_inverted_repeat
SO:0000294	SO:0000481	\N	"The sequence is complementarily repeated on the opposite strand. It is a palindrome, and it may, or may not be hyphenated. Examples: GCTGATCAGC, or GCTGA-----TCAGC." [SO:ke]	SO:0000420	"" []	1072441	\N	SOFA	sequence	2	SO	inverted_repeat	five_prime_terminal_inverted_repeat
SO:0000182	SO:0000208	\N	"A transposon where the mechanism of transposition is via a DNA intermediate." [SO:ke]	SO:0000420	"" []	1903475	\N	\N	sequence	3	SO	DNA_transposon	five_prime_terminal_inverted_repeat
SO:0000657	SO:0000294	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000420	"" []	1903476	SOFA	SOFA	sequence	3	SO	repeat_region	five_prime_terminal_inverted_repeat
SO:0000101	SO:0000182	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000420	"" []	2927945	\N	SOFA	sequence	4	SO	transposable_element	five_prime_terminal_inverted_repeat
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000420	"" []	2927946	SOFA	SOFA	sequence	4	SO	biological_region	five_prime_terminal_inverted_repeat
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000420	"" []	4001316	SOFA	SOFA	sequence	5	SO	integrated_mobile_genetic_element	five_prime_terminal_inverted_repeat
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000420	"" []	6310838	SOFA	SOFA	sequence	8	SO	region	five_prime_terminal_inverted_repeat
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000420	"" []	4965901	SOFA	SOFA	sequence	6	SO	mobile_genetic_element	five_prime_terminal_inverted_repeat
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000420	"" []	6469729	SOFA	SOFA	sequence	9	SO	sequence_feature	five_prime_terminal_inverted_repeat
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000420	"" []	5740870	SOFA	SOFA	sequence	7	SO	biological_region	five_prime_terminal_inverted_repeat
SO:0000421	\N	\N	"" []	SO:0000421	"" []	45374	\N	\N	sequence	0	SO	three_prime_terminal_inverted_repeat	three_prime_terminal_inverted_repeat
SO:0000481	SO:0000421	\N	"An inverted repeat (SO:0000294) occurring at the termini of a DNA transposon." [SO:ke]	SO:0000421	"" []	489989	\N	\N	sequence	1	SO	terminal_inverted_repeat	three_prime_terminal_inverted_repeat
SO:0000208	SO:0000481	\N	"A DNA transposable element defined as having termini with perfect, or nearly perfect short inverted repeats, generally 10 - 40 nucleotides long." [http://www.genetics.org/cgi/reprint/156/4/1983.pdf]	SO:0000421	"" []	1072442	\N	\N	sequence	2	SO	terminal_inverted_repeat_element	three_prime_terminal_inverted_repeat
SO:0000294	SO:0000481	\N	"The sequence is complementarily repeated on the opposite strand. It is a palindrome, and it may, or may not be hyphenated. Examples: GCTGATCAGC, or GCTGA-----TCAGC." [SO:ke]	SO:0000421	"" []	1072443	\N	SOFA	sequence	2	SO	inverted_repeat	three_prime_terminal_inverted_repeat
SO:0000182	SO:0000208	\N	"A transposon where the mechanism of transposition is via a DNA intermediate." [SO:ke]	SO:0000421	"" []	1903477	\N	\N	sequence	3	SO	DNA_transposon	three_prime_terminal_inverted_repeat
SO:0000657	SO:0000294	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000421	"" []	1903478	SOFA	SOFA	sequence	3	SO	repeat_region	three_prime_terminal_inverted_repeat
SO:0000101	SO:0000182	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000421	"" []	2927947	\N	SOFA	sequence	4	SO	transposable_element	three_prime_terminal_inverted_repeat
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000421	"" []	2927948	SOFA	SOFA	sequence	4	SO	biological_region	three_prime_terminal_inverted_repeat
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000421	"" []	4001318	SOFA	SOFA	sequence	5	SO	integrated_mobile_genetic_element	three_prime_terminal_inverted_repeat
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000421	"" []	6310839	SOFA	SOFA	sequence	8	SO	region	three_prime_terminal_inverted_repeat
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000421	"" []	4965903	SOFA	SOFA	sequence	6	SO	mobile_genetic_element	three_prime_terminal_inverted_repeat
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000421	"" []	6469730	SOFA	SOFA	sequence	9	SO	sequence_feature	three_prime_terminal_inverted_repeat
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000421	"" []	5740871	SOFA	SOFA	sequence	7	SO	biological_region	three_prime_terminal_inverted_repeat
SO:0000422	\N	\N	"" []	SO:0000422	"" []	45375	\N	\N	sequence	0	SO	U5_LTR_region	U5_LTR_region
SO:0000848	SO:0000422	\N	"" []	SO:0000422	"" []	489990	\N	\N	sequence	1	SO	LTR_component	U5_LTR_region
SO:0000286	SO:0000848	\N	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000422	"" []	1072444	\N	\N	sequence	2	SO	long_terminal_repeat	U5_LTR_region
SO:0000840	SO:0000848	\N	"A region of a repeated sequence." [SO:ke]	SO:0000422	"" []	1072445	\N	\N	sequence	2	SO	repeat_component	U5_LTR_region
SO:0000186	SO:0000286	\N	"A retrotransposon flanked by long terminal repeat sequences." [SO:ke]	SO:0000422	"" []	1903479	\N	\N	sequence	3	SO	LTR_retrotransposon	U5_LTR_region
SO:0000657	SO:0000286	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000422	"" []	1903480	\N	SOFA	sequence	3	SO	repeat_region	U5_LTR_region
SO:0001412	SO:0000840	\N	"A region that is defined according to its relations with other regions within the same sequence." [SO:cb]	SO:0000422	"" []	1903481	\N	SOFA	sequence	3	SO	topologically_defined_region	U5_LTR_region
SO:0000180	SO:0000186	\N	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	SO:0000422	"" []	2927949	\N	\N	sequence	4	SO	retrotransposon	U5_LTR_region
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000422	"" []	2927950	SOFA	SOFA	sequence	4	SO	biological_region	U5_LTR_region
SO:0000001	SO:0001412	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000422	"" []	2927951	SOFA	SOFA	sequence	4	SO	region	U5_LTR_region
SO:0000101	SO:0000180	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000422	"" []	4001320	\N	SOFA	sequence	5	SO	transposable_element	U5_LTR_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000422	"" []	6699232	SOFA	SOFA	sequence	9	SO	region	U5_LTR_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000422	"" []	6807570	SOFA	SOFA	sequence	10	SO	sequence_feature	U5_LTR_region
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000422	"" []	4965905	SOFA	SOFA	sequence	6	SO	integrated_mobile_genetic_element	U5_LTR_region
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000422	"" []	5740872	SOFA	SOFA	sequence	7	SO	mobile_genetic_element	U5_LTR_region
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000422	"" []	6310840	SOFA	SOFA	sequence	8	SO	biological_region	U5_LTR_region
SO:0000423	\N	\N	"" []	SO:0000423	"" []	45376	\N	\N	sequence	0	SO	R_LTR_region	R_LTR_region
SO:0000848	SO:0000423	\N	"" []	SO:0000423	"" []	489991	\N	\N	sequence	1	SO	LTR_component	R_LTR_region
SO:0000286	SO:0000848	\N	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000423	"" []	1072446	\N	\N	sequence	2	SO	long_terminal_repeat	R_LTR_region
SO:0000840	SO:0000848	\N	"A region of a repeated sequence." [SO:ke]	SO:0000423	"" []	1072447	\N	\N	sequence	2	SO	repeat_component	R_LTR_region
SO:0000186	SO:0000286	\N	"A retrotransposon flanked by long terminal repeat sequences." [SO:ke]	SO:0000423	"" []	1903482	\N	\N	sequence	3	SO	LTR_retrotransposon	R_LTR_region
SO:0000657	SO:0000286	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000423	"" []	1903483	\N	SOFA	sequence	3	SO	repeat_region	R_LTR_region
SO:0001412	SO:0000840	\N	"A region that is defined according to its relations with other regions within the same sequence." [SO:cb]	SO:0000423	"" []	1903484	\N	SOFA	sequence	3	SO	topologically_defined_region	R_LTR_region
SO:0000180	SO:0000186	\N	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	SO:0000423	"" []	2927952	\N	\N	sequence	4	SO	retrotransposon	R_LTR_region
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000423	"" []	2927953	SOFA	SOFA	sequence	4	SO	biological_region	R_LTR_region
SO:0000001	SO:0001412	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000423	"" []	2927954	SOFA	SOFA	sequence	4	SO	region	R_LTR_region
SO:0000101	SO:0000180	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000423	"" []	4001323	\N	SOFA	sequence	5	SO	transposable_element	R_LTR_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000423	"" []	6699233	SOFA	SOFA	sequence	9	SO	region	R_LTR_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000423	"" []	6807571	SOFA	SOFA	sequence	10	SO	sequence_feature	R_LTR_region
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000423	"" []	4965907	SOFA	SOFA	sequence	6	SO	integrated_mobile_genetic_element	R_LTR_region
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000423	"" []	5740873	SOFA	SOFA	sequence	7	SO	mobile_genetic_element	R_LTR_region
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000423	"" []	6310841	SOFA	SOFA	sequence	8	SO	biological_region	R_LTR_region
SO:0000424	\N	\N	"" []	SO:0000424	"" []	45377	\N	\N	sequence	0	SO	U3_LTR_region	U3_LTR_region
SO:0000848	SO:0000424	\N	"" []	SO:0000424	"" []	489992	\N	\N	sequence	1	SO	LTR_component	U3_LTR_region
SO:0000286	SO:0000848	\N	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000424	"" []	1072448	\N	\N	sequence	2	SO	long_terminal_repeat	U3_LTR_region
SO:0000840	SO:0000848	\N	"A region of a repeated sequence." [SO:ke]	SO:0000424	"" []	1072449	\N	\N	sequence	2	SO	repeat_component	U3_LTR_region
SO:0000186	SO:0000286	\N	"A retrotransposon flanked by long terminal repeat sequences." [SO:ke]	SO:0000424	"" []	1903485	\N	\N	sequence	3	SO	LTR_retrotransposon	U3_LTR_region
SO:0000657	SO:0000286	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000424	"" []	1903486	\N	SOFA	sequence	3	SO	repeat_region	U3_LTR_region
SO:0001412	SO:0000840	\N	"A region that is defined according to its relations with other regions within the same sequence." [SO:cb]	SO:0000424	"" []	1903487	\N	SOFA	sequence	3	SO	topologically_defined_region	U3_LTR_region
SO:0000180	SO:0000186	\N	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	SO:0000424	"" []	2927955	\N	\N	sequence	4	SO	retrotransposon	U3_LTR_region
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000424	"" []	2927956	SOFA	SOFA	sequence	4	SO	biological_region	U3_LTR_region
SO:0000001	SO:0001412	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000424	"" []	2927957	SOFA	SOFA	sequence	4	SO	region	U3_LTR_region
SO:0000101	SO:0000180	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000424	"" []	4001326	\N	SOFA	sequence	5	SO	transposable_element	U3_LTR_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000424	"" []	6699234	SOFA	SOFA	sequence	9	SO	region	U3_LTR_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000424	"" []	6807572	SOFA	SOFA	sequence	10	SO	sequence_feature	U3_LTR_region
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000424	"" []	4965909	SOFA	SOFA	sequence	6	SO	integrated_mobile_genetic_element	U3_LTR_region
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000424	"" []	5740874	SOFA	SOFA	sequence	7	SO	mobile_genetic_element	U3_LTR_region
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000424	"" []	6310842	SOFA	SOFA	sequence	8	SO	biological_region	U3_LTR_region
SO:0000425	\N	\N	"" []	SO:0000425	"" []	45378	\N	\N	sequence	0	SO	five_prime_LTR	five_prime_LTR
SO:0000286	SO:0000425	\N	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000425	"" []	489993	\N	\N	sequence	1	SO	long_terminal_repeat	five_prime_LTR
SO:0000186	SO:0000286	\N	"A retrotransposon flanked by long terminal repeat sequences." [SO:ke]	SO:0000425	"" []	1072450	\N	\N	sequence	2	SO	LTR_retrotransposon	five_prime_LTR
SO:0000657	SO:0000286	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000425	"" []	1072451	\N	SOFA	sequence	2	SO	repeat_region	five_prime_LTR
SO:0000180	SO:0000186	\N	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	SO:0000425	"" []	1903488	\N	\N	sequence	3	SO	retrotransposon	five_prime_LTR
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000425	"" []	1903489	SOFA	SOFA	sequence	3	SO	biological_region	five_prime_LTR
SO:0000101	SO:0000180	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000425	"" []	2927958	\N	SOFA	sequence	4	SO	transposable_element	five_prime_LTR
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000425	"" []	6310843	SOFA	SOFA	sequence	8	SO	region	five_prime_LTR
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000425	"" []	4001329	SOFA	SOFA	sequence	5	SO	integrated_mobile_genetic_element	five_prime_LTR
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000425	"" []	6409692	SOFA	SOFA	sequence	9	SO	sequence_feature	five_prime_LTR
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000425	"" []	4965911	SOFA	SOFA	sequence	6	SO	mobile_genetic_element	five_prime_LTR
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000425	"" []	5740875	SOFA	SOFA	sequence	7	SO	biological_region	five_prime_LTR
SO:0000426	\N	\N	"" []	SO:0000426	"" []	45379	\N	\N	sequence	0	SO	three_prime_LTR	three_prime_LTR
SO:0000286	SO:0000426	\N	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000426	"" []	489994	\N	\N	sequence	1	SO	long_terminal_repeat	three_prime_LTR
SO:0000186	SO:0000286	\N	"A retrotransposon flanked by long terminal repeat sequences." [SO:ke]	SO:0000426	"" []	1072452	\N	\N	sequence	2	SO	LTR_retrotransposon	three_prime_LTR
SO:0000657	SO:0000286	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000426	"" []	1072453	\N	SOFA	sequence	2	SO	repeat_region	three_prime_LTR
SO:0000180	SO:0000186	\N	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	SO:0000426	"" []	1903490	\N	\N	sequence	3	SO	retrotransposon	three_prime_LTR
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000426	"" []	1903491	SOFA	SOFA	sequence	3	SO	biological_region	three_prime_LTR
SO:0000101	SO:0000180	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000426	"" []	2927960	\N	SOFA	sequence	4	SO	transposable_element	three_prime_LTR
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000426	"" []	6310844	SOFA	SOFA	sequence	8	SO	region	three_prime_LTR
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000426	"" []	4001331	SOFA	SOFA	sequence	5	SO	integrated_mobile_genetic_element	three_prime_LTR
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000426	"" []	6409693	SOFA	SOFA	sequence	9	SO	sequence_feature	three_prime_LTR
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000426	"" []	4965912	SOFA	SOFA	sequence	6	SO	mobile_genetic_element	three_prime_LTR
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000426	"" []	5740876	SOFA	SOFA	sequence	7	SO	biological_region	three_prime_LTR
SO:0000427	\N	\N	"" []	SO:0000427	"" []	45380	\N	\N	sequence	0	SO	R_five_prime_LTR_region	R_five_prime_LTR_region
SO:0000423	SO:0000427	\N	"" []	SO:0000427	"" []	489995	\N	\N	sequence	1	SO	R_LTR_region	R_five_prime_LTR_region
SO:0000850	SO:0000427	\N	"" []	SO:0000427	"" []	489996	\N	\N	sequence	1	SO	five_prime_LTR_component	R_five_prime_LTR_region
SO:0000848	SO:0000423	\N	"" []	SO:0000427	"" []	1072454	\N	\N	sequence	2	SO	LTR_component	R_five_prime_LTR_region
SO:0000425	SO:0000850	\N	"" []	SO:0000427	"" []	1072455	\N	\N	sequence	2	SO	five_prime_LTR	R_five_prime_LTR_region
SO:0000848	SO:0000850	\N	"" []	SO:0000427	"" []	1072456	\N	\N	sequence	2	SO	LTR_component	R_five_prime_LTR_region
SO:0000286	SO:0000848	\N	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000427	"" []	1903492	\N	\N	sequence	3	SO	long_terminal_repeat	R_five_prime_LTR_region
SO:0000840	SO:0000848	\N	"A region of a repeated sequence." [SO:ke]	SO:0000427	"" []	1903493	\N	\N	sequence	3	SO	repeat_component	R_five_prime_LTR_region
SO:0000286	SO:0000425	\N	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000427	"" []	1903494	\N	\N	sequence	3	SO	long_terminal_repeat	R_five_prime_LTR_region
SO:0000186	SO:0000286	\N	"A retrotransposon flanked by long terminal repeat sequences." [SO:ke]	SO:0000427	"" []	2927962	\N	\N	sequence	4	SO	LTR_retrotransposon	R_five_prime_LTR_region
SO:0000657	SO:0000286	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000427	"" []	2927963	\N	SOFA	sequence	4	SO	repeat_region	R_five_prime_LTR_region
SO:0001412	SO:0000840	\N	"A region that is defined according to its relations with other regions within the same sequence." [SO:cb]	SO:0000427	"" []	2927964	\N	SOFA	sequence	4	SO	topologically_defined_region	R_five_prime_LTR_region
SO:0000180	SO:0000186	\N	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	SO:0000427	"" []	4001333	\N	\N	sequence	5	SO	retrotransposon	R_five_prime_LTR_region
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000427	"" []	4001334	SOFA	SOFA	sequence	5	SO	biological_region	R_five_prime_LTR_region
SO:0000001	SO:0001412	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000427	"" []	4001335	SOFA	SOFA	sequence	5	SO	region	R_five_prime_LTR_region
SO:0000101	SO:0000180	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000427	"" []	4965913	\N	SOFA	sequence	6	SO	transposable_element	R_five_prime_LTR_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000427	"" []	6948056	SOFA	SOFA	sequence	10	SO	region	R_five_prime_LTR_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000427	"" []	7048464	SOFA	SOFA	sequence	11	SO	sequence_feature	R_five_prime_LTR_region
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000427	"" []	5740877	SOFA	SOFA	sequence	7	SO	integrated_mobile_genetic_element	R_five_prime_LTR_region
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000427	"" []	6310845	SOFA	SOFA	sequence	8	SO	mobile_genetic_element	R_five_prime_LTR_region
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000427	"" []	6699235	SOFA	SOFA	sequence	9	SO	biological_region	R_five_prime_LTR_region
SO:0000428	\N	\N	"" []	SO:0000428	"" []	45381	\N	\N	sequence	0	SO	U5_five_prime_LTR_region	U5_five_prime_LTR_region
SO:0000422	SO:0000428	\N	"" []	SO:0000428	"" []	489997	\N	\N	sequence	1	SO	U5_LTR_region	U5_five_prime_LTR_region
SO:0000850	SO:0000428	\N	"" []	SO:0000428	"" []	489998	\N	\N	sequence	1	SO	five_prime_LTR_component	U5_five_prime_LTR_region
SO:0000848	SO:0000422	\N	"" []	SO:0000428	"" []	1072457	\N	\N	sequence	2	SO	LTR_component	U5_five_prime_LTR_region
SO:0000425	SO:0000850	\N	"" []	SO:0000428	"" []	1072458	\N	\N	sequence	2	SO	five_prime_LTR	U5_five_prime_LTR_region
SO:0000848	SO:0000850	\N	"" []	SO:0000428	"" []	1072459	\N	\N	sequence	2	SO	LTR_component	U5_five_prime_LTR_region
SO:0000286	SO:0000848	\N	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000428	"" []	1903495	\N	\N	sequence	3	SO	long_terminal_repeat	U5_five_prime_LTR_region
SO:0000840	SO:0000848	\N	"A region of a repeated sequence." [SO:ke]	SO:0000428	"" []	1903496	\N	\N	sequence	3	SO	repeat_component	U5_five_prime_LTR_region
SO:0000286	SO:0000425	\N	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000428	"" []	1903497	\N	\N	sequence	3	SO	long_terminal_repeat	U5_five_prime_LTR_region
SO:0000186	SO:0000286	\N	"A retrotransposon flanked by long terminal repeat sequences." [SO:ke]	SO:0000428	"" []	2927965	\N	\N	sequence	4	SO	LTR_retrotransposon	U5_five_prime_LTR_region
SO:0000657	SO:0000286	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000428	"" []	2927966	\N	SOFA	sequence	4	SO	repeat_region	U5_five_prime_LTR_region
SO:0001412	SO:0000840	\N	"A region that is defined according to its relations with other regions within the same sequence." [SO:cb]	SO:0000428	"" []	2927967	\N	SOFA	sequence	4	SO	topologically_defined_region	U5_five_prime_LTR_region
SO:0000180	SO:0000186	\N	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	SO:0000428	"" []	4001336	\N	\N	sequence	5	SO	retrotransposon	U5_five_prime_LTR_region
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000428	"" []	4001337	SOFA	SOFA	sequence	5	SO	biological_region	U5_five_prime_LTR_region
SO:0000001	SO:0001412	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000428	"" []	4001338	SOFA	SOFA	sequence	5	SO	region	U5_five_prime_LTR_region
SO:0000101	SO:0000180	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000428	"" []	4965916	\N	SOFA	sequence	6	SO	transposable_element	U5_five_prime_LTR_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000428	"" []	6948057	SOFA	SOFA	sequence	10	SO	region	U5_five_prime_LTR_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000428	"" []	7048465	SOFA	SOFA	sequence	11	SO	sequence_feature	U5_five_prime_LTR_region
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000428	"" []	5740879	SOFA	SOFA	sequence	7	SO	integrated_mobile_genetic_element	U5_five_prime_LTR_region
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000428	"" []	6310846	SOFA	SOFA	sequence	8	SO	mobile_genetic_element	U5_five_prime_LTR_region
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000428	"" []	6699236	SOFA	SOFA	sequence	9	SO	biological_region	U5_five_prime_LTR_region
SO:0000429	\N	\N	"" []	SO:0000429	"" []	45382	\N	\N	sequence	0	SO	U3_five_prime_LTR_region	U3_five_prime_LTR_region
SO:0000424	SO:0000429	\N	"" []	SO:0000429	"" []	489999	\N	\N	sequence	1	SO	U3_LTR_region	U3_five_prime_LTR_region
SO:0000850	SO:0000429	\N	"" []	SO:0000429	"" []	490000	\N	\N	sequence	1	SO	five_prime_LTR_component	U3_five_prime_LTR_region
SO:0000848	SO:0000424	\N	"" []	SO:0000429	"" []	1072460	\N	\N	sequence	2	SO	LTR_component	U3_five_prime_LTR_region
SO:0000425	SO:0000850	\N	"" []	SO:0000429	"" []	1072461	\N	\N	sequence	2	SO	five_prime_LTR	U3_five_prime_LTR_region
SO:0000848	SO:0000850	\N	"" []	SO:0000429	"" []	1072462	\N	\N	sequence	2	SO	LTR_component	U3_five_prime_LTR_region
SO:0000286	SO:0000848	\N	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000429	"" []	1903498	\N	\N	sequence	3	SO	long_terminal_repeat	U3_five_prime_LTR_region
SO:0000840	SO:0000848	\N	"A region of a repeated sequence." [SO:ke]	SO:0000429	"" []	1903499	\N	\N	sequence	3	SO	repeat_component	U3_five_prime_LTR_region
SO:0000286	SO:0000425	\N	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000429	"" []	1903500	\N	\N	sequence	3	SO	long_terminal_repeat	U3_five_prime_LTR_region
SO:0000186	SO:0000286	\N	"A retrotransposon flanked by long terminal repeat sequences." [SO:ke]	SO:0000429	"" []	2927968	\N	\N	sequence	4	SO	LTR_retrotransposon	U3_five_prime_LTR_region
SO:0000657	SO:0000286	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000429	"" []	2927969	\N	SOFA	sequence	4	SO	repeat_region	U3_five_prime_LTR_region
SO:0001412	SO:0000840	\N	"A region that is defined according to its relations with other regions within the same sequence." [SO:cb]	SO:0000429	"" []	2927970	\N	SOFA	sequence	4	SO	topologically_defined_region	U3_five_prime_LTR_region
SO:0000180	SO:0000186	\N	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	SO:0000429	"" []	4001339	\N	\N	sequence	5	SO	retrotransposon	U3_five_prime_LTR_region
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000429	"" []	4001340	SOFA	SOFA	sequence	5	SO	biological_region	U3_five_prime_LTR_region
SO:0000001	SO:0001412	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000429	"" []	4001341	SOFA	SOFA	sequence	5	SO	region	U3_five_prime_LTR_region
SO:0000101	SO:0000180	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000429	"" []	4965919	\N	SOFA	sequence	6	SO	transposable_element	U3_five_prime_LTR_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000429	"" []	6948058	SOFA	SOFA	sequence	10	SO	region	U3_five_prime_LTR_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000429	"" []	7048466	SOFA	SOFA	sequence	11	SO	sequence_feature	U3_five_prime_LTR_region
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000429	"" []	5740881	SOFA	SOFA	sequence	7	SO	integrated_mobile_genetic_element	U3_five_prime_LTR_region
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000429	"" []	6310847	SOFA	SOFA	sequence	8	SO	mobile_genetic_element	U3_five_prime_LTR_region
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000429	"" []	6699237	SOFA	SOFA	sequence	9	SO	biological_region	U3_five_prime_LTR_region
SO:0000430	\N	\N	"" []	SO:0000430	"" []	45383	\N	\N	sequence	0	SO	R_three_prime_LTR_region	R_three_prime_LTR_region
SO:0000849	SO:0000430	\N	"" []	SO:0000430	"" []	490001	\N	\N	sequence	1	SO	three_prime_LTR_component	R_three_prime_LTR_region
SO:0000426	SO:0000849	\N	"" []	SO:0000430	"" []	1072463	\N	\N	sequence	2	SO	three_prime_LTR	R_three_prime_LTR_region
SO:0000848	SO:0000849	\N	"" []	SO:0000430	"" []	1072464	\N	\N	sequence	2	SO	LTR_component	R_three_prime_LTR_region
SO:0000286	SO:0000426	\N	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000430	"" []	1903501	\N	\N	sequence	3	SO	long_terminal_repeat	R_three_prime_LTR_region
SO:0000286	SO:0000848	\N	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000430	"" []	1903502	\N	\N	sequence	3	SO	long_terminal_repeat	R_three_prime_LTR_region
SO:0000840	SO:0000848	\N	"A region of a repeated sequence." [SO:ke]	SO:0000430	"" []	1903503	\N	\N	sequence	3	SO	repeat_component	R_three_prime_LTR_region
SO:0000186	SO:0000286	\N	"A retrotransposon flanked by long terminal repeat sequences." [SO:ke]	SO:0000430	"" []	2927971	\N	\N	sequence	4	SO	LTR_retrotransposon	R_three_prime_LTR_region
SO:0000657	SO:0000286	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000430	"" []	2927972	\N	SOFA	sequence	4	SO	repeat_region	R_three_prime_LTR_region
SO:0001412	SO:0000840	\N	"A region that is defined according to its relations with other regions within the same sequence." [SO:cb]	SO:0000430	"" []	2927973	\N	SOFA	sequence	4	SO	topologically_defined_region	R_three_prime_LTR_region
SO:0000180	SO:0000186	\N	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	SO:0000430	"" []	4001342	\N	\N	sequence	5	SO	retrotransposon	R_three_prime_LTR_region
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000430	"" []	4001343	SOFA	SOFA	sequence	5	SO	biological_region	R_three_prime_LTR_region
SO:0000001	SO:0001412	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000430	"" []	4001344	SOFA	SOFA	sequence	5	SO	region	R_three_prime_LTR_region
SO:0000101	SO:0000180	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000430	"" []	4965922	\N	SOFA	sequence	6	SO	transposable_element	R_three_prime_LTR_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000430	"" []	6948059	SOFA	SOFA	sequence	10	SO	region	R_three_prime_LTR_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000430	"" []	7048467	SOFA	SOFA	sequence	11	SO	sequence_feature	R_three_prime_LTR_region
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000430	"" []	5740883	SOFA	SOFA	sequence	7	SO	integrated_mobile_genetic_element	R_three_prime_LTR_region
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000430	"" []	6310848	SOFA	SOFA	sequence	8	SO	mobile_genetic_element	R_three_prime_LTR_region
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000430	"" []	6699238	SOFA	SOFA	sequence	9	SO	biological_region	R_three_prime_LTR_region
SO:0000431	\N	\N	"" []	SO:0000431	"" []	45384	\N	\N	sequence	0	SO	U3_three_prime_LTR_region	U3_three_prime_LTR_region
SO:0000849	SO:0000431	\N	"" []	SO:0000431	"" []	490002	\N	\N	sequence	1	SO	three_prime_LTR_component	U3_three_prime_LTR_region
SO:0000426	SO:0000849	\N	"" []	SO:0000431	"" []	1072465	\N	\N	sequence	2	SO	three_prime_LTR	U3_three_prime_LTR_region
SO:0000848	SO:0000849	\N	"" []	SO:0000431	"" []	1072466	\N	\N	sequence	2	SO	LTR_component	U3_three_prime_LTR_region
SO:0000286	SO:0000426	\N	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000431	"" []	1903504	\N	\N	sequence	3	SO	long_terminal_repeat	U3_three_prime_LTR_region
SO:0000286	SO:0000848	\N	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000431	"" []	1903505	\N	\N	sequence	3	SO	long_terminal_repeat	U3_three_prime_LTR_region
SO:0000840	SO:0000848	\N	"A region of a repeated sequence." [SO:ke]	SO:0000431	"" []	1903506	\N	\N	sequence	3	SO	repeat_component	U3_three_prime_LTR_region
SO:0000186	SO:0000286	\N	"A retrotransposon flanked by long terminal repeat sequences." [SO:ke]	SO:0000431	"" []	2927974	\N	\N	sequence	4	SO	LTR_retrotransposon	U3_three_prime_LTR_region
SO:0000657	SO:0000286	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000431	"" []	2927975	\N	SOFA	sequence	4	SO	repeat_region	U3_three_prime_LTR_region
SO:0001412	SO:0000840	\N	"A region that is defined according to its relations with other regions within the same sequence." [SO:cb]	SO:0000431	"" []	2927976	\N	SOFA	sequence	4	SO	topologically_defined_region	U3_three_prime_LTR_region
SO:0000180	SO:0000186	\N	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	SO:0000431	"" []	4001345	\N	\N	sequence	5	SO	retrotransposon	U3_three_prime_LTR_region
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000431	"" []	4001346	SOFA	SOFA	sequence	5	SO	biological_region	U3_three_prime_LTR_region
SO:0000001	SO:0001412	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000431	"" []	4001347	SOFA	SOFA	sequence	5	SO	region	U3_three_prime_LTR_region
SO:0000101	SO:0000180	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000431	"" []	4965925	\N	SOFA	sequence	6	SO	transposable_element	U3_three_prime_LTR_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000431	"" []	6948060	SOFA	SOFA	sequence	10	SO	region	U3_three_prime_LTR_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000431	"" []	7048468	SOFA	SOFA	sequence	11	SO	sequence_feature	U3_three_prime_LTR_region
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000431	"" []	5740885	SOFA	SOFA	sequence	7	SO	integrated_mobile_genetic_element	U3_three_prime_LTR_region
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000431	"" []	6310849	SOFA	SOFA	sequence	8	SO	mobile_genetic_element	U3_three_prime_LTR_region
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000431	"" []	6699239	SOFA	SOFA	sequence	9	SO	biological_region	U3_three_prime_LTR_region
SO:0000432	\N	\N	"" []	SO:0000432	"" []	45385	\N	\N	sequence	0	SO	U5_three_prime_LTR_region	U5_three_prime_LTR_region
SO:0000849	SO:0000432	\N	"" []	SO:0000432	"" []	490003	\N	\N	sequence	1	SO	three_prime_LTR_component	U5_three_prime_LTR_region
SO:0000426	SO:0000849	\N	"" []	SO:0000432	"" []	1072467	\N	\N	sequence	2	SO	three_prime_LTR	U5_three_prime_LTR_region
SO:0000848	SO:0000849	\N	"" []	SO:0000432	"" []	1072468	\N	\N	sequence	2	SO	LTR_component	U5_three_prime_LTR_region
SO:0000286	SO:0000426	\N	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000432	"" []	1903507	\N	\N	sequence	3	SO	long_terminal_repeat	U5_three_prime_LTR_region
SO:0000286	SO:0000848	\N	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000432	"" []	1903508	\N	\N	sequence	3	SO	long_terminal_repeat	U5_three_prime_LTR_region
SO:0000840	SO:0000848	\N	"A region of a repeated sequence." [SO:ke]	SO:0000432	"" []	1903509	\N	\N	sequence	3	SO	repeat_component	U5_three_prime_LTR_region
SO:0000186	SO:0000286	\N	"A retrotransposon flanked by long terminal repeat sequences." [SO:ke]	SO:0000432	"" []	2927977	\N	\N	sequence	4	SO	LTR_retrotransposon	U5_three_prime_LTR_region
SO:0000657	SO:0000286	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000432	"" []	2927978	\N	SOFA	sequence	4	SO	repeat_region	U5_three_prime_LTR_region
SO:0001412	SO:0000840	\N	"A region that is defined according to its relations with other regions within the same sequence." [SO:cb]	SO:0000432	"" []	2927979	\N	SOFA	sequence	4	SO	topologically_defined_region	U5_three_prime_LTR_region
SO:0000180	SO:0000186	\N	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	SO:0000432	"" []	4001348	\N	\N	sequence	5	SO	retrotransposon	U5_three_prime_LTR_region
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000432	"" []	4001349	SOFA	SOFA	sequence	5	SO	biological_region	U5_three_prime_LTR_region
SO:0000001	SO:0001412	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000432	"" []	4001350	SOFA	SOFA	sequence	5	SO	region	U5_three_prime_LTR_region
SO:0000101	SO:0000180	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000432	"" []	4965928	\N	SOFA	sequence	6	SO	transposable_element	U5_three_prime_LTR_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000432	"" []	6948061	SOFA	SOFA	sequence	10	SO	region	U5_three_prime_LTR_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000432	"" []	7048469	SOFA	SOFA	sequence	11	SO	sequence_feature	U5_three_prime_LTR_region
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000432	"" []	5740887	SOFA	SOFA	sequence	7	SO	integrated_mobile_genetic_element	U5_three_prime_LTR_region
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000432	"" []	6310850	SOFA	SOFA	sequence	8	SO	mobile_genetic_element	U5_three_prime_LTR_region
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000432	"" []	6699240	SOFA	SOFA	sequence	9	SO	biological_region	U5_three_prime_LTR_region
SO:0000433	\N	\N	"A polymeric tract, such as poly(dA), within a non_LTR_retrotransposon." [SO:ke]	SO:0000433	"A polymeric tract, such as poly(dA), within a non_LTR_retrotransposon." [SO:ke]	45386	\N	\N	sequence	0	SO	non_LTR_retrotransposon_polymeric_tract	non_LTR_retrotransposon_polymeric_tract
SO:0000189	SO:0000433	\N	"A retrotransposon without long terminal repeat sequences." [SO:ke]	SO:0000433	"A polymeric tract, such as poly(dA), within a non_LTR_retrotransposon." [SO:ke]	490004	\N	\N	sequence	1	SO	non_LTR_retrotransposon	non_LTR_retrotransposon_polymeric_tract
SO:0000657	SO:0000433	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000433	"A polymeric tract, such as poly(dA), within a non_LTR_retrotransposon." [SO:ke]	490005	\N	SOFA	sequence	1	SO	repeat_region	non_LTR_retrotransposon_polymeric_tract
SO:0000840	SO:0000433	\N	"A region of a repeated sequence." [SO:ke]	SO:0000433	"A polymeric tract, such as poly(dA), within a non_LTR_retrotransposon." [SO:ke]	490006	\N	\N	sequence	1	SO	repeat_component	non_LTR_retrotransposon_polymeric_tract
SO:0000180	SO:0000189	\N	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	SO:0000433	"A polymeric tract, such as poly(dA), within a non_LTR_retrotransposon." [SO:ke]	1072469	\N	\N	sequence	2	SO	retrotransposon	non_LTR_retrotransposon_polymeric_tract
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000433	"A polymeric tract, such as poly(dA), within a non_LTR_retrotransposon." [SO:ke]	1072470	SOFA	SOFA	sequence	2	SO	biological_region	non_LTR_retrotransposon_polymeric_tract
SO:0001412	SO:0000840	\N	"A region that is defined according to its relations with other regions within the same sequence." [SO:cb]	SO:0000433	"A polymeric tract, such as poly(dA), within a non_LTR_retrotransposon." [SO:ke]	1072471	\N	SOFA	sequence	2	SO	topologically_defined_region	non_LTR_retrotransposon_polymeric_tract
SO:0000101	SO:0000180	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000433	"A polymeric tract, such as poly(dA), within a non_LTR_retrotransposon." [SO:ke]	1903510	\N	SOFA	sequence	3	SO	transposable_element	non_LTR_retrotransposon_polymeric_tract
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000433	"A polymeric tract, such as poly(dA), within a non_LTR_retrotransposon." [SO:ke]	5740889	SOFA	SOFA	sequence	7	SO	region	non_LTR_retrotransposon_polymeric_tract
SO:0000001	SO:0001412	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000433	"A polymeric tract, such as poly(dA), within a non_LTR_retrotransposon." [SO:ke]	1903512	SOFA	SOFA	sequence	3	SO	region	non_LTR_retrotransposon_polymeric_tract
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000433	"A polymeric tract, such as poly(dA), within a non_LTR_retrotransposon." [SO:ke]	2927980	SOFA	SOFA	sequence	4	SO	integrated_mobile_genetic_element	non_LTR_retrotransposon_polymeric_tract
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000433	"A polymeric tract, such as poly(dA), within a non_LTR_retrotransposon." [SO:ke]	5817330	SOFA	SOFA	sequence	8	SO	sequence_feature	non_LTR_retrotransposon_polymeric_tract
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000433	"A polymeric tract, such as poly(dA), within a non_LTR_retrotransposon." [SO:ke]	4001351	SOFA	SOFA	sequence	5	SO	mobile_genetic_element	non_LTR_retrotransposon_polymeric_tract
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000433	"A polymeric tract, such as poly(dA), within a non_LTR_retrotransposon." [SO:ke]	4965931	SOFA	SOFA	sequence	6	SO	biological_region	non_LTR_retrotransposon_polymeric_tract
SO:0000434	\N	\N	"A sequence of the target DNA that is duplicated when a transposable element or phage inserts; usually found at each end the insertion." [http://www.koko.gov.my/CocoaBioTech/Glossaryt.html]	SO:0000434	"A sequence of the target DNA that is duplicated when a transposable element or phage inserts; usually found at each end the insertion." [http://www.koko.gov.my/CocoaBioTech/Glossaryt.html]	45387	\N	\N	sequence	0	SO	target_site_duplication	target_site_duplication
SO:0000314	SO:0000434	\N	"A repeat where the same sequence is repeated in the same direction. Example: GCTGA-followed by-GCTGA." [SO:ke]	SO:0000434	"A sequence of the target DNA that is duplicated when a transposable element or phage inserts; usually found at each end the insertion." [http://www.koko.gov.my/CocoaBioTech/Glossaryt.html]	490007	\N	SOFA	sequence	1	SO	direct_repeat	target_site_duplication
SO:0000657	SO:0000314	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000434	"A sequence of the target DNA that is duplicated when a transposable element or phage inserts; usually found at each end the insertion." [http://www.koko.gov.my/CocoaBioTech/Glossaryt.html]	1072472	SOFA	SOFA	sequence	2	SO	repeat_region	target_site_duplication
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000434	"A sequence of the target DNA that is duplicated when a transposable element or phage inserts; usually found at each end the insertion." [http://www.koko.gov.my/CocoaBioTech/Glossaryt.html]	1903513	SOFA	SOFA	sequence	3	SO	biological_region	target_site_duplication
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000434	"A sequence of the target DNA that is duplicated when a transposable element or phage inserts; usually found at each end the insertion." [http://www.koko.gov.my/CocoaBioTech/Glossaryt.html]	2927982	SOFA	SOFA	sequence	4	SO	region	target_site_duplication
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000434	"A sequence of the target DNA that is duplicated when a transposable element or phage inserts; usually found at each end the insertion." [http://www.koko.gov.my/CocoaBioTech/Glossaryt.html]	4001352	SOFA	SOFA	sequence	5	SO	sequence_feature	target_site_duplication
SO:0000435	\N	\N	"A polypurine tract within an LTR_retrotransposon." [SO:ke]	SO:0000435	"A polypurine tract within an LTR_retrotransposon." [SO:ke]	45388	\N	\N	sequence	0	SO	RR_tract	RR_tract
SO:0000186	SO:0000435	\N	"A retrotransposon flanked by long terminal repeat sequences." [SO:ke]	SO:0000435	"A polypurine tract within an LTR_retrotransposon." [SO:ke]	490008	\N	\N	sequence	1	SO	LTR_retrotransposon	RR_tract
SO:0000330	SO:0000435	\N	"Region of sequence similarity by descent from a common ancestor." [SO:ke]	SO:0000435	"A polypurine tract within an LTR_retrotransposon." [SO:ke]	490009	\N	SOFA	sequence	1	SO	conserved_region	RR_tract
SO:0000180	SO:0000186	\N	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	SO:0000435	"A polypurine tract within an LTR_retrotransposon." [SO:ke]	1072473	\N	\N	sequence	2	SO	retrotransposon	RR_tract
SO:0001410	SO:0000330	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000435	"A polypurine tract within an LTR_retrotransposon." [SO:ke]	1072474	SOFA	SOFA	sequence	2	SO	experimental_feature	RR_tract
SO:0000101	SO:0000180	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000435	"A polypurine tract within an LTR_retrotransposon." [SO:ke]	1903514	\N	SOFA	sequence	3	SO	transposable_element	RR_tract
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000435	"A polypurine tract within an LTR_retrotransposon." [SO:ke]	1903515	SOFA	SOFA	sequence	3	SO	region	RR_tract
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000435	"A polypurine tract within an LTR_retrotransposon." [SO:ke]	2927983	SOFA	SOFA	sequence	4	SO	integrated_mobile_genetic_element	RR_tract
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000435	"A polypurine tract within an LTR_retrotransposon." [SO:ke]	6310851	SOFA	SOFA	sequence	8	SO	sequence_feature	RR_tract
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000435	"A polypurine tract within an LTR_retrotransposon." [SO:ke]	4001353	SOFA	SOFA	sequence	5	SO	mobile_genetic_element	RR_tract
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000435	"A polypurine tract within an LTR_retrotransposon." [SO:ke]	4965932	SOFA	SOFA	sequence	6	SO	biological_region	RR_tract
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000435	"A polypurine tract within an LTR_retrotransposon." [SO:ke]	5740890	SOFA	SOFA	sequence	7	SO	region	RR_tract
SO:0000436	\N	SOFA	"A sequence that can autonomously replicate, as a plasmid, when transformed into a bacterial host." [SO:ma]	SO:0000436	"A sequence that can autonomously replicate, as a plasmid, when transformed into a bacterial host." [SO:ma]	45389	\N	SOFA	sequence	0	SO	ARS	ARS
SO:0000296	SO:0000436	SOFA	"The origin of replication; starting site for duplication of a nucleic acid molecule to give two identical copies." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000436	"A sequence that can autonomously replicate, as a plasmid, when transformed into a bacterial host." [SO:ma]	490010	SOFA	SOFA	sequence	1	SO	origin_of_replication	ARS
SO:0001235	SO:0000296	SOFA	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000436	"A sequence that can autonomously replicate, as a plasmid, when transformed into a bacterial host." [SO:ma]	1072475	SOFA	SOFA	sequence	2	SO	replicon	ARS
SO:0001411	SO:0000296	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000436	"A sequence that can autonomously replicate, as a plasmid, when transformed into a bacterial host." [SO:ma]	1072476	SOFA	SOFA	sequence	2	SO	biological_region	ARS
SO:0001411	SO:0001235	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000436	"A sequence that can autonomously replicate, as a plasmid, when transformed into a bacterial host." [SO:ma]	1903516	SOFA	SOFA	sequence	3	SO	biological_region	ARS
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000436	"A sequence that can autonomously replicate, as a plasmid, when transformed into a bacterial host." [SO:ma]	2927985	SOFA	SOFA	sequence	4	SO	region	ARS
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000436	"A sequence that can autonomously replicate, as a plasmid, when transformed into a bacterial host." [SO:ma]	3173877	SOFA	SOFA	sequence	5	SO	sequence_feature	ARS
SO:0000439	\N	\N	"" []	SO:0000439	"" []	45390	\N	\N	sequence	0	SO	inverted_ring_chromosome	inverted_ring_chromosome
SO:1000030	SO:0000439	\N	"An interchromosomal mutation where a region of the chromosome is inverted with respect to wild type." [SO:ke]	SO:0000439	"" []	490011	\N	\N	sequence	1	SO	chromosomal_inversion	inverted_ring_chromosome
SO:1000045	SO:0000439	\N	"A ring chromosome is a chromosome whose arms have fused together to form a ring, often with the loss of the ends of the chromosome." [http://en.wikipedia.org/wiki/Ring_chromosome]	SO:0000439	"" []	490012	\N	\N	sequence	1	SO	ring_chromosome	inverted_ring_chromosome
SO:1000028	SO:1000030	\N	"A chromosomal structure variation within a single chromosome." [SO:ke]	SO:0000439	"" []	1072477	\N	\N	sequence	2	SO	intrachromosomal_mutation	inverted_ring_chromosome
SO:1000028	SO:1000045	\N	"A chromosomal structure variation within a single chromosome." [SO:ke]	SO:0000439	"" []	1072478	\N	\N	sequence	2	SO	intrachromosomal_mutation	inverted_ring_chromosome
SO:1000183	SO:1000028	\N	"" []	SO:0000439	"" []	1903518	\N	\N	sequence	3	SO	chromosome_structure_variation	inverted_ring_chromosome
SO:0000240	SO:1000183	\N	"" []	SO:0000439	"" []	2927987	\N	\N	sequence	4	SO	chromosome_variation	inverted_ring_chromosome
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0000439	"" []	4001354	\N	\N	sequence	5	SO	variant_collection	inverted_ring_chromosome
SO:0001524	SO:0000240	\N	"" []	SO:0000439	"" []	4001355	\N	\N	sequence	5	SO	chromosomally_aberrant_genome	inverted_ring_chromosome
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000439	"" []	4965933	\N	\N	sequence	6	SO	sequence_collection	inverted_ring_chromosome
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0000439	"" []	4965934	\N	\N	sequence	6	SO	variant_genome	inverted_ring_chromosome
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0000439	"" []	5740891	\N	\N	sequence	7	SO	genome	inverted_ring_chromosome
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000439	"" []	6310852	\N	\N	sequence	8	SO	sequence_collection	inverted_ring_chromosome
SO:0000440	\N	\N	"A replicon that has been modified to act as a vector for foreign sequence." [SO:ma]	SO:0000440	"A replicon that has been modified to act as a vector for foreign sequence." [SO:ma]	45391	\N	\N	sequence	0	SO	vector_replicon	vector_replicon
SO:0000151	SO:0000440	\N	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0000440	"A replicon that has been modified to act as a vector for foreign sequence." [SO:ma]	490013	\N	SOFA	sequence	1	SO	clone	vector_replicon
SO:0001235	SO:0000440	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000440	"A replicon that has been modified to act as a vector for foreign sequence." [SO:ma]	490014	\N	SOFA	sequence	1	SO	replicon	vector_replicon
SO:0000695	SO:0000151	\N	"A sequence used in experiment." [SO:ke]	SO:0000440	"A replicon that has been modified to act as a vector for foreign sequence." [SO:ma]	1072479	SOFA	SOFA	sequence	2	SO	reagent	vector_replicon
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000440	"A replicon that has been modified to act as a vector for foreign sequence." [SO:ma]	1072480	SOFA	SOFA	sequence	2	SO	biological_region	vector_replicon
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000440	"A replicon that has been modified to act as a vector for foreign sequence." [SO:ma]	1903519	SOFA	SOFA	sequence	3	SO	biomaterial_region	vector_replicon
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000440	"A replicon that has been modified to act as a vector for foreign sequence." [SO:ma]	1903520	SOFA	SOFA	sequence	3	SO	region	vector_replicon
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000440	"A replicon that has been modified to act as a vector for foreign sequence." [SO:ma]	2927988	SOFA	SOFA	sequence	4	SO	region	vector_replicon
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000440	"A replicon that has been modified to act as a vector for foreign sequence." [SO:ma]	4001356	SOFA	SOFA	sequence	5	SO	sequence_feature	vector_replicon
SO:0000441	\N	SOFA	"A single stranded oligonucleotide." [SO:ke]	SO:0000441	"A single stranded oligonucleotide." [SO:ke]	45392	\N	SOFA	sequence	0	SO	ss_oligo	ss_oligo
SO:0000696	SO:0000441	SOFA	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0000441	"A single stranded oligonucleotide." [SO:ke]	490015	SOFA	SOFA	sequence	1	SO	oligo	ss_oligo
SO:0000695	SO:0000696	SOFA	"A sequence used in experiment." [SO:ke]	SO:0000441	"A single stranded oligonucleotide." [SO:ke]	1072481	SOFA	SOFA	sequence	2	SO	reagent	ss_oligo
SO:0001409	SO:0000695	SOFA	"A region which is intended for use in an experiment." [SO:cb]	SO:0000441	"A single stranded oligonucleotide." [SO:ke]	1903521	SOFA	SOFA	sequence	3	SO	biomaterial_region	ss_oligo
SO:0000001	SO:0001409	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000441	"A single stranded oligonucleotide." [SO:ke]	2927990	SOFA	SOFA	sequence	4	SO	region	ss_oligo
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000441	"A single stranded oligonucleotide." [SO:ke]	4001357	SOFA	SOFA	sequence	5	SO	sequence_feature	ss_oligo
SO:0000442	\N	SOFA	"A double stranded oligonucleotide." [SO:ke]	SO:0000442	"A double stranded oligonucleotide." [SO:ke]	45393	\N	SOFA	sequence	0	SO	ds_oligo	ds_oligo
SO:0000696	SO:0000442	SOFA	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0000442	"A double stranded oligonucleotide." [SO:ke]	490016	SOFA	SOFA	sequence	1	SO	oligo	ds_oligo
SO:0000695	SO:0000696	SOFA	"A sequence used in experiment." [SO:ke]	SO:0000442	"A double stranded oligonucleotide." [SO:ke]	1072482	SOFA	SOFA	sequence	2	SO	reagent	ds_oligo
SO:0001409	SO:0000695	SOFA	"A region which is intended for use in an experiment." [SO:cb]	SO:0000442	"A double stranded oligonucleotide." [SO:ke]	1903522	SOFA	SOFA	sequence	3	SO	biomaterial_region	ds_oligo
SO:0000001	SO:0001409	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000442	"A double stranded oligonucleotide." [SO:ke]	2927991	SOFA	SOFA	sequence	4	SO	region	ds_oligo
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000442	"A double stranded oligonucleotide." [SO:ke]	4001358	SOFA	SOFA	sequence	5	SO	sequence_feature	ds_oligo
SO:0000443	\N	\N	"An attribute to describe the kind of biological sequence." [SO:ke]	SO:0000443	"An attribute to describe the kind of biological sequence." [SO:ke]	45394	\N	\N	sequence	0	SO	polymer_attribute	polymer_attribute
SO:0000400	SO:0000443	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000443	"An attribute to describe the kind of biological sequence." [SO:ke]	490017	\N	\N	sequence	1	SO	sequence_attribute	polymer_attribute
SO:0000444	\N	\N	"Non-coding exon in the 3' UTR." [SO:ke]	SO:0000444	"Non-coding exon in the 3' UTR." [SO:ke]	45395	\N	\N	sequence	0	SO	three_prime_noncoding_exon	three_prime_noncoding_exon
SO:0000198	SO:0000444	\N	"An exon that does not contain any codons." [SO:ke]	SO:0000444	"Non-coding exon in the 3' UTR." [SO:ke]	490018	\N	SOFA	sequence	1	SO	noncoding_exon	three_prime_noncoding_exon
SO:0000147	SO:0000198	\N	"A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing." [SO:ke]	SO:0000444	"Non-coding exon in the 3' UTR." [SO:ke]	1072483	SOFA	SOFA	sequence	2	SO	exon	three_prime_noncoding_exon
SO:0000833	SO:0000147	\N	"A region of a transcript." [SO:ke]	SO:0000444	"Non-coding exon in the 3' UTR." [SO:ke]	1903523	SOFA	SOFA	sequence	3	SO	transcript_region	three_prime_noncoding_exon
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000444	"Non-coding exon in the 3' UTR." [SO:ke]	2927992	SOFA	SOFA	sequence	4	SO	transcript	three_prime_noncoding_exon
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000444	"Non-coding exon in the 3' UTR." [SO:ke]	2927993	SOFA	SOFA	sequence	4	SO	biological_region	three_prime_noncoding_exon
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000444	"Non-coding exon in the 3' UTR." [SO:ke]	4001359	SOFA	SOFA	sequence	5	SO	gene_member_region	three_prime_noncoding_exon
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000444	"Non-coding exon in the 3' UTR." [SO:ke]	5740892	SOFA	SOFA	sequence	7	SO	region	three_prime_noncoding_exon
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000444	"Non-coding exon in the 3' UTR." [SO:ke]	4965935	SOFA	SOFA	sequence	6	SO	biological_region	three_prime_noncoding_exon
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000444	"Non-coding exon in the 3' UTR." [SO:ke]	5996378	SOFA	SOFA	sequence	8	SO	sequence_feature	three_prime_noncoding_exon
SO:0000445	\N	\N	"Non-coding exon in the 5' UTR." [SO:ke]	SO:0000445	"Non-coding exon in the 5' UTR." [SO:ke]	45396	\N	\N	sequence	0	SO	five_prime_noncoding_exon	five_prime_noncoding_exon
SO:0000198	SO:0000445	\N	"An exon that does not contain any codons." [SO:ke]	SO:0000445	"Non-coding exon in the 5' UTR." [SO:ke]	490019	\N	SOFA	sequence	1	SO	noncoding_exon	five_prime_noncoding_exon
SO:0000147	SO:0000198	\N	"A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing." [SO:ke]	SO:0000445	"Non-coding exon in the 5' UTR." [SO:ke]	1072484	SOFA	SOFA	sequence	2	SO	exon	five_prime_noncoding_exon
SO:0000833	SO:0000147	\N	"A region of a transcript." [SO:ke]	SO:0000445	"Non-coding exon in the 5' UTR." [SO:ke]	1903524	SOFA	SOFA	sequence	3	SO	transcript_region	five_prime_noncoding_exon
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000445	"Non-coding exon in the 5' UTR." [SO:ke]	2927994	SOFA	SOFA	sequence	4	SO	transcript	five_prime_noncoding_exon
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000445	"Non-coding exon in the 5' UTR." [SO:ke]	2927995	SOFA	SOFA	sequence	4	SO	biological_region	five_prime_noncoding_exon
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000445	"Non-coding exon in the 5' UTR." [SO:ke]	4001361	SOFA	SOFA	sequence	5	SO	gene_member_region	five_prime_noncoding_exon
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000445	"Non-coding exon in the 5' UTR." [SO:ke]	5740893	SOFA	SOFA	sequence	7	SO	region	five_prime_noncoding_exon
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000445	"Non-coding exon in the 5' UTR." [SO:ke]	4965937	SOFA	SOFA	sequence	6	SO	biological_region	five_prime_noncoding_exon
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000445	"Non-coding exon in the 5' UTR." [SO:ke]	5996379	SOFA	SOFA	sequence	8	SO	sequence_feature	five_prime_noncoding_exon
SO:0000446	\N	\N	"Intron located in the untranslated region." [SO:ke]	SO:0000446	"Intron located in the untranslated region." [SO:ke]	45397	\N	\N	sequence	0	SO	UTR_intron	UTR_intron
SO:0000188	SO:0000446	\N	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000446	"Intron located in the untranslated region." [SO:ke]	490020	\N	SOFA	sequence	1	SO	intron	UTR_intron
SO:0000835	SO:0000188	\N	"A part of a primary transcript." [SO:ke]	SO:0000446	"Intron located in the untranslated region." [SO:ke]	1072485	SOFA	SOFA	sequence	2	SO	primary_transcript_region	UTR_intron
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000446	"Intron located in the untranslated region." [SO:ke]	1903525	SOFA	SOFA	sequence	3	SO	primary_transcript	UTR_intron
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0000446	"Intron located in the untranslated region." [SO:ke]	1903526	SOFA	SOFA	sequence	3	SO	transcript_region	UTR_intron
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000446	"Intron located in the untranslated region." [SO:ke]	2927996	SOFA	SOFA	sequence	4	SO	transcript	UTR_intron
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000446	"Intron located in the untranslated region." [SO:ke]	2927997	SOFA	SOFA	sequence	4	SO	transcript	UTR_intron
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000446	"Intron located in the untranslated region." [SO:ke]	2927998	SOFA	SOFA	sequence	4	SO	biological_region	UTR_intron
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000446	"Intron located in the untranslated region." [SO:ke]	4001363	SOFA	SOFA	sequence	5	SO	gene_member_region	UTR_intron
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000446	"Intron located in the untranslated region." [SO:ke]	5740894	SOFA	SOFA	sequence	7	SO	region	UTR_intron
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000446	"Intron located in the untranslated region." [SO:ke]	4965939	SOFA	SOFA	sequence	6	SO	biological_region	UTR_intron
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000446	"Intron located in the untranslated region." [SO:ke]	5996380	SOFA	SOFA	sequence	8	SO	sequence_feature	UTR_intron
SO:0000447	\N	\N	"An intron located in the 5' UTR." [SO:ke]	SO:0000447	"An intron located in the 5' UTR." [SO:ke]	45398	\N	\N	sequence	0	SO	five_prime_UTR_intron	five_prime_UTR_intron
SO:0000446	SO:0000447	\N	"Intron located in the untranslated region." [SO:ke]	SO:0000447	"An intron located in the 5' UTR." [SO:ke]	490021	\N	\N	sequence	1	SO	UTR_intron	five_prime_UTR_intron
SO:0000188	SO:0000446	\N	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000447	"An intron located in the 5' UTR." [SO:ke]	1072486	\N	SOFA	sequence	2	SO	intron	five_prime_UTR_intron
SO:0000835	SO:0000188	\N	"A part of a primary transcript." [SO:ke]	SO:0000447	"An intron located in the 5' UTR." [SO:ke]	1903527	SOFA	SOFA	sequence	3	SO	primary_transcript_region	five_prime_UTR_intron
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000447	"An intron located in the 5' UTR." [SO:ke]	2927999	SOFA	SOFA	sequence	4	SO	primary_transcript	five_prime_UTR_intron
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0000447	"An intron located in the 5' UTR." [SO:ke]	2928000	SOFA	SOFA	sequence	4	SO	transcript_region	five_prime_UTR_intron
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000447	"An intron located in the 5' UTR." [SO:ke]	4001365	SOFA	SOFA	sequence	5	SO	transcript	five_prime_UTR_intron
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000447	"An intron located in the 5' UTR." [SO:ke]	4001366	SOFA	SOFA	sequence	5	SO	transcript	five_prime_UTR_intron
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000447	"An intron located in the 5' UTR." [SO:ke]	4001367	SOFA	SOFA	sequence	5	SO	biological_region	five_prime_UTR_intron
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000447	"An intron located in the 5' UTR." [SO:ke]	4965941	SOFA	SOFA	sequence	6	SO	gene_member_region	five_prime_UTR_intron
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000447	"An intron located in the 5' UTR." [SO:ke]	6310853	SOFA	SOFA	sequence	8	SO	region	five_prime_UTR_intron
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000447	"An intron located in the 5' UTR." [SO:ke]	5740895	SOFA	SOFA	sequence	7	SO	biological_region	five_prime_UTR_intron
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000447	"An intron located in the 5' UTR." [SO:ke]	6550250	SOFA	SOFA	sequence	9	SO	sequence_feature	five_prime_UTR_intron
SO:0000448	\N	\N	"An intron located in the 3' UTR." [SO:ke]	SO:0000448	"An intron located in the 3' UTR." [SO:ke]	45399	\N	\N	sequence	0	SO	three_prime_UTR_intron	three_prime_UTR_intron
SO:0000446	SO:0000448	\N	"Intron located in the untranslated region." [SO:ke]	SO:0000448	"An intron located in the 3' UTR." [SO:ke]	490022	\N	\N	sequence	1	SO	UTR_intron	three_prime_UTR_intron
SO:0000188	SO:0000446	\N	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000448	"An intron located in the 3' UTR." [SO:ke]	1072487	\N	SOFA	sequence	2	SO	intron	three_prime_UTR_intron
SO:0000835	SO:0000188	\N	"A part of a primary transcript." [SO:ke]	SO:0000448	"An intron located in the 3' UTR." [SO:ke]	1903528	SOFA	SOFA	sequence	3	SO	primary_transcript_region	three_prime_UTR_intron
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000448	"An intron located in the 3' UTR." [SO:ke]	2928001	SOFA	SOFA	sequence	4	SO	primary_transcript	three_prime_UTR_intron
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0000448	"An intron located in the 3' UTR." [SO:ke]	2928002	SOFA	SOFA	sequence	4	SO	transcript_region	three_prime_UTR_intron
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000448	"An intron located in the 3' UTR." [SO:ke]	4001368	SOFA	SOFA	sequence	5	SO	transcript	three_prime_UTR_intron
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000448	"An intron located in the 3' UTR." [SO:ke]	4001369	SOFA	SOFA	sequence	5	SO	transcript	three_prime_UTR_intron
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000448	"An intron located in the 3' UTR." [SO:ke]	4001370	SOFA	SOFA	sequence	5	SO	biological_region	three_prime_UTR_intron
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000448	"An intron located in the 3' UTR." [SO:ke]	4965943	SOFA	SOFA	sequence	6	SO	gene_member_region	three_prime_UTR_intron
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000448	"An intron located in the 3' UTR." [SO:ke]	6310854	SOFA	SOFA	sequence	8	SO	region	three_prime_UTR_intron
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000448	"An intron located in the 3' UTR." [SO:ke]	5740897	SOFA	SOFA	sequence	7	SO	biological_region	three_prime_UTR_intron
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000448	"An intron located in the 3' UTR." [SO:ke]	6550251	SOFA	SOFA	sequence	9	SO	sequence_feature	three_prime_UTR_intron
SO:0000449	\N	\N	"A sequence of nucleotides or amino acids which, by design, has a \\"random\\" order of components, given a predetermined input frequency of these components." [SO:ma]	SO:0000449	"A sequence of nucleotides or amino acids which, by design, has a \\"random\\" order of components, given a predetermined input frequency of these components." [SO:ma]	45400	\N	\N	sequence	0	SO	random_sequence	random_sequence
SO:0000351	SO:0000449	\N	"An attribute to decide a sequence of nucleotides, nucleotide analogs, or amino acids that has been designed by an experimenter and which may, or may not, correspond with any natural sequence." [SO:ma]	SO:0000449	"A sequence of nucleotides or amino acids which, by design, has a \\"random\\" order of components, given a predetermined input frequency of these components." [SO:ma]	490023	\N	\N	sequence	1	SO	synthetic_sequence	random_sequence
SO:0000443	SO:0000351	\N	"An attribute to describe the kind of biological sequence." [SO:ke]	SO:0000449	"A sequence of nucleotides or amino acids which, by design, has a \\"random\\" order of components, given a predetermined input frequency of these components." [SO:ma]	1072488	\N	\N	sequence	2	SO	polymer_attribute	random_sequence
SO:0000400	SO:0000443	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000449	"A sequence of nucleotides or amino acids which, by design, has a \\"random\\" order of components, given a predetermined input frequency of these components." [SO:ma]	1903529	\N	\N	sequence	3	SO	sequence_attribute	random_sequence
SO:0000450	\N	\N	"A light region between two darkly staining bands in a polytene chromosome." [SO:ma]	SO:0000450	"A light region between two darkly staining bands in a polytene chromosome." [SO:ma]	45401	\N	\N	sequence	0	SO	interband	interband
SO:0000830	SO:0000450	\N	"A region of a chromosome." [SO:ke]	SO:0000450	"A light region between two darkly staining bands in a polytene chromosome." [SO:ma]	490024	\N	SOFA	sequence	1	SO	chromosome_part	interband
SO:0000340	SO:0000830	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000450	"A light region between two darkly staining bands in a polytene chromosome." [SO:ma]	1072489	SOFA	SOFA	sequence	2	SO	chromosome	interband
SO:0001411	SO:0000830	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000450	"A light region between two darkly staining bands in a polytene chromosome." [SO:ma]	1072490	SOFA	SOFA	sequence	2	SO	biological_region	interband
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000450	"A light region between two darkly staining bands in a polytene chromosome." [SO:ma]	1903530	SOFA	SOFA	sequence	3	SO	replicon	interband
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000450	"A light region between two darkly staining bands in a polytene chromosome." [SO:ma]	4001371	SOFA	SOFA	sequence	5	SO	region	interband
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000450	"A light region between two darkly staining bands in a polytene chromosome." [SO:ma]	2928003	SOFA	SOFA	sequence	4	SO	biological_region	interband
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000450	"A light region between two darkly staining bands in a polytene chromosome." [SO:ma]	4132291	SOFA	SOFA	sequence	6	SO	sequence_feature	interband
SO:0000451	\N	\N	"A gene that encodes a polyadenylated mRNA." [SO:xp]	SO:0000451	"A gene that encodes a polyadenylated mRNA." [SO:xp]	45402	\N	\N	sequence	0	SO	gene_with_polyadenylated_mRNA	gene_with_polyadenylated_mRNA
SO:0001217	SO:0000451	\N	"" []	SO:0000451	"A gene that encodes a polyadenylated mRNA." [SO:xp]	490025	\N	\N	sequence	1	SO	protein_coding_gene	gene_with_polyadenylated_mRNA
SO:0000704	SO:0001217	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000451	"A gene that encodes a polyadenylated mRNA." [SO:xp]	1072491	\N	SOFA	sequence	2	SO	gene	gene_with_polyadenylated_mRNA
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000451	"A gene that encodes a polyadenylated mRNA." [SO:xp]	1903532	SOFA	SOFA	sequence	3	SO	biological_region	gene_with_polyadenylated_mRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000451	"A gene that encodes a polyadenylated mRNA." [SO:xp]	2928005	SOFA	SOFA	sequence	4	SO	region	gene_with_polyadenylated_mRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000451	"A gene that encodes a polyadenylated mRNA." [SO:xp]	4001372	SOFA	SOFA	sequence	5	SO	sequence_feature	gene_with_polyadenylated_mRNA
SO:0000453	\N	\N	"A chromosome structure variant whereby a region of a chromosome has been transferred to another position. Among interchromosomal rearrangements, the term transposition is reserved for that class in which the telomeres of the chromosomes involved are coupled (that is to say, form the two ends of a single DNA molecule) as in wild-type." [FB:reference_manual, SO:ke]	SO:0000453	"A chromosome structure variant whereby a region of a chromosome has been transferred to another position. Among interchromosomal rearrangements, the term transposition is reserved for that class in which the telomeres of the chromosomes involved are coupled (that is to say, form the two ends of a single DNA molecule) as in wild-type." [FB:reference_manual, SO:ke]	45403	\N	\N	sequence	0	SO	chromosomal_transposition	chromosomal_transposition
SO:1000183	SO:0000453	\N	"" []	SO:0000453	"A chromosome structure variant whereby a region of a chromosome has been transferred to another position. Among interchromosomal rearrangements, the term transposition is reserved for that class in which the telomeres of the chromosomes involved are coupled (that is to say, form the two ends of a single DNA molecule) as in wild-type." [FB:reference_manual, SO:ke]	490026	\N	\N	sequence	1	SO	chromosome_structure_variation	chromosomal_transposition
SO:0000240	SO:1000183	\N	"" []	SO:0000453	"A chromosome structure variant whereby a region of a chromosome has been transferred to another position. Among interchromosomal rearrangements, the term transposition is reserved for that class in which the telomeres of the chromosomes involved are coupled (that is to say, form the two ends of a single DNA molecule) as in wild-type." [FB:reference_manual, SO:ke]	1072492	\N	\N	sequence	2	SO	chromosome_variation	chromosomal_transposition
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0000453	"A chromosome structure variant whereby a region of a chromosome has been transferred to another position. Among interchromosomal rearrangements, the term transposition is reserved for that class in which the telomeres of the chromosomes involved are coupled (that is to say, form the two ends of a single DNA molecule) as in wild-type." [FB:reference_manual, SO:ke]	1903533	\N	\N	sequence	3	SO	variant_collection	chromosomal_transposition
SO:0001524	SO:0000240	\N	"" []	SO:0000453	"A chromosome structure variant whereby a region of a chromosome has been transferred to another position. Among interchromosomal rearrangements, the term transposition is reserved for that class in which the telomeres of the chromosomes involved are coupled (that is to say, form the two ends of a single DNA molecule) as in wild-type." [FB:reference_manual, SO:ke]	1903534	\N	\N	sequence	3	SO	chromosomally_aberrant_genome	chromosomal_transposition
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000453	"A chromosome structure variant whereby a region of a chromosome has been transferred to another position. Among interchromosomal rearrangements, the term transposition is reserved for that class in which the telomeres of the chromosomes involved are coupled (that is to say, form the two ends of a single DNA molecule) as in wild-type." [FB:reference_manual, SO:ke]	2928006	\N	\N	sequence	4	SO	sequence_collection	chromosomal_transposition
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0000453	"A chromosome structure variant whereby a region of a chromosome has been transferred to another position. Among interchromosomal rearrangements, the term transposition is reserved for that class in which the telomeres of the chromosomes involved are coupled (that is to say, form the two ends of a single DNA molecule) as in wild-type." [FB:reference_manual, SO:ke]	2928007	\N	\N	sequence	4	SO	variant_genome	chromosomal_transposition
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0000453	"A chromosome structure variant whereby a region of a chromosome has been transferred to another position. Among interchromosomal rearrangements, the term transposition is reserved for that class in which the telomeres of the chromosomes involved are coupled (that is to say, form the two ends of a single DNA molecule) as in wild-type." [FB:reference_manual, SO:ke]	4001373	\N	\N	sequence	5	SO	genome	chromosomal_transposition
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000453	"A chromosome structure variant whereby a region of a chromosome has been transferred to another position. Among interchromosomal rearrangements, the term transposition is reserved for that class in which the telomeres of the chromosomes involved are coupled (that is to say, form the two ends of a single DNA molecule) as in wild-type." [FB:reference_manual, SO:ke]	4965945	\N	\N	sequence	6	SO	sequence_collection	chromosomal_transposition
SO:0000454	\N	SOFA	"A 17-28-nt, small interfering RNA derived from transcripts of repetitive elements." [http://www.developmentalcell.com/content/article/abstract?uid=PIIS1534580703002284]	SO:0000454	"A 17-28-nt, small interfering RNA derived from transcripts of repetitive elements." [http://www.developmentalcell.com/content/article/abstract?uid=PIIS1534580703002284]	45404	\N	SOFA	sequence	0	SO	rasiRNA	rasiRNA
SO:0000655	SO:0000454	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000454	"A 17-28-nt, small interfering RNA derived from transcripts of repetitive elements." [http://www.developmentalcell.com/content/article/abstract?uid=PIIS1534580703002284]	490027	SOFA	SOFA	sequence	1	SO	ncRNA	rasiRNA
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000454	"A 17-28-nt, small interfering RNA derived from transcripts of repetitive elements." [http://www.developmentalcell.com/content/article/abstract?uid=PIIS1534580703002284]	1072493	SOFA	SOFA	sequence	2	SO	mature_transcript	rasiRNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000454	"A 17-28-nt, small interfering RNA derived from transcripts of repetitive elements." [http://www.developmentalcell.com/content/article/abstract?uid=PIIS1534580703002284]	1903535	SOFA	SOFA	sequence	3	SO	transcript	rasiRNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000454	"A 17-28-nt, small interfering RNA derived from transcripts of repetitive elements." [http://www.developmentalcell.com/content/article/abstract?uid=PIIS1534580703002284]	2928008	SOFA	SOFA	sequence	4	SO	gene_member_region	rasiRNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000454	"A 17-28-nt, small interfering RNA derived from transcripts of repetitive elements." [http://www.developmentalcell.com/content/article/abstract?uid=PIIS1534580703002284]	4001374	SOFA	SOFA	sequence	5	SO	biological_region	rasiRNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000454	"A 17-28-nt, small interfering RNA derived from transcripts of repetitive elements." [http://www.developmentalcell.com/content/article/abstract?uid=PIIS1534580703002284]	4965946	SOFA	SOFA	sequence	6	SO	region	rasiRNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000454	"A 17-28-nt, small interfering RNA derived from transcripts of repetitive elements." [http://www.developmentalcell.com/content/article/abstract?uid=PIIS1534580703002284]	5740899	SOFA	SOFA	sequence	7	SO	sequence_feature	rasiRNA
SO:0000455	\N	\N	"A gene that encodes an mRNA with a frameshift." [SO:xp]	SO:0000455	"A gene that encodes an mRNA with a frameshift." [SO:xp]	45405	\N	\N	sequence	0	SO	gene_with_mRNA_with_frameshift	gene_with_mRNA_with_frameshift
SO:0001217	SO:0000455	\N	"" []	SO:0000455	"A gene that encodes an mRNA with a frameshift." [SO:xp]	490028	\N	\N	sequence	1	SO	protein_coding_gene	gene_with_mRNA_with_frameshift
SO:0000704	SO:0001217	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000455	"A gene that encodes an mRNA with a frameshift." [SO:xp]	1072494	\N	SOFA	sequence	2	SO	gene	gene_with_mRNA_with_frameshift
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000455	"A gene that encodes an mRNA with a frameshift." [SO:xp]	1903536	SOFA	SOFA	sequence	3	SO	biological_region	gene_with_mRNA_with_frameshift
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000455	"A gene that encodes an mRNA with a frameshift." [SO:xp]	2928009	SOFA	SOFA	sequence	4	SO	region	gene_with_mRNA_with_frameshift
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000455	"A gene that encodes an mRNA with a frameshift." [SO:xp]	4001375	SOFA	SOFA	sequence	5	SO	sequence_feature	gene_with_mRNA_with_frameshift
SO:0000456	\N	\N	"A gene that is recombinationally rearranged." [SO:ke]	SO:0000456	"A gene that is recombinationally rearranged." [SO:ke]	45406	\N	\N	sequence	0	SO	recombinationally_rearranged_gene	recombinationally_rearranged_gene
SO:0000704	SO:0000456	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000456	"A gene that is recombinationally rearranged." [SO:ke]	490029	\N	SOFA	sequence	1	SO	gene	recombinationally_rearranged_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000456	"A gene that is recombinationally rearranged." [SO:ke]	1072495	SOFA	SOFA	sequence	2	SO	biological_region	recombinationally_rearranged_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000456	"A gene that is recombinationally rearranged." [SO:ke]	1903537	SOFA	SOFA	sequence	3	SO	region	recombinationally_rearranged_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000456	"A gene that is recombinationally rearranged." [SO:ke]	2928010	SOFA	SOFA	sequence	4	SO	sequence_feature	recombinationally_rearranged_gene
SO:0000457	\N	\N	"A chromosome duplication involving an insertion from another chromosome." [SO:ke]	SO:0000457	"A chromosome duplication involving an insertion from another chromosome." [SO:ke]	45407	\N	\N	sequence	0	SO	interchromosomal_duplication	interchromosomal_duplication
SO:1000037	SO:0000457	\N	"An extra chromosome." [SO:ke]	SO:0000457	"A chromosome duplication involving an insertion from another chromosome." [SO:ke]	490030	\N	\N	sequence	1	SO	chromosomal_duplication	interchromosomal_duplication
SO:1000183	SO:1000037	\N	"" []	SO:0000457	"A chromosome duplication involving an insertion from another chromosome." [SO:ke]	1072496	\N	\N	sequence	2	SO	chromosome_structure_variation	interchromosomal_duplication
SO:0000240	SO:1000183	\N	"" []	SO:0000457	"A chromosome duplication involving an insertion from another chromosome." [SO:ke]	1903538	\N	\N	sequence	3	SO	chromosome_variation	interchromosomal_duplication
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0000457	"A chromosome duplication involving an insertion from another chromosome." [SO:ke]	2928011	\N	\N	sequence	4	SO	variant_collection	interchromosomal_duplication
SO:0001524	SO:0000240	\N	"" []	SO:0000457	"A chromosome duplication involving an insertion from another chromosome." [SO:ke]	2928012	\N	\N	sequence	4	SO	chromosomally_aberrant_genome	interchromosomal_duplication
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000457	"A chromosome duplication involving an insertion from another chromosome." [SO:ke]	4001376	\N	\N	sequence	5	SO	sequence_collection	interchromosomal_duplication
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0000457	"A chromosome duplication involving an insertion from another chromosome." [SO:ke]	4001377	\N	\N	sequence	5	SO	variant_genome	interchromosomal_duplication
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0000457	"A chromosome duplication involving an insertion from another chromosome." [SO:ke]	4965947	\N	\N	sequence	6	SO	genome	interchromosomal_duplication
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000457	"A chromosome duplication involving an insertion from another chromosome." [SO:ke]	5740900	\N	\N	sequence	7	SO	sequence_collection	interchromosomal_duplication
SO:0000458	\N	\N	"Germline genomic DNA including D-region with 5' UTR and 3' UTR, also designated as D-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000458	"Germline genomic DNA including D-region with 5' UTR and 3' UTR, also designated as D-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45408	\N	\N	sequence	0	SO	D_gene_segment	D_gene_segment
SO:0000460	SO:0000458	\N	"" []	SO:0000458	"Germline genomic DNA including D-region with 5' UTR and 3' UTR, also designated as D-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490031	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_segment	D_gene_segment
SO:0000301	SO:0000460	\N	"" []	SO:0000458	"Germline genomic DNA including D-region with 5' UTR and 3' UTR, also designated as D-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072497	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	D_gene_segment
SO:0000300	SO:0000301	\N	"" []	SO:0000458	"Germline genomic DNA including D-region with 5' UTR and 3' UTR, also designated as D-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903539	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	D_gene_segment
SO:0000299	SO:0000300	\N	"" []	SO:0000458	"Germline genomic DNA including D-region with 5' UTR and 3' UTR, also designated as D-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928013	\N	\N	sequence	4	SO	specific_recombination_site	D_gene_segment
SO:0000669	SO:0000299	\N	"" []	SO:0000458	"Germline genomic DNA including D-region with 5' UTR and 3' UTR, also designated as D-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001378	\N	\N	sequence	5	SO	sequence_rearrangement_feature	D_gene_segment
SO:0000298	SO:0000669	\N	"" []	SO:0000458	"Germline genomic DNA including D-region with 5' UTR and 3' UTR, also designated as D-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4965948	\N	\N	sequence	6	SO	recombination_feature	D_gene_segment
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000458	"Germline genomic DNA including D-region with 5' UTR and 3' UTR, also designated as D-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740901	\N	SOFA	sequence	7	SO	biological_region	D_gene_segment
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000458	"Germline genomic DNA including D-region with 5' UTR and 3' UTR, also designated as D-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310855	SOFA	SOFA	sequence	8	SO	region	D_gene_segment
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000458	"Germline genomic DNA including D-region with 5' UTR and 3' UTR, also designated as D-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699241	SOFA	SOFA	sequence	9	SO	sequence_feature	D_gene_segment
SO:0000459	\N	\N	"A gene with a transcript that is trans-spliced." [SO:xp]	SO:0000459	"A gene with a transcript that is trans-spliced." [SO:xp]	45409	\N	\N	sequence	0	SO	gene_with_trans_spliced_transcript	gene_with_trans_spliced_transcript
SO:0000704	SO:0000459	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000459	"A gene with a transcript that is trans-spliced." [SO:xp]	490032	\N	SOFA	sequence	1	SO	gene	gene_with_trans_spliced_transcript
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000459	"A gene with a transcript that is trans-spliced." [SO:xp]	1072498	SOFA	SOFA	sequence	2	SO	biological_region	gene_with_trans_spliced_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000459	"A gene with a transcript that is trans-spliced." [SO:xp]	1903540	SOFA	SOFA	sequence	3	SO	region	gene_with_trans_spliced_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000459	"A gene with a transcript that is trans-spliced." [SO:xp]	2928014	SOFA	SOFA	sequence	4	SO	sequence_feature	gene_with_trans_spliced_transcript
SO:0000460	\N	\N	"" []	SO:0000460	"" []	45410	\N	\N	sequence	0	SO	vertebrate_immunoglobulin_T_cell_receptor_segment	vertebrate_immunoglobulin_T_cell_receptor_segment
SO:0000301	SO:0000460	\N	"" []	SO:0000460	"" []	490033	\N	\N	sequence	1	SO	vertebrate_immune_system_gene_recombination_feature	vertebrate_immunoglobulin_T_cell_receptor_segment
SO:0000300	SO:0000301	\N	"" []	SO:0000460	"" []	1072499	\N	\N	sequence	2	SO	recombination_feature_of_rearranged_gene	vertebrate_immunoglobulin_T_cell_receptor_segment
SO:0000299	SO:0000300	\N	"" []	SO:0000460	"" []	1903541	\N	\N	sequence	3	SO	specific_recombination_site	vertebrate_immunoglobulin_T_cell_receptor_segment
SO:0000669	SO:0000299	\N	"" []	SO:0000460	"" []	2928015	\N	\N	sequence	4	SO	sequence_rearrangement_feature	vertebrate_immunoglobulin_T_cell_receptor_segment
SO:0000298	SO:0000669	\N	"" []	SO:0000460	"" []	4001379	\N	\N	sequence	5	SO	recombination_feature	vertebrate_immunoglobulin_T_cell_receptor_segment
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000460	"" []	4965949	\N	SOFA	sequence	6	SO	biological_region	vertebrate_immunoglobulin_T_cell_receptor_segment
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000460	"" []	5740902	SOFA	SOFA	sequence	7	SO	region	vertebrate_immunoglobulin_T_cell_receptor_segment
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000460	"" []	6310856	SOFA	SOFA	sequence	8	SO	sequence_feature	vertebrate_immunoglobulin_T_cell_receptor_segment
SO:0000461	\N	\N	"A chromosomal deletion whereby a chromosome generated by recombination between two inversions; has a deficiency at each end of the inversion." [FB:km]	SO:0000461	"A chromosomal deletion whereby a chromosome generated by recombination between two inversions; has a deficiency at each end of the inversion." [FB:km]	45411	\N	\N	sequence	0	SO	inversion_derived_bipartite_deficiency	inversion_derived_bipartite_deficiency
SO:1000029	SO:0000461	\N	"An incomplete chromosome." [SO:ke]	SO:0000461	"A chromosomal deletion whereby a chromosome generated by recombination between two inversions; has a deficiency at each end of the inversion." [FB:km]	490034	\N	\N	sequence	1	SO	chromosomal_deletion	inversion_derived_bipartite_deficiency
SO:1000028	SO:1000029	\N	"A chromosomal structure variation within a single chromosome." [SO:ke]	SO:0000461	"A chromosomal deletion whereby a chromosome generated by recombination between two inversions; has a deficiency at each end of the inversion." [FB:km]	1072500	\N	\N	sequence	2	SO	intrachromosomal_mutation	inversion_derived_bipartite_deficiency
SO:1000183	SO:1000028	\N	"" []	SO:0000461	"A chromosomal deletion whereby a chromosome generated by recombination between two inversions; has a deficiency at each end of the inversion." [FB:km]	1903542	\N	\N	sequence	3	SO	chromosome_structure_variation	inversion_derived_bipartite_deficiency
SO:0000240	SO:1000183	\N	"" []	SO:0000461	"A chromosomal deletion whereby a chromosome generated by recombination between two inversions; has a deficiency at each end of the inversion." [FB:km]	2928016	\N	\N	sequence	4	SO	chromosome_variation	inversion_derived_bipartite_deficiency
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0000461	"A chromosomal deletion whereby a chromosome generated by recombination between two inversions; has a deficiency at each end of the inversion." [FB:km]	4001380	\N	\N	sequence	5	SO	variant_collection	inversion_derived_bipartite_deficiency
SO:0001524	SO:0000240	\N	"" []	SO:0000461	"A chromosomal deletion whereby a chromosome generated by recombination between two inversions; has a deficiency at each end of the inversion." [FB:km]	4001381	\N	\N	sequence	5	SO	chromosomally_aberrant_genome	inversion_derived_bipartite_deficiency
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000461	"A chromosomal deletion whereby a chromosome generated by recombination between two inversions; has a deficiency at each end of the inversion." [FB:km]	4965950	\N	\N	sequence	6	SO	sequence_collection	inversion_derived_bipartite_deficiency
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0000461	"A chromosomal deletion whereby a chromosome generated by recombination between two inversions; has a deficiency at each end of the inversion." [FB:km]	4965951	\N	\N	sequence	6	SO	variant_genome	inversion_derived_bipartite_deficiency
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0000461	"A chromosomal deletion whereby a chromosome generated by recombination between two inversions; has a deficiency at each end of the inversion." [FB:km]	5740903	\N	\N	sequence	7	SO	genome	inversion_derived_bipartite_deficiency
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000461	"A chromosomal deletion whereby a chromosome generated by recombination between two inversions; has a deficiency at each end of the inversion." [FB:km]	6310857	\N	\N	sequence	8	SO	sequence_collection	inversion_derived_bipartite_deficiency
SO:0000462	\N	SOFA	"A non-functional descendant of a functional entity." [SO:cjm]	SO:0000462	"A non-functional descendant of a functional entity." [SO:cjm]	45412	\N	SOFA	sequence	0	SO	pseudogenic_region	pseudogenic_region
SO:0001411	SO:0000462	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000462	"A non-functional descendant of a functional entity." [SO:cjm]	490035	SOFA	SOFA	sequence	1	SO	biological_region	pseudogenic_region
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000462	"A non-functional descendant of a functional entity." [SO:cjm]	1072501	SOFA	SOFA	sequence	2	SO	region	pseudogenic_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000462	"A non-functional descendant of a functional entity." [SO:cjm]	1903543	SOFA	SOFA	sequence	3	SO	sequence_feature	pseudogenic_region
SO:0000463	\N	\N	"A gene that encodes more than one transcript." [SO:ke]	SO:0000463	"A gene that encodes more than one transcript." [SO:ke]	45413	\N	\N	sequence	0	SO	encodes_alternately_spliced_transcripts	encodes_alternately_spliced_transcripts
SO:0000401	SO:0000463	\N	"" []	SO:0000463	"A gene that encodes more than one transcript." [SO:ke]	490036	\N	\N	sequence	1	SO	gene_attribute	encodes_alternately_spliced_transcripts
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000463	"A gene that encodes more than one transcript." [SO:ke]	1072502	\N	\N	sequence	2	SO	feature_attribute	encodes_alternately_spliced_transcripts
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000463	"A gene that encodes more than one transcript." [SO:ke]	1903544	\N	\N	sequence	3	SO	sequence_attribute	encodes_alternately_spliced_transcripts
SO:0000464	\N	SOFA	"A non-functional descendant of an exon." [SO:ke]	SO:0000464	"A non-functional descendant of an exon." [SO:ke]	45414	\N	SOFA	sequence	0	SO	decayed_exon	decayed_exon
SO:0000462	SO:0000464	SOFA	"A non-functional descendant of a functional entity." [SO:cjm]	SO:0000464	"A non-functional descendant of an exon." [SO:ke]	490037	SOFA	SOFA	sequence	1	SO	pseudogenic_region	decayed_exon
SO:0001411	SO:0000462	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000464	"A non-functional descendant of an exon." [SO:ke]	1072503	SOFA	SOFA	sequence	2	SO	biological_region	decayed_exon
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000464	"A non-functional descendant of an exon." [SO:ke]	1903545	SOFA	SOFA	sequence	3	SO	region	decayed_exon
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000464	"A non-functional descendant of an exon." [SO:ke]	2928017	SOFA	SOFA	sequence	4	SO	sequence_feature	decayed_exon
SO:0000465	\N	\N	"A chromosome deletion whereby a chromosome is generated by recombination between two inversions; there is a deficiency at one end of the inversion and a duplication at the other end of the inversion." [FB:km]	SO:0000465	"A chromosome deletion whereby a chromosome is generated by recombination between two inversions; there is a deficiency at one end of the inversion and a duplication at the other end of the inversion." [FB:km]	45415	\N	\N	sequence	0	SO	inversion_derived_deficiency_plus_duplication	inversion_derived_deficiency_plus_duplication
SO:1000029	SO:0000465	\N	"An incomplete chromosome." [SO:ke]	SO:0000465	"A chromosome deletion whereby a chromosome is generated by recombination between two inversions; there is a deficiency at one end of the inversion and a duplication at the other end of the inversion." [FB:km]	490038	\N	\N	sequence	1	SO	chromosomal_deletion	inversion_derived_deficiency_plus_duplication
SO:1000038	SO:0000465	\N	"A duplication that occurred within a chromosome." [SO:ke]	SO:0000465	"A chromosome deletion whereby a chromosome is generated by recombination between two inversions; there is a deficiency at one end of the inversion and a duplication at the other end of the inversion." [FB:km]	490039	\N	\N	sequence	1	SO	intrachromosomal_duplication	inversion_derived_deficiency_plus_duplication
SO:1000028	SO:1000029	\N	"A chromosomal structure variation within a single chromosome." [SO:ke]	SO:0000465	"A chromosome deletion whereby a chromosome is generated by recombination between two inversions; there is a deficiency at one end of the inversion and a duplication at the other end of the inversion." [FB:km]	1072504	\N	\N	sequence	2	SO	intrachromosomal_mutation	inversion_derived_deficiency_plus_duplication
SO:1000028	SO:1000038	\N	"A chromosomal structure variation within a single chromosome." [SO:ke]	SO:0000465	"A chromosome deletion whereby a chromosome is generated by recombination between two inversions; there is a deficiency at one end of the inversion and a duplication at the other end of the inversion." [FB:km]	1072505	\N	\N	sequence	2	SO	intrachromosomal_mutation	inversion_derived_deficiency_plus_duplication
SO:1000037	SO:1000038	\N	"An extra chromosome." [SO:ke]	SO:0000465	"A chromosome deletion whereby a chromosome is generated by recombination between two inversions; there is a deficiency at one end of the inversion and a duplication at the other end of the inversion." [FB:km]	1072506	\N	\N	sequence	2	SO	chromosomal_duplication	inversion_derived_deficiency_plus_duplication
SO:1000183	SO:1000028	\N	"" []	SO:0000465	"A chromosome deletion whereby a chromosome is generated by recombination between two inversions; there is a deficiency at one end of the inversion and a duplication at the other end of the inversion." [FB:km]	1903546	\N	\N	sequence	3	SO	chromosome_structure_variation	inversion_derived_deficiency_plus_duplication
SO:1000183	SO:1000037	\N	"" []	SO:0000465	"A chromosome deletion whereby a chromosome is generated by recombination between two inversions; there is a deficiency at one end of the inversion and a duplication at the other end of the inversion." [FB:km]	1903547	\N	\N	sequence	3	SO	chromosome_structure_variation	inversion_derived_deficiency_plus_duplication
SO:0000240	SO:1000183	\N	"" []	SO:0000465	"A chromosome deletion whereby a chromosome is generated by recombination between two inversions; there is a deficiency at one end of the inversion and a duplication at the other end of the inversion." [FB:km]	2928018	\N	\N	sequence	4	SO	chromosome_variation	inversion_derived_deficiency_plus_duplication
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0000465	"A chromosome deletion whereby a chromosome is generated by recombination between two inversions; there is a deficiency at one end of the inversion and a duplication at the other end of the inversion." [FB:km]	4001382	\N	\N	sequence	5	SO	variant_collection	inversion_derived_deficiency_plus_duplication
SO:0001524	SO:0000240	\N	"" []	SO:0000465	"A chromosome deletion whereby a chromosome is generated by recombination between two inversions; there is a deficiency at one end of the inversion and a duplication at the other end of the inversion." [FB:km]	4001383	\N	\N	sequence	5	SO	chromosomally_aberrant_genome	inversion_derived_deficiency_plus_duplication
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000465	"A chromosome deletion whereby a chromosome is generated by recombination between two inversions; there is a deficiency at one end of the inversion and a duplication at the other end of the inversion." [FB:km]	4965952	\N	\N	sequence	6	SO	sequence_collection	inversion_derived_deficiency_plus_duplication
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0000465	"A chromosome deletion whereby a chromosome is generated by recombination between two inversions; there is a deficiency at one end of the inversion and a duplication at the other end of the inversion." [FB:km]	4965953	\N	\N	sequence	6	SO	variant_genome	inversion_derived_deficiency_plus_duplication
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0000465	"A chromosome deletion whereby a chromosome is generated by recombination between two inversions; there is a deficiency at one end of the inversion and a duplication at the other end of the inversion." [FB:km]	5740904	\N	\N	sequence	7	SO	genome	inversion_derived_deficiency_plus_duplication
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000465	"A chromosome deletion whereby a chromosome is generated by recombination between two inversions; there is a deficiency at one end of the inversion and a duplication at the other end of the inversion." [FB:km]	6310858	\N	\N	sequence	8	SO	sequence_collection	inversion_derived_deficiency_plus_duplication
SO:0000466	\N	\N	"Germline genomic DNA including L-part1, V-intron and V-exon, with the 5' UTR and 3' UTR." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000466	"Germline genomic DNA including L-part1, V-intron and V-exon, with the 5' UTR and 3' UTR." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45416	\N	\N	sequence	0	SO	V_gene_segment	V_gene_segment
SO:0000460	SO:0000466	\N	"" []	SO:0000466	"Germline genomic DNA including L-part1, V-intron and V-exon, with the 5' UTR and 3' UTR." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490040	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_segment	V_gene_segment
SO:0000301	SO:0000460	\N	"" []	SO:0000466	"Germline genomic DNA including L-part1, V-intron and V-exon, with the 5' UTR and 3' UTR." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072507	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	V_gene_segment
SO:0000300	SO:0000301	\N	"" []	SO:0000466	"Germline genomic DNA including L-part1, V-intron and V-exon, with the 5' UTR and 3' UTR." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903548	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	V_gene_segment
SO:0000299	SO:0000300	\N	"" []	SO:0000466	"Germline genomic DNA including L-part1, V-intron and V-exon, with the 5' UTR and 3' UTR." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928019	\N	\N	sequence	4	SO	specific_recombination_site	V_gene_segment
SO:0000669	SO:0000299	\N	"" []	SO:0000466	"Germline genomic DNA including L-part1, V-intron and V-exon, with the 5' UTR and 3' UTR." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001384	\N	\N	sequence	5	SO	sequence_rearrangement_feature	V_gene_segment
SO:0000298	SO:0000669	\N	"" []	SO:0000466	"Germline genomic DNA including L-part1, V-intron and V-exon, with the 5' UTR and 3' UTR." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4965954	\N	\N	sequence	6	SO	recombination_feature	V_gene_segment
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000466	"Germline genomic DNA including L-part1, V-intron and V-exon, with the 5' UTR and 3' UTR." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740905	\N	SOFA	sequence	7	SO	biological_region	V_gene_segment
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000466	"Germline genomic DNA including L-part1, V-intron and V-exon, with the 5' UTR and 3' UTR." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310859	SOFA	SOFA	sequence	8	SO	region	V_gene_segment
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000466	"Germline genomic DNA including L-part1, V-intron and V-exon, with the 5' UTR and 3' UTR." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699242	SOFA	SOFA	sequence	9	SO	sequence_feature	V_gene_segment
SO:0000467	\N	\N	"An attribute describing a gene sequence where the resulting protein is regulated by the stability of the resulting protein." [SO:ke]	SO:0000467	"An attribute describing a gene sequence where the resulting protein is regulated by the stability of the resulting protein." [SO:ke]	45417	\N	\N	sequence	0	SO	post_translationally_regulated_by_protein_stability	post_translationally_regulated_by_protein_stability
SO:0000130	SO:0000467	\N	"An attribute describing a gene that is regulated after it has been translated." [SO:ke]	SO:0000467	"An attribute describing a gene sequence where the resulting protein is regulated by the stability of the resulting protein." [SO:ke]	490041	\N	\N	sequence	1	SO	post_translationally_regulated	post_translationally_regulated_by_protein_stability
SO:0000119	SO:0000130	\N	"An attribute to describe a sequence that is regulated." [SO:ke]	SO:0000467	"An attribute describing a gene sequence where the resulting protein is regulated by the stability of the resulting protein." [SO:ke]	1072508	\N	\N	sequence	2	SO	regulated	post_translationally_regulated_by_protein_stability
SO:0000401	SO:0000119	\N	"" []	SO:0000467	"An attribute describing a gene sequence where the resulting protein is regulated by the stability of the resulting protein." [SO:ke]	1903549	\N	\N	sequence	3	SO	gene_attribute	post_translationally_regulated_by_protein_stability
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000467	"An attribute describing a gene sequence where the resulting protein is regulated by the stability of the resulting protein." [SO:ke]	2928020	\N	\N	sequence	4	SO	feature_attribute	post_translationally_regulated_by_protein_stability
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000467	"An attribute describing a gene sequence where the resulting protein is regulated by the stability of the resulting protein." [SO:ke]	4001385	\N	\N	sequence	5	SO	sequence_attribute	post_translationally_regulated_by_protein_stability
SO:0000468	\N	SOFA	"One of the pieces of sequence that make up a golden path." [SO:rd]	SO:0000468	"One of the pieces of sequence that make up a golden path." [SO:rd]	45418	\N	SOFA	sequence	0	SO	golden_path_fragment	golden_path_fragment
SO:0000143	SO:0000468	SOFA	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0000468	"One of the pieces of sequence that make up a golden path." [SO:rd]	490042	SOFA	SOFA	sequence	1	SO	assembly_component	golden_path_fragment
SO:0000688	SO:0000468	SOFA	"A set of subregions selected from sequence contigs which when concatenated form a nonredundant linear sequence." [SO:ls]	SO:0000468	"One of the pieces of sequence that make up a golden path." [SO:rd]	490043	SOFA	SOFA	sequence	1	SO	golden_path	golden_path_fragment
SO:0001410	SO:0000143	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000468	"One of the pieces of sequence that make up a golden path." [SO:rd]	1072509	SOFA	SOFA	sequence	2	SO	experimental_feature	golden_path_fragment
SO:0000353	SO:0000688	SOFA	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0000468	"One of the pieces of sequence that make up a golden path." [SO:rd]	1072510	SOFA	SOFA	sequence	2	SO	sequence_assembly	golden_path_fragment
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000468	"One of the pieces of sequence that make up a golden path." [SO:rd]	4001386	SOFA	SOFA	sequence	5	SO	region	golden_path_fragment
SO:0001248	SO:0000353	SOFA	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0000468	"One of the pieces of sequence that make up a golden path." [SO:rd]	1903551	SOFA	SOFA	sequence	3	SO	assembly	golden_path_fragment
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000468	"One of the pieces of sequence that make up a golden path." [SO:rd]	4132292	SOFA	SOFA	sequence	6	SO	sequence_feature	golden_path_fragment
SO:0001410	SO:0001248	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000468	"One of the pieces of sequence that make up a golden path." [SO:rd]	2928022	SOFA	SOFA	sequence	4	SO	experimental_feature	golden_path_fragment
SO:0000469	\N	\N	"An attribute describing a gene sequence where the resulting protein is modified to regulate it." [SO:ke]	SO:0000469	"An attribute describing a gene sequence where the resulting protein is modified to regulate it." [SO:ke]	45419	\N	\N	sequence	0	SO	post_translationally_regulated_by_protein_modification	post_translationally_regulated_by_protein_modification
SO:0000130	SO:0000469	\N	"An attribute describing a gene that is regulated after it has been translated." [SO:ke]	SO:0000469	"An attribute describing a gene sequence where the resulting protein is modified to regulate it." [SO:ke]	490044	\N	\N	sequence	1	SO	post_translationally_regulated	post_translationally_regulated_by_protein_modification
SO:0000119	SO:0000130	\N	"An attribute to describe a sequence that is regulated." [SO:ke]	SO:0000469	"An attribute describing a gene sequence where the resulting protein is modified to regulate it." [SO:ke]	1072511	\N	\N	sequence	2	SO	regulated	post_translationally_regulated_by_protein_modification
SO:0000401	SO:0000119	\N	"" []	SO:0000469	"An attribute describing a gene sequence where the resulting protein is modified to regulate it." [SO:ke]	1903552	\N	\N	sequence	3	SO	gene_attribute	post_translationally_regulated_by_protein_modification
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000469	"An attribute describing a gene sequence where the resulting protein is modified to regulate it." [SO:ke]	2928023	\N	\N	sequence	4	SO	feature_attribute	post_translationally_regulated_by_protein_modification
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000469	"An attribute describing a gene sequence where the resulting protein is modified to regulate it." [SO:ke]	4001387	\N	\N	sequence	5	SO	sequence_attribute	post_translationally_regulated_by_protein_modification
SO:0000470	\N	\N	"Germline genomic DNA of an immunoglobulin/T-cell receptor gene including J-region with 5' UTR (SO:0000204) and 3' UTR (SO:0000205), also designated as J-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000470	"Germline genomic DNA of an immunoglobulin/T-cell receptor gene including J-region with 5' UTR (SO:0000204) and 3' UTR (SO:0000205), also designated as J-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45420	\N	\N	sequence	0	SO	J_gene_segment	J_gene_segment
SO:0000460	SO:0000470	\N	"" []	SO:0000470	"Germline genomic DNA of an immunoglobulin/T-cell receptor gene including J-region with 5' UTR (SO:0000204) and 3' UTR (SO:0000205), also designated as J-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490045	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_segment	J_gene_segment
SO:0000301	SO:0000460	\N	"" []	SO:0000470	"Germline genomic DNA of an immunoglobulin/T-cell receptor gene including J-region with 5' UTR (SO:0000204) and 3' UTR (SO:0000205), also designated as J-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072512	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	J_gene_segment
SO:0000300	SO:0000301	\N	"" []	SO:0000470	"Germline genomic DNA of an immunoglobulin/T-cell receptor gene including J-region with 5' UTR (SO:0000204) and 3' UTR (SO:0000205), also designated as J-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903553	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	J_gene_segment
SO:0000299	SO:0000300	\N	"" []	SO:0000470	"Germline genomic DNA of an immunoglobulin/T-cell receptor gene including J-region with 5' UTR (SO:0000204) and 3' UTR (SO:0000205), also designated as J-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928024	\N	\N	sequence	4	SO	specific_recombination_site	J_gene_segment
SO:0000669	SO:0000299	\N	"" []	SO:0000470	"Germline genomic DNA of an immunoglobulin/T-cell receptor gene including J-region with 5' UTR (SO:0000204) and 3' UTR (SO:0000205), also designated as J-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001388	\N	\N	sequence	5	SO	sequence_rearrangement_feature	J_gene_segment
SO:0000298	SO:0000669	\N	"" []	SO:0000470	"Germline genomic DNA of an immunoglobulin/T-cell receptor gene including J-region with 5' UTR (SO:0000204) and 3' UTR (SO:0000205), also designated as J-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4965955	\N	\N	sequence	6	SO	recombination_feature	J_gene_segment
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000470	"Germline genomic DNA of an immunoglobulin/T-cell receptor gene including J-region with 5' UTR (SO:0000204) and 3' UTR (SO:0000205), also designated as J-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740906	\N	SOFA	sequence	7	SO	biological_region	J_gene_segment
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000470	"Germline genomic DNA of an immunoglobulin/T-cell receptor gene including J-region with 5' UTR (SO:0000204) and 3' UTR (SO:0000205), also designated as J-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310860	SOFA	SOFA	sequence	8	SO	region	J_gene_segment
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000470	"Germline genomic DNA of an immunoglobulin/T-cell receptor gene including J-region with 5' UTR (SO:0000204) and 3' UTR (SO:0000205), also designated as J-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699243	SOFA	SOFA	sequence	9	SO	sequence_feature	J_gene_segment
SO:0000471	\N	\N	"The gene product is involved in its own transcriptional regulation." [SO:ke]	SO:0000471	"The gene product is involved in its own transcriptional regulation." [SO:ke]	45421	\N	\N	sequence	0	SO	autoregulated	autoregulated
SO:0000123	SO:0000471	\N	"An attribute describing a gene that is regulated at transcription." [SO:ma]	SO:0000471	"The gene product is involved in its own transcriptional regulation." [SO:ke]	490046	\N	\N	sequence	1	SO	transcriptionally_regulated	autoregulated
SO:0000119	SO:0000123	\N	"An attribute to describe a sequence that is regulated." [SO:ke]	SO:0000471	"The gene product is involved in its own transcriptional regulation." [SO:ke]	1072513	\N	\N	sequence	2	SO	regulated	autoregulated
SO:0000401	SO:0000119	\N	"" []	SO:0000471	"The gene product is involved in its own transcriptional regulation." [SO:ke]	1903554	\N	\N	sequence	3	SO	gene_attribute	autoregulated
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000471	"The gene product is involved in its own transcriptional regulation." [SO:ke]	2928025	\N	\N	sequence	4	SO	feature_attribute	autoregulated
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000471	"The gene product is involved in its own transcriptional regulation." [SO:ke]	4001389	\N	\N	sequence	5	SO	sequence_attribute	autoregulated
SO:0000472	\N	SOFA	"A set of regions which overlap with minimal polymorphism to form a linear sequence." [SO:cjm]	SO:0000472	"A set of regions which overlap with minimal polymorphism to form a linear sequence." [SO:cjm]	45422	\N	SOFA	sequence	0	SO	tiling_path	tiling_path
SO:0000353	SO:0000472	SOFA	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0000472	"A set of regions which overlap with minimal polymorphism to form a linear sequence." [SO:cjm]	490047	SOFA	SOFA	sequence	1	SO	sequence_assembly	tiling_path
SO:0001248	SO:0000353	SOFA	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0000472	"A set of regions which overlap with minimal polymorphism to form a linear sequence." [SO:cjm]	1072514	SOFA	SOFA	sequence	2	SO	assembly	tiling_path
SO:0001410	SO:0001248	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000472	"A set of regions which overlap with minimal polymorphism to form a linear sequence." [SO:cjm]	1903555	SOFA	SOFA	sequence	3	SO	experimental_feature	tiling_path
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000472	"A set of regions which overlap with minimal polymorphism to form a linear sequence." [SO:cjm]	2928026	SOFA	SOFA	sequence	4	SO	region	tiling_path
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000472	"A set of regions which overlap with minimal polymorphism to form a linear sequence." [SO:cjm]	4001390	SOFA	SOFA	sequence	5	SO	sequence_feature	tiling_path
SO:0000473	\N	\N	"The gene product is involved in its own transcriptional regulation where it decreases transcription." [SO:ke]	SO:0000473	"The gene product is involved in its own transcriptional regulation where it decreases transcription." [SO:ke]	45423	\N	\N	sequence	0	SO	negatively_autoregulated	negatively_autoregulated
SO:0000126	SO:0000473	\N	"A repressor molecule is required for transcription to stop." [SO:ke]	SO:0000473	"The gene product is involved in its own transcriptional regulation where it decreases transcription." [SO:ke]	490048	\N	\N	sequence	1	SO	transcriptionally_repressed	negatively_autoregulated
SO:0000471	SO:0000473	\N	"The gene product is involved in its own transcriptional regulation." [SO:ke]	SO:0000473	"The gene product is involved in its own transcriptional regulation where it decreases transcription." [SO:ke]	490049	\N	\N	sequence	1	SO	autoregulated	negatively_autoregulated
SO:0000123	SO:0000126	\N	"An attribute describing a gene that is regulated at transcription." [SO:ma]	SO:0000473	"The gene product is involved in its own transcriptional regulation where it decreases transcription." [SO:ke]	1072515	\N	\N	sequence	2	SO	transcriptionally_regulated	negatively_autoregulated
SO:0000123	SO:0000471	\N	"An attribute describing a gene that is regulated at transcription." [SO:ma]	SO:0000473	"The gene product is involved in its own transcriptional regulation where it decreases transcription." [SO:ke]	1072516	\N	\N	sequence	2	SO	transcriptionally_regulated	negatively_autoregulated
SO:0000119	SO:0000123	\N	"An attribute to describe a sequence that is regulated." [SO:ke]	SO:0000473	"The gene product is involved in its own transcriptional regulation where it decreases transcription." [SO:ke]	1903556	\N	\N	sequence	3	SO	regulated	negatively_autoregulated
SO:0000401	SO:0000119	\N	"" []	SO:0000473	"The gene product is involved in its own transcriptional regulation where it decreases transcription." [SO:ke]	2928027	\N	\N	sequence	4	SO	gene_attribute	negatively_autoregulated
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000473	"The gene product is involved in its own transcriptional regulation where it decreases transcription." [SO:ke]	4001391	\N	\N	sequence	5	SO	feature_attribute	negatively_autoregulated
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000473	"The gene product is involved in its own transcriptional regulation where it decreases transcription." [SO:ke]	4965956	\N	\N	sequence	6	SO	sequence_attribute	negatively_autoregulated
SO:0000474	\N	SOFA	"A piece of sequence that makes up a tiling_path (SO:0000472)." [SO:ke]	SO:0000474	"A piece of sequence that makes up a tiling_path (SO:0000472)." [SO:ke]	45424	\N	SOFA	sequence	0	SO	tiling_path_fragment	tiling_path_fragment
SO:0000143	SO:0000474	SOFA	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0000474	"A piece of sequence that makes up a tiling_path (SO:0000472)." [SO:ke]	490050	SOFA	SOFA	sequence	1	SO	assembly_component	tiling_path_fragment
SO:0000472	SO:0000474	SOFA	"A set of regions which overlap with minimal polymorphism to form a linear sequence." [SO:cjm]	SO:0000474	"A piece of sequence that makes up a tiling_path (SO:0000472)." [SO:ke]	490051	SOFA	SOFA	sequence	1	SO	tiling_path	tiling_path_fragment
SO:0001410	SO:0000143	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000474	"A piece of sequence that makes up a tiling_path (SO:0000472)." [SO:ke]	1072517	SOFA	SOFA	sequence	2	SO	experimental_feature	tiling_path_fragment
SO:0000353	SO:0000472	SOFA	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0000474	"A piece of sequence that makes up a tiling_path (SO:0000472)." [SO:ke]	1072518	SOFA	SOFA	sequence	2	SO	sequence_assembly	tiling_path_fragment
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000474	"A piece of sequence that makes up a tiling_path (SO:0000472)." [SO:ke]	4001392	SOFA	SOFA	sequence	5	SO	region	tiling_path_fragment
SO:0001248	SO:0000353	SOFA	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0000474	"A piece of sequence that makes up a tiling_path (SO:0000472)." [SO:ke]	1903558	SOFA	SOFA	sequence	3	SO	assembly	tiling_path_fragment
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000474	"A piece of sequence that makes up a tiling_path (SO:0000472)." [SO:ke]	4132293	SOFA	SOFA	sequence	6	SO	sequence_feature	tiling_path_fragment
SO:0001410	SO:0001248	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000474	"A piece of sequence that makes up a tiling_path (SO:0000472)." [SO:ke]	2928029	SOFA	SOFA	sequence	4	SO	experimental_feature	tiling_path_fragment
SO:0000475	\N	\N	"The gene product is involved in its own transcriptional regulation, where it increases transcription." [SO:ke]	SO:0000475	"The gene product is involved in its own transcriptional regulation, where it increases transcription." [SO:ke]	45425	\N	\N	sequence	0	SO	positively_autoregulated	positively_autoregulated
SO:0000125	SO:0000475	\N	"An inducer molecule is required for transcription to occur." [SO:ke]	SO:0000475	"The gene product is involved in its own transcriptional regulation, where it increases transcription." [SO:ke]	490052	\N	\N	sequence	1	SO	transcriptionally_induced	positively_autoregulated
SO:0000471	SO:0000475	\N	"The gene product is involved in its own transcriptional regulation." [SO:ke]	SO:0000475	"The gene product is involved in its own transcriptional regulation, where it increases transcription." [SO:ke]	490053	\N	\N	sequence	1	SO	autoregulated	positively_autoregulated
SO:0000123	SO:0000125	\N	"An attribute describing a gene that is regulated at transcription." [SO:ma]	SO:0000475	"The gene product is involved in its own transcriptional regulation, where it increases transcription." [SO:ke]	1072519	\N	\N	sequence	2	SO	transcriptionally_regulated	positively_autoregulated
SO:0000123	SO:0000471	\N	"An attribute describing a gene that is regulated at transcription." [SO:ma]	SO:0000475	"The gene product is involved in its own transcriptional regulation, where it increases transcription." [SO:ke]	1072520	\N	\N	sequence	2	SO	transcriptionally_regulated	positively_autoregulated
SO:0000119	SO:0000123	\N	"An attribute to describe a sequence that is regulated." [SO:ke]	SO:0000475	"The gene product is involved in its own transcriptional regulation, where it increases transcription." [SO:ke]	1903559	\N	\N	sequence	3	SO	regulated	positively_autoregulated
SO:0000401	SO:0000119	\N	"" []	SO:0000475	"The gene product is involved in its own transcriptional regulation, where it increases transcription." [SO:ke]	2928030	\N	\N	sequence	4	SO	gene_attribute	positively_autoregulated
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000475	"The gene product is involved in its own transcriptional regulation, where it increases transcription." [SO:ke]	4001393	\N	\N	sequence	5	SO	feature_attribute	positively_autoregulated
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000475	"The gene product is involved in its own transcriptional regulation, where it increases transcription." [SO:ke]	4965957	\N	\N	sequence	6	SO	sequence_attribute	positively_autoregulated
SO:0000476	\N	\N	"A DNA sequencer read which is part of a contig." [SO:ke]	SO:0000476	"A DNA sequencer read which is part of a contig." [SO:ke]	45426	\N	\N	sequence	0	SO	contig_read	contig_read
SO:0000150	SO:0000476	\N	"A sequence obtained from a single sequencing experiment. Typically a read is produced when a base calling program interprets information from a chromatogram trace file produced from a sequencing machine." [SO:rd]	SO:0000476	"A DNA sequencer read which is part of a contig." [SO:ke]	490054	\N	SOFA	sequence	1	SO	read	contig_read
SO:0000143	SO:0000150	\N	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0000476	"A DNA sequencer read which is part of a contig." [SO:ke]	1072521	SOFA	SOFA	sequence	2	SO	assembly_component	contig_read
SO:0000149	SO:0000150	\N	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	SO:0000476	"A DNA sequencer read which is part of a contig." [SO:ke]	1072522	SOFA	SOFA	sequence	2	SO	contig	contig_read
SO:0001410	SO:0000143	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000476	"A DNA sequencer read which is part of a contig." [SO:ke]	2928032	SOFA	SOFA	sequence	4	SO	experimental_feature	contig_read
SO:0000143	SO:0000149	\N	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0000476	"A DNA sequencer read which is part of a contig." [SO:ke]	1903561	SOFA	SOFA	sequence	3	SO	assembly_component	contig_read
SO:0000148	SO:0000149	\N	"One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's." [SO:ls]	SO:0000476	"A DNA sequencer read which is part of a contig." [SO:ke]	1903562	SOFA	SOFA	sequence	3	SO	supercontig	contig_read
SO:0000353	SO:0000149	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0000476	"A DNA sequencer read which is part of a contig." [SO:ke]	1903563	SOFA	SOFA	sequence	3	SO	sequence_assembly	contig_read
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000476	"A DNA sequencer read which is part of a contig." [SO:ke]	6469731	SOFA	SOFA	sequence	9	SO	region	contig_read
SO:0000719	SO:0000148	\N	"An ordered and oriented set of scaffolds based on somewhat weaker sets of inferential evidence such as one set of mate pair reads together with supporting evidence from ESTs or location of markers from SNP or microsatellite maps, or cytogenetic localization of contained markers." [FB:WG]	SO:0000476	"A DNA sequencer read which is part of a contig." [SO:ke]	2928033	SOFA	SOFA	sequence	4	SO	ultracontig	contig_read
SO:0001876	SO:0000148	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0000476	"A DNA sequencer read which is part of a contig." [SO:ke]	2928034	SOFA	\N	sequence	4	SO	partial_genomic_sequence_assembly	contig_read
SO:0001248	SO:0000353	\N	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0000476	"A DNA sequencer read which is part of a contig." [SO:ke]	5407392	SOFA	SOFA	sequence	7	SO	assembly	contig_read
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000476	"A DNA sequencer read which is part of a contig." [SO:ke]	6778554	SOFA	SOFA	sequence	10	SO	sequence_feature	contig_read
SO:0001876	SO:0000719	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0000476	"A DNA sequencer read which is part of a contig." [SO:ke]	4001395	SOFA	\N	sequence	5	SO	partial_genomic_sequence_assembly	contig_read
SO:0000353	SO:0001876	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0000476	"A DNA sequencer read which is part of a contig." [SO:ke]	4965958	\N	SOFA	sequence	6	SO	sequence_assembly	contig_read
SO:0001410	SO:0001248	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000476	"A DNA sequencer read which is part of a contig." [SO:ke]	5876435	SOFA	SOFA	sequence	8	SO	experimental_feature	contig_read
SO:0000478	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene including C-region (and introns if present) with 5' UTR (SO:0000204) and 3' UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000478	"Genomic DNA of immunoglobulin/T-cell receptor gene including C-region (and introns if present) with 5' UTR (SO:0000204) and 3' UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45427	\N	\N	sequence	0	SO	C_gene_segment	C_gene_segment
SO:0000460	SO:0000478	\N	"" []	SO:0000478	"Genomic DNA of immunoglobulin/T-cell receptor gene including C-region (and introns if present) with 5' UTR (SO:0000204) and 3' UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490055	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_segment	C_gene_segment
SO:0000301	SO:0000460	\N	"" []	SO:0000478	"Genomic DNA of immunoglobulin/T-cell receptor gene including C-region (and introns if present) with 5' UTR (SO:0000204) and 3' UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072523	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	C_gene_segment
SO:0000300	SO:0000301	\N	"" []	SO:0000478	"Genomic DNA of immunoglobulin/T-cell receptor gene including C-region (and introns if present) with 5' UTR (SO:0000204) and 3' UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903564	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	C_gene_segment
SO:0000299	SO:0000300	\N	"" []	SO:0000478	"Genomic DNA of immunoglobulin/T-cell receptor gene including C-region (and introns if present) with 5' UTR (SO:0000204) and 3' UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928036	\N	\N	sequence	4	SO	specific_recombination_site	C_gene_segment
SO:0000669	SO:0000299	\N	"" []	SO:0000478	"Genomic DNA of immunoglobulin/T-cell receptor gene including C-region (and introns if present) with 5' UTR (SO:0000204) and 3' UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001398	\N	\N	sequence	5	SO	sequence_rearrangement_feature	C_gene_segment
SO:0000298	SO:0000669	\N	"" []	SO:0000478	"Genomic DNA of immunoglobulin/T-cell receptor gene including C-region (and introns if present) with 5' UTR (SO:0000204) and 3' UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4965961	\N	\N	sequence	6	SO	recombination_feature	C_gene_segment
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000478	"Genomic DNA of immunoglobulin/T-cell receptor gene including C-region (and introns if present) with 5' UTR (SO:0000204) and 3' UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740907	\N	SOFA	sequence	7	SO	biological_region	C_gene_segment
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000478	"Genomic DNA of immunoglobulin/T-cell receptor gene including C-region (and introns if present) with 5' UTR (SO:0000204) and 3' UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310861	SOFA	SOFA	sequence	8	SO	region	C_gene_segment
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000478	"Genomic DNA of immunoglobulin/T-cell receptor gene including C-region (and introns if present) with 5' UTR (SO:0000204) and 3' UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699244	SOFA	SOFA	sequence	9	SO	sequence_feature	C_gene_segment
SO:0000479	\N	\N	"A transcript that is trans-spliced." [SO:xp]	SO:0000479	"A transcript that is trans-spliced." [SO:xp]	45428	\N	\N	sequence	0	SO	trans_spliced_transcript	trans_spliced_transcript
SO:0000673	SO:0000479	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000479	"A transcript that is trans-spliced." [SO:xp]	490056	\N	SOFA	sequence	1	SO	transcript	trans_spliced_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000479	"A transcript that is trans-spliced." [SO:xp]	1072524	SOFA	SOFA	sequence	2	SO	gene_member_region	trans_spliced_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000479	"A transcript that is trans-spliced." [SO:xp]	1903565	SOFA	SOFA	sequence	3	SO	biological_region	trans_spliced_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000479	"A transcript that is trans-spliced." [SO:xp]	2928037	SOFA	SOFA	sequence	4	SO	region	trans_spliced_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000479	"A transcript that is trans-spliced." [SO:xp]	4001399	SOFA	SOFA	sequence	5	SO	sequence_feature	trans_spliced_transcript
SO:0000480	\N	\N	"A clone which is part of a tiling path. A tiling path is a set of sequencing substrates, typically clones, which have been selected in order to efficiently cover a region of the genome in preparation for sequencing and assembly." [SO:ke]	SO:0000480	"A clone which is part of a tiling path. A tiling path is a set of sequencing substrates, typically clones, which have been selected in order to efficiently cover a region of the genome in preparation for sequencing and assembly." [SO:ke]	45429	\N	\N	sequence	0	SO	tiling_path_clone	tiling_path_clone
SO:0000151	SO:0000480	\N	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0000480	"A clone which is part of a tiling path. A tiling path is a set of sequencing substrates, typically clones, which have been selected in order to efficiently cover a region of the genome in preparation for sequencing and assembly." [SO:ke]	490057	\N	SOFA	sequence	1	SO	clone	tiling_path_clone
SO:0000474	SO:0000480	\N	"A piece of sequence that makes up a tiling_path (SO:0000472)." [SO:ke]	SO:0000480	"A clone which is part of a tiling path. A tiling path is a set of sequencing substrates, typically clones, which have been selected in order to efficiently cover a region of the genome in preparation for sequencing and assembly." [SO:ke]	490058	\N	SOFA	sequence	1	SO	tiling_path_fragment	tiling_path_clone
SO:0000695	SO:0000151	\N	"A sequence used in experiment." [SO:ke]	SO:0000480	"A clone which is part of a tiling path. A tiling path is a set of sequencing substrates, typically clones, which have been selected in order to efficiently cover a region of the genome in preparation for sequencing and assembly." [SO:ke]	1072525	SOFA	SOFA	sequence	2	SO	reagent	tiling_path_clone
SO:0000143	SO:0000474	\N	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0000480	"A clone which is part of a tiling path. A tiling path is a set of sequencing substrates, typically clones, which have been selected in order to efficiently cover a region of the genome in preparation for sequencing and assembly." [SO:ke]	1072526	SOFA	SOFA	sequence	2	SO	assembly_component	tiling_path_clone
SO:0000472	SO:0000474	\N	"A set of regions which overlap with minimal polymorphism to form a linear sequence." [SO:cjm]	SO:0000480	"A clone which is part of a tiling path. A tiling path is a set of sequencing substrates, typically clones, which have been selected in order to efficiently cover a region of the genome in preparation for sequencing and assembly." [SO:ke]	1072527	SOFA	SOFA	sequence	2	SO	tiling_path	tiling_path_clone
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000480	"A clone which is part of a tiling path. A tiling path is a set of sequencing substrates, typically clones, which have been selected in order to efficiently cover a region of the genome in preparation for sequencing and assembly." [SO:ke]	1903566	SOFA	SOFA	sequence	3	SO	biomaterial_region	tiling_path_clone
SO:0001410	SO:0000143	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000480	"A clone which is part of a tiling path. A tiling path is a set of sequencing substrates, typically clones, which have been selected in order to efficiently cover a region of the genome in preparation for sequencing and assembly." [SO:ke]	1903567	SOFA	SOFA	sequence	3	SO	experimental_feature	tiling_path_clone
SO:0000353	SO:0000472	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0000480	"A clone which is part of a tiling path. A tiling path is a set of sequencing substrates, typically clones, which have been selected in order to efficiently cover a region of the genome in preparation for sequencing and assembly." [SO:ke]	1903568	SOFA	SOFA	sequence	3	SO	sequence_assembly	tiling_path_clone
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000480	"A clone which is part of a tiling path. A tiling path is a set of sequencing substrates, typically clones, which have been selected in order to efficiently cover a region of the genome in preparation for sequencing and assembly." [SO:ke]	2928038	SOFA	SOFA	sequence	4	SO	region	tiling_path_clone
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000480	"A clone which is part of a tiling path. A tiling path is a set of sequencing substrates, typically clones, which have been selected in order to efficiently cover a region of the genome in preparation for sequencing and assembly." [SO:ke]	4965962	SOFA	SOFA	sequence	6	SO	region	tiling_path_clone
SO:0001248	SO:0000353	\N	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0000480	"A clone which is part of a tiling path. A tiling path is a set of sequencing substrates, typically clones, which have been selected in order to efficiently cover a region of the genome in preparation for sequencing and assembly." [SO:ke]	2928040	SOFA	SOFA	sequence	4	SO	assembly	tiling_path_clone
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000480	"A clone which is part of a tiling path. A tiling path is a set of sequencing substrates, typically clones, which have been selected in order to efficiently cover a region of the genome in preparation for sequencing and assembly." [SO:ke]	5180680	SOFA	SOFA	sequence	7	SO	sequence_feature	tiling_path_clone
SO:0001410	SO:0001248	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000480	"A clone which is part of a tiling path. A tiling path is a set of sequencing substrates, typically clones, which have been selected in order to efficiently cover a region of the genome in preparation for sequencing and assembly." [SO:ke]	4001401	SOFA	SOFA	sequence	5	SO	experimental_feature	tiling_path_clone
SO:0000481	\N	\N	"An inverted repeat (SO:0000294) occurring at the termini of a DNA transposon." [SO:ke]	SO:0000481	"An inverted repeat (SO:0000294) occurring at the termini of a DNA transposon." [SO:ke]	45430	\N	\N	sequence	0	SO	terminal_inverted_repeat	terminal_inverted_repeat
SO:0000208	SO:0000481	\N	"A DNA transposable element defined as having termini with perfect, or nearly perfect short inverted repeats, generally 10 - 40 nucleotides long." [http://www.genetics.org/cgi/reprint/156/4/1983.pdf]	SO:0000481	"An inverted repeat (SO:0000294) occurring at the termini of a DNA transposon." [SO:ke]	490059	\N	\N	sequence	1	SO	terminal_inverted_repeat_element	terminal_inverted_repeat
SO:0000294	SO:0000481	\N	"The sequence is complementarily repeated on the opposite strand. It is a palindrome, and it may, or may not be hyphenated. Examples: GCTGATCAGC, or GCTGA-----TCAGC." [SO:ke]	SO:0000481	"An inverted repeat (SO:0000294) occurring at the termini of a DNA transposon." [SO:ke]	490060	\N	SOFA	sequence	1	SO	inverted_repeat	terminal_inverted_repeat
SO:0000182	SO:0000208	\N	"A transposon where the mechanism of transposition is via a DNA intermediate." [SO:ke]	SO:0000481	"An inverted repeat (SO:0000294) occurring at the termini of a DNA transposon." [SO:ke]	1072528	\N	\N	sequence	2	SO	DNA_transposon	terminal_inverted_repeat
SO:0000657	SO:0000294	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000481	"An inverted repeat (SO:0000294) occurring at the termini of a DNA transposon." [SO:ke]	1072529	SOFA	SOFA	sequence	2	SO	repeat_region	terminal_inverted_repeat
SO:0000101	SO:0000182	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000481	"An inverted repeat (SO:0000294) occurring at the termini of a DNA transposon." [SO:ke]	1903569	\N	SOFA	sequence	3	SO	transposable_element	terminal_inverted_repeat
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000481	"An inverted repeat (SO:0000294) occurring at the termini of a DNA transposon." [SO:ke]	1903570	SOFA	SOFA	sequence	3	SO	biological_region	terminal_inverted_repeat
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000481	"An inverted repeat (SO:0000294) occurring at the termini of a DNA transposon." [SO:ke]	2928041	SOFA	SOFA	sequence	4	SO	integrated_mobile_genetic_element	terminal_inverted_repeat
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000481	"An inverted repeat (SO:0000294) occurring at the termini of a DNA transposon." [SO:ke]	5740908	SOFA	SOFA	sequence	7	SO	region	terminal_inverted_repeat
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000481	"An inverted repeat (SO:0000294) occurring at the termini of a DNA transposon." [SO:ke]	4001402	SOFA	SOFA	sequence	5	SO	mobile_genetic_element	terminal_inverted_repeat
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000481	"An inverted repeat (SO:0000294) occurring at the termini of a DNA transposon." [SO:ke]	5876436	SOFA	SOFA	sequence	8	SO	sequence_feature	terminal_inverted_repeat
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000481	"An inverted repeat (SO:0000294) occurring at the termini of a DNA transposon." [SO:ke]	4965963	SOFA	SOFA	sequence	6	SO	biological_region	terminal_inverted_repeat
SO:0000482	\N	\N	"" []	SO:0000482	"" []	45431	\N	\N	sequence	0	SO	vertebrate_immunoglobulin_T_cell_receptor_gene_cluster	vertebrate_immunoglobulin_T_cell_receptor_gene_cluster
SO:0000301	SO:0000482	\N	"" []	SO:0000482	"" []	490061	\N	\N	sequence	1	SO	vertebrate_immune_system_gene_recombination_feature	vertebrate_immunoglobulin_T_cell_receptor_gene_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000482	"" []	1072530	\N	\N	sequence	2	SO	recombination_feature_of_rearranged_gene	vertebrate_immunoglobulin_T_cell_receptor_gene_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000482	"" []	1903571	\N	\N	sequence	3	SO	specific_recombination_site	vertebrate_immunoglobulin_T_cell_receptor_gene_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000482	"" []	2928043	\N	\N	sequence	4	SO	sequence_rearrangement_feature	vertebrate_immunoglobulin_T_cell_receptor_gene_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000482	"" []	4001404	\N	\N	sequence	5	SO	recombination_feature	vertebrate_immunoglobulin_T_cell_receptor_gene_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000482	"" []	4965964	\N	SOFA	sequence	6	SO	biological_region	vertebrate_immunoglobulin_T_cell_receptor_gene_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000482	"" []	5740909	SOFA	SOFA	sequence	7	SO	region	vertebrate_immunoglobulin_T_cell_receptor_gene_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000482	"" []	6310862	SOFA	SOFA	sequence	8	SO	sequence_feature	vertebrate_immunoglobulin_T_cell_receptor_gene_cluster
SO:0000483	\N	SOFA	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000483	"A primary transcript that is never translated into a protein." [SO:ke]	45432	\N	SOFA	sequence	0	SO	nc_primary_transcript	nc_primary_transcript
SO:0000185	SO:0000483	SOFA	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000483	"A primary transcript that is never translated into a protein." [SO:ke]	490062	SOFA	SOFA	sequence	1	SO	primary_transcript	nc_primary_transcript
SO:0000673	SO:0000185	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000483	"A primary transcript that is never translated into a protein." [SO:ke]	1072531	SOFA	SOFA	sequence	2	SO	transcript	nc_primary_transcript
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000483	"A primary transcript that is never translated into a protein." [SO:ke]	1903572	SOFA	SOFA	sequence	3	SO	gene_member_region	nc_primary_transcript
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000483	"A primary transcript that is never translated into a protein." [SO:ke]	2928044	SOFA	SOFA	sequence	4	SO	biological_region	nc_primary_transcript
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000483	"A primary transcript that is never translated into a protein." [SO:ke]	4001405	SOFA	SOFA	sequence	5	SO	region	nc_primary_transcript
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000483	"A primary transcript that is never translated into a protein." [SO:ke]	4965965	SOFA	SOFA	sequence	6	SO	sequence_feature	nc_primary_transcript
SO:0000484	\N	SOFA	"The sequence of the 3' exon that is not coding." [SO:ke]	SO:0000484	"The sequence of the 3' exon that is not coding." [SO:ke]	45433	\N	SOFA	sequence	0	SO	three_prime_coding_exon_noncoding_region	three_prime_coding_exon_noncoding_region
SO:0000202	SO:0000484	SOFA	"The coding exon that is most 3-prime on a given transcript." [SO:ma]	SO:0000484	"The sequence of the 3' exon that is not coding." [SO:ke]	490063	SOFA	\N	sequence	1	SO	three_prime_coding_exon	three_prime_coding_exon_noncoding_region
SO:0001214	SO:0000484	SOFA	"The maximal intersection of exon and UTR." [SO:ke]	SO:0000484	"The sequence of the 3' exon that is not coding." [SO:ke]	490064	SOFA	SOFA	sequence	1	SO	noncoding_region_of_exon	three_prime_coding_exon_noncoding_region
SO:0000195	SO:0000202	SOFA	"An exon whereby at least one base is part of a codon (here, 'codon' is inclusive of the stop_codon)." [SO:ke]	SO:0000484	"The sequence of the 3' exon that is not coding." [SO:ke]	1072532	\N	SOFA	sequence	2	SO	coding_exon	three_prime_coding_exon_noncoding_region
SO:0000852	SO:0001214	SOFA	"A region of an exon." [RSC:cb]	SO:0000484	"The sequence of the 3' exon that is not coding." [SO:ke]	1072533	SOFA	SOFA	sequence	2	SO	exon_region	three_prime_coding_exon_noncoding_region
SO:0000147	SO:0000195	SOFA	"A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing." [SO:ke]	SO:0000484	"The sequence of the 3' exon that is not coding." [SO:ke]	1903573	SOFA	SOFA	sequence	3	SO	exon	three_prime_coding_exon_noncoding_region
SO:0000147	SO:0000852	SOFA	"A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing." [SO:ke]	SO:0000484	"The sequence of the 3' exon that is not coding." [SO:ke]	1903574	SOFA	SOFA	sequence	3	SO	exon	three_prime_coding_exon_noncoding_region
SO:0000833	SO:0000852	SOFA	"A region of a transcript." [SO:ke]	SO:0000484	"The sequence of the 3' exon that is not coding." [SO:ke]	1903575	SOFA	SOFA	sequence	3	SO	transcript_region	three_prime_coding_exon_noncoding_region
SO:0000833	SO:0000147	SOFA	"A region of a transcript." [SO:ke]	SO:0000484	"The sequence of the 3' exon that is not coding." [SO:ke]	2928045	SOFA	SOFA	sequence	4	SO	transcript_region	three_prime_coding_exon_noncoding_region
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000484	"The sequence of the 3' exon that is not coding." [SO:ke]	4001406	SOFA	SOFA	sequence	5	SO	transcript	three_prime_coding_exon_noncoding_region
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000484	"The sequence of the 3' exon that is not coding." [SO:ke]	4001407	SOFA	SOFA	sequence	5	SO	biological_region	three_prime_coding_exon_noncoding_region
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000484	"The sequence of the 3' exon that is not coding." [SO:ke]	4385731	SOFA	SOFA	sequence	6	SO	gene_member_region	three_prime_coding_exon_noncoding_region
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000484	"The sequence of the 3' exon that is not coding." [SO:ke]	6146620	SOFA	SOFA	sequence	8	SO	region	three_prime_coding_exon_noncoding_region
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000484	"The sequence of the 3' exon that is not coding." [SO:ke]	5407393	SOFA	SOFA	sequence	7	SO	biological_region	three_prime_coding_exon_noncoding_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000484	"The sequence of the 3' exon that is not coding." [SO:ke]	6469732	SOFA	SOFA	sequence	9	SO	sequence_feature	three_prime_coding_exon_noncoding_region
SO:0000485	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one DJ-gene, and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000485	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one DJ-gene, and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45434	\N	\N	sequence	0	SO	DJ_J_cluster	DJ_J_cluster
SO:0000938	SO:0000485	\N	"" []	SO:0000485	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one DJ-gene, and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490065	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	DJ_J_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000485	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one DJ-gene, and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072534	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	DJ_J_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000485	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one DJ-gene, and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903576	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	DJ_J_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000485	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one DJ-gene, and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928048	\N	\N	sequence	4	SO	specific_recombination_site	DJ_J_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000485	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one DJ-gene, and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001410	\N	\N	sequence	5	SO	sequence_rearrangement_feature	DJ_J_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000485	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one DJ-gene, and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4965968	\N	\N	sequence	6	SO	recombination_feature	DJ_J_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000485	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one DJ-gene, and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740911	\N	SOFA	sequence	7	SO	biological_region	DJ_J_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000485	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one DJ-gene, and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310863	SOFA	SOFA	sequence	8	SO	region	DJ_J_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000485	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one DJ-gene, and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699245	SOFA	SOFA	sequence	9	SO	sequence_feature	DJ_J_cluster
SO:0000486	\N	SOFA	"The sequence of the 5' exon preceding the start codon." [SO:ke]	SO:0000486	"The sequence of the 5' exon preceding the start codon." [SO:ke]	45435	\N	SOFA	sequence	0	SO	five_prime_coding_exon_noncoding_region	five_prime_coding_exon_noncoding_region
SO:0000200	SO:0000486	SOFA	"The 5' most coding exon." [SO:ke]	SO:0000486	"The sequence of the 5' exon preceding the start codon." [SO:ke]	490066	SOFA	SOFA	sequence	1	SO	five_prime_coding_exon	five_prime_coding_exon_noncoding_region
SO:0001214	SO:0000486	SOFA	"The maximal intersection of exon and UTR." [SO:ke]	SO:0000486	"The sequence of the 5' exon preceding the start codon." [SO:ke]	490067	SOFA	SOFA	sequence	1	SO	noncoding_region_of_exon	five_prime_coding_exon_noncoding_region
SO:0000195	SO:0000200	SOFA	"An exon whereby at least one base is part of a codon (here, 'codon' is inclusive of the stop_codon)." [SO:ke]	SO:0000486	"The sequence of the 5' exon preceding the start codon." [SO:ke]	1072535	SOFA	SOFA	sequence	2	SO	coding_exon	five_prime_coding_exon_noncoding_region
SO:0000852	SO:0001214	SOFA	"A region of an exon." [RSC:cb]	SO:0000486	"The sequence of the 5' exon preceding the start codon." [SO:ke]	1072536	SOFA	SOFA	sequence	2	SO	exon_region	five_prime_coding_exon_noncoding_region
SO:0000147	SO:0000195	SOFA	"A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing." [SO:ke]	SO:0000486	"The sequence of the 5' exon preceding the start codon." [SO:ke]	1903577	SOFA	SOFA	sequence	3	SO	exon	five_prime_coding_exon_noncoding_region
SO:0000147	SO:0000852	SOFA	"A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing." [SO:ke]	SO:0000486	"The sequence of the 5' exon preceding the start codon." [SO:ke]	1903578	SOFA	SOFA	sequence	3	SO	exon	five_prime_coding_exon_noncoding_region
SO:0000833	SO:0000852	SOFA	"A region of a transcript." [SO:ke]	SO:0000486	"The sequence of the 5' exon preceding the start codon." [SO:ke]	1903579	SOFA	SOFA	sequence	3	SO	transcript_region	five_prime_coding_exon_noncoding_region
SO:0000833	SO:0000147	SOFA	"A region of a transcript." [SO:ke]	SO:0000486	"The sequence of the 5' exon preceding the start codon." [SO:ke]	2928049	SOFA	SOFA	sequence	4	SO	transcript_region	five_prime_coding_exon_noncoding_region
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000486	"The sequence of the 5' exon preceding the start codon." [SO:ke]	4001411	SOFA	SOFA	sequence	5	SO	transcript	five_prime_coding_exon_noncoding_region
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000486	"The sequence of the 5' exon preceding the start codon." [SO:ke]	4001412	SOFA	SOFA	sequence	5	SO	biological_region	five_prime_coding_exon_noncoding_region
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000486	"The sequence of the 5' exon preceding the start codon." [SO:ke]	4385733	SOFA	SOFA	sequence	6	SO	gene_member_region	five_prime_coding_exon_noncoding_region
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000486	"The sequence of the 5' exon preceding the start codon." [SO:ke]	6146621	SOFA	SOFA	sequence	8	SO	region	five_prime_coding_exon_noncoding_region
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000486	"The sequence of the 5' exon preceding the start codon." [SO:ke]	5407395	SOFA	SOFA	sequence	7	SO	biological_region	five_prime_coding_exon_noncoding_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000486	"The sequence of the 5' exon preceding the start codon." [SO:ke]	6469733	SOFA	SOFA	sequence	9	SO	sequence_feature	five_prime_coding_exon_noncoding_region
SO:0000487	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000487	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45436	\N	\N	sequence	0	SO	VDJ_J_C_cluster	VDJ_J_C_cluster
SO:0000938	SO:0000487	\N	"" []	SO:0000487	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490068	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	VDJ_J_C_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000487	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072537	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	VDJ_J_C_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000487	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903580	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	VDJ_J_C_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000487	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928052	\N	\N	sequence	4	SO	specific_recombination_site	VDJ_J_C_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000487	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001415	\N	\N	sequence	5	SO	sequence_rearrangement_feature	VDJ_J_C_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000487	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4965971	\N	\N	sequence	6	SO	recombination_feature	VDJ_J_C_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000487	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740913	\N	SOFA	sequence	7	SO	biological_region	VDJ_J_C_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000487	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310864	SOFA	SOFA	sequence	8	SO	region	VDJ_J_C_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000487	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699246	SOFA	SOFA	sequence	9	SO	sequence_feature	VDJ_J_C_cluster
SO:0000488	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000488	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45437	\N	\N	sequence	0	SO	VDJ_J_cluster	VDJ_J_cluster
SO:0000938	SO:0000488	\N	"" []	SO:0000488	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490069	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	VDJ_J_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000488	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072538	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	VDJ_J_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000488	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903581	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	VDJ_J_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000488	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928053	\N	\N	sequence	4	SO	specific_recombination_site	VDJ_J_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000488	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001416	\N	\N	sequence	5	SO	sequence_rearrangement_feature	VDJ_J_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000488	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4965972	\N	\N	sequence	6	SO	recombination_feature	VDJ_J_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000488	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740914	\N	SOFA	sequence	7	SO	biological_region	VDJ_J_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000488	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310865	SOFA	SOFA	sequence	8	SO	region	VDJ_J_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000488	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699247	SOFA	SOFA	sequence	9	SO	sequence_feature	VDJ_J_cluster
SO:0000489	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000489	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45438	\N	\N	sequence	0	SO	VJ_C_cluster	VJ_C_cluster
SO:0000938	SO:0000489	\N	"" []	SO:0000489	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490070	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	VJ_C_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000489	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072539	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	VJ_C_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000489	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903582	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	VJ_C_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000489	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928054	\N	\N	sequence	4	SO	specific_recombination_site	VJ_C_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000489	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001417	\N	\N	sequence	5	SO	sequence_rearrangement_feature	VJ_C_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000489	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4965973	\N	\N	sequence	6	SO	recombination_feature	VJ_C_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000489	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740915	\N	SOFA	sequence	7	SO	biological_region	VJ_C_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000489	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310866	SOFA	SOFA	sequence	8	SO	region	VJ_C_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000489	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699248	SOFA	SOFA	sequence	9	SO	sequence_feature	VJ_C_cluster
SO:0000490	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000490	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45439	\N	\N	sequence	0	SO	VJ_J_C_cluster	VJ_J_C_cluster
SO:0000938	SO:0000490	\N	"" []	SO:0000490	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490071	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	VJ_J_C_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000490	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072540	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	VJ_J_C_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000490	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903583	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	VJ_J_C_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000490	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928055	\N	\N	sequence	4	SO	specific_recombination_site	VJ_J_C_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000490	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001418	\N	\N	sequence	5	SO	sequence_rearrangement_feature	VJ_J_C_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000490	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4965974	\N	\N	sequence	6	SO	recombination_feature	VJ_J_C_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000490	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740916	\N	SOFA	sequence	7	SO	biological_region	VJ_J_C_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000490	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310867	SOFA	SOFA	sequence	8	SO	region	VJ_J_C_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000490	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699249	SOFA	SOFA	sequence	9	SO	sequence_feature	VJ_J_C_cluster
SO:0000491	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000491	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45440	\N	\N	sequence	0	SO	VJ_J_cluster	VJ_J_cluster
SO:0000938	SO:0000491	\N	"" []	SO:0000491	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490072	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	VJ_J_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000491	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072541	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	VJ_J_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000491	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903584	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	VJ_J_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000491	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928056	\N	\N	sequence	4	SO	specific_recombination_site	VJ_J_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000491	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001419	\N	\N	sequence	5	SO	sequence_rearrangement_feature	VJ_J_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000491	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4965975	\N	\N	sequence	6	SO	recombination_feature	VJ_J_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000491	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740917	\N	SOFA	sequence	7	SO	biological_region	VJ_J_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000491	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310868	SOFA	SOFA	sequence	8	SO	region	VJ_J_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000491	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699250	SOFA	SOFA	sequence	9	SO	sequence_feature	VJ_J_cluster
SO:0000492	\N	\N	"" []	SO:0000492	"" []	45441	\N	\N	sequence	0	SO	D_gene_recombination_feature	D_gene_recombination_feature
SO:0000939	SO:0000492	\N	"" []	SO:0000492	"" []	490073	\N	\N	sequence	1	SO	vertebrate_immune_system_gene_recombination_signal_feature	D_gene_recombination_feature
SO:0000301	SO:0000939	\N	"" []	SO:0000492	"" []	1072542	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	D_gene_recombination_feature
SO:0000300	SO:0000301	\N	"" []	SO:0000492	"" []	1903585	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	D_gene_recombination_feature
SO:0000299	SO:0000300	\N	"" []	SO:0000492	"" []	2928057	\N	\N	sequence	4	SO	specific_recombination_site	D_gene_recombination_feature
SO:0000669	SO:0000299	\N	"" []	SO:0000492	"" []	4001420	\N	\N	sequence	5	SO	sequence_rearrangement_feature	D_gene_recombination_feature
SO:0000298	SO:0000669	\N	"" []	SO:0000492	"" []	4965976	\N	\N	sequence	6	SO	recombination_feature	D_gene_recombination_feature
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000492	"" []	5740918	\N	SOFA	sequence	7	SO	biological_region	D_gene_recombination_feature
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000492	"" []	6310869	SOFA	SOFA	sequence	8	SO	region	D_gene_recombination_feature
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000492	"" []	6699251	SOFA	SOFA	sequence	9	SO	sequence_feature	D_gene_recombination_feature
SO:0000493	\N	\N	"7 nucleotide recombination site like CACAGTG, part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000493	"7 nucleotide recombination site like CACAGTG, part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45442	\N	\N	sequence	0	SO	three_prime_D_heptamer	three_prime_D_heptamer
SO:0000561	SO:0000493	\N	"Seven nucleotide recombination site (e.g. CACAGTG), part of V-gene, D-gene or J-gene recombination feature of an immunoglobulin or T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000493	"7 nucleotide recombination site like CACAGTG, part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490074	\N	\N	sequence	1	SO	heptamer_of_recombination_feature_of_vertebrate_immune_system_gene	three_prime_D_heptamer
SO:0000570	SO:0000493	\N	"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 3' D-heptamer (SO:0000493), 3' D-spacer, and 3' D-nonamer (SO:0000494) in 3' of the D-region of a D-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000493	"7 nucleotide recombination site like CACAGTG, part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490075	\N	\N	sequence	1	SO	three_prime_D_recombination_signal_sequence	three_prime_D_heptamer
SO:0000939	SO:0000561	\N	"" []	SO:0000493	"7 nucleotide recombination site like CACAGTG, part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072543	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_signal_feature	three_prime_D_heptamer
SO:0000492	SO:0000570	\N	"" []	SO:0000493	"7 nucleotide recombination site like CACAGTG, part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072544	\N	\N	sequence	2	SO	D_gene_recombination_feature	three_prime_D_heptamer
SO:0000301	SO:0000939	\N	"" []	SO:0000493	"7 nucleotide recombination site like CACAGTG, part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928059	\N	\N	sequence	4	SO	vertebrate_immune_system_gene_recombination_feature	three_prime_D_heptamer
SO:0000939	SO:0000492	\N	"" []	SO:0000493	"7 nucleotide recombination site like CACAGTG, part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903587	\N	\N	sequence	3	SO	vertebrate_immune_system_gene_recombination_signal_feature	three_prime_D_heptamer
SO:0000300	SO:0000301	\N	"" []	SO:0000493	"7 nucleotide recombination site like CACAGTG, part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	3173879	\N	\N	sequence	5	SO	recombination_feature_of_rearranged_gene	three_prime_D_heptamer
SO:0000299	SO:0000300	\N	"" []	SO:0000493	"7 nucleotide recombination site like CACAGTG, part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4385735	\N	\N	sequence	6	SO	specific_recombination_site	three_prime_D_heptamer
SO:0000669	SO:0000299	\N	"" []	SO:0000493	"7 nucleotide recombination site like CACAGTG, part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5407397	\N	\N	sequence	7	SO	sequence_rearrangement_feature	three_prime_D_heptamer
SO:0000298	SO:0000669	\N	"" []	SO:0000493	"7 nucleotide recombination site like CACAGTG, part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6146622	\N	\N	sequence	8	SO	recombination_feature	three_prime_D_heptamer
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000493	"7 nucleotide recombination site like CACAGTG, part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6631378	\N	SOFA	sequence	9	SO	biological_region	three_prime_D_heptamer
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000493	"7 nucleotide recombination site like CACAGTG, part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6925079	SOFA	SOFA	sequence	10	SO	region	three_prime_D_heptamer
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000493	"7 nucleotide recombination site like CACAGTG, part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	7098877	SOFA	SOFA	sequence	11	SO	sequence_feature	three_prime_D_heptamer
SO:0000494	\N	\N	"A 9 nucleotide recombination site (e.g. ACAAAAACC), part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000494	"A 9 nucleotide recombination site (e.g. ACAAAAACC), part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45443	\N	\N	sequence	0	SO	three_prime_D_nonamer	three_prime_D_nonamer
SO:0000562	SO:0000494	\N	"" []	SO:0000494	"A 9 nucleotide recombination site (e.g. ACAAAAACC), part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490076	\N	\N	sequence	1	SO	nonamer_of_recombination_feature_of_vertebrate_immune_system_gene	three_prime_D_nonamer
SO:0000570	SO:0000494	\N	"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 3' D-heptamer (SO:0000493), 3' D-spacer, and 3' D-nonamer (SO:0000494) in 3' of the D-region of a D-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000494	"A 9 nucleotide recombination site (e.g. ACAAAAACC), part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490077	\N	\N	sequence	1	SO	three_prime_D_recombination_signal_sequence	three_prime_D_nonamer
SO:0000939	SO:0000562	\N	"" []	SO:0000494	"A 9 nucleotide recombination site (e.g. ACAAAAACC), part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072545	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_signal_feature	three_prime_D_nonamer
SO:0000492	SO:0000570	\N	"" []	SO:0000494	"A 9 nucleotide recombination site (e.g. ACAAAAACC), part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072546	\N	\N	sequence	2	SO	D_gene_recombination_feature	three_prime_D_nonamer
SO:0000301	SO:0000939	\N	"" []	SO:0000494	"A 9 nucleotide recombination site (e.g. ACAAAAACC), part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928061	\N	\N	sequence	4	SO	vertebrate_immune_system_gene_recombination_feature	three_prime_D_nonamer
SO:0000939	SO:0000492	\N	"" []	SO:0000494	"A 9 nucleotide recombination site (e.g. ACAAAAACC), part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903589	\N	\N	sequence	3	SO	vertebrate_immune_system_gene_recombination_signal_feature	three_prime_D_nonamer
SO:0000300	SO:0000301	\N	"" []	SO:0000494	"A 9 nucleotide recombination site (e.g. ACAAAAACC), part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	3173880	\N	\N	sequence	5	SO	recombination_feature_of_rearranged_gene	three_prime_D_nonamer
SO:0000299	SO:0000300	\N	"" []	SO:0000494	"A 9 nucleotide recombination site (e.g. ACAAAAACC), part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4385736	\N	\N	sequence	6	SO	specific_recombination_site	three_prime_D_nonamer
SO:0000669	SO:0000299	\N	"" []	SO:0000494	"A 9 nucleotide recombination site (e.g. ACAAAAACC), part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5407398	\N	\N	sequence	7	SO	sequence_rearrangement_feature	three_prime_D_nonamer
SO:0000298	SO:0000669	\N	"" []	SO:0000494	"A 9 nucleotide recombination site (e.g. ACAAAAACC), part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6146623	\N	\N	sequence	8	SO	recombination_feature	three_prime_D_nonamer
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000494	"A 9 nucleotide recombination site (e.g. ACAAAAACC), part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6631379	\N	SOFA	sequence	9	SO	biological_region	three_prime_D_nonamer
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000494	"A 9 nucleotide recombination site (e.g. ACAAAAACC), part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6925080	SOFA	SOFA	sequence	10	SO	region	three_prime_D_nonamer
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000494	"A 9 nucleotide recombination site (e.g. ACAAAAACC), part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	7098878	SOFA	SOFA	sequence	11	SO	sequence_feature	three_prime_D_nonamer
SO:0000495	\N	\N	"A 12 or 23 nucleotide spacer between the 3'D-HEPTAMER and 3'D-NONAMER of a 3'D-RS." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000495	"A 12 or 23 nucleotide spacer between the 3'D-HEPTAMER and 3'D-NONAMER of a 3'D-RS." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45444	\N	\N	sequence	0	SO	three_prime_D_spacer	three_prime_D_spacer
SO:0000563	SO:0000495	\N	"" []	SO:0000495	"A 12 or 23 nucleotide spacer between the 3'D-HEPTAMER and 3'D-NONAMER of a 3'D-RS." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490078	\N	\N	sequence	1	SO	vertebrate_immune_system_gene_recombination_spacer	three_prime_D_spacer
SO:0000570	SO:0000495	\N	"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 3' D-heptamer (SO:0000493), 3' D-spacer, and 3' D-nonamer (SO:0000494) in 3' of the D-region of a D-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000495	"A 12 or 23 nucleotide spacer between the 3'D-HEPTAMER and 3'D-NONAMER of a 3'D-RS." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490079	\N	\N	sequence	1	SO	three_prime_D_recombination_signal_sequence	three_prime_D_spacer
SO:0000301	SO:0000563	\N	"" []	SO:0000495	"A 12 or 23 nucleotide spacer between the 3'D-HEPTAMER and 3'D-NONAMER of a 3'D-RS." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072547	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	three_prime_D_spacer
SO:0000492	SO:0000570	\N	"" []	SO:0000495	"A 12 or 23 nucleotide spacer between the 3'D-HEPTAMER and 3'D-NONAMER of a 3'D-RS." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072548	\N	\N	sequence	2	SO	D_gene_recombination_feature	three_prime_D_spacer
SO:0000300	SO:0000301	\N	"" []	SO:0000495	"A 12 or 23 nucleotide spacer between the 3'D-HEPTAMER and 3'D-NONAMER of a 3'D-RS." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001424	\N	\N	sequence	5	SO	recombination_feature_of_rearranged_gene	three_prime_D_spacer
SO:0000939	SO:0000492	\N	"" []	SO:0000495	"A 12 or 23 nucleotide spacer between the 3'D-HEPTAMER and 3'D-NONAMER of a 3'D-RS." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903591	\N	\N	sequence	3	SO	vertebrate_immune_system_gene_recombination_signal_feature	three_prime_D_spacer
SO:0000299	SO:0000300	\N	"" []	SO:0000495	"A 12 or 23 nucleotide spacer between the 3'D-HEPTAMER and 3'D-NONAMER of a 3'D-RS." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4132294	\N	\N	sequence	6	SO	specific_recombination_site	three_prime_D_spacer
SO:0000301	SO:0000939	\N	"" []	SO:0000495	"A 12 or 23 nucleotide spacer between the 3'D-HEPTAMER and 3'D-NONAMER of a 3'D-RS." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928063	\N	\N	sequence	4	SO	vertebrate_immune_system_gene_recombination_feature	three_prime_D_spacer
SO:0000669	SO:0000299	\N	"" []	SO:0000495	"A 12 or 23 nucleotide spacer between the 3'D-HEPTAMER and 3'D-NONAMER of a 3'D-RS." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5180681	\N	\N	sequence	7	SO	sequence_rearrangement_feature	three_prime_D_spacer
SO:0000298	SO:0000669	\N	"" []	SO:0000495	"A 12 or 23 nucleotide spacer between the 3'D-HEPTAMER and 3'D-NONAMER of a 3'D-RS." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5996384	\N	\N	sequence	8	SO	recombination_feature	three_prime_D_spacer
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000495	"A 12 or 23 nucleotide spacer between the 3'D-HEPTAMER and 3'D-NONAMER of a 3'D-RS." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6550252	\N	SOFA	sequence	9	SO	biological_region	three_prime_D_spacer
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000495	"A 12 or 23 nucleotide spacer between the 3'D-HEPTAMER and 3'D-NONAMER of a 3'D-RS." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6888929	SOFA	SOFA	sequence	10	SO	region	three_prime_D_spacer
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000495	"A 12 or 23 nucleotide spacer between the 3'D-HEPTAMER and 3'D-NONAMER of a 3'D-RS." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	7085871	SOFA	SOFA	sequence	11	SO	sequence_feature	three_prime_D_spacer
SO:0000496	\N	\N	"7 nucleotide recombination site (e.g. CACTGTG), part of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000496	"7 nucleotide recombination site (e.g. CACTGTG), part of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45445	\N	\N	sequence	0	SO	five_prime_D_heptamer	five_prime_D_heptamer
SO:0000556	SO:0000496	\N	"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 5' D-nonamer (SO:0000497), 5' D-spacer (SO:0000498), and 5' D-heptamer (SO:0000396) in 5' of the D-region of a D-gene, or in 5' of the D-region of DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000496	"7 nucleotide recombination site (e.g. CACTGTG), part of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490080	\N	\N	sequence	1	SO	five_prime_D_recombination_signal_sequence	five_prime_D_heptamer
SO:0000561	SO:0000496	\N	"Seven nucleotide recombination site (e.g. CACAGTG), part of V-gene, D-gene or J-gene recombination feature of an immunoglobulin or T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000496	"7 nucleotide recombination site (e.g. CACTGTG), part of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490081	\N	\N	sequence	1	SO	heptamer_of_recombination_feature_of_vertebrate_immune_system_gene	five_prime_D_heptamer
SO:0000492	SO:0000556	\N	"" []	SO:0000496	"7 nucleotide recombination site (e.g. CACTGTG), part of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072549	\N	\N	sequence	2	SO	D_gene_recombination_feature	five_prime_D_heptamer
SO:0000939	SO:0000561	\N	"" []	SO:0000496	"7 nucleotide recombination site (e.g. CACTGTG), part of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072550	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_signal_feature	five_prime_D_heptamer
SO:0000939	SO:0000492	\N	"" []	SO:0000496	"7 nucleotide recombination site (e.g. CACTGTG), part of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903592	\N	\N	sequence	3	SO	vertebrate_immune_system_gene_recombination_signal_feature	five_prime_D_heptamer
SO:0000301	SO:0000939	\N	"" []	SO:0000496	"7 nucleotide recombination site (e.g. CACTGTG), part of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928064	\N	\N	sequence	4	SO	vertebrate_immune_system_gene_recombination_feature	five_prime_D_heptamer
SO:0000300	SO:0000301	\N	"" []	SO:0000496	"7 nucleotide recombination site (e.g. CACTGTG), part of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	3173881	\N	\N	sequence	5	SO	recombination_feature_of_rearranged_gene	five_prime_D_heptamer
SO:0000299	SO:0000300	\N	"" []	SO:0000496	"7 nucleotide recombination site (e.g. CACTGTG), part of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4385737	\N	\N	sequence	6	SO	specific_recombination_site	five_prime_D_heptamer
SO:0000669	SO:0000299	\N	"" []	SO:0000496	"7 nucleotide recombination site (e.g. CACTGTG), part of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5407399	\N	\N	sequence	7	SO	sequence_rearrangement_feature	five_prime_D_heptamer
SO:0000298	SO:0000669	\N	"" []	SO:0000496	"7 nucleotide recombination site (e.g. CACTGTG), part of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6146624	\N	\N	sequence	8	SO	recombination_feature	five_prime_D_heptamer
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000496	"7 nucleotide recombination site (e.g. CACTGTG), part of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6631380	\N	SOFA	sequence	9	SO	biological_region	five_prime_D_heptamer
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000496	"7 nucleotide recombination site (e.g. CACTGTG), part of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6925081	SOFA	SOFA	sequence	10	SO	region	five_prime_D_heptamer
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000496	"7 nucleotide recombination site (e.g. CACTGTG), part of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	7098879	SOFA	SOFA	sequence	11	SO	sequence_feature	five_prime_D_heptamer
SO:0000497	\N	\N	"9 nucleotide recombination site (e.g. GGTTTTTGT), part of a five_prime_D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000497	"9 nucleotide recombination site (e.g. GGTTTTTGT), part of a five_prime_D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45446	\N	\N	sequence	0	SO	five_prime_D_nonamer	five_prime_D_nonamer
SO:0000556	SO:0000497	\N	"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 5' D-nonamer (SO:0000497), 5' D-spacer (SO:0000498), and 5' D-heptamer (SO:0000396) in 5' of the D-region of a D-gene, or in 5' of the D-region of DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000497	"9 nucleotide recombination site (e.g. GGTTTTTGT), part of a five_prime_D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490082	\N	\N	sequence	1	SO	five_prime_D_recombination_signal_sequence	five_prime_D_nonamer
SO:0000562	SO:0000497	\N	"" []	SO:0000497	"9 nucleotide recombination site (e.g. GGTTTTTGT), part of a five_prime_D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490083	\N	\N	sequence	1	SO	nonamer_of_recombination_feature_of_vertebrate_immune_system_gene	five_prime_D_nonamer
SO:0000492	SO:0000556	\N	"" []	SO:0000497	"9 nucleotide recombination site (e.g. GGTTTTTGT), part of a five_prime_D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072551	\N	\N	sequence	2	SO	D_gene_recombination_feature	five_prime_D_nonamer
SO:0000939	SO:0000562	\N	"" []	SO:0000497	"9 nucleotide recombination site (e.g. GGTTTTTGT), part of a five_prime_D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072552	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_signal_feature	five_prime_D_nonamer
SO:0000939	SO:0000492	\N	"" []	SO:0000497	"9 nucleotide recombination site (e.g. GGTTTTTGT), part of a five_prime_D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903594	\N	\N	sequence	3	SO	vertebrate_immune_system_gene_recombination_signal_feature	five_prime_D_nonamer
SO:0000301	SO:0000939	\N	"" []	SO:0000497	"9 nucleotide recombination site (e.g. GGTTTTTGT), part of a five_prime_D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928066	\N	\N	sequence	4	SO	vertebrate_immune_system_gene_recombination_feature	five_prime_D_nonamer
SO:0000300	SO:0000301	\N	"" []	SO:0000497	"9 nucleotide recombination site (e.g. GGTTTTTGT), part of a five_prime_D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	3173882	\N	\N	sequence	5	SO	recombination_feature_of_rearranged_gene	five_prime_D_nonamer
SO:0000299	SO:0000300	\N	"" []	SO:0000497	"9 nucleotide recombination site (e.g. GGTTTTTGT), part of a five_prime_D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4385738	\N	\N	sequence	6	SO	specific_recombination_site	five_prime_D_nonamer
SO:0000669	SO:0000299	\N	"" []	SO:0000497	"9 nucleotide recombination site (e.g. GGTTTTTGT), part of a five_prime_D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5407400	\N	\N	sequence	7	SO	sequence_rearrangement_feature	five_prime_D_nonamer
SO:0000298	SO:0000669	\N	"" []	SO:0000497	"9 nucleotide recombination site (e.g. GGTTTTTGT), part of a five_prime_D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6146625	\N	\N	sequence	8	SO	recombination_feature	five_prime_D_nonamer
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000497	"9 nucleotide recombination site (e.g. GGTTTTTGT), part of a five_prime_D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6631381	\N	SOFA	sequence	9	SO	biological_region	five_prime_D_nonamer
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000497	"9 nucleotide recombination site (e.g. GGTTTTTGT), part of a five_prime_D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6925082	SOFA	SOFA	sequence	10	SO	region	five_prime_D_nonamer
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000497	"9 nucleotide recombination site (e.g. GGTTTTTGT), part of a five_prime_D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	7098880	SOFA	SOFA	sequence	11	SO	sequence_feature	five_prime_D_nonamer
SO:0000498	\N	\N	"12 or 23 nucleotide spacer between the 5' D-heptamer (SO:0000496) and 5' D-nonamer (SO:0000497) of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000498	"12 or 23 nucleotide spacer between the 5' D-heptamer (SO:0000496) and 5' D-nonamer (SO:0000497) of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45447	\N	\N	sequence	0	SO	five_prime_D_spacer	five_prime_D_spacer
SO:0000556	SO:0000498	\N	"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 5' D-nonamer (SO:0000497), 5' D-spacer (SO:0000498), and 5' D-heptamer (SO:0000396) in 5' of the D-region of a D-gene, or in 5' of the D-region of DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000498	"12 or 23 nucleotide spacer between the 5' D-heptamer (SO:0000496) and 5' D-nonamer (SO:0000497) of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490084	\N	\N	sequence	1	SO	five_prime_D_recombination_signal_sequence	five_prime_D_spacer
SO:0000563	SO:0000498	\N	"" []	SO:0000498	"12 or 23 nucleotide spacer between the 5' D-heptamer (SO:0000496) and 5' D-nonamer (SO:0000497) of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490085	\N	\N	sequence	1	SO	vertebrate_immune_system_gene_recombination_spacer	five_prime_D_spacer
SO:0000492	SO:0000556	\N	"" []	SO:0000498	"12 or 23 nucleotide spacer between the 5' D-heptamer (SO:0000496) and 5' D-nonamer (SO:0000497) of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072553	\N	\N	sequence	2	SO	D_gene_recombination_feature	five_prime_D_spacer
SO:0000301	SO:0000563	\N	"" []	SO:0000498	"12 or 23 nucleotide spacer between the 5' D-heptamer (SO:0000496) and 5' D-nonamer (SO:0000497) of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072554	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	five_prime_D_spacer
SO:0000939	SO:0000492	\N	"" []	SO:0000498	"12 or 23 nucleotide spacer between the 5' D-heptamer (SO:0000496) and 5' D-nonamer (SO:0000497) of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903596	\N	\N	sequence	3	SO	vertebrate_immune_system_gene_recombination_signal_feature	five_prime_D_spacer
SO:0000300	SO:0000301	\N	"" []	SO:0000498	"12 or 23 nucleotide spacer between the 5' D-heptamer (SO:0000496) and 5' D-nonamer (SO:0000497) of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001427	\N	\N	sequence	5	SO	recombination_feature_of_rearranged_gene	five_prime_D_spacer
SO:0000301	SO:0000939	\N	"" []	SO:0000498	"12 or 23 nucleotide spacer between the 5' D-heptamer (SO:0000496) and 5' D-nonamer (SO:0000497) of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928068	\N	\N	sequence	4	SO	vertebrate_immune_system_gene_recombination_feature	five_prime_D_spacer
SO:0000299	SO:0000300	\N	"" []	SO:0000498	"12 or 23 nucleotide spacer between the 5' D-heptamer (SO:0000496) and 5' D-nonamer (SO:0000497) of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4132295	\N	\N	sequence	6	SO	specific_recombination_site	five_prime_D_spacer
SO:0000669	SO:0000299	\N	"" []	SO:0000498	"12 or 23 nucleotide spacer between the 5' D-heptamer (SO:0000496) and 5' D-nonamer (SO:0000497) of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5180682	\N	\N	sequence	7	SO	sequence_rearrangement_feature	five_prime_D_spacer
SO:0000298	SO:0000669	\N	"" []	SO:0000498	"12 or 23 nucleotide spacer between the 5' D-heptamer (SO:0000496) and 5' D-nonamer (SO:0000497) of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5996385	\N	\N	sequence	8	SO	recombination_feature	five_prime_D_spacer
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000498	"12 or 23 nucleotide spacer between the 5' D-heptamer (SO:0000496) and 5' D-nonamer (SO:0000497) of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6550253	\N	SOFA	sequence	9	SO	biological_region	five_prime_D_spacer
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000498	"12 or 23 nucleotide spacer between the 5' D-heptamer (SO:0000496) and 5' D-nonamer (SO:0000497) of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6888930	SOFA	SOFA	sequence	10	SO	region	five_prime_D_spacer
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000498	"12 or 23 nucleotide spacer between the 5' D-heptamer (SO:0000496) and 5' D-nonamer (SO:0000497) of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	7085872	SOFA	SOFA	sequence	11	SO	sequence_feature	five_prime_D_spacer
SO:0000499	\N	SOFA	"A continuous piece of sequence similar to the 'virtual contig' concept of the Ensembl database." [SO:ke]	SO:0000499	"A continuous piece of sequence similar to the 'virtual contig' concept of the Ensembl database." [SO:ke]	45448	\N	SOFA	sequence	0	SO	virtual_sequence	virtual_sequence
SO:0000353	SO:0000499	SOFA	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0000499	"A continuous piece of sequence similar to the 'virtual contig' concept of the Ensembl database." [SO:ke]	490086	SOFA	SOFA	sequence	1	SO	sequence_assembly	virtual_sequence
SO:0001248	SO:0000353	SOFA	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0000499	"A continuous piece of sequence similar to the 'virtual contig' concept of the Ensembl database." [SO:ke]	1072555	SOFA	SOFA	sequence	2	SO	assembly	virtual_sequence
SO:0001410	SO:0001248	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000499	"A continuous piece of sequence similar to the 'virtual contig' concept of the Ensembl database." [SO:ke]	1903598	SOFA	SOFA	sequence	3	SO	experimental_feature	virtual_sequence
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000499	"A continuous piece of sequence similar to the 'virtual contig' concept of the Ensembl database." [SO:ke]	2928070	SOFA	SOFA	sequence	4	SO	region	virtual_sequence
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000499	"A continuous piece of sequence similar to the 'virtual contig' concept of the Ensembl database." [SO:ke]	4001429	SOFA	SOFA	sequence	5	SO	sequence_feature	virtual_sequence
SO:0000500	\N	\N	"A type of non-canonical base-pairing. This is less energetically favourable than watson crick base pairing. Hoogsteen GC base pairs only have two hydrogen bonds." [PMID:12177293]	SO:0000500	"A type of non-canonical base-pairing. This is less energetically favourable than watson crick base pairing. Hoogsteen GC base pairs only have two hydrogen bonds." [PMID:12177293]	45449	\N	\N	sequence	0	SO	Hoogsteen_base_pair	Hoogsteen_base_pair
SO:0000028	SO:0000500	\N	"" []	SO:0000500	"A type of non-canonical base-pairing. This is less energetically favourable than watson crick base pairing. Hoogsteen GC base pairs only have two hydrogen bonds." [PMID:12177293]	490087	\N	\N	sequence	1	SO	base_pair	Hoogsteen_base_pair
SO:0000002	SO:0000028	\N	"A folded sequence." [SO:ke]	SO:0000500	"A type of non-canonical base-pairing. This is less energetically favourable than watson crick base pairing. Hoogsteen GC base pairs only have two hydrogen bonds." [PMID:12177293]	1072556	\N	\N	sequence	2	SO	sequence_secondary_structure	Hoogsteen_base_pair
SO:0001411	SO:0000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000500	"A type of non-canonical base-pairing. This is less energetically favourable than watson crick base pairing. Hoogsteen GC base pairs only have two hydrogen bonds." [PMID:12177293]	1903599	\N	SOFA	sequence	3	SO	biological_region	Hoogsteen_base_pair
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000500	"A type of non-canonical base-pairing. This is less energetically favourable than watson crick base pairing. Hoogsteen GC base pairs only have two hydrogen bonds." [PMID:12177293]	2928071	SOFA	SOFA	sequence	4	SO	region	Hoogsteen_base_pair
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000500	"A type of non-canonical base-pairing. This is less energetically favourable than watson crick base pairing. Hoogsteen GC base pairs only have two hydrogen bonds." [PMID:12177293]	4001430	SOFA	SOFA	sequence	5	SO	sequence_feature	Hoogsteen_base_pair
SO:0000501	\N	\N	"A type of non-canonical base-pairing." [SO:ke]	SO:0000501	"A type of non-canonical base-pairing." [SO:ke]	45450	\N	\N	sequence	0	SO	reverse_Hoogsteen_base_pair	reverse_Hoogsteen_base_pair
SO:0000028	SO:0000501	\N	"" []	SO:0000501	"A type of non-canonical base-pairing." [SO:ke]	490088	\N	\N	sequence	1	SO	base_pair	reverse_Hoogsteen_base_pair
SO:0000002	SO:0000028	\N	"A folded sequence." [SO:ke]	SO:0000501	"A type of non-canonical base-pairing." [SO:ke]	1072557	\N	\N	sequence	2	SO	sequence_secondary_structure	reverse_Hoogsteen_base_pair
SO:0001411	SO:0000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000501	"A type of non-canonical base-pairing." [SO:ke]	1903600	\N	SOFA	sequence	3	SO	biological_region	reverse_Hoogsteen_base_pair
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000501	"A type of non-canonical base-pairing." [SO:ke]	2928072	SOFA	SOFA	sequence	4	SO	region	reverse_Hoogsteen_base_pair
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000501	"A type of non-canonical base-pairing." [SO:ke]	4001431	SOFA	SOFA	sequence	5	SO	sequence_feature	reverse_Hoogsteen_base_pair
SO:0000504	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000504	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45451	\N	\N	sequence	0	SO	D_DJ_C_cluster	D_DJ_C_cluster
SO:0000938	SO:0000504	\N	"" []	SO:0000504	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490089	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	D_DJ_C_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000504	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072558	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	D_DJ_C_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000504	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903601	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	D_DJ_C_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000504	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928073	\N	\N	sequence	4	SO	specific_recombination_site	D_DJ_C_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000504	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001432	\N	\N	sequence	5	SO	sequence_rearrangement_feature	D_DJ_C_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000504	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4965983	\N	\N	sequence	6	SO	recombination_feature	D_DJ_C_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000504	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740925	\N	SOFA	sequence	7	SO	biological_region	D_DJ_C_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000504	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310876	SOFA	SOFA	sequence	8	SO	region	D_DJ_C_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000504	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699258	SOFA	SOFA	sequence	9	SO	sequence_feature	D_DJ_C_cluster
SO:0000505	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene and one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000505	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene and one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45452	\N	\N	sequence	0	SO	D_DJ_cluster	D_DJ_cluster
SO:0000938	SO:0000505	\N	"" []	SO:0000505	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene and one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490090	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	D_DJ_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000505	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene and one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072559	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	D_DJ_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000505	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene and one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903602	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	D_DJ_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000505	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene and one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928074	\N	\N	sequence	4	SO	specific_recombination_site	D_DJ_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000505	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene and one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001433	\N	\N	sequence	5	SO	sequence_rearrangement_feature	D_DJ_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000505	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene and one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4965984	\N	\N	sequence	6	SO	recombination_feature	D_DJ_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000505	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene and one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740926	\N	SOFA	sequence	7	SO	biological_region	D_DJ_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000505	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene and one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310877	SOFA	SOFA	sequence	8	SO	region	D_DJ_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000505	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene and one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699259	SOFA	SOFA	sequence	9	SO	sequence_feature	D_DJ_cluster
SO:0000506	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000506	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45453	\N	\N	sequence	0	SO	D_DJ_J_C_cluster	D_DJ_J_C_cluster
SO:0000938	SO:0000506	\N	"" []	SO:0000506	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490091	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	D_DJ_J_C_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000506	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072560	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	D_DJ_J_C_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000506	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903603	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	D_DJ_J_C_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000506	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928075	\N	\N	sequence	4	SO	specific_recombination_site	D_DJ_J_C_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000506	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001434	\N	\N	sequence	5	SO	sequence_rearrangement_feature	D_DJ_J_C_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000506	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4965985	\N	\N	sequence	6	SO	recombination_feature	D_DJ_J_C_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000506	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740927	\N	SOFA	sequence	7	SO	biological_region	D_DJ_J_C_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000506	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310878	SOFA	SOFA	sequence	8	SO	region	D_DJ_J_C_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000506	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699260	SOFA	SOFA	sequence	9	SO	sequence_feature	D_DJ_J_C_cluster
SO:0000507	\N	\N	"A non functional descendant of an exon, part of a pseudogene." [SO:ke]	SO:0000507	"A non functional descendant of an exon, part of a pseudogene." [SO:ke]	45454	\N	\N	sequence	0	SO	pseudogenic_exon	pseudogenic_exon
SO:0000462	SO:0000507	\N	"A non-functional descendant of a functional entity." [SO:cjm]	SO:0000507	"A non functional descendant of an exon, part of a pseudogene." [SO:ke]	490092	\N	SOFA	sequence	1	SO	pseudogenic_region	pseudogenic_exon
SO:0000516	SO:0000507	\N	"A non functional descendant of a transcript, part of a pseudogene." [SO:ke]	SO:0000507	"A non functional descendant of an exon, part of a pseudogene." [SO:ke]	490093	\N	\N	sequence	1	SO	pseudogenic_transcript	pseudogenic_exon
SO:0001411	SO:0000462	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000507	"A non functional descendant of an exon, part of a pseudogene." [SO:ke]	1903606	SOFA	SOFA	sequence	3	SO	biological_region	pseudogenic_exon
SO:0000336	SO:0000516	\N	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	SO:0000507	"A non functional descendant of an exon, part of a pseudogene." [SO:ke]	1072562	\N	SOFA	sequence	2	SO	pseudogene	pseudogenic_exon
SO:0000462	SO:0000516	\N	"A non-functional descendant of a functional entity." [SO:cjm]	SO:0000507	"A non functional descendant of an exon, part of a pseudogene." [SO:ke]	1072563	\N	SOFA	sequence	2	SO	pseudogenic_region	pseudogenic_exon
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000507	"A non functional descendant of an exon, part of a pseudogene." [SO:ke]	2018220	SOFA	SOFA	sequence	4	SO	region	pseudogenic_exon
SO:0001411	SO:0000336	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000507	"A non functional descendant of an exon, part of a pseudogene." [SO:ke]	1903605	SOFA	SOFA	sequence	3	SO	biological_region	pseudogenic_exon
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000507	"A non functional descendant of an exon, part of a pseudogene." [SO:ke]	3173883	SOFA	SOFA	sequence	5	SO	sequence_feature	pseudogenic_exon
SO:0000508	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene, and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000508	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene, and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45455	\N	\N	sequence	0	SO	D_DJ_J_cluster	D_DJ_J_cluster
SO:0000938	SO:0000508	\N	"" []	SO:0000508	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene, and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490094	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	D_DJ_J_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000508	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene, and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072564	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	D_DJ_J_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000508	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene, and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903607	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	D_DJ_J_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000508	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene, and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928077	\N	\N	sequence	4	SO	specific_recombination_site	D_DJ_J_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000508	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene, and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001435	\N	\N	sequence	5	SO	sequence_rearrangement_feature	D_DJ_J_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000508	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene, and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4965986	\N	\N	sequence	6	SO	recombination_feature	D_DJ_J_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000508	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene, and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740928	\N	SOFA	sequence	7	SO	biological_region	D_DJ_J_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000508	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene, and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310879	SOFA	SOFA	sequence	8	SO	region	D_DJ_J_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000508	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene, and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699261	SOFA	SOFA	sequence	9	SO	sequence_feature	D_DJ_J_cluster
SO:0000509	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one D-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000509	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one D-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45456	\N	\N	sequence	0	SO	D_J_C_cluster	D_J_C_cluster
SO:0000482	SO:0000509	\N	"" []	SO:0000509	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one D-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490095	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_gene_cluster	D_J_C_cluster
SO:0000301	SO:0000482	\N	"" []	SO:0000509	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one D-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072565	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	D_J_C_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000509	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one D-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903608	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	D_J_C_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000509	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one D-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928078	\N	\N	sequence	4	SO	specific_recombination_site	D_J_C_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000509	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one D-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001436	\N	\N	sequence	5	SO	sequence_rearrangement_feature	D_J_C_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000509	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one D-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4965987	\N	\N	sequence	6	SO	recombination_feature	D_J_C_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000509	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one D-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740929	\N	SOFA	sequence	7	SO	biological_region	D_J_C_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000509	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one D-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310880	SOFA	SOFA	sequence	8	SO	region	D_J_C_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000509	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one D-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699262	SOFA	SOFA	sequence	9	SO	sequence_feature	D_J_C_cluster
SO:0000510	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in partially rearranged genomic DNA including L-part1, V-intron and V-D-exon, with the 5' UTR (SO:0000204) and 3' UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000510	"Genomic DNA of immunoglobulin/T-cell receptor gene in partially rearranged genomic DNA including L-part1, V-intron and V-D-exon, with the 5' UTR (SO:0000204) and 3' UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45457	\N	\N	sequence	0	SO	VD_gene_segment	VD_gene_segment
SO:0000936	SO:0000510	\N	"" []	SO:0000510	"Genomic DNA of immunoglobulin/T-cell receptor gene in partially rearranged genomic DNA including L-part1, V-intron and V-D-exon, with the 5' UTR (SO:0000204) and 3' UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490096	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment	VD_gene_segment
SO:0000301	SO:0000936	\N	"" []	SO:0000510	"Genomic DNA of immunoglobulin/T-cell receptor gene in partially rearranged genomic DNA including L-part1, V-intron and V-D-exon, with the 5' UTR (SO:0000204) and 3' UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072566	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	VD_gene_segment
SO:0000300	SO:0000301	\N	"" []	SO:0000510	"Genomic DNA of immunoglobulin/T-cell receptor gene in partially rearranged genomic DNA including L-part1, V-intron and V-D-exon, with the 5' UTR (SO:0000204) and 3' UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903609	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	VD_gene_segment
SO:0000299	SO:0000300	\N	"" []	SO:0000510	"Genomic DNA of immunoglobulin/T-cell receptor gene in partially rearranged genomic DNA including L-part1, V-intron and V-D-exon, with the 5' UTR (SO:0000204) and 3' UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928079	\N	\N	sequence	4	SO	specific_recombination_site	VD_gene_segment
SO:0000669	SO:0000299	\N	"" []	SO:0000510	"Genomic DNA of immunoglobulin/T-cell receptor gene in partially rearranged genomic DNA including L-part1, V-intron and V-D-exon, with the 5' UTR (SO:0000204) and 3' UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001437	\N	\N	sequence	5	SO	sequence_rearrangement_feature	VD_gene_segment
SO:0000298	SO:0000669	\N	"" []	SO:0000510	"Genomic DNA of immunoglobulin/T-cell receptor gene in partially rearranged genomic DNA including L-part1, V-intron and V-D-exon, with the 5' UTR (SO:0000204) and 3' UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4965988	\N	\N	sequence	6	SO	recombination_feature	VD_gene_segment
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000510	"Genomic DNA of immunoglobulin/T-cell receptor gene in partially rearranged genomic DNA including L-part1, V-intron and V-D-exon, with the 5' UTR (SO:0000204) and 3' UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740930	\N	SOFA	sequence	7	SO	biological_region	VD_gene_segment
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000510	"Genomic DNA of immunoglobulin/T-cell receptor gene in partially rearranged genomic DNA including L-part1, V-intron and V-D-exon, with the 5' UTR (SO:0000204) and 3' UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310881	SOFA	SOFA	sequence	8	SO	region	VD_gene_segment
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000510	"Genomic DNA of immunoglobulin/T-cell receptor gene in partially rearranged genomic DNA including L-part1, V-intron and V-D-exon, with the 5' UTR (SO:0000204) and 3' UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699263	SOFA	SOFA	sequence	9	SO	sequence_feature	VD_gene_segment
SO:0000511	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000511	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45458	\N	\N	sequence	0	SO	J_C_cluster	J_C_cluster
SO:0000482	SO:0000511	\N	"" []	SO:0000511	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490097	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_gene_cluster	J_C_cluster
SO:0000301	SO:0000482	\N	"" []	SO:0000511	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072567	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	J_C_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000511	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903610	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	J_C_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000511	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928080	\N	\N	sequence	4	SO	specific_recombination_site	J_C_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000511	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001438	\N	\N	sequence	5	SO	sequence_rearrangement_feature	J_C_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000511	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4965989	\N	\N	sequence	6	SO	recombination_feature	J_C_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000511	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740931	\N	SOFA	sequence	7	SO	biological_region	J_C_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000511	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310882	SOFA	SOFA	sequence	8	SO	region	J_C_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000511	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699264	SOFA	SOFA	sequence	9	SO	sequence_feature	J_C_cluster
SO:0000512	\N	\N	"A chromosomal deletion whereby a chromosome generated by recombination between two inversions; has a deficiency at one end and presumed to have a deficiency or duplication at the other end of the inversion." [FB:km]	SO:0000512	"A chromosomal deletion whereby a chromosome generated by recombination between two inversions; has a deficiency at one end and presumed to have a deficiency or duplication at the other end of the inversion." [FB:km]	45459	\N	\N	sequence	0	SO	inversion_derived_deficiency_plus_aneuploid	inversion_derived_deficiency_plus_aneuploid
SO:1000029	SO:0000512	\N	"An incomplete chromosome." [SO:ke]	SO:0000512	"A chromosomal deletion whereby a chromosome generated by recombination between two inversions; has a deficiency at one end and presumed to have a deficiency or duplication at the other end of the inversion." [FB:km]	490098	\N	\N	sequence	1	SO	chromosomal_deletion	inversion_derived_deficiency_plus_aneuploid
SO:1000028	SO:1000029	\N	"A chromosomal structure variation within a single chromosome." [SO:ke]	SO:0000512	"A chromosomal deletion whereby a chromosome generated by recombination between two inversions; has a deficiency at one end and presumed to have a deficiency or duplication at the other end of the inversion." [FB:km]	1072568	\N	\N	sequence	2	SO	intrachromosomal_mutation	inversion_derived_deficiency_plus_aneuploid
SO:1000183	SO:1000028	\N	"" []	SO:0000512	"A chromosomal deletion whereby a chromosome generated by recombination between two inversions; has a deficiency at one end and presumed to have a deficiency or duplication at the other end of the inversion." [FB:km]	1903611	\N	\N	sequence	3	SO	chromosome_structure_variation	inversion_derived_deficiency_plus_aneuploid
SO:0000240	SO:1000183	\N	"" []	SO:0000512	"A chromosomal deletion whereby a chromosome generated by recombination between two inversions; has a deficiency at one end and presumed to have a deficiency or duplication at the other end of the inversion." [FB:km]	2928081	\N	\N	sequence	4	SO	chromosome_variation	inversion_derived_deficiency_plus_aneuploid
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0000512	"A chromosomal deletion whereby a chromosome generated by recombination between two inversions; has a deficiency at one end and presumed to have a deficiency or duplication at the other end of the inversion." [FB:km]	4001439	\N	\N	sequence	5	SO	variant_collection	inversion_derived_deficiency_plus_aneuploid
SO:0001524	SO:0000240	\N	"" []	SO:0000512	"A chromosomal deletion whereby a chromosome generated by recombination between two inversions; has a deficiency at one end and presumed to have a deficiency or duplication at the other end of the inversion." [FB:km]	4001440	\N	\N	sequence	5	SO	chromosomally_aberrant_genome	inversion_derived_deficiency_plus_aneuploid
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000512	"A chromosomal deletion whereby a chromosome generated by recombination between two inversions; has a deficiency at one end and presumed to have a deficiency or duplication at the other end of the inversion." [FB:km]	4965990	\N	\N	sequence	6	SO	sequence_collection	inversion_derived_deficiency_plus_aneuploid
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0000512	"A chromosomal deletion whereby a chromosome generated by recombination between two inversions; has a deficiency at one end and presumed to have a deficiency or duplication at the other end of the inversion." [FB:km]	4965991	\N	\N	sequence	6	SO	variant_genome	inversion_derived_deficiency_plus_aneuploid
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0000512	"A chromosomal deletion whereby a chromosome generated by recombination between two inversions; has a deficiency at one end and presumed to have a deficiency or duplication at the other end of the inversion." [FB:km]	5740932	\N	\N	sequence	7	SO	genome	inversion_derived_deficiency_plus_aneuploid
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000512	"A chromosomal deletion whereby a chromosome generated by recombination between two inversions; has a deficiency at one end and presumed to have a deficiency or duplication at the other end of the inversion." [FB:km]	6310883	\N	\N	sequence	8	SO	sequence_collection	inversion_derived_deficiency_plus_aneuploid
SO:0000513	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000513	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45460	\N	\N	sequence	0	SO	J_cluster	J_cluster
SO:0000482	SO:0000513	\N	"" []	SO:0000513	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490099	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_gene_cluster	J_cluster
SO:0000301	SO:0000482	\N	"" []	SO:0000513	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072569	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	J_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000513	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903612	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	J_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000513	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928082	\N	\N	sequence	4	SO	specific_recombination_site	J_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000513	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001441	\N	\N	sequence	5	SO	sequence_rearrangement_feature	J_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000513	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4965992	\N	\N	sequence	6	SO	recombination_feature	J_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000513	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740933	\N	SOFA	sequence	7	SO	biological_region	J_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000513	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310884	SOFA	SOFA	sequence	8	SO	region	J_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000513	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699265	SOFA	SOFA	sequence	9	SO	sequence_feature	J_cluster
SO:0000514	\N	\N	"9 nucleotide recombination site (e.g. GGTTTTTGT), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000514	"9 nucleotide recombination site (e.g. GGTTTTTGT), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45461	\N	\N	sequence	0	SO	J_nonamer	J_nonamer
SO:0000302	SO:0000514	\N	"Recombination signal including J-heptamer, J-spacer and J-nonamer in 5' of J-region of a J-gene or J-sequence." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000514	"9 nucleotide recombination site (e.g. GGTTTTTGT), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490100	\N	\N	sequence	1	SO	J_gene_recombination_feature	J_nonamer
SO:0000562	SO:0000514	\N	"" []	SO:0000514	"9 nucleotide recombination site (e.g. GGTTTTTGT), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490101	\N	\N	sequence	1	SO	nonamer_of_recombination_feature_of_vertebrate_immune_system_gene	J_nonamer
SO:0000939	SO:0000302	\N	"" []	SO:0000514	"9 nucleotide recombination site (e.g. GGTTTTTGT), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072570	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_signal_feature	J_nonamer
SO:0000939	SO:0000562	\N	"" []	SO:0000514	"9 nucleotide recombination site (e.g. GGTTTTTGT), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072571	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_signal_feature	J_nonamer
SO:0000301	SO:0000939	\N	"" []	SO:0000514	"9 nucleotide recombination site (e.g. GGTTTTTGT), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903613	\N	\N	sequence	3	SO	vertebrate_immune_system_gene_recombination_feature	J_nonamer
SO:0000300	SO:0000301	\N	"" []	SO:0000514	"9 nucleotide recombination site (e.g. GGTTTTTGT), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928083	\N	\N	sequence	4	SO	recombination_feature_of_rearranged_gene	J_nonamer
SO:0000299	SO:0000300	\N	"" []	SO:0000514	"9 nucleotide recombination site (e.g. GGTTTTTGT), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001442	\N	\N	sequence	5	SO	specific_recombination_site	J_nonamer
SO:0000669	SO:0000299	\N	"" []	SO:0000514	"9 nucleotide recombination site (e.g. GGTTTTTGT), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4965993	\N	\N	sequence	6	SO	sequence_rearrangement_feature	J_nonamer
SO:0000298	SO:0000669	\N	"" []	SO:0000514	"9 nucleotide recombination site (e.g. GGTTTTTGT), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740934	\N	\N	sequence	7	SO	recombination_feature	J_nonamer
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000514	"9 nucleotide recombination site (e.g. GGTTTTTGT), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310885	\N	SOFA	sequence	8	SO	biological_region	J_nonamer
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000514	"9 nucleotide recombination site (e.g. GGTTTTTGT), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699266	SOFA	SOFA	sequence	9	SO	region	J_nonamer
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000514	"9 nucleotide recombination site (e.g. GGTTTTTGT), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6948066	SOFA	SOFA	sequence	10	SO	sequence_feature	J_nonamer
SO:0000515	\N	\N	"7 nucleotide recombination site (e.g. CACAGTG), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000515	"7 nucleotide recombination site (e.g. CACAGTG), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45462	\N	\N	sequence	0	SO	J_heptamer	J_heptamer
SO:0000302	SO:0000515	\N	"Recombination signal including J-heptamer, J-spacer and J-nonamer in 5' of J-region of a J-gene or J-sequence." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000515	"7 nucleotide recombination site (e.g. CACAGTG), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490102	\N	\N	sequence	1	SO	J_gene_recombination_feature	J_heptamer
SO:0000561	SO:0000515	\N	"Seven nucleotide recombination site (e.g. CACAGTG), part of V-gene, D-gene or J-gene recombination feature of an immunoglobulin or T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000515	"7 nucleotide recombination site (e.g. CACAGTG), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490103	\N	\N	sequence	1	SO	heptamer_of_recombination_feature_of_vertebrate_immune_system_gene	J_heptamer
SO:0000939	SO:0000302	\N	"" []	SO:0000515	"7 nucleotide recombination site (e.g. CACAGTG), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072572	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_signal_feature	J_heptamer
SO:0000939	SO:0000561	\N	"" []	SO:0000515	"7 nucleotide recombination site (e.g. CACAGTG), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072573	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_signal_feature	J_heptamer
SO:0000301	SO:0000939	\N	"" []	SO:0000515	"7 nucleotide recombination site (e.g. CACAGTG), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903614	\N	\N	sequence	3	SO	vertebrate_immune_system_gene_recombination_feature	J_heptamer
SO:0000300	SO:0000301	\N	"" []	SO:0000515	"7 nucleotide recombination site (e.g. CACAGTG), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928084	\N	\N	sequence	4	SO	recombination_feature_of_rearranged_gene	J_heptamer
SO:0000299	SO:0000300	\N	"" []	SO:0000515	"7 nucleotide recombination site (e.g. CACAGTG), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001443	\N	\N	sequence	5	SO	specific_recombination_site	J_heptamer
SO:0000669	SO:0000299	\N	"" []	SO:0000515	"7 nucleotide recombination site (e.g. CACAGTG), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4965994	\N	\N	sequence	6	SO	sequence_rearrangement_feature	J_heptamer
SO:0000298	SO:0000669	\N	"" []	SO:0000515	"7 nucleotide recombination site (e.g. CACAGTG), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740935	\N	\N	sequence	7	SO	recombination_feature	J_heptamer
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000515	"7 nucleotide recombination site (e.g. CACAGTG), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310886	\N	SOFA	sequence	8	SO	biological_region	J_heptamer
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000515	"7 nucleotide recombination site (e.g. CACAGTG), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699267	SOFA	SOFA	sequence	9	SO	region	J_heptamer
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000515	"7 nucleotide recombination site (e.g. CACAGTG), part of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6948067	SOFA	SOFA	sequence	10	SO	sequence_feature	J_heptamer
SO:0000516	\N	\N	"A non functional descendant of a transcript, part of a pseudogene." [SO:ke]	SO:0000516	"A non functional descendant of a transcript, part of a pseudogene." [SO:ke]	45463	\N	\N	sequence	0	SO	pseudogenic_transcript	pseudogenic_transcript
SO:0000336	SO:0000516	\N	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	SO:0000516	"A non functional descendant of a transcript, part of a pseudogene." [SO:ke]	490104	\N	SOFA	sequence	1	SO	pseudogene	pseudogenic_transcript
SO:0000462	SO:0000516	\N	"A non-functional descendant of a functional entity." [SO:cjm]	SO:0000516	"A non functional descendant of a transcript, part of a pseudogene." [SO:ke]	490105	\N	SOFA	sequence	1	SO	pseudogenic_region	pseudogenic_transcript
SO:0001411	SO:0000336	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000516	"A non functional descendant of a transcript, part of a pseudogene." [SO:ke]	1072574	SOFA	SOFA	sequence	2	SO	biological_region	pseudogenic_transcript
SO:0001411	SO:0000462	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000516	"A non functional descendant of a transcript, part of a pseudogene." [SO:ke]	1072575	SOFA	SOFA	sequence	2	SO	biological_region	pseudogenic_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000516	"A non functional descendant of a transcript, part of a pseudogene." [SO:ke]	1903615	SOFA	SOFA	sequence	3	SO	region	pseudogenic_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000516	"A non functional descendant of a transcript, part of a pseudogene." [SO:ke]	2928085	SOFA	SOFA	sequence	4	SO	sequence_feature	pseudogenic_transcript
SO:0000517	\N	\N	"12 or 23 nucleotide spacer between the J-nonamer and the J-heptamer of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000517	"12 or 23 nucleotide spacer between the J-nonamer and the J-heptamer of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45464	\N	\N	sequence	0	SO	J_spacer	J_spacer
SO:0000302	SO:0000517	\N	"Recombination signal including J-heptamer, J-spacer and J-nonamer in 5' of J-region of a J-gene or J-sequence." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000517	"12 or 23 nucleotide spacer between the J-nonamer and the J-heptamer of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490106	\N	\N	sequence	1	SO	J_gene_recombination_feature	J_spacer
SO:0000563	SO:0000517	\N	"" []	SO:0000517	"12 or 23 nucleotide spacer between the J-nonamer and the J-heptamer of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490107	\N	\N	sequence	1	SO	vertebrate_immune_system_gene_recombination_spacer	J_spacer
SO:0000939	SO:0000302	\N	"" []	SO:0000517	"12 or 23 nucleotide spacer between the J-nonamer and the J-heptamer of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072576	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_signal_feature	J_spacer
SO:0000301	SO:0000563	\N	"" []	SO:0000517	"12 or 23 nucleotide spacer between the J-nonamer and the J-heptamer of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072577	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	J_spacer
SO:0000301	SO:0000939	\N	"" []	SO:0000517	"12 or 23 nucleotide spacer between the J-nonamer and the J-heptamer of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903616	\N	\N	sequence	3	SO	vertebrate_immune_system_gene_recombination_feature	J_spacer
SO:0000300	SO:0000301	\N	"" []	SO:0000517	"12 or 23 nucleotide spacer between the J-nonamer and the J-heptamer of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928086	\N	\N	sequence	4	SO	recombination_feature_of_rearranged_gene	J_spacer
SO:0000299	SO:0000300	\N	"" []	SO:0000517	"12 or 23 nucleotide spacer between the J-nonamer and the J-heptamer of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	3173884	\N	\N	sequence	5	SO	specific_recombination_site	J_spacer
SO:0000669	SO:0000299	\N	"" []	SO:0000517	"12 or 23 nucleotide spacer between the J-nonamer and the J-heptamer of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4385739	\N	\N	sequence	6	SO	sequence_rearrangement_feature	J_spacer
SO:0000298	SO:0000669	\N	"" []	SO:0000517	"12 or 23 nucleotide spacer between the J-nonamer and the J-heptamer of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5407401	\N	\N	sequence	7	SO	recombination_feature	J_spacer
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000517	"12 or 23 nucleotide spacer between the J-nonamer and the J-heptamer of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6146626	\N	SOFA	sequence	8	SO	biological_region	J_spacer
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000517	"12 or 23 nucleotide spacer between the J-nonamer and the J-heptamer of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6631382	SOFA	SOFA	sequence	9	SO	region	J_spacer
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000517	"12 or 23 nucleotide spacer between the J-nonamer and the J-heptamer of a J-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6925083	SOFA	SOFA	sequence	10	SO	sequence_feature	J_spacer
SO:0000518	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000518	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45465	\N	\N	sequence	0	SO	V_DJ_cluster	V_DJ_cluster
SO:0000938	SO:0000518	\N	"" []	SO:0000518	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490108	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	V_DJ_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000518	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072578	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	V_DJ_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000518	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903618	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	V_DJ_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000518	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928088	\N	\N	sequence	4	SO	specific_recombination_site	V_DJ_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000518	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001445	\N	\N	sequence	5	SO	sequence_rearrangement_feature	V_DJ_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000518	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4965996	\N	\N	sequence	6	SO	recombination_feature	V_DJ_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000518	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740937	\N	SOFA	sequence	7	SO	biological_region	V_DJ_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000518	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310888	SOFA	SOFA	sequence	8	SO	region	V_DJ_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000518	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699269	SOFA	SOFA	sequence	9	SO	sequence_feature	V_DJ_cluster
SO:0000519	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000519	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45466	\N	\N	sequence	0	SO	V_DJ_J_cluster	V_DJ_J_cluster
SO:0000938	SO:0000519	\N	"" []	SO:0000519	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490109	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	V_DJ_J_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000519	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072579	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	V_DJ_J_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000519	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903619	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	V_DJ_J_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000519	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928089	\N	\N	sequence	4	SO	specific_recombination_site	V_DJ_J_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000519	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001446	\N	\N	sequence	5	SO	sequence_rearrangement_feature	V_DJ_J_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000519	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4965997	\N	\N	sequence	6	SO	recombination_feature	V_DJ_J_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000519	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740938	\N	SOFA	sequence	7	SO	biological_region	V_DJ_J_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000519	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310889	SOFA	SOFA	sequence	8	SO	region	V_DJ_J_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000519	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699270	SOFA	SOFA	sequence	9	SO	sequence_feature	V_DJ_J_cluster
SO:0000520	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000520	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45467	\N	\N	sequence	0	SO	V_VDJ_C_cluster	V_VDJ_C_cluster
SO:0000938	SO:0000520	\N	"" []	SO:0000520	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490110	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	V_VDJ_C_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000520	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072580	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	V_VDJ_C_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000520	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903620	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	V_VDJ_C_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000520	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928090	\N	\N	sequence	4	SO	specific_recombination_site	V_VDJ_C_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000520	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001447	\N	\N	sequence	5	SO	sequence_rearrangement_feature	V_VDJ_C_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000520	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4965998	\N	\N	sequence	6	SO	recombination_feature	V_VDJ_C_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000520	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740939	\N	SOFA	sequence	7	SO	biological_region	V_VDJ_C_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000520	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310890	SOFA	SOFA	sequence	8	SO	region	V_VDJ_C_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000520	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699271	SOFA	SOFA	sequence	9	SO	sequence_feature	V_VDJ_C_cluster
SO:0000521	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one VDJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000521	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one VDJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45468	\N	\N	sequence	0	SO	V_VDJ_cluster	V_VDJ_cluster
SO:0000938	SO:0000521	\N	"" []	SO:0000521	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one VDJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490111	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	V_VDJ_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000521	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one VDJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072581	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	V_VDJ_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000521	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one VDJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903621	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	V_VDJ_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000521	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one VDJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928091	\N	\N	sequence	4	SO	specific_recombination_site	V_VDJ_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000521	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one VDJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001448	\N	\N	sequence	5	SO	sequence_rearrangement_feature	V_VDJ_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000521	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one VDJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4965999	\N	\N	sequence	6	SO	recombination_feature	V_VDJ_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000521	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one VDJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740940	\N	SOFA	sequence	7	SO	biological_region	V_VDJ_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000521	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one VDJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310891	SOFA	SOFA	sequence	8	SO	region	V_VDJ_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000521	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one VDJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699272	SOFA	SOFA	sequence	9	SO	sequence_feature	V_VDJ_cluster
SO:0000522	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000522	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45469	\N	\N	sequence	0	SO	V_VDJ_J_cluster	V_VDJ_J_cluster
SO:0000938	SO:0000522	\N	"" []	SO:0000522	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490112	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	V_VDJ_J_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000522	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072582	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	V_VDJ_J_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000522	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903622	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	V_VDJ_J_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000522	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928092	\N	\N	sequence	4	SO	specific_recombination_site	V_VDJ_J_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000522	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001449	\N	\N	sequence	5	SO	sequence_rearrangement_feature	V_VDJ_J_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000522	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966000	\N	\N	sequence	6	SO	recombination_feature	V_VDJ_J_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000522	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740941	\N	SOFA	sequence	7	SO	biological_region	V_VDJ_J_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000522	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310892	SOFA	SOFA	sequence	8	SO	region	V_VDJ_J_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000522	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699273	SOFA	SOFA	sequence	9	SO	sequence_feature	V_VDJ_J_cluster
SO:0000523	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000523	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45470	\N	\N	sequence	0	SO	V_VJ_C_cluster	V_VJ_C_cluster
SO:0000938	SO:0000523	\N	"" []	SO:0000523	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490113	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	V_VJ_C_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000523	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072583	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	V_VJ_C_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000523	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903623	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	V_VJ_C_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000523	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928093	\N	\N	sequence	4	SO	specific_recombination_site	V_VJ_C_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000523	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001450	\N	\N	sequence	5	SO	sequence_rearrangement_feature	V_VJ_C_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000523	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966001	\N	\N	sequence	6	SO	recombination_feature	V_VJ_C_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000523	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740942	\N	SOFA	sequence	7	SO	biological_region	V_VJ_C_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000523	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310893	SOFA	SOFA	sequence	8	SO	region	V_VJ_C_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000523	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699274	SOFA	SOFA	sequence	9	SO	sequence_feature	V_VJ_C_cluster
SO:0000524	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one VJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000524	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one VJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45471	\N	\N	sequence	0	SO	V_VJ_cluster	V_VJ_cluster
SO:0000938	SO:0000524	\N	"" []	SO:0000524	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one VJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490114	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	V_VJ_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000524	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one VJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072584	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	V_VJ_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000524	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one VJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903624	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	V_VJ_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000524	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one VJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928094	\N	\N	sequence	4	SO	specific_recombination_site	V_VJ_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000524	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one VJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001451	\N	\N	sequence	5	SO	sequence_rearrangement_feature	V_VJ_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000524	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one VJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966002	\N	\N	sequence	6	SO	recombination_feature	V_VJ_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000524	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one VJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740943	\N	SOFA	sequence	7	SO	biological_region	V_VJ_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000524	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one VJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310894	SOFA	SOFA	sequence	8	SO	region	V_VJ_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000524	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one VJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699275	SOFA	SOFA	sequence	9	SO	sequence_feature	V_VJ_cluster
SO:0000525	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000525	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45472	\N	\N	sequence	0	SO	V_VJ_J_cluster	V_VJ_J_cluster
SO:0000938	SO:0000525	\N	"" []	SO:0000525	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490115	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	V_VJ_J_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000525	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072585	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	V_VJ_J_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000525	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903625	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	V_VJ_J_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000525	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928095	\N	\N	sequence	4	SO	specific_recombination_site	V_VJ_J_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000525	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001452	\N	\N	sequence	5	SO	sequence_rearrangement_feature	V_VJ_J_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000525	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966003	\N	\N	sequence	6	SO	recombination_feature	V_VJ_J_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000525	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740944	\N	SOFA	sequence	7	SO	biological_region	V_VJ_J_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000525	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310895	SOFA	SOFA	sequence	8	SO	region	V_VJ_J_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000525	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699276	SOFA	SOFA	sequence	9	SO	sequence_feature	V_VJ_J_cluster
SO:0000526	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one V-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000526	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one V-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45473	\N	\N	sequence	0	SO	V_cluster	V_cluster
SO:0000482	SO:0000526	\N	"" []	SO:0000526	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one V-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490116	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_gene_cluster	V_cluster
SO:0000301	SO:0000482	\N	"" []	SO:0000526	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one V-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072586	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	V_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000526	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one V-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903626	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	V_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000526	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one V-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928096	\N	\N	sequence	4	SO	specific_recombination_site	V_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000526	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one V-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001453	\N	\N	sequence	5	SO	sequence_rearrangement_feature	V_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000526	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one V-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966004	\N	\N	sequence	6	SO	recombination_feature	V_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000526	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one V-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740945	\N	SOFA	sequence	7	SO	biological_region	V_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000526	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one V-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310896	SOFA	SOFA	sequence	8	SO	region	V_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000526	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one V-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699277	SOFA	SOFA	sequence	9	SO	sequence_feature	V_cluster
SO:0000527	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000527	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45474	\N	\N	sequence	0	SO	V_D_DJ_C_cluster	V_D_DJ_C_cluster
SO:0000938	SO:0000527	\N	"" []	SO:0000527	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490117	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	V_D_DJ_C_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000527	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072587	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	V_D_DJ_C_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000527	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903627	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	V_D_DJ_C_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000527	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928097	\N	\N	sequence	4	SO	specific_recombination_site	V_D_DJ_C_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000527	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001454	\N	\N	sequence	5	SO	sequence_rearrangement_feature	V_D_DJ_C_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000527	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966005	\N	\N	sequence	6	SO	recombination_feature	V_D_DJ_C_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000527	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740946	\N	SOFA	sequence	7	SO	biological_region	V_D_DJ_C_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000527	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310897	SOFA	SOFA	sequence	8	SO	region	V_D_DJ_C_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000527	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699278	SOFA	SOFA	sequence	9	SO	sequence_feature	V_D_DJ_C_cluster
SO:0000528	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000528	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45475	\N	\N	sequence	0	SO	V_D_DJ_cluster	V_D_DJ_cluster
SO:0000938	SO:0000528	\N	"" []	SO:0000528	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490118	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	V_D_DJ_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000528	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072588	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	V_D_DJ_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000528	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903628	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	V_D_DJ_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000528	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928098	\N	\N	sequence	4	SO	specific_recombination_site	V_D_DJ_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000528	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001455	\N	\N	sequence	5	SO	sequence_rearrangement_feature	V_D_DJ_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000528	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966006	\N	\N	sequence	6	SO	recombination_feature	V_D_DJ_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000528	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740947	\N	SOFA	sequence	7	SO	biological_region	V_D_DJ_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000528	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310898	SOFA	SOFA	sequence	8	SO	region	V_D_DJ_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000528	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699279	SOFA	SOFA	sequence	9	SO	sequence_feature	V_D_DJ_cluster
SO:0000529	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000529	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45476	\N	\N	sequence	0	SO	V_D_DJ_J_C_cluster	V_D_DJ_J_C_cluster
SO:0000938	SO:0000529	\N	"" []	SO:0000529	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490119	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	V_D_DJ_J_C_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000529	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072589	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	V_D_DJ_J_C_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000529	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903629	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	V_D_DJ_J_C_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000529	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928099	\N	\N	sequence	4	SO	specific_recombination_site	V_D_DJ_J_C_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000529	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001456	\N	\N	sequence	5	SO	sequence_rearrangement_feature	V_D_DJ_J_C_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000529	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966007	\N	\N	sequence	6	SO	recombination_feature	V_D_DJ_J_C_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000529	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740948	\N	SOFA	sequence	7	SO	biological_region	V_D_DJ_J_C_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000529	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310899	SOFA	SOFA	sequence	8	SO	region	V_D_DJ_J_C_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000529	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699280	SOFA	SOFA	sequence	9	SO	sequence_feature	V_D_DJ_J_C_cluster
SO:0000530	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000530	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45477	\N	\N	sequence	0	SO	V_D_DJ_J_cluster	V_D_DJ_J_cluster
SO:0000938	SO:0000530	\N	"" []	SO:0000530	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490120	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	V_D_DJ_J_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000530	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072590	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	V_D_DJ_J_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000530	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903630	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	V_D_DJ_J_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000530	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928100	\N	\N	sequence	4	SO	specific_recombination_site	V_D_DJ_J_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000530	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001457	\N	\N	sequence	5	SO	sequence_rearrangement_feature	V_D_DJ_J_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000530	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966008	\N	\N	sequence	6	SO	recombination_feature	V_D_DJ_J_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000530	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740949	\N	SOFA	sequence	7	SO	biological_region	V_D_DJ_J_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000530	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310900	SOFA	SOFA	sequence	8	SO	region	V_D_DJ_J_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000530	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699281	SOFA	SOFA	sequence	9	SO	sequence_feature	V_D_DJ_J_cluster
SO:0000531	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one D-gene and one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000531	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one D-gene and one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45478	\N	\N	sequence	0	SO	V_D_J_C_cluster	V_D_J_C_cluster
SO:0000938	SO:0000531	\N	"" []	SO:0000531	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one D-gene and one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490121	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	V_D_J_C_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000531	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one D-gene and one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072591	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	V_D_J_C_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000531	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one D-gene and one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903631	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	V_D_J_C_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000531	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one D-gene and one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928101	\N	\N	sequence	4	SO	specific_recombination_site	V_D_J_C_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000531	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one D-gene and one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001458	\N	\N	sequence	5	SO	sequence_rearrangement_feature	V_D_J_C_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000531	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one D-gene and one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966009	\N	\N	sequence	6	SO	recombination_feature	V_D_J_C_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000531	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one D-gene and one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740950	\N	SOFA	sequence	7	SO	biological_region	V_D_J_C_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000531	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one D-gene and one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310901	SOFA	SOFA	sequence	8	SO	region	V_D_J_C_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000531	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one D-gene and one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699282	SOFA	SOFA	sequence	9	SO	sequence_feature	V_D_J_C_cluster
SO:0000532	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one D-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000532	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one D-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45479	\N	\N	sequence	0	SO	V_D_J_cluster	V_D_J_cluster
SO:0000938	SO:0000532	\N	"" []	SO:0000532	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one D-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490122	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	V_D_J_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000532	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one D-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072592	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	V_D_J_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000532	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one D-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903632	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	V_D_J_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000532	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one D-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928102	\N	\N	sequence	4	SO	specific_recombination_site	V_D_J_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000532	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one D-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001459	\N	\N	sequence	5	SO	sequence_rearrangement_feature	V_D_J_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000532	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one D-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966010	\N	\N	sequence	6	SO	recombination_feature	V_D_J_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000532	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one D-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740951	\N	SOFA	sequence	7	SO	biological_region	V_D_J_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000532	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one D-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310902	SOFA	SOFA	sequence	8	SO	region	V_D_J_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000532	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one D-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699283	SOFA	SOFA	sequence	9	SO	sequence_feature	V_D_J_cluster
SO:0000533	\N	\N	"7 nucleotide recombination site (e.g. CACAGTG), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000533	"7 nucleotide recombination site (e.g. CACAGTG), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45480	\N	\N	sequence	0	SO	V_heptamer	V_heptamer
SO:0000538	SO:0000533	\N	"Recombination signal including V-heptamer, V-spacer and V-nonamer in 3' of V-region of a V-gene or V-sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000533	"7 nucleotide recombination site (e.g. CACAGTG), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490123	\N	\N	sequence	1	SO	V_gene_recombination_feature	V_heptamer
SO:0000561	SO:0000533	\N	"Seven nucleotide recombination site (e.g. CACAGTG), part of V-gene, D-gene or J-gene recombination feature of an immunoglobulin or T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000533	"7 nucleotide recombination site (e.g. CACAGTG), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490124	\N	\N	sequence	1	SO	heptamer_of_recombination_feature_of_vertebrate_immune_system_gene	V_heptamer
SO:0000939	SO:0000538	\N	"" []	SO:0000533	"7 nucleotide recombination site (e.g. CACAGTG), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072593	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_signal_feature	V_heptamer
SO:0000939	SO:0000561	\N	"" []	SO:0000533	"7 nucleotide recombination site (e.g. CACAGTG), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072594	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_signal_feature	V_heptamer
SO:0000301	SO:0000939	\N	"" []	SO:0000533	"7 nucleotide recombination site (e.g. CACAGTG), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903633	\N	\N	sequence	3	SO	vertebrate_immune_system_gene_recombination_feature	V_heptamer
SO:0000300	SO:0000301	\N	"" []	SO:0000533	"7 nucleotide recombination site (e.g. CACAGTG), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928103	\N	\N	sequence	4	SO	recombination_feature_of_rearranged_gene	V_heptamer
SO:0000299	SO:0000300	\N	"" []	SO:0000533	"7 nucleotide recombination site (e.g. CACAGTG), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001460	\N	\N	sequence	5	SO	specific_recombination_site	V_heptamer
SO:0000669	SO:0000299	\N	"" []	SO:0000533	"7 nucleotide recombination site (e.g. CACAGTG), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966011	\N	\N	sequence	6	SO	sequence_rearrangement_feature	V_heptamer
SO:0000298	SO:0000669	\N	"" []	SO:0000533	"7 nucleotide recombination site (e.g. CACAGTG), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740952	\N	\N	sequence	7	SO	recombination_feature	V_heptamer
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000533	"7 nucleotide recombination site (e.g. CACAGTG), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310903	\N	SOFA	sequence	8	SO	biological_region	V_heptamer
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000533	"7 nucleotide recombination site (e.g. CACAGTG), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699284	SOFA	SOFA	sequence	9	SO	region	V_heptamer
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000533	"7 nucleotide recombination site (e.g. CACAGTG), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6948068	SOFA	SOFA	sequence	10	SO	sequence_feature	V_heptamer
SO:0000534	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000534	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45481	\N	\N	sequence	0	SO	V_J_cluster	V_J_cluster
SO:0000482	SO:0000534	\N	"" []	SO:0000534	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490125	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_gene_cluster	V_J_cluster
SO:0000301	SO:0000482	\N	"" []	SO:0000534	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072595	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	V_J_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000534	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903634	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	V_J_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000534	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928104	\N	\N	sequence	4	SO	specific_recombination_site	V_J_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000534	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001461	\N	\N	sequence	5	SO	sequence_rearrangement_feature	V_J_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000534	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966012	\N	\N	sequence	6	SO	recombination_feature	V_J_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000534	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740953	\N	SOFA	sequence	7	SO	biological_region	V_J_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000534	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310904	SOFA	SOFA	sequence	8	SO	region	V_J_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000534	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699285	SOFA	SOFA	sequence	9	SO	sequence_feature	V_J_cluster
SO:0000535	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000535	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45482	\N	\N	sequence	0	SO	V_J_C_cluster	V_J_C_cluster
SO:0000482	SO:0000535	\N	"" []	SO:0000535	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490126	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_gene_cluster	V_J_C_cluster
SO:0000301	SO:0000482	\N	"" []	SO:0000535	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072596	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	V_J_C_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000535	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903635	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	V_J_C_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000535	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928105	\N	\N	sequence	4	SO	specific_recombination_site	V_J_C_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000535	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001462	\N	\N	sequence	5	SO	sequence_rearrangement_feature	V_J_C_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000535	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966013	\N	\N	sequence	6	SO	recombination_feature	V_J_C_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000535	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740954	\N	SOFA	sequence	7	SO	biological_region	V_J_C_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000535	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310905	SOFA	SOFA	sequence	8	SO	region	V_J_C_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000535	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699286	SOFA	SOFA	sequence	9	SO	sequence_feature	V_J_C_cluster
SO:0000536	\N	\N	"9 nucleotide recombination site (e.g. ACAAAAACC), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000536	"9 nucleotide recombination site (e.g. ACAAAAACC), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45483	\N	\N	sequence	0	SO	V_nonamer	V_nonamer
SO:0000538	SO:0000536	\N	"Recombination signal including V-heptamer, V-spacer and V-nonamer in 3' of V-region of a V-gene or V-sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000536	"9 nucleotide recombination site (e.g. ACAAAAACC), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490127	\N	\N	sequence	1	SO	V_gene_recombination_feature	V_nonamer
SO:0000562	SO:0000536	\N	"" []	SO:0000536	"9 nucleotide recombination site (e.g. ACAAAAACC), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490128	\N	\N	sequence	1	SO	nonamer_of_recombination_feature_of_vertebrate_immune_system_gene	V_nonamer
SO:0000939	SO:0000538	\N	"" []	SO:0000536	"9 nucleotide recombination site (e.g. ACAAAAACC), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072597	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_signal_feature	V_nonamer
SO:0000939	SO:0000562	\N	"" []	SO:0000536	"9 nucleotide recombination site (e.g. ACAAAAACC), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072598	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_signal_feature	V_nonamer
SO:0000301	SO:0000939	\N	"" []	SO:0000536	"9 nucleotide recombination site (e.g. ACAAAAACC), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903636	\N	\N	sequence	3	SO	vertebrate_immune_system_gene_recombination_feature	V_nonamer
SO:0000300	SO:0000301	\N	"" []	SO:0000536	"9 nucleotide recombination site (e.g. ACAAAAACC), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928106	\N	\N	sequence	4	SO	recombination_feature_of_rearranged_gene	V_nonamer
SO:0000299	SO:0000300	\N	"" []	SO:0000536	"9 nucleotide recombination site (e.g. ACAAAAACC), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001463	\N	\N	sequence	5	SO	specific_recombination_site	V_nonamer
SO:0000669	SO:0000299	\N	"" []	SO:0000536	"9 nucleotide recombination site (e.g. ACAAAAACC), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966014	\N	\N	sequence	6	SO	sequence_rearrangement_feature	V_nonamer
SO:0000298	SO:0000669	\N	"" []	SO:0000536	"9 nucleotide recombination site (e.g. ACAAAAACC), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740955	\N	\N	sequence	7	SO	recombination_feature	V_nonamer
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000536	"9 nucleotide recombination site (e.g. ACAAAAACC), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310906	\N	SOFA	sequence	8	SO	biological_region	V_nonamer
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000536	"9 nucleotide recombination site (e.g. ACAAAAACC), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699287	SOFA	SOFA	sequence	9	SO	region	V_nonamer
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000536	"9 nucleotide recombination site (e.g. ACAAAAACC), part of V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6948069	SOFA	SOFA	sequence	10	SO	sequence_feature	V_nonamer
SO:0000537	\N	\N	"12 or 23 nucleotide spacer between the V-heptamer and the V-nonamer of a V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000537	"12 or 23 nucleotide spacer between the V-heptamer and the V-nonamer of a V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45484	\N	\N	sequence	0	SO	V_spacer	V_spacer
SO:0000538	SO:0000537	\N	"Recombination signal including V-heptamer, V-spacer and V-nonamer in 3' of V-region of a V-gene or V-sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000537	"12 or 23 nucleotide spacer between the V-heptamer and the V-nonamer of a V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490129	\N	\N	sequence	1	SO	V_gene_recombination_feature	V_spacer
SO:0000563	SO:0000537	\N	"" []	SO:0000537	"12 or 23 nucleotide spacer between the V-heptamer and the V-nonamer of a V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490130	\N	\N	sequence	1	SO	vertebrate_immune_system_gene_recombination_spacer	V_spacer
SO:0000939	SO:0000538	\N	"" []	SO:0000537	"12 or 23 nucleotide spacer between the V-heptamer and the V-nonamer of a V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072599	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_signal_feature	V_spacer
SO:0000301	SO:0000563	\N	"" []	SO:0000537	"12 or 23 nucleotide spacer between the V-heptamer and the V-nonamer of a V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072600	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	V_spacer
SO:0000301	SO:0000939	\N	"" []	SO:0000537	"12 or 23 nucleotide spacer between the V-heptamer and the V-nonamer of a V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903637	\N	\N	sequence	3	SO	vertebrate_immune_system_gene_recombination_feature	V_spacer
SO:0000300	SO:0000301	\N	"" []	SO:0000537	"12 or 23 nucleotide spacer between the V-heptamer and the V-nonamer of a V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928107	\N	\N	sequence	4	SO	recombination_feature_of_rearranged_gene	V_spacer
SO:0000299	SO:0000300	\N	"" []	SO:0000537	"12 or 23 nucleotide spacer between the V-heptamer and the V-nonamer of a V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	3173885	\N	\N	sequence	5	SO	specific_recombination_site	V_spacer
SO:0000669	SO:0000299	\N	"" []	SO:0000537	"12 or 23 nucleotide spacer between the V-heptamer and the V-nonamer of a V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4385740	\N	\N	sequence	6	SO	sequence_rearrangement_feature	V_spacer
SO:0000298	SO:0000669	\N	"" []	SO:0000537	"12 or 23 nucleotide spacer between the V-heptamer and the V-nonamer of a V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5407402	\N	\N	sequence	7	SO	recombination_feature	V_spacer
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000537	"12 or 23 nucleotide spacer between the V-heptamer and the V-nonamer of a V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6146627	\N	SOFA	sequence	8	SO	biological_region	V_spacer
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000537	"12 or 23 nucleotide spacer between the V-heptamer and the V-nonamer of a V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6631383	SOFA	SOFA	sequence	9	SO	region	V_spacer
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000537	"12 or 23 nucleotide spacer between the V-heptamer and the V-nonamer of a V-gene recombination feature of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6925084	SOFA	SOFA	sequence	10	SO	sequence_feature	V_spacer
SO:0000538	\N	\N	"Recombination signal including V-heptamer, V-spacer and V-nonamer in 3' of V-region of a V-gene or V-sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000538	"Recombination signal including V-heptamer, V-spacer and V-nonamer in 3' of V-region of a V-gene or V-sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45485	\N	\N	sequence	0	SO	V_gene_recombination_feature	V_gene_recombination_feature
SO:0000939	SO:0000538	\N	"" []	SO:0000538	"Recombination signal including V-heptamer, V-spacer and V-nonamer in 3' of V-region of a V-gene or V-sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490131	\N	\N	sequence	1	SO	vertebrate_immune_system_gene_recombination_signal_feature	V_gene_recombination_feature
SO:0000301	SO:0000939	\N	"" []	SO:0000538	"Recombination signal including V-heptamer, V-spacer and V-nonamer in 3' of V-region of a V-gene or V-sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072601	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	V_gene_recombination_feature
SO:0000300	SO:0000301	\N	"" []	SO:0000538	"Recombination signal including V-heptamer, V-spacer and V-nonamer in 3' of V-region of a V-gene or V-sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903639	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	V_gene_recombination_feature
SO:0000299	SO:0000300	\N	"" []	SO:0000538	"Recombination signal including V-heptamer, V-spacer and V-nonamer in 3' of V-region of a V-gene or V-sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928109	\N	\N	sequence	4	SO	specific_recombination_site	V_gene_recombination_feature
SO:0000669	SO:0000299	\N	"" []	SO:0000538	"Recombination signal including V-heptamer, V-spacer and V-nonamer in 3' of V-region of a V-gene or V-sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001465	\N	\N	sequence	5	SO	sequence_rearrangement_feature	V_gene_recombination_feature
SO:0000298	SO:0000669	\N	"" []	SO:0000538	"Recombination signal including V-heptamer, V-spacer and V-nonamer in 3' of V-region of a V-gene or V-sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966016	\N	\N	sequence	6	SO	recombination_feature	V_gene_recombination_feature
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000538	"Recombination signal including V-heptamer, V-spacer and V-nonamer in 3' of V-region of a V-gene or V-sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740957	\N	SOFA	sequence	7	SO	biological_region	V_gene_recombination_feature
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000538	"Recombination signal including V-heptamer, V-spacer and V-nonamer in 3' of V-region of a V-gene or V-sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310908	SOFA	SOFA	sequence	8	SO	region	V_gene_recombination_feature
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000538	"Recombination signal including V-heptamer, V-spacer and V-nonamer in 3' of V-region of a V-gene or V-sequence of an immunoglobulin/T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699289	SOFA	SOFA	sequence	9	SO	sequence_feature	V_gene_recombination_feature
SO:0000539	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000539	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45486	\N	\N	sequence	0	SO	DJ_C_cluster	DJ_C_cluster
SO:0000938	SO:0000539	\N	"" []	SO:0000539	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490132	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	DJ_C_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000539	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072602	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	DJ_C_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000539	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903640	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	DJ_C_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000539	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928110	\N	\N	sequence	4	SO	specific_recombination_site	DJ_C_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000539	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001466	\N	\N	sequence	5	SO	sequence_rearrangement_feature	DJ_C_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000539	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966017	\N	\N	sequence	6	SO	recombination_feature	DJ_C_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000539	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740958	\N	SOFA	sequence	7	SO	biological_region	DJ_C_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000539	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310909	SOFA	SOFA	sequence	8	SO	region	DJ_C_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000539	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699290	SOFA	SOFA	sequence	9	SO	sequence_feature	DJ_C_cluster
SO:0000540	\N	\N	"Genomic DNA in rearranged configuration including at least one D-J-GENE, one J-GENE and one C-GENE." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000540	"Genomic DNA in rearranged configuration including at least one D-J-GENE, one J-GENE and one C-GENE." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45487	\N	\N	sequence	0	SO	DJ_J_C_cluster	DJ_J_C_cluster
SO:0000938	SO:0000540	\N	"" []	SO:0000540	"Genomic DNA in rearranged configuration including at least one D-J-GENE, one J-GENE and one C-GENE." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490133	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	DJ_J_C_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000540	"Genomic DNA in rearranged configuration including at least one D-J-GENE, one J-GENE and one C-GENE." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072603	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	DJ_J_C_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000540	"Genomic DNA in rearranged configuration including at least one D-J-GENE, one J-GENE and one C-GENE." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903641	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	DJ_J_C_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000540	"Genomic DNA in rearranged configuration including at least one D-J-GENE, one J-GENE and one C-GENE." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928111	\N	\N	sequence	4	SO	specific_recombination_site	DJ_J_C_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000540	"Genomic DNA in rearranged configuration including at least one D-J-GENE, one J-GENE and one C-GENE." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001467	\N	\N	sequence	5	SO	sequence_rearrangement_feature	DJ_J_C_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000540	"Genomic DNA in rearranged configuration including at least one D-J-GENE, one J-GENE and one C-GENE." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966018	\N	\N	sequence	6	SO	recombination_feature	DJ_J_C_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000540	"Genomic DNA in rearranged configuration including at least one D-J-GENE, one J-GENE and one C-GENE." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740959	\N	SOFA	sequence	7	SO	biological_region	DJ_J_C_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000540	"Genomic DNA in rearranged configuration including at least one D-J-GENE, one J-GENE and one C-GENE." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310910	SOFA	SOFA	sequence	8	SO	region	DJ_J_C_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000540	"Genomic DNA in rearranged configuration including at least one D-J-GENE, one J-GENE and one C-GENE." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699291	SOFA	SOFA	sequence	9	SO	sequence_feature	DJ_J_C_cluster
SO:0000541	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000541	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45488	\N	\N	sequence	0	SO	VDJ_C_cluster	VDJ_C_cluster
SO:0000938	SO:0000541	\N	"" []	SO:0000541	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490134	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	VDJ_C_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000541	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072604	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	VDJ_C_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000541	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903642	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	VDJ_C_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000541	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928112	\N	\N	sequence	4	SO	specific_recombination_site	VDJ_C_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000541	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001468	\N	\N	sequence	5	SO	sequence_rearrangement_feature	VDJ_C_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000541	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966019	\N	\N	sequence	6	SO	recombination_feature	VDJ_C_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000541	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740960	\N	SOFA	sequence	7	SO	biological_region	VDJ_C_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000541	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310911	SOFA	SOFA	sequence	8	SO	region	VDJ_C_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000541	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699292	SOFA	SOFA	sequence	9	SO	sequence_feature	VDJ_C_cluster
SO:0000542	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000542	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45489	\N	\N	sequence	0	SO	V_DJ_C_cluster	V_DJ_C_cluster
SO:0000938	SO:0000542	\N	"" []	SO:0000542	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490135	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	V_DJ_C_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000542	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072605	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	V_DJ_C_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000542	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903643	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	V_DJ_C_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000542	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928113	\N	\N	sequence	4	SO	specific_recombination_site	V_DJ_C_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000542	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001469	\N	\N	sequence	5	SO	sequence_rearrangement_feature	V_DJ_C_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000542	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966020	\N	\N	sequence	6	SO	recombination_feature	V_DJ_C_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000542	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740961	\N	SOFA	sequence	7	SO	biological_region	V_DJ_C_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000542	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310912	SOFA	SOFA	sequence	8	SO	region	V_DJ_C_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000542	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699293	SOFA	SOFA	sequence	9	SO	sequence_feature	V_DJ_C_cluster
SO:0000544	\N	\N	"A rolling circle transposon. Autonomous helitrons encode a 5'-to-3' DNA helicase and nuclease/ligase similar to those encoded by known rolling-circle replicons." [http://www.pnas.org/cgi/content/full/100/11/6569]	SO:0000544	"A rolling circle transposon. Autonomous helitrons encode a 5'-to-3' DNA helicase and nuclease/ligase similar to those encoded by known rolling-circle replicons." [http://www.pnas.org/cgi/content/full/100/11/6569]	45490	\N	\N	sequence	0	SO	helitron	helitron
SO:0000182	SO:0000544	\N	"A transposon where the mechanism of transposition is via a DNA intermediate." [SO:ke]	SO:0000544	"A rolling circle transposon. Autonomous helitrons encode a 5'-to-3' DNA helicase and nuclease/ligase similar to those encoded by known rolling-circle replicons." [http://www.pnas.org/cgi/content/full/100/11/6569]	490136	\N	\N	sequence	1	SO	DNA_transposon	helitron
SO:0000101	SO:0000182	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000544	"A rolling circle transposon. Autonomous helitrons encode a 5'-to-3' DNA helicase and nuclease/ligase similar to those encoded by known rolling-circle replicons." [http://www.pnas.org/cgi/content/full/100/11/6569]	1072606	\N	SOFA	sequence	2	SO	transposable_element	helitron
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000544	"A rolling circle transposon. Autonomous helitrons encode a 5'-to-3' DNA helicase and nuclease/ligase similar to those encoded by known rolling-circle replicons." [http://www.pnas.org/cgi/content/full/100/11/6569]	1903644	SOFA	SOFA	sequence	3	SO	integrated_mobile_genetic_element	helitron
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000544	"A rolling circle transposon. Autonomous helitrons encode a 5'-to-3' DNA helicase and nuclease/ligase similar to those encoded by known rolling-circle replicons." [http://www.pnas.org/cgi/content/full/100/11/6569]	2928114	SOFA	SOFA	sequence	4	SO	mobile_genetic_element	helitron
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000544	"A rolling circle transposon. Autonomous helitrons encode a 5'-to-3' DNA helicase and nuclease/ligase similar to those encoded by known rolling-circle replicons." [http://www.pnas.org/cgi/content/full/100/11/6569]	4001470	SOFA	SOFA	sequence	5	SO	biological_region	helitron
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000544	"A rolling circle transposon. Autonomous helitrons encode a 5'-to-3' DNA helicase and nuclease/ligase similar to those encoded by known rolling-circle replicons." [http://www.pnas.org/cgi/content/full/100/11/6569]	4966021	SOFA	SOFA	sequence	6	SO	region	helitron
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000544	"A rolling circle transposon. Autonomous helitrons encode a 5'-to-3' DNA helicase and nuclease/ligase similar to those encoded by known rolling-circle replicons." [http://www.pnas.org/cgi/content/full/100/11/6569]	5740962	SOFA	SOFA	sequence	7	SO	sequence_feature	helitron
SO:0000545	\N	\N	"The pseudoknots involved in recoding are unique in that, as they play their role as a structure, they are immediately unfolded and their now linear sequence serves as a template for decoding." [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=33937]	SO:0000545	"The pseudoknots involved in recoding are unique in that, as they play their role as a structure, they are immediately unfolded and their now linear sequence serves as a template for decoding." [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=33937]	45491	\N	\N	sequence	0	SO	recoding_pseudoknot	recoding_pseudoknot
SO:0000591	SO:0000545	\N	"A tertiary structure in RNA where nucleotides in a loop form base pairs with a region of RNA downstream of the loop." [RSC:cb]	SO:0000545	"The pseudoknots involved in recoding are unique in that, as they play their role as a structure, they are immediately unfolded and their now linear sequence serves as a template for decoding." [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=33937]	490137	\N	\N	sequence	1	SO	pseudoknot	recoding_pseudoknot
SO:1001268	SO:0000545	\N	"A site in an mRNA sequence that stimulates the recoding of a region in the same mRNA." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12519954&dopt=Abstract]	SO:0000545	"The pseudoknots involved in recoding are unique in that, as they play their role as a structure, they are immediately unfolded and their now linear sequence serves as a template for decoding." [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=33937]	490138	\N	\N	sequence	1	SO	recoding_stimulatory_region	recoding_pseudoknot
SO:0000002	SO:0000591	\N	"A folded sequence." [SO:ke]	SO:0000545	"The pseudoknots involved in recoding are unique in that, as they play their role as a structure, they are immediately unfolded and their now linear sequence serves as a template for decoding." [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=33937]	1072607	\N	\N	sequence	2	SO	sequence_secondary_structure	recoding_pseudoknot
SO:0000836	SO:1001268	\N	"A region of an mRNA." [SO:cb]	SO:0000545	"The pseudoknots involved in recoding are unique in that, as they play their role as a structure, they are immediately unfolded and their now linear sequence serves as a template for decoding." [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=33937]	1072608	\N	SOFA	sequence	2	SO	mRNA_region	recoding_pseudoknot
SO:0001411	SO:0000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000545	"The pseudoknots involved in recoding are unique in that, as they play their role as a structure, they are immediately unfolded and their now linear sequence serves as a template for decoding." [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=33937]	1903645	\N	SOFA	sequence	3	SO	biological_region	recoding_pseudoknot
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000545	"The pseudoknots involved in recoding are unique in that, as they play their role as a structure, they are immediately unfolded and their now linear sequence serves as a template for decoding." [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=33937]	1903646	SOFA	SOFA	sequence	3	SO	mRNA	recoding_pseudoknot
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:0000545	"The pseudoknots involved in recoding are unique in that, as they play their role as a structure, they are immediately unfolded and their now linear sequence serves as a template for decoding." [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=33937]	1903647	SOFA	SOFA	sequence	3	SO	mature_transcript_region	recoding_pseudoknot
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000545	"The pseudoknots involved in recoding are unique in that, as they play their role as a structure, they are immediately unfolded and their now linear sequence serves as a template for decoding." [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=33937]	6310913	SOFA	SOFA	sequence	8	SO	region	recoding_pseudoknot
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000545	"The pseudoknots involved in recoding are unique in that, as they play their role as a structure, they are immediately unfolded and their now linear sequence serves as a template for decoding." [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=33937]	2928116	SOFA	SOFA	sequence	4	SO	mature_transcript	recoding_pseudoknot
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0000545	"The pseudoknots involved in recoding are unique in that, as they play their role as a structure, they are immediately unfolded and their now linear sequence serves as a template for decoding." [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=33937]	2928117	SOFA	SOFA	sequence	4	SO	transcript_region	recoding_pseudoknot
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000545	"The pseudoknots involved in recoding are unique in that, as they play their role as a structure, they are immediately unfolded and their now linear sequence serves as a template for decoding." [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=33937]	6409695	SOFA	SOFA	sequence	9	SO	sequence_feature	recoding_pseudoknot
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000545	"The pseudoknots involved in recoding are unique in that, as they play their role as a structure, they are immediately unfolded and their now linear sequence serves as a template for decoding." [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=33937]	4001472	SOFA	SOFA	sequence	5	SO	transcript	recoding_pseudoknot
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000545	"The pseudoknots involved in recoding are unique in that, as they play their role as a structure, they are immediately unfolded and their now linear sequence serves as a template for decoding." [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=33937]	4001473	SOFA	SOFA	sequence	5	SO	transcript	recoding_pseudoknot
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000545	"The pseudoknots involved in recoding are unique in that, as they play their role as a structure, they are immediately unfolded and their now linear sequence serves as a template for decoding." [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=33937]	4001474	SOFA	SOFA	sequence	5	SO	biological_region	recoding_pseudoknot
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000545	"The pseudoknots involved in recoding are unique in that, as they play their role as a structure, they are immediately unfolded and their now linear sequence serves as a template for decoding." [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=33937]	4966022	SOFA	SOFA	sequence	6	SO	gene_member_region	recoding_pseudoknot
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000545	"The pseudoknots involved in recoding are unique in that, as they play their role as a structure, they are immediately unfolded and their now linear sequence serves as a template for decoding." [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=33937]	5740963	SOFA	SOFA	sequence	7	SO	biological_region	recoding_pseudoknot
SO:0000546	\N	\N	"" []	SO:0000546	"" []	45492	\N	\N	sequence	0	SO	designed_sequence	designed_sequence
SO:0000351	SO:0000546	\N	"An attribute to decide a sequence of nucleotides, nucleotide analogs, or amino acids that has been designed by an experimenter and which may, or may not, correspond with any natural sequence." [SO:ma]	SO:0000546	"" []	490139	\N	\N	sequence	1	SO	synthetic_sequence	designed_sequence
SO:0000443	SO:0000351	\N	"An attribute to describe the kind of biological sequence." [SO:ke]	SO:0000546	"" []	1072609	\N	\N	sequence	2	SO	polymer_attribute	designed_sequence
SO:0000400	SO:0000443	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000546	"" []	1903648	\N	\N	sequence	3	SO	sequence_attribute	designed_sequence
SO:0000547	\N	\N	"A chromosome generated by recombination between two inversions; there is a duplication at each end of the inversion." [FB:km]	SO:0000547	"A chromosome generated by recombination between two inversions; there is a duplication at each end of the inversion." [FB:km]	45493	\N	\N	sequence	0	SO	inversion_derived_bipartite_duplication	inversion_derived_bipartite_duplication
SO:1000038	SO:0000547	\N	"A duplication that occurred within a chromosome." [SO:ke]	SO:0000547	"A chromosome generated by recombination between two inversions; there is a duplication at each end of the inversion." [FB:km]	490140	\N	\N	sequence	1	SO	intrachromosomal_duplication	inversion_derived_bipartite_duplication
SO:1000028	SO:1000038	\N	"A chromosomal structure variation within a single chromosome." [SO:ke]	SO:0000547	"A chromosome generated by recombination between two inversions; there is a duplication at each end of the inversion." [FB:km]	1072610	\N	\N	sequence	2	SO	intrachromosomal_mutation	inversion_derived_bipartite_duplication
SO:1000037	SO:1000038	\N	"An extra chromosome." [SO:ke]	SO:0000547	"A chromosome generated by recombination between two inversions; there is a duplication at each end of the inversion." [FB:km]	1072611	\N	\N	sequence	2	SO	chromosomal_duplication	inversion_derived_bipartite_duplication
SO:1000183	SO:1000028	\N	"" []	SO:0000547	"A chromosome generated by recombination between two inversions; there is a duplication at each end of the inversion." [FB:km]	1903649	\N	\N	sequence	3	SO	chromosome_structure_variation	inversion_derived_bipartite_duplication
SO:1000183	SO:1000037	\N	"" []	SO:0000547	"A chromosome generated by recombination between two inversions; there is a duplication at each end of the inversion." [FB:km]	1903650	\N	\N	sequence	3	SO	chromosome_structure_variation	inversion_derived_bipartite_duplication
SO:0000240	SO:1000183	\N	"" []	SO:0000547	"A chromosome generated by recombination between two inversions; there is a duplication at each end of the inversion." [FB:km]	2928118	\N	\N	sequence	4	SO	chromosome_variation	inversion_derived_bipartite_duplication
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0000547	"A chromosome generated by recombination between two inversions; there is a duplication at each end of the inversion." [FB:km]	4001475	\N	\N	sequence	5	SO	variant_collection	inversion_derived_bipartite_duplication
SO:0001524	SO:0000240	\N	"" []	SO:0000547	"A chromosome generated by recombination between two inversions; there is a duplication at each end of the inversion." [FB:km]	4001476	\N	\N	sequence	5	SO	chromosomally_aberrant_genome	inversion_derived_bipartite_duplication
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000547	"A chromosome generated by recombination between two inversions; there is a duplication at each end of the inversion." [FB:km]	4966024	\N	\N	sequence	6	SO	sequence_collection	inversion_derived_bipartite_duplication
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0000547	"A chromosome generated by recombination between two inversions; there is a duplication at each end of the inversion." [FB:km]	4966025	\N	\N	sequence	6	SO	variant_genome	inversion_derived_bipartite_duplication
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0000547	"A chromosome generated by recombination between two inversions; there is a duplication at each end of the inversion." [FB:km]	5740964	\N	\N	sequence	7	SO	genome	inversion_derived_bipartite_duplication
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000547	"A chromosome generated by recombination between two inversions; there is a duplication at each end of the inversion." [FB:km]	6310914	\N	\N	sequence	8	SO	sequence_collection	inversion_derived_bipartite_duplication
SO:0000548	\N	\N	"A gene that encodes a transcript that is edited." [SO:xp]	SO:0000548	"A gene that encodes a transcript that is edited." [SO:xp]	45494	\N	\N	sequence	0	SO	gene_with_edited_transcript	gene_with_edited_transcript
SO:0001217	SO:0000548	\N	"" []	SO:0000548	"A gene that encodes a transcript that is edited." [SO:xp]	490141	\N	\N	sequence	1	SO	protein_coding_gene	gene_with_edited_transcript
SO:0000704	SO:0001217	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000548	"A gene that encodes a transcript that is edited." [SO:xp]	1072612	\N	SOFA	sequence	2	SO	gene	gene_with_edited_transcript
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000548	"A gene that encodes a transcript that is edited." [SO:xp]	1903651	SOFA	SOFA	sequence	3	SO	biological_region	gene_with_edited_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000548	"A gene that encodes a transcript that is edited." [SO:xp]	2928119	SOFA	SOFA	sequence	4	SO	region	gene_with_edited_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000548	"A gene that encodes a transcript that is edited." [SO:xp]	4001477	SOFA	SOFA	sequence	5	SO	sequence_feature	gene_with_edited_transcript
SO:0000549	\N	\N	"A chromosome generated by recombination between two inversions; has a duplication at one end and presumed to have a deficiency or duplication at the other end of the inversion." [FB:km]	SO:0000549	"A chromosome generated by recombination between two inversions; has a duplication at one end and presumed to have a deficiency or duplication at the other end of the inversion." [FB:km]	45495	\N	\N	sequence	0	SO	inversion_derived_duplication_plus_aneuploid	inversion_derived_duplication_plus_aneuploid
SO:1000038	SO:0000549	\N	"A duplication that occurred within a chromosome." [SO:ke]	SO:0000549	"A chromosome generated by recombination between two inversions; has a duplication at one end and presumed to have a deficiency or duplication at the other end of the inversion." [FB:km]	490142	\N	\N	sequence	1	SO	intrachromosomal_duplication	inversion_derived_duplication_plus_aneuploid
SO:1000028	SO:1000038	\N	"A chromosomal structure variation within a single chromosome." [SO:ke]	SO:0000549	"A chromosome generated by recombination between two inversions; has a duplication at one end and presumed to have a deficiency or duplication at the other end of the inversion." [FB:km]	1072613	\N	\N	sequence	2	SO	intrachromosomal_mutation	inversion_derived_duplication_plus_aneuploid
SO:1000037	SO:1000038	\N	"An extra chromosome." [SO:ke]	SO:0000549	"A chromosome generated by recombination between two inversions; has a duplication at one end and presumed to have a deficiency or duplication at the other end of the inversion." [FB:km]	1072614	\N	\N	sequence	2	SO	chromosomal_duplication	inversion_derived_duplication_plus_aneuploid
SO:1000183	SO:1000028	\N	"" []	SO:0000549	"A chromosome generated by recombination between two inversions; has a duplication at one end and presumed to have a deficiency or duplication at the other end of the inversion." [FB:km]	1903652	\N	\N	sequence	3	SO	chromosome_structure_variation	inversion_derived_duplication_plus_aneuploid
SO:1000183	SO:1000037	\N	"" []	SO:0000549	"A chromosome generated by recombination between two inversions; has a duplication at one end and presumed to have a deficiency or duplication at the other end of the inversion." [FB:km]	1903653	\N	\N	sequence	3	SO	chromosome_structure_variation	inversion_derived_duplication_plus_aneuploid
SO:0000240	SO:1000183	\N	"" []	SO:0000549	"A chromosome generated by recombination between two inversions; has a duplication at one end and presumed to have a deficiency or duplication at the other end of the inversion." [FB:km]	2928120	\N	\N	sequence	4	SO	chromosome_variation	inversion_derived_duplication_plus_aneuploid
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0000549	"A chromosome generated by recombination between two inversions; has a duplication at one end and presumed to have a deficiency or duplication at the other end of the inversion." [FB:km]	4001478	\N	\N	sequence	5	SO	variant_collection	inversion_derived_duplication_plus_aneuploid
SO:0001524	SO:0000240	\N	"" []	SO:0000549	"A chromosome generated by recombination between two inversions; has a duplication at one end and presumed to have a deficiency or duplication at the other end of the inversion." [FB:km]	4001479	\N	\N	sequence	5	SO	chromosomally_aberrant_genome	inversion_derived_duplication_plus_aneuploid
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000549	"A chromosome generated by recombination between two inversions; has a duplication at one end and presumed to have a deficiency or duplication at the other end of the inversion." [FB:km]	4966026	\N	\N	sequence	6	SO	sequence_collection	inversion_derived_duplication_plus_aneuploid
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0000549	"A chromosome generated by recombination between two inversions; has a duplication at one end and presumed to have a deficiency or duplication at the other end of the inversion." [FB:km]	4966027	\N	\N	sequence	6	SO	variant_genome	inversion_derived_duplication_plus_aneuploid
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0000549	"A chromosome generated by recombination between two inversions; has a duplication at one end and presumed to have a deficiency or duplication at the other end of the inversion." [FB:km]	5740965	\N	\N	sequence	7	SO	genome	inversion_derived_duplication_plus_aneuploid
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000549	"A chromosome generated by recombination between two inversions; has a duplication at one end and presumed to have a deficiency or duplication at the other end of the inversion." [FB:km]	6310915	\N	\N	sequence	8	SO	sequence_collection	inversion_derived_duplication_plus_aneuploid
SO:0000550	\N	\N	"A chromosome structural variation whereby either a chromosome exists in addition to the normal chromosome complement or is lacking." [SO:ke]	SO:0000550	"A chromosome structural variation whereby either a chromosome exists in addition to the normal chromosome complement or is lacking." [SO:ke]	45496	\N	\N	sequence	0	SO	aneuploid_chromosome	aneuploid_chromosome
SO:1000183	SO:0000550	\N	"" []	SO:0000550	"A chromosome structural variation whereby either a chromosome exists in addition to the normal chromosome complement or is lacking." [SO:ke]	490143	\N	\N	sequence	1	SO	chromosome_structure_variation	aneuploid_chromosome
SO:0000240	SO:1000183	\N	"" []	SO:0000550	"A chromosome structural variation whereby either a chromosome exists in addition to the normal chromosome complement or is lacking." [SO:ke]	1072615	\N	\N	sequence	2	SO	chromosome_variation	aneuploid_chromosome
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0000550	"A chromosome structural variation whereby either a chromosome exists in addition to the normal chromosome complement or is lacking." [SO:ke]	1903654	\N	\N	sequence	3	SO	variant_collection	aneuploid_chromosome
SO:0001524	SO:0000240	\N	"" []	SO:0000550	"A chromosome structural variation whereby either a chromosome exists in addition to the normal chromosome complement or is lacking." [SO:ke]	1903655	\N	\N	sequence	3	SO	chromosomally_aberrant_genome	aneuploid_chromosome
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000550	"A chromosome structural variation whereby either a chromosome exists in addition to the normal chromosome complement or is lacking." [SO:ke]	2928121	\N	\N	sequence	4	SO	sequence_collection	aneuploid_chromosome
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0000550	"A chromosome structural variation whereby either a chromosome exists in addition to the normal chromosome complement or is lacking." [SO:ke]	2928122	\N	\N	sequence	4	SO	variant_genome	aneuploid_chromosome
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0000550	"A chromosome structural variation whereby either a chromosome exists in addition to the normal chromosome complement or is lacking." [SO:ke]	4001480	\N	\N	sequence	5	SO	genome	aneuploid_chromosome
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000550	"A chromosome structural variation whereby either a chromosome exists in addition to the normal chromosome complement or is lacking." [SO:ke]	4966028	\N	\N	sequence	6	SO	sequence_collection	aneuploid_chromosome
SO:0000551	\N	SOFA	"The recognition sequence necessary for endonuclease cleavage of an RNA transcript that is followed by polyadenylation; consensus=AATAAA." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000551	"The recognition sequence necessary for endonuclease cleavage of an RNA transcript that is followed by polyadenylation; consensus=AATAAA." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	45497	\N	SOFA	sequence	0	SO	polyA_signal_sequence	polyA_signal_sequence
SO:0001679	SO:0000551	SOFA	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000551	"The recognition sequence necessary for endonuclease cleavage of an RNA transcript that is followed by polyadenylation; consensus=AATAAA." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	490144	SOFA	SOFA	sequence	1	SO	transcription_regulatory_region	polyA_signal_sequence
SO:0005836	SO:0001679	SOFA	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000551	"The recognition sequence necessary for endonuclease cleavage of an RNA transcript that is followed by polyadenylation; consensus=AATAAA." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072616	SOFA	SOFA	sequence	2	SO	regulatory_region	polyA_signal_sequence
SO:0000831	SO:0005836	SOFA	"A region of a gene." [SO:ke]	SO:0000551	"The recognition sequence necessary for endonuclease cleavage of an RNA transcript that is followed by polyadenylation; consensus=AATAAA." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903656	SOFA	SOFA	sequence	3	SO	gene_member_region	polyA_signal_sequence
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000551	"The recognition sequence necessary for endonuclease cleavage of an RNA transcript that is followed by polyadenylation; consensus=AATAAA." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2928123	SOFA	SOFA	sequence	4	SO	biological_region	polyA_signal_sequence
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000551	"The recognition sequence necessary for endonuclease cleavage of an RNA transcript that is followed by polyadenylation; consensus=AATAAA." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4001481	SOFA	SOFA	sequence	5	SO	region	polyA_signal_sequence
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000551	"The recognition sequence necessary for endonuclease cleavage of an RNA transcript that is followed by polyadenylation; consensus=AATAAA." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4966029	SOFA	SOFA	sequence	6	SO	sequence_feature	polyA_signal_sequence
SO:0000552	\N	\N	"A region in the 5' UTR that pairs with the 16S rRNA during formation of the preinitiation complex." [SO:jh]	SO:0000552	"A region in the 5' UTR that pairs with the 16S rRNA during formation of the preinitiation complex." [SO:jh]	45498	\N	\N	sequence	0	SO	Shine_Dalgarno_sequence	Shine_Dalgarno_sequence
SO:0000139	SO:0000552	\N	"Region in mRNA where ribosome assembles." [SO:ke]	SO:0000552	"A region in the 5' UTR that pairs with the 16S rRNA during formation of the preinitiation complex." [SO:jh]	490145	\N	SOFA	sequence	1	SO	ribosome_entry_site	Shine_Dalgarno_sequence
SO:0000204	SO:0000139	\N	"A region at the 5' end of a mature transcript (preceding the initiation codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000552	"A region in the 5' UTR that pairs with the 16S rRNA during formation of the preinitiation complex." [SO:jh]	1072617	SOFA	SOFA	sequence	2	SO	five_prime_UTR	Shine_Dalgarno_sequence
SO:0000836	SO:0000139	\N	"A region of an mRNA." [SO:cb]	SO:0000552	"A region in the 5' UTR that pairs with the 16S rRNA during formation of the preinitiation complex." [SO:jh]	1072618	SOFA	SOFA	sequence	2	SO	mRNA_region	Shine_Dalgarno_sequence
SO:0000203	SO:0000204	\N	"Messenger RNA sequences that are untranslated and lie five prime or three prime to sequences which are translated." [SO:ke]	SO:0000552	"A region in the 5' UTR that pairs with the 16S rRNA during formation of the preinitiation complex." [SO:jh]	1903657	SOFA	SOFA	sequence	3	SO	UTR	Shine_Dalgarno_sequence
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000552	"A region in the 5' UTR that pairs with the 16S rRNA during formation of the preinitiation complex." [SO:jh]	4001482	SOFA	SOFA	sequence	5	SO	mRNA	Shine_Dalgarno_sequence
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:0000552	"A region in the 5' UTR that pairs with the 16S rRNA during formation of the preinitiation complex." [SO:jh]	4001483	SOFA	SOFA	sequence	5	SO	mature_transcript_region	Shine_Dalgarno_sequence
SO:0000836	SO:0000203	\N	"A region of an mRNA." [SO:cb]	SO:0000552	"A region in the 5' UTR that pairs with the 16S rRNA during formation of the preinitiation complex." [SO:jh]	2928124	SOFA	SOFA	sequence	4	SO	mRNA_region	Shine_Dalgarno_sequence
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000552	"A region in the 5' UTR that pairs with the 16S rRNA during formation of the preinitiation complex." [SO:jh]	4132296	SOFA	SOFA	sequence	6	SO	mature_transcript	Shine_Dalgarno_sequence
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0000552	"A region in the 5' UTR that pairs with the 16S rRNA during formation of the preinitiation complex." [SO:jh]	4132297	SOFA	SOFA	sequence	6	SO	transcript_region	Shine_Dalgarno_sequence
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000552	"A region in the 5' UTR that pairs with the 16S rRNA during formation of the preinitiation complex." [SO:jh]	5180684	SOFA	SOFA	sequence	7	SO	transcript	Shine_Dalgarno_sequence
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000552	"A region in the 5' UTR that pairs with the 16S rRNA during formation of the preinitiation complex." [SO:jh]	5180685	SOFA	SOFA	sequence	7	SO	transcript	Shine_Dalgarno_sequence
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000552	"A region in the 5' UTR that pairs with the 16S rRNA during formation of the preinitiation complex." [SO:jh]	5180686	SOFA	SOFA	sequence	7	SO	biological_region	Shine_Dalgarno_sequence
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000552	"A region in the 5' UTR that pairs with the 16S rRNA during formation of the preinitiation complex." [SO:jh]	5996386	SOFA	SOFA	sequence	8	SO	gene_member_region	Shine_Dalgarno_sequence
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000552	"A region in the 5' UTR that pairs with the 16S rRNA during formation of the preinitiation complex." [SO:jh]	6888931	SOFA	SOFA	sequence	10	SO	region	Shine_Dalgarno_sequence
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000552	"A region in the 5' UTR that pairs with the 16S rRNA during formation of the preinitiation complex." [SO:jh]	6550254	SOFA	SOFA	sequence	9	SO	biological_region	Shine_Dalgarno_sequence
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000552	"A region in the 5' UTR that pairs with the 16S rRNA during formation of the preinitiation complex." [SO:jh]	7048470	SOFA	SOFA	sequence	11	SO	sequence_feature	Shine_Dalgarno_sequence
SO:0000553	\N	SOFA	"The site on an RNA transcript to which will be added adenine residues by post-transcriptional polyadenylation. The boundary between the UTR and the polyA sequence." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000553	"The site on an RNA transcript to which will be added adenine residues by post-transcriptional polyadenylation. The boundary between the UTR and the polyA sequence." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	45499	\N	SOFA	sequence	0	SO	polyA_site	polyA_site
SO:0000205	SO:0000553	SOFA	"A region at the 3' end of a mature transcript (following the stop codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000553	"The site on an RNA transcript to which will be added adenine residues by post-transcriptional polyadenylation. The boundary between the UTR and the polyA sequence." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	490146	SOFA	SOFA	sequence	1	SO	three_prime_UTR	polyA_site
SO:0000233	SO:0000553	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000553	"The site on an RNA transcript to which will be added adenine residues by post-transcriptional polyadenylation. The boundary between the UTR and the polyA sequence." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	490147	SOFA	SOFA	sequence	1	SO	mature_transcript	polyA_site
SO:0000699	SO:0000553	SOFA	"A sequence_feature with an extent of zero." [SO:ke]	SO:0000553	"The site on an RNA transcript to which will be added adenine residues by post-transcriptional polyadenylation. The boundary between the UTR and the polyA sequence." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	490148	SOFA	SOFA	sequence	1	SO	junction	polyA_site
SO:0000203	SO:0000205	SOFA	"Messenger RNA sequences that are untranslated and lie five prime or three prime to sequences which are translated." [SO:ke]	SO:0000553	"The site on an RNA transcript to which will be added adenine residues by post-transcriptional polyadenylation. The boundary between the UTR and the polyA sequence." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072619	SOFA	SOFA	sequence	2	SO	UTR	polyA_site
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000553	"The site on an RNA transcript to which will be added adenine residues by post-transcriptional polyadenylation. The boundary between the UTR and the polyA sequence." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4966032	SOFA	SOFA	sequence	6	SO	transcript	polyA_site
SO:0000110	SO:0000699	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000553	"The site on an RNA transcript to which will be added adenine residues by post-transcriptional polyadenylation. The boundary between the UTR and the polyA sequence." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072621	SOFA	SOFA	sequence	2	SO	sequence_feature	polyA_site
SO:0000836	SO:0000203	SOFA	"A region of an mRNA." [SO:cb]	SO:0000553	"The site on an RNA transcript to which will be added adenine residues by post-transcriptional polyadenylation. The boundary between the UTR and the polyA sequence." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903660	SOFA	SOFA	sequence	3	SO	mRNA_region	polyA_site
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000553	"The site on an RNA transcript to which will be added adenine residues by post-transcriptional polyadenylation. The boundary between the UTR and the polyA sequence." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	5028311	SOFA	SOFA	sequence	7	SO	gene_member_region	polyA_site
SO:0000234	SO:0000836	SOFA	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000553	"The site on an RNA transcript to which will be added adenine residues by post-transcriptional polyadenylation. The boundary between the UTR and the polyA sequence." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2928127	SOFA	SOFA	sequence	4	SO	mRNA	polyA_site
SO:0000834	SO:0000836	SOFA	"A region of a mature transcript." [SO:ke]	SO:0000553	"The site on an RNA transcript to which will be added adenine residues by post-transcriptional polyadenylation. The boundary between the UTR and the polyA sequence." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2928128	SOFA	SOFA	sequence	4	SO	mature_transcript_region	polyA_site
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000553	"The site on an RNA transcript to which will be added adenine residues by post-transcriptional polyadenylation. The boundary between the UTR and the polyA sequence." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	5817331	SOFA	SOFA	sequence	8	SO	biological_region	polyA_site
SO:0000233	SO:0000234	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000553	"The site on an RNA transcript to which will be added adenine residues by post-transcriptional polyadenylation. The boundary between the UTR and the polyA sequence." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4001487	SOFA	SOFA	sequence	5	SO	mature_transcript	polyA_site
SO:0000833	SO:0000834	SOFA	"A region of a transcript." [SO:ke]	SO:0000553	"The site on an RNA transcript to which will be added adenine residues by post-transcriptional polyadenylation. The boundary between the UTR and the polyA sequence." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4001488	SOFA	SOFA	sequence	5	SO	transcript_region	polyA_site
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000553	"The site on an RNA transcript to which will be added adenine residues by post-transcriptional polyadenylation. The boundary between the UTR and the polyA sequence." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	6409696	SOFA	SOFA	sequence	9	SO	region	polyA_site
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000553	"The site on an RNA transcript to which will be added adenine residues by post-transcriptional polyadenylation. The boundary between the UTR and the polyA sequence." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4966033	SOFA	SOFA	sequence	6	SO	transcript	polyA_site
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000553	"The site on an RNA transcript to which will be added adenine residues by post-transcriptional polyadenylation. The boundary between the UTR and the polyA sequence." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4966034	SOFA	SOFA	sequence	6	SO	biological_region	polyA_site
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000553	"The site on an RNA transcript to which will be added adenine residues by post-transcriptional polyadenylation. The boundary between the UTR and the polyA sequence." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	6807573	SOFA	SOFA	sequence	10	SO	sequence_feature	polyA_site
SO:0000555	\N	\N	"5' most region of a precursor transcript that is clipped off during processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000555	"5' most region of a precursor transcript that is clipped off during processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	45500	\N	\N	sequence	0	SO	five_prime_clip	five_prime_clip
SO:0000303	SO:0000555	\N	"Part of the primary transcript that is clipped off during processing." [SO:ke]	SO:0000555	"5' most region of a precursor transcript that is clipped off during processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	490149	\N	SOFA	sequence	1	SO	clip	five_prime_clip
SO:0000835	SO:0000303	\N	"A part of a primary transcript." [SO:ke]	SO:0000555	"5' most region of a precursor transcript that is clipped off during processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072622	SOFA	SOFA	sequence	2	SO	primary_transcript_region	five_prime_clip
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000555	"5' most region of a precursor transcript that is clipped off during processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903662	SOFA	SOFA	sequence	3	SO	primary_transcript	five_prime_clip
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0000555	"5' most region of a precursor transcript that is clipped off during processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903663	SOFA	SOFA	sequence	3	SO	transcript_region	five_prime_clip
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000555	"5' most region of a precursor transcript that is clipped off during processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2928130	SOFA	SOFA	sequence	4	SO	transcript	five_prime_clip
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000555	"5' most region of a precursor transcript that is clipped off during processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2928131	SOFA	SOFA	sequence	4	SO	transcript	five_prime_clip
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000555	"5' most region of a precursor transcript that is clipped off during processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2928132	SOFA	SOFA	sequence	4	SO	biological_region	five_prime_clip
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000555	"5' most region of a precursor transcript that is clipped off during processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4001490	SOFA	SOFA	sequence	5	SO	gene_member_region	five_prime_clip
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000555	"5' most region of a precursor transcript that is clipped off during processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	5740969	SOFA	SOFA	sequence	7	SO	region	five_prime_clip
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000555	"5' most region of a precursor transcript that is clipped off during processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4966036	SOFA	SOFA	sequence	6	SO	biological_region	five_prime_clip
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000555	"5' most region of a precursor transcript that is clipped off during processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	5996389	SOFA	SOFA	sequence	8	SO	sequence_feature	five_prime_clip
SO:0000556	\N	\N	"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 5' D-nonamer (SO:0000497), 5' D-spacer (SO:0000498), and 5' D-heptamer (SO:0000396) in 5' of the D-region of a D-gene, or in 5' of the D-region of DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000556	"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 5' D-nonamer (SO:0000497), 5' D-spacer (SO:0000498), and 5' D-heptamer (SO:0000396) in 5' of the D-region of a D-gene, or in 5' of the D-region of DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45501	\N	\N	sequence	0	SO	five_prime_D_recombination_signal_sequence	five_prime_D_recombination_signal_sequence
SO:0000492	SO:0000556	\N	"" []	SO:0000556	"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 5' D-nonamer (SO:0000497), 5' D-spacer (SO:0000498), and 5' D-heptamer (SO:0000396) in 5' of the D-region of a D-gene, or in 5' of the D-region of DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490150	\N	\N	sequence	1	SO	D_gene_recombination_feature	five_prime_D_recombination_signal_sequence
SO:0000939	SO:0000492	\N	"" []	SO:0000556	"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 5' D-nonamer (SO:0000497), 5' D-spacer (SO:0000498), and 5' D-heptamer (SO:0000396) in 5' of the D-region of a D-gene, or in 5' of the D-region of DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072623	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_signal_feature	five_prime_D_recombination_signal_sequence
SO:0000301	SO:0000939	\N	"" []	SO:0000556	"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 5' D-nonamer (SO:0000497), 5' D-spacer (SO:0000498), and 5' D-heptamer (SO:0000396) in 5' of the D-region of a D-gene, or in 5' of the D-region of DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903664	\N	\N	sequence	3	SO	vertebrate_immune_system_gene_recombination_feature	five_prime_D_recombination_signal_sequence
SO:0000300	SO:0000301	\N	"" []	SO:0000556	"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 5' D-nonamer (SO:0000497), 5' D-spacer (SO:0000498), and 5' D-heptamer (SO:0000396) in 5' of the D-region of a D-gene, or in 5' of the D-region of DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928133	\N	\N	sequence	4	SO	recombination_feature_of_rearranged_gene	five_prime_D_recombination_signal_sequence
SO:0000299	SO:0000300	\N	"" []	SO:0000556	"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 5' D-nonamer (SO:0000497), 5' D-spacer (SO:0000498), and 5' D-heptamer (SO:0000396) in 5' of the D-region of a D-gene, or in 5' of the D-region of DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001492	\N	\N	sequence	5	SO	specific_recombination_site	five_prime_D_recombination_signal_sequence
SO:0000669	SO:0000299	\N	"" []	SO:0000556	"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 5' D-nonamer (SO:0000497), 5' D-spacer (SO:0000498), and 5' D-heptamer (SO:0000396) in 5' of the D-region of a D-gene, or in 5' of the D-region of DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966038	\N	\N	sequence	6	SO	sequence_rearrangement_feature	five_prime_D_recombination_signal_sequence
SO:0000298	SO:0000669	\N	"" []	SO:0000556	"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 5' D-nonamer (SO:0000497), 5' D-spacer (SO:0000498), and 5' D-heptamer (SO:0000396) in 5' of the D-region of a D-gene, or in 5' of the D-region of DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740970	\N	\N	sequence	7	SO	recombination_feature	five_prime_D_recombination_signal_sequence
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000556	"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 5' D-nonamer (SO:0000497), 5' D-spacer (SO:0000498), and 5' D-heptamer (SO:0000396) in 5' of the D-region of a D-gene, or in 5' of the D-region of DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310916	\N	SOFA	sequence	8	SO	biological_region	five_prime_D_recombination_signal_sequence
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000556	"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 5' D-nonamer (SO:0000497), 5' D-spacer (SO:0000498), and 5' D-heptamer (SO:0000396) in 5' of the D-region of a D-gene, or in 5' of the D-region of DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699294	SOFA	SOFA	sequence	9	SO	region	five_prime_D_recombination_signal_sequence
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000556	"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 5' D-nonamer (SO:0000497), 5' D-spacer (SO:0000498), and 5' D-heptamer (SO:0000396) in 5' of the D-region of a D-gene, or in 5' of the D-region of DJ-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6948070	SOFA	SOFA	sequence	10	SO	sequence_feature	five_prime_D_recombination_signal_sequence
SO:0000557	\N	\N	"3'-most region of a precursor transcript that is clipped off during processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000557	"3'-most region of a precursor transcript that is clipped off during processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	45502	\N	\N	sequence	0	SO	three_prime_clip	three_prime_clip
SO:0000303	SO:0000557	\N	"Part of the primary transcript that is clipped off during processing." [SO:ke]	SO:0000557	"3'-most region of a precursor transcript that is clipped off during processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	490151	\N	SOFA	sequence	1	SO	clip	three_prime_clip
SO:0000835	SO:0000303	\N	"A part of a primary transcript." [SO:ke]	SO:0000557	"3'-most region of a precursor transcript that is clipped off during processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072624	SOFA	SOFA	sequence	2	SO	primary_transcript_region	three_prime_clip
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000557	"3'-most region of a precursor transcript that is clipped off during processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903665	SOFA	SOFA	sequence	3	SO	primary_transcript	three_prime_clip
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0000557	"3'-most region of a precursor transcript that is clipped off during processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903666	SOFA	SOFA	sequence	3	SO	transcript_region	three_prime_clip
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000557	"3'-most region of a precursor transcript that is clipped off during processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2928134	SOFA	SOFA	sequence	4	SO	transcript	three_prime_clip
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000557	"3'-most region of a precursor transcript that is clipped off during processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2928135	SOFA	SOFA	sequence	4	SO	transcript	three_prime_clip
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000557	"3'-most region of a precursor transcript that is clipped off during processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2928136	SOFA	SOFA	sequence	4	SO	biological_region	three_prime_clip
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000557	"3'-most region of a precursor transcript that is clipped off during processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4001493	SOFA	SOFA	sequence	5	SO	gene_member_region	three_prime_clip
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000557	"3'-most region of a precursor transcript that is clipped off during processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	5740971	SOFA	SOFA	sequence	7	SO	region	three_prime_clip
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000557	"3'-most region of a precursor transcript that is clipped off during processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4966039	SOFA	SOFA	sequence	6	SO	biological_region	three_prime_clip
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000557	"3'-most region of a precursor transcript that is clipped off during processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	5996390	SOFA	SOFA	sequence	8	SO	sequence_feature	three_prime_clip
SO:0000558	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene including more than one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000558	"Genomic DNA of immunoglobulin/T-cell receptor gene including more than one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45503	\N	\N	sequence	0	SO	C_cluster	C_cluster
SO:0000482	SO:0000558	\N	"" []	SO:0000558	"Genomic DNA of immunoglobulin/T-cell receptor gene including more than one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490152	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_gene_cluster	C_cluster
SO:0000301	SO:0000482	\N	"" []	SO:0000558	"Genomic DNA of immunoglobulin/T-cell receptor gene including more than one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072625	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	C_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000558	"Genomic DNA of immunoglobulin/T-cell receptor gene including more than one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903667	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	C_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000558	"Genomic DNA of immunoglobulin/T-cell receptor gene including more than one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928137	\N	\N	sequence	4	SO	specific_recombination_site	C_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000558	"Genomic DNA of immunoglobulin/T-cell receptor gene including more than one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001495	\N	\N	sequence	5	SO	sequence_rearrangement_feature	C_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000558	"Genomic DNA of immunoglobulin/T-cell receptor gene including more than one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966041	\N	\N	sequence	6	SO	recombination_feature	C_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000558	"Genomic DNA of immunoglobulin/T-cell receptor gene including more than one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740972	\N	SOFA	sequence	7	SO	biological_region	C_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000558	"Genomic DNA of immunoglobulin/T-cell receptor gene including more than one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310917	SOFA	SOFA	sequence	8	SO	region	C_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000558	"Genomic DNA of immunoglobulin/T-cell receptor gene including more than one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699295	SOFA	SOFA	sequence	9	SO	sequence_feature	C_cluster
SO:0000559	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one D-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000559	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one D-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45504	\N	\N	sequence	0	SO	D_cluster	D_cluster
SO:0000482	SO:0000559	\N	"" []	SO:0000559	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one D-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490153	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_gene_cluster	D_cluster
SO:0000301	SO:0000482	\N	"" []	SO:0000559	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one D-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072626	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	D_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000559	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one D-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903668	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	D_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000559	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one D-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928138	\N	\N	sequence	4	SO	specific_recombination_site	D_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000559	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one D-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001496	\N	\N	sequence	5	SO	sequence_rearrangement_feature	D_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000559	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one D-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966042	\N	\N	sequence	6	SO	recombination_feature	D_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000559	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one D-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740973	\N	SOFA	sequence	7	SO	biological_region	D_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000559	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one D-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310918	SOFA	SOFA	sequence	8	SO	region	D_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000559	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one D-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699296	SOFA	SOFA	sequence	9	SO	sequence_feature	D_cluster
SO:0000560	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one D-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000560	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one D-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45505	\N	\N	sequence	0	SO	D_J_cluster	D_J_cluster
SO:0000482	SO:0000560	\N	"" []	SO:0000560	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one D-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490154	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_gene_cluster	D_J_cluster
SO:0000301	SO:0000482	\N	"" []	SO:0000560	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one D-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072627	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	D_J_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000560	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one D-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903669	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	D_J_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000560	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one D-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928139	\N	\N	sequence	4	SO	specific_recombination_site	D_J_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000560	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one D-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001497	\N	\N	sequence	5	SO	sequence_rearrangement_feature	D_J_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000560	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one D-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966043	\N	\N	sequence	6	SO	recombination_feature	D_J_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000560	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one D-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740974	\N	SOFA	sequence	7	SO	biological_region	D_J_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000560	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one D-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310919	SOFA	SOFA	sequence	8	SO	region	D_J_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000560	"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one D-gene and one J-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699297	SOFA	SOFA	sequence	9	SO	sequence_feature	D_J_cluster
SO:0000561	\N	\N	"Seven nucleotide recombination site (e.g. CACAGTG), part of V-gene, D-gene or J-gene recombination feature of an immunoglobulin or T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000561	"Seven nucleotide recombination site (e.g. CACAGTG), part of V-gene, D-gene or J-gene recombination feature of an immunoglobulin or T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45506	\N	\N	sequence	0	SO	heptamer_of_recombination_feature_of_vertebrate_immune_system_gene	heptamer_of_recombination_feature_of_vertebrate_immune_system_gene
SO:0000939	SO:0000561	\N	"" []	SO:0000561	"Seven nucleotide recombination site (e.g. CACAGTG), part of V-gene, D-gene or J-gene recombination feature of an immunoglobulin or T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490155	\N	\N	sequence	1	SO	vertebrate_immune_system_gene_recombination_signal_feature	heptamer_of_recombination_feature_of_vertebrate_immune_system_gene
SO:0000301	SO:0000939	\N	"" []	SO:0000561	"Seven nucleotide recombination site (e.g. CACAGTG), part of V-gene, D-gene or J-gene recombination feature of an immunoglobulin or T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072628	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	heptamer_of_recombination_feature_of_vertebrate_immune_system_gene
SO:0000300	SO:0000301	\N	"" []	SO:0000561	"Seven nucleotide recombination site (e.g. CACAGTG), part of V-gene, D-gene or J-gene recombination feature of an immunoglobulin or T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903670	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	heptamer_of_recombination_feature_of_vertebrate_immune_system_gene
SO:0000299	SO:0000300	\N	"" []	SO:0000561	"Seven nucleotide recombination site (e.g. CACAGTG), part of V-gene, D-gene or J-gene recombination feature of an immunoglobulin or T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928140	\N	\N	sequence	4	SO	specific_recombination_site	heptamer_of_recombination_feature_of_vertebrate_immune_system_gene
SO:0000669	SO:0000299	\N	"" []	SO:0000561	"Seven nucleotide recombination site (e.g. CACAGTG), part of V-gene, D-gene or J-gene recombination feature of an immunoglobulin or T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001498	\N	\N	sequence	5	SO	sequence_rearrangement_feature	heptamer_of_recombination_feature_of_vertebrate_immune_system_gene
SO:0000298	SO:0000669	\N	"" []	SO:0000561	"Seven nucleotide recombination site (e.g. CACAGTG), part of V-gene, D-gene or J-gene recombination feature of an immunoglobulin or T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966044	\N	\N	sequence	6	SO	recombination_feature	heptamer_of_recombination_feature_of_vertebrate_immune_system_gene
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000561	"Seven nucleotide recombination site (e.g. CACAGTG), part of V-gene, D-gene or J-gene recombination feature of an immunoglobulin or T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740975	\N	SOFA	sequence	7	SO	biological_region	heptamer_of_recombination_feature_of_vertebrate_immune_system_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000561	"Seven nucleotide recombination site (e.g. CACAGTG), part of V-gene, D-gene or J-gene recombination feature of an immunoglobulin or T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310920	SOFA	SOFA	sequence	8	SO	region	heptamer_of_recombination_feature_of_vertebrate_immune_system_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000561	"Seven nucleotide recombination site (e.g. CACAGTG), part of V-gene, D-gene or J-gene recombination feature of an immunoglobulin or T-cell receptor gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699298	SOFA	SOFA	sequence	9	SO	sequence_feature	heptamer_of_recombination_feature_of_vertebrate_immune_system_gene
SO:0000562	\N	\N	"" []	SO:0000562	"" []	45507	\N	\N	sequence	0	SO	nonamer_of_recombination_feature_of_vertebrate_immune_system_gene	nonamer_of_recombination_feature_of_vertebrate_immune_system_gene
SO:0000939	SO:0000562	\N	"" []	SO:0000562	"" []	490156	\N	\N	sequence	1	SO	vertebrate_immune_system_gene_recombination_signal_feature	nonamer_of_recombination_feature_of_vertebrate_immune_system_gene
SO:0000301	SO:0000939	\N	"" []	SO:0000562	"" []	1072629	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	nonamer_of_recombination_feature_of_vertebrate_immune_system_gene
SO:0000300	SO:0000301	\N	"" []	SO:0000562	"" []	1903671	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	nonamer_of_recombination_feature_of_vertebrate_immune_system_gene
SO:0000299	SO:0000300	\N	"" []	SO:0000562	"" []	2928141	\N	\N	sequence	4	SO	specific_recombination_site	nonamer_of_recombination_feature_of_vertebrate_immune_system_gene
SO:0000669	SO:0000299	\N	"" []	SO:0000562	"" []	4001499	\N	\N	sequence	5	SO	sequence_rearrangement_feature	nonamer_of_recombination_feature_of_vertebrate_immune_system_gene
SO:0000298	SO:0000669	\N	"" []	SO:0000562	"" []	4966045	\N	\N	sequence	6	SO	recombination_feature	nonamer_of_recombination_feature_of_vertebrate_immune_system_gene
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000562	"" []	5740976	\N	SOFA	sequence	7	SO	biological_region	nonamer_of_recombination_feature_of_vertebrate_immune_system_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000562	"" []	6310921	SOFA	SOFA	sequence	8	SO	region	nonamer_of_recombination_feature_of_vertebrate_immune_system_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000562	"" []	6699299	SOFA	SOFA	sequence	9	SO	sequence_feature	nonamer_of_recombination_feature_of_vertebrate_immune_system_gene
SO:0000563	\N	\N	"" []	SO:0000563	"" []	45508	\N	\N	sequence	0	SO	vertebrate_immune_system_gene_recombination_spacer	vertebrate_immune_system_gene_recombination_spacer
SO:0000301	SO:0000563	\N	"" []	SO:0000563	"" []	490157	\N	\N	sequence	1	SO	vertebrate_immune_system_gene_recombination_feature	vertebrate_immune_system_gene_recombination_spacer
SO:0000300	SO:0000301	\N	"" []	SO:0000563	"" []	1072630	\N	\N	sequence	2	SO	recombination_feature_of_rearranged_gene	vertebrate_immune_system_gene_recombination_spacer
SO:0000299	SO:0000300	\N	"" []	SO:0000563	"" []	1903672	\N	\N	sequence	3	SO	specific_recombination_site	vertebrate_immune_system_gene_recombination_spacer
SO:0000669	SO:0000299	\N	"" []	SO:0000563	"" []	2928142	\N	\N	sequence	4	SO	sequence_rearrangement_feature	vertebrate_immune_system_gene_recombination_spacer
SO:0000298	SO:0000669	\N	"" []	SO:0000563	"" []	4001500	\N	\N	sequence	5	SO	recombination_feature	vertebrate_immune_system_gene_recombination_spacer
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000563	"" []	4966046	\N	SOFA	sequence	6	SO	biological_region	vertebrate_immune_system_gene_recombination_spacer
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000563	"" []	5740977	SOFA	SOFA	sequence	7	SO	region	vertebrate_immune_system_gene_recombination_spacer
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000563	"" []	6310922	SOFA	SOFA	sequence	8	SO	sequence_feature	vertebrate_immune_system_gene_recombination_spacer
SO:0000564	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000564	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45509	\N	\N	sequence	0	SO	V_DJ_J_C_cluster	V_DJ_J_C_cluster
SO:0000938	SO:0000564	\N	"" []	SO:0000564	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490158	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	V_DJ_J_C_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000564	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072631	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	V_DJ_J_C_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000564	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903673	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	V_DJ_J_C_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000564	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928143	\N	\N	sequence	4	SO	specific_recombination_site	V_DJ_J_C_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000564	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001501	\N	\N	sequence	5	SO	sequence_rearrangement_feature	V_DJ_J_C_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000564	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966047	\N	\N	sequence	6	SO	recombination_feature	V_DJ_J_C_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000564	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740978	\N	SOFA	sequence	7	SO	biological_region	V_DJ_J_C_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000564	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310923	SOFA	SOFA	sequence	8	SO	region	V_DJ_J_C_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000564	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699300	SOFA	SOFA	sequence	9	SO	sequence_feature	V_DJ_J_C_cluster
SO:0000565	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000565	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45510	\N	\N	sequence	0	SO	V_VDJ_J_C_cluster	V_VDJ_J_C_cluster
SO:0000938	SO:0000565	\N	"" []	SO:0000565	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490159	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	V_VDJ_J_C_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000565	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072632	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	V_VDJ_J_C_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000565	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903674	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	V_VDJ_J_C_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000565	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928144	\N	\N	sequence	4	SO	specific_recombination_site	V_VDJ_J_C_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000565	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001502	\N	\N	sequence	5	SO	sequence_rearrangement_feature	V_VDJ_J_C_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000565	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966048	\N	\N	sequence	6	SO	recombination_feature	V_VDJ_J_C_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000565	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740979	\N	SOFA	sequence	7	SO	biological_region	V_VDJ_J_C_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000565	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310924	SOFA	SOFA	sequence	8	SO	region	V_VDJ_J_C_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000565	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699301	SOFA	SOFA	sequence	9	SO	sequence_feature	V_VDJ_J_C_cluster
SO:0000566	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000566	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45511	\N	\N	sequence	0	SO	V_VJ_J_C_cluster	V_VJ_J_C_cluster
SO:0000938	SO:0000566	\N	"" []	SO:0000566	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490160	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	V_VJ_J_C_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000566	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072633	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	V_VJ_J_C_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000566	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903675	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	V_VJ_J_C_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000566	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928145	\N	\N	sequence	4	SO	specific_recombination_site	V_VJ_J_C_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000566	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001503	\N	\N	sequence	5	SO	sequence_rearrangement_feature	V_VJ_J_C_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000566	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966049	\N	\N	sequence	6	SO	recombination_feature	V_VJ_J_C_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000566	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740980	\N	SOFA	sequence	7	SO	biological_region	V_VJ_J_C_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000566	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310925	SOFA	SOFA	sequence	8	SO	region	V_VJ_J_C_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000566	"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene, one J-gene and one C-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699302	SOFA	SOFA	sequence	9	SO	sequence_feature	V_VJ_J_C_cluster
SO:0000567	\N	\N	"A chromosome may be generated by recombination between two inversions; presumed to have a deficiency or duplication at each end of the inversion." [FB:km]	SO:0000567	"A chromosome may be generated by recombination between two inversions; presumed to have a deficiency or duplication at each end of the inversion." [FB:km]	45512	\N	\N	sequence	0	SO	inversion_derived_aneuploid_chromosome	inversion_derived_aneuploid_chromosome
SO:0000550	SO:0000567	\N	"A chromosome structural variation whereby either a chromosome exists in addition to the normal chromosome complement or is lacking." [SO:ke]	SO:0000567	"A chromosome may be generated by recombination between two inversions; presumed to have a deficiency or duplication at each end of the inversion." [FB:km]	490161	\N	\N	sequence	1	SO	aneuploid_chromosome	inversion_derived_aneuploid_chromosome
SO:1000183	SO:0000550	\N	"" []	SO:0000567	"A chromosome may be generated by recombination between two inversions; presumed to have a deficiency or duplication at each end of the inversion." [FB:km]	1072634	\N	\N	sequence	2	SO	chromosome_structure_variation	inversion_derived_aneuploid_chromosome
SO:0000240	SO:1000183	\N	"" []	SO:0000567	"A chromosome may be generated by recombination between two inversions; presumed to have a deficiency or duplication at each end of the inversion." [FB:km]	1903676	\N	\N	sequence	3	SO	chromosome_variation	inversion_derived_aneuploid_chromosome
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0000567	"A chromosome may be generated by recombination between two inversions; presumed to have a deficiency or duplication at each end of the inversion." [FB:km]	2928146	\N	\N	sequence	4	SO	variant_collection	inversion_derived_aneuploid_chromosome
SO:0001524	SO:0000240	\N	"" []	SO:0000567	"A chromosome may be generated by recombination between two inversions; presumed to have a deficiency or duplication at each end of the inversion." [FB:km]	2928147	\N	\N	sequence	4	SO	chromosomally_aberrant_genome	inversion_derived_aneuploid_chromosome
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000567	"A chromosome may be generated by recombination between two inversions; presumed to have a deficiency or duplication at each end of the inversion." [FB:km]	4001504	\N	\N	sequence	5	SO	sequence_collection	inversion_derived_aneuploid_chromosome
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0000567	"A chromosome may be generated by recombination between two inversions; presumed to have a deficiency or duplication at each end of the inversion." [FB:km]	4001505	\N	\N	sequence	5	SO	variant_genome	inversion_derived_aneuploid_chromosome
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0000567	"A chromosome may be generated by recombination between two inversions; presumed to have a deficiency or duplication at each end of the inversion." [FB:km]	4966050	\N	\N	sequence	6	SO	genome	inversion_derived_aneuploid_chromosome
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000567	"A chromosome may be generated by recombination between two inversions; presumed to have a deficiency or duplication at each end of the inversion." [FB:km]	5740981	\N	\N	sequence	7	SO	sequence_collection	inversion_derived_aneuploid_chromosome
SO:0000568	\N	\N	"An unregulated promoter that allows continuous expression." [SO:ke]	SO:0000568	"An unregulated promoter that allows continuous expression." [SO:ke]	45513	\N	\N	sequence	0	SO	bidirectional_promoter	bidirectional_promoter
SO:0000167	SO:0000568	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0000568	"An unregulated promoter that allows continuous expression." [SO:ke]	490162	\N	SOFA	sequence	1	SO	promoter	bidirectional_promoter
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0000568	"An unregulated promoter that allows continuous expression." [SO:ke]	1072635	SOFA	SOFA	sequence	2	SO	transcriptional_cis_regulatory_region	bidirectional_promoter
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000568	"An unregulated promoter that allows continuous expression." [SO:ke]	1903677	SOFA	SOFA	sequence	3	SO	transcription_regulatory_region	bidirectional_promoter
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000568	"An unregulated promoter that allows continuous expression." [SO:ke]	2928148	SOFA	SOFA	sequence	4	SO	regulatory_region	bidirectional_promoter
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0000568	"An unregulated promoter that allows continuous expression." [SO:ke]	4001506	SOFA	SOFA	sequence	5	SO	gene_member_region	bidirectional_promoter
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000568	"An unregulated promoter that allows continuous expression." [SO:ke]	4966051	SOFA	SOFA	sequence	6	SO	biological_region	bidirectional_promoter
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000568	"An unregulated promoter that allows continuous expression." [SO:ke]	5740982	SOFA	SOFA	sequence	7	SO	region	bidirectional_promoter
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000568	"An unregulated promoter that allows continuous expression." [SO:ke]	6310926	SOFA	SOFA	sequence	8	SO	sequence_feature	bidirectional_promoter
SO:0000569	\N	\N	"An attribute of a feature that occurred as the product of a reverse transcriptase mediated event." [SO:ke]	SO:0000569	"An attribute of a feature that occurred as the product of a reverse transcriptase mediated event." [SO:ke]	45514	\N	\N	sequence	0	SO	retrotransposed	retrotransposed
SO:0000733	SO:0000569	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000569	"An attribute of a feature that occurred as the product of a reverse transcriptase mediated event." [SO:ke]	490163	\N	\N	sequence	1	SO	feature_attribute	retrotransposed
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000569	"An attribute of a feature that occurred as the product of a reverse transcriptase mediated event." [SO:ke]	1072636	\N	\N	sequence	2	SO	sequence_attribute	retrotransposed
SO:0000570	\N	\N	"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 3' D-heptamer (SO:0000493), 3' D-spacer, and 3' D-nonamer (SO:0000494) in 3' of the D-region of a D-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000570	"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 3' D-heptamer (SO:0000493), 3' D-spacer, and 3' D-nonamer (SO:0000494) in 3' of the D-region of a D-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45515	\N	\N	sequence	0	SO	three_prime_D_recombination_signal_sequence	three_prime_D_recombination_signal_sequence
SO:0000492	SO:0000570	\N	"" []	SO:0000570	"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 3' D-heptamer (SO:0000493), 3' D-spacer, and 3' D-nonamer (SO:0000494) in 3' of the D-region of a D-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490164	\N	\N	sequence	1	SO	D_gene_recombination_feature	three_prime_D_recombination_signal_sequence
SO:0000939	SO:0000492	\N	"" []	SO:0000570	"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 3' D-heptamer (SO:0000493), 3' D-spacer, and 3' D-nonamer (SO:0000494) in 3' of the D-region of a D-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072637	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_signal_feature	three_prime_D_recombination_signal_sequence
SO:0000301	SO:0000939	\N	"" []	SO:0000570	"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 3' D-heptamer (SO:0000493), 3' D-spacer, and 3' D-nonamer (SO:0000494) in 3' of the D-region of a D-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903678	\N	\N	sequence	3	SO	vertebrate_immune_system_gene_recombination_feature	three_prime_D_recombination_signal_sequence
SO:0000300	SO:0000301	\N	"" []	SO:0000570	"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 3' D-heptamer (SO:0000493), 3' D-spacer, and 3' D-nonamer (SO:0000494) in 3' of the D-region of a D-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928149	\N	\N	sequence	4	SO	recombination_feature_of_rearranged_gene	three_prime_D_recombination_signal_sequence
SO:0000299	SO:0000300	\N	"" []	SO:0000570	"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 3' D-heptamer (SO:0000493), 3' D-spacer, and 3' D-nonamer (SO:0000494) in 3' of the D-region of a D-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001507	\N	\N	sequence	5	SO	specific_recombination_site	three_prime_D_recombination_signal_sequence
SO:0000669	SO:0000299	\N	"" []	SO:0000570	"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 3' D-heptamer (SO:0000493), 3' D-spacer, and 3' D-nonamer (SO:0000494) in 3' of the D-region of a D-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966052	\N	\N	sequence	6	SO	sequence_rearrangement_feature	three_prime_D_recombination_signal_sequence
SO:0000298	SO:0000669	\N	"" []	SO:0000570	"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 3' D-heptamer (SO:0000493), 3' D-spacer, and 3' D-nonamer (SO:0000494) in 3' of the D-region of a D-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740983	\N	\N	sequence	7	SO	recombination_feature	three_prime_D_recombination_signal_sequence
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000570	"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 3' D-heptamer (SO:0000493), 3' D-spacer, and 3' D-nonamer (SO:0000494) in 3' of the D-region of a D-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310927	\N	SOFA	sequence	8	SO	biological_region	three_prime_D_recombination_signal_sequence
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000570	"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 3' D-heptamer (SO:0000493), 3' D-spacer, and 3' D-nonamer (SO:0000494) in 3' of the D-region of a D-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699303	SOFA	SOFA	sequence	9	SO	region	three_prime_D_recombination_signal_sequence
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000570	"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 3' D-heptamer (SO:0000493), 3' D-spacer, and 3' D-nonamer (SO:0000494) in 3' of the D-region of a D-gene." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6948071	SOFA	SOFA	sequence	10	SO	sequence_feature	three_prime_D_recombination_signal_sequence
SO:0000571	\N	\N	"" []	SO:0000571	"" []	45516	\N	\N	sequence	0	SO	miRNA_encoding	miRNA_encoding
SO:0000011	SO:0000571	\N	"" []	SO:0000571	"" []	490165	\N	\N	sequence	1	SO	non_protein_coding	miRNA_encoding
SO:0000401	SO:0000011	\N	"" []	SO:0000571	"" []	1072638	\N	\N	sequence	2	SO	gene_attribute	miRNA_encoding
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000571	"" []	1903679	\N	\N	sequence	3	SO	feature_attribute	miRNA_encoding
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000571	"" []	2928150	\N	\N	sequence	4	SO	sequence_attribute	miRNA_encoding
SO:0000572	\N	\N	"Genomic DNA of immunoglobulin/T-cell receptor gene in partially rearranged genomic DNA including D-J-region with 5' UTR and 3' UTR, also designated as D-J-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000572	"Genomic DNA of immunoglobulin/T-cell receptor gene in partially rearranged genomic DNA including D-J-region with 5' UTR and 3' UTR, also designated as D-J-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45517	\N	\N	sequence	0	SO	DJ_gene_segment	DJ_gene_segment
SO:0000936	SO:0000572	\N	"" []	SO:0000572	"Genomic DNA of immunoglobulin/T-cell receptor gene in partially rearranged genomic DNA including D-J-region with 5' UTR and 3' UTR, also designated as D-J-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490166	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment	DJ_gene_segment
SO:0000301	SO:0000936	\N	"" []	SO:0000572	"Genomic DNA of immunoglobulin/T-cell receptor gene in partially rearranged genomic DNA including D-J-region with 5' UTR and 3' UTR, also designated as D-J-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072639	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	DJ_gene_segment
SO:0000300	SO:0000301	\N	"" []	SO:0000572	"Genomic DNA of immunoglobulin/T-cell receptor gene in partially rearranged genomic DNA including D-J-region with 5' UTR and 3' UTR, also designated as D-J-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903680	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	DJ_gene_segment
SO:0000299	SO:0000300	\N	"" []	SO:0000572	"Genomic DNA of immunoglobulin/T-cell receptor gene in partially rearranged genomic DNA including D-J-region with 5' UTR and 3' UTR, also designated as D-J-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928151	\N	\N	sequence	4	SO	specific_recombination_site	DJ_gene_segment
SO:0000669	SO:0000299	\N	"" []	SO:0000572	"Genomic DNA of immunoglobulin/T-cell receptor gene in partially rearranged genomic DNA including D-J-region with 5' UTR and 3' UTR, also designated as D-J-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001508	\N	\N	sequence	5	SO	sequence_rearrangement_feature	DJ_gene_segment
SO:0000298	SO:0000669	\N	"" []	SO:0000572	"Genomic DNA of immunoglobulin/T-cell receptor gene in partially rearranged genomic DNA including D-J-region with 5' UTR and 3' UTR, also designated as D-J-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966053	\N	\N	sequence	6	SO	recombination_feature	DJ_gene_segment
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000572	"Genomic DNA of immunoglobulin/T-cell receptor gene in partially rearranged genomic DNA including D-J-region with 5' UTR and 3' UTR, also designated as D-J-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740984	\N	SOFA	sequence	7	SO	biological_region	DJ_gene_segment
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000572	"Genomic DNA of immunoglobulin/T-cell receptor gene in partially rearranged genomic DNA including D-J-region with 5' UTR and 3' UTR, also designated as D-J-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310928	SOFA	SOFA	sequence	8	SO	region	DJ_gene_segment
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000572	"Genomic DNA of immunoglobulin/T-cell receptor gene in partially rearranged genomic DNA including D-J-region with 5' UTR and 3' UTR, also designated as D-J-segment." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699304	SOFA	SOFA	sequence	9	SO	sequence_feature	DJ_gene_segment
SO:0000573	\N	\N	"" []	SO:0000573	"" []	45518	\N	\N	sequence	0	SO	rRNA_encoding	rRNA_encoding
SO:0000011	SO:0000573	\N	"" []	SO:0000573	"" []	490167	\N	\N	sequence	1	SO	non_protein_coding	rRNA_encoding
SO:0000401	SO:0000011	\N	"" []	SO:0000573	"" []	1072640	\N	\N	sequence	2	SO	gene_attribute	rRNA_encoding
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000573	"" []	1903681	\N	\N	sequence	3	SO	feature_attribute	rRNA_encoding
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000573	"" []	2928152	\N	\N	sequence	4	SO	sequence_attribute	rRNA_encoding
SO:0000574	\N	\N	"Rearranged genomic DNA of immunoglobulin/T-cell receptor gene including L-part1, V-intron and V-D-J-exon, with the 5'UTR (SO:0000204) and 3'UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000574	"Rearranged genomic DNA of immunoglobulin/T-cell receptor gene including L-part1, V-intron and V-D-J-exon, with the 5'UTR (SO:0000204) and 3'UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45519	\N	\N	sequence	0	SO	VDJ_gene_segment	VDJ_gene_segment
SO:0000936	SO:0000574	\N	"" []	SO:0000574	"Rearranged genomic DNA of immunoglobulin/T-cell receptor gene including L-part1, V-intron and V-D-J-exon, with the 5'UTR (SO:0000204) and 3'UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490168	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment	VDJ_gene_segment
SO:0000301	SO:0000936	\N	"" []	SO:0000574	"Rearranged genomic DNA of immunoglobulin/T-cell receptor gene including L-part1, V-intron and V-D-J-exon, with the 5'UTR (SO:0000204) and 3'UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072641	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	VDJ_gene_segment
SO:0000300	SO:0000301	\N	"" []	SO:0000574	"Rearranged genomic DNA of immunoglobulin/T-cell receptor gene including L-part1, V-intron and V-D-J-exon, with the 5'UTR (SO:0000204) and 3'UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903682	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	VDJ_gene_segment
SO:0000299	SO:0000300	\N	"" []	SO:0000574	"Rearranged genomic DNA of immunoglobulin/T-cell receptor gene including L-part1, V-intron and V-D-J-exon, with the 5'UTR (SO:0000204) and 3'UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928153	\N	\N	sequence	4	SO	specific_recombination_site	VDJ_gene_segment
SO:0000669	SO:0000299	\N	"" []	SO:0000574	"Rearranged genomic DNA of immunoglobulin/T-cell receptor gene including L-part1, V-intron and V-D-J-exon, with the 5'UTR (SO:0000204) and 3'UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001509	\N	\N	sequence	5	SO	sequence_rearrangement_feature	VDJ_gene_segment
SO:0000298	SO:0000669	\N	"" []	SO:0000574	"Rearranged genomic DNA of immunoglobulin/T-cell receptor gene including L-part1, V-intron and V-D-J-exon, with the 5'UTR (SO:0000204) and 3'UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966054	\N	\N	sequence	6	SO	recombination_feature	VDJ_gene_segment
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000574	"Rearranged genomic DNA of immunoglobulin/T-cell receptor gene including L-part1, V-intron and V-D-J-exon, with the 5'UTR (SO:0000204) and 3'UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740985	\N	SOFA	sequence	7	SO	biological_region	VDJ_gene_segment
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000574	"Rearranged genomic DNA of immunoglobulin/T-cell receptor gene including L-part1, V-intron and V-D-J-exon, with the 5'UTR (SO:0000204) and 3'UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310929	SOFA	SOFA	sequence	8	SO	region	VDJ_gene_segment
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000574	"Rearranged genomic DNA of immunoglobulin/T-cell receptor gene including L-part1, V-intron and V-D-J-exon, with the 5'UTR (SO:0000204) and 3'UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699305	SOFA	SOFA	sequence	9	SO	sequence_feature	VDJ_gene_segment
SO:0000575	\N	\N	"" []	SO:0000575	"" []	45520	\N	\N	sequence	0	SO	scRNA_encoding	scRNA_encoding
SO:0000011	SO:0000575	\N	"" []	SO:0000575	"" []	490169	\N	\N	sequence	1	SO	non_protein_coding	scRNA_encoding
SO:0000401	SO:0000011	\N	"" []	SO:0000575	"" []	1072642	\N	\N	sequence	2	SO	gene_attribute	scRNA_encoding
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000575	"" []	1903683	\N	\N	sequence	3	SO	feature_attribute	scRNA_encoding
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000575	"" []	2928154	\N	\N	sequence	4	SO	sequence_attribute	scRNA_encoding
SO:0000576	\N	\N	"Rearranged genomic DNA of immunoglobulin/T-cell receptor gene including L-part1, V-intron and V-J-exon, with the 5'UTR (SO:0000204) and 3'UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	SO:0000576	"Rearranged genomic DNA of immunoglobulin/T-cell receptor gene including L-part1, V-intron and V-J-exon, with the 5'UTR (SO:0000204) and 3'UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	45521	\N	\N	sequence	0	SO	VJ_gene_segment	VJ_gene_segment
SO:0000936	SO:0000576	\N	"" []	SO:0000576	"Rearranged genomic DNA of immunoglobulin/T-cell receptor gene including L-part1, V-intron and V-J-exon, with the 5'UTR (SO:0000204) and 3'UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	490170	\N	\N	sequence	1	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment	VJ_gene_segment
SO:0000301	SO:0000936	\N	"" []	SO:0000576	"Rearranged genomic DNA of immunoglobulin/T-cell receptor gene including L-part1, V-intron and V-J-exon, with the 5'UTR (SO:0000204) and 3'UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1072643	\N	\N	sequence	2	SO	vertebrate_immune_system_gene_recombination_feature	VJ_gene_segment
SO:0000300	SO:0000301	\N	"" []	SO:0000576	"Rearranged genomic DNA of immunoglobulin/T-cell receptor gene including L-part1, V-intron and V-J-exon, with the 5'UTR (SO:0000204) and 3'UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	1903684	\N	\N	sequence	3	SO	recombination_feature_of_rearranged_gene	VJ_gene_segment
SO:0000299	SO:0000300	\N	"" []	SO:0000576	"Rearranged genomic DNA of immunoglobulin/T-cell receptor gene including L-part1, V-intron and V-J-exon, with the 5'UTR (SO:0000204) and 3'UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	2928155	\N	\N	sequence	4	SO	specific_recombination_site	VJ_gene_segment
SO:0000669	SO:0000299	\N	"" []	SO:0000576	"Rearranged genomic DNA of immunoglobulin/T-cell receptor gene including L-part1, V-intron and V-J-exon, with the 5'UTR (SO:0000204) and 3'UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4001510	\N	\N	sequence	5	SO	sequence_rearrangement_feature	VJ_gene_segment
SO:0000298	SO:0000669	\N	"" []	SO:0000576	"Rearranged genomic DNA of immunoglobulin/T-cell receptor gene including L-part1, V-intron and V-J-exon, with the 5'UTR (SO:0000204) and 3'UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	4966055	\N	\N	sequence	6	SO	recombination_feature	VJ_gene_segment
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000576	"Rearranged genomic DNA of immunoglobulin/T-cell receptor gene including L-part1, V-intron and V-J-exon, with the 5'UTR (SO:0000204) and 3'UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	5740986	\N	SOFA	sequence	7	SO	biological_region	VJ_gene_segment
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000576	"Rearranged genomic DNA of immunoglobulin/T-cell receptor gene including L-part1, V-intron and V-J-exon, with the 5'UTR (SO:0000204) and 3'UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6310930	SOFA	SOFA	sequence	8	SO	region	VJ_gene_segment
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000576	"Rearranged genomic DNA of immunoglobulin/T-cell receptor gene including L-part1, V-intron and V-J-exon, with the 5'UTR (SO:0000204) and 3'UTR (SO:0000205)." [http://www.imgt.org/cgi-bin/IMGTlect.jv?query=7#]	6699306	SOFA	SOFA	sequence	9	SO	sequence_feature	VJ_gene_segment
SO:0000577	\N	SOFA	"A region of chromosome where the spindle fibers attach during mitosis and meiosis." [SO:ke]	SO:0000577	"A region of chromosome where the spindle fibers attach during mitosis and meiosis." [SO:ke]	45522	\N	SOFA	sequence	0	SO	centromere	centromere
SO:0000628	SO:0000577	SOFA	"" []	SO:0000577	"A region of chromosome where the spindle fibers attach during mitosis and meiosis." [SO:ke]	490171	SOFA	SOFA	sequence	1	SO	chromosomal_structural_element	centromere
SO:0000830	SO:0000628	SOFA	"A region of a chromosome." [SO:ke]	SO:0000577	"A region of chromosome where the spindle fibers attach during mitosis and meiosis." [SO:ke]	1072644	SOFA	SOFA	sequence	2	SO	chromosome_part	centromere
SO:0000340	SO:0000830	SOFA	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000577	"A region of chromosome where the spindle fibers attach during mitosis and meiosis." [SO:ke]	1903685	SOFA	SOFA	sequence	3	SO	chromosome	centromere
SO:0001411	SO:0000830	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000577	"A region of chromosome where the spindle fibers attach during mitosis and meiosis." [SO:ke]	1903686	SOFA	SOFA	sequence	3	SO	biological_region	centromere
SO:0001235	SO:0000340	SOFA	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000577	"A region of chromosome where the spindle fibers attach during mitosis and meiosis." [SO:ke]	2928156	SOFA	SOFA	sequence	4	SO	replicon	centromere
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000577	"A region of chromosome where the spindle fibers attach during mitosis and meiosis." [SO:ke]	4966056	SOFA	SOFA	sequence	6	SO	region	centromere
SO:0001411	SO:0001235	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000577	"A region of chromosome where the spindle fibers attach during mitosis and meiosis." [SO:ke]	4001511	SOFA	SOFA	sequence	5	SO	biological_region	centromere
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000577	"A region of chromosome where the spindle fibers attach during mitosis and meiosis." [SO:ke]	5180687	SOFA	SOFA	sequence	7	SO	sequence_feature	centromere
SO:0000578	\N	\N	"" []	SO:0000578	"" []	45523	\N	\N	sequence	0	SO	snoRNA_encoding	snoRNA_encoding
SO:0000011	SO:0000578	\N	"" []	SO:0000578	"" []	490172	\N	\N	sequence	1	SO	non_protein_coding	snoRNA_encoding
SO:0000401	SO:0000011	\N	"" []	SO:0000578	"" []	1072645	\N	\N	sequence	2	SO	gene_attribute	snoRNA_encoding
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000578	"" []	1903687	\N	\N	sequence	3	SO	feature_attribute	snoRNA_encoding
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000578	"" []	2928158	\N	\N	sequence	4	SO	sequence_attribute	snoRNA_encoding
SO:0000579	\N	\N	"A locatable feature on a transcript that is edited." [SO:ma]	SO:0000579	"A locatable feature on a transcript that is edited." [SO:ma]	45524	\N	\N	sequence	0	SO	edited_transcript_feature	edited_transcript_feature
SO:0000833	SO:0000579	\N	"A region of a transcript." [SO:ke]	SO:0000579	"A locatable feature on a transcript that is edited." [SO:ma]	490173	\N	SOFA	sequence	1	SO	transcript_region	edited_transcript_feature
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000579	"A locatable feature on a transcript that is edited." [SO:ma]	1072646	SOFA	SOFA	sequence	2	SO	transcript	edited_transcript_feature
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000579	"A locatable feature on a transcript that is edited." [SO:ma]	1072647	SOFA	SOFA	sequence	2	SO	biological_region	edited_transcript_feature
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000579	"A locatable feature on a transcript that is edited." [SO:ma]	1903688	SOFA	SOFA	sequence	3	SO	gene_member_region	edited_transcript_feature
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000579	"A locatable feature on a transcript that is edited." [SO:ma]	4001513	SOFA	SOFA	sequence	5	SO	region	edited_transcript_feature
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000579	"A locatable feature on a transcript that is edited." [SO:ma]	2928159	SOFA	SOFA	sequence	4	SO	biological_region	edited_transcript_feature
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000579	"A locatable feature on a transcript that is edited." [SO:ma]	4132298	SOFA	SOFA	sequence	6	SO	sequence_feature	edited_transcript_feature
SO:0000580	\N	\N	"A primary transcript encoding a methylation guide small nucleolar RNA." [SO:ke]	SO:0000580	"A primary transcript encoding a methylation guide small nucleolar RNA." [SO:ke]	45525	\N	\N	sequence	0	SO	methylation_guide_snoRNA_primary_transcript	methylation_guide_snoRNA_primary_transcript
SO:0000232	SO:0000580	\N	"A primary transcript encoding a small nucleolar mRNA (SO:0000275)." [SO:ke]	SO:0000580	"A primary transcript encoding a methylation guide small nucleolar RNA." [SO:ke]	490174	\N	\N	sequence	1	SO	snoRNA_primary_transcript	methylation_guide_snoRNA_primary_transcript
SO:0000483	SO:0000232	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000580	"A primary transcript encoding a methylation guide small nucleolar RNA." [SO:ke]	1072648	\N	SOFA	sequence	2	SO	nc_primary_transcript	methylation_guide_snoRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000580	"A primary transcript encoding a methylation guide small nucleolar RNA." [SO:ke]	1903690	SOFA	SOFA	sequence	3	SO	primary_transcript	methylation_guide_snoRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000580	"A primary transcript encoding a methylation guide small nucleolar RNA." [SO:ke]	2928161	SOFA	SOFA	sequence	4	SO	transcript	methylation_guide_snoRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000580	"A primary transcript encoding a methylation guide small nucleolar RNA." [SO:ke]	4001514	SOFA	SOFA	sequence	5	SO	gene_member_region	methylation_guide_snoRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000580	"A primary transcript encoding a methylation guide small nucleolar RNA." [SO:ke]	4966057	SOFA	SOFA	sequence	6	SO	biological_region	methylation_guide_snoRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000580	"A primary transcript encoding a methylation guide small nucleolar RNA." [SO:ke]	5740987	SOFA	SOFA	sequence	7	SO	region	methylation_guide_snoRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000580	"A primary transcript encoding a methylation guide small nucleolar RNA." [SO:ke]	6310931	SOFA	SOFA	sequence	8	SO	sequence_feature	methylation_guide_snoRNA_primary_transcript
SO:0000581	\N	SOFA	"A structure consisting of a 7-methylguanosine in 5'-5' triphosphate linkage with the first nucleotide of an mRNA. It is added post-transcriptionally, and is not encoded in the DNA." [http://seqcore.brcf.med.umich.edu/doc/educ/dnapr/mbglossary/mbgloss.html]	SO:0000581	"A structure consisting of a 7-methylguanosine in 5'-5' triphosphate linkage with the first nucleotide of an mRNA. It is added post-transcriptionally, and is not encoded in the DNA." [http://seqcore.brcf.med.umich.edu/doc/educ/dnapr/mbglossary/mbgloss.html]	45526	\N	SOFA	sequence	0	SO	cap	cap
SO:0001411	SO:0000581	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000581	"A structure consisting of a 7-methylguanosine in 5'-5' triphosphate linkage with the first nucleotide of an mRNA. It is added post-transcriptionally, and is not encoded in the DNA." [http://seqcore.brcf.med.umich.edu/doc/educ/dnapr/mbglossary/mbgloss.html]	490175	SOFA	SOFA	sequence	1	SO	biological_region	cap
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000581	"A structure consisting of a 7-methylguanosine in 5'-5' triphosphate linkage with the first nucleotide of an mRNA. It is added post-transcriptionally, and is not encoded in the DNA." [http://seqcore.brcf.med.umich.edu/doc/educ/dnapr/mbglossary/mbgloss.html]	1072649	SOFA	SOFA	sequence	2	SO	region	cap
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000581	"A structure consisting of a 7-methylguanosine in 5'-5' triphosphate linkage with the first nucleotide of an mRNA. It is added post-transcriptionally, and is not encoded in the DNA." [http://seqcore.brcf.med.umich.edu/doc/educ/dnapr/mbglossary/mbgloss.html]	1903691	SOFA	SOFA	sequence	3	SO	sequence_feature	cap
SO:0000582	\N	\N	"A primary transcript encoding an rRNA cleavage snoRNA." [SO:ke]	SO:0000582	"A primary transcript encoding an rRNA cleavage snoRNA." [SO:ke]	45527	\N	\N	sequence	0	SO	rRNA_cleavage_snoRNA_primary_transcript	rRNA_cleavage_snoRNA_primary_transcript
SO:0000232	SO:0000582	\N	"A primary transcript encoding a small nucleolar mRNA (SO:0000275)." [SO:ke]	SO:0000582	"A primary transcript encoding an rRNA cleavage snoRNA." [SO:ke]	490176	\N	\N	sequence	1	SO	snoRNA_primary_transcript	rRNA_cleavage_snoRNA_primary_transcript
SO:0000483	SO:0000232	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000582	"A primary transcript encoding an rRNA cleavage snoRNA." [SO:ke]	1072650	\N	SOFA	sequence	2	SO	nc_primary_transcript	rRNA_cleavage_snoRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000582	"A primary transcript encoding an rRNA cleavage snoRNA." [SO:ke]	1903692	SOFA	SOFA	sequence	3	SO	primary_transcript	rRNA_cleavage_snoRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000582	"A primary transcript encoding an rRNA cleavage snoRNA." [SO:ke]	2928162	SOFA	SOFA	sequence	4	SO	transcript	rRNA_cleavage_snoRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000582	"A primary transcript encoding an rRNA cleavage snoRNA." [SO:ke]	4001515	SOFA	SOFA	sequence	5	SO	gene_member_region	rRNA_cleavage_snoRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000582	"A primary transcript encoding an rRNA cleavage snoRNA." [SO:ke]	4966058	SOFA	SOFA	sequence	6	SO	biological_region	rRNA_cleavage_snoRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000582	"A primary transcript encoding an rRNA cleavage snoRNA." [SO:ke]	5740988	SOFA	SOFA	sequence	7	SO	region	rRNA_cleavage_snoRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000582	"A primary transcript encoding an rRNA cleavage snoRNA." [SO:ke]	6310932	SOFA	SOFA	sequence	8	SO	sequence_feature	rRNA_cleavage_snoRNA_primary_transcript
SO:0000583	\N	\N	"The region of a transcript that will be edited." [http://dna.kdna.ucla.edu/rna/index.aspx]	SO:0000583	"The region of a transcript that will be edited." [http://dna.kdna.ucla.edu/rna/index.aspx]	45528	\N	\N	sequence	0	SO	pre_edited_region	pre_edited_region
SO:0000579	SO:0000583	\N	"A locatable feature on a transcript that is edited." [SO:ma]	SO:0000583	"The region of a transcript that will be edited." [http://dna.kdna.ucla.edu/rna/index.aspx]	490177	\N	\N	sequence	1	SO	edited_transcript_feature	pre_edited_region
SO:0000833	SO:0000579	\N	"A region of a transcript." [SO:ke]	SO:0000583	"The region of a transcript that will be edited." [http://dna.kdna.ucla.edu/rna/index.aspx]	1072651	\N	SOFA	sequence	2	SO	transcript_region	pre_edited_region
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000583	"The region of a transcript that will be edited." [http://dna.kdna.ucla.edu/rna/index.aspx]	1903693	SOFA	SOFA	sequence	3	SO	transcript	pre_edited_region
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000583	"The region of a transcript that will be edited." [http://dna.kdna.ucla.edu/rna/index.aspx]	1903694	SOFA	SOFA	sequence	3	SO	biological_region	pre_edited_region
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000583	"The region of a transcript that will be edited." [http://dna.kdna.ucla.edu/rna/index.aspx]	2928163	SOFA	SOFA	sequence	4	SO	gene_member_region	pre_edited_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000583	"The region of a transcript that will be edited." [http://dna.kdna.ucla.edu/rna/index.aspx]	4966059	SOFA	SOFA	sequence	6	SO	region	pre_edited_region
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000583	"The region of a transcript that will be edited." [http://dna.kdna.ucla.edu/rna/index.aspx]	4001516	SOFA	SOFA	sequence	5	SO	biological_region	pre_edited_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000583	"The region of a transcript that will be edited." [http://dna.kdna.ucla.edu/rna/index.aspx]	5180688	SOFA	SOFA	sequence	7	SO	sequence_feature	pre_edited_region
SO:0000584	\N	\N	"A tmRNA liberates a mRNA from a stalled ribosome. To accomplish this part of the tmRNA is used as a reading frame that ends in a translation stop signal. The broken mRNA is replaced in the ribosome by the tmRNA and translation of the tmRNA leads to addition of a proteolysis tag to the incomplete protein enabling recognition by a protease. Recently a number of permuted tmRNAs genes have been found encoded in two parts. TmRNAs have been identified in eubacteria and some chloroplasts but are absent from archeal and Eukaryote nuclear genomes." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00023]	SO:0000584	"A tmRNA liberates a mRNA from a stalled ribosome. To accomplish this part of the tmRNA is used as a reading frame that ends in a translation stop signal. The broken mRNA is replaced in the ribosome by the tmRNA and translation of the tmRNA leads to addition of a proteolysis tag to the incomplete protein enabling recognition by a protease. Recently a number of permuted tmRNAs genes have been found encoded in two parts. TmRNAs have been identified in eubacteria and some chloroplasts but are absent from archeal and Eukaryote nuclear genomes." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00023]	45529	\N	\N	sequence	0	SO	tmRNA	tmRNA
SO:0000370	SO:0000584	\N	"A non-coding RNA less than 200 nucleotides long, usually with a specific secondary structure, that acts to regulate gene expression. These include short ncRNAs such as piRNA, miRNA and siRNAs (among others)." [PMID:28541282, PomBase:al, SO:ma]	SO:0000584	"A tmRNA liberates a mRNA from a stalled ribosome. To accomplish this part of the tmRNA is used as a reading frame that ends in a translation stop signal. The broken mRNA is replaced in the ribosome by the tmRNA and translation of the tmRNA leads to addition of a proteolysis tag to the incomplete protein enabling recognition by a protease. Recently a number of permuted tmRNAs genes have been found encoded in two parts. TmRNAs have been identified in eubacteria and some chloroplasts but are absent from archeal and Eukaryote nuclear genomes." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00023]	490178	\N	SOFA	sequence	1	SO	small_regulatory_ncRNA	tmRNA
SO:0000655	SO:0000370	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000584	"A tmRNA liberates a mRNA from a stalled ribosome. To accomplish this part of the tmRNA is used as a reading frame that ends in a translation stop signal. The broken mRNA is replaced in the ribosome by the tmRNA and translation of the tmRNA leads to addition of a proteolysis tag to the incomplete protein enabling recognition by a protease. Recently a number of permuted tmRNAs genes have been found encoded in two parts. TmRNAs have been identified in eubacteria and some chloroplasts but are absent from archeal and Eukaryote nuclear genomes." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00023]	1072652	SOFA	SOFA	sequence	2	SO	ncRNA	tmRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000584	"A tmRNA liberates a mRNA from a stalled ribosome. To accomplish this part of the tmRNA is used as a reading frame that ends in a translation stop signal. The broken mRNA is replaced in the ribosome by the tmRNA and translation of the tmRNA leads to addition of a proteolysis tag to the incomplete protein enabling recognition by a protease. Recently a number of permuted tmRNAs genes have been found encoded in two parts. TmRNAs have been identified in eubacteria and some chloroplasts but are absent from archeal and Eukaryote nuclear genomes." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00023]	1903695	SOFA	SOFA	sequence	3	SO	mature_transcript	tmRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000584	"A tmRNA liberates a mRNA from a stalled ribosome. To accomplish this part of the tmRNA is used as a reading frame that ends in a translation stop signal. The broken mRNA is replaced in the ribosome by the tmRNA and translation of the tmRNA leads to addition of a proteolysis tag to the incomplete protein enabling recognition by a protease. Recently a number of permuted tmRNAs genes have been found encoded in two parts. TmRNAs have been identified in eubacteria and some chloroplasts but are absent from archeal and Eukaryote nuclear genomes." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00023]	2928165	SOFA	SOFA	sequence	4	SO	transcript	tmRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000584	"A tmRNA liberates a mRNA from a stalled ribosome. To accomplish this part of the tmRNA is used as a reading frame that ends in a translation stop signal. The broken mRNA is replaced in the ribosome by the tmRNA and translation of the tmRNA leads to addition of a proteolysis tag to the incomplete protein enabling recognition by a protease. Recently a number of permuted tmRNAs genes have been found encoded in two parts. TmRNAs have been identified in eubacteria and some chloroplasts but are absent from archeal and Eukaryote nuclear genomes." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00023]	4001518	SOFA	SOFA	sequence	5	SO	gene_member_region	tmRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000584	"A tmRNA liberates a mRNA from a stalled ribosome. To accomplish this part of the tmRNA is used as a reading frame that ends in a translation stop signal. The broken mRNA is replaced in the ribosome by the tmRNA and translation of the tmRNA leads to addition of a proteolysis tag to the incomplete protein enabling recognition by a protease. Recently a number of permuted tmRNAs genes have been found encoded in two parts. TmRNAs have been identified in eubacteria and some chloroplasts but are absent from archeal and Eukaryote nuclear genomes." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00023]	4966060	SOFA	SOFA	sequence	6	SO	biological_region	tmRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000584	"A tmRNA liberates a mRNA from a stalled ribosome. To accomplish this part of the tmRNA is used as a reading frame that ends in a translation stop signal. The broken mRNA is replaced in the ribosome by the tmRNA and translation of the tmRNA leads to addition of a proteolysis tag to the incomplete protein enabling recognition by a protease. Recently a number of permuted tmRNAs genes have been found encoded in two parts. TmRNAs have been identified in eubacteria and some chloroplasts but are absent from archeal and Eukaryote nuclear genomes." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00023]	5740989	SOFA	SOFA	sequence	7	SO	region	tmRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000584	"A tmRNA liberates a mRNA from a stalled ribosome. To accomplish this part of the tmRNA is used as a reading frame that ends in a translation stop signal. The broken mRNA is replaced in the ribosome by the tmRNA and translation of the tmRNA leads to addition of a proteolysis tag to the incomplete protein enabling recognition by a protease. Recently a number of permuted tmRNAs genes have been found encoded in two parts. TmRNAs have been identified in eubacteria and some chloroplasts but are absent from archeal and Eukaryote nuclear genomes." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00023]	6310933	SOFA	SOFA	sequence	8	SO	sequence_feature	tmRNA
SO:0000585	\N	\N	"" []	SO:0000585	"" []	45530	\N	\N	sequence	0	SO	C_D_box_snoRNA_encoding	C_D_box_snoRNA_encoding
SO:0000578	SO:0000585	\N	"" []	SO:0000585	"" []	490179	\N	\N	sequence	1	SO	snoRNA_encoding	C_D_box_snoRNA_encoding
SO:0000011	SO:0000578	\N	"" []	SO:0000585	"" []	1072653	\N	\N	sequence	2	SO	non_protein_coding	C_D_box_snoRNA_encoding
SO:0000401	SO:0000011	\N	"" []	SO:0000585	"" []	1903696	\N	\N	sequence	3	SO	gene_attribute	C_D_box_snoRNA_encoding
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000585	"" []	2928166	\N	\N	sequence	4	SO	feature_attribute	C_D_box_snoRNA_encoding
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000585	"" []	4001519	\N	\N	sequence	5	SO	sequence_attribute	C_D_box_snoRNA_encoding
SO:0000586	\N	\N	"A primary transcript encoding a tmRNA (SO:0000584)." [SO:ke]	SO:0000586	"A primary transcript encoding a tmRNA (SO:0000584)." [SO:ke]	45531	\N	\N	sequence	0	SO	tmRNA_primary_transcript	tmRNA_primary_transcript
SO:0000483	SO:0000586	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000586	"A primary transcript encoding a tmRNA (SO:0000584)." [SO:ke]	490180	\N	SOFA	sequence	1	SO	nc_primary_transcript	tmRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000586	"A primary transcript encoding a tmRNA (SO:0000584)." [SO:ke]	1072654	SOFA	SOFA	sequence	2	SO	primary_transcript	tmRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000586	"A primary transcript encoding a tmRNA (SO:0000584)." [SO:ke]	1903697	SOFA	SOFA	sequence	3	SO	transcript	tmRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000586	"A primary transcript encoding a tmRNA (SO:0000584)." [SO:ke]	2928167	SOFA	SOFA	sequence	4	SO	gene_member_region	tmRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000586	"A primary transcript encoding a tmRNA (SO:0000584)." [SO:ke]	4001520	SOFA	SOFA	sequence	5	SO	biological_region	tmRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000586	"A primary transcript encoding a tmRNA (SO:0000584)." [SO:ke]	4966061	SOFA	SOFA	sequence	6	SO	region	tmRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000586	"A primary transcript encoding a tmRNA (SO:0000584)." [SO:ke]	5740990	SOFA	SOFA	sequence	7	SO	sequence_feature	tmRNA_primary_transcript
SO:0000587	\N	SOFA	"Group I catalytic introns are large self-splicing ribozymes. They catalyze their own excision from mRNA, tRNA and rRNA precursors in a wide range of organisms. The core secondary structure consists of 9 paired regions (P1-P9). These fold to essentially two domains, the P4-P6 domain (formed from the stacking of P5, P4, P6 and P6a helices) and the P3-P9 domain (formed from the P8, P3, P7 and P9 helices). Group I catalytic introns often have long ORFs inserted in loop regions." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00028]	SO:0000587	"Group I catalytic introns are large self-splicing ribozymes. They catalyze their own excision from mRNA, tRNA and rRNA precursors in a wide range of organisms. The core secondary structure consists of 9 paired regions (P1-P9). These fold to essentially two domains, the P4-P6 domain (formed from the stacking of P5, P4, P6 and P6a helices) and the P3-P9 domain (formed from the P8, P3, P7 and P9 helices). Group I catalytic introns often have long ORFs inserted in loop regions." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00028]	45532	\N	SOFA	sequence	0	SO	group_I_intron	group_I_intron
SO:0000588	SO:0000587	SOFA	"A self spliced intron." [SO:ke]	SO:0000587	"Group I catalytic introns are large self-splicing ribozymes. They catalyze their own excision from mRNA, tRNA and rRNA precursors in a wide range of organisms. The core secondary structure consists of 9 paired regions (P1-P9). These fold to essentially two domains, the P4-P6 domain (formed from the stacking of P5, P4, P6 and P6a helices) and the P3-P9 domain (formed from the P8, P3, P7 and P9 helices). Group I catalytic introns often have long ORFs inserted in loop regions." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00028]	490181	SOFA	SOFA	sequence	1	SO	autocatalytically_spliced_intron	group_I_intron
SO:0000188	SO:0000588	SOFA	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000587	"Group I catalytic introns are large self-splicing ribozymes. They catalyze their own excision from mRNA, tRNA and rRNA precursors in a wide range of organisms. The core secondary structure consists of 9 paired regions (P1-P9). These fold to essentially two domains, the P4-P6 domain (formed from the stacking of P5, P4, P6 and P6a helices) and the P3-P9 domain (formed from the P8, P3, P7 and P9 helices). Group I catalytic introns often have long ORFs inserted in loop regions." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00028]	1072655	SOFA	SOFA	sequence	2	SO	intron	group_I_intron
SO:0000835	SO:0000188	SOFA	"A part of a primary transcript." [SO:ke]	SO:0000587	"Group I catalytic introns are large self-splicing ribozymes. They catalyze their own excision from mRNA, tRNA and rRNA precursors in a wide range of organisms. The core secondary structure consists of 9 paired regions (P1-P9). These fold to essentially two domains, the P4-P6 domain (formed from the stacking of P5, P4, P6 and P6a helices) and the P3-P9 domain (formed from the P8, P3, P7 and P9 helices). Group I catalytic introns often have long ORFs inserted in loop regions." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00028]	1903698	SOFA	SOFA	sequence	3	SO	primary_transcript_region	group_I_intron
SO:0000185	SO:0000835	SOFA	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000587	"Group I catalytic introns are large self-splicing ribozymes. They catalyze their own excision from mRNA, tRNA and rRNA precursors in a wide range of organisms. The core secondary structure consists of 9 paired regions (P1-P9). These fold to essentially two domains, the P4-P6 domain (formed from the stacking of P5, P4, P6 and P6a helices) and the P3-P9 domain (formed from the P8, P3, P7 and P9 helices). Group I catalytic introns often have long ORFs inserted in loop regions." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00028]	2928168	SOFA	SOFA	sequence	4	SO	primary_transcript	group_I_intron
SO:0000833	SO:0000835	SOFA	"A region of a transcript." [SO:ke]	SO:0000587	"Group I catalytic introns are large self-splicing ribozymes. They catalyze their own excision from mRNA, tRNA and rRNA precursors in a wide range of organisms. The core secondary structure consists of 9 paired regions (P1-P9). These fold to essentially two domains, the P4-P6 domain (formed from the stacking of P5, P4, P6 and P6a helices) and the P3-P9 domain (formed from the P8, P3, P7 and P9 helices). Group I catalytic introns often have long ORFs inserted in loop regions." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00028]	2928169	SOFA	SOFA	sequence	4	SO	transcript_region	group_I_intron
SO:0000673	SO:0000185	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000587	"Group I catalytic introns are large self-splicing ribozymes. They catalyze their own excision from mRNA, tRNA and rRNA precursors in a wide range of organisms. The core secondary structure consists of 9 paired regions (P1-P9). These fold to essentially two domains, the P4-P6 domain (formed from the stacking of P5, P4, P6 and P6a helices) and the P3-P9 domain (formed from the P8, P3, P7 and P9 helices). Group I catalytic introns often have long ORFs inserted in loop regions." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00028]	4001521	SOFA	SOFA	sequence	5	SO	transcript	group_I_intron
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000587	"Group I catalytic introns are large self-splicing ribozymes. They catalyze their own excision from mRNA, tRNA and rRNA precursors in a wide range of organisms. The core secondary structure consists of 9 paired regions (P1-P9). These fold to essentially two domains, the P4-P6 domain (formed from the stacking of P5, P4, P6 and P6a helices) and the P3-P9 domain (formed from the P8, P3, P7 and P9 helices). Group I catalytic introns often have long ORFs inserted in loop regions." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00028]	4001522	SOFA	SOFA	sequence	5	SO	transcript	group_I_intron
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000587	"Group I catalytic introns are large self-splicing ribozymes. They catalyze their own excision from mRNA, tRNA and rRNA precursors in a wide range of organisms. The core secondary structure consists of 9 paired regions (P1-P9). These fold to essentially two domains, the P4-P6 domain (formed from the stacking of P5, P4, P6 and P6a helices) and the P3-P9 domain (formed from the P8, P3, P7 and P9 helices). Group I catalytic introns often have long ORFs inserted in loop regions." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00028]	4001523	SOFA	SOFA	sequence	5	SO	biological_region	group_I_intron
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000587	"Group I catalytic introns are large self-splicing ribozymes. They catalyze their own excision from mRNA, tRNA and rRNA precursors in a wide range of organisms. The core secondary structure consists of 9 paired regions (P1-P9). These fold to essentially two domains, the P4-P6 domain (formed from the stacking of P5, P4, P6 and P6a helices) and the P3-P9 domain (formed from the P8, P3, P7 and P9 helices). Group I catalytic introns often have long ORFs inserted in loop regions." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00028]	4966062	SOFA	SOFA	sequence	6	SO	gene_member_region	group_I_intron
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000587	"Group I catalytic introns are large self-splicing ribozymes. They catalyze their own excision from mRNA, tRNA and rRNA precursors in a wide range of organisms. The core secondary structure consists of 9 paired regions (P1-P9). These fold to essentially two domains, the P4-P6 domain (formed from the stacking of P5, P4, P6 and P6a helices) and the P3-P9 domain (formed from the P8, P3, P7 and P9 helices). Group I catalytic introns often have long ORFs inserted in loop regions." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00028]	6310934	SOFA	SOFA	sequence	8	SO	region	group_I_intron
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000587	"Group I catalytic introns are large self-splicing ribozymes. They catalyze their own excision from mRNA, tRNA and rRNA precursors in a wide range of organisms. The core secondary structure consists of 9 paired regions (P1-P9). These fold to essentially two domains, the P4-P6 domain (formed from the stacking of P5, P4, P6 and P6a helices) and the P3-P9 domain (formed from the P8, P3, P7 and P9 helices). Group I catalytic introns often have long ORFs inserted in loop regions." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00028]	5740991	SOFA	SOFA	sequence	7	SO	biological_region	group_I_intron
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000587	"Group I catalytic introns are large self-splicing ribozymes. They catalyze their own excision from mRNA, tRNA and rRNA precursors in a wide range of organisms. The core secondary structure consists of 9 paired regions (P1-P9). These fold to essentially two domains, the P4-P6 domain (formed from the stacking of P5, P4, P6 and P6a helices) and the P3-P9 domain (formed from the P8, P3, P7 and P9 helices). Group I catalytic introns often have long ORFs inserted in loop regions." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00028]	6550256	SOFA	SOFA	sequence	9	SO	sequence_feature	group_I_intron
SO:0000588	\N	SOFA	"A self spliced intron." [SO:ke]	SO:0000588	"A self spliced intron." [SO:ke]	45533	\N	SOFA	sequence	0	SO	autocatalytically_spliced_intron	autocatalytically_spliced_intron
SO:0000188	SO:0000588	SOFA	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000588	"A self spliced intron." [SO:ke]	490182	SOFA	SOFA	sequence	1	SO	intron	autocatalytically_spliced_intron
SO:0000835	SO:0000188	SOFA	"A part of a primary transcript." [SO:ke]	SO:0000588	"A self spliced intron." [SO:ke]	1072656	SOFA	SOFA	sequence	2	SO	primary_transcript_region	autocatalytically_spliced_intron
SO:0000185	SO:0000835	SOFA	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000588	"A self spliced intron." [SO:ke]	1903699	SOFA	SOFA	sequence	3	SO	primary_transcript	autocatalytically_spliced_intron
SO:0000833	SO:0000835	SOFA	"A region of a transcript." [SO:ke]	SO:0000588	"A self spliced intron." [SO:ke]	1903700	SOFA	SOFA	sequence	3	SO	transcript_region	autocatalytically_spliced_intron
SO:0000673	SO:0000185	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000588	"A self spliced intron." [SO:ke]	2928170	SOFA	SOFA	sequence	4	SO	transcript	autocatalytically_spliced_intron
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000588	"A self spliced intron." [SO:ke]	2928171	SOFA	SOFA	sequence	4	SO	transcript	autocatalytically_spliced_intron
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000588	"A self spliced intron." [SO:ke]	2928172	SOFA	SOFA	sequence	4	SO	biological_region	autocatalytically_spliced_intron
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000588	"A self spliced intron." [SO:ke]	4001524	SOFA	SOFA	sequence	5	SO	gene_member_region	autocatalytically_spliced_intron
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000588	"A self spliced intron." [SO:ke]	5740993	SOFA	SOFA	sequence	7	SO	region	autocatalytically_spliced_intron
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000588	"A self spliced intron." [SO:ke]	4966064	SOFA	SOFA	sequence	6	SO	biological_region	autocatalytically_spliced_intron
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000588	"A self spliced intron." [SO:ke]	5996391	SOFA	SOFA	sequence	8	SO	sequence_feature	autocatalytically_spliced_intron
SO:0000589	\N	\N	"A primary transcript encoding a signal recognition particle RNA." [SO:ke]	SO:0000589	"A primary transcript encoding a signal recognition particle RNA." [SO:ke]	45534	\N	\N	sequence	0	SO	SRP_RNA_primary_transcript	SRP_RNA_primary_transcript
SO:0000483	SO:0000589	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000589	"A primary transcript encoding a signal recognition particle RNA." [SO:ke]	490183	\N	SOFA	sequence	1	SO	nc_primary_transcript	SRP_RNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000589	"A primary transcript encoding a signal recognition particle RNA." [SO:ke]	1072657	SOFA	SOFA	sequence	2	SO	primary_transcript	SRP_RNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000589	"A primary transcript encoding a signal recognition particle RNA." [SO:ke]	1903701	SOFA	SOFA	sequence	3	SO	transcript	SRP_RNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000589	"A primary transcript encoding a signal recognition particle RNA." [SO:ke]	2928173	SOFA	SOFA	sequence	4	SO	gene_member_region	SRP_RNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000589	"A primary transcript encoding a signal recognition particle RNA." [SO:ke]	4001526	SOFA	SOFA	sequence	5	SO	biological_region	SRP_RNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000589	"A primary transcript encoding a signal recognition particle RNA." [SO:ke]	4966066	SOFA	SOFA	sequence	6	SO	region	SRP_RNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000589	"A primary transcript encoding a signal recognition particle RNA." [SO:ke]	5740994	SOFA	SOFA	sequence	7	SO	sequence_feature	SRP_RNA_primary_transcript
SO:0000590	\N	SOFA	"The signal recognition particle (SRP) is a universally conserved ribonucleoprotein. It is involved in the co-translational targeting of proteins to membranes. The eukaryotic SRP consists of a 300-nucleotide 7S RNA and six proteins: SRPs 72, 68, 54, 19, 14, and 9. Archaeal SRP consists of a 7S RNA and homologues of the eukaryotic SRP19 and SRP54 proteins. In most eubacteria, the SRP consists of a 4.5S RNA and the Ffh protein (a homologue of the eukaryotic SRP54 protein). Eukaryotic and archaeal 7S RNAs have very similar secondary structures, with eight helical elements. These fold into the Alu and S domains, separated by a long linker region. Eubacterial SRP is generally a simpler structure, with the M domain of Ffh bound to a region of the 4.5S RNA that corresponds to helix 8 of the eukaryotic and archaeal SRP S domain. Some Gram-positive bacteria (e.g. Bacillus subtilis), however, have a larger SRP RNA that also has an Alu domain. The Alu domain is thought to mediate the peptide chain elongation retardation function of the SRP. The universally conserved helix which interacts with the SRP54/Ffh M domain mediates signal sequence recognition. In eukaryotes and archaea, the SRP19-helix 6 complex is thought to be involved in SRP assembly and stabilizes helix 8 for SRP54 binding." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00017]	SO:0000590	"The signal recognition particle (SRP) is a universally conserved ribonucleoprotein. It is involved in the co-translational targeting of proteins to membranes. The eukaryotic SRP consists of a 300-nucleotide 7S RNA and six proteins: SRPs 72, 68, 54, 19, 14, and 9. Archaeal SRP consists of a 7S RNA and homologues of the eukaryotic SRP19 and SRP54 proteins. In most eubacteria, the SRP consists of a 4.5S RNA and the Ffh protein (a homologue of the eukaryotic SRP54 protein). Eukaryotic and archaeal 7S RNAs have very similar secondary structures, with eight helical elements. These fold into the Alu and S domains, separated by a long linker region. Eubacterial SRP is generally a simpler structure, with the M domain of Ffh bound to a region of the 4.5S RNA that corresponds to helix 8 of the eukaryotic and archaeal SRP S domain. Some Gram-positive bacteria (e.g. Bacillus subtilis), however, have a larger SRP RNA that also has an Alu domain. The Alu domain is thought to mediate the peptide chain elongation retardation function of the SRP. The universally conserved helix which interacts with the SRP54/Ffh M domain mediates signal sequence recognition. In eukaryotes and archaea, the SRP19-helix 6 complex is thought to be involved in SRP assembly and stabilizes helix 8 for SRP54 binding." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00017]	45535	\N	SOFA	sequence	0	SO	SRP_RNA	SRP_RNA
SO:0000655	SO:0000590	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000590	"The signal recognition particle (SRP) is a universally conserved ribonucleoprotein. It is involved in the co-translational targeting of proteins to membranes. The eukaryotic SRP consists of a 300-nucleotide 7S RNA and six proteins: SRPs 72, 68, 54, 19, 14, and 9. Archaeal SRP consists of a 7S RNA and homologues of the eukaryotic SRP19 and SRP54 proteins. In most eubacteria, the SRP consists of a 4.5S RNA and the Ffh protein (a homologue of the eukaryotic SRP54 protein). Eukaryotic and archaeal 7S RNAs have very similar secondary structures, with eight helical elements. These fold into the Alu and S domains, separated by a long linker region. Eubacterial SRP is generally a simpler structure, with the M domain of Ffh bound to a region of the 4.5S RNA that corresponds to helix 8 of the eukaryotic and archaeal SRP S domain. Some Gram-positive bacteria (e.g. Bacillus subtilis), however, have a larger SRP RNA that also has an Alu domain. The Alu domain is thought to mediate the peptide chain elongation retardation function of the SRP. The universally conserved helix which interacts with the SRP54/Ffh M domain mediates signal sequence recognition. In eukaryotes and archaea, the SRP19-helix 6 complex is thought to be involved in SRP assembly and stabilizes helix 8 for SRP54 binding." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00017]	490184	SOFA	SOFA	sequence	1	SO	ncRNA	SRP_RNA
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000590	"The signal recognition particle (SRP) is a universally conserved ribonucleoprotein. It is involved in the co-translational targeting of proteins to membranes. The eukaryotic SRP consists of a 300-nucleotide 7S RNA and six proteins: SRPs 72, 68, 54, 19, 14, and 9. Archaeal SRP consists of a 7S RNA and homologues of the eukaryotic SRP19 and SRP54 proteins. In most eubacteria, the SRP consists of a 4.5S RNA and the Ffh protein (a homologue of the eukaryotic SRP54 protein). Eukaryotic and archaeal 7S RNAs have very similar secondary structures, with eight helical elements. These fold into the Alu and S domains, separated by a long linker region. Eubacterial SRP is generally a simpler structure, with the M domain of Ffh bound to a region of the 4.5S RNA that corresponds to helix 8 of the eukaryotic and archaeal SRP S domain. Some Gram-positive bacteria (e.g. Bacillus subtilis), however, have a larger SRP RNA that also has an Alu domain. The Alu domain is thought to mediate the peptide chain elongation retardation function of the SRP. The universally conserved helix which interacts with the SRP54/Ffh M domain mediates signal sequence recognition. In eukaryotes and archaea, the SRP19-helix 6 complex is thought to be involved in SRP assembly and stabilizes helix 8 for SRP54 binding." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00017]	1072658	SOFA	SOFA	sequence	2	SO	mature_transcript	SRP_RNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000590	"The signal recognition particle (SRP) is a universally conserved ribonucleoprotein. It is involved in the co-translational targeting of proteins to membranes. The eukaryotic SRP consists of a 300-nucleotide 7S RNA and six proteins: SRPs 72, 68, 54, 19, 14, and 9. Archaeal SRP consists of a 7S RNA and homologues of the eukaryotic SRP19 and SRP54 proteins. In most eubacteria, the SRP consists of a 4.5S RNA and the Ffh protein (a homologue of the eukaryotic SRP54 protein). Eukaryotic and archaeal 7S RNAs have very similar secondary structures, with eight helical elements. These fold into the Alu and S domains, separated by a long linker region. Eubacterial SRP is generally a simpler structure, with the M domain of Ffh bound to a region of the 4.5S RNA that corresponds to helix 8 of the eukaryotic and archaeal SRP S domain. Some Gram-positive bacteria (e.g. Bacillus subtilis), however, have a larger SRP RNA that also has an Alu domain. The Alu domain is thought to mediate the peptide chain elongation retardation function of the SRP. The universally conserved helix which interacts with the SRP54/Ffh M domain mediates signal sequence recognition. In eukaryotes and archaea, the SRP19-helix 6 complex is thought to be involved in SRP assembly and stabilizes helix 8 for SRP54 binding." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00017]	1903702	SOFA	SOFA	sequence	3	SO	transcript	SRP_RNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000590	"The signal recognition particle (SRP) is a universally conserved ribonucleoprotein. It is involved in the co-translational targeting of proteins to membranes. The eukaryotic SRP consists of a 300-nucleotide 7S RNA and six proteins: SRPs 72, 68, 54, 19, 14, and 9. Archaeal SRP consists of a 7S RNA and homologues of the eukaryotic SRP19 and SRP54 proteins. In most eubacteria, the SRP consists of a 4.5S RNA and the Ffh protein (a homologue of the eukaryotic SRP54 protein). Eukaryotic and archaeal 7S RNAs have very similar secondary structures, with eight helical elements. These fold into the Alu and S domains, separated by a long linker region. Eubacterial SRP is generally a simpler structure, with the M domain of Ffh bound to a region of the 4.5S RNA that corresponds to helix 8 of the eukaryotic and archaeal SRP S domain. Some Gram-positive bacteria (e.g. Bacillus subtilis), however, have a larger SRP RNA that also has an Alu domain. The Alu domain is thought to mediate the peptide chain elongation retardation function of the SRP. The universally conserved helix which interacts with the SRP54/Ffh M domain mediates signal sequence recognition. In eukaryotes and archaea, the SRP19-helix 6 complex is thought to be involved in SRP assembly and stabilizes helix 8 for SRP54 binding." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00017]	2928174	SOFA	SOFA	sequence	4	SO	gene_member_region	SRP_RNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000590	"The signal recognition particle (SRP) is a universally conserved ribonucleoprotein. It is involved in the co-translational targeting of proteins to membranes. The eukaryotic SRP consists of a 300-nucleotide 7S RNA and six proteins: SRPs 72, 68, 54, 19, 14, and 9. Archaeal SRP consists of a 7S RNA and homologues of the eukaryotic SRP19 and SRP54 proteins. In most eubacteria, the SRP consists of a 4.5S RNA and the Ffh protein (a homologue of the eukaryotic SRP54 protein). Eukaryotic and archaeal 7S RNAs have very similar secondary structures, with eight helical elements. These fold into the Alu and S domains, separated by a long linker region. Eubacterial SRP is generally a simpler structure, with the M domain of Ffh bound to a region of the 4.5S RNA that corresponds to helix 8 of the eukaryotic and archaeal SRP S domain. Some Gram-positive bacteria (e.g. Bacillus subtilis), however, have a larger SRP RNA that also has an Alu domain. The Alu domain is thought to mediate the peptide chain elongation retardation function of the SRP. The universally conserved helix which interacts with the SRP54/Ffh M domain mediates signal sequence recognition. In eukaryotes and archaea, the SRP19-helix 6 complex is thought to be involved in SRP assembly and stabilizes helix 8 for SRP54 binding." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00017]	4001527	SOFA	SOFA	sequence	5	SO	biological_region	SRP_RNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000590	"The signal recognition particle (SRP) is a universally conserved ribonucleoprotein. It is involved in the co-translational targeting of proteins to membranes. The eukaryotic SRP consists of a 300-nucleotide 7S RNA and six proteins: SRPs 72, 68, 54, 19, 14, and 9. Archaeal SRP consists of a 7S RNA and homologues of the eukaryotic SRP19 and SRP54 proteins. In most eubacteria, the SRP consists of a 4.5S RNA and the Ffh protein (a homologue of the eukaryotic SRP54 protein). Eukaryotic and archaeal 7S RNAs have very similar secondary structures, with eight helical elements. These fold into the Alu and S domains, separated by a long linker region. Eubacterial SRP is generally a simpler structure, with the M domain of Ffh bound to a region of the 4.5S RNA that corresponds to helix 8 of the eukaryotic and archaeal SRP S domain. Some Gram-positive bacteria (e.g. Bacillus subtilis), however, have a larger SRP RNA that also has an Alu domain. The Alu domain is thought to mediate the peptide chain elongation retardation function of the SRP. The universally conserved helix which interacts with the SRP54/Ffh M domain mediates signal sequence recognition. In eukaryotes and archaea, the SRP19-helix 6 complex is thought to be involved in SRP assembly and stabilizes helix 8 for SRP54 binding." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00017]	4966067	SOFA	SOFA	sequence	6	SO	region	SRP_RNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000590	"The signal recognition particle (SRP) is a universally conserved ribonucleoprotein. It is involved in the co-translational targeting of proteins to membranes. The eukaryotic SRP consists of a 300-nucleotide 7S RNA and six proteins: SRPs 72, 68, 54, 19, 14, and 9. Archaeal SRP consists of a 7S RNA and homologues of the eukaryotic SRP19 and SRP54 proteins. In most eubacteria, the SRP consists of a 4.5S RNA and the Ffh protein (a homologue of the eukaryotic SRP54 protein). Eukaryotic and archaeal 7S RNAs have very similar secondary structures, with eight helical elements. These fold into the Alu and S domains, separated by a long linker region. Eubacterial SRP is generally a simpler structure, with the M domain of Ffh bound to a region of the 4.5S RNA that corresponds to helix 8 of the eukaryotic and archaeal SRP S domain. Some Gram-positive bacteria (e.g. Bacillus subtilis), however, have a larger SRP RNA that also has an Alu domain. The Alu domain is thought to mediate the peptide chain elongation retardation function of the SRP. The universally conserved helix which interacts with the SRP54/Ffh M domain mediates signal sequence recognition. In eukaryotes and archaea, the SRP19-helix 6 complex is thought to be involved in SRP assembly and stabilizes helix 8 for SRP54 binding." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00017]	5740995	SOFA	SOFA	sequence	7	SO	sequence_feature	SRP_RNA
SO:0000591	\N	\N	"A tertiary structure in RNA where nucleotides in a loop form base pairs with a region of RNA downstream of the loop." [RSC:cb]	SO:0000591	"A tertiary structure in RNA where nucleotides in a loop form base pairs with a region of RNA downstream of the loop." [RSC:cb]	45536	\N	\N	sequence	0	SO	pseudoknot	pseudoknot
SO:0000002	SO:0000591	\N	"A folded sequence." [SO:ke]	SO:0000591	"A tertiary structure in RNA where nucleotides in a loop form base pairs with a region of RNA downstream of the loop." [RSC:cb]	490185	\N	\N	sequence	1	SO	sequence_secondary_structure	pseudoknot
SO:0001411	SO:0000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000591	"A tertiary structure in RNA where nucleotides in a loop form base pairs with a region of RNA downstream of the loop." [RSC:cb]	1072659	\N	SOFA	sequence	2	SO	biological_region	pseudoknot
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000591	"A tertiary structure in RNA where nucleotides in a loop form base pairs with a region of RNA downstream of the loop." [RSC:cb]	1903703	SOFA	SOFA	sequence	3	SO	region	pseudoknot
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000591	"A tertiary structure in RNA where nucleotides in a loop form base pairs with a region of RNA downstream of the loop." [RSC:cb]	2928175	SOFA	SOFA	sequence	4	SO	sequence_feature	pseudoknot
SO:0000592	\N	\N	"A pseudoknot which contains two stems and at least two loops." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=10334330&dopt=Abstract]	SO:0000592	"A pseudoknot which contains two stems and at least two loops." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=10334330&dopt=Abstract]	45537	\N	\N	sequence	0	SO	H_pseudoknot	H_pseudoknot
SO:0000591	SO:0000592	\N	"A tertiary structure in RNA where nucleotides in a loop form base pairs with a region of RNA downstream of the loop." [RSC:cb]	SO:0000592	"A pseudoknot which contains two stems and at least two loops." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=10334330&dopt=Abstract]	490186	\N	\N	sequence	1	SO	pseudoknot	H_pseudoknot
SO:0000002	SO:0000591	\N	"A folded sequence." [SO:ke]	SO:0000592	"A pseudoknot which contains two stems and at least two loops." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=10334330&dopt=Abstract]	1072660	\N	\N	sequence	2	SO	sequence_secondary_structure	H_pseudoknot
SO:0001411	SO:0000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000592	"A pseudoknot which contains two stems and at least two loops." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=10334330&dopt=Abstract]	1903704	\N	SOFA	sequence	3	SO	biological_region	H_pseudoknot
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000592	"A pseudoknot which contains two stems and at least two loops." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=10334330&dopt=Abstract]	2928176	SOFA	SOFA	sequence	4	SO	region	H_pseudoknot
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000592	"A pseudoknot which contains two stems and at least two loops." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=10334330&dopt=Abstract]	4001528	SOFA	SOFA	sequence	5	SO	sequence_feature	H_pseudoknot
SO:0000593	\N	SOFA	"Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'." [http://www.bio.umass.edu/biochem/rna-sequence/Yeast_snoRNA_Database/snoRNA_DataBase.html]	SO:0000593	"Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'." [http://www.bio.umass.edu/biochem/rna-sequence/Yeast_snoRNA_Database/snoRNA_DataBase.html]	45538	\N	SOFA	sequence	0	SO	C_D_box_snoRNA	C_D_box_snoRNA
SO:0000275	SO:0000593	SOFA	"A snoRNA (small nucleolar RNA) is any one of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA." [GOC:kgc]	SO:0000593	"Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'." [http://www.bio.umass.edu/biochem/rna-sequence/Yeast_snoRNA_Database/snoRNA_DataBase.html]	490187	SOFA	SOFA	sequence	1	SO	snoRNA	C_D_box_snoRNA
SO:0000655	SO:0000275	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000593	"Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'." [http://www.bio.umass.edu/biochem/rna-sequence/Yeast_snoRNA_Database/snoRNA_DataBase.html]	1072661	SOFA	SOFA	sequence	2	SO	ncRNA	C_D_box_snoRNA
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000593	"Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'." [http://www.bio.umass.edu/biochem/rna-sequence/Yeast_snoRNA_Database/snoRNA_DataBase.html]	1903705	SOFA	SOFA	sequence	3	SO	mature_transcript	C_D_box_snoRNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000593	"Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'." [http://www.bio.umass.edu/biochem/rna-sequence/Yeast_snoRNA_Database/snoRNA_DataBase.html]	2928177	SOFA	SOFA	sequence	4	SO	transcript	C_D_box_snoRNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000593	"Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'." [http://www.bio.umass.edu/biochem/rna-sequence/Yeast_snoRNA_Database/snoRNA_DataBase.html]	4001529	SOFA	SOFA	sequence	5	SO	gene_member_region	C_D_box_snoRNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000593	"Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'." [http://www.bio.umass.edu/biochem/rna-sequence/Yeast_snoRNA_Database/snoRNA_DataBase.html]	4966068	SOFA	SOFA	sequence	6	SO	biological_region	C_D_box_snoRNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000593	"Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'." [http://www.bio.umass.edu/biochem/rna-sequence/Yeast_snoRNA_Database/snoRNA_DataBase.html]	5740996	SOFA	SOFA	sequence	7	SO	region	C_D_box_snoRNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000593	"Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'." [http://www.bio.umass.edu/biochem/rna-sequence/Yeast_snoRNA_Database/snoRNA_DataBase.html]	6310935	SOFA	SOFA	sequence	8	SO	sequence_feature	C_D_box_snoRNA
SO:0000594	\N	\N	"Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains." [http://www.bio.umass.edu/biochem/rna-sequence/Yeast_snoRNA_Database/snoRNA_DataBase.html]	SO:0000594	"Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains." [http://www.bio.umass.edu/biochem/rna-sequence/Yeast_snoRNA_Database/snoRNA_DataBase.html]	45539	\N	\N	sequence	0	SO	H_ACA_box_snoRNA	H_ACA_box_snoRNA
SO:0000275	SO:0000594	\N	"A snoRNA (small nucleolar RNA) is any one of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA." [GOC:kgc]	SO:0000594	"Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains." [http://www.bio.umass.edu/biochem/rna-sequence/Yeast_snoRNA_Database/snoRNA_DataBase.html]	490188	\N	SOFA	sequence	1	SO	snoRNA	H_ACA_box_snoRNA
SO:0000655	SO:0000275	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000594	"Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains." [http://www.bio.umass.edu/biochem/rna-sequence/Yeast_snoRNA_Database/snoRNA_DataBase.html]	1072662	SOFA	SOFA	sequence	2	SO	ncRNA	H_ACA_box_snoRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000594	"Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains." [http://www.bio.umass.edu/biochem/rna-sequence/Yeast_snoRNA_Database/snoRNA_DataBase.html]	1903706	SOFA	SOFA	sequence	3	SO	mature_transcript	H_ACA_box_snoRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000594	"Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains." [http://www.bio.umass.edu/biochem/rna-sequence/Yeast_snoRNA_Database/snoRNA_DataBase.html]	2928178	SOFA	SOFA	sequence	4	SO	transcript	H_ACA_box_snoRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000594	"Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains." [http://www.bio.umass.edu/biochem/rna-sequence/Yeast_snoRNA_Database/snoRNA_DataBase.html]	4001530	SOFA	SOFA	sequence	5	SO	gene_member_region	H_ACA_box_snoRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000594	"Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains." [http://www.bio.umass.edu/biochem/rna-sequence/Yeast_snoRNA_Database/snoRNA_DataBase.html]	4966069	SOFA	SOFA	sequence	6	SO	biological_region	H_ACA_box_snoRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000594	"Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains." [http://www.bio.umass.edu/biochem/rna-sequence/Yeast_snoRNA_Database/snoRNA_DataBase.html]	5740997	SOFA	SOFA	sequence	7	SO	region	H_ACA_box_snoRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000594	"Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains." [http://www.bio.umass.edu/biochem/rna-sequence/Yeast_snoRNA_Database/snoRNA_DataBase.html]	6310936	SOFA	SOFA	sequence	8	SO	sequence_feature	H_ACA_box_snoRNA
SO:0000595	\N	\N	"A primary transcript encoding a small nucleolar RNA of the box C/D family." [SO:ke]	SO:0000595	"A primary transcript encoding a small nucleolar RNA of the box C/D family." [SO:ke]	45540	\N	\N	sequence	0	SO	C_D_box_snoRNA_primary_transcript	C_D_box_snoRNA_primary_transcript
SO:0000232	SO:0000595	\N	"A primary transcript encoding a small nucleolar mRNA (SO:0000275)." [SO:ke]	SO:0000595	"A primary transcript encoding a small nucleolar RNA of the box C/D family." [SO:ke]	490189	\N	\N	sequence	1	SO	snoRNA_primary_transcript	C_D_box_snoRNA_primary_transcript
SO:0000483	SO:0000232	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000595	"A primary transcript encoding a small nucleolar RNA of the box C/D family." [SO:ke]	1072663	\N	SOFA	sequence	2	SO	nc_primary_transcript	C_D_box_snoRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000595	"A primary transcript encoding a small nucleolar RNA of the box C/D family." [SO:ke]	1903707	SOFA	SOFA	sequence	3	SO	primary_transcript	C_D_box_snoRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000595	"A primary transcript encoding a small nucleolar RNA of the box C/D family." [SO:ke]	2928179	SOFA	SOFA	sequence	4	SO	transcript	C_D_box_snoRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000595	"A primary transcript encoding a small nucleolar RNA of the box C/D family." [SO:ke]	4001531	SOFA	SOFA	sequence	5	SO	gene_member_region	C_D_box_snoRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000595	"A primary transcript encoding a small nucleolar RNA of the box C/D family." [SO:ke]	4966070	SOFA	SOFA	sequence	6	SO	biological_region	C_D_box_snoRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000595	"A primary transcript encoding a small nucleolar RNA of the box C/D family." [SO:ke]	5740998	SOFA	SOFA	sequence	7	SO	region	C_D_box_snoRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000595	"A primary transcript encoding a small nucleolar RNA of the box C/D family." [SO:ke]	6310937	SOFA	SOFA	sequence	8	SO	sequence_feature	C_D_box_snoRNA_primary_transcript
SO:0000596	\N	\N	"A primary transcript encoding a small nucleolar RNA of the box H/ACA family." [SO:ke]	SO:0000596	"A primary transcript encoding a small nucleolar RNA of the box H/ACA family." [SO:ke]	45541	\N	\N	sequence	0	SO	H_ACA_box_snoRNA_primary_transcript	H_ACA_box_snoRNA_primary_transcript
SO:0000232	SO:0000596	\N	"A primary transcript encoding a small nucleolar mRNA (SO:0000275)." [SO:ke]	SO:0000596	"A primary transcript encoding a small nucleolar RNA of the box H/ACA family." [SO:ke]	490190	\N	\N	sequence	1	SO	snoRNA_primary_transcript	H_ACA_box_snoRNA_primary_transcript
SO:0000483	SO:0000232	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000596	"A primary transcript encoding a small nucleolar RNA of the box H/ACA family." [SO:ke]	1072664	\N	SOFA	sequence	2	SO	nc_primary_transcript	H_ACA_box_snoRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000596	"A primary transcript encoding a small nucleolar RNA of the box H/ACA family." [SO:ke]	1903708	SOFA	SOFA	sequence	3	SO	primary_transcript	H_ACA_box_snoRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000596	"A primary transcript encoding a small nucleolar RNA of the box H/ACA family." [SO:ke]	2928180	SOFA	SOFA	sequence	4	SO	transcript	H_ACA_box_snoRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000596	"A primary transcript encoding a small nucleolar RNA of the box H/ACA family." [SO:ke]	4001532	SOFA	SOFA	sequence	5	SO	gene_member_region	H_ACA_box_snoRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000596	"A primary transcript encoding a small nucleolar RNA of the box H/ACA family." [SO:ke]	4966071	SOFA	SOFA	sequence	6	SO	biological_region	H_ACA_box_snoRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000596	"A primary transcript encoding a small nucleolar RNA of the box H/ACA family." [SO:ke]	5740999	SOFA	SOFA	sequence	7	SO	region	H_ACA_box_snoRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000596	"A primary transcript encoding a small nucleolar RNA of the box H/ACA family." [SO:ke]	6310938	SOFA	SOFA	sequence	8	SO	sequence_feature	H_ACA_box_snoRNA_primary_transcript
SO:0000602	\N	SOFA	"A short 3'-uridylated RNA that can form a duplex (except for its post-transcriptionally added oligo_U tail (SO:0000609)) with a stretch of mature edited mRNA." [http://www.rna.ucla.edu/index.html]	SO:0000602	"A short 3'-uridylated RNA that can form a duplex (except for its post-transcriptionally added oligo_U tail (SO:0000609)) with a stretch of mature edited mRNA." [http://www.rna.ucla.edu/index.html]	45542	\N	SOFA	sequence	0	SO	guide_RNA	guide_RNA
SO:0000655	SO:0000602	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000602	"A short 3'-uridylated RNA that can form a duplex (except for its post-transcriptionally added oligo_U tail (SO:0000609)) with a stretch of mature edited mRNA." [http://www.rna.ucla.edu/index.html]	490191	SOFA	SOFA	sequence	1	SO	ncRNA	guide_RNA
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000602	"A short 3'-uridylated RNA that can form a duplex (except for its post-transcriptionally added oligo_U tail (SO:0000609)) with a stretch of mature edited mRNA." [http://www.rna.ucla.edu/index.html]	1072665	SOFA	SOFA	sequence	2	SO	mature_transcript	guide_RNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000602	"A short 3'-uridylated RNA that can form a duplex (except for its post-transcriptionally added oligo_U tail (SO:0000609)) with a stretch of mature edited mRNA." [http://www.rna.ucla.edu/index.html]	1903709	SOFA	SOFA	sequence	3	SO	transcript	guide_RNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000602	"A short 3'-uridylated RNA that can form a duplex (except for its post-transcriptionally added oligo_U tail (SO:0000609)) with a stretch of mature edited mRNA." [http://www.rna.ucla.edu/index.html]	2928181	SOFA	SOFA	sequence	4	SO	gene_member_region	guide_RNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000602	"A short 3'-uridylated RNA that can form a duplex (except for its post-transcriptionally added oligo_U tail (SO:0000609)) with a stretch of mature edited mRNA." [http://www.rna.ucla.edu/index.html]	4001533	SOFA	SOFA	sequence	5	SO	biological_region	guide_RNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000602	"A short 3'-uridylated RNA that can form a duplex (except for its post-transcriptionally added oligo_U tail (SO:0000609)) with a stretch of mature edited mRNA." [http://www.rna.ucla.edu/index.html]	4966072	SOFA	SOFA	sequence	6	SO	region	guide_RNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000602	"A short 3'-uridylated RNA that can form a duplex (except for its post-transcriptionally added oligo_U tail (SO:0000609)) with a stretch of mature edited mRNA." [http://www.rna.ucla.edu/index.html]	5741000	SOFA	SOFA	sequence	7	SO	sequence_feature	guide_RNA
SO:0000603	\N	SOFA	"Group II introns are found in rRNA, tRNA and mRNA of organelles in fungi, plants and protists, and also in mRNA in bacteria. They are large self-splicing ribozymes and have 6 structural domains (usually designated dI to dVI). A subset of group II introns also encode essential splicing proteins in intronic ORFs. The length of these introns can therefore be up to 3kb. Splicing occurs in almost identical fashion to nuclear pre-mRNA splicing with two transesterification steps. The 2' hydroxyl of a bulged adenosine in domain VI attacks the 5' splice site, followed by nucleophilic attack on the 3' splice site by the 3' OH of the upstream exon. Protein machinery is required for splicing in vivo, and long range intron to intron and intron-exon interactions are important for splice site positioning. Group II introns are further sub-classified into groups IIA and IIB which differ in splice site consensus, distance of bulged A from 3' splice site, some tertiary interactions, and intronic ORF phylogeny." [http://www.sanger.ac.uk/Software/Rfam/browse/index.shtml]	SO:0000603	"Group II introns are found in rRNA, tRNA and mRNA of organelles in fungi, plants and protists, and also in mRNA in bacteria. They are large self-splicing ribozymes and have 6 structural domains (usually designated dI to dVI). A subset of group II introns also encode essential splicing proteins in intronic ORFs. The length of these introns can therefore be up to 3kb. Splicing occurs in almost identical fashion to nuclear pre-mRNA splicing with two transesterification steps. The 2' hydroxyl of a bulged adenosine in domain VI attacks the 5' splice site, followed by nucleophilic attack on the 3' splice site by the 3' OH of the upstream exon. Protein machinery is required for splicing in vivo, and long range intron to intron and intron-exon interactions are important for splice site positioning. Group II introns are further sub-classified into groups IIA and IIB which differ in splice site consensus, distance of bulged A from 3' splice site, some tertiary interactions, and intronic ORF phylogeny." [http://www.sanger.ac.uk/Software/Rfam/browse/index.shtml]	45543	\N	SOFA	sequence	0	SO	group_II_intron	group_II_intron
SO:0000588	SO:0000603	SOFA	"A self spliced intron." [SO:ke]	SO:0000603	"Group II introns are found in rRNA, tRNA and mRNA of organelles in fungi, plants and protists, and also in mRNA in bacteria. They are large self-splicing ribozymes and have 6 structural domains (usually designated dI to dVI). A subset of group II introns also encode essential splicing proteins in intronic ORFs. The length of these introns can therefore be up to 3kb. Splicing occurs in almost identical fashion to nuclear pre-mRNA splicing with two transesterification steps. The 2' hydroxyl of a bulged adenosine in domain VI attacks the 5' splice site, followed by nucleophilic attack on the 3' splice site by the 3' OH of the upstream exon. Protein machinery is required for splicing in vivo, and long range intron to intron and intron-exon interactions are important for splice site positioning. Group II introns are further sub-classified into groups IIA and IIB which differ in splice site consensus, distance of bulged A from 3' splice site, some tertiary interactions, and intronic ORF phylogeny." [http://www.sanger.ac.uk/Software/Rfam/browse/index.shtml]	490192	SOFA	SOFA	sequence	1	SO	autocatalytically_spliced_intron	group_II_intron
SO:0000188	SO:0000588	SOFA	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000603	"Group II introns are found in rRNA, tRNA and mRNA of organelles in fungi, plants and protists, and also in mRNA in bacteria. They are large self-splicing ribozymes and have 6 structural domains (usually designated dI to dVI). A subset of group II introns also encode essential splicing proteins in intronic ORFs. The length of these introns can therefore be up to 3kb. Splicing occurs in almost identical fashion to nuclear pre-mRNA splicing with two transesterification steps. The 2' hydroxyl of a bulged adenosine in domain VI attacks the 5' splice site, followed by nucleophilic attack on the 3' splice site by the 3' OH of the upstream exon. Protein machinery is required for splicing in vivo, and long range intron to intron and intron-exon interactions are important for splice site positioning. Group II introns are further sub-classified into groups IIA and IIB which differ in splice site consensus, distance of bulged A from 3' splice site, some tertiary interactions, and intronic ORF phylogeny." [http://www.sanger.ac.uk/Software/Rfam/browse/index.shtml]	1072666	SOFA	SOFA	sequence	2	SO	intron	group_II_intron
SO:0000835	SO:0000188	SOFA	"A part of a primary transcript." [SO:ke]	SO:0000603	"Group II introns are found in rRNA, tRNA and mRNA of organelles in fungi, plants and protists, and also in mRNA in bacteria. They are large self-splicing ribozymes and have 6 structural domains (usually designated dI to dVI). A subset of group II introns also encode essential splicing proteins in intronic ORFs. The length of these introns can therefore be up to 3kb. Splicing occurs in almost identical fashion to nuclear pre-mRNA splicing with two transesterification steps. The 2' hydroxyl of a bulged adenosine in domain VI attacks the 5' splice site, followed by nucleophilic attack on the 3' splice site by the 3' OH of the upstream exon. Protein machinery is required for splicing in vivo, and long range intron to intron and intron-exon interactions are important for splice site positioning. Group II introns are further sub-classified into groups IIA and IIB which differ in splice site consensus, distance of bulged A from 3' splice site, some tertiary interactions, and intronic ORF phylogeny." [http://www.sanger.ac.uk/Software/Rfam/browse/index.shtml]	1903710	SOFA	SOFA	sequence	3	SO	primary_transcript_region	group_II_intron
SO:0000185	SO:0000835	SOFA	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000603	"Group II introns are found in rRNA, tRNA and mRNA of organelles in fungi, plants and protists, and also in mRNA in bacteria. They are large self-splicing ribozymes and have 6 structural domains (usually designated dI to dVI). A subset of group II introns also encode essential splicing proteins in intronic ORFs. The length of these introns can therefore be up to 3kb. Splicing occurs in almost identical fashion to nuclear pre-mRNA splicing with two transesterification steps. The 2' hydroxyl of a bulged adenosine in domain VI attacks the 5' splice site, followed by nucleophilic attack on the 3' splice site by the 3' OH of the upstream exon. Protein machinery is required for splicing in vivo, and long range intron to intron and intron-exon interactions are important for splice site positioning. Group II introns are further sub-classified into groups IIA and IIB which differ in splice site consensus, distance of bulged A from 3' splice site, some tertiary interactions, and intronic ORF phylogeny." [http://www.sanger.ac.uk/Software/Rfam/browse/index.shtml]	2928182	SOFA	SOFA	sequence	4	SO	primary_transcript	group_II_intron
SO:0000833	SO:0000835	SOFA	"A region of a transcript." [SO:ke]	SO:0000603	"Group II introns are found in rRNA, tRNA and mRNA of organelles in fungi, plants and protists, and also in mRNA in bacteria. They are large self-splicing ribozymes and have 6 structural domains (usually designated dI to dVI). A subset of group II introns also encode essential splicing proteins in intronic ORFs. The length of these introns can therefore be up to 3kb. Splicing occurs in almost identical fashion to nuclear pre-mRNA splicing with two transesterification steps. The 2' hydroxyl of a bulged adenosine in domain VI attacks the 5' splice site, followed by nucleophilic attack on the 3' splice site by the 3' OH of the upstream exon. Protein machinery is required for splicing in vivo, and long range intron to intron and intron-exon interactions are important for splice site positioning. Group II introns are further sub-classified into groups IIA and IIB which differ in splice site consensus, distance of bulged A from 3' splice site, some tertiary interactions, and intronic ORF phylogeny." [http://www.sanger.ac.uk/Software/Rfam/browse/index.shtml]	2928183	SOFA	SOFA	sequence	4	SO	transcript_region	group_II_intron
SO:0000673	SO:0000185	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000603	"Group II introns are found in rRNA, tRNA and mRNA of organelles in fungi, plants and protists, and also in mRNA in bacteria. They are large self-splicing ribozymes and have 6 structural domains (usually designated dI to dVI). A subset of group II introns also encode essential splicing proteins in intronic ORFs. The length of these introns can therefore be up to 3kb. Splicing occurs in almost identical fashion to nuclear pre-mRNA splicing with two transesterification steps. The 2' hydroxyl of a bulged adenosine in domain VI attacks the 5' splice site, followed by nucleophilic attack on the 3' splice site by the 3' OH of the upstream exon. Protein machinery is required for splicing in vivo, and long range intron to intron and intron-exon interactions are important for splice site positioning. Group II introns are further sub-classified into groups IIA and IIB which differ in splice site consensus, distance of bulged A from 3' splice site, some tertiary interactions, and intronic ORF phylogeny." [http://www.sanger.ac.uk/Software/Rfam/browse/index.shtml]	4001534	SOFA	SOFA	sequence	5	SO	transcript	group_II_intron
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000603	"Group II introns are found in rRNA, tRNA and mRNA of organelles in fungi, plants and protists, and also in mRNA in bacteria. They are large self-splicing ribozymes and have 6 structural domains (usually designated dI to dVI). A subset of group II introns also encode essential splicing proteins in intronic ORFs. The length of these introns can therefore be up to 3kb. Splicing occurs in almost identical fashion to nuclear pre-mRNA splicing with two transesterification steps. The 2' hydroxyl of a bulged adenosine in domain VI attacks the 5' splice site, followed by nucleophilic attack on the 3' splice site by the 3' OH of the upstream exon. Protein machinery is required for splicing in vivo, and long range intron to intron and intron-exon interactions are important for splice site positioning. Group II introns are further sub-classified into groups IIA and IIB which differ in splice site consensus, distance of bulged A from 3' splice site, some tertiary interactions, and intronic ORF phylogeny." [http://www.sanger.ac.uk/Software/Rfam/browse/index.shtml]	4001535	SOFA	SOFA	sequence	5	SO	transcript	group_II_intron
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000603	"Group II introns are found in rRNA, tRNA and mRNA of organelles in fungi, plants and protists, and also in mRNA in bacteria. They are large self-splicing ribozymes and have 6 structural domains (usually designated dI to dVI). A subset of group II introns also encode essential splicing proteins in intronic ORFs. The length of these introns can therefore be up to 3kb. Splicing occurs in almost identical fashion to nuclear pre-mRNA splicing with two transesterification steps. The 2' hydroxyl of a bulged adenosine in domain VI attacks the 5' splice site, followed by nucleophilic attack on the 3' splice site by the 3' OH of the upstream exon. Protein machinery is required for splicing in vivo, and long range intron to intron and intron-exon interactions are important for splice site positioning. Group II introns are further sub-classified into groups IIA and IIB which differ in splice site consensus, distance of bulged A from 3' splice site, some tertiary interactions, and intronic ORF phylogeny." [http://www.sanger.ac.uk/Software/Rfam/browse/index.shtml]	4001536	SOFA	SOFA	sequence	5	SO	biological_region	group_II_intron
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000603	"Group II introns are found in rRNA, tRNA and mRNA of organelles in fungi, plants and protists, and also in mRNA in bacteria. They are large self-splicing ribozymes and have 6 structural domains (usually designated dI to dVI). A subset of group II introns also encode essential splicing proteins in intronic ORFs. The length of these introns can therefore be up to 3kb. Splicing occurs in almost identical fashion to nuclear pre-mRNA splicing with two transesterification steps. The 2' hydroxyl of a bulged adenosine in domain VI attacks the 5' splice site, followed by nucleophilic attack on the 3' splice site by the 3' OH of the upstream exon. Protein machinery is required for splicing in vivo, and long range intron to intron and intron-exon interactions are important for splice site positioning. Group II introns are further sub-classified into groups IIA and IIB which differ in splice site consensus, distance of bulged A from 3' splice site, some tertiary interactions, and intronic ORF phylogeny." [http://www.sanger.ac.uk/Software/Rfam/browse/index.shtml]	4966073	SOFA	SOFA	sequence	6	SO	gene_member_region	group_II_intron
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000603	"Group II introns are found in rRNA, tRNA and mRNA of organelles in fungi, plants and protists, and also in mRNA in bacteria. They are large self-splicing ribozymes and have 6 structural domains (usually designated dI to dVI). A subset of group II introns also encode essential splicing proteins in intronic ORFs. The length of these introns can therefore be up to 3kb. Splicing occurs in almost identical fashion to nuclear pre-mRNA splicing with two transesterification steps. The 2' hydroxyl of a bulged adenosine in domain VI attacks the 5' splice site, followed by nucleophilic attack on the 3' splice site by the 3' OH of the upstream exon. Protein machinery is required for splicing in vivo, and long range intron to intron and intron-exon interactions are important for splice site positioning. Group II introns are further sub-classified into groups IIA and IIB which differ in splice site consensus, distance of bulged A from 3' splice site, some tertiary interactions, and intronic ORF phylogeny." [http://www.sanger.ac.uk/Software/Rfam/browse/index.shtml]	6310939	SOFA	SOFA	sequence	8	SO	region	group_II_intron
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000603	"Group II introns are found in rRNA, tRNA and mRNA of organelles in fungi, plants and protists, and also in mRNA in bacteria. They are large self-splicing ribozymes and have 6 structural domains (usually designated dI to dVI). A subset of group II introns also encode essential splicing proteins in intronic ORFs. The length of these introns can therefore be up to 3kb. Splicing occurs in almost identical fashion to nuclear pre-mRNA splicing with two transesterification steps. The 2' hydroxyl of a bulged adenosine in domain VI attacks the 5' splice site, followed by nucleophilic attack on the 3' splice site by the 3' OH of the upstream exon. Protein machinery is required for splicing in vivo, and long range intron to intron and intron-exon interactions are important for splice site positioning. Group II introns are further sub-classified into groups IIA and IIB which differ in splice site consensus, distance of bulged A from 3' splice site, some tertiary interactions, and intronic ORF phylogeny." [http://www.sanger.ac.uk/Software/Rfam/browse/index.shtml]	5741001	SOFA	SOFA	sequence	7	SO	biological_region	group_II_intron
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000603	"Group II introns are found in rRNA, tRNA and mRNA of organelles in fungi, plants and protists, and also in mRNA in bacteria. They are large self-splicing ribozymes and have 6 structural domains (usually designated dI to dVI). A subset of group II introns also encode essential splicing proteins in intronic ORFs. The length of these introns can therefore be up to 3kb. Splicing occurs in almost identical fashion to nuclear pre-mRNA splicing with two transesterification steps. The 2' hydroxyl of a bulged adenosine in domain VI attacks the 5' splice site, followed by nucleophilic attack on the 3' splice site by the 3' OH of the upstream exon. Protein machinery is required for splicing in vivo, and long range intron to intron and intron-exon interactions are important for splice site positioning. Group II introns are further sub-classified into groups IIA and IIB which differ in splice site consensus, distance of bulged A from 3' splice site, some tertiary interactions, and intronic ORF phylogeny." [http://www.sanger.ac.uk/Software/Rfam/browse/index.shtml]	6550257	SOFA	SOFA	sequence	9	SO	sequence_feature	group_II_intron
SO:0000604	\N	\N	"Edited mRNA sequence mediated by a single guide RNA (SO:0000602)." [http://dna.kdna.ucla.edu/rna/index.aspx]	SO:0000604	"Edited mRNA sequence mediated by a single guide RNA (SO:0000602)." [http://dna.kdna.ucla.edu/rna/index.aspx]	45544	\N	\N	sequence	0	SO	editing_block	editing_block
SO:0000579	SO:0000604	\N	"A locatable feature on a transcript that is edited." [SO:ma]	SO:0000604	"Edited mRNA sequence mediated by a single guide RNA (SO:0000602)." [http://dna.kdna.ucla.edu/rna/index.aspx]	490193	\N	\N	sequence	1	SO	edited_transcript_feature	editing_block
SO:0000833	SO:0000579	\N	"A region of a transcript." [SO:ke]	SO:0000604	"Edited mRNA sequence mediated by a single guide RNA (SO:0000602)." [http://dna.kdna.ucla.edu/rna/index.aspx]	1072667	\N	SOFA	sequence	2	SO	transcript_region	editing_block
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000604	"Edited mRNA sequence mediated by a single guide RNA (SO:0000602)." [http://dna.kdna.ucla.edu/rna/index.aspx]	1903711	SOFA	SOFA	sequence	3	SO	transcript	editing_block
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000604	"Edited mRNA sequence mediated by a single guide RNA (SO:0000602)." [http://dna.kdna.ucla.edu/rna/index.aspx]	1903712	SOFA	SOFA	sequence	3	SO	biological_region	editing_block
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000604	"Edited mRNA sequence mediated by a single guide RNA (SO:0000602)." [http://dna.kdna.ucla.edu/rna/index.aspx]	2928184	SOFA	SOFA	sequence	4	SO	gene_member_region	editing_block
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000604	"Edited mRNA sequence mediated by a single guide RNA (SO:0000602)." [http://dna.kdna.ucla.edu/rna/index.aspx]	4966075	SOFA	SOFA	sequence	6	SO	region	editing_block
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000604	"Edited mRNA sequence mediated by a single guide RNA (SO:0000602)." [http://dna.kdna.ucla.edu/rna/index.aspx]	4001537	SOFA	SOFA	sequence	5	SO	biological_region	editing_block
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000604	"Edited mRNA sequence mediated by a single guide RNA (SO:0000602)." [http://dna.kdna.ucla.edu/rna/index.aspx]	5180689	SOFA	SOFA	sequence	7	SO	sequence_feature	editing_block
SO:0000605	\N	SOFA	"A region containing or overlapping no genes that is bounded on either side by a gene, or bounded by a gene and the end of the chromosome." [SO:cjm]	SO:0000605	"A region containing or overlapping no genes that is bounded on either side by a gene, or bounded by a gene and the end of the chromosome." [SO:cjm]	45545	\N	SOFA	sequence	0	SO	intergenic_region	intergenic_region
SO:0001411	SO:0000605	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000605	"A region containing or overlapping no genes that is bounded on either side by a gene, or bounded by a gene and the end of the chromosome." [SO:cjm]	490194	SOFA	SOFA	sequence	1	SO	biological_region	intergenic_region
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000605	"A region containing or overlapping no genes that is bounded on either side by a gene, or bounded by a gene and the end of the chromosome." [SO:cjm]	1072668	SOFA	SOFA	sequence	2	SO	region	intergenic_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000605	"A region containing or overlapping no genes that is bounded on either side by a gene, or bounded by a gene and the end of the chromosome." [SO:cjm]	1903713	SOFA	SOFA	sequence	3	SO	sequence_feature	intergenic_region
SO:0000606	\N	\N	"Edited mRNA sequence mediated by two or more overlapping guide RNAs (SO:0000602)." [http://dna.kdna.ucla.edu/rna/index.aspx]	SO:0000606	"Edited mRNA sequence mediated by two or more overlapping guide RNAs (SO:0000602)." [http://dna.kdna.ucla.edu/rna/index.aspx]	45546	\N	\N	sequence	0	SO	editing_domain	editing_domain
SO:0000579	SO:0000606	\N	"A locatable feature on a transcript that is edited." [SO:ma]	SO:0000606	"Edited mRNA sequence mediated by two or more overlapping guide RNAs (SO:0000602)." [http://dna.kdna.ucla.edu/rna/index.aspx]	490195	\N	\N	sequence	1	SO	edited_transcript_feature	editing_domain
SO:0000833	SO:0000579	\N	"A region of a transcript." [SO:ke]	SO:0000606	"Edited mRNA sequence mediated by two or more overlapping guide RNAs (SO:0000602)." [http://dna.kdna.ucla.edu/rna/index.aspx]	1072669	\N	SOFA	sequence	2	SO	transcript_region	editing_domain
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000606	"Edited mRNA sequence mediated by two or more overlapping guide RNAs (SO:0000602)." [http://dna.kdna.ucla.edu/rna/index.aspx]	1903714	SOFA	SOFA	sequence	3	SO	transcript	editing_domain
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000606	"Edited mRNA sequence mediated by two or more overlapping guide RNAs (SO:0000602)." [http://dna.kdna.ucla.edu/rna/index.aspx]	1903715	SOFA	SOFA	sequence	3	SO	biological_region	editing_domain
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000606	"Edited mRNA sequence mediated by two or more overlapping guide RNAs (SO:0000602)." [http://dna.kdna.ucla.edu/rna/index.aspx]	2928186	SOFA	SOFA	sequence	4	SO	gene_member_region	editing_domain
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000606	"Edited mRNA sequence mediated by two or more overlapping guide RNAs (SO:0000602)." [http://dna.kdna.ucla.edu/rna/index.aspx]	4966076	SOFA	SOFA	sequence	6	SO	region	editing_domain
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000606	"Edited mRNA sequence mediated by two or more overlapping guide RNAs (SO:0000602)." [http://dna.kdna.ucla.edu/rna/index.aspx]	4001539	SOFA	SOFA	sequence	5	SO	biological_region	editing_domain
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000606	"Edited mRNA sequence mediated by two or more overlapping guide RNAs (SO:0000602)." [http://dna.kdna.ucla.edu/rna/index.aspx]	5180690	SOFA	SOFA	sequence	7	SO	sequence_feature	editing_domain
SO:0000607	\N	\N	"The region of an edited transcript that will not be edited." [http://dna.kdna.ucla.edu/rna/index.aspx]	SO:0000607	"The region of an edited transcript that will not be edited." [http://dna.kdna.ucla.edu/rna/index.aspx]	45547	\N	\N	sequence	0	SO	unedited_region	unedited_region
SO:0000579	SO:0000607	\N	"A locatable feature on a transcript that is edited." [SO:ma]	SO:0000607	"The region of an edited transcript that will not be edited." [http://dna.kdna.ucla.edu/rna/index.aspx]	490196	\N	\N	sequence	1	SO	edited_transcript_feature	unedited_region
SO:0000833	SO:0000579	\N	"A region of a transcript." [SO:ke]	SO:0000607	"The region of an edited transcript that will not be edited." [http://dna.kdna.ucla.edu/rna/index.aspx]	1072670	\N	SOFA	sequence	2	SO	transcript_region	unedited_region
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000607	"The region of an edited transcript that will not be edited." [http://dna.kdna.ucla.edu/rna/index.aspx]	1903716	SOFA	SOFA	sequence	3	SO	transcript	unedited_region
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000607	"The region of an edited transcript that will not be edited." [http://dna.kdna.ucla.edu/rna/index.aspx]	1903717	SOFA	SOFA	sequence	3	SO	biological_region	unedited_region
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000607	"The region of an edited transcript that will not be edited." [http://dna.kdna.ucla.edu/rna/index.aspx]	2928188	SOFA	SOFA	sequence	4	SO	gene_member_region	unedited_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000607	"The region of an edited transcript that will not be edited." [http://dna.kdna.ucla.edu/rna/index.aspx]	4966077	SOFA	SOFA	sequence	6	SO	region	unedited_region
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000607	"The region of an edited transcript that will not be edited." [http://dna.kdna.ucla.edu/rna/index.aspx]	4001541	SOFA	SOFA	sequence	5	SO	biological_region	unedited_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000607	"The region of an edited transcript that will not be edited." [http://dna.kdna.ucla.edu/rna/index.aspx]	5180691	SOFA	SOFA	sequence	7	SO	sequence_feature	unedited_region
SO:0000608	\N	\N	"" []	SO:0000608	"" []	45548	\N	\N	sequence	0	SO	H_ACA_box_snoRNA_encoding	H_ACA_box_snoRNA_encoding
SO:0000578	SO:0000608	\N	"" []	SO:0000608	"" []	490197	\N	\N	sequence	1	SO	snoRNA_encoding	H_ACA_box_snoRNA_encoding
SO:0000011	SO:0000578	\N	"" []	SO:0000608	"" []	1072671	\N	\N	sequence	2	SO	non_protein_coding	H_ACA_box_snoRNA_encoding
SO:0000401	SO:0000011	\N	"" []	SO:0000608	"" []	1903718	\N	\N	sequence	3	SO	gene_attribute	H_ACA_box_snoRNA_encoding
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000608	"" []	2928190	\N	\N	sequence	4	SO	feature_attribute	H_ACA_box_snoRNA_encoding
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000608	"" []	4001543	\N	\N	sequence	5	SO	sequence_attribute	H_ACA_box_snoRNA_encoding
SO:0000609	\N	\N	"The string of non-encoded U's at the 3' end of a guide RNA (SO:0000602)." [http://www.rna.ucla.edu/]	SO:0000609	"The string of non-encoded U's at the 3' end of a guide RNA (SO:0000602)." [http://www.rna.ucla.edu/]	45549	\N	\N	sequence	0	SO	oligo_U_tail	oligo_U_tail
SO:0001411	SO:0000609	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000609	"The string of non-encoded U's at the 3' end of a guide RNA (SO:0000602)." [http://www.rna.ucla.edu/]	490198	\N	SOFA	sequence	1	SO	biological_region	oligo_U_tail
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000609	"The string of non-encoded U's at the 3' end of a guide RNA (SO:0000602)." [http://www.rna.ucla.edu/]	1072672	SOFA	SOFA	sequence	2	SO	region	oligo_U_tail
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000609	"The string of non-encoded U's at the 3' end of a guide RNA (SO:0000602)." [http://www.rna.ucla.edu/]	1903719	SOFA	SOFA	sequence	3	SO	sequence_feature	oligo_U_tail
SO:0000610	\N	SOFA	"Sequence of about 100 nucleotides of A added to the 3' end of most eukaryotic mRNAs." [SO:ke]	SO:0000610	"Sequence of about 100 nucleotides of A added to the 3' end of most eukaryotic mRNAs." [SO:ke]	45550	\N	SOFA	sequence	0	SO	polyA_sequence	polyA_sequence
SO:0001411	SO:0000610	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000610	"Sequence of about 100 nucleotides of A added to the 3' end of most eukaryotic mRNAs." [SO:ke]	490199	SOFA	SOFA	sequence	1	SO	biological_region	polyA_sequence
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000610	"Sequence of about 100 nucleotides of A added to the 3' end of most eukaryotic mRNAs." [SO:ke]	1072673	SOFA	SOFA	sequence	2	SO	region	polyA_sequence
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000610	"Sequence of about 100 nucleotides of A added to the 3' end of most eukaryotic mRNAs." [SO:ke]	1903720	SOFA	SOFA	sequence	3	SO	sequence_feature	polyA_sequence
SO:0000611	\N	SOFA	"A pyrimidine rich sequence near the 3' end of an intron to which the 5'end becomes covalently bound during nuclear splicing. The resulting structure resembles a lariat." [SO:ke]	SO:0000611	"A pyrimidine rich sequence near the 3' end of an intron to which the 5'end becomes covalently bound during nuclear splicing. The resulting structure resembles a lariat." [SO:ke]	45551	\N	SOFA	sequence	0	SO	branch_site	branch_site
SO:0000841	SO:0000611	SOFA	"A region within an intron." [SO:ke]	SO:0000611	"A pyrimidine rich sequence near the 3' end of an intron to which the 5'end becomes covalently bound during nuclear splicing. The resulting structure resembles a lariat." [SO:ke]	490200	SOFA	SOFA	sequence	1	SO	spliceosomal_intron_region	branch_site
SO:0000662	SO:0000841	SOFA	"An intron which is spliced by the spliceosome." [SO:ke]	SO:0000611	"A pyrimidine rich sequence near the 3' end of an intron to which the 5'end becomes covalently bound during nuclear splicing. The resulting structure resembles a lariat." [SO:ke]	1072674	SOFA	SOFA	sequence	2	SO	spliceosomal_intron	branch_site
SO:0000835	SO:0000841	SOFA	"A part of a primary transcript." [SO:ke]	SO:0000611	"A pyrimidine rich sequence near the 3' end of an intron to which the 5'end becomes covalently bound during nuclear splicing. The resulting structure resembles a lariat." [SO:ke]	1072675	SOFA	SOFA	sequence	2	SO	primary_transcript_region	branch_site
SO:0000188	SO:0000662	SOFA	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000611	"A pyrimidine rich sequence near the 3' end of an intron to which the 5'end becomes covalently bound during nuclear splicing. The resulting structure resembles a lariat." [SO:ke]	1903721	SOFA	SOFA	sequence	3	SO	intron	branch_site
SO:0000185	SO:0000835	SOFA	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000611	"A pyrimidine rich sequence near the 3' end of an intron to which the 5'end becomes covalently bound during nuclear splicing. The resulting structure resembles a lariat." [SO:ke]	4001544	SOFA	SOFA	sequence	5	SO	primary_transcript	branch_site
SO:0000833	SO:0000835	SOFA	"A region of a transcript." [SO:ke]	SO:0000611	"A pyrimidine rich sequence near the 3' end of an intron to which the 5'end becomes covalently bound during nuclear splicing. The resulting structure resembles a lariat." [SO:ke]	4001545	SOFA	SOFA	sequence	5	SO	transcript_region	branch_site
SO:0000835	SO:0000188	SOFA	"A part of a primary transcript." [SO:ke]	SO:0000611	"A pyrimidine rich sequence near the 3' end of an intron to which the 5'end becomes covalently bound during nuclear splicing. The resulting structure resembles a lariat." [SO:ke]	2928191	SOFA	SOFA	sequence	4	SO	primary_transcript_region	branch_site
SO:0000673	SO:0000185	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000611	"A pyrimidine rich sequence near the 3' end of an intron to which the 5'end becomes covalently bound during nuclear splicing. The resulting structure resembles a lariat." [SO:ke]	4132299	SOFA	SOFA	sequence	6	SO	transcript	branch_site
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000611	"A pyrimidine rich sequence near the 3' end of an intron to which the 5'end becomes covalently bound during nuclear splicing. The resulting structure resembles a lariat." [SO:ke]	4132300	SOFA	SOFA	sequence	6	SO	transcript	branch_site
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000611	"A pyrimidine rich sequence near the 3' end of an intron to which the 5'end becomes covalently bound during nuclear splicing. The resulting structure resembles a lariat." [SO:ke]	4132301	SOFA	SOFA	sequence	6	SO	biological_region	branch_site
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000611	"A pyrimidine rich sequence near the 3' end of an intron to which the 5'end becomes covalently bound during nuclear splicing. The resulting structure resembles a lariat." [SO:ke]	5180692	SOFA	SOFA	sequence	7	SO	gene_member_region	branch_site
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000611	"A pyrimidine rich sequence near the 3' end of an intron to which the 5'end becomes covalently bound during nuclear splicing. The resulting structure resembles a lariat." [SO:ke]	6550258	SOFA	SOFA	sequence	9	SO	region	branch_site
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000611	"A pyrimidine rich sequence near the 3' end of an intron to which the 5'end becomes covalently bound during nuclear splicing. The resulting structure resembles a lariat." [SO:ke]	5996392	SOFA	SOFA	sequence	8	SO	biological_region	branch_site
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000611	"A pyrimidine rich sequence near the 3' end of an intron to which the 5'end becomes covalently bound during nuclear splicing. The resulting structure resembles a lariat." [SO:ke]	6807574	SOFA	SOFA	sequence	10	SO	sequence_feature	branch_site
SO:0000612	\N	SOFA	"The polypyrimidine tract is one of the cis-acting sequence elements directing intron removal in pre-mRNA splicing." [http://nar.oupjournals.org/cgi/content/full/25/4/888]	SO:0000612	"The polypyrimidine tract is one of the cis-acting sequence elements directing intron removal in pre-mRNA splicing." [http://nar.oupjournals.org/cgi/content/full/25/4/888]	45552	\N	SOFA	sequence	0	SO	polypyrimidine_tract	polypyrimidine_tract
SO:0000841	SO:0000612	SOFA	"A region within an intron." [SO:ke]	SO:0000612	"The polypyrimidine tract is one of the cis-acting sequence elements directing intron removal in pre-mRNA splicing." [http://nar.oupjournals.org/cgi/content/full/25/4/888]	490201	SOFA	SOFA	sequence	1	SO	spliceosomal_intron_region	polypyrimidine_tract
SO:0000662	SO:0000841	SOFA	"An intron which is spliced by the spliceosome." [SO:ke]	SO:0000612	"The polypyrimidine tract is one of the cis-acting sequence elements directing intron removal in pre-mRNA splicing." [http://nar.oupjournals.org/cgi/content/full/25/4/888]	1072676	SOFA	SOFA	sequence	2	SO	spliceosomal_intron	polypyrimidine_tract
SO:0000835	SO:0000841	SOFA	"A part of a primary transcript." [SO:ke]	SO:0000612	"The polypyrimidine tract is one of the cis-acting sequence elements directing intron removal in pre-mRNA splicing." [http://nar.oupjournals.org/cgi/content/full/25/4/888]	1072677	SOFA	SOFA	sequence	2	SO	primary_transcript_region	polypyrimidine_tract
SO:0000188	SO:0000662	SOFA	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000612	"The polypyrimidine tract is one of the cis-acting sequence elements directing intron removal in pre-mRNA splicing." [http://nar.oupjournals.org/cgi/content/full/25/4/888]	1903724	SOFA	SOFA	sequence	3	SO	intron	polypyrimidine_tract
SO:0000185	SO:0000835	SOFA	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000612	"The polypyrimidine tract is one of the cis-acting sequence elements directing intron removal in pre-mRNA splicing." [http://nar.oupjournals.org/cgi/content/full/25/4/888]	4001548	SOFA	SOFA	sequence	5	SO	primary_transcript	polypyrimidine_tract
SO:0000833	SO:0000835	SOFA	"A region of a transcript." [SO:ke]	SO:0000612	"The polypyrimidine tract is one of the cis-acting sequence elements directing intron removal in pre-mRNA splicing." [http://nar.oupjournals.org/cgi/content/full/25/4/888]	4001549	SOFA	SOFA	sequence	5	SO	transcript_region	polypyrimidine_tract
SO:0000835	SO:0000188	SOFA	"A part of a primary transcript." [SO:ke]	SO:0000612	"The polypyrimidine tract is one of the cis-acting sequence elements directing intron removal in pre-mRNA splicing." [http://nar.oupjournals.org/cgi/content/full/25/4/888]	2928195	SOFA	SOFA	sequence	4	SO	primary_transcript_region	polypyrimidine_tract
SO:0000673	SO:0000185	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000612	"The polypyrimidine tract is one of the cis-acting sequence elements directing intron removal in pre-mRNA splicing." [http://nar.oupjournals.org/cgi/content/full/25/4/888]	4132302	SOFA	SOFA	sequence	6	SO	transcript	polypyrimidine_tract
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000612	"The polypyrimidine tract is one of the cis-acting sequence elements directing intron removal in pre-mRNA splicing." [http://nar.oupjournals.org/cgi/content/full/25/4/888]	4132303	SOFA	SOFA	sequence	6	SO	transcript	polypyrimidine_tract
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000612	"The polypyrimidine tract is one of the cis-acting sequence elements directing intron removal in pre-mRNA splicing." [http://nar.oupjournals.org/cgi/content/full/25/4/888]	4132304	SOFA	SOFA	sequence	6	SO	biological_region	polypyrimidine_tract
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000612	"The polypyrimidine tract is one of the cis-acting sequence elements directing intron removal in pre-mRNA splicing." [http://nar.oupjournals.org/cgi/content/full/25/4/888]	5180694	SOFA	SOFA	sequence	7	SO	gene_member_region	polypyrimidine_tract
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000612	"The polypyrimidine tract is one of the cis-acting sequence elements directing intron removal in pre-mRNA splicing." [http://nar.oupjournals.org/cgi/content/full/25/4/888]	6550259	SOFA	SOFA	sequence	9	SO	region	polypyrimidine_tract
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000612	"The polypyrimidine tract is one of the cis-acting sequence elements directing intron removal in pre-mRNA splicing." [http://nar.oupjournals.org/cgi/content/full/25/4/888]	5996394	SOFA	SOFA	sequence	8	SO	biological_region	polypyrimidine_tract
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000612	"The polypyrimidine tract is one of the cis-acting sequence elements directing intron removal in pre-mRNA splicing." [http://nar.oupjournals.org/cgi/content/full/25/4/888]	6807575	SOFA	SOFA	sequence	10	SO	sequence_feature	polypyrimidine_tract
SO:0000613	\N	\N	"A DNA sequence to which bacterial RNA polymerase binds, to begin transcription." [SO:ke]	SO:0000613	"A DNA sequence to which bacterial RNA polymerase binds, to begin transcription." [SO:ke]	45553	\N	\N	sequence	0	SO	bacterial_RNApol_promoter	bacterial_RNApol_promoter
SO:0000752	SO:0000613	\N	"" []	SO:0000613	"A DNA sequence to which bacterial RNA polymerase binds, to begin transcription." [SO:ke]	490202	\N	SOFA	sequence	1	SO	gene_group_regulatory_region	bacterial_RNApol_promoter
SO:0001203	SO:0000613	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0000613	"A DNA sequence to which bacterial RNA polymerase binds, to begin transcription." [SO:ke]	490203	\N	\N	sequence	1	SO	RNA_polymerase_promoter	bacterial_RNApol_promoter
SO:0001679	SO:0000752	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000613	"A DNA sequence to which bacterial RNA polymerase binds, to begin transcription." [SO:ke]	1072678	SOFA	SOFA	sequence	2	SO	transcription_regulatory_region	bacterial_RNApol_promoter
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0000613	"A DNA sequence to which bacterial RNA polymerase binds, to begin transcription." [SO:ke]	1072679	\N	SOFA	sequence	2	SO	promoter	bacterial_RNApol_promoter
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000613	"A DNA sequence to which bacterial RNA polymerase binds, to begin transcription." [SO:ke]	4001553	SOFA	SOFA	sequence	5	SO	regulatory_region	bacterial_RNApol_promoter
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0000613	"A DNA sequence to which bacterial RNA polymerase binds, to begin transcription." [SO:ke]	1903728	SOFA	SOFA	sequence	3	SO	transcriptional_cis_regulatory_region	bacterial_RNApol_promoter
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0000613	"A DNA sequence to which bacterial RNA polymerase binds, to begin transcription." [SO:ke]	4132305	SOFA	SOFA	sequence	6	SO	gene_member_region	bacterial_RNApol_promoter
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000613	"A DNA sequence to which bacterial RNA polymerase binds, to begin transcription." [SO:ke]	2928200	SOFA	SOFA	sequence	4	SO	transcription_regulatory_region	bacterial_RNApol_promoter
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000613	"A DNA sequence to which bacterial RNA polymerase binds, to begin transcription." [SO:ke]	5180696	SOFA	SOFA	sequence	7	SO	biological_region	bacterial_RNApol_promoter
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000613	"A DNA sequence to which bacterial RNA polymerase binds, to begin transcription." [SO:ke]	5996396	SOFA	SOFA	sequence	8	SO	region	bacterial_RNApol_promoter
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000613	"A DNA sequence to which bacterial RNA polymerase binds, to begin transcription." [SO:ke]	6550260	SOFA	SOFA	sequence	9	SO	sequence_feature	bacterial_RNApol_promoter
SO:0000614	\N	\N	"A terminator signal for bacterial transcription." [SO:ke]	SO:0000614	"A terminator signal for bacterial transcription." [SO:ke]	45554	\N	\N	sequence	0	SO	bacterial_terminator	bacterial_terminator
SO:0000141	SO:0000614	\N	"The sequence of DNA located either at the end of the transcript that causes RNA polymerase to terminate transcription." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000614	"A terminator signal for bacterial transcription." [SO:ke]	490204	\N	SOFA	sequence	1	SO	terminator	bacterial_terminator
SO:0000752	SO:0000614	\N	"" []	SO:0000614	"A terminator signal for bacterial transcription." [SO:ke]	490205	\N	SOFA	sequence	1	SO	gene_group_regulatory_region	bacterial_terminator
SO:0000673	SO:0000141	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000614	"A terminator signal for bacterial transcription." [SO:ke]	1072680	SOFA	SOFA	sequence	2	SO	transcript	bacterial_terminator
SO:0001679	SO:0000141	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000614	"A terminator signal for bacterial transcription." [SO:ke]	1072681	SOFA	SOFA	sequence	2	SO	transcription_regulatory_region	bacterial_terminator
SO:0001679	SO:0000752	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000614	"A terminator signal for bacterial transcription." [SO:ke]	1072682	SOFA	SOFA	sequence	2	SO	transcription_regulatory_region	bacterial_terminator
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000614	"A terminator signal for bacterial transcription." [SO:ke]	1903729	SOFA	SOFA	sequence	3	SO	gene_member_region	bacterial_terminator
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000614	"A terminator signal for bacterial transcription." [SO:ke]	1903730	SOFA	SOFA	sequence	3	SO	regulatory_region	bacterial_terminator
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000614	"A terminator signal for bacterial transcription." [SO:ke]	4001555	SOFA	SOFA	sequence	5	SO	biological_region	bacterial_terminator
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0000614	"A terminator signal for bacterial transcription." [SO:ke]	2928202	SOFA	SOFA	sequence	4	SO	gene_member_region	bacterial_terminator
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000614	"A terminator signal for bacterial transcription." [SO:ke]	4385741	SOFA	SOFA	sequence	6	SO	region	bacterial_terminator
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000614	"A terminator signal for bacterial transcription." [SO:ke]	5407403	SOFA	SOFA	sequence	7	SO	sequence_feature	bacterial_terminator
SO:0000615	\N	\N	"A terminator signal for RNA polymerase III transcription." [SO:ke]	SO:0000615	"A terminator signal for RNA polymerase III transcription." [SO:ke]	45555	\N	\N	sequence	0	SO	terminator_of_type_2_RNApol_III_promoter	terminator_of_type_2_RNApol_III_promoter
SO:0000951	SO:0000615	\N	"" []	SO:0000615	"A terminator signal for RNA polymerase III transcription." [SO:ke]	490206	\N	\N	sequence	1	SO	eukaryotic_terminator	terminator_of_type_2_RNApol_III_promoter
SO:0000141	SO:0000951	\N	"The sequence of DNA located either at the end of the transcript that causes RNA polymerase to terminate transcription." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000615	"A terminator signal for RNA polymerase III transcription." [SO:ke]	1072683	\N	SOFA	sequence	2	SO	terminator	terminator_of_type_2_RNApol_III_promoter
SO:0000673	SO:0000141	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000615	"A terminator signal for RNA polymerase III transcription." [SO:ke]	1903731	SOFA	SOFA	sequence	3	SO	transcript	terminator_of_type_2_RNApol_III_promoter
SO:0001679	SO:0000141	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000615	"A terminator signal for RNA polymerase III transcription." [SO:ke]	1903732	SOFA	SOFA	sequence	3	SO	transcription_regulatory_region	terminator_of_type_2_RNApol_III_promoter
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000615	"A terminator signal for RNA polymerase III transcription." [SO:ke]	2928203	SOFA	SOFA	sequence	4	SO	gene_member_region	terminator_of_type_2_RNApol_III_promoter
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000615	"A terminator signal for RNA polymerase III transcription." [SO:ke]	2928204	SOFA	SOFA	sequence	4	SO	regulatory_region	terminator_of_type_2_RNApol_III_promoter
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000615	"A terminator signal for RNA polymerase III transcription." [SO:ke]	4966085	SOFA	SOFA	sequence	6	SO	biological_region	terminator_of_type_2_RNApol_III_promoter
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0000615	"A terminator signal for RNA polymerase III transcription." [SO:ke]	4001557	SOFA	SOFA	sequence	5	SO	gene_member_region	terminator_of_type_2_RNApol_III_promoter
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000615	"A terminator signal for RNA polymerase III transcription." [SO:ke]	5407404	SOFA	SOFA	sequence	7	SO	region	terminator_of_type_2_RNApol_III_promoter
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000615	"A terminator signal for RNA polymerase III transcription." [SO:ke]	6146628	SOFA	SOFA	sequence	8	SO	sequence_feature	terminator_of_type_2_RNApol_III_promoter
SO:0000616	\N	SOFA	"The base where transcription ends." [SO:ke]	SO:0000616	"The base where transcription ends." [SO:ke]	45556	\N	SOFA	sequence	0	SO	transcription_end_site	transcription_end_site
SO:0000835	SO:0000616	SOFA	"A part of a primary transcript." [SO:ke]	SO:0000616	"The base where transcription ends." [SO:ke]	490207	SOFA	SOFA	sequence	1	SO	primary_transcript_region	transcription_end_site
SO:0000185	SO:0000835	SOFA	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000616	"The base where transcription ends." [SO:ke]	1072684	SOFA	SOFA	sequence	2	SO	primary_transcript	transcription_end_site
SO:0000833	SO:0000835	SOFA	"A region of a transcript." [SO:ke]	SO:0000616	"The base where transcription ends." [SO:ke]	1072685	SOFA	SOFA	sequence	2	SO	transcript_region	transcription_end_site
SO:0000673	SO:0000185	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000616	"The base where transcription ends." [SO:ke]	1903733	SOFA	SOFA	sequence	3	SO	transcript	transcription_end_site
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000616	"The base where transcription ends." [SO:ke]	1903734	SOFA	SOFA	sequence	3	SO	transcript	transcription_end_site
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000616	"The base where transcription ends." [SO:ke]	1903735	SOFA	SOFA	sequence	3	SO	biological_region	transcription_end_site
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000616	"The base where transcription ends." [SO:ke]	2928205	SOFA	SOFA	sequence	4	SO	gene_member_region	transcription_end_site
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000616	"The base where transcription ends." [SO:ke]	4966086	SOFA	SOFA	sequence	6	SO	region	transcription_end_site
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000616	"The base where transcription ends." [SO:ke]	4001558	SOFA	SOFA	sequence	5	SO	biological_region	transcription_end_site
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000616	"The base where transcription ends." [SO:ke]	5180697	SOFA	SOFA	sequence	7	SO	sequence_feature	transcription_end_site
SO:0000617	\N	\N	"" []	SO:0000617	"" []	45557	\N	\N	sequence	0	SO	RNApol_III_promoter_type_1	RNApol_III_promoter_type_1
SO:0000171	SO:0000617	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase III binds, to begin transcription." [SO:ke]	SO:0000617	"" []	490208	\N	\N	sequence	1	SO	RNApol_III_promoter	RNApol_III_promoter_type_1
SO:0001203	SO:0000171	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0000617	"" []	1072686	\N	\N	sequence	2	SO	RNA_polymerase_promoter	RNApol_III_promoter_type_1
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0000617	"" []	1903736	\N	SOFA	sequence	3	SO	promoter	RNApol_III_promoter_type_1
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0000617	"" []	2928207	SOFA	SOFA	sequence	4	SO	transcriptional_cis_regulatory_region	RNApol_III_promoter_type_1
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000617	"" []	4001560	SOFA	SOFA	sequence	5	SO	transcription_regulatory_region	RNApol_III_promoter_type_1
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000617	"" []	4966087	SOFA	SOFA	sequence	6	SO	regulatory_region	RNApol_III_promoter_type_1
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0000617	"" []	5741005	SOFA	SOFA	sequence	7	SO	gene_member_region	RNApol_III_promoter_type_1
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000617	"" []	6310940	SOFA	SOFA	sequence	8	SO	biological_region	RNApol_III_promoter_type_1
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000617	"" []	6699307	SOFA	SOFA	sequence	9	SO	region	RNApol_III_promoter_type_1
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000617	"" []	6948072	SOFA	SOFA	sequence	10	SO	sequence_feature	RNApol_III_promoter_type_1
SO:0000618	\N	\N	"" []	SO:0000618	"" []	45558	\N	\N	sequence	0	SO	RNApol_III_promoter_type_2	RNApol_III_promoter_type_2
SO:0000171	SO:0000618	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase III binds, to begin transcription." [SO:ke]	SO:0000618	"" []	490209	\N	\N	sequence	1	SO	RNApol_III_promoter	RNApol_III_promoter_type_2
SO:0001203	SO:0000171	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0000618	"" []	1072687	\N	\N	sequence	2	SO	RNA_polymerase_promoter	RNApol_III_promoter_type_2
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0000618	"" []	1903737	\N	SOFA	sequence	3	SO	promoter	RNApol_III_promoter_type_2
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0000618	"" []	2928208	SOFA	SOFA	sequence	4	SO	transcriptional_cis_regulatory_region	RNApol_III_promoter_type_2
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000618	"" []	4001561	SOFA	SOFA	sequence	5	SO	transcription_regulatory_region	RNApol_III_promoter_type_2
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000618	"" []	4966088	SOFA	SOFA	sequence	6	SO	regulatory_region	RNApol_III_promoter_type_2
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0000618	"" []	5741006	SOFA	SOFA	sequence	7	SO	gene_member_region	RNApol_III_promoter_type_2
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000618	"" []	6310941	SOFA	SOFA	sequence	8	SO	biological_region	RNApol_III_promoter_type_2
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000618	"" []	6699308	SOFA	SOFA	sequence	9	SO	region	RNApol_III_promoter_type_2
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000618	"" []	6948073	SOFA	SOFA	sequence	10	SO	sequence_feature	RNApol_III_promoter_type_2
SO:0000619	\N	\N	"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence TGGCnnAGTGG." [SO:ke]	SO:0000619	"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence TGGCnnAGTGG." [SO:ke]	45559	\N	\N	sequence	0	SO	A_box	A_box
SO:0001660	SO:0000619	\N	"" []	SO:0000619	"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence TGGCnnAGTGG." [SO:ke]	490210	\N	\N	sequence	1	SO	core_promoter_element	A_box
SO:0001659	SO:0001660	\N	"" []	SO:0000619	"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence TGGCnnAGTGG." [SO:ke]	1072688	\N	\N	sequence	2	SO	promoter_element	A_box
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0000619	"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence TGGCnnAGTGG." [SO:ke]	1903738	\N	\N	sequence	3	SO	DNA_motif	A_box
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0000619	"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence TGGCnnAGTGG." [SO:ke]	2928209	\N	SOFA	sequence	4	SO	nucleotide_motif	A_box
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0000619	"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence TGGCnnAGTGG." [SO:ke]	4001562	SOFA	SOFA	sequence	5	SO	sequence_motif	A_box
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000619	"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence TGGCnnAGTGG." [SO:ke]	4966089	SOFA	SOFA	sequence	6	SO	biological_region	A_box
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000619	"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence TGGCnnAGTGG." [SO:ke]	5741007	SOFA	SOFA	sequence	7	SO	region	A_box
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000619	"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence TGGCnnAGTGG." [SO:ke]	6310942	SOFA	SOFA	sequence	8	SO	sequence_feature	A_box
SO:0000620	\N	\N	"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence AGGTTCCAnnCC." [SO:ke]	SO:0000620	"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence AGGTTCCAnnCC." [SO:ke]	45560	\N	\N	sequence	0	SO	B_box	B_box
SO:0000618	SO:0000620	\N	"" []	SO:0000620	"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence AGGTTCCAnnCC." [SO:ke]	490211	\N	\N	sequence	1	SO	RNApol_III_promoter_type_2	B_box
SO:0001660	SO:0000620	\N	"" []	SO:0000620	"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence AGGTTCCAnnCC." [SO:ke]	490212	\N	\N	sequence	1	SO	core_promoter_element	B_box
SO:0000171	SO:0000618	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase III binds, to begin transcription." [SO:ke]	SO:0000620	"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence AGGTTCCAnnCC." [SO:ke]	1072689	\N	\N	sequence	2	SO	RNApol_III_promoter	B_box
SO:0001659	SO:0001660	\N	"" []	SO:0000620	"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence AGGTTCCAnnCC." [SO:ke]	1072690	\N	\N	sequence	2	SO	promoter_element	B_box
SO:0001203	SO:0000171	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0000620	"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence AGGTTCCAnnCC." [SO:ke]	1903739	\N	\N	sequence	3	SO	RNA_polymerase_promoter	B_box
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0000620	"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence AGGTTCCAnnCC." [SO:ke]	1903740	\N	\N	sequence	3	SO	DNA_motif	B_box
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0000620	"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence AGGTTCCAnnCC." [SO:ke]	2928210	\N	SOFA	sequence	4	SO	promoter	B_box
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0000620	"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence AGGTTCCAnnCC." [SO:ke]	2928211	\N	SOFA	sequence	4	SO	nucleotide_motif	B_box
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0000620	"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence AGGTTCCAnnCC." [SO:ke]	4001563	SOFA	SOFA	sequence	5	SO	transcriptional_cis_regulatory_region	B_box
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0000620	"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence AGGTTCCAnnCC." [SO:ke]	4001564	SOFA	SOFA	sequence	5	SO	sequence_motif	B_box
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000620	"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence AGGTTCCAnnCC." [SO:ke]	4966090	SOFA	SOFA	sequence	6	SO	transcription_regulatory_region	B_box
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000620	"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence AGGTTCCAnnCC." [SO:ke]	4966091	SOFA	SOFA	sequence	6	SO	biological_region	B_box
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000620	"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence AGGTTCCAnnCC." [SO:ke]	5741008	SOFA	SOFA	sequence	7	SO	regulatory_region	B_box
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000620	"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence AGGTTCCAnnCC." [SO:ke]	6948074	SOFA	SOFA	sequence	10	SO	region	B_box
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0000620	"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence AGGTTCCAnnCC." [SO:ke]	6310943	SOFA	SOFA	sequence	8	SO	gene_member_region	B_box
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000620	"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence AGGTTCCAnnCC." [SO:ke]	7068344	SOFA	SOFA	sequence	11	SO	sequence_feature	B_box
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000620	"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence AGGTTCCAnnCC." [SO:ke]	6699309	SOFA	SOFA	sequence	9	SO	biological_region	B_box
SO:0000621	\N	\N	"" []	SO:0000621	"" []	45561	\N	\N	sequence	0	SO	RNApol_III_promoter_type_3	RNApol_III_promoter_type_3
SO:0000171	SO:0000621	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase III binds, to begin transcription." [SO:ke]	SO:0000621	"" []	490213	\N	\N	sequence	1	SO	RNApol_III_promoter	RNApol_III_promoter_type_3
SO:0001203	SO:0000171	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0000621	"" []	1072691	\N	\N	sequence	2	SO	RNA_polymerase_promoter	RNApol_III_promoter_type_3
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0000621	"" []	1903741	\N	SOFA	sequence	3	SO	promoter	RNApol_III_promoter_type_3
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0000621	"" []	2928212	SOFA	SOFA	sequence	4	SO	transcriptional_cis_regulatory_region	RNApol_III_promoter_type_3
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000621	"" []	4001565	SOFA	SOFA	sequence	5	SO	transcription_regulatory_region	RNApol_III_promoter_type_3
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000621	"" []	4966092	SOFA	SOFA	sequence	6	SO	regulatory_region	RNApol_III_promoter_type_3
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0000621	"" []	5741010	SOFA	SOFA	sequence	7	SO	gene_member_region	RNApol_III_promoter_type_3
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000621	"" []	6310945	SOFA	SOFA	sequence	8	SO	biological_region	RNApol_III_promoter_type_3
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000621	"" []	6699310	SOFA	SOFA	sequence	9	SO	region	RNApol_III_promoter_type_3
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000621	"" []	6948075	SOFA	SOFA	sequence	10	SO	sequence_feature	RNApol_III_promoter_type_3
SO:0000622	\N	\N	"An RNA polymerase III type 1 promoter with consensus sequence CAnnCCn." [SO:ke]	SO:0000622	"An RNA polymerase III type 1 promoter with consensus sequence CAnnCCn." [SO:ke]	45562	\N	\N	sequence	0	SO	C_box	C_box
SO:0000617	SO:0000622	\N	"" []	SO:0000622	"An RNA polymerase III type 1 promoter with consensus sequence CAnnCCn." [SO:ke]	490214	\N	\N	sequence	1	SO	RNApol_III_promoter_type_1	C_box
SO:0001660	SO:0000622	\N	"" []	SO:0000622	"An RNA polymerase III type 1 promoter with consensus sequence CAnnCCn." [SO:ke]	490215	\N	\N	sequence	1	SO	core_promoter_element	C_box
SO:0000171	SO:0000617	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase III binds, to begin transcription." [SO:ke]	SO:0000622	"An RNA polymerase III type 1 promoter with consensus sequence CAnnCCn." [SO:ke]	1072692	\N	\N	sequence	2	SO	RNApol_III_promoter	C_box
SO:0001659	SO:0001660	\N	"" []	SO:0000622	"An RNA polymerase III type 1 promoter with consensus sequence CAnnCCn." [SO:ke]	1072693	\N	\N	sequence	2	SO	promoter_element	C_box
SO:0001203	SO:0000171	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0000622	"An RNA polymerase III type 1 promoter with consensus sequence CAnnCCn." [SO:ke]	1903742	\N	\N	sequence	3	SO	RNA_polymerase_promoter	C_box
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0000622	"An RNA polymerase III type 1 promoter with consensus sequence CAnnCCn." [SO:ke]	1903743	\N	\N	sequence	3	SO	DNA_motif	C_box
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0000622	"An RNA polymerase III type 1 promoter with consensus sequence CAnnCCn." [SO:ke]	2928213	\N	SOFA	sequence	4	SO	promoter	C_box
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0000622	"An RNA polymerase III type 1 promoter with consensus sequence CAnnCCn." [SO:ke]	2928214	\N	SOFA	sequence	4	SO	nucleotide_motif	C_box
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0000622	"An RNA polymerase III type 1 promoter with consensus sequence CAnnCCn." [SO:ke]	4001566	SOFA	SOFA	sequence	5	SO	transcriptional_cis_regulatory_region	C_box
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0000622	"An RNA polymerase III type 1 promoter with consensus sequence CAnnCCn." [SO:ke]	4001567	SOFA	SOFA	sequence	5	SO	sequence_motif	C_box
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000622	"An RNA polymerase III type 1 promoter with consensus sequence CAnnCCn." [SO:ke]	4966093	SOFA	SOFA	sequence	6	SO	transcription_regulatory_region	C_box
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000622	"An RNA polymerase III type 1 promoter with consensus sequence CAnnCCn." [SO:ke]	4966094	SOFA	SOFA	sequence	6	SO	biological_region	C_box
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000622	"An RNA polymerase III type 1 promoter with consensus sequence CAnnCCn." [SO:ke]	5741011	SOFA	SOFA	sequence	7	SO	regulatory_region	C_box
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000622	"An RNA polymerase III type 1 promoter with consensus sequence CAnnCCn." [SO:ke]	6948076	SOFA	SOFA	sequence	10	SO	region	C_box
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0000622	"An RNA polymerase III type 1 promoter with consensus sequence CAnnCCn." [SO:ke]	6310946	SOFA	SOFA	sequence	8	SO	gene_member_region	C_box
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000622	"An RNA polymerase III type 1 promoter with consensus sequence CAnnCCn." [SO:ke]	7068345	SOFA	SOFA	sequence	11	SO	sequence_feature	C_box
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000622	"An RNA polymerase III type 1 promoter with consensus sequence CAnnCCn." [SO:ke]	6699311	SOFA	SOFA	sequence	9	SO	biological_region	C_box
SO:0000623	\N	\N	"" []	SO:0000623	"" []	45563	\N	\N	sequence	0	SO	snRNA_encoding	snRNA_encoding
SO:0000011	SO:0000623	\N	"" []	SO:0000623	"" []	490216	\N	\N	sequence	1	SO	non_protein_coding	snRNA_encoding
SO:0000401	SO:0000011	\N	"" []	SO:0000623	"" []	1072694	\N	\N	sequence	2	SO	gene_attribute	snRNA_encoding
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000623	"" []	1903744	\N	\N	sequence	3	SO	feature_attribute	snRNA_encoding
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000623	"" []	2928215	\N	\N	sequence	4	SO	sequence_attribute	snRNA_encoding
SO:0000624	\N	SOFA	"A specific structure at the end of a linear chromosome, required for the integrity and maintenance of the end." [SO:ma]	SO:0000624	"A specific structure at the end of a linear chromosome, required for the integrity and maintenance of the end." [SO:ma]	45564	\N	SOFA	sequence	0	SO	telomere	telomere
SO:0000628	SO:0000624	SOFA	"" []	SO:0000624	"A specific structure at the end of a linear chromosome, required for the integrity and maintenance of the end." [SO:ma]	490217	SOFA	SOFA	sequence	1	SO	chromosomal_structural_element	telomere
SO:0000830	SO:0000628	SOFA	"A region of a chromosome." [SO:ke]	SO:0000624	"A specific structure at the end of a linear chromosome, required for the integrity and maintenance of the end." [SO:ma]	1072695	SOFA	SOFA	sequence	2	SO	chromosome_part	telomere
SO:0000340	SO:0000830	SOFA	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000624	"A specific structure at the end of a linear chromosome, required for the integrity and maintenance of the end." [SO:ma]	1903745	SOFA	SOFA	sequence	3	SO	chromosome	telomere
SO:0001411	SO:0000830	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000624	"A specific structure at the end of a linear chromosome, required for the integrity and maintenance of the end." [SO:ma]	1903746	SOFA	SOFA	sequence	3	SO	biological_region	telomere
SO:0001235	SO:0000340	SOFA	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000624	"A specific structure at the end of a linear chromosome, required for the integrity and maintenance of the end." [SO:ma]	2928216	SOFA	SOFA	sequence	4	SO	replicon	telomere
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000624	"A specific structure at the end of a linear chromosome, required for the integrity and maintenance of the end." [SO:ma]	4966095	SOFA	SOFA	sequence	6	SO	region	telomere
SO:0001411	SO:0001235	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000624	"A specific structure at the end of a linear chromosome, required for the integrity and maintenance of the end." [SO:ma]	4001568	SOFA	SOFA	sequence	5	SO	biological_region	telomere
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000624	"A specific structure at the end of a linear chromosome, required for the integrity and maintenance of the end." [SO:ma]	5180698	SOFA	SOFA	sequence	7	SO	sequence_feature	telomere
SO:0000625	\N	SOFA	"A regulatory region which upon binding of transcription factors, suppress the transcription of the gene or genes they control." [SO:ke]	SO:0000625	"A regulatory region which upon binding of transcription factors, suppress the transcription of the gene or genes they control." [SO:ke]	45565	\N	SOFA	sequence	0	SO	silencer	silencer
SO:0000727	SO:0000625	SOFA	"A regulatory region where transcription factor binding sites clustered to regulate various aspects of transcription activities. (CRMs can be located a few kb to hundred kb upstream of the basal promoter, in the coding sequence, within introns, or in the downstream 3'UTR sequences, as well as on different chromosome). A single gene can be regulated by multiple CRMs to give precise control of its spatial and temporal expression. CRMs function as nodes in large, intertwined regulatory network." [PMID:19660565, SO:SG]	SO:0000625	"A regulatory region which upon binding of transcription factors, suppress the transcription of the gene or genes they control." [SO:ke]	490218	SOFA	SOFA	sequence	1	SO	CRM	silencer
SO:0001055	SO:0000727	SOFA	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0000625	"A regulatory region which upon binding of transcription factors, suppress the transcription of the gene or genes they control." [SO:ke]	1072696	SOFA	SOFA	sequence	2	SO	transcriptional_cis_regulatory_region	silencer
SO:0001679	SO:0001055	SOFA	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000625	"A regulatory region which upon binding of transcription factors, suppress the transcription of the gene or genes they control." [SO:ke]	1903747	SOFA	SOFA	sequence	3	SO	transcription_regulatory_region	silencer
SO:0005836	SO:0001679	SOFA	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000625	"A regulatory region which upon binding of transcription factors, suppress the transcription of the gene or genes they control." [SO:ke]	2928218	SOFA	SOFA	sequence	4	SO	regulatory_region	silencer
SO:0000831	SO:0005836	SOFA	"A region of a gene." [SO:ke]	SO:0000625	"A regulatory region which upon binding of transcription factors, suppress the transcription of the gene or genes they control." [SO:ke]	4001570	SOFA	SOFA	sequence	5	SO	gene_member_region	silencer
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000625	"A regulatory region which upon binding of transcription factors, suppress the transcription of the gene or genes they control." [SO:ke]	4966096	SOFA	SOFA	sequence	6	SO	biological_region	silencer
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000625	"A regulatory region which upon binding of transcription factors, suppress the transcription of the gene or genes they control." [SO:ke]	5741013	SOFA	SOFA	sequence	7	SO	region	silencer
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000625	"A regulatory region which upon binding of transcription factors, suppress the transcription of the gene or genes they control." [SO:ke]	6310948	SOFA	SOFA	sequence	8	SO	sequence_feature	silencer
SO:0000626	\N	\N	"" []	SO:0000626	"" []	45566	\N	\N	sequence	0	SO	chromosomal_regulatory_element	chromosomal_regulatory_element
SO:0000830	SO:0000626	\N	"A region of a chromosome." [SO:ke]	SO:0000626	"" []	490219	\N	SOFA	sequence	1	SO	chromosome_part	chromosomal_regulatory_element
SO:0000340	SO:0000830	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000626	"" []	1072697	SOFA	SOFA	sequence	2	SO	chromosome	chromosomal_regulatory_element
SO:0001411	SO:0000830	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000626	"" []	1072698	SOFA	SOFA	sequence	2	SO	biological_region	chromosomal_regulatory_element
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000626	"" []	1903748	SOFA	SOFA	sequence	3	SO	replicon	chromosomal_regulatory_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000626	"" []	4001571	SOFA	SOFA	sequence	5	SO	region	chromosomal_regulatory_element
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000626	"" []	2928219	SOFA	SOFA	sequence	4	SO	biological_region	chromosomal_regulatory_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000626	"" []	4132306	SOFA	SOFA	sequence	6	SO	sequence_feature	chromosomal_regulatory_element
SO:0000627	\N	SOFA	"A transcriptional cis regulatory region that when located between a CM and a gene's promoter prevents the CRM from modulating that genes expression." [SO:regcreative]	SO:0000627	"A transcriptional cis regulatory region that when located between a CM and a gene's promoter prevents the CRM from modulating that genes expression." [SO:regcreative]	45567	\N	SOFA	sequence	0	SO	insulator	insulator
SO:0001055	SO:0000627	SOFA	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0000627	"A transcriptional cis regulatory region that when located between a CM and a gene's promoter prevents the CRM from modulating that genes expression." [SO:regcreative]	490220	SOFA	SOFA	sequence	1	SO	transcriptional_cis_regulatory_region	insulator
SO:0001679	SO:0001055	SOFA	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000627	"A transcriptional cis regulatory region that when located between a CM and a gene's promoter prevents the CRM from modulating that genes expression." [SO:regcreative]	1072699	SOFA	SOFA	sequence	2	SO	transcription_regulatory_region	insulator
SO:0005836	SO:0001679	SOFA	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000627	"A transcriptional cis regulatory region that when located between a CM and a gene's promoter prevents the CRM from modulating that genes expression." [SO:regcreative]	1903750	SOFA	SOFA	sequence	3	SO	regulatory_region	insulator
SO:0000831	SO:0005836	SOFA	"A region of a gene." [SO:ke]	SO:0000627	"A transcriptional cis regulatory region that when located between a CM and a gene's promoter prevents the CRM from modulating that genes expression." [SO:regcreative]	2928221	SOFA	SOFA	sequence	4	SO	gene_member_region	insulator
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000627	"A transcriptional cis regulatory region that when located between a CM and a gene's promoter prevents the CRM from modulating that genes expression." [SO:regcreative]	4001572	SOFA	SOFA	sequence	5	SO	biological_region	insulator
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000627	"A transcriptional cis regulatory region that when located between a CM and a gene's promoter prevents the CRM from modulating that genes expression." [SO:regcreative]	4966097	SOFA	SOFA	sequence	6	SO	region	insulator
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000627	"A transcriptional cis regulatory region that when located between a CM and a gene's promoter prevents the CRM from modulating that genes expression." [SO:regcreative]	5741014	SOFA	SOFA	sequence	7	SO	sequence_feature	insulator
SO:0000628	\N	SOFA	"" []	SO:0000628	"" []	45568	\N	SOFA	sequence	0	SO	chromosomal_structural_element	chromosomal_structural_element
SO:0000830	SO:0000628	SOFA	"A region of a chromosome." [SO:ke]	SO:0000628	"" []	490221	SOFA	SOFA	sequence	1	SO	chromosome_part	chromosomal_structural_element
SO:0000340	SO:0000830	SOFA	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000628	"" []	1072700	SOFA	SOFA	sequence	2	SO	chromosome	chromosomal_structural_element
SO:0001411	SO:0000830	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000628	"" []	1072701	SOFA	SOFA	sequence	2	SO	biological_region	chromosomal_structural_element
SO:0001235	SO:0000340	SOFA	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000628	"" []	1903751	SOFA	SOFA	sequence	3	SO	replicon	chromosomal_structural_element
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000628	"" []	4001573	SOFA	SOFA	sequence	5	SO	region	chromosomal_structural_element
SO:0001411	SO:0001235	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000628	"" []	2928222	SOFA	SOFA	sequence	4	SO	biological_region	chromosomal_structural_element
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000628	"" []	4132307	SOFA	SOFA	sequence	6	SO	sequence_feature	chromosomal_structural_element
SO:0000629	\N	\N	"" []	SO:0000629	"" []	45569	\N	\N	sequence	0	SO	five_prime_open_reading_frame	five_prime_open_reading_frame
SO:0000204	SO:0000629	\N	"A region at the 5' end of a mature transcript (preceding the initiation codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000629	"" []	490222	\N	SOFA	sequence	1	SO	five_prime_UTR	five_prime_open_reading_frame
SO:0000836	SO:0000629	\N	"A region of an mRNA." [SO:cb]	SO:0000629	"" []	490223	\N	SOFA	sequence	1	SO	mRNA_region	five_prime_open_reading_frame
SO:0000203	SO:0000204	\N	"Messenger RNA sequences that are untranslated and lie five prime or three prime to sequences which are translated." [SO:ke]	SO:0000629	"" []	1072702	SOFA	SOFA	sequence	2	SO	UTR	five_prime_open_reading_frame
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000629	"" []	2928224	SOFA	SOFA	sequence	4	SO	mRNA	five_prime_open_reading_frame
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:0000629	"" []	2928225	SOFA	SOFA	sequence	4	SO	mature_transcript_region	five_prime_open_reading_frame
SO:0000836	SO:0000203	\N	"A region of an mRNA." [SO:cb]	SO:0000629	"" []	1903753	SOFA	SOFA	sequence	3	SO	mRNA_region	five_prime_open_reading_frame
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000629	"" []	2999118	SOFA	SOFA	sequence	5	SO	mature_transcript	five_prime_open_reading_frame
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0000629	"" []	2999119	SOFA	SOFA	sequence	5	SO	transcript_region	five_prime_open_reading_frame
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000629	"" []	4132308	SOFA	SOFA	sequence	6	SO	transcript	five_prime_open_reading_frame
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000629	"" []	4132309	SOFA	SOFA	sequence	6	SO	transcript	five_prime_open_reading_frame
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000629	"" []	4132310	SOFA	SOFA	sequence	6	SO	biological_region	five_prime_open_reading_frame
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000629	"" []	5180699	SOFA	SOFA	sequence	7	SO	gene_member_region	five_prime_open_reading_frame
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000629	"" []	6550261	SOFA	SOFA	sequence	9	SO	region	five_prime_open_reading_frame
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000629	"" []	5996397	SOFA	SOFA	sequence	8	SO	biological_region	five_prime_open_reading_frame
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000629	"" []	6807576	SOFA	SOFA	sequence	10	SO	sequence_feature	five_prime_open_reading_frame
SO:0000630	\N	\N	"A start codon upstream of the ORF." [SO:ke]	SO:0000630	"A start codon upstream of the ORF." [SO:ke]	45570	\N	\N	sequence	0	SO	upstream_AUG_codon	upstream_AUG_codon
SO:0000203	SO:0000630	\N	"Messenger RNA sequences that are untranslated and lie five prime or three prime to sequences which are translated." [SO:ke]	SO:0000630	"A start codon upstream of the ORF." [SO:ke]	490224	\N	SOFA	sequence	1	SO	UTR	upstream_AUG_codon
SO:0000837	SO:0000630	\N	"A region of UTR." [SO:ke]	SO:0000630	"A start codon upstream of the ORF." [SO:ke]	490225	\N	SOFA	sequence	1	SO	UTR_region	upstream_AUG_codon
SO:0000836	SO:0000203	\N	"A region of an mRNA." [SO:cb]	SO:0000630	"A start codon upstream of the ORF." [SO:ke]	1072705	SOFA	SOFA	sequence	2	SO	mRNA_region	upstream_AUG_codon
SO:0000836	SO:0000837	\N	"A region of an mRNA." [SO:cb]	SO:0000630	"A start codon upstream of the ORF." [SO:ke]	1072706	SOFA	SOFA	sequence	2	SO	mRNA_region	upstream_AUG_codon
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000630	"A start codon upstream of the ORF." [SO:ke]	1903756	SOFA	SOFA	sequence	3	SO	mRNA	upstream_AUG_codon
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:0000630	"A start codon upstream of the ORF." [SO:ke]	1903757	SOFA	SOFA	sequence	3	SO	mature_transcript_region	upstream_AUG_codon
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000630	"A start codon upstream of the ORF." [SO:ke]	2928229	SOFA	SOFA	sequence	4	SO	mature_transcript	upstream_AUG_codon
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0000630	"A start codon upstream of the ORF." [SO:ke]	2928230	SOFA	SOFA	sequence	4	SO	transcript_region	upstream_AUG_codon
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000630	"A start codon upstream of the ORF." [SO:ke]	4001576	SOFA	SOFA	sequence	5	SO	transcript	upstream_AUG_codon
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000630	"A start codon upstream of the ORF." [SO:ke]	4001577	SOFA	SOFA	sequence	5	SO	transcript	upstream_AUG_codon
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000630	"A start codon upstream of the ORF." [SO:ke]	4001578	SOFA	SOFA	sequence	5	SO	biological_region	upstream_AUG_codon
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000630	"A start codon upstream of the ORF." [SO:ke]	4966100	SOFA	SOFA	sequence	6	SO	gene_member_region	upstream_AUG_codon
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000630	"A start codon upstream of the ORF." [SO:ke]	6310949	SOFA	SOFA	sequence	8	SO	region	upstream_AUG_codon
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000630	"A start codon upstream of the ORF." [SO:ke]	5741015	SOFA	SOFA	sequence	7	SO	biological_region	upstream_AUG_codon
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000630	"A start codon upstream of the ORF." [SO:ke]	6550262	SOFA	SOFA	sequence	9	SO	sequence_feature	upstream_AUG_codon
SO:0000631	\N	\N	"A primary transcript encoding for more than one gene product." [SO:ke]	SO:0000631	"A primary transcript encoding for more than one gene product." [SO:ke]	45571	\N	\N	sequence	0	SO	polycistronic_primary_transcript	polycistronic_primary_transcript
SO:0000078	SO:0000631	\N	"A transcript that is polycistronic." [SO:xp]	SO:0000631	"A primary transcript encoding for more than one gene product." [SO:ke]	490226	\N	\N	sequence	1	SO	polycistronic_transcript	polycistronic_primary_transcript
SO:0000185	SO:0000631	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000631	"A primary transcript encoding for more than one gene product." [SO:ke]	490227	\N	SOFA	sequence	1	SO	primary_transcript	polycistronic_primary_transcript
SO:0000673	SO:0000078	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000631	"A primary transcript encoding for more than one gene product." [SO:ke]	1072707	\N	SOFA	sequence	2	SO	transcript	polycistronic_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000631	"A primary transcript encoding for more than one gene product." [SO:ke]	1072708	SOFA	SOFA	sequence	2	SO	transcript	polycistronic_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000631	"A primary transcript encoding for more than one gene product." [SO:ke]	1903758	SOFA	SOFA	sequence	3	SO	gene_member_region	polycistronic_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000631	"A primary transcript encoding for more than one gene product." [SO:ke]	2928231	SOFA	SOFA	sequence	4	SO	biological_region	polycistronic_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000631	"A primary transcript encoding for more than one gene product." [SO:ke]	4001579	SOFA	SOFA	sequence	5	SO	region	polycistronic_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000631	"A primary transcript encoding for more than one gene product." [SO:ke]	4966102	SOFA	SOFA	sequence	6	SO	sequence_feature	polycistronic_primary_transcript
SO:0000632	\N	\N	"A primary transcript encoding for one gene product." [SO:ke]	SO:0000632	"A primary transcript encoding for one gene product." [SO:ke]	45572	\N	\N	sequence	0	SO	monocistronic_primary_transcript	monocistronic_primary_transcript
SO:0000185	SO:0000632	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000632	"A primary transcript encoding for one gene product." [SO:ke]	490228	\N	SOFA	sequence	1	SO	primary_transcript	monocistronic_primary_transcript
SO:0000665	SO:0000632	\N	"A transcript that is monocistronic." [SO:xp]	SO:0000632	"A primary transcript encoding for one gene product." [SO:ke]	490229	\N	\N	sequence	1	SO	monocistronic_transcript	monocistronic_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000632	"A primary transcript encoding for one gene product." [SO:ke]	1072709	SOFA	SOFA	sequence	2	SO	transcript	monocistronic_primary_transcript
SO:0000673	SO:0000665	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000632	"A primary transcript encoding for one gene product." [SO:ke]	1072710	\N	SOFA	sequence	2	SO	transcript	monocistronic_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000632	"A primary transcript encoding for one gene product." [SO:ke]	1903759	SOFA	SOFA	sequence	3	SO	gene_member_region	monocistronic_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000632	"A primary transcript encoding for one gene product." [SO:ke]	2928232	SOFA	SOFA	sequence	4	SO	biological_region	monocistronic_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000632	"A primary transcript encoding for one gene product." [SO:ke]	4001580	SOFA	SOFA	sequence	5	SO	region	monocistronic_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000632	"A primary transcript encoding for one gene product." [SO:ke]	4966103	SOFA	SOFA	sequence	6	SO	sequence_feature	monocistronic_primary_transcript
SO:0000633	\N	\N	"An mRNA with either a single protein product, or for which the regions encoding all its protein products overlap." [SO:rd]	SO:0000633	"An mRNA with either a single protein product, or for which the regions encoding all its protein products overlap." [SO:rd]	45573	\N	\N	sequence	0	SO	monocistronic_mRNA	monocistronic_mRNA
SO:0000234	SO:0000633	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000633	"An mRNA with either a single protein product, or for which the regions encoding all its protein products overlap." [SO:rd]	490230	\N	SOFA	sequence	1	SO	mRNA	monocistronic_mRNA
SO:0000665	SO:0000633	\N	"A transcript that is monocistronic." [SO:xp]	SO:0000633	"An mRNA with either a single protein product, or for which the regions encoding all its protein products overlap." [SO:rd]	490231	\N	\N	sequence	1	SO	monocistronic_transcript	monocistronic_mRNA
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000633	"An mRNA with either a single protein product, or for which the regions encoding all its protein products overlap." [SO:rd]	1072711	SOFA	SOFA	sequence	2	SO	mature_transcript	monocistronic_mRNA
SO:0000673	SO:0000665	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000633	"An mRNA with either a single protein product, or for which the regions encoding all its protein products overlap." [SO:rd]	1072712	\N	SOFA	sequence	2	SO	transcript	monocistronic_mRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000633	"An mRNA with either a single protein product, or for which the regions encoding all its protein products overlap." [SO:rd]	1903760	SOFA	SOFA	sequence	3	SO	transcript	monocistronic_mRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000633	"An mRNA with either a single protein product, or for which the regions encoding all its protein products overlap." [SO:rd]	2928233	SOFA	SOFA	sequence	4	SO	gene_member_region	monocistronic_mRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000633	"An mRNA with either a single protein product, or for which the regions encoding all its protein products overlap." [SO:rd]	3173886	SOFA	SOFA	sequence	5	SO	biological_region	monocistronic_mRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000633	"An mRNA with either a single protein product, or for which the regions encoding all its protein products overlap." [SO:rd]	4385742	SOFA	SOFA	sequence	6	SO	region	monocistronic_mRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000633	"An mRNA with either a single protein product, or for which the regions encoding all its protein products overlap." [SO:rd]	5407405	SOFA	SOFA	sequence	7	SO	sequence_feature	monocistronic_mRNA
SO:0000634	\N	\N	"An mRNA that encodes multiple proteins from at least two non-overlapping regions." [SO:rd]	SO:0000634	"An mRNA that encodes multiple proteins from at least two non-overlapping regions." [SO:rd]	45574	\N	\N	sequence	0	SO	polycistronic_mRNA	polycistronic_mRNA
SO:0000078	SO:0000634	\N	"A transcript that is polycistronic." [SO:xp]	SO:0000634	"An mRNA that encodes multiple proteins from at least two non-overlapping regions." [SO:rd]	490232	\N	\N	sequence	1	SO	polycistronic_transcript	polycistronic_mRNA
SO:0000234	SO:0000634	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000634	"An mRNA that encodes multiple proteins from at least two non-overlapping regions." [SO:rd]	490233	\N	SOFA	sequence	1	SO	mRNA	polycistronic_mRNA
SO:0000673	SO:0000078	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000634	"An mRNA that encodes multiple proteins from at least two non-overlapping regions." [SO:rd]	1072713	\N	SOFA	sequence	2	SO	transcript	polycistronic_mRNA
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000634	"An mRNA that encodes multiple proteins from at least two non-overlapping regions." [SO:rd]	1072714	SOFA	SOFA	sequence	2	SO	mature_transcript	polycistronic_mRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000634	"An mRNA that encodes multiple proteins from at least two non-overlapping regions." [SO:rd]	2928236	SOFA	SOFA	sequence	4	SO	gene_member_region	polycistronic_mRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000634	"An mRNA that encodes multiple proteins from at least two non-overlapping regions." [SO:rd]	1903763	SOFA	SOFA	sequence	3	SO	transcript	polycistronic_mRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000634	"An mRNA that encodes multiple proteins from at least two non-overlapping regions." [SO:rd]	3173887	SOFA	SOFA	sequence	5	SO	biological_region	polycistronic_mRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000634	"An mRNA that encodes multiple proteins from at least two non-overlapping regions." [SO:rd]	4385743	SOFA	SOFA	sequence	6	SO	region	polycistronic_mRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000634	"An mRNA that encodes multiple proteins from at least two non-overlapping regions." [SO:rd]	5407406	SOFA	SOFA	sequence	7	SO	sequence_feature	polycistronic_mRNA
SO:0000635	\N	\N	"A primary transcript that donates the spliced leader to other mRNA." [SO:ke]	SO:0000635	"A primary transcript that donates the spliced leader to other mRNA." [SO:ke]	45575	\N	\N	sequence	0	SO	mini_exon_donor_RNA	mini_exon_donor_RNA
SO:0000185	SO:0000635	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000635	"A primary transcript that donates the spliced leader to other mRNA." [SO:ke]	490234	\N	SOFA	sequence	1	SO	primary_transcript	mini_exon_donor_RNA
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000635	"A primary transcript that donates the spliced leader to other mRNA." [SO:ke]	1072715	SOFA	SOFA	sequence	2	SO	transcript	mini_exon_donor_RNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000635	"A primary transcript that donates the spliced leader to other mRNA." [SO:ke]	1903764	SOFA	SOFA	sequence	3	SO	gene_member_region	mini_exon_donor_RNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000635	"A primary transcript that donates the spliced leader to other mRNA." [SO:ke]	2928237	SOFA	SOFA	sequence	4	SO	biological_region	mini_exon_donor_RNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000635	"A primary transcript that donates the spliced leader to other mRNA." [SO:ke]	4001583	SOFA	SOFA	sequence	5	SO	region	mini_exon_donor_RNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000635	"A primary transcript that donates the spliced leader to other mRNA." [SO:ke]	4966106	SOFA	SOFA	sequence	6	SO	sequence_feature	mini_exon_donor_RNA
SO:0000636	\N	\N	"" []	SO:0000636	"" []	45576	\N	\N	sequence	0	SO	spliced_leader_RNA	spliced_leader_RNA
SO:0000635	SO:0000636	\N	"A primary transcript that donates the spliced leader to other mRNA." [SO:ke]	SO:0000636	"" []	490235	\N	\N	sequence	1	SO	mini_exon_donor_RNA	spliced_leader_RNA
SO:0000835	SO:0000636	\N	"A part of a primary transcript." [SO:ke]	SO:0000636	"" []	490236	\N	SOFA	sequence	1	SO	primary_transcript_region	spliced_leader_RNA
SO:0000185	SO:0000635	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000636	"" []	1072716	\N	SOFA	sequence	2	SO	primary_transcript	spliced_leader_RNA
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000636	"" []	1072717	SOFA	SOFA	sequence	2	SO	primary_transcript	spliced_leader_RNA
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0000636	"" []	1072718	SOFA	SOFA	sequence	2	SO	transcript_region	spliced_leader_RNA
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000636	"" []	1903765	SOFA	SOFA	sequence	3	SO	transcript	spliced_leader_RNA
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000636	"" []	1903766	SOFA	SOFA	sequence	3	SO	transcript	spliced_leader_RNA
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000636	"" []	1903767	SOFA	SOFA	sequence	3	SO	biological_region	spliced_leader_RNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000636	"" []	2928238	SOFA	SOFA	sequence	4	SO	gene_member_region	spliced_leader_RNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000636	"" []	4966107	SOFA	SOFA	sequence	6	SO	region	spliced_leader_RNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000636	"" []	4001584	SOFA	SOFA	sequence	5	SO	biological_region	spliced_leader_RNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000636	"" []	5180701	SOFA	SOFA	sequence	7	SO	sequence_feature	spliced_leader_RNA
SO:0000637	\N	\N	"A plasmid that is engineered." [SO:xp]	SO:0000637	"A plasmid that is engineered." [SO:xp]	45577	\N	\N	sequence	0	SO	engineered_plasmid	engineered_plasmid
SO:0000155	SO:0000637	\N	"A self replicating, using the hosts cellular machinery, often circular nucleic acid molecule that is distinct from a chromosome in the organism." [SO:ma]	SO:0000637	"A plasmid that is engineered." [SO:xp]	490237	\N	\N	sequence	1	SO	plasmid	engineered_plasmid
SO:0000804	SO:0000637	\N	"A region that is engineered." [SO:xp]	SO:0000637	"A plasmid that is engineered." [SO:xp]	490238	\N	\N	sequence	1	SO	engineered_region	engineered_plasmid
SO:0001235	SO:0000155	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000637	"A plasmid that is engineered." [SO:xp]	1072719	\N	SOFA	sequence	2	SO	replicon	engineered_plasmid
SO:0001409	SO:0000804	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000637	"A plasmid that is engineered." [SO:xp]	1072720	\N	SOFA	sequence	2	SO	biomaterial_region	engineered_plasmid
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000637	"A plasmid that is engineered." [SO:xp]	1903768	SOFA	SOFA	sequence	3	SO	biological_region	engineered_plasmid
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000637	"A plasmid that is engineered." [SO:xp]	1903769	SOFA	SOFA	sequence	3	SO	region	engineered_plasmid
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000637	"A plasmid that is engineered." [SO:xp]	2928240	SOFA	SOFA	sequence	4	SO	region	engineered_plasmid
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000637	"A plasmid that is engineered." [SO:xp]	4001586	SOFA	SOFA	sequence	5	SO	sequence_feature	engineered_plasmid
SO:0000638	\N	\N	"Part of an rRNA transcription unit that is transcribed but discarded during maturation, not giving rise to any part of rRNA." [http://oregonstate.edu/instruction/bb492/general/glossary.html]	SO:0000638	"Part of an rRNA transcription unit that is transcribed but discarded during maturation, not giving rise to any part of rRNA." [http://oregonstate.edu/instruction/bb492/general/glossary.html]	45578	\N	\N	sequence	0	SO	transcribed_spacer_region	transcribed_spacer_region
SO:0000838	SO:0000638	\N	"A region of an rRNA primary transcript." [SO:ke]	SO:0000638	"Part of an rRNA transcription unit that is transcribed but discarded during maturation, not giving rise to any part of rRNA." [http://oregonstate.edu/instruction/bb492/general/glossary.html]	490239	\N	\N	sequence	1	SO	rRNA_primary_transcript_region	transcribed_spacer_region
SO:0000209	SO:0000838	\N	"A primary transcript encoding a ribosomal RNA." [SO:ke]	SO:0000638	"Part of an rRNA transcription unit that is transcribed but discarded during maturation, not giving rise to any part of rRNA." [http://oregonstate.edu/instruction/bb492/general/glossary.html]	1072721	\N	SOFA	sequence	2	SO	rRNA_primary_transcript	transcribed_spacer_region
SO:0000835	SO:0000838	\N	"A part of a primary transcript." [SO:ke]	SO:0000638	"Part of an rRNA transcription unit that is transcribed but discarded during maturation, not giving rise to any part of rRNA." [http://oregonstate.edu/instruction/bb492/general/glossary.html]	1072722	\N	SOFA	sequence	2	SO	primary_transcript_region	transcribed_spacer_region
SO:0000483	SO:0000209	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000638	"Part of an rRNA transcription unit that is transcribed but discarded during maturation, not giving rise to any part of rRNA." [http://oregonstate.edu/instruction/bb492/general/glossary.html]	1903770	SOFA	SOFA	sequence	3	SO	nc_primary_transcript	transcribed_spacer_region
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000638	"Part of an rRNA transcription unit that is transcribed but discarded during maturation, not giving rise to any part of rRNA." [http://oregonstate.edu/instruction/bb492/general/glossary.html]	1903771	SOFA	SOFA	sequence	3	SO	primary_transcript	transcribed_spacer_region
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0000638	"Part of an rRNA transcription unit that is transcribed but discarded during maturation, not giving rise to any part of rRNA." [http://oregonstate.edu/instruction/bb492/general/glossary.html]	1903772	SOFA	SOFA	sequence	3	SO	transcript_region	transcribed_spacer_region
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000638	"Part of an rRNA transcription unit that is transcribed but discarded during maturation, not giving rise to any part of rRNA." [http://oregonstate.edu/instruction/bb492/general/glossary.html]	2928242	SOFA	SOFA	sequence	4	SO	primary_transcript	transcribed_spacer_region
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000638	"Part of an rRNA transcription unit that is transcribed but discarded during maturation, not giving rise to any part of rRNA." [http://oregonstate.edu/instruction/bb492/general/glossary.html]	4001587	SOFA	SOFA	sequence	5	SO	transcript	transcribed_spacer_region
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000638	"Part of an rRNA transcription unit that is transcribed but discarded during maturation, not giving rise to any part of rRNA." [http://oregonstate.edu/instruction/bb492/general/glossary.html]	2928244	SOFA	SOFA	sequence	4	SO	transcript	transcribed_spacer_region
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000638	"Part of an rRNA transcription unit that is transcribed but discarded during maturation, not giving rise to any part of rRNA." [http://oregonstate.edu/instruction/bb492/general/glossary.html]	2928245	SOFA	SOFA	sequence	4	SO	biological_region	transcribed_spacer_region
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000638	"Part of an rRNA transcription unit that is transcribed but discarded during maturation, not giving rise to any part of rRNA." [http://oregonstate.edu/instruction/bb492/general/glossary.html]	4385744	SOFA	SOFA	sequence	6	SO	gene_member_region	transcribed_spacer_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000638	"Part of an rRNA transcription unit that is transcribed but discarded during maturation, not giving rise to any part of rRNA." [http://oregonstate.edu/instruction/bb492/general/glossary.html]	6146629	SOFA	SOFA	sequence	8	SO	region	transcribed_spacer_region
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000638	"Part of an rRNA transcription unit that is transcribed but discarded during maturation, not giving rise to any part of rRNA." [http://oregonstate.edu/instruction/bb492/general/glossary.html]	5407407	SOFA	SOFA	sequence	7	SO	biological_region	transcribed_spacer_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000638	"Part of an rRNA transcription unit that is transcribed but discarded during maturation, not giving rise to any part of rRNA." [http://oregonstate.edu/instruction/bb492/general/glossary.html]	6469734	SOFA	SOFA	sequence	9	SO	sequence_feature	transcribed_spacer_region
SO:0000639	\N	\N	"Non-coding regions of DNA sequence that separate genes coding for the 28S, 5.8S, and 18S ribosomal RNAs." [SO:ke]	SO:0000639	"Non-coding regions of DNA sequence that separate genes coding for the 28S, 5.8S, and 18S ribosomal RNAs." [SO:ke]	45579	\N	\N	sequence	0	SO	internal_transcribed_spacer_region	internal_transcribed_spacer_region
SO:0000638	SO:0000639	\N	"Part of an rRNA transcription unit that is transcribed but discarded during maturation, not giving rise to any part of rRNA." [http://oregonstate.edu/instruction/bb492/general/glossary.html]	SO:0000639	"Non-coding regions of DNA sequence that separate genes coding for the 28S, 5.8S, and 18S ribosomal RNAs." [SO:ke]	490240	\N	\N	sequence	1	SO	transcribed_spacer_region	internal_transcribed_spacer_region
SO:0000838	SO:0000638	\N	"A region of an rRNA primary transcript." [SO:ke]	SO:0000639	"Non-coding regions of DNA sequence that separate genes coding for the 28S, 5.8S, and 18S ribosomal RNAs." [SO:ke]	1072723	\N	\N	sequence	2	SO	rRNA_primary_transcript_region	internal_transcribed_spacer_region
SO:0000209	SO:0000838	\N	"A primary transcript encoding a ribosomal RNA." [SO:ke]	SO:0000639	"Non-coding regions of DNA sequence that separate genes coding for the 28S, 5.8S, and 18S ribosomal RNAs." [SO:ke]	1903773	\N	SOFA	sequence	3	SO	rRNA_primary_transcript	internal_transcribed_spacer_region
SO:0000835	SO:0000838	\N	"A part of a primary transcript." [SO:ke]	SO:0000639	"Non-coding regions of DNA sequence that separate genes coding for the 28S, 5.8S, and 18S ribosomal RNAs." [SO:ke]	1903774	\N	SOFA	sequence	3	SO	primary_transcript_region	internal_transcribed_spacer_region
SO:0000483	SO:0000209	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000639	"Non-coding regions of DNA sequence that separate genes coding for the 28S, 5.8S, and 18S ribosomal RNAs." [SO:ke]	2928246	SOFA	SOFA	sequence	4	SO	nc_primary_transcript	internal_transcribed_spacer_region
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000639	"Non-coding regions of DNA sequence that separate genes coding for the 28S, 5.8S, and 18S ribosomal RNAs." [SO:ke]	2928247	SOFA	SOFA	sequence	4	SO	primary_transcript	internal_transcribed_spacer_region
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0000639	"Non-coding regions of DNA sequence that separate genes coding for the 28S, 5.8S, and 18S ribosomal RNAs." [SO:ke]	2928248	SOFA	SOFA	sequence	4	SO	transcript_region	internal_transcribed_spacer_region
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000639	"Non-coding regions of DNA sequence that separate genes coding for the 28S, 5.8S, and 18S ribosomal RNAs." [SO:ke]	4001590	SOFA	SOFA	sequence	5	SO	primary_transcript	internal_transcribed_spacer_region
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000639	"Non-coding regions of DNA sequence that separate genes coding for the 28S, 5.8S, and 18S ribosomal RNAs." [SO:ke]	4966110	SOFA	SOFA	sequence	6	SO	transcript	internal_transcribed_spacer_region
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000639	"Non-coding regions of DNA sequence that separate genes coding for the 28S, 5.8S, and 18S ribosomal RNAs." [SO:ke]	4001592	SOFA	SOFA	sequence	5	SO	transcript	internal_transcribed_spacer_region
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000639	"Non-coding regions of DNA sequence that separate genes coding for the 28S, 5.8S, and 18S ribosomal RNAs." [SO:ke]	4001593	SOFA	SOFA	sequence	5	SO	biological_region	internal_transcribed_spacer_region
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000639	"Non-coding regions of DNA sequence that separate genes coding for the 28S, 5.8S, and 18S ribosomal RNAs." [SO:ke]	5407408	SOFA	SOFA	sequence	7	SO	gene_member_region	internal_transcribed_spacer_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000639	"Non-coding regions of DNA sequence that separate genes coding for the 28S, 5.8S, and 18S ribosomal RNAs." [SO:ke]	6631384	SOFA	SOFA	sequence	9	SO	region	internal_transcribed_spacer_region
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000639	"Non-coding regions of DNA sequence that separate genes coding for the 28S, 5.8S, and 18S ribosomal RNAs." [SO:ke]	6146630	SOFA	SOFA	sequence	8	SO	biological_region	internal_transcribed_spacer_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000639	"Non-coding regions of DNA sequence that separate genes coding for the 28S, 5.8S, and 18S ribosomal RNAs." [SO:ke]	6848177	SOFA	SOFA	sequence	10	SO	sequence_feature	internal_transcribed_spacer_region
SO:0000640	\N	\N	"Non-coding regions of DNA that precede the sequence that codes for the ribosomal RNA." [SO:ke]	SO:0000640	"Non-coding regions of DNA that precede the sequence that codes for the ribosomal RNA." [SO:ke]	45580	\N	\N	sequence	0	SO	external_transcribed_spacer_region	external_transcribed_spacer_region
SO:0000638	SO:0000640	\N	"Part of an rRNA transcription unit that is transcribed but discarded during maturation, not giving rise to any part of rRNA." [http://oregonstate.edu/instruction/bb492/general/glossary.html]	SO:0000640	"Non-coding regions of DNA that precede the sequence that codes for the ribosomal RNA." [SO:ke]	490241	\N	\N	sequence	1	SO	transcribed_spacer_region	external_transcribed_spacer_region
SO:0000838	SO:0000638	\N	"A region of an rRNA primary transcript." [SO:ke]	SO:0000640	"Non-coding regions of DNA that precede the sequence that codes for the ribosomal RNA." [SO:ke]	1072724	\N	\N	sequence	2	SO	rRNA_primary_transcript_region	external_transcribed_spacer_region
SO:0000209	SO:0000838	\N	"A primary transcript encoding a ribosomal RNA." [SO:ke]	SO:0000640	"Non-coding regions of DNA that precede the sequence that codes for the ribosomal RNA." [SO:ke]	1903775	\N	SOFA	sequence	3	SO	rRNA_primary_transcript	external_transcribed_spacer_region
SO:0000835	SO:0000838	\N	"A part of a primary transcript." [SO:ke]	SO:0000640	"Non-coding regions of DNA that precede the sequence that codes for the ribosomal RNA." [SO:ke]	1903776	\N	SOFA	sequence	3	SO	primary_transcript_region	external_transcribed_spacer_region
SO:0000483	SO:0000209	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000640	"Non-coding regions of DNA that precede the sequence that codes for the ribosomal RNA." [SO:ke]	2928249	SOFA	SOFA	sequence	4	SO	nc_primary_transcript	external_transcribed_spacer_region
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000640	"Non-coding regions of DNA that precede the sequence that codes for the ribosomal RNA." [SO:ke]	2928250	SOFA	SOFA	sequence	4	SO	primary_transcript	external_transcribed_spacer_region
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0000640	"Non-coding regions of DNA that precede the sequence that codes for the ribosomal RNA." [SO:ke]	2928251	SOFA	SOFA	sequence	4	SO	transcript_region	external_transcribed_spacer_region
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000640	"Non-coding regions of DNA that precede the sequence that codes for the ribosomal RNA." [SO:ke]	4001594	SOFA	SOFA	sequence	5	SO	primary_transcript	external_transcribed_spacer_region
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000640	"Non-coding regions of DNA that precede the sequence that codes for the ribosomal RNA." [SO:ke]	4966113	SOFA	SOFA	sequence	6	SO	transcript	external_transcribed_spacer_region
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000640	"Non-coding regions of DNA that precede the sequence that codes for the ribosomal RNA." [SO:ke]	4001596	SOFA	SOFA	sequence	5	SO	transcript	external_transcribed_spacer_region
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000640	"Non-coding regions of DNA that precede the sequence that codes for the ribosomal RNA." [SO:ke]	4001597	SOFA	SOFA	sequence	5	SO	biological_region	external_transcribed_spacer_region
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000640	"Non-coding regions of DNA that precede the sequence that codes for the ribosomal RNA." [SO:ke]	5407409	SOFA	SOFA	sequence	7	SO	gene_member_region	external_transcribed_spacer_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000640	"Non-coding regions of DNA that precede the sequence that codes for the ribosomal RNA." [SO:ke]	6631385	SOFA	SOFA	sequence	9	SO	region	external_transcribed_spacer_region
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000640	"Non-coding regions of DNA that precede the sequence that codes for the ribosomal RNA." [SO:ke]	6146631	SOFA	SOFA	sequence	8	SO	biological_region	external_transcribed_spacer_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000640	"Non-coding regions of DNA that precede the sequence that codes for the ribosomal RNA." [SO:ke]	6848178	SOFA	SOFA	sequence	10	SO	sequence_feature	external_transcribed_spacer_region
SO:0000641	\N	\N	"" []	SO:0000641	"" []	45581	\N	\N	sequence	0	SO	tetranucleotide_repeat_microsatellite_feature	tetranucleotide_repeat_microsatellite_feature
SO:0000289	SO:0000641	\N	"A repeat_region containing repeat_units of 2 to 10 bp repeated in tandem." [http://www.informatics.jax.org/silver/glossary.shtml, NCBI:th]	SO:0000641	"" []	490242	\N	SOFA	sequence	1	SO	microsatellite	tetranucleotide_repeat_microsatellite_feature
SO:0000005	SO:0000289	\N	"The many tandem repeats (identical or related) of a short basic repeating unit; many have a base composition or other property different from the genome average that allows them to be separated from the bulk (main band) genomic DNA." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000641	"" []	1072725	SOFA	SOFA	sequence	2	SO	satellite_DNA	tetranucleotide_repeat_microsatellite_feature
SO:0000705	SO:0000005	\N	"Two or more adjacent copies of a region (of length greater than 1)." [SO:ke]	SO:0000641	"" []	1903777	SOFA	SOFA	sequence	3	SO	tandem_repeat	tetranucleotide_repeat_microsatellite_feature
SO:0000657	SO:0000705	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000641	"" []	2928252	SOFA	SOFA	sequence	4	SO	repeat_region	tetranucleotide_repeat_microsatellite_feature
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000641	"" []	4001598	SOFA	SOFA	sequence	5	SO	biological_region	tetranucleotide_repeat_microsatellite_feature
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000641	"" []	4966116	SOFA	SOFA	sequence	6	SO	region	tetranucleotide_repeat_microsatellite_feature
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000641	"" []	5741022	SOFA	SOFA	sequence	7	SO	sequence_feature	tetranucleotide_repeat_microsatellite_feature
SO:0000642	\N	\N	"" []	SO:0000642	"" []	45582	\N	\N	sequence	0	SO	SRP_RNA_encoding	SRP_RNA_encoding
SO:0000011	SO:0000642	\N	"" []	SO:0000642	"" []	490243	\N	\N	sequence	1	SO	non_protein_coding	SRP_RNA_encoding
SO:0000401	SO:0000011	\N	"" []	SO:0000642	"" []	1072726	\N	\N	sequence	2	SO	gene_attribute	SRP_RNA_encoding
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000642	"" []	1903778	\N	\N	sequence	3	SO	feature_attribute	SRP_RNA_encoding
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000642	"" []	2928253	\N	\N	sequence	4	SO	sequence_attribute	SRP_RNA_encoding
SO:0000643	\N	SOFA	"A repeat region containing tandemly repeated sequences having a unit length of 10 to 40 bp." [http://www.informatics.jax.org/silver/glossary.shtml]	SO:0000643	"A repeat region containing tandemly repeated sequences having a unit length of 10 to 40 bp." [http://www.informatics.jax.org/silver/glossary.shtml]	45583	\N	SOFA	sequence	0	SO	minisatellite	minisatellite
SO:0000005	SO:0000643	SOFA	"The many tandem repeats (identical or related) of a short basic repeating unit; many have a base composition or other property different from the genome average that allows them to be separated from the bulk (main band) genomic DNA." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000643	"A repeat region containing tandemly repeated sequences having a unit length of 10 to 40 bp." [http://www.informatics.jax.org/silver/glossary.shtml]	490244	SOFA	SOFA	sequence	1	SO	satellite_DNA	minisatellite
SO:0000705	SO:0000005	SOFA	"Two or more adjacent copies of a region (of length greater than 1)." [SO:ke]	SO:0000643	"A repeat region containing tandemly repeated sequences having a unit length of 10 to 40 bp." [http://www.informatics.jax.org/silver/glossary.shtml]	1072727	SOFA	SOFA	sequence	2	SO	tandem_repeat	minisatellite
SO:0000657	SO:0000705	SOFA	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000643	"A repeat region containing tandemly repeated sequences having a unit length of 10 to 40 bp." [http://www.informatics.jax.org/silver/glossary.shtml]	1903779	SOFA	SOFA	sequence	3	SO	repeat_region	minisatellite
SO:0001411	SO:0000657	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000643	"A repeat region containing tandemly repeated sequences having a unit length of 10 to 40 bp." [http://www.informatics.jax.org/silver/glossary.shtml]	2928254	SOFA	SOFA	sequence	4	SO	biological_region	minisatellite
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000643	"A repeat region containing tandemly repeated sequences having a unit length of 10 to 40 bp." [http://www.informatics.jax.org/silver/glossary.shtml]	4001599	SOFA	SOFA	sequence	5	SO	region	minisatellite
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000643	"A repeat region containing tandemly repeated sequences having a unit length of 10 to 40 bp." [http://www.informatics.jax.org/silver/glossary.shtml]	4966117	SOFA	SOFA	sequence	6	SO	sequence_feature	minisatellite
SO:0000644	\N	SOFA	"Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA." [SO:ke]	SO:0000644	"Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA." [SO:ke]	45584	\N	SOFA	sequence	0	SO	antisense_RNA	antisense_RNA
SO:0000655	SO:0000644	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000644	"Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA." [SO:ke]	490245	SOFA	SOFA	sequence	1	SO	ncRNA	antisense_RNA
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000644	"Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA." [SO:ke]	1072728	SOFA	SOFA	sequence	2	SO	mature_transcript	antisense_RNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000644	"Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA." [SO:ke]	1903780	SOFA	SOFA	sequence	3	SO	transcript	antisense_RNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000644	"Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA." [SO:ke]	2928255	SOFA	SOFA	sequence	4	SO	gene_member_region	antisense_RNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000644	"Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA." [SO:ke]	4001600	SOFA	SOFA	sequence	5	SO	biological_region	antisense_RNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000644	"Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA." [SO:ke]	4966118	SOFA	SOFA	sequence	6	SO	region	antisense_RNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000644	"Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA." [SO:ke]	5741023	SOFA	SOFA	sequence	7	SO	sequence_feature	antisense_RNA
SO:0000645	\N	SOFA	"The reverse complement of the primary transcript." [SO:ke]	SO:0000645	"The reverse complement of the primary transcript." [SO:ke]	45585	\N	SOFA	sequence	0	SO	antisense_primary_transcript	antisense_primary_transcript
SO:0000185	SO:0000645	SOFA	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000645	"The reverse complement of the primary transcript." [SO:ke]	490246	SOFA	SOFA	sequence	1	SO	primary_transcript	antisense_primary_transcript
SO:0000673	SO:0000185	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000645	"The reverse complement of the primary transcript." [SO:ke]	1072729	SOFA	SOFA	sequence	2	SO	transcript	antisense_primary_transcript
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000645	"The reverse complement of the primary transcript." [SO:ke]	1903781	SOFA	SOFA	sequence	3	SO	gene_member_region	antisense_primary_transcript
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000645	"The reverse complement of the primary transcript." [SO:ke]	2928256	SOFA	SOFA	sequence	4	SO	biological_region	antisense_primary_transcript
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000645	"The reverse complement of the primary transcript." [SO:ke]	4001601	SOFA	SOFA	sequence	5	SO	region	antisense_primary_transcript
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000645	"The reverse complement of the primary transcript." [SO:ke]	4966119	SOFA	SOFA	sequence	6	SO	sequence_feature	antisense_primary_transcript
SO:0000646	\N	SOFA	"A small RNA molecule that is the product of a longer exogenous or endogenous dsRNA, which is either a bimolecular duplex or very long hairpin, processed (via the Dicer pathway) such that numerous siRNAs accumulate from both strands of the dsRNA. SRNAs trigger the cleavage of their target molecules." [PMID:12592000]	SO:0000646	"A small RNA molecule that is the product of a longer exogenous or endogenous dsRNA, which is either a bimolecular duplex or very long hairpin, processed (via the Dicer pathway) such that numerous siRNAs accumulate from both strands of the dsRNA. SRNAs trigger the cleavage of their target molecules." [PMID:12592000]	45586	\N	SOFA	sequence	0	SO	siRNA	siRNA
SO:0000370	SO:0000646	SOFA	"A non-coding RNA less than 200 nucleotides long, usually with a specific secondary structure, that acts to regulate gene expression. These include short ncRNAs such as piRNA, miRNA and siRNAs (among others)." [PMID:28541282, PomBase:al, SO:ma]	SO:0000646	"A small RNA molecule that is the product of a longer exogenous or endogenous dsRNA, which is either a bimolecular duplex or very long hairpin, processed (via the Dicer pathway) such that numerous siRNAs accumulate from both strands of the dsRNA. SRNAs trigger the cleavage of their target molecules." [PMID:12592000]	490247	SOFA	SOFA	sequence	1	SO	small_regulatory_ncRNA	siRNA
SO:0000655	SO:0000370	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000646	"A small RNA molecule that is the product of a longer exogenous or endogenous dsRNA, which is either a bimolecular duplex or very long hairpin, processed (via the Dicer pathway) such that numerous siRNAs accumulate from both strands of the dsRNA. SRNAs trigger the cleavage of their target molecules." [PMID:12592000]	1072730	SOFA	SOFA	sequence	2	SO	ncRNA	siRNA
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000646	"A small RNA molecule that is the product of a longer exogenous or endogenous dsRNA, which is either a bimolecular duplex or very long hairpin, processed (via the Dicer pathway) such that numerous siRNAs accumulate from both strands of the dsRNA. SRNAs trigger the cleavage of their target molecules." [PMID:12592000]	1903782	SOFA	SOFA	sequence	3	SO	mature_transcript	siRNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000646	"A small RNA molecule that is the product of a longer exogenous or endogenous dsRNA, which is either a bimolecular duplex or very long hairpin, processed (via the Dicer pathway) such that numerous siRNAs accumulate from both strands of the dsRNA. SRNAs trigger the cleavage of their target molecules." [PMID:12592000]	2928257	SOFA	SOFA	sequence	4	SO	transcript	siRNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000646	"A small RNA molecule that is the product of a longer exogenous or endogenous dsRNA, which is either a bimolecular duplex or very long hairpin, processed (via the Dicer pathway) such that numerous siRNAs accumulate from both strands of the dsRNA. SRNAs trigger the cleavage of their target molecules." [PMID:12592000]	4001602	SOFA	SOFA	sequence	5	SO	gene_member_region	siRNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000646	"A small RNA molecule that is the product of a longer exogenous or endogenous dsRNA, which is either a bimolecular duplex or very long hairpin, processed (via the Dicer pathway) such that numerous siRNAs accumulate from both strands of the dsRNA. SRNAs trigger the cleavage of their target molecules." [PMID:12592000]	4966120	SOFA	SOFA	sequence	6	SO	biological_region	siRNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000646	"A small RNA molecule that is the product of a longer exogenous or endogenous dsRNA, which is either a bimolecular duplex or very long hairpin, processed (via the Dicer pathway) such that numerous siRNAs accumulate from both strands of the dsRNA. SRNAs trigger the cleavage of their target molecules." [PMID:12592000]	5741024	SOFA	SOFA	sequence	7	SO	region	siRNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000646	"A small RNA molecule that is the product of a longer exogenous or endogenous dsRNA, which is either a bimolecular duplex or very long hairpin, processed (via the Dicer pathway) such that numerous siRNAs accumulate from both strands of the dsRNA. SRNAs trigger the cleavage of their target molecules." [PMID:12592000]	6310952	SOFA	SOFA	sequence	8	SO	sequence_feature	siRNA
SO:0000647	\N	\N	"A primary transcript encoding a micro RNA." [SO:ke]	SO:0000647	"A primary transcript encoding a micro RNA." [SO:ke]	45587	\N	\N	sequence	0	SO	miRNA_primary_transcript	miRNA_primary_transcript
SO:0000483	SO:0000647	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000647	"A primary transcript encoding a micro RNA." [SO:ke]	490248	\N	SOFA	sequence	1	SO	nc_primary_transcript	miRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000647	"A primary transcript encoding a micro RNA." [SO:ke]	1072731	SOFA	SOFA	sequence	2	SO	primary_transcript	miRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000647	"A primary transcript encoding a micro RNA." [SO:ke]	1903783	SOFA	SOFA	sequence	3	SO	transcript	miRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000647	"A primary transcript encoding a micro RNA." [SO:ke]	2928258	SOFA	SOFA	sequence	4	SO	gene_member_region	miRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000647	"A primary transcript encoding a micro RNA." [SO:ke]	4001603	SOFA	SOFA	sequence	5	SO	biological_region	miRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000647	"A primary transcript encoding a micro RNA." [SO:ke]	4966121	SOFA	SOFA	sequence	6	SO	region	miRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000647	"A primary transcript encoding a micro RNA." [SO:ke]	5741025	SOFA	SOFA	sequence	7	SO	sequence_feature	miRNA_primary_transcript
SO:0000650	\N	SOFA	"Ribosomal RNA transcript that structures the small subunit of the ribosome." [SO:ke]	SO:0000650	"Ribosomal RNA transcript that structures the small subunit of the ribosome." [SO:ke]	45588	\N	SOFA	sequence	0	SO	small_subunit_rRNA	small_subunit_rRNA
SO:0000252	SO:0000650	SOFA	"RNA that comprises part of a ribosome, and that can provide both structural scaffolding and catalytic activity." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, ISBN:0198506732]	SO:0000650	"Ribosomal RNA transcript that structures the small subunit of the ribosome." [SO:ke]	490249	SOFA	SOFA	sequence	1	SO	rRNA	small_subunit_rRNA
SO:0000655	SO:0000252	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000650	"Ribosomal RNA transcript that structures the small subunit of the ribosome." [SO:ke]	1072732	SOFA	SOFA	sequence	2	SO	ncRNA	small_subunit_rRNA
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000650	"Ribosomal RNA transcript that structures the small subunit of the ribosome." [SO:ke]	1903784	SOFA	SOFA	sequence	3	SO	mature_transcript	small_subunit_rRNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000650	"Ribosomal RNA transcript that structures the small subunit of the ribosome." [SO:ke]	2928259	SOFA	SOFA	sequence	4	SO	transcript	small_subunit_rRNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000650	"Ribosomal RNA transcript that structures the small subunit of the ribosome." [SO:ke]	4001604	SOFA	SOFA	sequence	5	SO	gene_member_region	small_subunit_rRNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000650	"Ribosomal RNA transcript that structures the small subunit of the ribosome." [SO:ke]	4966122	SOFA	SOFA	sequence	6	SO	biological_region	small_subunit_rRNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000650	"Ribosomal RNA transcript that structures the small subunit of the ribosome." [SO:ke]	5741026	SOFA	SOFA	sequence	7	SO	region	small_subunit_rRNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000650	"Ribosomal RNA transcript that structures the small subunit of the ribosome." [SO:ke]	6310953	SOFA	SOFA	sequence	8	SO	sequence_feature	small_subunit_rRNA
SO:0000651	\N	SOFA	"Ribosomal RNA transcript that structures the large subunit of the ribosome." [SO:ke]	SO:0000651	"Ribosomal RNA transcript that structures the large subunit of the ribosome." [SO:ke]	45589	\N	SOFA	sequence	0	SO	large_subunit_rRNA	large_subunit_rRNA
SO:0000252	SO:0000651	SOFA	"RNA that comprises part of a ribosome, and that can provide both structural scaffolding and catalytic activity." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, ISBN:0198506732]	SO:0000651	"Ribosomal RNA transcript that structures the large subunit of the ribosome." [SO:ke]	490250	SOFA	SOFA	sequence	1	SO	rRNA	large_subunit_rRNA
SO:0000655	SO:0000252	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000651	"Ribosomal RNA transcript that structures the large subunit of the ribosome." [SO:ke]	1072733	SOFA	SOFA	sequence	2	SO	ncRNA	large_subunit_rRNA
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000651	"Ribosomal RNA transcript that structures the large subunit of the ribosome." [SO:ke]	1903785	SOFA	SOFA	sequence	3	SO	mature_transcript	large_subunit_rRNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000651	"Ribosomal RNA transcript that structures the large subunit of the ribosome." [SO:ke]	2928260	SOFA	SOFA	sequence	4	SO	transcript	large_subunit_rRNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000651	"Ribosomal RNA transcript that structures the large subunit of the ribosome." [SO:ke]	4001605	SOFA	SOFA	sequence	5	SO	gene_member_region	large_subunit_rRNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000651	"Ribosomal RNA transcript that structures the large subunit of the ribosome." [SO:ke]	4966123	SOFA	SOFA	sequence	6	SO	biological_region	large_subunit_rRNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000651	"Ribosomal RNA transcript that structures the large subunit of the ribosome." [SO:ke]	5741027	SOFA	SOFA	sequence	7	SO	region	large_subunit_rRNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000651	"Ribosomal RNA transcript that structures the large subunit of the ribosome." [SO:ke]	6310954	SOFA	SOFA	sequence	8	SO	sequence_feature	large_subunit_rRNA
SO:0000652	\N	SOFA	"5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilizes 5S rRNA until it is required for transcription." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00001]	SO:0000652	"5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilizes 5S rRNA until it is required for transcription." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00001]	45590	\N	SOFA	sequence	0	SO	rRNA_5S	rRNA_5S
SO:0000651	SO:0000652	SOFA	"Ribosomal RNA transcript that structures the large subunit of the ribosome." [SO:ke]	SO:0000652	"5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilizes 5S rRNA until it is required for transcription." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00001]	490251	SOFA	SOFA	sequence	1	SO	large_subunit_rRNA	rRNA_5S
SO:0000252	SO:0000651	SOFA	"RNA that comprises part of a ribosome, and that can provide both structural scaffolding and catalytic activity." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, ISBN:0198506732]	SO:0000652	"5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilizes 5S rRNA until it is required for transcription." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00001]	1072734	SOFA	SOFA	sequence	2	SO	rRNA	rRNA_5S
SO:0000655	SO:0000252	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000652	"5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilizes 5S rRNA until it is required for transcription." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00001]	1903786	SOFA	SOFA	sequence	3	SO	ncRNA	rRNA_5S
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000652	"5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilizes 5S rRNA until it is required for transcription." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00001]	2928261	SOFA	SOFA	sequence	4	SO	mature_transcript	rRNA_5S
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000652	"5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilizes 5S rRNA until it is required for transcription." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00001]	4001606	SOFA	SOFA	sequence	5	SO	transcript	rRNA_5S
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000652	"5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilizes 5S rRNA until it is required for transcription." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00001]	4966124	SOFA	SOFA	sequence	6	SO	gene_member_region	rRNA_5S
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000652	"5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilizes 5S rRNA until it is required for transcription." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00001]	5741028	SOFA	SOFA	sequence	7	SO	biological_region	rRNA_5S
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000652	"5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilizes 5S rRNA until it is required for transcription." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00001]	6310955	SOFA	SOFA	sequence	8	SO	region	rRNA_5S
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000652	"5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilizes 5S rRNA until it is required for transcription." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00001]	6699312	SOFA	SOFA	sequence	9	SO	sequence_feature	rRNA_5S
SO:0000653	\N	SOFA	"A component of the large ribosomal subunit." [SO:ke]	SO:0000653	"A component of the large ribosomal subunit." [SO:ke]	45591	\N	SOFA	sequence	0	SO	rRNA_28S	rRNA_28S
SO:0000651	SO:0000653	SOFA	"Ribosomal RNA transcript that structures the large subunit of the ribosome." [SO:ke]	SO:0000653	"A component of the large ribosomal subunit." [SO:ke]	490252	SOFA	SOFA	sequence	1	SO	large_subunit_rRNA	rRNA_28S
SO:0000252	SO:0000651	SOFA	"RNA that comprises part of a ribosome, and that can provide both structural scaffolding and catalytic activity." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, ISBN:0198506732]	SO:0000653	"A component of the large ribosomal subunit." [SO:ke]	1072735	SOFA	SOFA	sequence	2	SO	rRNA	rRNA_28S
SO:0000655	SO:0000252	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000653	"A component of the large ribosomal subunit." [SO:ke]	1903787	SOFA	SOFA	sequence	3	SO	ncRNA	rRNA_28S
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000653	"A component of the large ribosomal subunit." [SO:ke]	2928262	SOFA	SOFA	sequence	4	SO	mature_transcript	rRNA_28S
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000653	"A component of the large ribosomal subunit." [SO:ke]	4001607	SOFA	SOFA	sequence	5	SO	transcript	rRNA_28S
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000653	"A component of the large ribosomal subunit." [SO:ke]	4966125	SOFA	SOFA	sequence	6	SO	gene_member_region	rRNA_28S
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000653	"A component of the large ribosomal subunit." [SO:ke]	5741029	SOFA	SOFA	sequence	7	SO	biological_region	rRNA_28S
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000653	"A component of the large ribosomal subunit." [SO:ke]	6310956	SOFA	SOFA	sequence	8	SO	region	rRNA_28S
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000653	"A component of the large ribosomal subunit." [SO:ke]	6699313	SOFA	SOFA	sequence	9	SO	sequence_feature	rRNA_28S
SO:0000654	\N	\N	"A mitochondrial gene located in a maxicircle." [SO:xp]	SO:0000654	"A mitochondrial gene located in a maxicircle." [SO:xp]	45592	\N	\N	sequence	0	SO	maxicircle_gene	maxicircle_gene
SO:0000089	SO:0000654	\N	"A gene located in kinetoplast sequence." [SO:xp]	SO:0000654	"A mitochondrial gene located in a maxicircle." [SO:xp]	490253	\N	\N	sequence	1	SO	kinetoplast_gene	maxicircle_gene
SO:0000742	SO:0000654	\N	"A maxicircle is a replicon, part of a kinetoplast, that contains open reading frames and replicates via a rolling circle method." [PMID:8395055]	SO:0000654	"A mitochondrial gene located in a maxicircle." [SO:xp]	490254	\N	\N	sequence	1	SO	maxicircle	maxicircle_gene
SO:0000088	SO:0000089	\N	"A gene located in mitochondrial sequence." [SO:xp]	SO:0000654	"A mitochondrial gene located in a maxicircle." [SO:xp]	1072736	\N	\N	sequence	2	SO	mt_gene	maxicircle_gene
SO:0001235	SO:0000742	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000654	"A mitochondrial gene located in a maxicircle." [SO:xp]	1072737	\N	SOFA	sequence	2	SO	replicon	maxicircle_gene
SO:0000704	SO:0000088	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000654	"A mitochondrial gene located in a maxicircle." [SO:xp]	1903788	\N	SOFA	sequence	3	SO	gene	maxicircle_gene
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000654	"A mitochondrial gene located in a maxicircle." [SO:xp]	1903789	SOFA	SOFA	sequence	3	SO	biological_region	maxicircle_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000654	"A mitochondrial gene located in a maxicircle." [SO:xp]	2928263	SOFA	SOFA	sequence	4	SO	biological_region	maxicircle_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000654	"A mitochondrial gene located in a maxicircle." [SO:xp]	4001608	SOFA	SOFA	sequence	5	SO	region	maxicircle_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000654	"A mitochondrial gene located in a maxicircle." [SO:xp]	4385745	SOFA	SOFA	sequence	6	SO	sequence_feature	maxicircle_gene
SO:0000655	\N	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000655	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	45593	\N	SOFA	sequence	0	SO	ncRNA	ncRNA
CHEBI:33697	\N	SOFA	"RNA is a chemical compound which are naturally occurring polyribonucleotides." []	SO:0000655	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	193888	\N	\N	sequence	0	SO	RNA	ncRNA
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000655	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	490255	SOFA	SOFA	sequence	1	SO	mature_transcript	ncRNA
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000655	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	1072738	SOFA	SOFA	sequence	2	SO	transcript	ncRNA
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000655	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	1903790	SOFA	SOFA	sequence	3	SO	gene_member_region	ncRNA
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000655	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	2928265	SOFA	SOFA	sequence	4	SO	biological_region	ncRNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000655	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	4001610	SOFA	SOFA	sequence	5	SO	region	ncRNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000655	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	4966126	SOFA	SOFA	sequence	6	SO	sequence_feature	ncRNA
SO:0000656	\N	\N	"" []	SO:0000656	"" []	45594	\N	\N	sequence	0	SO	stRNA_encoding	stRNA_encoding
SO:0000011	SO:0000656	\N	"" []	SO:0000656	"" []	490256	\N	\N	sequence	1	SO	non_protein_coding	stRNA_encoding
SO:0000401	SO:0000011	\N	"" []	SO:0000656	"" []	1072739	\N	\N	sequence	2	SO	gene_attribute	stRNA_encoding
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000656	"" []	1903791	\N	\N	sequence	3	SO	feature_attribute	stRNA_encoding
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000656	"" []	2928266	\N	\N	sequence	4	SO	sequence_attribute	stRNA_encoding
SO:0000657	\N	SOFA	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000657	"A region of sequence containing one or more repeat units." [SO:ke]	45595	\N	SOFA	sequence	0	SO	repeat_region	repeat_region
SO:0001411	SO:0000657	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000657	"A region of sequence containing one or more repeat units." [SO:ke]	490257	SOFA	SOFA	sequence	1	SO	biological_region	repeat_region
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000657	"A region of sequence containing one or more repeat units." [SO:ke]	1072740	SOFA	SOFA	sequence	2	SO	region	repeat_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000657	"A region of sequence containing one or more repeat units." [SO:ke]	1903792	SOFA	SOFA	sequence	3	SO	sequence_feature	repeat_region
SO:0000658	\N	SOFA	"A repeat that is located at dispersed sites in the genome." [SO:ke]	SO:0000658	"A repeat that is located at dispersed sites in the genome." [SO:ke]	45596	\N	SOFA	sequence	0	SO	dispersed_repeat	dispersed_repeat
SO:0000657	SO:0000658	SOFA	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000658	"A repeat that is located at dispersed sites in the genome." [SO:ke]	490258	SOFA	SOFA	sequence	1	SO	repeat_region	dispersed_repeat
SO:0001411	SO:0000657	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000658	"A repeat that is located at dispersed sites in the genome." [SO:ke]	1072741	SOFA	SOFA	sequence	2	SO	biological_region	dispersed_repeat
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000658	"A repeat that is located at dispersed sites in the genome." [SO:ke]	1903793	SOFA	SOFA	sequence	3	SO	region	dispersed_repeat
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000658	"A repeat that is located at dispersed sites in the genome." [SO:ke]	2928267	SOFA	SOFA	sequence	4	SO	sequence_feature	dispersed_repeat
SO:0000659	\N	\N	"" []	SO:0000659	"" []	45597	\N	\N	sequence	0	SO	tmRNA_encoding	tmRNA_encoding
SO:0000011	SO:0000659	\N	"" []	SO:0000659	"" []	490259	\N	\N	sequence	1	SO	non_protein_coding	tmRNA_encoding
SO:0000401	SO:0000011	\N	"" []	SO:0000659	"" []	1072742	\N	\N	sequence	2	SO	gene_attribute	tmRNA_encoding
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000659	"" []	1903794	\N	\N	sequence	3	SO	feature_attribute	tmRNA_encoding
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000659	"" []	2928268	\N	\N	sequence	4	SO	sequence_attribute	tmRNA_encoding
SO:0000662	\N	SOFA	"An intron which is spliced by the spliceosome." [SO:ke]	SO:0000662	"An intron which is spliced by the spliceosome." [SO:ke]	45598	\N	SOFA	sequence	0	SO	spliceosomal_intron	spliceosomal_intron
SO:0000188	SO:0000662	SOFA	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000662	"An intron which is spliced by the spliceosome." [SO:ke]	490260	SOFA	SOFA	sequence	1	SO	intron	spliceosomal_intron
SO:0000835	SO:0000188	SOFA	"A part of a primary transcript." [SO:ke]	SO:0000662	"An intron which is spliced by the spliceosome." [SO:ke]	1072743	SOFA	SOFA	sequence	2	SO	primary_transcript_region	spliceosomal_intron
SO:0000185	SO:0000835	SOFA	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000662	"An intron which is spliced by the spliceosome." [SO:ke]	1903795	SOFA	SOFA	sequence	3	SO	primary_transcript	spliceosomal_intron
SO:0000833	SO:0000835	SOFA	"A region of a transcript." [SO:ke]	SO:0000662	"An intron which is spliced by the spliceosome." [SO:ke]	1903796	SOFA	SOFA	sequence	3	SO	transcript_region	spliceosomal_intron
SO:0000673	SO:0000185	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000662	"An intron which is spliced by the spliceosome." [SO:ke]	2928269	SOFA	SOFA	sequence	4	SO	transcript	spliceosomal_intron
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000662	"An intron which is spliced by the spliceosome." [SO:ke]	2928270	SOFA	SOFA	sequence	4	SO	transcript	spliceosomal_intron
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000662	"An intron which is spliced by the spliceosome." [SO:ke]	2928271	SOFA	SOFA	sequence	4	SO	biological_region	spliceosomal_intron
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000662	"An intron which is spliced by the spliceosome." [SO:ke]	4001611	SOFA	SOFA	sequence	5	SO	gene_member_region	spliceosomal_intron
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000662	"An intron which is spliced by the spliceosome." [SO:ke]	5741030	SOFA	SOFA	sequence	7	SO	region	spliceosomal_intron
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000662	"An intron which is spliced by the spliceosome." [SO:ke]	4966127	SOFA	SOFA	sequence	6	SO	biological_region	spliceosomal_intron
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000662	"An intron which is spliced by the spliceosome." [SO:ke]	5996400	SOFA	SOFA	sequence	8	SO	sequence_feature	spliceosomal_intron
SO:0000663	\N	\N	"" []	SO:0000663	"" []	45599	\N	\N	sequence	0	SO	tRNA_encoding	tRNA_encoding
SO:0000011	SO:0000663	\N	"" []	SO:0000663	"" []	490261	\N	\N	sequence	1	SO	non_protein_coding	tRNA_encoding
SO:0000401	SO:0000011	\N	"" []	SO:0000663	"" []	1072744	\N	\N	sequence	2	SO	gene_attribute	tRNA_encoding
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000663	"" []	1903797	\N	\N	sequence	3	SO	feature_attribute	tRNA_encoding
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000663	"" []	2928272	\N	\N	sequence	4	SO	sequence_attribute	tRNA_encoding
SO:0000664	\N	\N	"" []	SO:0000664	"" []	45600	\N	\N	sequence	0	SO	introgressed_chromosome_region	introgressed_chromosome_region
SO:0000830	SO:0000664	\N	"A region of a chromosome." [SO:ke]	SO:0000664	"" []	490262	\N	SOFA	sequence	1	SO	chromosome_part	introgressed_chromosome_region
SO:0000340	SO:0000830	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000664	"" []	1072745	SOFA	SOFA	sequence	2	SO	chromosome	introgressed_chromosome_region
SO:0001411	SO:0000830	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000664	"" []	1072746	SOFA	SOFA	sequence	2	SO	biological_region	introgressed_chromosome_region
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000664	"" []	1903798	SOFA	SOFA	sequence	3	SO	replicon	introgressed_chromosome_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000664	"" []	4001613	SOFA	SOFA	sequence	5	SO	region	introgressed_chromosome_region
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000664	"" []	2928273	SOFA	SOFA	sequence	4	SO	biological_region	introgressed_chromosome_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000664	"" []	4132311	SOFA	SOFA	sequence	6	SO	sequence_feature	introgressed_chromosome_region
SO:0000665	\N	\N	"A transcript that is monocistronic." [SO:xp]	SO:0000665	"A transcript that is monocistronic." [SO:xp]	45601	\N	\N	sequence	0	SO	monocistronic_transcript	monocistronic_transcript
SO:0000673	SO:0000665	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000665	"A transcript that is monocistronic." [SO:xp]	490263	\N	SOFA	sequence	1	SO	transcript	monocistronic_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000665	"A transcript that is monocistronic." [SO:xp]	1072747	SOFA	SOFA	sequence	2	SO	gene_member_region	monocistronic_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000665	"A transcript that is monocistronic." [SO:xp]	1903800	SOFA	SOFA	sequence	3	SO	biological_region	monocistronic_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000665	"A transcript that is monocistronic." [SO:xp]	2928275	SOFA	SOFA	sequence	4	SO	region	monocistronic_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000665	"A transcript that is monocistronic." [SO:xp]	4001614	SOFA	SOFA	sequence	5	SO	sequence_feature	monocistronic_transcript
SO:0000666	\N	\N	"An intron (mitochondrial, chloroplast, nuclear or prokaryotic) that encodes a double strand sequence specific endonuclease allowing for mobility." [SO:ke]	SO:0000666	"An intron (mitochondrial, chloroplast, nuclear or prokaryotic) that encodes a double strand sequence specific endonuclease allowing for mobility." [SO:ke]	45602	\N	\N	sequence	0	SO	mobile_intron	mobile_intron
SO:0000188	SO:0000666	\N	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000666	"An intron (mitochondrial, chloroplast, nuclear or prokaryotic) that encodes a double strand sequence specific endonuclease allowing for mobility." [SO:ke]	490264	\N	SOFA	sequence	1	SO	intron	mobile_intron
SO:0001037	SO:0000666	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000666	"An intron (mitochondrial, chloroplast, nuclear or prokaryotic) that encodes a double strand sequence specific endonuclease allowing for mobility." [SO:ke]	490265	\N	SOFA	sequence	1	SO	mobile_genetic_element	mobile_intron
SO:0000835	SO:0000188	\N	"A part of a primary transcript." [SO:ke]	SO:0000666	"An intron (mitochondrial, chloroplast, nuclear or prokaryotic) that encodes a double strand sequence specific endonuclease allowing for mobility." [SO:ke]	1072748	SOFA	SOFA	sequence	2	SO	primary_transcript_region	mobile_intron
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000666	"An intron (mitochondrial, chloroplast, nuclear or prokaryotic) that encodes a double strand sequence specific endonuclease allowing for mobility." [SO:ke]	1072749	SOFA	SOFA	sequence	2	SO	biological_region	mobile_intron
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000666	"An intron (mitochondrial, chloroplast, nuclear or prokaryotic) that encodes a double strand sequence specific endonuclease allowing for mobility." [SO:ke]	1903801	SOFA	SOFA	sequence	3	SO	primary_transcript	mobile_intron
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0000666	"An intron (mitochondrial, chloroplast, nuclear or prokaryotic) that encodes a double strand sequence specific endonuclease allowing for mobility." [SO:ke]	1903802	SOFA	SOFA	sequence	3	SO	transcript_region	mobile_intron
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000666	"An intron (mitochondrial, chloroplast, nuclear or prokaryotic) that encodes a double strand sequence specific endonuclease allowing for mobility." [SO:ke]	5741031	SOFA	SOFA	sequence	7	SO	region	mobile_intron
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000666	"An intron (mitochondrial, chloroplast, nuclear or prokaryotic) that encodes a double strand sequence specific endonuclease allowing for mobility." [SO:ke]	2928276	SOFA	SOFA	sequence	4	SO	transcript	mobile_intron
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000666	"An intron (mitochondrial, chloroplast, nuclear or prokaryotic) that encodes a double strand sequence specific endonuclease allowing for mobility." [SO:ke]	2928277	SOFA	SOFA	sequence	4	SO	transcript	mobile_intron
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000666	"An intron (mitochondrial, chloroplast, nuclear or prokaryotic) that encodes a double strand sequence specific endonuclease allowing for mobility." [SO:ke]	2928278	SOFA	SOFA	sequence	4	SO	biological_region	mobile_intron
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000666	"An intron (mitochondrial, chloroplast, nuclear or prokaryotic) that encodes a double strand sequence specific endonuclease allowing for mobility." [SO:ke]	5817332	SOFA	SOFA	sequence	8	SO	sequence_feature	mobile_intron
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000666	"An intron (mitochondrial, chloroplast, nuclear or prokaryotic) that encodes a double strand sequence specific endonuclease allowing for mobility." [SO:ke]	4001615	SOFA	SOFA	sequence	5	SO	gene_member_region	mobile_intron
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000666	"An intron (mitochondrial, chloroplast, nuclear or prokaryotic) that encodes a double strand sequence specific endonuclease allowing for mobility." [SO:ke]	4966129	SOFA	SOFA	sequence	6	SO	biological_region	mobile_intron
SO:0000667	\N	DBVAR,SOFA	"The sequence of one or more nucleotides added between two adjacent nucleotides in the sequence." [SO:ke]	SO:0000667	"The sequence of one or more nucleotides added between two adjacent nucleotides in the sequence." [SO:ke]	45603	\N	DBVAR,SOFA	sequence	0	SO	insertion	insertion
SO:0001059	SO:0000667	DBVAR,SOFA	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0000667	"The sequence of one or more nucleotides added between two adjacent nucleotides in the sequence." [SO:ke]	490266	DBVAR,SOFA	SOFA	sequence	1	SO	sequence_alteration	insertion
SO:0001411	SO:0000667	DBVAR,SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000667	"The sequence of one or more nucleotides added between two adjacent nucleotides in the sequence." [SO:ke]	490267	DBVAR,SOFA	SOFA	sequence	1	SO	biological_region	insertion
SO:0002072	SO:0001059	DBVAR,SOFA	"" []	SO:0000667	"The sequence of one or more nucleotides added between two adjacent nucleotides in the sequence." [SO:ke]	1072750	SOFA	\N	sequence	2	SO	sequence_comparison	insertion
SO:0000001	SO:0001411	DBVAR,SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000667	"The sequence of one or more nucleotides added between two adjacent nucleotides in the sequence." [SO:ke]	1072751	SOFA	SOFA	sequence	2	SO	region	insertion
SO:0000110	SO:0002072	DBVAR,SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000667	"The sequence of one or more nucleotides added between two adjacent nucleotides in the sequence." [SO:ke]	1903804	\N	SOFA	sequence	3	SO	sequence_feature	insertion
SO:0000110	SO:0000001	DBVAR,SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000667	"The sequence of one or more nucleotides added between two adjacent nucleotides in the sequence." [SO:ke]	1903805	SOFA	SOFA	sequence	3	SO	sequence_feature	insertion
SO:0000668	\N	SOFA	"A match against an EST sequence." [SO:ke]	SO:0000668	"A match against an EST sequence." [SO:ke]	45604	\N	SOFA	sequence	0	SO	EST_match	EST_match
SO:0000102	SO:0000668	SOFA	"A match to an EST or cDNA sequence." [SO:ke]	SO:0000668	"A match against an EST sequence." [SO:ke]	490268	SOFA	SOFA	sequence	1	SO	expressed_sequence_match	EST_match
SO:0000347	SO:0000102	SOFA	"A match against a nucleotide sequence." [SO:ke]	SO:0000668	"A match against an EST sequence." [SO:ke]	1072752	SOFA	SOFA	sequence	2	SO	nucleotide_match	EST_match
SO:0000343	SO:0000347	SOFA	"A region of sequence, aligned to another sequence with some statistical significance, using an algorithm such as BLAST or SIM4." [SO:ke]	SO:0000668	"A match against an EST sequence." [SO:ke]	1903806	SOFA	SOFA	sequence	3	SO	match	EST_match
SO:0001410	SO:0000343	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000668	"A match against an EST sequence." [SO:ke]	2928280	SOFA	SOFA	sequence	4	SO	experimental_feature	EST_match
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000668	"A match against an EST sequence." [SO:ke]	4001617	SOFA	SOFA	sequence	5	SO	region	EST_match
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000668	"A match against an EST sequence." [SO:ke]	4966130	SOFA	SOFA	sequence	6	SO	sequence_feature	EST_match
SO:0000669	\N	\N	"" []	SO:0000669	"" []	45605	\N	\N	sequence	0	SO	sequence_rearrangement_feature	sequence_rearrangement_feature
SO:0000298	SO:0000669	\N	"" []	SO:0000669	"" []	490269	\N	\N	sequence	1	SO	recombination_feature	sequence_rearrangement_feature
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000669	"" []	1072753	\N	SOFA	sequence	2	SO	biological_region	sequence_rearrangement_feature
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000669	"" []	1903807	SOFA	SOFA	sequence	3	SO	region	sequence_rearrangement_feature
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000669	"" []	2928281	SOFA	SOFA	sequence	4	SO	sequence_feature	sequence_rearrangement_feature
SO:0000670	\N	\N	"A sequence within the micronuclear DNA of ciliates at which chromosome breakage and telomere addition occurs during nuclear differentiation." [SO:ma]	SO:0000670	"A sequence within the micronuclear DNA of ciliates at which chromosome breakage and telomere addition occurs during nuclear differentiation." [SO:ma]	45606	\N	\N	sequence	0	SO	chromosome_breakage_sequence	chromosome_breakage_sequence
SO:0000669	SO:0000670	\N	"" []	SO:0000670	"A sequence within the micronuclear DNA of ciliates at which chromosome breakage and telomere addition occurs during nuclear differentiation." [SO:ma]	490270	\N	\N	sequence	1	SO	sequence_rearrangement_feature	chromosome_breakage_sequence
SO:0000298	SO:0000669	\N	"" []	SO:0000670	"A sequence within the micronuclear DNA of ciliates at which chromosome breakage and telomere addition occurs during nuclear differentiation." [SO:ma]	1072754	\N	\N	sequence	2	SO	recombination_feature	chromosome_breakage_sequence
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000670	"A sequence within the micronuclear DNA of ciliates at which chromosome breakage and telomere addition occurs during nuclear differentiation." [SO:ma]	1903808	\N	SOFA	sequence	3	SO	biological_region	chromosome_breakage_sequence
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000670	"A sequence within the micronuclear DNA of ciliates at which chromosome breakage and telomere addition occurs during nuclear differentiation." [SO:ma]	2928282	SOFA	SOFA	sequence	4	SO	region	chromosome_breakage_sequence
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000670	"A sequence within the micronuclear DNA of ciliates at which chromosome breakage and telomere addition occurs during nuclear differentiation." [SO:ma]	4001618	SOFA	SOFA	sequence	5	SO	sequence_feature	chromosome_breakage_sequence
SO:0000671	\N	\N	"A sequence eliminated from the genome of ciliates during nuclear differentiation." [SO:ma]	SO:0000671	"A sequence eliminated from the genome of ciliates during nuclear differentiation." [SO:ma]	45607	\N	\N	sequence	0	SO	internal_eliminated_sequence	internal_eliminated_sequence
SO:0000669	SO:0000671	\N	"" []	SO:0000671	"A sequence eliminated from the genome of ciliates during nuclear differentiation." [SO:ma]	490271	\N	\N	sequence	1	SO	sequence_rearrangement_feature	internal_eliminated_sequence
SO:0000298	SO:0000669	\N	"" []	SO:0000671	"A sequence eliminated from the genome of ciliates during nuclear differentiation." [SO:ma]	1072755	\N	\N	sequence	2	SO	recombination_feature	internal_eliminated_sequence
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000671	"A sequence eliminated from the genome of ciliates during nuclear differentiation." [SO:ma]	1903809	\N	SOFA	sequence	3	SO	biological_region	internal_eliminated_sequence
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000671	"A sequence eliminated from the genome of ciliates during nuclear differentiation." [SO:ma]	2928283	SOFA	SOFA	sequence	4	SO	region	internal_eliminated_sequence
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000671	"A sequence eliminated from the genome of ciliates during nuclear differentiation." [SO:ma]	4001619	SOFA	SOFA	sequence	5	SO	sequence_feature	internal_eliminated_sequence
SO:0000672	\N	\N	"A sequence that is conserved, although rearranged relative to the micronucleus, in the macronucleus of a ciliate genome." [SO:ma]	SO:0000672	"A sequence that is conserved, although rearranged relative to the micronucleus, in the macronucleus of a ciliate genome." [SO:ma]	45608	\N	\N	sequence	0	SO	macronucleus_destined_segment	macronucleus_destined_segment
SO:0000669	SO:0000672	\N	"" []	SO:0000672	"A sequence that is conserved, although rearranged relative to the micronucleus, in the macronucleus of a ciliate genome." [SO:ma]	490272	\N	\N	sequence	1	SO	sequence_rearrangement_feature	macronucleus_destined_segment
SO:0000298	SO:0000669	\N	"" []	SO:0000672	"A sequence that is conserved, although rearranged relative to the micronucleus, in the macronucleus of a ciliate genome." [SO:ma]	1072756	\N	\N	sequence	2	SO	recombination_feature	macronucleus_destined_segment
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000672	"A sequence that is conserved, although rearranged relative to the micronucleus, in the macronucleus of a ciliate genome." [SO:ma]	1903810	\N	SOFA	sequence	3	SO	biological_region	macronucleus_destined_segment
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000672	"A sequence that is conserved, although rearranged relative to the micronucleus, in the macronucleus of a ciliate genome." [SO:ma]	2928284	SOFA	SOFA	sequence	4	SO	region	macronucleus_destined_segment
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000672	"A sequence that is conserved, although rearranged relative to the micronucleus, in the macronucleus of a ciliate genome." [SO:ma]	4001620	SOFA	SOFA	sequence	5	SO	sequence_feature	macronucleus_destined_segment
SO:0000673	\N	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000673	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	45609	\N	SOFA	sequence	0	SO	transcript	transcript
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000673	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	490273	SOFA	SOFA	sequence	1	SO	gene_member_region	transcript
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000673	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	1072757	SOFA	SOFA	sequence	2	SO	biological_region	transcript
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000673	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	1903811	SOFA	SOFA	sequence	3	SO	region	transcript
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000673	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	2928285	SOFA	SOFA	sequence	4	SO	sequence_feature	transcript
SO:0000676	\N	\N	"The canonical 3' splice site has the sequence \\"AG\\"." [SO:ke]	SO:0000676	"The canonical 3' splice site has the sequence \\"AG\\"." [SO:ke]	45610	\N	\N	sequence	0	SO	canonical_three_prime_splice_site	canonical_three_prime_splice_site
SO:0000164	SO:0000676	\N	"Intronic 2 bp region bordering the exon, at the 3' edge of the intron. A splice_site that is upstream_adjacent_to exon and finishes intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	SO:0000676	"The canonical 3' splice site has the sequence \\"AG\\"." [SO:ke]	490274	\N	SOFA	sequence	1	SO	three_prime_cis_splice_site	canonical_three_prime_splice_site
SO:0001419	SO:0000164	\N	"Intronic 2 bp region bordering exon. A splice_site that adjacent_to exon and overlaps intron." [SO:cjm, SO:ke]	SO:0000676	"The canonical 3' splice site has the sequence \\"AG\\"." [SO:ke]	1072758	SOFA	SOFA	sequence	2	SO	cis_splice_site	canonical_three_prime_splice_site
SO:0000162	SO:0001419	\N	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	SO:0000676	"The canonical 3' splice site has the sequence \\"AG\\"." [SO:ke]	1903812	SOFA	SOFA	sequence	3	SO	splice_site	canonical_three_prime_splice_site
SO:0000835	SO:0000162	\N	"A part of a primary transcript." [SO:ke]	SO:0000676	"The canonical 3' splice site has the sequence \\"AG\\"." [SO:ke]	2928286	SOFA	SOFA	sequence	4	SO	primary_transcript_region	canonical_three_prime_splice_site
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000676	"The canonical 3' splice site has the sequence \\"AG\\"." [SO:ke]	4001621	SOFA	SOFA	sequence	5	SO	primary_transcript	canonical_three_prime_splice_site
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0000676	"The canonical 3' splice site has the sequence \\"AG\\"." [SO:ke]	4001622	SOFA	SOFA	sequence	5	SO	transcript_region	canonical_three_prime_splice_site
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000676	"The canonical 3' splice site has the sequence \\"AG\\"." [SO:ke]	4966131	SOFA	SOFA	sequence	6	SO	transcript	canonical_three_prime_splice_site
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000676	"The canonical 3' splice site has the sequence \\"AG\\"." [SO:ke]	4966132	SOFA	SOFA	sequence	6	SO	transcript	canonical_three_prime_splice_site
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000676	"The canonical 3' splice site has the sequence \\"AG\\"." [SO:ke]	4966133	SOFA	SOFA	sequence	6	SO	biological_region	canonical_three_prime_splice_site
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000676	"The canonical 3' splice site has the sequence \\"AG\\"." [SO:ke]	5741032	SOFA	SOFA	sequence	7	SO	gene_member_region	canonical_three_prime_splice_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000676	"The canonical 3' splice site has the sequence \\"AG\\"." [SO:ke]	6699314	SOFA	SOFA	sequence	9	SO	region	canonical_three_prime_splice_site
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000676	"The canonical 3' splice site has the sequence \\"AG\\"." [SO:ke]	6310957	SOFA	SOFA	sequence	8	SO	biological_region	canonical_three_prime_splice_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000676	"The canonical 3' splice site has the sequence \\"AG\\"." [SO:ke]	6888932	SOFA	SOFA	sequence	10	SO	sequence_feature	canonical_three_prime_splice_site
SO:0000677	\N	\N	"The canonical 5' splice site has the sequence \\"GT\\"." [SO:ke]	SO:0000677	"The canonical 5' splice site has the sequence \\"GT\\"." [SO:ke]	45611	\N	\N	sequence	0	SO	canonical_five_prime_splice_site	canonical_five_prime_splice_site
SO:0000163	SO:0000677	\N	"Intronic 2 bp region bordering the exon, at the 5' edge of the intron. A splice_site that is downstream_adjacent_to exon and starts intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	SO:0000677	"The canonical 5' splice site has the sequence \\"GT\\"." [SO:ke]	490275	\N	SOFA	sequence	1	SO	five_prime_cis_splice_site	canonical_five_prime_splice_site
SO:0001419	SO:0000163	\N	"Intronic 2 bp region bordering exon. A splice_site that adjacent_to exon and overlaps intron." [SO:cjm, SO:ke]	SO:0000677	"The canonical 5' splice site has the sequence \\"GT\\"." [SO:ke]	1072759	SOFA	SOFA	sequence	2	SO	cis_splice_site	canonical_five_prime_splice_site
SO:0000162	SO:0001419	\N	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	SO:0000677	"The canonical 5' splice site has the sequence \\"GT\\"." [SO:ke]	1903813	SOFA	SOFA	sequence	3	SO	splice_site	canonical_five_prime_splice_site
SO:0000835	SO:0000162	\N	"A part of a primary transcript." [SO:ke]	SO:0000677	"The canonical 5' splice site has the sequence \\"GT\\"." [SO:ke]	2928287	SOFA	SOFA	sequence	4	SO	primary_transcript_region	canonical_five_prime_splice_site
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000677	"The canonical 5' splice site has the sequence \\"GT\\"." [SO:ke]	4001623	SOFA	SOFA	sequence	5	SO	primary_transcript	canonical_five_prime_splice_site
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0000677	"The canonical 5' splice site has the sequence \\"GT\\"." [SO:ke]	4001624	SOFA	SOFA	sequence	5	SO	transcript_region	canonical_five_prime_splice_site
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000677	"The canonical 5' splice site has the sequence \\"GT\\"." [SO:ke]	4966134	SOFA	SOFA	sequence	6	SO	transcript	canonical_five_prime_splice_site
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000677	"The canonical 5' splice site has the sequence \\"GT\\"." [SO:ke]	4966135	SOFA	SOFA	sequence	6	SO	transcript	canonical_five_prime_splice_site
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000677	"The canonical 5' splice site has the sequence \\"GT\\"." [SO:ke]	4966136	SOFA	SOFA	sequence	6	SO	biological_region	canonical_five_prime_splice_site
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000677	"The canonical 5' splice site has the sequence \\"GT\\"." [SO:ke]	5741034	SOFA	SOFA	sequence	7	SO	gene_member_region	canonical_five_prime_splice_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000677	"The canonical 5' splice site has the sequence \\"GT\\"." [SO:ke]	6699315	SOFA	SOFA	sequence	9	SO	region	canonical_five_prime_splice_site
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000677	"The canonical 5' splice site has the sequence \\"GT\\"." [SO:ke]	6310959	SOFA	SOFA	sequence	8	SO	biological_region	canonical_five_prime_splice_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000677	"The canonical 5' splice site has the sequence \\"GT\\"." [SO:ke]	6888933	SOFA	SOFA	sequence	10	SO	sequence_feature	canonical_five_prime_splice_site
SO:0000678	\N	\N	"A 3' splice site that does not have the sequence \\"AG\\"." [SO:ke]	SO:0000678	"A 3' splice site that does not have the sequence \\"AG\\"." [SO:ke]	45612	\N	\N	sequence	0	SO	non_canonical_three_prime_splice_site	non_canonical_three_prime_splice_site
SO:0000164	SO:0000678	\N	"Intronic 2 bp region bordering the exon, at the 3' edge of the intron. A splice_site that is upstream_adjacent_to exon and finishes intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	SO:0000678	"A 3' splice site that does not have the sequence \\"AG\\"." [SO:ke]	490276	\N	SOFA	sequence	1	SO	three_prime_cis_splice_site	non_canonical_three_prime_splice_site
SO:0001419	SO:0000164	\N	"Intronic 2 bp region bordering exon. A splice_site that adjacent_to exon and overlaps intron." [SO:cjm, SO:ke]	SO:0000678	"A 3' splice site that does not have the sequence \\"AG\\"." [SO:ke]	1072760	SOFA	SOFA	sequence	2	SO	cis_splice_site	non_canonical_three_prime_splice_site
SO:0000162	SO:0001419	\N	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	SO:0000678	"A 3' splice site that does not have the sequence \\"AG\\"." [SO:ke]	1903814	SOFA	SOFA	sequence	3	SO	splice_site	non_canonical_three_prime_splice_site
SO:0000835	SO:0000162	\N	"A part of a primary transcript." [SO:ke]	SO:0000678	"A 3' splice site that does not have the sequence \\"AG\\"." [SO:ke]	2928288	SOFA	SOFA	sequence	4	SO	primary_transcript_region	non_canonical_three_prime_splice_site
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000678	"A 3' splice site that does not have the sequence \\"AG\\"." [SO:ke]	4001625	SOFA	SOFA	sequence	5	SO	primary_transcript	non_canonical_three_prime_splice_site
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0000678	"A 3' splice site that does not have the sequence \\"AG\\"." [SO:ke]	4001626	SOFA	SOFA	sequence	5	SO	transcript_region	non_canonical_three_prime_splice_site
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000678	"A 3' splice site that does not have the sequence \\"AG\\"." [SO:ke]	4966137	SOFA	SOFA	sequence	6	SO	transcript	non_canonical_three_prime_splice_site
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000678	"A 3' splice site that does not have the sequence \\"AG\\"." [SO:ke]	4966138	SOFA	SOFA	sequence	6	SO	transcript	non_canonical_three_prime_splice_site
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000678	"A 3' splice site that does not have the sequence \\"AG\\"." [SO:ke]	4966139	SOFA	SOFA	sequence	6	SO	biological_region	non_canonical_three_prime_splice_site
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000678	"A 3' splice site that does not have the sequence \\"AG\\"." [SO:ke]	5741036	SOFA	SOFA	sequence	7	SO	gene_member_region	non_canonical_three_prime_splice_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000678	"A 3' splice site that does not have the sequence \\"AG\\"." [SO:ke]	6699316	SOFA	SOFA	sequence	9	SO	region	non_canonical_three_prime_splice_site
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000678	"A 3' splice site that does not have the sequence \\"AG\\"." [SO:ke]	6310961	SOFA	SOFA	sequence	8	SO	biological_region	non_canonical_three_prime_splice_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000678	"A 3' splice site that does not have the sequence \\"AG\\"." [SO:ke]	6888934	SOFA	SOFA	sequence	10	SO	sequence_feature	non_canonical_three_prime_splice_site
SO:0000679	\N	\N	"A 5' splice site which does not have the sequence \\"GT\\"." [SO:ke]	SO:0000679	"A 5' splice site which does not have the sequence \\"GT\\"." [SO:ke]	45613	\N	\N	sequence	0	SO	non_canonical_five_prime_splice_site	non_canonical_five_prime_splice_site
SO:0000163	SO:0000679	\N	"Intronic 2 bp region bordering the exon, at the 5' edge of the intron. A splice_site that is downstream_adjacent_to exon and starts intron." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke]	SO:0000679	"A 5' splice site which does not have the sequence \\"GT\\"." [SO:ke]	490277	\N	SOFA	sequence	1	SO	five_prime_cis_splice_site	non_canonical_five_prime_splice_site
SO:0001419	SO:0000163	\N	"Intronic 2 bp region bordering exon. A splice_site that adjacent_to exon and overlaps intron." [SO:cjm, SO:ke]	SO:0000679	"A 5' splice site which does not have the sequence \\"GT\\"." [SO:ke]	1072761	SOFA	SOFA	sequence	2	SO	cis_splice_site	non_canonical_five_prime_splice_site
SO:0000162	SO:0001419	\N	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	SO:0000679	"A 5' splice site which does not have the sequence \\"GT\\"." [SO:ke]	1903815	SOFA	SOFA	sequence	3	SO	splice_site	non_canonical_five_prime_splice_site
SO:0000835	SO:0000162	\N	"A part of a primary transcript." [SO:ke]	SO:0000679	"A 5' splice site which does not have the sequence \\"GT\\"." [SO:ke]	2928289	SOFA	SOFA	sequence	4	SO	primary_transcript_region	non_canonical_five_prime_splice_site
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000679	"A 5' splice site which does not have the sequence \\"GT\\"." [SO:ke]	4001627	SOFA	SOFA	sequence	5	SO	primary_transcript	non_canonical_five_prime_splice_site
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0000679	"A 5' splice site which does not have the sequence \\"GT\\"." [SO:ke]	4001628	SOFA	SOFA	sequence	5	SO	transcript_region	non_canonical_five_prime_splice_site
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000679	"A 5' splice site which does not have the sequence \\"GT\\"." [SO:ke]	4966140	SOFA	SOFA	sequence	6	SO	transcript	non_canonical_five_prime_splice_site
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000679	"A 5' splice site which does not have the sequence \\"GT\\"." [SO:ke]	4966141	SOFA	SOFA	sequence	6	SO	transcript	non_canonical_five_prime_splice_site
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000679	"A 5' splice site which does not have the sequence \\"GT\\"." [SO:ke]	4966142	SOFA	SOFA	sequence	6	SO	biological_region	non_canonical_five_prime_splice_site
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000679	"A 5' splice site which does not have the sequence \\"GT\\"." [SO:ke]	5741038	SOFA	SOFA	sequence	7	SO	gene_member_region	non_canonical_five_prime_splice_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000679	"A 5' splice site which does not have the sequence \\"GT\\"." [SO:ke]	6699317	SOFA	SOFA	sequence	9	SO	region	non_canonical_five_prime_splice_site
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000679	"A 5' splice site which does not have the sequence \\"GT\\"." [SO:ke]	6310963	SOFA	SOFA	sequence	8	SO	biological_region	non_canonical_five_prime_splice_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000679	"A 5' splice site which does not have the sequence \\"GT\\"." [SO:ke]	6888935	SOFA	SOFA	sequence	10	SO	sequence_feature	non_canonical_five_prime_splice_site
SO:0000680	\N	\N	"A start codon that is not the usual AUG sequence." [SO:ke]	SO:0000680	"A start codon that is not the usual AUG sequence." [SO:ke]	45614	\N	\N	sequence	0	SO	non_canonical_start_codon	non_canonical_start_codon
SO:0000318	SO:0000680	\N	"First codon to be translated by a ribosome." [SO:ke]	SO:0000680	"A start codon that is not the usual AUG sequence." [SO:ke]	490278	\N	SOFA	sequence	1	SO	start_codon	non_canonical_start_codon
SO:0000360	SO:0000318	\N	"A set of (usually) three nucleotide bases in a DNA or RNA sequence, which together code for a unique amino acid or the termination of translation and are contained within the CDS." [SO:ke]	SO:0000680	"A start codon that is not the usual AUG sequence." [SO:ke]	1072762	SOFA	SOFA	sequence	2	SO	codon	non_canonical_start_codon
SO:0000851	SO:0000360	\N	"A region of a CDS." [SO:cb]	SO:0000680	"A start codon that is not the usual AUG sequence." [SO:ke]	1903816	SOFA	SOFA	sequence	3	SO	CDS_region	non_canonical_start_codon
SO:0000316	SO:0000851	\N	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	SO:0000680	"A start codon that is not the usual AUG sequence." [SO:ke]	2928290	SOFA	SOFA	sequence	4	SO	CDS	non_canonical_start_codon
SO:0000836	SO:0000851	\N	"A region of an mRNA." [SO:cb]	SO:0000680	"A start codon that is not the usual AUG sequence." [SO:ke]	2928291	SOFA	SOFA	sequence	4	SO	mRNA_region	non_canonical_start_codon
SO:0000836	SO:0000316	\N	"A region of an mRNA." [SO:cb]	SO:0000680	"A start codon that is not the usual AUG sequence." [SO:ke]	4001629	SOFA	SOFA	sequence	5	SO	mRNA_region	non_canonical_start_codon
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000680	"A start codon that is not the usual AUG sequence." [SO:ke]	4966143	SOFA	SOFA	sequence	6	SO	mRNA	non_canonical_start_codon
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:0000680	"A start codon that is not the usual AUG sequence." [SO:ke]	4966144	SOFA	SOFA	sequence	6	SO	mature_transcript_region	non_canonical_start_codon
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000680	"A start codon that is not the usual AUG sequence." [SO:ke]	5407410	SOFA	SOFA	sequence	7	SO	mature_transcript	non_canonical_start_codon
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0000680	"A start codon that is not the usual AUG sequence." [SO:ke]	5407411	SOFA	SOFA	sequence	7	SO	transcript_region	non_canonical_start_codon
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000680	"A start codon that is not the usual AUG sequence." [SO:ke]	6146632	SOFA	SOFA	sequence	8	SO	transcript	non_canonical_start_codon
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000680	"A start codon that is not the usual AUG sequence." [SO:ke]	6146633	SOFA	SOFA	sequence	8	SO	transcript	non_canonical_start_codon
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000680	"A start codon that is not the usual AUG sequence." [SO:ke]	6146634	SOFA	SOFA	sequence	8	SO	biological_region	non_canonical_start_codon
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000680	"A start codon that is not the usual AUG sequence." [SO:ke]	6631386	SOFA	SOFA	sequence	9	SO	gene_member_region	non_canonical_start_codon
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000680	"A start codon that is not the usual AUG sequence." [SO:ke]	7098881	SOFA	SOFA	sequence	11	SO	region	non_canonical_start_codon
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000680	"A start codon that is not the usual AUG sequence." [SO:ke]	6925085	SOFA	SOFA	sequence	10	SO	biological_region	non_canonical_start_codon
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000680	"A start codon that is not the usual AUG sequence." [SO:ke]	7197149	SOFA	SOFA	sequence	12	SO	sequence_feature	non_canonical_start_codon
SO:0000681	\N	\N	"A transcript that has been processed \\"incorrectly\\", for example by the failure of splicing of one or more exons." [SO:ke]	SO:0000681	"A transcript that has been processed \\"incorrectly\\", for example by the failure of splicing of one or more exons." [SO:ke]	45615	\N	\N	sequence	0	SO	aberrant_processed_transcript	aberrant_processed_transcript
SO:0000673	SO:0000681	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000681	"A transcript that has been processed \\"incorrectly\\", for example by the failure of splicing of one or more exons." [SO:ke]	490279	\N	SOFA	sequence	1	SO	transcript	aberrant_processed_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000681	"A transcript that has been processed \\"incorrectly\\", for example by the failure of splicing of one or more exons." [SO:ke]	1072763	SOFA	SOFA	sequence	2	SO	gene_member_region	aberrant_processed_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000681	"A transcript that has been processed \\"incorrectly\\", for example by the failure of splicing of one or more exons." [SO:ke]	1903817	SOFA	SOFA	sequence	3	SO	biological_region	aberrant_processed_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000681	"A transcript that has been processed \\"incorrectly\\", for example by the failure of splicing of one or more exons." [SO:ke]	2928292	SOFA	SOFA	sequence	4	SO	region	aberrant_processed_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000681	"A transcript that has been processed \\"incorrectly\\", for example by the failure of splicing of one or more exons." [SO:ke]	4001632	SOFA	SOFA	sequence	5	SO	sequence_feature	aberrant_processed_transcript
SO:0000683	\N	\N	"Exonic splicing enhancers (ESEs) facilitate exon definition by assisting in the recruitment of splicing factors to the adjacent intron." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12403462&dopt=Abstract]	SO:0000683	"Exonic splicing enhancers (ESEs) facilitate exon definition by assisting in the recruitment of splicing factors to the adjacent intron." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12403462&dopt=Abstract]	45616	\N	\N	sequence	0	SO	exonic_splice_enhancer	exonic_splice_enhancer
SO:0000344	SO:0000683	\N	"Region of a transcript that regulates splicing." [SO:ke]	SO:0000683	"Exonic splicing enhancers (ESEs) facilitate exon definition by assisting in the recruitment of splicing factors to the adjacent intron." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12403462&dopt=Abstract]	490280	\N	SOFA	sequence	1	SO	splice_enhancer	exonic_splice_enhancer
SO:0000165	SO:0000344	\N	"A cis-acting sequence that increases the utilization of (some) eukaryotic promoters, and can function in either orientation and in any location (upstream or downstream) relative to the promoter." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000683	"Exonic splicing enhancers (ESEs) facilitate exon definition by assisting in the recruitment of splicing factors to the adjacent intron." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12403462&dopt=Abstract]	1072764	SOFA	SOFA	sequence	2	SO	enhancer	exonic_splice_enhancer
SO:0001056	SO:0000344	\N	"A regulatory_region that modulates splicing." [SO:ke]	SO:0000683	"Exonic splicing enhancers (ESEs) facilitate exon definition by assisting in the recruitment of splicing factors to the adjacent intron." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12403462&dopt=Abstract]	1072765	SOFA	SOFA	sequence	2	SO	splicing_regulatory_region	exonic_splice_enhancer
SO:0000727	SO:0000165	\N	"A regulatory region where transcription factor binding sites clustered to regulate various aspects of transcription activities. (CRMs can be located a few kb to hundred kb upstream of the basal promoter, in the coding sequence, within introns, or in the downstream 3'UTR sequences, as well as on different chromosome). A single gene can be regulated by multiple CRMs to give precise control of its spatial and temporal expression. CRMs function as nodes in large, intertwined regulatory network." [PMID:19660565, SO:SG]	SO:0000683	"Exonic splicing enhancers (ESEs) facilitate exon definition by assisting in the recruitment of splicing factors to the adjacent intron." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12403462&dopt=Abstract]	1903818	SOFA	SOFA	sequence	3	SO	CRM	exonic_splice_enhancer
SO:0001679	SO:0001056	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000683	"Exonic splicing enhancers (ESEs) facilitate exon definition by assisting in the recruitment of splicing factors to the adjacent intron." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12403462&dopt=Abstract]	1903819	SOFA	SOFA	sequence	3	SO	transcription_regulatory_region	exonic_splice_enhancer
SO:0001055	SO:0000727	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0000683	"Exonic splicing enhancers (ESEs) facilitate exon definition by assisting in the recruitment of splicing factors to the adjacent intron." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12403462&dopt=Abstract]	2928293	SOFA	SOFA	sequence	4	SO	transcriptional_cis_regulatory_region	exonic_splice_enhancer
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000683	"Exonic splicing enhancers (ESEs) facilitate exon definition by assisting in the recruitment of splicing factors to the adjacent intron." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12403462&dopt=Abstract]	4966147	SOFA	SOFA	sequence	6	SO	regulatory_region	exonic_splice_enhancer
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000683	"Exonic splicing enhancers (ESEs) facilitate exon definition by assisting in the recruitment of splicing factors to the adjacent intron." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12403462&dopt=Abstract]	4001633	SOFA	SOFA	sequence	5	SO	transcription_regulatory_region	exonic_splice_enhancer
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0000683	"Exonic splicing enhancers (ESEs) facilitate exon definition by assisting in the recruitment of splicing factors to the adjacent intron." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12403462&dopt=Abstract]	5180702	SOFA	SOFA	sequence	7	SO	gene_member_region	exonic_splice_enhancer
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000683	"Exonic splicing enhancers (ESEs) facilitate exon definition by assisting in the recruitment of splicing factors to the adjacent intron." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12403462&dopt=Abstract]	5996401	SOFA	SOFA	sequence	8	SO	biological_region	exonic_splice_enhancer
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000683	"Exonic splicing enhancers (ESEs) facilitate exon definition by assisting in the recruitment of splicing factors to the adjacent intron." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12403462&dopt=Abstract]	6550265	SOFA	SOFA	sequence	9	SO	region	exonic_splice_enhancer
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000683	"Exonic splicing enhancers (ESEs) facilitate exon definition by assisting in the recruitment of splicing factors to the adjacent intron." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12403462&dopt=Abstract]	6888936	SOFA	SOFA	sequence	10	SO	sequence_feature	exonic_splice_enhancer
SO:0000684	\N	SOFA	"A region of nucleotide sequence targeted by a nuclease enzyme." [SO:ma]	SO:0000684	"A region of nucleotide sequence targeted by a nuclease enzyme." [SO:ma]	45617	\N	SOFA	sequence	0	SO	nuclease_sensitive_site	nuclease_sensitive_site
SO:0000059	SO:0000684	SOFA	"A binding site that, of a nucleotide molecule, that interacts selectively and non-covalently with polypeptide residues of a nuclease." [SO:cb]	SO:0000684	"A region of nucleotide sequence targeted by a nuclease enzyme." [SO:ma]	490281	SOFA	SOFA	sequence	1	SO	nuclease_binding_site	nuclease_sensitive_site
SO:0001654	SO:0000059	SOFA	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	SO:0000684	"A region of nucleotide sequence targeted by a nuclease enzyme." [SO:ma]	1072766	SOFA	SOFA	sequence	2	SO	nucleotide_to_protein_binding_site	nuclease_sensitive_site
SO:0000410	SO:0001654	SOFA	"A binding site that, in the molecule, interacts selectively and non-covalently with polypeptide molecules." [SO:ke]	SO:0000684	"A region of nucleotide sequence targeted by a nuclease enzyme." [SO:ma]	1903820	SOFA	SOFA	sequence	3	SO	protein_binding_site	nuclease_sensitive_site
SO:0000409	SO:0000410	SOFA	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0000684	"A region of nucleotide sequence targeted by a nuclease enzyme." [SO:ma]	2928295	SOFA	biosapiens,SOFA	sequence	4	SO	binding_site	nuclease_sensitive_site
SO:0001411	SO:0000409	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000684	"A region of nucleotide sequence targeted by a nuclease enzyme." [SO:ma]	4001635	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	nuclease_sensitive_site
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000684	"A region of nucleotide sequence targeted by a nuclease enzyme." [SO:ma]	4966149	SOFA	SOFA	sequence	6	SO	region	nuclease_sensitive_site
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000684	"A region of nucleotide sequence targeted by a nuclease enzyme." [SO:ma]	5741044	SOFA	SOFA	sequence	7	SO	sequence_feature	nuclease_sensitive_site
SO:0000685	\N	\N	"" []	SO:0000685	"" []	45618	\N	\N	sequence	0	SO	DNAseI_hypersensitive_site	DNAseI_hypersensitive_site
SO:0000322	SO:0000685	\N	"" []	SO:0000685	"" []	490282	\N	\N	sequence	1	SO	nuclease_hypersensitive_site	DNAseI_hypersensitive_site
SO:0000684	SO:0000322	\N	"A region of nucleotide sequence targeted by a nuclease enzyme." [SO:ma]	SO:0000685	"" []	1072767	\N	SOFA	sequence	2	SO	nuclease_sensitive_site	DNAseI_hypersensitive_site
SO:0000059	SO:0000684	\N	"A binding site that, of a nucleotide molecule, that interacts selectively and non-covalently with polypeptide residues of a nuclease." [SO:cb]	SO:0000685	"" []	1903821	SOFA	SOFA	sequence	3	SO	nuclease_binding_site	DNAseI_hypersensitive_site
SO:0001654	SO:0000059	\N	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	SO:0000685	"" []	2928296	SOFA	SOFA	sequence	4	SO	nucleotide_to_protein_binding_site	DNAseI_hypersensitive_site
SO:0000410	SO:0001654	\N	"A binding site that, in the molecule, interacts selectively and non-covalently with polypeptide molecules." [SO:ke]	SO:0000685	"" []	4001636	SOFA	SOFA	sequence	5	SO	protein_binding_site	DNAseI_hypersensitive_site
SO:0000409	SO:0000410	\N	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0000685	"" []	4966150	SOFA	biosapiens,SOFA	sequence	6	SO	binding_site	DNAseI_hypersensitive_site
SO:0001411	SO:0000409	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000685	"" []	5741045	biosapiens,SOFA	SOFA	sequence	7	SO	biological_region	DNAseI_hypersensitive_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000685	"" []	6310968	SOFA	SOFA	sequence	8	SO	region	DNAseI_hypersensitive_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000685	"" []	6699320	SOFA	SOFA	sequence	9	SO	sequence_feature	DNAseI_hypersensitive_site
SO:0000686	\N	\N	"A chromosomal translocation whereby the chromosomes carrying non-homologous centromeres may be recovered independently. These chromosomes are described as translocation elements. This occurs for some translocations, particularly but not exclusively, reciprocal translocations." [SO:ma]	SO:0000686	"A chromosomal translocation whereby the chromosomes carrying non-homologous centromeres may be recovered independently. These chromosomes are described as translocation elements. This occurs for some translocations, particularly but not exclusively, reciprocal translocations." [SO:ma]	45619	\N	\N	sequence	0	SO	translocation_element	translocation_element
SO:1000044	SO:0000686	\N	"A chromosomal mutation. Rearrangements that alter the pairing of telomeres are classified as translocations." [FB:reference_manual]	SO:0000686	"A chromosomal translocation whereby the chromosomes carrying non-homologous centromeres may be recovered independently. These chromosomes are described as translocation elements. This occurs for some translocations, particularly but not exclusively, reciprocal translocations." [SO:ma]	490283	\N	\N	sequence	1	SO	chromosomal_translocation	translocation_element
SO:0000199	SO:1000044	\N	"A region of nucleotide sequence that has translocated to a new position. The observed adjacency of two previously separated regions." [NCBI:th, SO:ke]	SO:0000686	"A chromosomal translocation whereby the chromosomes carrying non-homologous centromeres may be recovered independently. These chromosomes are described as translocation elements. This occurs for some translocations, particularly but not exclusively, reciprocal translocations." [SO:ma]	1072768	\N	DBVAR	sequence	2	SO	translocation	translocation_element
SO:1000031	SO:1000044	\N	"A chromosomal structure variation whereby more than one chromosome is involved." [SO:ke]	SO:0000686	"A chromosomal translocation whereby the chromosomes carrying non-homologous centromeres may be recovered independently. These chromosomes are described as translocation elements. This occurs for some translocations, particularly but not exclusively, reciprocal translocations." [SO:ma]	1072769	\N	\N	sequence	2	SO	interchromosomal_mutation	translocation_element
SO:0001785	SO:0000199	\N	"" []	SO:0000686	"A chromosomal translocation whereby the chromosomes carrying non-homologous centromeres may be recovered independently. These chromosomes are described as translocation elements. This occurs for some translocations, particularly but not exclusively, reciprocal translocations." [SO:ma]	1903822	DBVAR	DBVAR	sequence	3	SO	structural_alteration	translocation_element
SO:1000183	SO:1000031	\N	"" []	SO:0000686	"A chromosomal translocation whereby the chromosomes carrying non-homologous centromeres may be recovered independently. These chromosomes are described as translocation elements. This occurs for some translocations, particularly but not exclusively, reciprocal translocations." [SO:ma]	1903823	\N	\N	sequence	3	SO	chromosome_structure_variation	translocation_element
SO:0001059	SO:0001785	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0000686	"A chromosomal translocation whereby the chromosomes carrying non-homologous centromeres may be recovered independently. These chromosomes are described as translocation elements. This occurs for some translocations, particularly but not exclusively, reciprocal translocations." [SO:ma]	2928297	DBVAR	SOFA	sequence	4	SO	sequence_alteration	translocation_element
SO:0000240	SO:1000183	\N	"" []	SO:0000686	"A chromosomal translocation whereby the chromosomes carrying non-homologous centromeres may be recovered independently. These chromosomes are described as translocation elements. This occurs for some translocations, particularly but not exclusively, reciprocal translocations." [SO:ma]	2928298	\N	\N	sequence	4	SO	chromosome_variation	translocation_element
SO:0002072	SO:0001059	\N	"" []	SO:0000686	"A chromosomal translocation whereby the chromosomes carrying non-homologous centromeres may be recovered independently. These chromosomes are described as translocation elements. This occurs for some translocations, particularly but not exclusively, reciprocal translocations." [SO:ma]	4001637	SOFA	\N	sequence	5	SO	sequence_comparison	translocation_element
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0000686	"A chromosomal translocation whereby the chromosomes carrying non-homologous centromeres may be recovered independently. These chromosomes are described as translocation elements. This occurs for some translocations, particularly but not exclusively, reciprocal translocations." [SO:ma]	4001638	\N	\N	sequence	5	SO	variant_collection	translocation_element
SO:0001524	SO:0000240	\N	"" []	SO:0000686	"A chromosomal translocation whereby the chromosomes carrying non-homologous centromeres may be recovered independently. These chromosomes are described as translocation elements. This occurs for some translocations, particularly but not exclusively, reciprocal translocations." [SO:ma]	4001639	\N	\N	sequence	5	SO	chromosomally_aberrant_genome	translocation_element
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000686	"A chromosomal translocation whereby the chromosomes carrying non-homologous centromeres may be recovered independently. These chromosomes are described as translocation elements. This occurs for some translocations, particularly but not exclusively, reciprocal translocations." [SO:ma]	4966151	\N	SOFA	sequence	6	SO	sequence_feature	translocation_element
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000686	"A chromosomal translocation whereby the chromosomes carrying non-homologous centromeres may be recovered independently. These chromosomes are described as translocation elements. This occurs for some translocations, particularly but not exclusively, reciprocal translocations." [SO:ma]	4966152	\N	\N	sequence	6	SO	sequence_collection	translocation_element
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0000686	"A chromosomal translocation whereby the chromosomes carrying non-homologous centromeres may be recovered independently. These chromosomes are described as translocation elements. This occurs for some translocations, particularly but not exclusively, reciprocal translocations." [SO:ma]	4966153	\N	\N	sequence	6	SO	variant_genome	translocation_element
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0000686	"A chromosomal translocation whereby the chromosomes carrying non-homologous centromeres may be recovered independently. These chromosomes are described as translocation elements. This occurs for some translocations, particularly but not exclusively, reciprocal translocations." [SO:ma]	5741046	\N	\N	sequence	7	SO	genome	translocation_element
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000686	"A chromosomal translocation whereby the chromosomes carrying non-homologous centromeres may be recovered independently. These chromosomes are described as translocation elements. This occurs for some translocations, particularly but not exclusively, reciprocal translocations." [SO:ma]	6310969	\N	\N	sequence	8	SO	sequence_collection	translocation_element
SO:0000687	\N	SOFA	"The space between two bases in a sequence which marks the position where a deletion has occurred." [SO:ke]	SO:0000687	"The space between two bases in a sequence which marks the position where a deletion has occurred." [SO:ke]	45620	\N	SOFA	sequence	0	SO	deletion_junction	deletion_junction
SO:0000699	SO:0000687	SOFA	"A sequence_feature with an extent of zero." [SO:ke]	SO:0000687	"The space between two bases in a sequence which marks the position where a deletion has occurred." [SO:ke]	490284	SOFA	SOFA	sequence	1	SO	junction	deletion_junction
SO:0000110	SO:0000699	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000687	"The space between two bases in a sequence which marks the position where a deletion has occurred." [SO:ke]	1072770	SOFA	SOFA	sequence	2	SO	sequence_feature	deletion_junction
SO:0000688	\N	SOFA	"A set of subregions selected from sequence contigs which when concatenated form a nonredundant linear sequence." [SO:ls]	SO:0000688	"A set of subregions selected from sequence contigs which when concatenated form a nonredundant linear sequence." [SO:ls]	45621	\N	SOFA	sequence	0	SO	golden_path	golden_path
SO:0000353	SO:0000688	SOFA	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0000688	"A set of subregions selected from sequence contigs which when concatenated form a nonredundant linear sequence." [SO:ls]	490285	SOFA	SOFA	sequence	1	SO	sequence_assembly	golden_path
SO:0001248	SO:0000353	SOFA	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0000688	"A set of subregions selected from sequence contigs which when concatenated form a nonredundant linear sequence." [SO:ls]	1072771	SOFA	SOFA	sequence	2	SO	assembly	golden_path
SO:0001410	SO:0001248	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000688	"A set of subregions selected from sequence contigs which when concatenated form a nonredundant linear sequence." [SO:ls]	1903824	SOFA	SOFA	sequence	3	SO	experimental_feature	golden_path
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000688	"A set of subregions selected from sequence contigs which when concatenated form a nonredundant linear sequence." [SO:ls]	2928299	SOFA	SOFA	sequence	4	SO	region	golden_path
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000688	"A set of subregions selected from sequence contigs which when concatenated form a nonredundant linear sequence." [SO:ls]	4001640	SOFA	SOFA	sequence	5	SO	sequence_feature	golden_path
SO:0000689	\N	SOFA	"A match against cDNA sequence." [SO:ke]	SO:0000689	"A match against cDNA sequence." [SO:ke]	45622	\N	SOFA	sequence	0	SO	cDNA_match	cDNA_match
SO:0000102	SO:0000689	SOFA	"A match to an EST or cDNA sequence." [SO:ke]	SO:0000689	"A match against cDNA sequence." [SO:ke]	490286	SOFA	SOFA	sequence	1	SO	expressed_sequence_match	cDNA_match
SO:0000347	SO:0000102	SOFA	"A match against a nucleotide sequence." [SO:ke]	SO:0000689	"A match against cDNA sequence." [SO:ke]	1072772	SOFA	SOFA	sequence	2	SO	nucleotide_match	cDNA_match
SO:0000343	SO:0000347	SOFA	"A region of sequence, aligned to another sequence with some statistical significance, using an algorithm such as BLAST or SIM4." [SO:ke]	SO:0000689	"A match against cDNA sequence." [SO:ke]	1903825	SOFA	SOFA	sequence	3	SO	match	cDNA_match
SO:0001410	SO:0000343	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000689	"A match against cDNA sequence." [SO:ke]	2928300	SOFA	SOFA	sequence	4	SO	experimental_feature	cDNA_match
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000689	"A match against cDNA sequence." [SO:ke]	4001641	SOFA	SOFA	sequence	5	SO	region	cDNA_match
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000689	"A match against cDNA sequence." [SO:ke]	4966154	SOFA	SOFA	sequence	6	SO	sequence_feature	cDNA_match
SO:0000690	\N	\N	"A gene that encodes a polycistronic transcript." [SO:xp]	SO:0000690	"A gene that encodes a polycistronic transcript." [SO:xp]	45623	\N	\N	sequence	0	SO	gene_with_polycistronic_transcript	gene_with_polycistronic_transcript
SO:0000704	SO:0000690	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000690	"A gene that encodes a polycistronic transcript." [SO:xp]	490287	\N	SOFA	sequence	1	SO	gene	gene_with_polycistronic_transcript
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000690	"A gene that encodes a polycistronic transcript." [SO:xp]	1072773	SOFA	SOFA	sequence	2	SO	biological_region	gene_with_polycistronic_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000690	"A gene that encodes a polycistronic transcript." [SO:xp]	1903826	SOFA	SOFA	sequence	3	SO	region	gene_with_polycistronic_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000690	"A gene that encodes a polycistronic transcript." [SO:xp]	2928301	SOFA	SOFA	sequence	4	SO	sequence_feature	gene_with_polycistronic_transcript
SO:0000691	\N	biosapiens	"The initiator methionine that has been cleaved from a mature polypeptide sequence." [EBIBS:GAR]	SO:0000691	"The initiator methionine that has been cleaved from a mature polypeptide sequence." [EBIBS:GAR]	45624	\N	biosapiens	sequence	0	SO	cleaved_initiator_methionine	cleaved_initiator_methionine
SO:0100011	SO:0000691	biosapiens	"The cleaved_peptide_region is the region of a peptide sequence that is cleaved during maturation." [EBIBS:GAR]	SO:0000691	"The initiator methionine that has been cleaved from a mature polypeptide sequence." [EBIBS:GAR]	490288	biosapiens	biosapiens,SOFA	sequence	1	SO	cleaved_peptide_region	cleaved_initiator_methionine
SO:0000839	SO:0100011	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0000691	"The initiator methionine that has been cleaved from a mature polypeptide sequence." [EBIBS:GAR]	1072774	biosapiens,SOFA	biosapiens,SOFA	sequence	2	SO	polypeptide_region	cleaved_initiator_methionine
SO:0001063	SO:0100011	biosapiens	"An immature_peptide_region is the extent of the peptide after it has been translated and before any processing occurs." [EBIBS:GAR]	SO:0000691	"The initiator methionine that has been cleaved from a mature polypeptide sequence." [EBIBS:GAR]	1072775	biosapiens,SOFA	biosapiens,SOFA	sequence	2	SO	immature_peptide_region	cleaved_initiator_methionine
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0000691	"The initiator methionine that has been cleaved from a mature polypeptide sequence." [EBIBS:GAR]	2928304	biosapiens,SOFA	SOFA	sequence	4	SO	polypeptide	cleaved_initiator_methionine
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000691	"The initiator methionine that has been cleaved from a mature polypeptide sequence." [EBIBS:GAR]	2928305	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	cleaved_initiator_methionine
SO:0000839	SO:0001063	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0000691	"The initiator methionine that has been cleaved from a mature polypeptide sequence." [EBIBS:GAR]	1903829	biosapiens,SOFA	biosapiens,SOFA	sequence	3	SO	polypeptide_region	cleaved_initiator_methionine
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000691	"The initiator methionine that has been cleaved from a mature polypeptide sequence." [EBIBS:GAR]	3173888	SOFA	SOFA	sequence	5	SO	biological_region	cleaved_initiator_methionine
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000691	"The initiator methionine that has been cleaved from a mature polypeptide sequence." [EBIBS:GAR]	4385746	SOFA	SOFA	sequence	6	SO	region	cleaved_initiator_methionine
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000691	"The initiator methionine that has been cleaved from a mature polypeptide sequence." [EBIBS:GAR]	5180703	SOFA	SOFA	sequence	7	SO	sequence_feature	cleaved_initiator_methionine
SO:0000692	\N	\N	"A gene that encodes a dicistronic transcript." [SO:xp]	SO:0000692	"A gene that encodes a dicistronic transcript." [SO:xp]	45625	\N	\N	sequence	0	SO	gene_with_dicistronic_transcript	gene_with_dicistronic_transcript
SO:0000690	SO:0000692	\N	"A gene that encodes a polycistronic transcript." [SO:xp]	SO:0000692	"A gene that encodes a dicistronic transcript." [SO:xp]	490289	\N	\N	sequence	1	SO	gene_with_polycistronic_transcript	gene_with_dicistronic_transcript
SO:0000704	SO:0000690	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000692	"A gene that encodes a dicistronic transcript." [SO:xp]	1072776	\N	SOFA	sequence	2	SO	gene	gene_with_dicistronic_transcript
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000692	"A gene that encodes a dicistronic transcript." [SO:xp]	1903830	SOFA	SOFA	sequence	3	SO	biological_region	gene_with_dicistronic_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000692	"A gene that encodes a dicistronic transcript." [SO:xp]	2928306	SOFA	SOFA	sequence	4	SO	region	gene_with_dicistronic_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000692	"A gene that encodes a dicistronic transcript." [SO:xp]	4001643	SOFA	SOFA	sequence	5	SO	sequence_feature	gene_with_dicistronic_transcript
SO:0000693	\N	\N	"A gene that encodes an mRNA that is recoded." [SO:xp]	SO:0000693	"A gene that encodes an mRNA that is recoded." [SO:xp]	45626	\N	\N	sequence	0	SO	gene_with_recoded_mRNA	gene_with_recoded_mRNA
SO:0001217	SO:0000693	\N	"" []	SO:0000693	"A gene that encodes an mRNA that is recoded." [SO:xp]	490290	\N	\N	sequence	1	SO	protein_coding_gene	gene_with_recoded_mRNA
SO:0000704	SO:0001217	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000693	"A gene that encodes an mRNA that is recoded." [SO:xp]	1072777	\N	SOFA	sequence	2	SO	gene	gene_with_recoded_mRNA
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000693	"A gene that encodes an mRNA that is recoded." [SO:xp]	1903831	SOFA	SOFA	sequence	3	SO	biological_region	gene_with_recoded_mRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000693	"A gene that encodes an mRNA that is recoded." [SO:xp]	2928307	SOFA	SOFA	sequence	4	SO	region	gene_with_recoded_mRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000693	"A gene that encodes an mRNA that is recoded." [SO:xp]	4001644	SOFA	SOFA	sequence	5	SO	sequence_feature	gene_with_recoded_mRNA
SO:0000694	\N	SOFA	"SNPs are single base pair positions in genomic DNA at which different sequence alternatives exist in normal individuals in some population(s), wherein the least frequent variant has an abundance of 1% or greater." [SO:cb]	SO:0000694	"SNPs are single base pair positions in genomic DNA at which different sequence alternatives exist in normal individuals in some population(s), wherein the least frequent variant has an abundance of 1% or greater." [SO:cb]	45627	\N	SOFA	sequence	0	SO	SNP	SNP
SO:0001483	SO:0000694	SOFA	"SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist." [SO:bm]	SO:0000694	"SNPs are single base pair positions in genomic DNA at which different sequence alternatives exist in normal individuals in some population(s), wherein the least frequent variant has an abundance of 1% or greater." [SO:cb]	490291	SOFA	SOFA	sequence	1	SO	SNV	SNP
SO:1000002	SO:0001483	SOFA	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	SO:0000694	"SNPs are single base pair positions in genomic DNA at which different sequence alternatives exist in normal individuals in some population(s), wherein the least frequent variant has an abundance of 1% or greater." [SO:cb]	1072778	SOFA	SOFA	sequence	2	SO	substitution	SNP
SO:0001059	SO:1000002	SOFA	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0000694	"SNPs are single base pair positions in genomic DNA at which different sequence alternatives exist in normal individuals in some population(s), wherein the least frequent variant has an abundance of 1% or greater." [SO:cb]	1903832	SOFA	SOFA	sequence	3	SO	sequence_alteration	SNP
SO:0001411	SO:1000002	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000694	"SNPs are single base pair positions in genomic DNA at which different sequence alternatives exist in normal individuals in some population(s), wherein the least frequent variant has an abundance of 1% or greater." [SO:cb]	1903833	SOFA	SOFA	sequence	3	SO	biological_region	SNP
SO:0002072	SO:0001059	SOFA	"" []	SO:0000694	"SNPs are single base pair positions in genomic DNA at which different sequence alternatives exist in normal individuals in some population(s), wherein the least frequent variant has an abundance of 1% or greater." [SO:cb]	2928308	SOFA	\N	sequence	4	SO	sequence_comparison	SNP
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000694	"SNPs are single base pair positions in genomic DNA at which different sequence alternatives exist in normal individuals in some population(s), wherein the least frequent variant has an abundance of 1% or greater." [SO:cb]	2928309	SOFA	SOFA	sequence	4	SO	region	SNP
SO:0000110	SO:0002072	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000694	"SNPs are single base pair positions in genomic DNA at which different sequence alternatives exist in normal individuals in some population(s), wherein the least frequent variant has an abundance of 1% or greater." [SO:cb]	4001645	\N	SOFA	sequence	5	SO	sequence_feature	SNP
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000694	"SNPs are single base pair positions in genomic DNA at which different sequence alternatives exist in normal individuals in some population(s), wherein the least frequent variant has an abundance of 1% or greater." [SO:cb]	4001646	SOFA	SOFA	sequence	5	SO	sequence_feature	SNP
SO:0000695	\N	SOFA	"A sequence used in experiment." [SO:ke]	SO:0000695	"A sequence used in experiment." [SO:ke]	45628	\N	SOFA	sequence	0	SO	reagent	reagent
SO:0001409	SO:0000695	SOFA	"A region which is intended for use in an experiment." [SO:cb]	SO:0000695	"A sequence used in experiment." [SO:ke]	490292	SOFA	SOFA	sequence	1	SO	biomaterial_region	reagent
SO:0000001	SO:0001409	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000695	"A sequence used in experiment." [SO:ke]	1072779	SOFA	SOFA	sequence	2	SO	region	reagent
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000695	"A sequence used in experiment." [SO:ke]	1903834	SOFA	SOFA	sequence	3	SO	sequence_feature	reagent
SO:0000696	\N	SOFA	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0000696	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	45629	\N	SOFA	sequence	0	SO	oligo	oligo
SO:0000695	SO:0000696	SOFA	"A sequence used in experiment." [SO:ke]	SO:0000696	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	490293	SOFA	SOFA	sequence	1	SO	reagent	oligo
SO:0001409	SO:0000695	SOFA	"A region which is intended for use in an experiment." [SO:cb]	SO:0000696	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	1072780	SOFA	SOFA	sequence	2	SO	biomaterial_region	oligo
SO:0000001	SO:0001409	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000696	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	1903835	SOFA	SOFA	sequence	3	SO	region	oligo
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000696	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	2928310	SOFA	SOFA	sequence	4	SO	sequence_feature	oligo
SO:0000697	\N	\N	"A gene that encodes a transcript with stop codon readthrough." [SO:xp]	SO:0000697	"A gene that encodes a transcript with stop codon readthrough." [SO:xp]	45630	\N	\N	sequence	0	SO	gene_with_stop_codon_read_through	gene_with_stop_codon_read_through
SO:0000693	SO:0000697	\N	"A gene that encodes an mRNA that is recoded." [SO:xp]	SO:0000697	"A gene that encodes a transcript with stop codon readthrough." [SO:xp]	490294	\N	\N	sequence	1	SO	gene_with_recoded_mRNA	gene_with_stop_codon_read_through
SO:0001217	SO:0000693	\N	"" []	SO:0000697	"A gene that encodes a transcript with stop codon readthrough." [SO:xp]	1072781	\N	\N	sequence	2	SO	protein_coding_gene	gene_with_stop_codon_read_through
SO:0000704	SO:0001217	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000697	"A gene that encodes a transcript with stop codon readthrough." [SO:xp]	1903836	\N	SOFA	sequence	3	SO	gene	gene_with_stop_codon_read_through
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000697	"A gene that encodes a transcript with stop codon readthrough." [SO:xp]	2928311	SOFA	SOFA	sequence	4	SO	biological_region	gene_with_stop_codon_read_through
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000697	"A gene that encodes a transcript with stop codon readthrough." [SO:xp]	4001647	SOFA	SOFA	sequence	5	SO	region	gene_with_stop_codon_read_through
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000697	"A gene that encodes a transcript with stop codon readthrough." [SO:xp]	4966155	SOFA	SOFA	sequence	6	SO	sequence_feature	gene_with_stop_codon_read_through
SO:0000698	\N	\N	"A gene encoding an mRNA that has the stop codon redefined as pyrrolysine." [SO:xp]	SO:0000698	"A gene encoding an mRNA that has the stop codon redefined as pyrrolysine." [SO:xp]	45631	\N	\N	sequence	0	SO	gene_with_stop_codon_redefined_as_pyrrolysine	gene_with_stop_codon_redefined_as_pyrrolysine
SO:0000697	SO:0000698	\N	"A gene that encodes a transcript with stop codon readthrough." [SO:xp]	SO:0000698	"A gene encoding an mRNA that has the stop codon redefined as pyrrolysine." [SO:xp]	490295	\N	\N	sequence	1	SO	gene_with_stop_codon_read_through	gene_with_stop_codon_redefined_as_pyrrolysine
SO:0000693	SO:0000697	\N	"A gene that encodes an mRNA that is recoded." [SO:xp]	SO:0000698	"A gene encoding an mRNA that has the stop codon redefined as pyrrolysine." [SO:xp]	1072782	\N	\N	sequence	2	SO	gene_with_recoded_mRNA	gene_with_stop_codon_redefined_as_pyrrolysine
SO:0001217	SO:0000693	\N	"" []	SO:0000698	"A gene encoding an mRNA that has the stop codon redefined as pyrrolysine." [SO:xp]	1903837	\N	\N	sequence	3	SO	protein_coding_gene	gene_with_stop_codon_redefined_as_pyrrolysine
SO:0000704	SO:0001217	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000698	"A gene encoding an mRNA that has the stop codon redefined as pyrrolysine." [SO:xp]	2928312	\N	SOFA	sequence	4	SO	gene	gene_with_stop_codon_redefined_as_pyrrolysine
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000698	"A gene encoding an mRNA that has the stop codon redefined as pyrrolysine." [SO:xp]	4001648	SOFA	SOFA	sequence	5	SO	biological_region	gene_with_stop_codon_redefined_as_pyrrolysine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000698	"A gene encoding an mRNA that has the stop codon redefined as pyrrolysine." [SO:xp]	4966156	SOFA	SOFA	sequence	6	SO	region	gene_with_stop_codon_redefined_as_pyrrolysine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000698	"A gene encoding an mRNA that has the stop codon redefined as pyrrolysine." [SO:xp]	5741047	SOFA	SOFA	sequence	7	SO	sequence_feature	gene_with_stop_codon_redefined_as_pyrrolysine
SO:0000699	\N	SOFA	"A sequence_feature with an extent of zero." [SO:ke]	SO:0000699	"A sequence_feature with an extent of zero." [SO:ke]	45632	\N	SOFA	sequence	0	SO	junction	junction
SO:0000110	SO:0000699	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000699	"A sequence_feature with an extent of zero." [SO:ke]	490296	SOFA	SOFA	sequence	1	SO	sequence_feature	junction
SO:0000700	\N	SOFA	"A comment about the sequence." [SO:ke]	SO:0000700	"A comment about the sequence." [SO:ke]	45633	\N	SOFA	sequence	0	SO	remark	remark
SO:0001410	SO:0000700	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000700	"A comment about the sequence." [SO:ke]	490297	SOFA	SOFA	sequence	1	SO	experimental_feature	remark
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000700	"A comment about the sequence." [SO:ke]	1072783	SOFA	SOFA	sequence	2	SO	region	remark
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000700	"A comment about the sequence." [SO:ke]	1903838	SOFA	SOFA	sequence	3	SO	sequence_feature	remark
SO:0000701	\N	SOFA	"A region of sequence where the validity of the base calling is questionable." [SO:ke]	SO:0000701	"A region of sequence where the validity of the base calling is questionable." [SO:ke]	45634	\N	SOFA	sequence	0	SO	possible_base_call_error	possible_base_call_error
SO:0000413	SO:0000701	SOFA	"A region where the sequence differs from that of a specified sequence." [SO:ke]	SO:0000701	"A region of sequence where the validity of the base calling is questionable." [SO:ke]	490298	SOFA	SOFA	sequence	1	SO	sequence_difference	possible_base_call_error
SO:0000700	SO:0000413	SOFA	"A comment about the sequence." [SO:ke]	SO:0000701	"A region of sequence where the validity of the base calling is questionable." [SO:ke]	1072784	SOFA	SOFA	sequence	2	SO	remark	possible_base_call_error
SO:0001410	SO:0000700	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000701	"A region of sequence where the validity of the base calling is questionable." [SO:ke]	1903839	SOFA	SOFA	sequence	3	SO	experimental_feature	possible_base_call_error
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000701	"A region of sequence where the validity of the base calling is questionable." [SO:ke]	2928313	SOFA	SOFA	sequence	4	SO	region	possible_base_call_error
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000701	"A region of sequence where the validity of the base calling is questionable." [SO:ke]	4001649	SOFA	SOFA	sequence	5	SO	sequence_feature	possible_base_call_error
SO:0000702	\N	SOFA	"A region of sequence where there may have been an error in the assembly." [SO:ke]	SO:0000702	"A region of sequence where there may have been an error in the assembly." [SO:ke]	45635	\N	SOFA	sequence	0	SO	possible_assembly_error	possible_assembly_error
SO:0000413	SO:0000702	SOFA	"A region where the sequence differs from that of a specified sequence." [SO:ke]	SO:0000702	"A region of sequence where there may have been an error in the assembly." [SO:ke]	490299	SOFA	SOFA	sequence	1	SO	sequence_difference	possible_assembly_error
SO:0000700	SO:0000413	SOFA	"A comment about the sequence." [SO:ke]	SO:0000702	"A region of sequence where there may have been an error in the assembly." [SO:ke]	1072785	SOFA	SOFA	sequence	2	SO	remark	possible_assembly_error
SO:0001410	SO:0000700	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000702	"A region of sequence where there may have been an error in the assembly." [SO:ke]	1903840	SOFA	SOFA	sequence	3	SO	experimental_feature	possible_assembly_error
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000702	"A region of sequence where there may have been an error in the assembly." [SO:ke]	2928314	SOFA	SOFA	sequence	4	SO	region	possible_assembly_error
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000702	"A region of sequence where there may have been an error in the assembly." [SO:ke]	4001650	SOFA	SOFA	sequence	5	SO	sequence_feature	possible_assembly_error
SO:0000703	\N	SOFA	"A region of sequence implicated in an experimental result." [SO:ke]	SO:0000703	"A region of sequence implicated in an experimental result." [SO:ke]	45636	\N	SOFA	sequence	0	SO	experimental_result_region	experimental_result_region
SO:0000700	SO:0000703	SOFA	"A comment about the sequence." [SO:ke]	SO:0000703	"A region of sequence implicated in an experimental result." [SO:ke]	490300	SOFA	SOFA	sequence	1	SO	remark	experimental_result_region
SO:0001410	SO:0000700	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000703	"A region of sequence implicated in an experimental result." [SO:ke]	1072786	SOFA	SOFA	sequence	2	SO	experimental_feature	experimental_result_region
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000703	"A region of sequence implicated in an experimental result." [SO:ke]	1903841	SOFA	SOFA	sequence	3	SO	region	experimental_result_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000703	"A region of sequence implicated in an experimental result." [SO:ke]	2928315	SOFA	SOFA	sequence	4	SO	sequence_feature	experimental_result_region
SO:0000704	\N	SOFA	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000704	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	45637	\N	SOFA	sequence	0	SO	gene	gene
BFO:0000040	\N	SOFA	"A material entity is an entity that exists in full during the length of time of its existence, persists through this time while maintaining its identity and has no temporal parts. For example a heart, a human, a fly, a microarray." []	SO:0000704	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	193889	\N	\N	sequence	0	SO	material entity	gene
SO:0001411	SO:0000704	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000704	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	490301	SOFA	SOFA	sequence	1	SO	biological_region	gene
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000704	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	1072787	SOFA	SOFA	sequence	2	SO	region	gene
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000704	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	1903842	SOFA	SOFA	sequence	3	SO	sequence_feature	gene
SO:0000705	\N	SOFA	"Two or more adjacent copies of a region (of length greater than 1)." [SO:ke]	SO:0000705	"Two or more adjacent copies of a region (of length greater than 1)." [SO:ke]	45638	\N	SOFA	sequence	0	SO	tandem_repeat	tandem_repeat
SO:0000657	SO:0000705	SOFA	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000705	"Two or more adjacent copies of a region (of length greater than 1)." [SO:ke]	490302	SOFA	SOFA	sequence	1	SO	repeat_region	tandem_repeat
SO:0001411	SO:0000657	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000705	"Two or more adjacent copies of a region (of length greater than 1)." [SO:ke]	1072788	SOFA	SOFA	sequence	2	SO	biological_region	tandem_repeat
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000705	"Two or more adjacent copies of a region (of length greater than 1)." [SO:ke]	1903843	SOFA	SOFA	sequence	3	SO	region	tandem_repeat
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000705	"Two or more adjacent copies of a region (of length greater than 1)." [SO:ke]	2928316	SOFA	SOFA	sequence	4	SO	sequence_feature	tandem_repeat
SO:0000706	\N	SOFA	"The 3' splice site of the acceptor primary transcript." [SO:ke]	SO:0000706	"The 3' splice site of the acceptor primary transcript." [SO:ke]	45639	\N	SOFA	sequence	0	SO	trans_splice_acceptor_site	trans_splice_acceptor_site
SO:0001420	SO:0000706	SOFA	"Primary transcript region bordering trans-splice junction." [SO:ke]	SO:0000706	"The 3' splice site of the acceptor primary transcript." [SO:ke]	490303	SOFA	SOFA	sequence	1	SO	trans_splice_site	trans_splice_acceptor_site
SO:0000162	SO:0001420	SOFA	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	SO:0000706	"The 3' splice site of the acceptor primary transcript." [SO:ke]	1072789	SOFA	SOFA	sequence	2	SO	splice_site	trans_splice_acceptor_site
SO:0000835	SO:0000162	SOFA	"A part of a primary transcript." [SO:ke]	SO:0000706	"The 3' splice site of the acceptor primary transcript." [SO:ke]	1903844	SOFA	SOFA	sequence	3	SO	primary_transcript_region	trans_splice_acceptor_site
SO:0000185	SO:0000835	SOFA	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000706	"The 3' splice site of the acceptor primary transcript." [SO:ke]	2928317	SOFA	SOFA	sequence	4	SO	primary_transcript	trans_splice_acceptor_site
SO:0000833	SO:0000835	SOFA	"A region of a transcript." [SO:ke]	SO:0000706	"The 3' splice site of the acceptor primary transcript." [SO:ke]	2928318	SOFA	SOFA	sequence	4	SO	transcript_region	trans_splice_acceptor_site
SO:0000673	SO:0000185	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000706	"The 3' splice site of the acceptor primary transcript." [SO:ke]	4001651	SOFA	SOFA	sequence	5	SO	transcript	trans_splice_acceptor_site
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000706	"The 3' splice site of the acceptor primary transcript." [SO:ke]	4001652	SOFA	SOFA	sequence	5	SO	transcript	trans_splice_acceptor_site
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000706	"The 3' splice site of the acceptor primary transcript." [SO:ke]	4001653	SOFA	SOFA	sequence	5	SO	biological_region	trans_splice_acceptor_site
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000706	"The 3' splice site of the acceptor primary transcript." [SO:ke]	4966157	SOFA	SOFA	sequence	6	SO	gene_member_region	trans_splice_acceptor_site
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000706	"The 3' splice site of the acceptor primary transcript." [SO:ke]	6310970	SOFA	SOFA	sequence	8	SO	region	trans_splice_acceptor_site
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000706	"The 3' splice site of the acceptor primary transcript." [SO:ke]	5741048	SOFA	SOFA	sequence	7	SO	biological_region	trans_splice_acceptor_site
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000706	"The 3' splice site of the acceptor primary transcript." [SO:ke]	6550266	SOFA	SOFA	sequence	9	SO	sequence_feature	trans_splice_acceptor_site
SO:0000707	\N	\N	"The 5' five prime splice site region of the donor RNA." [SO:ke]	SO:0000707	"The 5' five prime splice site region of the donor RNA." [SO:ke]	45640	\N	\N	sequence	0	SO	trans_splice_donor_site	trans_splice_donor_site
SO:0001420	SO:0000707	\N	"Primary transcript region bordering trans-splice junction." [SO:ke]	SO:0000707	"The 5' five prime splice site region of the donor RNA." [SO:ke]	490304	\N	SOFA	sequence	1	SO	trans_splice_site	trans_splice_donor_site
SO:0000162	SO:0001420	\N	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	SO:0000707	"The 5' five prime splice site region of the donor RNA." [SO:ke]	1072790	SOFA	SOFA	sequence	2	SO	splice_site	trans_splice_donor_site
SO:0000835	SO:0000162	\N	"A part of a primary transcript." [SO:ke]	SO:0000707	"The 5' five prime splice site region of the donor RNA." [SO:ke]	1903845	SOFA	SOFA	sequence	3	SO	primary_transcript_region	trans_splice_donor_site
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000707	"The 5' five prime splice site region of the donor RNA." [SO:ke]	2928319	SOFA	SOFA	sequence	4	SO	primary_transcript	trans_splice_donor_site
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0000707	"The 5' five prime splice site region of the donor RNA." [SO:ke]	2928320	SOFA	SOFA	sequence	4	SO	transcript_region	trans_splice_donor_site
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000707	"The 5' five prime splice site region of the donor RNA." [SO:ke]	4001654	SOFA	SOFA	sequence	5	SO	transcript	trans_splice_donor_site
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000707	"The 5' five prime splice site region of the donor RNA." [SO:ke]	4001655	SOFA	SOFA	sequence	5	SO	transcript	trans_splice_donor_site
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000707	"The 5' five prime splice site region of the donor RNA." [SO:ke]	4001656	SOFA	SOFA	sequence	5	SO	biological_region	trans_splice_donor_site
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000707	"The 5' five prime splice site region of the donor RNA." [SO:ke]	4966159	SOFA	SOFA	sequence	6	SO	gene_member_region	trans_splice_donor_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000707	"The 5' five prime splice site region of the donor RNA." [SO:ke]	6310971	SOFA	SOFA	sequence	8	SO	region	trans_splice_donor_site
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000707	"The 5' five prime splice site region of the donor RNA." [SO:ke]	5741050	SOFA	SOFA	sequence	7	SO	biological_region	trans_splice_donor_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000707	"The 5' five prime splice site region of the donor RNA." [SO:ke]	6550267	SOFA	SOFA	sequence	9	SO	sequence_feature	trans_splice_donor_site
SO:0000708	\N	\N	"A trans_splicing_acceptor_site which appends the 22nt SL1 RNA leader sequence to the 5' end of most mRNAs." [SO:nlw]	SO:0000708	"A trans_splicing_acceptor_site which appends the 22nt SL1 RNA leader sequence to the 5' end of most mRNAs." [SO:nlw]	45641	\N	\N	sequence	0	SO	SL1_acceptor_site	SL1_acceptor_site
SO:0000706	SO:0000708	\N	"The 3' splice site of the acceptor primary transcript." [SO:ke]	SO:0000708	"A trans_splicing_acceptor_site which appends the 22nt SL1 RNA leader sequence to the 5' end of most mRNAs." [SO:nlw]	490305	\N	SOFA	sequence	1	SO	trans_splice_acceptor_site	SL1_acceptor_site
SO:0001420	SO:0000706	\N	"Primary transcript region bordering trans-splice junction." [SO:ke]	SO:0000708	"A trans_splicing_acceptor_site which appends the 22nt SL1 RNA leader sequence to the 5' end of most mRNAs." [SO:nlw]	1072791	SOFA	SOFA	sequence	2	SO	trans_splice_site	SL1_acceptor_site
SO:0000162	SO:0001420	\N	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	SO:0000708	"A trans_splicing_acceptor_site which appends the 22nt SL1 RNA leader sequence to the 5' end of most mRNAs." [SO:nlw]	1903846	SOFA	SOFA	sequence	3	SO	splice_site	SL1_acceptor_site
SO:0000835	SO:0000162	\N	"A part of a primary transcript." [SO:ke]	SO:0000708	"A trans_splicing_acceptor_site which appends the 22nt SL1 RNA leader sequence to the 5' end of most mRNAs." [SO:nlw]	2928321	SOFA	SOFA	sequence	4	SO	primary_transcript_region	SL1_acceptor_site
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000708	"A trans_splicing_acceptor_site which appends the 22nt SL1 RNA leader sequence to the 5' end of most mRNAs." [SO:nlw]	4001657	SOFA	SOFA	sequence	5	SO	primary_transcript	SL1_acceptor_site
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0000708	"A trans_splicing_acceptor_site which appends the 22nt SL1 RNA leader sequence to the 5' end of most mRNAs." [SO:nlw]	4001658	SOFA	SOFA	sequence	5	SO	transcript_region	SL1_acceptor_site
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000708	"A trans_splicing_acceptor_site which appends the 22nt SL1 RNA leader sequence to the 5' end of most mRNAs." [SO:nlw]	4966161	SOFA	SOFA	sequence	6	SO	transcript	SL1_acceptor_site
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000708	"A trans_splicing_acceptor_site which appends the 22nt SL1 RNA leader sequence to the 5' end of most mRNAs." [SO:nlw]	4966162	SOFA	SOFA	sequence	6	SO	transcript	SL1_acceptor_site
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000708	"A trans_splicing_acceptor_site which appends the 22nt SL1 RNA leader sequence to the 5' end of most mRNAs." [SO:nlw]	4966163	SOFA	SOFA	sequence	6	SO	biological_region	SL1_acceptor_site
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000708	"A trans_splicing_acceptor_site which appends the 22nt SL1 RNA leader sequence to the 5' end of most mRNAs." [SO:nlw]	5741052	SOFA	SOFA	sequence	7	SO	gene_member_region	SL1_acceptor_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000708	"A trans_splicing_acceptor_site which appends the 22nt SL1 RNA leader sequence to the 5' end of most mRNAs." [SO:nlw]	6699321	SOFA	SOFA	sequence	9	SO	region	SL1_acceptor_site
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000708	"A trans_splicing_acceptor_site which appends the 22nt SL1 RNA leader sequence to the 5' end of most mRNAs." [SO:nlw]	6310972	SOFA	SOFA	sequence	8	SO	biological_region	SL1_acceptor_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000708	"A trans_splicing_acceptor_site which appends the 22nt SL1 RNA leader sequence to the 5' end of most mRNAs." [SO:nlw]	6888937	SOFA	SOFA	sequence	10	SO	sequence_feature	SL1_acceptor_site
SO:0000709	\N	\N	"A trans_splicing_acceptor_site which appends the 22nt SL2 RNA leader sequence to the 5' end of mRNAs. SL2 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	SO:0000709	"A trans_splicing_acceptor_site which appends the 22nt SL2 RNA leader sequence to the 5' end of mRNAs. SL2 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	45642	\N	\N	sequence	0	SO	SL2_acceptor_site	SL2_acceptor_site
SO:0000706	SO:0000709	\N	"The 3' splice site of the acceptor primary transcript." [SO:ke]	SO:0000709	"A trans_splicing_acceptor_site which appends the 22nt SL2 RNA leader sequence to the 5' end of mRNAs. SL2 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	490306	\N	SOFA	sequence	1	SO	trans_splice_acceptor_site	SL2_acceptor_site
SO:0001420	SO:0000706	\N	"Primary transcript region bordering trans-splice junction." [SO:ke]	SO:0000709	"A trans_splicing_acceptor_site which appends the 22nt SL2 RNA leader sequence to the 5' end of mRNAs. SL2 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	1072792	SOFA	SOFA	sequence	2	SO	trans_splice_site	SL2_acceptor_site
SO:0000162	SO:0001420	\N	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	SO:0000709	"A trans_splicing_acceptor_site which appends the 22nt SL2 RNA leader sequence to the 5' end of mRNAs. SL2 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	1903847	SOFA	SOFA	sequence	3	SO	splice_site	SL2_acceptor_site
SO:0000835	SO:0000162	\N	"A part of a primary transcript." [SO:ke]	SO:0000709	"A trans_splicing_acceptor_site which appends the 22nt SL2 RNA leader sequence to the 5' end of mRNAs. SL2 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	2928322	SOFA	SOFA	sequence	4	SO	primary_transcript_region	SL2_acceptor_site
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000709	"A trans_splicing_acceptor_site which appends the 22nt SL2 RNA leader sequence to the 5' end of mRNAs. SL2 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4001659	SOFA	SOFA	sequence	5	SO	primary_transcript	SL2_acceptor_site
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0000709	"A trans_splicing_acceptor_site which appends the 22nt SL2 RNA leader sequence to the 5' end of mRNAs. SL2 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4001660	SOFA	SOFA	sequence	5	SO	transcript_region	SL2_acceptor_site
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000709	"A trans_splicing_acceptor_site which appends the 22nt SL2 RNA leader sequence to the 5' end of mRNAs. SL2 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4966164	SOFA	SOFA	sequence	6	SO	transcript	SL2_acceptor_site
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000709	"A trans_splicing_acceptor_site which appends the 22nt SL2 RNA leader sequence to the 5' end of mRNAs. SL2 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4966165	SOFA	SOFA	sequence	6	SO	transcript	SL2_acceptor_site
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000709	"A trans_splicing_acceptor_site which appends the 22nt SL2 RNA leader sequence to the 5' end of mRNAs. SL2 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4966166	SOFA	SOFA	sequence	6	SO	biological_region	SL2_acceptor_site
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000709	"A trans_splicing_acceptor_site which appends the 22nt SL2 RNA leader sequence to the 5' end of mRNAs. SL2 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	5741054	SOFA	SOFA	sequence	7	SO	gene_member_region	SL2_acceptor_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000709	"A trans_splicing_acceptor_site which appends the 22nt SL2 RNA leader sequence to the 5' end of mRNAs. SL2 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6699322	SOFA	SOFA	sequence	9	SO	region	SL2_acceptor_site
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000709	"A trans_splicing_acceptor_site which appends the 22nt SL2 RNA leader sequence to the 5' end of mRNAs. SL2 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6310974	SOFA	SOFA	sequence	8	SO	biological_region	SL2_acceptor_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000709	"A trans_splicing_acceptor_site which appends the 22nt SL2 RNA leader sequence to the 5' end of mRNAs. SL2 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6888938	SOFA	SOFA	sequence	10	SO	sequence_feature	SL2_acceptor_site
SO:0000710	\N	\N	"A gene encoding an mRNA that has the stop codon redefined as selenocysteine." [SO:xp]	SO:0000710	"A gene encoding an mRNA that has the stop codon redefined as selenocysteine." [SO:xp]	45643	\N	\N	sequence	0	SO	gene_with_stop_codon_redefined_as_selenocysteine	gene_with_stop_codon_redefined_as_selenocysteine
SO:0000697	SO:0000710	\N	"A gene that encodes a transcript with stop codon readthrough." [SO:xp]	SO:0000710	"A gene encoding an mRNA that has the stop codon redefined as selenocysteine." [SO:xp]	490307	\N	\N	sequence	1	SO	gene_with_stop_codon_read_through	gene_with_stop_codon_redefined_as_selenocysteine
SO:0000693	SO:0000697	\N	"A gene that encodes an mRNA that is recoded." [SO:xp]	SO:0000710	"A gene encoding an mRNA that has the stop codon redefined as selenocysteine." [SO:xp]	1072793	\N	\N	sequence	2	SO	gene_with_recoded_mRNA	gene_with_stop_codon_redefined_as_selenocysteine
SO:0001217	SO:0000693	\N	"" []	SO:0000710	"A gene encoding an mRNA that has the stop codon redefined as selenocysteine." [SO:xp]	1903848	\N	\N	sequence	3	SO	protein_coding_gene	gene_with_stop_codon_redefined_as_selenocysteine
SO:0000704	SO:0001217	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000710	"A gene encoding an mRNA that has the stop codon redefined as selenocysteine." [SO:xp]	2928323	\N	SOFA	sequence	4	SO	gene	gene_with_stop_codon_redefined_as_selenocysteine
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000710	"A gene encoding an mRNA that has the stop codon redefined as selenocysteine." [SO:xp]	4001661	SOFA	SOFA	sequence	5	SO	biological_region	gene_with_stop_codon_redefined_as_selenocysteine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000710	"A gene encoding an mRNA that has the stop codon redefined as selenocysteine." [SO:xp]	4966167	SOFA	SOFA	sequence	6	SO	region	gene_with_stop_codon_redefined_as_selenocysteine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000710	"A gene encoding an mRNA that has the stop codon redefined as selenocysteine." [SO:xp]	5741056	SOFA	SOFA	sequence	7	SO	sequence_feature	gene_with_stop_codon_redefined_as_selenocysteine
SO:0000711	\N	\N	"A gene with mRNA recoded by translational bypass." [SO:xp]	SO:0000711	"A gene with mRNA recoded by translational bypass." [SO:xp]	45644	\N	\N	sequence	0	SO	gene_with_mRNA_recoded_by_translational_bypass	gene_with_mRNA_recoded_by_translational_bypass
SO:0000693	SO:0000711	\N	"A gene that encodes an mRNA that is recoded." [SO:xp]	SO:0000711	"A gene with mRNA recoded by translational bypass." [SO:xp]	490308	\N	\N	sequence	1	SO	gene_with_recoded_mRNA	gene_with_mRNA_recoded_by_translational_bypass
SO:0001217	SO:0000693	\N	"" []	SO:0000711	"A gene with mRNA recoded by translational bypass." [SO:xp]	1072794	\N	\N	sequence	2	SO	protein_coding_gene	gene_with_mRNA_recoded_by_translational_bypass
SO:0000704	SO:0001217	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000711	"A gene with mRNA recoded by translational bypass." [SO:xp]	1903849	\N	SOFA	sequence	3	SO	gene	gene_with_mRNA_recoded_by_translational_bypass
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000711	"A gene with mRNA recoded by translational bypass." [SO:xp]	2928324	SOFA	SOFA	sequence	4	SO	biological_region	gene_with_mRNA_recoded_by_translational_bypass
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000711	"A gene with mRNA recoded by translational bypass." [SO:xp]	4001662	SOFA	SOFA	sequence	5	SO	region	gene_with_mRNA_recoded_by_translational_bypass
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000711	"A gene with mRNA recoded by translational bypass." [SO:xp]	4966168	SOFA	SOFA	sequence	6	SO	sequence_feature	gene_with_mRNA_recoded_by_translational_bypass
SO:0000712	\N	\N	"A gene encoding a transcript that has a translational frameshift." [SO:xp]	SO:0000712	"A gene encoding a transcript that has a translational frameshift." [SO:xp]	45645	\N	\N	sequence	0	SO	gene_with_transcript_with_translational_frameshift	gene_with_transcript_with_translational_frameshift
SO:0000693	SO:0000712	\N	"A gene that encodes an mRNA that is recoded." [SO:xp]	SO:0000712	"A gene encoding a transcript that has a translational frameshift." [SO:xp]	490309	\N	\N	sequence	1	SO	gene_with_recoded_mRNA	gene_with_transcript_with_translational_frameshift
SO:0001217	SO:0000693	\N	"" []	SO:0000712	"A gene encoding a transcript that has a translational frameshift." [SO:xp]	1072795	\N	\N	sequence	2	SO	protein_coding_gene	gene_with_transcript_with_translational_frameshift
SO:0000704	SO:0001217	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000712	"A gene encoding a transcript that has a translational frameshift." [SO:xp]	1903850	\N	SOFA	sequence	3	SO	gene	gene_with_transcript_with_translational_frameshift
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000712	"A gene encoding a transcript that has a translational frameshift." [SO:xp]	2928325	SOFA	SOFA	sequence	4	SO	biological_region	gene_with_transcript_with_translational_frameshift
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000712	"A gene encoding a transcript that has a translational frameshift." [SO:xp]	4001663	SOFA	SOFA	sequence	5	SO	region	gene_with_transcript_with_translational_frameshift
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000712	"A gene encoding a transcript that has a translational frameshift." [SO:xp]	4966169	SOFA	SOFA	sequence	6	SO	sequence_feature	gene_with_transcript_with_translational_frameshift
SO:0000713	\N	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0000713	"A motif that is active in the DNA form of the sequence." [SO:ke]	45646	\N	\N	sequence	0	SO	DNA_motif	DNA_motif
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0000713	"A motif that is active in the DNA form of the sequence." [SO:ke]	490310	\N	SOFA	sequence	1	SO	nucleotide_motif	DNA_motif
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0000713	"A motif that is active in the DNA form of the sequence." [SO:ke]	1072796	SOFA	SOFA	sequence	2	SO	sequence_motif	DNA_motif
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000713	"A motif that is active in the DNA form of the sequence." [SO:ke]	1903851	SOFA	SOFA	sequence	3	SO	biological_region	DNA_motif
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000713	"A motif that is active in the DNA form of the sequence." [SO:ke]	2928326	SOFA	SOFA	sequence	4	SO	region	DNA_motif
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000713	"A motif that is active in the DNA form of the sequence." [SO:ke]	4001664	SOFA	SOFA	sequence	5	SO	sequence_feature	DNA_motif
SO:0000714	\N	SOFA	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0000714	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	45647	\N	SOFA	sequence	0	SO	nucleotide_motif	nucleotide_motif
SO:0001683	SO:0000714	SOFA	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0000714	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	490311	SOFA	SOFA	sequence	1	SO	sequence_motif	nucleotide_motif
SO:0001411	SO:0001683	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000714	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	1072797	SOFA	SOFA	sequence	2	SO	biological_region	nucleotide_motif
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000714	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	1903852	SOFA	SOFA	sequence	3	SO	region	nucleotide_motif
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000714	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	2928327	SOFA	SOFA	sequence	4	SO	sequence_feature	nucleotide_motif
SO:0000715	\N	SOFA	"A motif that is active in RNA sequence." [SO:ke]	SO:0000715	"A motif that is active in RNA sequence." [SO:ke]	45648	\N	SOFA	sequence	0	SO	RNA_motif	RNA_motif
SO:0000714	SO:0000715	SOFA	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0000715	"A motif that is active in RNA sequence." [SO:ke]	490312	SOFA	SOFA	sequence	1	SO	nucleotide_motif	RNA_motif
SO:0001683	SO:0000714	SOFA	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0000715	"A motif that is active in RNA sequence." [SO:ke]	1072798	SOFA	SOFA	sequence	2	SO	sequence_motif	RNA_motif
SO:0001411	SO:0001683	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000715	"A motif that is active in RNA sequence." [SO:ke]	1903853	SOFA	SOFA	sequence	3	SO	biological_region	RNA_motif
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000715	"A motif that is active in RNA sequence." [SO:ke]	2928328	SOFA	SOFA	sequence	4	SO	region	RNA_motif
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000715	"A motif that is active in RNA sequence." [SO:ke]	4001665	SOFA	SOFA	sequence	5	SO	sequence_feature	RNA_motif
SO:0000716	\N	\N	"An mRNA that has the quality dicistronic." [SO:ke]	SO:0000716	"An mRNA that has the quality dicistronic." [SO:ke]	45649	\N	\N	sequence	0	SO	dicistronic_mRNA	dicistronic_mRNA
SO:0000079	SO:0000716	\N	"A transcript that is dicistronic." [SO:ke]	SO:0000716	"An mRNA that has the quality dicistronic." [SO:ke]	490313	\N	\N	sequence	1	SO	dicistronic_transcript	dicistronic_mRNA
SO:0000634	SO:0000716	\N	"An mRNA that encodes multiple proteins from at least two non-overlapping regions." [SO:rd]	SO:0000716	"An mRNA that has the quality dicistronic." [SO:ke]	490314	\N	\N	sequence	1	SO	polycistronic_mRNA	dicistronic_mRNA
SO:0000078	SO:0000079	\N	"A transcript that is polycistronic." [SO:xp]	SO:0000716	"An mRNA that has the quality dicistronic." [SO:ke]	1072799	\N	\N	sequence	2	SO	polycistronic_transcript	dicistronic_mRNA
SO:0000078	SO:0000634	\N	"A transcript that is polycistronic." [SO:xp]	SO:0000716	"An mRNA that has the quality dicistronic." [SO:ke]	1072800	\N	\N	sequence	2	SO	polycistronic_transcript	dicistronic_mRNA
SO:0000234	SO:0000634	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000716	"An mRNA that has the quality dicistronic." [SO:ke]	1072801	\N	SOFA	sequence	2	SO	mRNA	dicistronic_mRNA
SO:0000673	SO:0000078	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000716	"An mRNA that has the quality dicistronic." [SO:ke]	1903854	\N	SOFA	sequence	3	SO	transcript	dicistronic_mRNA
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000716	"An mRNA that has the quality dicistronic." [SO:ke]	1903855	SOFA	SOFA	sequence	3	SO	mature_transcript	dicistronic_mRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000716	"An mRNA that has the quality dicistronic." [SO:ke]	4001667	SOFA	SOFA	sequence	5	SO	gene_member_region	dicistronic_mRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000716	"An mRNA that has the quality dicistronic." [SO:ke]	2928330	SOFA	SOFA	sequence	4	SO	transcript	dicistronic_mRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000716	"An mRNA that has the quality dicistronic." [SO:ke]	4385748	SOFA	SOFA	sequence	6	SO	biological_region	dicistronic_mRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000716	"An mRNA that has the quality dicistronic." [SO:ke]	5407412	SOFA	SOFA	sequence	7	SO	region	dicistronic_mRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000716	"An mRNA that has the quality dicistronic." [SO:ke]	6146635	SOFA	SOFA	sequence	8	SO	sequence_feature	dicistronic_mRNA
SO:0000717	\N	SOFA	"A nucleic acid sequence that when read as sequential triplets, has the potential of encoding a sequential string of amino acids. It need not contain the start or stop codon." [SGD:rb]	SO:0000717	"A nucleic acid sequence that when read as sequential triplets, has the potential of encoding a sequential string of amino acids. It need not contain the start or stop codon." [SGD:rb]	45650	\N	SOFA	sequence	0	SO	reading_frame	reading_frame
SO:0001410	SO:0000717	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000717	"A nucleic acid sequence that when read as sequential triplets, has the potential of encoding a sequential string of amino acids. It need not contain the start or stop codon." [SGD:rb]	490315	SOFA	SOFA	sequence	1	SO	experimental_feature	reading_frame
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000717	"A nucleic acid sequence that when read as sequential triplets, has the potential of encoding a sequential string of amino acids. It need not contain the start or stop codon." [SGD:rb]	1072802	SOFA	SOFA	sequence	2	SO	region	reading_frame
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000717	"A nucleic acid sequence that when read as sequential triplets, has the potential of encoding a sequential string of amino acids. It need not contain the start or stop codon." [SGD:rb]	1903856	SOFA	SOFA	sequence	3	SO	sequence_feature	reading_frame
SO:0000718	\N	\N	"A reading_frame that is interrupted by one or more stop codons; usually identified through inter-genomic sequence comparisons." [SGD:rb]	SO:0000718	"A reading_frame that is interrupted by one or more stop codons; usually identified through inter-genomic sequence comparisons." [SGD:rb]	45651	\N	\N	sequence	0	SO	blocked_reading_frame	blocked_reading_frame
SO:0000717	SO:0000718	\N	"A nucleic acid sequence that when read as sequential triplets, has the potential of encoding a sequential string of amino acids. It need not contain the start or stop codon." [SGD:rb]	SO:0000718	"A reading_frame that is interrupted by one or more stop codons; usually identified through inter-genomic sequence comparisons." [SGD:rb]	490316	\N	SOFA	sequence	1	SO	reading_frame	blocked_reading_frame
SO:0001410	SO:0000717	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000718	"A reading_frame that is interrupted by one or more stop codons; usually identified through inter-genomic sequence comparisons." [SGD:rb]	1072803	SOFA	SOFA	sequence	2	SO	experimental_feature	blocked_reading_frame
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000718	"A reading_frame that is interrupted by one or more stop codons; usually identified through inter-genomic sequence comparisons." [SGD:rb]	1903857	SOFA	SOFA	sequence	3	SO	region	blocked_reading_frame
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000718	"A reading_frame that is interrupted by one or more stop codons; usually identified through inter-genomic sequence comparisons." [SGD:rb]	2928331	SOFA	SOFA	sequence	4	SO	sequence_feature	blocked_reading_frame
SO:0000719	\N	SOFA	"An ordered and oriented set of scaffolds based on somewhat weaker sets of inferential evidence such as one set of mate pair reads together with supporting evidence from ESTs or location of markers from SNP or microsatellite maps, or cytogenetic localization of contained markers." [FB:WG]	SO:0000719	"An ordered and oriented set of scaffolds based on somewhat weaker sets of inferential evidence such as one set of mate pair reads together with supporting evidence from ESTs or location of markers from SNP or microsatellite maps, or cytogenetic localization of contained markers." [FB:WG]	45652	\N	SOFA	sequence	0	SO	ultracontig	ultracontig
SO:0001876	SO:0000719	SOFA	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0000719	"An ordered and oriented set of scaffolds based on somewhat weaker sets of inferential evidence such as one set of mate pair reads together with supporting evidence from ESTs or location of markers from SNP or microsatellite maps, or cytogenetic localization of contained markers." [FB:WG]	490317	SOFA	\N	sequence	1	SO	partial_genomic_sequence_assembly	ultracontig
SO:0000353	SO:0001876	SOFA	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0000719	"An ordered and oriented set of scaffolds based on somewhat weaker sets of inferential evidence such as one set of mate pair reads together with supporting evidence from ESTs or location of markers from SNP or microsatellite maps, or cytogenetic localization of contained markers." [FB:WG]	1072804	\N	SOFA	sequence	2	SO	sequence_assembly	ultracontig
SO:0001248	SO:0000353	SOFA	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0000719	"An ordered and oriented set of scaffolds based on somewhat weaker sets of inferential evidence such as one set of mate pair reads together with supporting evidence from ESTs or location of markers from SNP or microsatellite maps, or cytogenetic localization of contained markers." [FB:WG]	1903858	SOFA	SOFA	sequence	3	SO	assembly	ultracontig
SO:0001410	SO:0001248	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000719	"An ordered and oriented set of scaffolds based on somewhat weaker sets of inferential evidence such as one set of mate pair reads together with supporting evidence from ESTs or location of markers from SNP or microsatellite maps, or cytogenetic localization of contained markers." [FB:WG]	2928332	SOFA	SOFA	sequence	4	SO	experimental_feature	ultracontig
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000719	"An ordered and oriented set of scaffolds based on somewhat weaker sets of inferential evidence such as one set of mate pair reads together with supporting evidence from ESTs or location of markers from SNP or microsatellite maps, or cytogenetic localization of contained markers." [FB:WG]	4001668	SOFA	SOFA	sequence	5	SO	region	ultracontig
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000719	"An ordered and oriented set of scaffolds based on somewhat weaker sets of inferential evidence such as one set of mate pair reads together with supporting evidence from ESTs or location of markers from SNP or microsatellite maps, or cytogenetic localization of contained markers." [FB:WG]	4966171	SOFA	SOFA	sequence	6	SO	sequence_feature	ultracontig
SO:0000720	\N	\N	"A transposable element that is foreign." [SO:ke]	SO:0000720	"A transposable element that is foreign." [SO:ke]	45653	\N	\N	sequence	0	SO	foreign_transposable_element	foreign_transposable_element
SO:0000101	SO:0000720	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000720	"A transposable element that is foreign." [SO:ke]	490318	\N	SOFA	sequence	1	SO	transposable_element	foreign_transposable_element
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000720	"A transposable element that is foreign." [SO:ke]	1072805	SOFA	SOFA	sequence	2	SO	integrated_mobile_genetic_element	foreign_transposable_element
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000720	"A transposable element that is foreign." [SO:ke]	1903859	SOFA	SOFA	sequence	3	SO	mobile_genetic_element	foreign_transposable_element
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000720	"A transposable element that is foreign." [SO:ke]	2928333	SOFA	SOFA	sequence	4	SO	biological_region	foreign_transposable_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000720	"A transposable element that is foreign." [SO:ke]	4001669	SOFA	SOFA	sequence	5	SO	region	foreign_transposable_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000720	"A transposable element that is foreign." [SO:ke]	4966172	SOFA	SOFA	sequence	6	SO	sequence_feature	foreign_transposable_element
SO:0000721	\N	\N	"A gene that encodes a dicistronic primary transcript." [SO:xp]	SO:0000721	"A gene that encodes a dicistronic primary transcript." [SO:xp]	45654	\N	\N	sequence	0	SO	gene_with_dicistronic_primary_transcript	gene_with_dicistronic_primary_transcript
SO:0000692	SO:0000721	\N	"A gene that encodes a dicistronic transcript." [SO:xp]	SO:0000721	"A gene that encodes a dicistronic primary transcript." [SO:xp]	490319	\N	\N	sequence	1	SO	gene_with_dicistronic_transcript	gene_with_dicistronic_primary_transcript
SO:0000690	SO:0000692	\N	"A gene that encodes a polycistronic transcript." [SO:xp]	SO:0000721	"A gene that encodes a dicistronic primary transcript." [SO:xp]	1072806	\N	\N	sequence	2	SO	gene_with_polycistronic_transcript	gene_with_dicistronic_primary_transcript
SO:0000704	SO:0000690	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000721	"A gene that encodes a dicistronic primary transcript." [SO:xp]	1903860	\N	SOFA	sequence	3	SO	gene	gene_with_dicistronic_primary_transcript
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000721	"A gene that encodes a dicistronic primary transcript." [SO:xp]	2928334	SOFA	SOFA	sequence	4	SO	biological_region	gene_with_dicistronic_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000721	"A gene that encodes a dicistronic primary transcript." [SO:xp]	4001670	SOFA	SOFA	sequence	5	SO	region	gene_with_dicistronic_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000721	"A gene that encodes a dicistronic primary transcript." [SO:xp]	4966173	SOFA	SOFA	sequence	6	SO	sequence_feature	gene_with_dicistronic_primary_transcript
SO:0000722	\N	\N	"A gene that encodes a polycistronic mRNA." [SO:xp]	SO:0000722	"A gene that encodes a polycistronic mRNA." [SO:xp]	45655	\N	\N	sequence	0	SO	gene_with_dicistronic_mRNA	gene_with_dicistronic_mRNA
SO:0000692	SO:0000722	\N	"A gene that encodes a dicistronic transcript." [SO:xp]	SO:0000722	"A gene that encodes a polycistronic mRNA." [SO:xp]	490320	\N	\N	sequence	1	SO	gene_with_dicistronic_transcript	gene_with_dicistronic_mRNA
SO:0000690	SO:0000692	\N	"A gene that encodes a polycistronic transcript." [SO:xp]	SO:0000722	"A gene that encodes a polycistronic mRNA." [SO:xp]	1072807	\N	\N	sequence	2	SO	gene_with_polycistronic_transcript	gene_with_dicistronic_mRNA
SO:0000704	SO:0000690	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000722	"A gene that encodes a polycistronic mRNA." [SO:xp]	1903861	\N	SOFA	sequence	3	SO	gene	gene_with_dicistronic_mRNA
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000722	"A gene that encodes a polycistronic mRNA." [SO:xp]	2928335	SOFA	SOFA	sequence	4	SO	biological_region	gene_with_dicistronic_mRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000722	"A gene that encodes a polycistronic mRNA." [SO:xp]	4001671	SOFA	SOFA	sequence	5	SO	region	gene_with_dicistronic_mRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000722	"A gene that encodes a polycistronic mRNA." [SO:xp]	4966174	SOFA	SOFA	sequence	6	SO	sequence_feature	gene_with_dicistronic_mRNA
SO:0000723	\N	\N	"Genomic sequence removed from the genome, as a normal event, by a process of recombination." [SO:ma]	SO:0000723	"Genomic sequence removed from the genome, as a normal event, by a process of recombination." [SO:ma]	45656	\N	\N	sequence	0	SO	iDNA	iDNA
SO:0000298	SO:0000723	\N	"" []	SO:0000723	"Genomic sequence removed from the genome, as a normal event, by a process of recombination." [SO:ma]	490321	\N	\N	sequence	1	SO	recombination_feature	iDNA
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000723	"Genomic sequence removed from the genome, as a normal event, by a process of recombination." [SO:ma]	1072808	\N	SOFA	sequence	2	SO	biological_region	iDNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000723	"Genomic sequence removed from the genome, as a normal event, by a process of recombination." [SO:ma]	1903862	SOFA	SOFA	sequence	3	SO	region	iDNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000723	"Genomic sequence removed from the genome, as a normal event, by a process of recombination." [SO:ma]	2928336	SOFA	SOFA	sequence	4	SO	sequence_feature	iDNA
SO:0000724	\N	SOFA	"A region of a DNA molecule where transfer is initiated during the process of conjugation or mobilization." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000724	"A region of a DNA molecule where transfer is initiated during the process of conjugation or mobilization." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	45657	\N	SOFA	sequence	0	SO	oriT	oriT
SO:0000296	SO:0000724	SOFA	"The origin of replication; starting site for duplication of a nucleic acid molecule to give two identical copies." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000724	"A region of a DNA molecule where transfer is initiated during the process of conjugation or mobilization." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	490322	SOFA	SOFA	sequence	1	SO	origin_of_replication	oriT
SO:0001235	SO:0000296	SOFA	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000724	"A region of a DNA molecule where transfer is initiated during the process of conjugation or mobilization." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072809	SOFA	SOFA	sequence	2	SO	replicon	oriT
SO:0001411	SO:0000296	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000724	"A region of a DNA molecule where transfer is initiated during the process of conjugation or mobilization." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072810	SOFA	SOFA	sequence	2	SO	biological_region	oriT
SO:0001411	SO:0001235	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000724	"A region of a DNA molecule where transfer is initiated during the process of conjugation or mobilization." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903863	SOFA	SOFA	sequence	3	SO	biological_region	oriT
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000724	"A region of a DNA molecule where transfer is initiated during the process of conjugation or mobilization." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2928337	SOFA	SOFA	sequence	4	SO	region	oriT
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000724	"A region of a DNA molecule where transfer is initiated during the process of conjugation or mobilization." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	3173890	SOFA	SOFA	sequence	5	SO	sequence_feature	oriT
SO:0000725	\N	biosapiens,SOFA	"The transit_peptide is a short region at the N-terminus of the peptide that directs the protein to an organelle (chloroplast, mitochondrion, microbody or cyanelle)." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000725	"The transit_peptide is a short region at the N-terminus of the peptide that directs the protein to an organelle (chloroplast, mitochondrion, microbody or cyanelle)." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	45658	\N	biosapiens,SOFA	sequence	0	SO	transit_peptide	transit_peptide
SO:0001527	SO:0000725	biosapiens,SOFA	"A region of peptide sequence used to target the polypeptide molecule to a specific organelle." [SO:ke]	SO:0000725	"The transit_peptide is a short region at the N-terminus of the peptide that directs the protein to an organelle (chloroplast, mitochondrion, microbody or cyanelle)." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	490323	biosapiens,SOFA	SOFA	sequence	1	SO	peptide_localization_signal	transit_peptide
SO:0000839	SO:0001527	biosapiens,SOFA	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0000725	"The transit_peptide is a short region at the N-terminus of the peptide that directs the protein to an organelle (chloroplast, mitochondrion, microbody or cyanelle)." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1072811	SOFA	biosapiens,SOFA	sequence	2	SO	polypeptide_region	transit_peptide
SO:0000104	SO:0000839	biosapiens,SOFA	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0000725	"The transit_peptide is a short region at the N-terminus of the peptide that directs the protein to an organelle (chloroplast, mitochondrion, microbody or cyanelle)." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903865	biosapiens,SOFA	SOFA	sequence	3	SO	polypeptide	transit_peptide
SO:0001411	SO:0000839	biosapiens,SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000725	"The transit_peptide is a short region at the N-terminus of the peptide that directs the protein to an organelle (chloroplast, mitochondrion, microbody or cyanelle)." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1903866	biosapiens,SOFA	SOFA	sequence	3	SO	biological_region	transit_peptide
SO:0001411	SO:0000104	biosapiens,SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000725	"The transit_peptide is a short region at the N-terminus of the peptide that directs the protein to an organelle (chloroplast, mitochondrion, microbody or cyanelle)." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2928339	SOFA	SOFA	sequence	4	SO	biological_region	transit_peptide
SO:0000001	SO:0001411	biosapiens,SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000725	"The transit_peptide is a short region at the N-terminus of the peptide that directs the protein to an organelle (chloroplast, mitochondrion, microbody or cyanelle)." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4001672	SOFA	SOFA	sequence	5	SO	region	transit_peptide
SO:0000110	SO:0000001	biosapiens,SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000725	"The transit_peptide is a short region at the N-terminus of the peptide that directs the protein to an organelle (chloroplast, mitochondrion, microbody or cyanelle)." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4385749	SOFA	SOFA	sequence	6	SO	sequence_feature	transit_peptide
SO:0000726	\N	\N	"The simplest repeated component of a repeat region. A single repeat." [SO:ke]	SO:0000726	"The simplest repeated component of a repeat region. A single repeat." [SO:ke]	45659	\N	\N	sequence	0	SO	repeat_unit	repeat_unit
SO:0001411	SO:0000726	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000726	"The simplest repeated component of a repeat region. A single repeat." [SO:ke]	490324	\N	SOFA	sequence	1	SO	biological_region	repeat_unit
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000726	"The simplest repeated component of a repeat region. A single repeat." [SO:ke]	1072812	SOFA	SOFA	sequence	2	SO	region	repeat_unit
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000726	"The simplest repeated component of a repeat region. A single repeat." [SO:ke]	1903867	SOFA	SOFA	sequence	3	SO	sequence_feature	repeat_unit
SO:0000727	\N	SOFA	"A regulatory region where transcription factor binding sites clustered to regulate various aspects of transcription activities. (CRMs can be located a few kb to hundred kb upstream of the basal promoter, in the coding sequence, within introns, or in the downstream 3'UTR sequences, as well as on different chromosome). A single gene can be regulated by multiple CRMs to give precise control of its spatial and temporal expression. CRMs function as nodes in large, intertwined regulatory network." [PMID:19660565, SO:SG]	SO:0000727	"A regulatory region where transcription factor binding sites clustered to regulate various aspects of transcription activities. (CRMs can be located a few kb to hundred kb upstream of the basal promoter, in the coding sequence, within introns, or in the downstream 3'UTR sequences, as well as on different chromosome). A single gene can be regulated by multiple CRMs to give precise control of its spatial and temporal expression. CRMs function as nodes in large, intertwined regulatory network." [PMID:19660565, SO:SG]	45660	\N	SOFA	sequence	0	SO	CRM	CRM
SO:0001055	SO:0000727	SOFA	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0000727	"A regulatory region where transcription factor binding sites clustered to regulate various aspects of transcription activities. (CRMs can be located a few kb to hundred kb upstream of the basal promoter, in the coding sequence, within introns, or in the downstream 3'UTR sequences, as well as on different chromosome). A single gene can be regulated by multiple CRMs to give precise control of its spatial and temporal expression. CRMs function as nodes in large, intertwined regulatory network." [PMID:19660565, SO:SG]	490325	SOFA	SOFA	sequence	1	SO	transcriptional_cis_regulatory_region	CRM
SO:0001679	SO:0001055	SOFA	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000727	"A regulatory region where transcription factor binding sites clustered to regulate various aspects of transcription activities. (CRMs can be located a few kb to hundred kb upstream of the basal promoter, in the coding sequence, within introns, or in the downstream 3'UTR sequences, as well as on different chromosome). A single gene can be regulated by multiple CRMs to give precise control of its spatial and temporal expression. CRMs function as nodes in large, intertwined regulatory network." [PMID:19660565, SO:SG]	1072813	SOFA	SOFA	sequence	2	SO	transcription_regulatory_region	CRM
SO:0005836	SO:0001679	SOFA	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000727	"A regulatory region where transcription factor binding sites clustered to regulate various aspects of transcription activities. (CRMs can be located a few kb to hundred kb upstream of the basal promoter, in the coding sequence, within introns, or in the downstream 3'UTR sequences, as well as on different chromosome). A single gene can be regulated by multiple CRMs to give precise control of its spatial and temporal expression. CRMs function as nodes in large, intertwined regulatory network." [PMID:19660565, SO:SG]	1903868	SOFA	SOFA	sequence	3	SO	regulatory_region	CRM
SO:0000831	SO:0005836	SOFA	"A region of a gene." [SO:ke]	SO:0000727	"A regulatory region where transcription factor binding sites clustered to regulate various aspects of transcription activities. (CRMs can be located a few kb to hundred kb upstream of the basal promoter, in the coding sequence, within introns, or in the downstream 3'UTR sequences, as well as on different chromosome). A single gene can be regulated by multiple CRMs to give precise control of its spatial and temporal expression. CRMs function as nodes in large, intertwined regulatory network." [PMID:19660565, SO:SG]	2928341	SOFA	SOFA	sequence	4	SO	gene_member_region	CRM
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000727	"A regulatory region where transcription factor binding sites clustered to regulate various aspects of transcription activities. (CRMs can be located a few kb to hundred kb upstream of the basal promoter, in the coding sequence, within introns, or in the downstream 3'UTR sequences, as well as on different chromosome). A single gene can be regulated by multiple CRMs to give precise control of its spatial and temporal expression. CRMs function as nodes in large, intertwined regulatory network." [PMID:19660565, SO:SG]	4001674	SOFA	SOFA	sequence	5	SO	biological_region	CRM
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000727	"A regulatory region where transcription factor binding sites clustered to regulate various aspects of transcription activities. (CRMs can be located a few kb to hundred kb upstream of the basal promoter, in the coding sequence, within introns, or in the downstream 3'UTR sequences, as well as on different chromosome). A single gene can be regulated by multiple CRMs to give precise control of its spatial and temporal expression. CRMs function as nodes in large, intertwined regulatory network." [PMID:19660565, SO:SG]	4966175	SOFA	SOFA	sequence	6	SO	region	CRM
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000727	"A regulatory region where transcription factor binding sites clustered to regulate various aspects of transcription activities. (CRMs can be located a few kb to hundred kb upstream of the basal promoter, in the coding sequence, within introns, or in the downstream 3'UTR sequences, as well as on different chromosome). A single gene can be regulated by multiple CRMs to give precise control of its spatial and temporal expression. CRMs function as nodes in large, intertwined regulatory network." [PMID:19660565, SO:SG]	5741058	SOFA	SOFA	sequence	7	SO	sequence_feature	CRM
SO:0000728	\N	\N	"A region of a peptide that is able to excise itself and rejoin the remaining portions with a peptide bond." [SO:ke]	SO:0000728	"A region of a peptide that is able to excise itself and rejoin the remaining portions with a peptide bond." [SO:ke]	45661	\N	\N	sequence	0	SO	intein	intein
SO:0100011	SO:0000728	\N	"The cleaved_peptide_region is the region of a peptide sequence that is cleaved during maturation." [EBIBS:GAR]	SO:0000728	"A region of a peptide that is able to excise itself and rejoin the remaining portions with a peptide bond." [SO:ke]	490326	\N	biosapiens,SOFA	sequence	1	SO	cleaved_peptide_region	intein
SO:0000839	SO:0100011	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0000728	"A region of a peptide that is able to excise itself and rejoin the remaining portions with a peptide bond." [SO:ke]	1072814	biosapiens,SOFA	biosapiens,SOFA	sequence	2	SO	polypeptide_region	intein
SO:0001063	SO:0100011	\N	"An immature_peptide_region is the extent of the peptide after it has been translated and before any processing occurs." [EBIBS:GAR]	SO:0000728	"A region of a peptide that is able to excise itself and rejoin the remaining portions with a peptide bond." [SO:ke]	1072815	biosapiens,SOFA	biosapiens,SOFA	sequence	2	SO	immature_peptide_region	intein
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0000728	"A region of a peptide that is able to excise itself and rejoin the remaining portions with a peptide bond." [SO:ke]	2928344	biosapiens,SOFA	SOFA	sequence	4	SO	polypeptide	intein
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000728	"A region of a peptide that is able to excise itself and rejoin the remaining portions with a peptide bond." [SO:ke]	2928345	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	intein
SO:0000839	SO:0001063	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0000728	"A region of a peptide that is able to excise itself and rejoin the remaining portions with a peptide bond." [SO:ke]	1903871	biosapiens,SOFA	biosapiens,SOFA	sequence	3	SO	polypeptide_region	intein
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000728	"A region of a peptide that is able to excise itself and rejoin the remaining portions with a peptide bond." [SO:ke]	3173891	SOFA	SOFA	sequence	5	SO	biological_region	intein
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000728	"A region of a peptide that is able to excise itself and rejoin the remaining portions with a peptide bond." [SO:ke]	4385750	SOFA	SOFA	sequence	6	SO	region	intein
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000728	"A region of a peptide that is able to excise itself and rejoin the remaining portions with a peptide bond." [SO:ke]	5180704	SOFA	SOFA	sequence	7	SO	sequence_feature	intein
SO:0000729	\N	\N	"An attribute of protein-coding genes where the initial protein product contains an intein." [SO:ke]	SO:0000729	"An attribute of protein-coding genes where the initial protein product contains an intein." [SO:ke]	45662	\N	\N	sequence	0	SO	intein_containing	intein_containing
SO:0000010	SO:0000729	\N	"" []	SO:0000729	"An attribute of protein-coding genes where the initial protein product contains an intein." [SO:ke]	490327	\N	\N	sequence	1	SO	protein_coding	intein_containing
SO:0000401	SO:0000010	\N	"" []	SO:0000729	"An attribute of protein-coding genes where the initial protein product contains an intein." [SO:ke]	1072816	\N	\N	sequence	2	SO	gene_attribute	intein_containing
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000729	"An attribute of protein-coding genes where the initial protein product contains an intein." [SO:ke]	1903872	\N	\N	sequence	3	SO	feature_attribute	intein_containing
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000729	"An attribute of protein-coding genes where the initial protein product contains an intein." [SO:ke]	2928346	\N	\N	sequence	4	SO	sequence_attribute	intein_containing
SO:0000730	\N	SOFA	"A gap in the sequence of known length. The unknown bases are filled in with N's." [SO:ke]	SO:0000730	"A gap in the sequence of known length. The unknown bases are filled in with N's." [SO:ke]	45663	\N	SOFA	sequence	0	SO	gap	gap
SO:0000143	SO:0000730	SOFA	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0000730	"A gap in the sequence of known length. The unknown bases are filled in with N's." [SO:ke]	490328	SOFA	SOFA	sequence	1	SO	assembly_component	gap
SO:0000353	SO:0000730	SOFA	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0000730	"A gap in the sequence of known length. The unknown bases are filled in with N's." [SO:ke]	490329	SOFA	SOFA	sequence	1	SO	sequence_assembly	gap
SO:0001410	SO:0000143	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000730	"A gap in the sequence of known length. The unknown bases are filled in with N's." [SO:ke]	1072817	SOFA	SOFA	sequence	2	SO	experimental_feature	gap
SO:0001248	SO:0000353	SOFA	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0000730	"A gap in the sequence of known length. The unknown bases are filled in with N's." [SO:ke]	1072818	SOFA	SOFA	sequence	2	SO	assembly	gap
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000730	"A gap in the sequence of known length. The unknown bases are filled in with N's." [SO:ke]	2928348	SOFA	SOFA	sequence	4	SO	region	gap
SO:0001410	SO:0001248	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000730	"A gap in the sequence of known length. The unknown bases are filled in with N's." [SO:ke]	1903874	SOFA	SOFA	sequence	3	SO	experimental_feature	gap
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000730	"A gap in the sequence of known length. The unknown bases are filled in with N's." [SO:ke]	3173893	SOFA	SOFA	sequence	5	SO	sequence_feature	gap
SO:0000731	\N	\N	"An attribute to describe a feature that is incomplete." [SO:ke]	SO:0000731	"An attribute to describe a feature that is incomplete." [SO:ke]	45664	\N	\N	sequence	0	SO	fragmentary	fragmentary
SO:0000905	SO:0000731	\N	"An attribute describing the status of a feature, based on the available evidence." [SO:ke]	SO:0000731	"An attribute to describe a feature that is incomplete." [SO:ke]	490330	\N	\N	sequence	1	SO	status	fragmentary
SO:0000733	SO:0000905	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000731	"An attribute to describe a feature that is incomplete." [SO:ke]	1072819	\N	\N	sequence	2	SO	feature_attribute	fragmentary
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000731	"An attribute to describe a feature that is incomplete." [SO:ke]	1903875	\N	\N	sequence	3	SO	sequence_attribute	fragmentary
SO:0000732	\N	\N	"An attribute describing an unverified region." [SO:ke]	SO:0000732	"An attribute describing an unverified region." [SO:ke]	45665	\N	\N	sequence	0	SO	predicted	predicted
SO:0000905	SO:0000732	\N	"An attribute describing the status of a feature, based on the available evidence." [SO:ke]	SO:0000732	"An attribute describing an unverified region." [SO:ke]	490331	\N	\N	sequence	1	SO	status	predicted
SO:0000733	SO:0000905	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000732	"An attribute describing an unverified region." [SO:ke]	1072820	\N	\N	sequence	2	SO	feature_attribute	predicted
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000732	"An attribute describing an unverified region." [SO:ke]	1903876	\N	\N	sequence	3	SO	sequence_attribute	predicted
SO:0000733	\N	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000733	"An attribute describing a located_sequence_feature." [SO:ke]	45666	\N	\N	sequence	0	SO	feature_attribute	feature_attribute
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000733	"An attribute describing a located_sequence_feature." [SO:ke]	490332	\N	\N	sequence	1	SO	sequence_attribute	feature_attribute
SO:0000734	\N	\N	"An exemplar is a representative cDNA sequence for each gene. The exemplar approach is a method that usually involves some initial clustering into gene groups and the subsequent selection of a representative from each gene group." [http://mged.sourceforge.net/ontologies/MGEDontology.php]	SO:0000734	"An exemplar is a representative cDNA sequence for each gene. The exemplar approach is a method that usually involves some initial clustering into gene groups and the subsequent selection of a representative from each gene group." [http://mged.sourceforge.net/ontologies/MGEDontology.php]	45667	\N	\N	sequence	0	SO	exemplar_mRNA	exemplar_mRNA
SO:0000234	SO:0000734	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000734	"An exemplar is a representative cDNA sequence for each gene. The exemplar approach is a method that usually involves some initial clustering into gene groups and the subsequent selection of a representative from each gene group." [http://mged.sourceforge.net/ontologies/MGEDontology.php]	490333	\N	SOFA	sequence	1	SO	mRNA	exemplar_mRNA
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000734	"An exemplar is a representative cDNA sequence for each gene. The exemplar approach is a method that usually involves some initial clustering into gene groups and the subsequent selection of a representative from each gene group." [http://mged.sourceforge.net/ontologies/MGEDontology.php]	1072821	SOFA	SOFA	sequence	2	SO	mature_transcript	exemplar_mRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000734	"An exemplar is a representative cDNA sequence for each gene. The exemplar approach is a method that usually involves some initial clustering into gene groups and the subsequent selection of a representative from each gene group." [http://mged.sourceforge.net/ontologies/MGEDontology.php]	1903877	SOFA	SOFA	sequence	3	SO	transcript	exemplar_mRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000734	"An exemplar is a representative cDNA sequence for each gene. The exemplar approach is a method that usually involves some initial clustering into gene groups and the subsequent selection of a representative from each gene group." [http://mged.sourceforge.net/ontologies/MGEDontology.php]	2928349	SOFA	SOFA	sequence	4	SO	gene_member_region	exemplar_mRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000734	"An exemplar is a representative cDNA sequence for each gene. The exemplar approach is a method that usually involves some initial clustering into gene groups and the subsequent selection of a representative from each gene group." [http://mged.sourceforge.net/ontologies/MGEDontology.php]	4001676	SOFA	SOFA	sequence	5	SO	biological_region	exemplar_mRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000734	"An exemplar is a representative cDNA sequence for each gene. The exemplar approach is a method that usually involves some initial clustering into gene groups and the subsequent selection of a representative from each gene group." [http://mged.sourceforge.net/ontologies/MGEDontology.php]	4966176	SOFA	SOFA	sequence	6	SO	region	exemplar_mRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000734	"An exemplar is a representative cDNA sequence for each gene. The exemplar approach is a method that usually involves some initial clustering into gene groups and the subsequent selection of a representative from each gene group." [http://mged.sourceforge.net/ontologies/MGEDontology.php]	5741059	SOFA	SOFA	sequence	7	SO	sequence_feature	exemplar_mRNA
SO:0000735	\N	\N	"" []	SO:0000735	"" []	45668	\N	\N	sequence	0	SO	sequence_location	sequence_location
SO:0000400	SO:0000735	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000735	"" []	490334	\N	\N	sequence	1	SO	sequence_attribute	sequence_location
SO:0000736	\N	\N	"" []	SO:0000736	"" []	45669	\N	\N	sequence	0	SO	organelle_sequence	organelle_sequence
SO:0000735	SO:0000736	\N	"" []	SO:0000736	"" []	490335	\N	\N	sequence	1	SO	sequence_location	organelle_sequence
SO:0000400	SO:0000735	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000736	"" []	1072822	\N	\N	sequence	2	SO	sequence_attribute	organelle_sequence
SO:0000737	\N	\N	"" []	SO:0000737	"" []	45670	\N	\N	sequence	0	SO	mitochondrial_sequence	mitochondrial_sequence
SO:0000736	SO:0000737	\N	"" []	SO:0000737	"" []	490336	\N	\N	sequence	1	SO	organelle_sequence	mitochondrial_sequence
SO:0000735	SO:0000736	\N	"" []	SO:0000737	"" []	1072823	\N	\N	sequence	2	SO	sequence_location	mitochondrial_sequence
SO:0000400	SO:0000735	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000737	"" []	1903878	\N	\N	sequence	3	SO	sequence_attribute	mitochondrial_sequence
SO:0000738	\N	\N	"" []	SO:0000738	"" []	45671	\N	\N	sequence	0	SO	nuclear_sequence	nuclear_sequence
SO:0000736	SO:0000738	\N	"" []	SO:0000738	"" []	490337	\N	\N	sequence	1	SO	organelle_sequence	nuclear_sequence
SO:0000735	SO:0000736	\N	"" []	SO:0000738	"" []	1072824	\N	\N	sequence	2	SO	sequence_location	nuclear_sequence
SO:0000400	SO:0000735	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000738	"" []	1903879	\N	\N	sequence	3	SO	sequence_attribute	nuclear_sequence
SO:0000739	\N	\N	"" []	SO:0000739	"" []	45672	\N	\N	sequence	0	SO	nucleomorphic_sequence	nucleomorphic_sequence
SO:0000736	SO:0000739	\N	"" []	SO:0000739	"" []	490338	\N	\N	sequence	1	SO	organelle_sequence	nucleomorphic_sequence
SO:0000735	SO:0000736	\N	"" []	SO:0000739	"" []	1072825	\N	\N	sequence	2	SO	sequence_location	nucleomorphic_sequence
SO:0000400	SO:0000735	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000739	"" []	1903880	\N	\N	sequence	3	SO	sequence_attribute	nucleomorphic_sequence
SO:0000740	\N	\N	"" []	SO:0000740	"" []	45673	\N	\N	sequence	0	SO	plastid_sequence	plastid_sequence
SO:0000736	SO:0000740	\N	"" []	SO:0000740	"" []	490339	\N	\N	sequence	1	SO	organelle_sequence	plastid_sequence
SO:0000735	SO:0000736	\N	"" []	SO:0000740	"" []	1072826	\N	\N	sequence	2	SO	sequence_location	plastid_sequence
SO:0000400	SO:0000735	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000740	"" []	1903881	\N	\N	sequence	3	SO	sequence_attribute	plastid_sequence
SO:0000741	\N	\N	"A kinetoplast is an interlocked network of thousands of minicircles and tens of maxicircles, located near the base of the flagellum of some protozoan species." [PMID:8395055]	SO:0000741	"A kinetoplast is an interlocked network of thousands of minicircles and tens of maxicircles, located near the base of the flagellum of some protozoan species." [PMID:8395055]	45674	\N	\N	sequence	0	SO	kinetoplast	kinetoplast
SO:0001026	SO:0000741	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0000741	"A kinetoplast is an interlocked network of thousands of minicircles and tens of maxicircles, located near the base of the flagellum of some protozoan species." [PMID:8395055]	490340	\N	\N	sequence	1	SO	genome	kinetoplast
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000741	"A kinetoplast is an interlocked network of thousands of minicircles and tens of maxicircles, located near the base of the flagellum of some protozoan species." [PMID:8395055]	1072827	\N	\N	sequence	2	SO	sequence_collection	kinetoplast
SO:0000742	\N	\N	"A maxicircle is a replicon, part of a kinetoplast, that contains open reading frames and replicates via a rolling circle method." [PMID:8395055]	SO:0000742	"A maxicircle is a replicon, part of a kinetoplast, that contains open reading frames and replicates via a rolling circle method." [PMID:8395055]	45675	\N	\N	sequence	0	SO	maxicircle	maxicircle
SO:0001235	SO:0000742	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000742	"A maxicircle is a replicon, part of a kinetoplast, that contains open reading frames and replicates via a rolling circle method." [PMID:8395055]	490341	\N	SOFA	sequence	1	SO	replicon	maxicircle
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000742	"A maxicircle is a replicon, part of a kinetoplast, that contains open reading frames and replicates via a rolling circle method." [PMID:8395055]	1072828	SOFA	SOFA	sequence	2	SO	biological_region	maxicircle
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000742	"A maxicircle is a replicon, part of a kinetoplast, that contains open reading frames and replicates via a rolling circle method." [PMID:8395055]	1903882	SOFA	SOFA	sequence	3	SO	region	maxicircle
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000742	"A maxicircle is a replicon, part of a kinetoplast, that contains open reading frames and replicates via a rolling circle method." [PMID:8395055]	2928350	SOFA	SOFA	sequence	4	SO	sequence_feature	maxicircle
SO:0000743	\N	\N	"" []	SO:0000743	"" []	45676	\N	\N	sequence	0	SO	apicoplast_sequence	apicoplast_sequence
SO:0000740	SO:0000743	\N	"" []	SO:0000743	"" []	490342	\N	\N	sequence	1	SO	plastid_sequence	apicoplast_sequence
SO:0000736	SO:0000740	\N	"" []	SO:0000743	"" []	1072829	\N	\N	sequence	2	SO	organelle_sequence	apicoplast_sequence
SO:0000735	SO:0000736	\N	"" []	SO:0000743	"" []	1903883	\N	\N	sequence	3	SO	sequence_location	apicoplast_sequence
SO:0000400	SO:0000735	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000743	"" []	2928351	\N	\N	sequence	4	SO	sequence_attribute	apicoplast_sequence
SO:0000744	\N	\N	"" []	SO:0000744	"" []	45677	\N	\N	sequence	0	SO	chromoplast_sequence	chromoplast_sequence
SO:0000740	SO:0000744	\N	"" []	SO:0000744	"" []	490343	\N	\N	sequence	1	SO	plastid_sequence	chromoplast_sequence
SO:0000736	SO:0000740	\N	"" []	SO:0000744	"" []	1072830	\N	\N	sequence	2	SO	organelle_sequence	chromoplast_sequence
SO:0000735	SO:0000736	\N	"" []	SO:0000744	"" []	1903884	\N	\N	sequence	3	SO	sequence_location	chromoplast_sequence
SO:0000400	SO:0000735	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000744	"" []	2928352	\N	\N	sequence	4	SO	sequence_attribute	chromoplast_sequence
SO:0000745	\N	\N	"" []	SO:0000745	"" []	45678	\N	\N	sequence	0	SO	chloroplast_sequence	chloroplast_sequence
SO:0000740	SO:0000745	\N	"" []	SO:0000745	"" []	490344	\N	\N	sequence	1	SO	plastid_sequence	chloroplast_sequence
SO:0000736	SO:0000740	\N	"" []	SO:0000745	"" []	1072831	\N	\N	sequence	2	SO	organelle_sequence	chloroplast_sequence
SO:0000735	SO:0000736	\N	"" []	SO:0000745	"" []	1903885	\N	\N	sequence	3	SO	sequence_location	chloroplast_sequence
SO:0000400	SO:0000735	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000745	"" []	2928353	\N	\N	sequence	4	SO	sequence_attribute	chloroplast_sequence
SO:0000746	\N	\N	"" []	SO:0000746	"" []	45679	\N	\N	sequence	0	SO	cyanelle_sequence	cyanelle_sequence
SO:0000740	SO:0000746	\N	"" []	SO:0000746	"" []	490345	\N	\N	sequence	1	SO	plastid_sequence	cyanelle_sequence
SO:0000736	SO:0000740	\N	"" []	SO:0000746	"" []	1072832	\N	\N	sequence	2	SO	organelle_sequence	cyanelle_sequence
SO:0000735	SO:0000736	\N	"" []	SO:0000746	"" []	1903886	\N	\N	sequence	3	SO	sequence_location	cyanelle_sequence
SO:0000400	SO:0000735	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000746	"" []	2928354	\N	\N	sequence	4	SO	sequence_attribute	cyanelle_sequence
SO:0000747	\N	\N	"" []	SO:0000747	"" []	45680	\N	\N	sequence	0	SO	leucoplast_sequence	leucoplast_sequence
SO:0000740	SO:0000747	\N	"" []	SO:0000747	"" []	490346	\N	\N	sequence	1	SO	plastid_sequence	leucoplast_sequence
SO:0000736	SO:0000740	\N	"" []	SO:0000747	"" []	1072833	\N	\N	sequence	2	SO	organelle_sequence	leucoplast_sequence
SO:0000735	SO:0000736	\N	"" []	SO:0000747	"" []	1903887	\N	\N	sequence	3	SO	sequence_location	leucoplast_sequence
SO:0000400	SO:0000735	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000747	"" []	2928355	\N	\N	sequence	4	SO	sequence_attribute	leucoplast_sequence
SO:0000748	\N	\N	"" []	SO:0000748	"" []	45681	\N	\N	sequence	0	SO	proplastid_sequence	proplastid_sequence
SO:0000740	SO:0000748	\N	"" []	SO:0000748	"" []	490347	\N	\N	sequence	1	SO	plastid_sequence	proplastid_sequence
SO:0000736	SO:0000740	\N	"" []	SO:0000748	"" []	1072834	\N	\N	sequence	2	SO	organelle_sequence	proplastid_sequence
SO:0000735	SO:0000736	\N	"" []	SO:0000748	"" []	1903888	\N	\N	sequence	3	SO	sequence_location	proplastid_sequence
SO:0000400	SO:0000735	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000748	"" []	2928356	\N	\N	sequence	4	SO	sequence_attribute	proplastid_sequence
SO:0000749	\N	\N	"" []	SO:0000749	"" []	45682	\N	\N	sequence	0	SO	plasmid_location	plasmid_location
SO:0000735	SO:0000749	\N	"" []	SO:0000749	"" []	490348	\N	\N	sequence	1	SO	sequence_location	plasmid_location
SO:0000400	SO:0000735	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000749	"" []	1072835	\N	\N	sequence	2	SO	sequence_attribute	plasmid_location
SO:0000750	\N	\N	"An origin_of_replication that is used for the amplification of a chromosomal nucleic acid sequence." [SO:ma]	SO:0000750	"An origin_of_replication that is used for the amplification of a chromosomal nucleic acid sequence." [SO:ma]	45683	\N	\N	sequence	0	SO	amplification_origin	amplification_origin
SO:0000296	SO:0000750	\N	"The origin of replication; starting site for duplication of a nucleic acid molecule to give two identical copies." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000750	"An origin_of_replication that is used for the amplification of a chromosomal nucleic acid sequence." [SO:ma]	490349	\N	SOFA	sequence	1	SO	origin_of_replication	amplification_origin
SO:0001235	SO:0000296	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000750	"An origin_of_replication that is used for the amplification of a chromosomal nucleic acid sequence." [SO:ma]	1072836	SOFA	SOFA	sequence	2	SO	replicon	amplification_origin
SO:0001411	SO:0000296	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000750	"An origin_of_replication that is used for the amplification of a chromosomal nucleic acid sequence." [SO:ma]	1072837	SOFA	SOFA	sequence	2	SO	biological_region	amplification_origin
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000750	"An origin_of_replication that is used for the amplification of a chromosomal nucleic acid sequence." [SO:ma]	1903889	SOFA	SOFA	sequence	3	SO	biological_region	amplification_origin
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000750	"An origin_of_replication that is used for the amplification of a chromosomal nucleic acid sequence." [SO:ma]	2928357	SOFA	SOFA	sequence	4	SO	region	amplification_origin
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000750	"An origin_of_replication that is used for the amplification of a chromosomal nucleic acid sequence." [SO:ma]	3173894	SOFA	SOFA	sequence	5	SO	sequence_feature	amplification_origin
SO:0000751	\N	\N	"" []	SO:0000751	"" []	45684	\N	\N	sequence	0	SO	proviral_location	proviral_location
SO:0000735	SO:0000751	\N	"" []	SO:0000751	"" []	490350	\N	\N	sequence	1	SO	sequence_location	proviral_location
SO:0000400	SO:0000735	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000751	"" []	1072838	\N	\N	sequence	2	SO	sequence_attribute	proviral_location
SO:0000752	\N	SOFA	"" []	SO:0000752	"" []	45685	\N	SOFA	sequence	0	SO	gene_group_regulatory_region	gene_group_regulatory_region
SO:0001679	SO:0000752	SOFA	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000752	"" []	490351	SOFA	SOFA	sequence	1	SO	transcription_regulatory_region	gene_group_regulatory_region
SO:0005836	SO:0001679	SOFA	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000752	"" []	1072839	SOFA	SOFA	sequence	2	SO	regulatory_region	gene_group_regulatory_region
SO:0000831	SO:0005836	SOFA	"A region of a gene." [SO:ke]	SO:0000752	"" []	1903891	SOFA	SOFA	sequence	3	SO	gene_member_region	gene_group_regulatory_region
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000752	"" []	2928359	SOFA	SOFA	sequence	4	SO	biological_region	gene_group_regulatory_region
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000752	"" []	4001677	SOFA	SOFA	sequence	5	SO	region	gene_group_regulatory_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000752	"" []	4966177	SOFA	SOFA	sequence	6	SO	sequence_feature	gene_group_regulatory_region
SO:0000753	\N	SOFA	"The region of sequence that has been inserted and is being propagated by the clone." [SO:ke]	SO:0000753	"The region of sequence that has been inserted and is being propagated by the clone." [SO:ke]	45686	\N	SOFA	sequence	0	SO	clone_insert	clone_insert
SO:0000151	SO:0000753	SOFA	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0000753	"The region of sequence that has been inserted and is being propagated by the clone." [SO:ke]	490352	SOFA	SOFA	sequence	1	SO	clone	clone_insert
SO:0000695	SO:0000753	SOFA	"A sequence used in experiment." [SO:ke]	SO:0000753	"The region of sequence that has been inserted and is being propagated by the clone." [SO:ke]	490353	SOFA	SOFA	sequence	1	SO	reagent	clone_insert
SO:0000695	SO:0000151	SOFA	"A sequence used in experiment." [SO:ke]	SO:0000753	"The region of sequence that has been inserted and is being propagated by the clone." [SO:ke]	1072840	SOFA	SOFA	sequence	2	SO	reagent	clone_insert
SO:0001409	SO:0000695	SOFA	"A region which is intended for use in an experiment." [SO:cb]	SO:0000753	"The region of sequence that has been inserted and is being propagated by the clone." [SO:ke]	1903892	SOFA	SOFA	sequence	3	SO	biomaterial_region	clone_insert
SO:0000001	SO:0001409	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000753	"The region of sequence that has been inserted and is being propagated by the clone." [SO:ke]	2018221	SOFA	SOFA	sequence	4	SO	region	clone_insert
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000753	"The region of sequence that has been inserted and is being propagated by the clone." [SO:ke]	3173895	SOFA	SOFA	sequence	5	SO	sequence_feature	clone_insert
SO:0000754	\N	\N	"The lambda bacteriophage is the vector for the linear lambda clone. The genes involved in the lysogenic pathway are removed from the from the viral DNA. Up to 25 kb of foreign DNA can then be inserted into the lambda genome." [ISBN:0-1767-2380-8]	SO:0000754	"The lambda bacteriophage is the vector for the linear lambda clone. The genes involved in the lysogenic pathway are removed from the from the viral DNA. Up to 25 kb of foreign DNA can then be inserted into the lambda genome." [ISBN:0-1767-2380-8]	45687	\N	\N	sequence	0	SO	lambda_vector	lambda_vector
SO:0000440	SO:0000754	\N	"A replicon that has been modified to act as a vector for foreign sequence." [SO:ma]	SO:0000754	"The lambda bacteriophage is the vector for the linear lambda clone. The genes involved in the lysogenic pathway are removed from the from the viral DNA. Up to 25 kb of foreign DNA can then be inserted into the lambda genome." [ISBN:0-1767-2380-8]	490354	\N	\N	sequence	1	SO	vector_replicon	lambda_vector
SO:0000151	SO:0000440	\N	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0000754	"The lambda bacteriophage is the vector for the linear lambda clone. The genes involved in the lysogenic pathway are removed from the from the viral DNA. Up to 25 kb of foreign DNA can then be inserted into the lambda genome." [ISBN:0-1767-2380-8]	1072842	\N	SOFA	sequence	2	SO	clone	lambda_vector
SO:0001235	SO:0000440	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000754	"The lambda bacteriophage is the vector for the linear lambda clone. The genes involved in the lysogenic pathway are removed from the from the viral DNA. Up to 25 kb of foreign DNA can then be inserted into the lambda genome." [ISBN:0-1767-2380-8]	1072843	\N	SOFA	sequence	2	SO	replicon	lambda_vector
SO:0000695	SO:0000151	\N	"A sequence used in experiment." [SO:ke]	SO:0000754	"The lambda bacteriophage is the vector for the linear lambda clone. The genes involved in the lysogenic pathway are removed from the from the viral DNA. Up to 25 kb of foreign DNA can then be inserted into the lambda genome." [ISBN:0-1767-2380-8]	1903894	SOFA	SOFA	sequence	3	SO	reagent	lambda_vector
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000754	"The lambda bacteriophage is the vector for the linear lambda clone. The genes involved in the lysogenic pathway are removed from the from the viral DNA. Up to 25 kb of foreign DNA can then be inserted into the lambda genome." [ISBN:0-1767-2380-8]	1903895	SOFA	SOFA	sequence	3	SO	biological_region	lambda_vector
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000754	"The lambda bacteriophage is the vector for the linear lambda clone. The genes involved in the lysogenic pathway are removed from the from the viral DNA. Up to 25 kb of foreign DNA can then be inserted into the lambda genome." [ISBN:0-1767-2380-8]	2928361	SOFA	SOFA	sequence	4	SO	biomaterial_region	lambda_vector
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000754	"The lambda bacteriophage is the vector for the linear lambda clone. The genes involved in the lysogenic pathway are removed from the from the viral DNA. Up to 25 kb of foreign DNA can then be inserted into the lambda genome." [ISBN:0-1767-2380-8]	2928362	SOFA	SOFA	sequence	4	SO	region	lambda_vector
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000754	"The lambda bacteriophage is the vector for the linear lambda clone. The genes involved in the lysogenic pathway are removed from the from the viral DNA. Up to 25 kb of foreign DNA can then be inserted into the lambda genome." [ISBN:0-1767-2380-8]	4001678	SOFA	SOFA	sequence	5	SO	region	lambda_vector
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000754	"The lambda bacteriophage is the vector for the linear lambda clone. The genes involved in the lysogenic pathway are removed from the from the viral DNA. Up to 25 kb of foreign DNA can then be inserted into the lambda genome." [ISBN:0-1767-2380-8]	4966178	SOFA	SOFA	sequence	6	SO	sequence_feature	lambda_vector
SO:0000755	\N	\N	"" []	SO:0000755	"" []	45688	\N	\N	sequence	0	SO	plasmid_vector	plasmid_vector
SO:0000440	SO:0000755	\N	"A replicon that has been modified to act as a vector for foreign sequence." [SO:ma]	SO:0000755	"" []	490355	\N	\N	sequence	1	SO	vector_replicon	plasmid_vector
SO:0000151	SO:0000440	\N	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0000755	"" []	1072844	\N	SOFA	sequence	2	SO	clone	plasmid_vector
SO:0001235	SO:0000440	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000755	"" []	1072845	\N	SOFA	sequence	2	SO	replicon	plasmid_vector
SO:0000695	SO:0000151	\N	"A sequence used in experiment." [SO:ke]	SO:0000755	"" []	1903896	SOFA	SOFA	sequence	3	SO	reagent	plasmid_vector
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000755	"" []	1903897	SOFA	SOFA	sequence	3	SO	biological_region	plasmid_vector
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000755	"" []	2928363	SOFA	SOFA	sequence	4	SO	biomaterial_region	plasmid_vector
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000755	"" []	2928364	SOFA	SOFA	sequence	4	SO	region	plasmid_vector
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000755	"" []	4001680	SOFA	SOFA	sequence	5	SO	region	plasmid_vector
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000755	"" []	4966179	SOFA	SOFA	sequence	6	SO	sequence_feature	plasmid_vector
SO:0000756	\N	\N	"DNA synthesized by reverse transcriptase using RNA as a template." [SO:ma]	SO:0000756	"DNA synthesized by reverse transcriptase using RNA as a template." [SO:ma]	45689	\N	\N	sequence	0	SO	cDNA	cDNA
SO:0000352	SO:0000756	\N	"An attribute describing a sequence consisting of nucleobases bound to a repeating unit made of a 2-deoxy-D-ribose ring connected to a phosphate backbone." [RSC:cb]	SO:0000756	"DNA synthesized by reverse transcriptase using RNA as a template." [SO:ma]	490356	\N	\N	sequence	1	SO	DNA	cDNA
SO:0000348	SO:0000352	\N	"An attribute describing a sequence consisting of nucleobases bound to repeating units. The forms found in nature are deoxyribonucleic acid (DNA), where the repeating units are 2-deoxy-D-ribose rings connected to a phosphate backbone, and ribonucleic acid (RNA), where the repeating units are D-ribose rings connected to a phosphate backbone." [CHEBI:33696, RSC:cb]	SO:0000756	"DNA synthesized by reverse transcriptase using RNA as a template." [SO:ma]	1072846	\N	\N	sequence	2	SO	nucleic_acid	cDNA
SO:0000443	SO:0000348	\N	"An attribute to describe the kind of biological sequence." [SO:ke]	SO:0000756	"DNA synthesized by reverse transcriptase using RNA as a template." [SO:ma]	1903898	\N	\N	sequence	3	SO	polymer_attribute	cDNA
SO:0000400	SO:0000443	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000756	"DNA synthesized by reverse transcriptase using RNA as a template." [SO:ma]	2928365	\N	\N	sequence	4	SO	sequence_attribute	cDNA
SO:0000757	\N	\N	"" []	SO:0000757	"" []	45690	\N	\N	sequence	0	SO	single_stranded_cDNA	single_stranded_cDNA
SO:0000756	SO:0000757	\N	"DNA synthesized by reverse transcriptase using RNA as a template." [SO:ma]	SO:0000757	"" []	490357	\N	\N	sequence	1	SO	cDNA	single_stranded_cDNA
SO:0000352	SO:0000756	\N	"An attribute describing a sequence consisting of nucleobases bound to a repeating unit made of a 2-deoxy-D-ribose ring connected to a phosphate backbone." [RSC:cb]	SO:0000757	"" []	1072847	\N	\N	sequence	2	SO	DNA	single_stranded_cDNA
SO:0000348	SO:0000352	\N	"An attribute describing a sequence consisting of nucleobases bound to repeating units. The forms found in nature are deoxyribonucleic acid (DNA), where the repeating units are 2-deoxy-D-ribose rings connected to a phosphate backbone, and ribonucleic acid (RNA), where the repeating units are D-ribose rings connected to a phosphate backbone." [CHEBI:33696, RSC:cb]	SO:0000757	"" []	1903899	\N	\N	sequence	3	SO	nucleic_acid	single_stranded_cDNA
SO:0000443	SO:0000348	\N	"An attribute to describe the kind of biological sequence." [SO:ke]	SO:0000757	"" []	2928366	\N	\N	sequence	4	SO	polymer_attribute	single_stranded_cDNA
SO:0000400	SO:0000443	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000757	"" []	4001682	\N	\N	sequence	5	SO	sequence_attribute	single_stranded_cDNA
SO:0000758	\N	\N	"" []	SO:0000758	"" []	45691	\N	\N	sequence	0	SO	double_stranded_cDNA	double_stranded_cDNA
SO:0000756	SO:0000758	\N	"DNA synthesized by reverse transcriptase using RNA as a template." [SO:ma]	SO:0000758	"" []	490358	\N	\N	sequence	1	SO	cDNA	double_stranded_cDNA
SO:0000352	SO:0000756	\N	"An attribute describing a sequence consisting of nucleobases bound to a repeating unit made of a 2-deoxy-D-ribose ring connected to a phosphate backbone." [RSC:cb]	SO:0000758	"" []	1072848	\N	\N	sequence	2	SO	DNA	double_stranded_cDNA
SO:0000348	SO:0000352	\N	"An attribute describing a sequence consisting of nucleobases bound to repeating units. The forms found in nature are deoxyribonucleic acid (DNA), where the repeating units are 2-deoxy-D-ribose rings connected to a phosphate backbone, and ribonucleic acid (RNA), where the repeating units are D-ribose rings connected to a phosphate backbone." [CHEBI:33696, RSC:cb]	SO:0000758	"" []	1903900	\N	\N	sequence	3	SO	nucleic_acid	double_stranded_cDNA
SO:0000443	SO:0000348	\N	"An attribute to describe the kind of biological sequence." [SO:ke]	SO:0000758	"" []	2928367	\N	\N	sequence	4	SO	polymer_attribute	double_stranded_cDNA
SO:0000400	SO:0000443	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000758	"" []	4001683	\N	\N	sequence	5	SO	sequence_attribute	double_stranded_cDNA
SO:0000766	\N	\N	"A tRNA sequence that has a pyrrolysine anticodon, and a 3' pyrrolysine binding region." [SO:ke]	SO:0000766	"A tRNA sequence that has a pyrrolysine anticodon, and a 3' pyrrolysine binding region." [SO:ke]	45692	\N	\N	sequence	0	SO	pyrrolysyl_tRNA	pyrrolysyl_tRNA
SO:0000253	SO:0000766	\N	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	SO:0000766	"A tRNA sequence that has a pyrrolysine anticodon, and a 3' pyrrolysine binding region." [SO:ke]	490359	\N	SOFA	sequence	1	SO	tRNA	pyrrolysyl_tRNA
SO:0000655	SO:0000253	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000766	"A tRNA sequence that has a pyrrolysine anticodon, and a 3' pyrrolysine binding region." [SO:ke]	1072849	SOFA	SOFA	sequence	2	SO	ncRNA	pyrrolysyl_tRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000766	"A tRNA sequence that has a pyrrolysine anticodon, and a 3' pyrrolysine binding region." [SO:ke]	1903901	SOFA	SOFA	sequence	3	SO	mature_transcript	pyrrolysyl_tRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000766	"A tRNA sequence that has a pyrrolysine anticodon, and a 3' pyrrolysine binding region." [SO:ke]	2928368	SOFA	SOFA	sequence	4	SO	transcript	pyrrolysyl_tRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000766	"A tRNA sequence that has a pyrrolysine anticodon, and a 3' pyrrolysine binding region." [SO:ke]	4001684	SOFA	SOFA	sequence	5	SO	gene_member_region	pyrrolysyl_tRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000766	"A tRNA sequence that has a pyrrolysine anticodon, and a 3' pyrrolysine binding region." [SO:ke]	4966180	SOFA	SOFA	sequence	6	SO	biological_region	pyrrolysyl_tRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000766	"A tRNA sequence that has a pyrrolysine anticodon, and a 3' pyrrolysine binding region." [SO:ke]	5741060	SOFA	SOFA	sequence	7	SO	region	pyrrolysyl_tRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000766	"A tRNA sequence that has a pyrrolysine anticodon, and a 3' pyrrolysine binding region." [SO:ke]	6310976	SOFA	SOFA	sequence	8	SO	sequence_feature	pyrrolysyl_tRNA
SO:0000768	\N	\N	"A plasmid that may integrate with a chromosome." [SO:ma]	SO:0000768	"A plasmid that may integrate with a chromosome." [SO:ma]	45693	\N	\N	sequence	0	SO	episome	episome
SO:0000155	SO:0000768	\N	"A self replicating, using the hosts cellular machinery, often circular nucleic acid molecule that is distinct from a chromosome in the organism." [SO:ma]	SO:0000768	"A plasmid that may integrate with a chromosome." [SO:ma]	490360	\N	\N	sequence	1	SO	plasmid	episome
SO:0001235	SO:0000155	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000768	"A plasmid that may integrate with a chromosome." [SO:ma]	1072850	\N	SOFA	sequence	2	SO	replicon	episome
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000768	"A plasmid that may integrate with a chromosome." [SO:ma]	1903902	SOFA	SOFA	sequence	3	SO	biological_region	episome
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000768	"A plasmid that may integrate with a chromosome." [SO:ma]	2928369	SOFA	SOFA	sequence	4	SO	region	episome
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000768	"A plasmid that may integrate with a chromosome." [SO:ma]	4001685	SOFA	SOFA	sequence	5	SO	sequence_feature	episome
SO:0000769	\N	\N	"The region of a two-piece tmRNA that bears the reading frame encoding the proteolysis tag. The tmRNA gene undergoes circular permutation in some groups of bacteria. Processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw, issn:1362-4962]	SO:0000769	"The region of a two-piece tmRNA that bears the reading frame encoding the proteolysis tag. The tmRNA gene undergoes circular permutation in some groups of bacteria. Processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw, issn:1362-4962]	45694	\N	\N	sequence	0	SO	tmRNA_coding_piece	tmRNA_coding_piece
SO:0000847	SO:0000769	\N	"A region of a tmRNA." [SO:cb]	SO:0000769	"The region of a two-piece tmRNA that bears the reading frame encoding the proteolysis tag. The tmRNA gene undergoes circular permutation in some groups of bacteria. Processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw, issn:1362-4962]	490361	\N	\N	sequence	1	SO	tmRNA_region	tmRNA_coding_piece
SO:0000584	SO:0000847	\N	"A tmRNA liberates a mRNA from a stalled ribosome. To accomplish this part of the tmRNA is used as a reading frame that ends in a translation stop signal. The broken mRNA is replaced in the ribosome by the tmRNA and translation of the tmRNA leads to addition of a proteolysis tag to the incomplete protein enabling recognition by a protease. Recently a number of permuted tmRNAs genes have been found encoded in two parts. TmRNAs have been identified in eubacteria and some chloroplasts but are absent from archeal and Eukaryote nuclear genomes." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00023]	SO:0000769	"The region of a two-piece tmRNA that bears the reading frame encoding the proteolysis tag. The tmRNA gene undergoes circular permutation in some groups of bacteria. Processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw, issn:1362-4962]	1072851	\N	\N	sequence	2	SO	tmRNA	tmRNA_coding_piece
SO:0000834	SO:0000847	\N	"A region of a mature transcript." [SO:ke]	SO:0000769	"The region of a two-piece tmRNA that bears the reading frame encoding the proteolysis tag. The tmRNA gene undergoes circular permutation in some groups of bacteria. Processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw, issn:1362-4962]	1072852	\N	SOFA	sequence	2	SO	mature_transcript_region	tmRNA_coding_piece
SO:0000370	SO:0000584	\N	"A non-coding RNA less than 200 nucleotides long, usually with a specific secondary structure, that acts to regulate gene expression. These include short ncRNAs such as piRNA, miRNA and siRNAs (among others)." [PMID:28541282, PomBase:al, SO:ma]	SO:0000769	"The region of a two-piece tmRNA that bears the reading frame encoding the proteolysis tag. The tmRNA gene undergoes circular permutation in some groups of bacteria. Processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw, issn:1362-4962]	1903903	\N	SOFA	sequence	3	SO	small_regulatory_ncRNA	tmRNA_coding_piece
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0000769	"The region of a two-piece tmRNA that bears the reading frame encoding the proteolysis tag. The tmRNA gene undergoes circular permutation in some groups of bacteria. Processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw, issn:1362-4962]	1903904	SOFA	SOFA	sequence	3	SO	transcript_region	tmRNA_coding_piece
SO:0000655	SO:0000370	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000769	"The region of a two-piece tmRNA that bears the reading frame encoding the proteolysis tag. The tmRNA gene undergoes circular permutation in some groups of bacteria. Processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw, issn:1362-4962]	2928370	SOFA	SOFA	sequence	4	SO	ncRNA	tmRNA_coding_piece
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000769	"The region of a two-piece tmRNA that bears the reading frame encoding the proteolysis tag. The tmRNA gene undergoes circular permutation in some groups of bacteria. Processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw, issn:1362-4962]	2928371	SOFA	SOFA	sequence	4	SO	transcript	tmRNA_coding_piece
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000769	"The region of a two-piece tmRNA that bears the reading frame encoding the proteolysis tag. The tmRNA gene undergoes circular permutation in some groups of bacteria. Processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw, issn:1362-4962]	2928372	SOFA	SOFA	sequence	4	SO	biological_region	tmRNA_coding_piece
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000769	"The region of a two-piece tmRNA that bears the reading frame encoding the proteolysis tag. The tmRNA gene undergoes circular permutation in some groups of bacteria. Processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw, issn:1362-4962]	4001686	SOFA	SOFA	sequence	5	SO	mature_transcript	tmRNA_coding_piece
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000769	"The region of a two-piece tmRNA that bears the reading frame encoding the proteolysis tag. The tmRNA gene undergoes circular permutation in some groups of bacteria. Processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw, issn:1362-4962]	5741061	SOFA	SOFA	sequence	7	SO	gene_member_region	tmRNA_coding_piece
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000769	"The region of a two-piece tmRNA that bears the reading frame encoding the proteolysis tag. The tmRNA gene undergoes circular permutation in some groups of bacteria. Processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw, issn:1362-4962]	6550268	SOFA	SOFA	sequence	9	SO	region	tmRNA_coding_piece
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000769	"The region of a two-piece tmRNA that bears the reading frame encoding the proteolysis tag. The tmRNA gene undergoes circular permutation in some groups of bacteria. Processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw, issn:1362-4962]	4966181	SOFA	SOFA	sequence	6	SO	transcript	tmRNA_coding_piece
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000769	"The region of a two-piece tmRNA that bears the reading frame encoding the proteolysis tag. The tmRNA gene undergoes circular permutation in some groups of bacteria. Processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw, issn:1362-4962]	5996402	SOFA	SOFA	sequence	8	SO	biological_region	tmRNA_coding_piece
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000769	"The region of a two-piece tmRNA that bears the reading frame encoding the proteolysis tag. The tmRNA gene undergoes circular permutation in some groups of bacteria. Processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw, issn:1362-4962]	6807577	SOFA	SOFA	sequence	10	SO	sequence_feature	tmRNA_coding_piece
SO:0000770	\N	\N	"The acceptor region of a two-piece tmRNA that when mature is charged at its 3' end with alanine. The tmRNA gene undergoes circular permutation in some groups of bacteria; processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw]	SO:0000770	"The acceptor region of a two-piece tmRNA that when mature is charged at its 3' end with alanine. The tmRNA gene undergoes circular permutation in some groups of bacteria; processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw]	45695	\N	\N	sequence	0	SO	tmRNA_acceptor_piece	tmRNA_acceptor_piece
SO:0000847	SO:0000770	\N	"A region of a tmRNA." [SO:cb]	SO:0000770	"The acceptor region of a two-piece tmRNA that when mature is charged at its 3' end with alanine. The tmRNA gene undergoes circular permutation in some groups of bacteria; processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw]	490362	\N	\N	sequence	1	SO	tmRNA_region	tmRNA_acceptor_piece
SO:0000584	SO:0000847	\N	"A tmRNA liberates a mRNA from a stalled ribosome. To accomplish this part of the tmRNA is used as a reading frame that ends in a translation stop signal. The broken mRNA is replaced in the ribosome by the tmRNA and translation of the tmRNA leads to addition of a proteolysis tag to the incomplete protein enabling recognition by a protease. Recently a number of permuted tmRNAs genes have been found encoded in two parts. TmRNAs have been identified in eubacteria and some chloroplasts but are absent from archeal and Eukaryote nuclear genomes." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00023]	SO:0000770	"The acceptor region of a two-piece tmRNA that when mature is charged at its 3' end with alanine. The tmRNA gene undergoes circular permutation in some groups of bacteria; processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw]	1072853	\N	\N	sequence	2	SO	tmRNA	tmRNA_acceptor_piece
SO:0000834	SO:0000847	\N	"A region of a mature transcript." [SO:ke]	SO:0000770	"The acceptor region of a two-piece tmRNA that when mature is charged at its 3' end with alanine. The tmRNA gene undergoes circular permutation in some groups of bacteria; processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw]	1072854	\N	SOFA	sequence	2	SO	mature_transcript_region	tmRNA_acceptor_piece
SO:0000370	SO:0000584	\N	"A non-coding RNA less than 200 nucleotides long, usually with a specific secondary structure, that acts to regulate gene expression. These include short ncRNAs such as piRNA, miRNA and siRNAs (among others)." [PMID:28541282, PomBase:al, SO:ma]	SO:0000770	"The acceptor region of a two-piece tmRNA that when mature is charged at its 3' end with alanine. The tmRNA gene undergoes circular permutation in some groups of bacteria; processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw]	1903905	\N	SOFA	sequence	3	SO	small_regulatory_ncRNA	tmRNA_acceptor_piece
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0000770	"The acceptor region of a two-piece tmRNA that when mature is charged at its 3' end with alanine. The tmRNA gene undergoes circular permutation in some groups of bacteria; processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw]	1903906	SOFA	SOFA	sequence	3	SO	transcript_region	tmRNA_acceptor_piece
SO:0000655	SO:0000370	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000770	"The acceptor region of a two-piece tmRNA that when mature is charged at its 3' end with alanine. The tmRNA gene undergoes circular permutation in some groups of bacteria; processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw]	2928373	SOFA	SOFA	sequence	4	SO	ncRNA	tmRNA_acceptor_piece
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000770	"The acceptor region of a two-piece tmRNA that when mature is charged at its 3' end with alanine. The tmRNA gene undergoes circular permutation in some groups of bacteria; processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw]	2928374	SOFA	SOFA	sequence	4	SO	transcript	tmRNA_acceptor_piece
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000770	"The acceptor region of a two-piece tmRNA that when mature is charged at its 3' end with alanine. The tmRNA gene undergoes circular permutation in some groups of bacteria; processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw]	2928375	SOFA	SOFA	sequence	4	SO	biological_region	tmRNA_acceptor_piece
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000770	"The acceptor region of a two-piece tmRNA that when mature is charged at its 3' end with alanine. The tmRNA gene undergoes circular permutation in some groups of bacteria; processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw]	4001689	SOFA	SOFA	sequence	5	SO	mature_transcript	tmRNA_acceptor_piece
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000770	"The acceptor region of a two-piece tmRNA that when mature is charged at its 3' end with alanine. The tmRNA gene undergoes circular permutation in some groups of bacteria; processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw]	5741063	SOFA	SOFA	sequence	7	SO	gene_member_region	tmRNA_acceptor_piece
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000770	"The acceptor region of a two-piece tmRNA that when mature is charged at its 3' end with alanine. The tmRNA gene undergoes circular permutation in some groups of bacteria; processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw]	6550269	SOFA	SOFA	sequence	9	SO	region	tmRNA_acceptor_piece
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000770	"The acceptor region of a two-piece tmRNA that when mature is charged at its 3' end with alanine. The tmRNA gene undergoes circular permutation in some groups of bacteria; processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw]	4966184	SOFA	SOFA	sequence	6	SO	transcript	tmRNA_acceptor_piece
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000770	"The acceptor region of a two-piece tmRNA that when mature is charged at its 3' end with alanine. The tmRNA gene undergoes circular permutation in some groups of bacteria; processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw]	5996404	SOFA	SOFA	sequence	8	SO	biological_region	tmRNA_acceptor_piece
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000770	"The acceptor region of a two-piece tmRNA that when mature is charged at its 3' end with alanine. The tmRNA gene undergoes circular permutation in some groups of bacteria; processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together." [doi:10.1093/nar/gkh795, Indiana:kw]	6807578	SOFA	SOFA	sequence	10	SO	sequence_feature	tmRNA_acceptor_piece
SO:0000771	\N	\N	"A quantitative trait locus (QTL) is a polymorphic locus which contains alleles that differentially affect the expression of a continuously distributed phenotypic trait. Usually it is a marker described by statistical association to quantitative variation in the particular phenotypic trait that is thought to be controlled by the cumulative action of alleles at multiple loci." [http://rgd.mcw.edu/tu/qtls/]	SO:0000771	"A quantitative trait locus (QTL) is a polymorphic locus which contains alleles that differentially affect the expression of a continuously distributed phenotypic trait. Usually it is a marker described by statistical association to quantitative variation in the particular phenotypic trait that is thought to be controlled by the cumulative action of alleles at multiple loci." [http://rgd.mcw.edu/tu/qtls/]	45696	\N	\N	sequence	0	SO	QTL	QTL
SO:0001411	SO:0000771	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000771	"A quantitative trait locus (QTL) is a polymorphic locus which contains alleles that differentially affect the expression of a continuously distributed phenotypic trait. Usually it is a marker described by statistical association to quantitative variation in the particular phenotypic trait that is thought to be controlled by the cumulative action of alleles at multiple loci." [http://rgd.mcw.edu/tu/qtls/]	490363	\N	SOFA	sequence	1	SO	biological_region	QTL
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000771	"A quantitative trait locus (QTL) is a polymorphic locus which contains alleles that differentially affect the expression of a continuously distributed phenotypic trait. Usually it is a marker described by statistical association to quantitative variation in the particular phenotypic trait that is thought to be controlled by the cumulative action of alleles at multiple loci." [http://rgd.mcw.edu/tu/qtls/]	1072855	SOFA	SOFA	sequence	2	SO	region	QTL
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000771	"A quantitative trait locus (QTL) is a polymorphic locus which contains alleles that differentially affect the expression of a continuously distributed phenotypic trait. Usually it is a marker described by statistical association to quantitative variation in the particular phenotypic trait that is thought to be controlled by the cumulative action of alleles at multiple loci." [http://rgd.mcw.edu/tu/qtls/]	1903907	SOFA	SOFA	sequence	3	SO	sequence_feature	QTL
SO:0000772	\N	\N	"A genomic island is an integrated mobile genetic element, characterized by size (over 10 Kb). It that has features that suggest a foreign origin. These can include nucleotide distribution (oligonucleotides signature, CG content etc.) that differs from the bulk of the chromosome and/or genes suggesting DNA mobility." [Phigo:at, SO:ke]	SO:0000772	"A genomic island is an integrated mobile genetic element, characterized by size (over 10 Kb). It that has features that suggest a foreign origin. These can include nucleotide distribution (oligonucleotides signature, CG content etc.) that differs from the bulk of the chromosome and/or genes suggesting DNA mobility." [Phigo:at, SO:ke]	45697	\N	\N	sequence	0	SO	genomic_island	genomic_island
SO:0001039	SO:0000772	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000772	"A genomic island is an integrated mobile genetic element, characterized by size (over 10 Kb). It that has features that suggest a foreign origin. These can include nucleotide distribution (oligonucleotides signature, CG content etc.) that differs from the bulk of the chromosome and/or genes suggesting DNA mobility." [Phigo:at, SO:ke]	490364	\N	SOFA	sequence	1	SO	integrated_mobile_genetic_element	genomic_island
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000772	"A genomic island is an integrated mobile genetic element, characterized by size (over 10 Kb). It that has features that suggest a foreign origin. These can include nucleotide distribution (oligonucleotides signature, CG content etc.) that differs from the bulk of the chromosome and/or genes suggesting DNA mobility." [Phigo:at, SO:ke]	1072856	SOFA	SOFA	sequence	2	SO	mobile_genetic_element	genomic_island
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000772	"A genomic island is an integrated mobile genetic element, characterized by size (over 10 Kb). It that has features that suggest a foreign origin. These can include nucleotide distribution (oligonucleotides signature, CG content etc.) that differs from the bulk of the chromosome and/or genes suggesting DNA mobility." [Phigo:at, SO:ke]	1903908	SOFA	SOFA	sequence	3	SO	biological_region	genomic_island
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000772	"A genomic island is an integrated mobile genetic element, characterized by size (over 10 Kb). It that has features that suggest a foreign origin. These can include nucleotide distribution (oligonucleotides signature, CG content etc.) that differs from the bulk of the chromosome and/or genes suggesting DNA mobility." [Phigo:at, SO:ke]	2928376	SOFA	SOFA	sequence	4	SO	region	genomic_island
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000772	"A genomic island is an integrated mobile genetic element, characterized by size (over 10 Kb). It that has features that suggest a foreign origin. These can include nucleotide distribution (oligonucleotides signature, CG content etc.) that differs from the bulk of the chromosome and/or genes suggesting DNA mobility." [Phigo:at, SO:ke]	4001692	SOFA	SOFA	sequence	5	SO	sequence_feature	genomic_island
SO:0000773	\N	\N	"Mobile genetic elements that contribute to rapid changes in virulence potential. They are present on the genomes of pathogenic strains but absent from the genomes of non pathogenic members of the same or related species." [SO:ke]	SO:0000773	"Mobile genetic elements that contribute to rapid changes in virulence potential. They are present on the genomes of pathogenic strains but absent from the genomes of non pathogenic members of the same or related species." [SO:ke]	45698	\N	\N	sequence	0	SO	pathogenic_island	pathogenic_island
SO:0000772	SO:0000773	\N	"A genomic island is an integrated mobile genetic element, characterized by size (over 10 Kb). It that has features that suggest a foreign origin. These can include nucleotide distribution (oligonucleotides signature, CG content etc.) that differs from the bulk of the chromosome and/or genes suggesting DNA mobility." [Phigo:at, SO:ke]	SO:0000773	"Mobile genetic elements that contribute to rapid changes in virulence potential. They are present on the genomes of pathogenic strains but absent from the genomes of non pathogenic members of the same or related species." [SO:ke]	490365	\N	\N	sequence	1	SO	genomic_island	pathogenic_island
SO:0001039	SO:0000772	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000773	"Mobile genetic elements that contribute to rapid changes in virulence potential. They are present on the genomes of pathogenic strains but absent from the genomes of non pathogenic members of the same or related species." [SO:ke]	1072857	\N	SOFA	sequence	2	SO	integrated_mobile_genetic_element	pathogenic_island
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000773	"Mobile genetic elements that contribute to rapid changes in virulence potential. They are present on the genomes of pathogenic strains but absent from the genomes of non pathogenic members of the same or related species." [SO:ke]	1903909	SOFA	SOFA	sequence	3	SO	mobile_genetic_element	pathogenic_island
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000773	"Mobile genetic elements that contribute to rapid changes in virulence potential. They are present on the genomes of pathogenic strains but absent from the genomes of non pathogenic members of the same or related species." [SO:ke]	2928377	SOFA	SOFA	sequence	4	SO	biological_region	pathogenic_island
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000773	"Mobile genetic elements that contribute to rapid changes in virulence potential. They are present on the genomes of pathogenic strains but absent from the genomes of non pathogenic members of the same or related species." [SO:ke]	4001693	SOFA	SOFA	sequence	5	SO	region	pathogenic_island
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000773	"Mobile genetic elements that contribute to rapid changes in virulence potential. They are present on the genomes of pathogenic strains but absent from the genomes of non pathogenic members of the same or related species." [SO:ke]	4966187	SOFA	SOFA	sequence	6	SO	sequence_feature	pathogenic_island
SO:0000774	\N	\N	"A transmissible element containing genes involved in metabolism, analogous to the pathogenicity islands of gram negative bacteria." [SO:ke]	SO:0000774	"A transmissible element containing genes involved in metabolism, analogous to the pathogenicity islands of gram negative bacteria." [SO:ke]	45699	\N	\N	sequence	0	SO	metabolic_island	metabolic_island
SO:0000772	SO:0000774	\N	"A genomic island is an integrated mobile genetic element, characterized by size (over 10 Kb). It that has features that suggest a foreign origin. These can include nucleotide distribution (oligonucleotides signature, CG content etc.) that differs from the bulk of the chromosome and/or genes suggesting DNA mobility." [Phigo:at, SO:ke]	SO:0000774	"A transmissible element containing genes involved in metabolism, analogous to the pathogenicity islands of gram negative bacteria." [SO:ke]	490366	\N	\N	sequence	1	SO	genomic_island	metabolic_island
SO:0001039	SO:0000772	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000774	"A transmissible element containing genes involved in metabolism, analogous to the pathogenicity islands of gram negative bacteria." [SO:ke]	1072858	\N	SOFA	sequence	2	SO	integrated_mobile_genetic_element	metabolic_island
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000774	"A transmissible element containing genes involved in metabolism, analogous to the pathogenicity islands of gram negative bacteria." [SO:ke]	1903910	SOFA	SOFA	sequence	3	SO	mobile_genetic_element	metabolic_island
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000774	"A transmissible element containing genes involved in metabolism, analogous to the pathogenicity islands of gram negative bacteria." [SO:ke]	2928378	SOFA	SOFA	sequence	4	SO	biological_region	metabolic_island
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000774	"A transmissible element containing genes involved in metabolism, analogous to the pathogenicity islands of gram negative bacteria." [SO:ke]	4001694	SOFA	SOFA	sequence	5	SO	region	metabolic_island
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000774	"A transmissible element containing genes involved in metabolism, analogous to the pathogenicity islands of gram negative bacteria." [SO:ke]	4966188	SOFA	SOFA	sequence	6	SO	sequence_feature	metabolic_island
SO:0000775	\N	\N	"An adaptive island is a genomic island that provides an adaptive advantage to the host." [SO:ke]	SO:0000775	"An adaptive island is a genomic island that provides an adaptive advantage to the host." [SO:ke]	45700	\N	\N	sequence	0	SO	adaptive_island	adaptive_island
SO:0000772	SO:0000775	\N	"A genomic island is an integrated mobile genetic element, characterized by size (over 10 Kb). It that has features that suggest a foreign origin. These can include nucleotide distribution (oligonucleotides signature, CG content etc.) that differs from the bulk of the chromosome and/or genes suggesting DNA mobility." [Phigo:at, SO:ke]	SO:0000775	"An adaptive island is a genomic island that provides an adaptive advantage to the host." [SO:ke]	490367	\N	\N	sequence	1	SO	genomic_island	adaptive_island
SO:0001039	SO:0000772	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000775	"An adaptive island is a genomic island that provides an adaptive advantage to the host." [SO:ke]	1072859	\N	SOFA	sequence	2	SO	integrated_mobile_genetic_element	adaptive_island
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000775	"An adaptive island is a genomic island that provides an adaptive advantage to the host." [SO:ke]	1903911	SOFA	SOFA	sequence	3	SO	mobile_genetic_element	adaptive_island
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000775	"An adaptive island is a genomic island that provides an adaptive advantage to the host." [SO:ke]	2928379	SOFA	SOFA	sequence	4	SO	biological_region	adaptive_island
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000775	"An adaptive island is a genomic island that provides an adaptive advantage to the host." [SO:ke]	4001695	SOFA	SOFA	sequence	5	SO	region	adaptive_island
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000775	"An adaptive island is a genomic island that provides an adaptive advantage to the host." [SO:ke]	4966189	SOFA	SOFA	sequence	6	SO	sequence_feature	adaptive_island
SO:0000776	\N	\N	"A transmissible element containing genes involved in symbiosis, analogous to the pathogenicity islands of gram negative bacteria." [SO:ke]	SO:0000776	"A transmissible element containing genes involved in symbiosis, analogous to the pathogenicity islands of gram negative bacteria." [SO:ke]	45701	\N	\N	sequence	0	SO	symbiosis_island	symbiosis_island
SO:0000772	SO:0000776	\N	"A genomic island is an integrated mobile genetic element, characterized by size (over 10 Kb). It that has features that suggest a foreign origin. These can include nucleotide distribution (oligonucleotides signature, CG content etc.) that differs from the bulk of the chromosome and/or genes suggesting DNA mobility." [Phigo:at, SO:ke]	SO:0000776	"A transmissible element containing genes involved in symbiosis, analogous to the pathogenicity islands of gram negative bacteria." [SO:ke]	490368	\N	\N	sequence	1	SO	genomic_island	symbiosis_island
SO:0001039	SO:0000772	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000776	"A transmissible element containing genes involved in symbiosis, analogous to the pathogenicity islands of gram negative bacteria." [SO:ke]	1072860	\N	SOFA	sequence	2	SO	integrated_mobile_genetic_element	symbiosis_island
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000776	"A transmissible element containing genes involved in symbiosis, analogous to the pathogenicity islands of gram negative bacteria." [SO:ke]	1903912	SOFA	SOFA	sequence	3	SO	mobile_genetic_element	symbiosis_island
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000776	"A transmissible element containing genes involved in symbiosis, analogous to the pathogenicity islands of gram negative bacteria." [SO:ke]	2928380	SOFA	SOFA	sequence	4	SO	biological_region	symbiosis_island
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000776	"A transmissible element containing genes involved in symbiosis, analogous to the pathogenicity islands of gram negative bacteria." [SO:ke]	4001696	SOFA	SOFA	sequence	5	SO	region	symbiosis_island
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000776	"A transmissible element containing genes involved in symbiosis, analogous to the pathogenicity islands of gram negative bacteria." [SO:ke]	4966190	SOFA	SOFA	sequence	6	SO	sequence_feature	symbiosis_island
SO:0000777	\N	SOFA	"A non functional descendant of an rRNA." [SO:ke]	SO:0000777	"A non functional descendant of an rRNA." [SO:ke]	45702	\N	SOFA	sequence	0	SO	pseudogenic_rRNA	pseudogenic_rRNA
SO:0000516	SO:0000777	SOFA	"A non functional descendant of a transcript, part of a pseudogene." [SO:ke]	SO:0000777	"A non functional descendant of an rRNA." [SO:ke]	490369	SOFA	\N	sequence	1	SO	pseudogenic_transcript	pseudogenic_rRNA
SO:0000336	SO:0000516	SOFA	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	SO:0000777	"A non functional descendant of an rRNA." [SO:ke]	1072861	\N	SOFA	sequence	2	SO	pseudogene	pseudogenic_rRNA
SO:0000462	SO:0000516	SOFA	"A non-functional descendant of a functional entity." [SO:cjm]	SO:0000777	"A non functional descendant of an rRNA." [SO:ke]	1072862	\N	SOFA	sequence	2	SO	pseudogenic_region	pseudogenic_rRNA
SO:0001411	SO:0000336	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000777	"A non functional descendant of an rRNA." [SO:ke]	1903913	SOFA	SOFA	sequence	3	SO	biological_region	pseudogenic_rRNA
SO:0001411	SO:0000462	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000777	"A non functional descendant of an rRNA." [SO:ke]	1903914	SOFA	SOFA	sequence	3	SO	biological_region	pseudogenic_rRNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000777	"A non functional descendant of an rRNA." [SO:ke]	2928381	SOFA	SOFA	sequence	4	SO	region	pseudogenic_rRNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000777	"A non functional descendant of an rRNA." [SO:ke]	4001697	SOFA	SOFA	sequence	5	SO	sequence_feature	pseudogenic_rRNA
SO:0000778	\N	SOFA	"A non functional descendent of a tRNA." [SO:ke]	SO:0000778	"A non functional descendent of a tRNA." [SO:ke]	45703	\N	SOFA	sequence	0	SO	pseudogenic_tRNA	pseudogenic_tRNA
SO:0000516	SO:0000778	SOFA	"A non functional descendant of a transcript, part of a pseudogene." [SO:ke]	SO:0000778	"A non functional descendent of a tRNA." [SO:ke]	490370	SOFA	\N	sequence	1	SO	pseudogenic_transcript	pseudogenic_tRNA
SO:0000336	SO:0000516	SOFA	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	SO:0000778	"A non functional descendent of a tRNA." [SO:ke]	1072863	\N	SOFA	sequence	2	SO	pseudogene	pseudogenic_tRNA
SO:0000462	SO:0000516	SOFA	"A non-functional descendant of a functional entity." [SO:cjm]	SO:0000778	"A non functional descendent of a tRNA." [SO:ke]	1072864	\N	SOFA	sequence	2	SO	pseudogenic_region	pseudogenic_tRNA
SO:0001411	SO:0000336	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000778	"A non functional descendent of a tRNA." [SO:ke]	1903915	SOFA	SOFA	sequence	3	SO	biological_region	pseudogenic_tRNA
SO:0001411	SO:0000462	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000778	"A non functional descendent of a tRNA." [SO:ke]	1903916	SOFA	SOFA	sequence	3	SO	biological_region	pseudogenic_tRNA
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000778	"A non functional descendent of a tRNA." [SO:ke]	2928382	SOFA	SOFA	sequence	4	SO	region	pseudogenic_tRNA
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000778	"A non functional descendent of a tRNA." [SO:ke]	4001698	SOFA	SOFA	sequence	5	SO	sequence_feature	pseudogenic_tRNA
SO:0000779	\N	\N	"An episome that is engineered." [SO:xp]	SO:0000779	"An episome that is engineered." [SO:xp]	45704	\N	\N	sequence	0	SO	engineered_episome	engineered_episome
SO:0000637	SO:0000779	\N	"A plasmid that is engineered." [SO:xp]	SO:0000779	"An episome that is engineered." [SO:xp]	490371	\N	\N	sequence	1	SO	engineered_plasmid	engineered_episome
SO:0000768	SO:0000779	\N	"A plasmid that may integrate with a chromosome." [SO:ma]	SO:0000779	"An episome that is engineered." [SO:xp]	490372	\N	\N	sequence	1	SO	episome	engineered_episome
SO:0000155	SO:0000637	\N	"A self replicating, using the hosts cellular machinery, often circular nucleic acid molecule that is distinct from a chromosome in the organism." [SO:ma]	SO:0000779	"An episome that is engineered." [SO:xp]	1072865	\N	\N	sequence	2	SO	plasmid	engineered_episome
SO:0000804	SO:0000637	\N	"A region that is engineered." [SO:xp]	SO:0000779	"An episome that is engineered." [SO:xp]	1072866	\N	\N	sequence	2	SO	engineered_region	engineered_episome
SO:0000155	SO:0000768	\N	"A self replicating, using the hosts cellular machinery, often circular nucleic acid molecule that is distinct from a chromosome in the organism." [SO:ma]	SO:0000779	"An episome that is engineered." [SO:xp]	1072867	\N	\N	sequence	2	SO	plasmid	engineered_episome
SO:0001235	SO:0000155	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000779	"An episome that is engineered." [SO:xp]	1903917	\N	SOFA	sequence	3	SO	replicon	engineered_episome
SO:0001409	SO:0000804	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000779	"An episome that is engineered." [SO:xp]	1903918	\N	SOFA	sequence	3	SO	biomaterial_region	engineered_episome
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000779	"An episome that is engineered." [SO:xp]	2928383	SOFA	SOFA	sequence	4	SO	biological_region	engineered_episome
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000779	"An episome that is engineered." [SO:xp]	2928384	SOFA	SOFA	sequence	4	SO	region	engineered_episome
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000779	"An episome that is engineered." [SO:xp]	4001699	SOFA	SOFA	sequence	5	SO	region	engineered_episome
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000779	"An episome that is engineered." [SO:xp]	4966191	SOFA	SOFA	sequence	6	SO	sequence_feature	engineered_episome
SO:0000781	\N	\N	"Attribute describing sequence that has been integrated with foreign sequence." [SO:ke]	SO:0000781	"Attribute describing sequence that has been integrated with foreign sequence." [SO:ke]	45705	\N	\N	sequence	0	SO	transgenic	transgenic
SO:0000733	SO:0000781	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000781	"Attribute describing sequence that has been integrated with foreign sequence." [SO:ke]	490373	\N	\N	sequence	1	SO	feature_attribute	transgenic
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000781	"Attribute describing sequence that has been integrated with foreign sequence." [SO:ke]	1072868	\N	\N	sequence	2	SO	sequence_attribute	transgenic
SO:0000782	\N	\N	"An attribute describing a feature that occurs in nature." [SO:ke]	SO:0000782	"An attribute describing a feature that occurs in nature." [SO:ke]	45706	\N	\N	sequence	0	SO	natural	natural
SO:0000733	SO:0000782	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000782	"An attribute describing a feature that occurs in nature." [SO:ke]	490374	\N	\N	sequence	1	SO	feature_attribute	natural
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000782	"An attribute describing a feature that occurs in nature." [SO:ke]	1072869	\N	\N	sequence	2	SO	sequence_attribute	natural
SO:0000783	\N	\N	"An attribute to describe a region that was modified in vitro." [SO:ke]	SO:0000783	"An attribute to describe a region that was modified in vitro." [SO:ke]	45707	\N	\N	sequence	0	SO	engineered	engineered
SO:0000733	SO:0000783	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000783	"An attribute to describe a region that was modified in vitro." [SO:ke]	490375	\N	\N	sequence	1	SO	feature_attribute	engineered
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000783	"An attribute to describe a region that was modified in vitro." [SO:ke]	1072870	\N	\N	sequence	2	SO	sequence_attribute	engineered
SO:0000784	\N	\N	"An attribute to describe a region from another species." [SO:ke]	SO:0000784	"An attribute to describe a region from another species." [SO:ke]	45708	\N	\N	sequence	0	SO	foreign	foreign
SO:0000733	SO:0000784	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000784	"An attribute to describe a region from another species." [SO:ke]	490376	\N	\N	sequence	1	SO	feature_attribute	foreign
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000784	"An attribute to describe a region from another species." [SO:ke]	1072871	\N	\N	sequence	2	SO	sequence_attribute	foreign
SO:0000785	\N	\N	"" []	SO:0000785	"" []	45709	\N	\N	sequence	0	SO	cloned_region	cloned_region
SO:0000695	SO:0000785	\N	"A sequence used in experiment." [SO:ke]	SO:0000785	"" []	490377	\N	SOFA	sequence	1	SO	reagent	cloned_region
SO:0000753	SO:0000785	\N	"The region of sequence that has been inserted and is being propagated by the clone." [SO:ke]	SO:0000785	"" []	490378	\N	SOFA	sequence	1	SO	clone_insert	cloned_region
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000785	"" []	2928386	SOFA	SOFA	sequence	4	SO	biomaterial_region	cloned_region
SO:0000151	SO:0000753	\N	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0000785	"" []	1072873	SOFA	SOFA	sequence	2	SO	clone	cloned_region
SO:0000695	SO:0000753	\N	"A sequence used in experiment." [SO:ke]	SO:0000785	"" []	1072874	SOFA	SOFA	sequence	2	SO	reagent	cloned_region
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000785	"" []	2999120	SOFA	SOFA	sequence	5	SO	region	cloned_region
SO:0000695	SO:0000151	\N	"A sequence used in experiment." [SO:ke]	SO:0000785	"" []	1903920	SOFA	SOFA	sequence	3	SO	reagent	cloned_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000785	"" []	4132313	SOFA	SOFA	sequence	6	SO	sequence_feature	cloned_region
SO:0000789	\N	\N	"An attribute to describe a feature that has been proven." [SO:ke]	SO:0000789	"An attribute to describe a feature that has been proven." [SO:ke]	45710	\N	\N	sequence	0	SO	validated	validated
SO:0000905	SO:0000789	\N	"An attribute describing the status of a feature, based on the available evidence." [SO:ke]	SO:0000789	"An attribute to describe a feature that has been proven." [SO:ke]	490379	\N	\N	sequence	1	SO	status	validated
SO:0000733	SO:0000905	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000789	"An attribute to describe a feature that has been proven." [SO:ke]	1072875	\N	\N	sequence	2	SO	feature_attribute	validated
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000789	"An attribute to describe a feature that has been proven." [SO:ke]	1903922	\N	\N	sequence	3	SO	sequence_attribute	validated
SO:0000790	\N	\N	"An attribute describing a feature that is invalidated." [SO:ke]	SO:0000790	"An attribute describing a feature that is invalidated." [SO:ke]	45711	\N	\N	sequence	0	SO	invalidated	invalidated
SO:0000905	SO:0000790	\N	"An attribute describing the status of a feature, based on the available evidence." [SO:ke]	SO:0000790	"An attribute describing a feature that is invalidated." [SO:ke]	490380	\N	\N	sequence	1	SO	status	invalidated
SO:0000733	SO:0000905	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000790	"An attribute describing a feature that is invalidated." [SO:ke]	1072876	\N	\N	sequence	2	SO	feature_attribute	invalidated
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000790	"An attribute describing a feature that is invalidated." [SO:ke]	1903923	\N	\N	sequence	3	SO	sequence_attribute	invalidated
SO:0000794	\N	\N	"A rescue region that is engineered." [SO:xp]	SO:0000794	"A rescue region that is engineered." [SO:xp]	45712	\N	\N	sequence	0	SO	engineered_rescue_region	engineered_rescue_region
SO:0000411	SO:0000794	\N	"A region that rescues." [SO:xp]	SO:0000794	"A rescue region that is engineered." [SO:xp]	490381	\N	\N	sequence	1	SO	rescue_region	engineered_rescue_region
SO:0000804	SO:0000794	\N	"A region that is engineered." [SO:xp]	SO:0000794	"A rescue region that is engineered." [SO:xp]	490382	\N	\N	sequence	1	SO	engineered_region	engineered_rescue_region
SO:0000695	SO:0000411	\N	"A sequence used in experiment." [SO:ke]	SO:0000794	"A rescue region that is engineered." [SO:xp]	1072877	\N	SOFA	sequence	2	SO	reagent	engineered_rescue_region
SO:0001409	SO:0000804	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000794	"A rescue region that is engineered." [SO:xp]	1072878	\N	SOFA	sequence	2	SO	biomaterial_region	engineered_rescue_region
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000794	"A rescue region that is engineered." [SO:xp]	1903924	SOFA	SOFA	sequence	3	SO	biomaterial_region	engineered_rescue_region
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000794	"A rescue region that is engineered." [SO:xp]	2928387	SOFA	SOFA	sequence	4	SO	region	engineered_rescue_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000794	"A rescue region that is engineered." [SO:xp]	3173897	SOFA	SOFA	sequence	5	SO	sequence_feature	engineered_rescue_region
SO:0000795	\N	\N	"A mini_gene that rescues." [SO:xp]	SO:0000795	"A mini_gene that rescues." [SO:xp]	45713	\N	\N	sequence	0	SO	rescue_mini_gene	rescue_mini_gene
SO:0000815	SO:0000795	\N	"By definition, minigenes are short open-reading frames (ORF), usually encoding approximately 9 to 20 amino acids, which are expressed in vivo (as distinct from being synthesized as peptide or protein ex vivo and subsequently injected). The in vivo synthesis confers a distinct advantage: the expressed sequences can enter both antigen presentation pathways, MHC I (inducing CD8+ T- cells, which are usually cytotoxic T-lymphocytes (CTL)) and MHC II (inducing CD4+ T-cells, usually 'T-helpers' (Th)); and can encounter B-cells, inducing antibody responses. Three main vector approaches have been used to deliver minigenes: viral vectors, bacterial vectors and plasmid DNA." [PMID:15992143]	SO:0000795	"A mini_gene that rescues." [SO:xp]	490383	\N	\N	sequence	1	SO	mini_gene	rescue_mini_gene
SO:0000236	SO:0000815	\N	"The in-frame interval between the stop codons of a reading frame which when read as sequential triplets, has the potential of encoding a sequential string of amino acids. TER(NNN)nTER." [SGD:rb, SO:ma]	SO:0000795	"A mini_gene that rescues." [SO:xp]	1072879	\N	SOFA	sequence	2	SO	ORF	rescue_mini_gene
SO:0000717	SO:0000236	\N	"A nucleic acid sequence that when read as sequential triplets, has the potential of encoding a sequential string of amino acids. It need not contain the start or stop codon." [SGD:rb]	SO:0000795	"A mini_gene that rescues." [SO:xp]	1903926	SOFA	SOFA	sequence	3	SO	reading_frame	rescue_mini_gene
SO:0001410	SO:0000717	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000795	"A mini_gene that rescues." [SO:xp]	2928389	SOFA	SOFA	sequence	4	SO	experimental_feature	rescue_mini_gene
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000795	"A mini_gene that rescues." [SO:xp]	4001701	SOFA	SOFA	sequence	5	SO	region	rescue_mini_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000795	"A mini_gene that rescues." [SO:xp]	4966192	SOFA	SOFA	sequence	6	SO	sequence_feature	rescue_mini_gene
SO:0000796	\N	\N	"TE that has been modified in vitro, including insertion of DNA derived from a source other than the originating TE." [FB:mc]	SO:0000796	"TE that has been modified in vitro, including insertion of DNA derived from a source other than the originating TE." [FB:mc]	45714	\N	\N	sequence	0	SO	transgenic_transposable_element	transgenic_transposable_element
SO:0000101	SO:0000796	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000796	"TE that has been modified in vitro, including insertion of DNA derived from a source other than the originating TE." [FB:mc]	490384	\N	SOFA	sequence	1	SO	transposable_element	transgenic_transposable_element
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000796	"TE that has been modified in vitro, including insertion of DNA derived from a source other than the originating TE." [FB:mc]	1072880	SOFA	SOFA	sequence	2	SO	integrated_mobile_genetic_element	transgenic_transposable_element
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000796	"TE that has been modified in vitro, including insertion of DNA derived from a source other than the originating TE." [FB:mc]	1903927	SOFA	SOFA	sequence	3	SO	mobile_genetic_element	transgenic_transposable_element
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000796	"TE that has been modified in vitro, including insertion of DNA derived from a source other than the originating TE." [FB:mc]	2928390	SOFA	SOFA	sequence	4	SO	biological_region	transgenic_transposable_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000796	"TE that has been modified in vitro, including insertion of DNA derived from a source other than the originating TE." [FB:mc]	4001702	SOFA	SOFA	sequence	5	SO	region	transgenic_transposable_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000796	"TE that has been modified in vitro, including insertion of DNA derived from a source other than the originating TE." [FB:mc]	4966193	SOFA	SOFA	sequence	6	SO	sequence_feature	transgenic_transposable_element
SO:0000797	\N	\N	"TE that exists (or existed) in nature." [FB:mc]	SO:0000797	"TE that exists (or existed) in nature." [FB:mc]	45715	\N	\N	sequence	0	SO	natural_transposable_element	natural_transposable_element
SO:0000101	SO:0000797	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000797	"TE that exists (or existed) in nature." [FB:mc]	490385	\N	SOFA	sequence	1	SO	transposable_element	natural_transposable_element
SO:0001038	SO:0000797	\N	"An MGE that is not integrated into the host chromosome." [SO:ke]	SO:0000797	"TE that exists (or existed) in nature." [FB:mc]	490386	\N	\N	sequence	1	SO	extrachromosomal_mobile_genetic_element	natural_transposable_element
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000797	"TE that exists (or existed) in nature." [FB:mc]	1072881	SOFA	SOFA	sequence	2	SO	integrated_mobile_genetic_element	natural_transposable_element
SO:0001037	SO:0001038	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000797	"TE that exists (or existed) in nature." [FB:mc]	1072882	\N	SOFA	sequence	2	SO	mobile_genetic_element	natural_transposable_element
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000797	"TE that exists (or existed) in nature." [FB:mc]	1903928	SOFA	SOFA	sequence	3	SO	mobile_genetic_element	natural_transposable_element
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000797	"TE that exists (or existed) in nature." [FB:mc]	2928391	SOFA	SOFA	sequence	4	SO	biological_region	natural_transposable_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000797	"TE that exists (or existed) in nature." [FB:mc]	3173898	SOFA	SOFA	sequence	5	SO	region	natural_transposable_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000797	"TE that exists (or existed) in nature." [FB:mc]	4385752	SOFA	SOFA	sequence	6	SO	sequence_feature	natural_transposable_element
SO:0000798	\N	\N	"TE that has been modified by manipulations in vitro." [FB:mc]	SO:0000798	"TE that has been modified by manipulations in vitro." [FB:mc]	45716	\N	\N	sequence	0	SO	engineered_transposable_element	engineered_transposable_element
SO:0000101	SO:0000798	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000798	"TE that has been modified by manipulations in vitro." [FB:mc]	490387	\N	SOFA	sequence	1	SO	transposable_element	engineered_transposable_element
SO:0000804	SO:0000798	\N	"A region that is engineered." [SO:xp]	SO:0000798	"TE that has been modified by manipulations in vitro." [FB:mc]	490388	\N	\N	sequence	1	SO	engineered_region	engineered_transposable_element
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000798	"TE that has been modified by manipulations in vitro." [FB:mc]	1072883	SOFA	SOFA	sequence	2	SO	integrated_mobile_genetic_element	engineered_transposable_element
SO:0001409	SO:0000804	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000798	"TE that has been modified by manipulations in vitro." [FB:mc]	1072884	\N	SOFA	sequence	2	SO	biomaterial_region	engineered_transposable_element
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000798	"TE that has been modified by manipulations in vitro." [FB:mc]	1903930	SOFA	SOFA	sequence	3	SO	mobile_genetic_element	engineered_transposable_element
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000798	"TE that has been modified by manipulations in vitro." [FB:mc]	1903931	SOFA	SOFA	sequence	3	SO	region	engineered_transposable_element
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000798	"TE that has been modified by manipulations in vitro." [FB:mc]	2928393	SOFA	SOFA	sequence	4	SO	biological_region	engineered_transposable_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000798	"TE that has been modified by manipulations in vitro." [FB:mc]	4966194	SOFA	SOFA	sequence	6	SO	sequence_feature	engineered_transposable_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000798	"TE that has been modified by manipulations in vitro." [FB:mc]	4001704	SOFA	SOFA	sequence	5	SO	region	engineered_transposable_element
SO:0000799	\N	\N	"A transposable_element that is engineered and foreign." [FB:mc]	SO:0000799	"A transposable_element that is engineered and foreign." [FB:mc]	45717	\N	\N	sequence	0	SO	engineered_foreign_transposable_element	engineered_foreign_transposable_element
SO:0000720	SO:0000799	\N	"A transposable element that is foreign." [SO:ke]	SO:0000799	"A transposable_element that is engineered and foreign." [FB:mc]	490389	\N	\N	sequence	1	SO	foreign_transposable_element	engineered_foreign_transposable_element
SO:0000798	SO:0000799	\N	"TE that has been modified by manipulations in vitro." [FB:mc]	SO:0000799	"A transposable_element that is engineered and foreign." [FB:mc]	490390	\N	\N	sequence	1	SO	engineered_transposable_element	engineered_foreign_transposable_element
SO:0000805	SO:0000799	\N	"A region that is engineered and foreign." [SO:xp]	SO:0000799	"A transposable_element that is engineered and foreign." [FB:mc]	490391	\N	\N	sequence	1	SO	engineered_foreign_region	engineered_foreign_transposable_element
SO:0000101	SO:0000720	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000799	"A transposable_element that is engineered and foreign." [FB:mc]	1072885	\N	SOFA	sequence	2	SO	transposable_element	engineered_foreign_transposable_element
SO:0000101	SO:0000798	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000799	"A transposable_element that is engineered and foreign." [FB:mc]	1072886	\N	SOFA	sequence	2	SO	transposable_element	engineered_foreign_transposable_element
SO:0000804	SO:0000798	\N	"A region that is engineered." [SO:xp]	SO:0000799	"A transposable_element that is engineered and foreign." [FB:mc]	1072887	\N	\N	sequence	2	SO	engineered_region	engineered_foreign_transposable_element
SO:0000804	SO:0000805	\N	"A region that is engineered." [SO:xp]	SO:0000799	"A transposable_element that is engineered and foreign." [FB:mc]	1072888	\N	\N	sequence	2	SO	engineered_region	engineered_foreign_transposable_element
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000799	"A transposable_element that is engineered and foreign." [FB:mc]	1903932	SOFA	SOFA	sequence	3	SO	integrated_mobile_genetic_element	engineered_foreign_transposable_element
SO:0001409	SO:0000804	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000799	"A transposable_element that is engineered and foreign." [FB:mc]	1903933	\N	SOFA	sequence	3	SO	biomaterial_region	engineered_foreign_transposable_element
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000799	"A transposable_element that is engineered and foreign." [FB:mc]	2928395	SOFA	SOFA	sequence	4	SO	mobile_genetic_element	engineered_foreign_transposable_element
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000799	"A transposable_element that is engineered and foreign." [FB:mc]	2928396	SOFA	SOFA	sequence	4	SO	region	engineered_foreign_transposable_element
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000799	"A transposable_element that is engineered and foreign." [FB:mc]	4001705	SOFA	SOFA	sequence	5	SO	biological_region	engineered_foreign_transposable_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000799	"A transposable_element that is engineered and foreign." [FB:mc]	5741065	SOFA	SOFA	sequence	7	SO	sequence_feature	engineered_foreign_transposable_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000799	"A transposable_element that is engineered and foreign." [FB:mc]	4966195	SOFA	SOFA	sequence	6	SO	region	engineered_foreign_transposable_element
SO:0000800	\N	\N	"A multi-chromosome duplication aberration generated by reassortment of other aberration components." [FB:gm]	SO:0000800	"A multi-chromosome duplication aberration generated by reassortment of other aberration components." [FB:gm]	45718	\N	\N	sequence	0	SO	assortment_derived_duplication	assortment_derived_duplication
SO:0001504	SO:0000800	\N	"A chromosome variation derived from an event during meiosis." [SO:ke]	SO:0000800	"A multi-chromosome duplication aberration generated by reassortment of other aberration components." [FB:gm]	490392	\N	\N	sequence	1	SO	assortment_derived_variation	assortment_derived_duplication
SO:0000240	SO:0001504	\N	"" []	SO:0000800	"A multi-chromosome duplication aberration generated by reassortment of other aberration components." [FB:gm]	1072889	\N	\N	sequence	2	SO	chromosome_variation	assortment_derived_duplication
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0000800	"A multi-chromosome duplication aberration generated by reassortment of other aberration components." [FB:gm]	1903934	\N	\N	sequence	3	SO	variant_collection	assortment_derived_duplication
SO:0001524	SO:0000240	\N	"" []	SO:0000800	"A multi-chromosome duplication aberration generated by reassortment of other aberration components." [FB:gm]	1903935	\N	\N	sequence	3	SO	chromosomally_aberrant_genome	assortment_derived_duplication
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000800	"A multi-chromosome duplication aberration generated by reassortment of other aberration components." [FB:gm]	2928397	\N	\N	sequence	4	SO	sequence_collection	assortment_derived_duplication
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0000800	"A multi-chromosome duplication aberration generated by reassortment of other aberration components." [FB:gm]	2928398	\N	\N	sequence	4	SO	variant_genome	assortment_derived_duplication
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0000800	"A multi-chromosome duplication aberration generated by reassortment of other aberration components." [FB:gm]	4001707	\N	\N	sequence	5	SO	genome	assortment_derived_duplication
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000800	"A multi-chromosome duplication aberration generated by reassortment of other aberration components." [FB:gm]	4966196	\N	\N	sequence	6	SO	sequence_collection	assortment_derived_duplication
SO:0000801	\N	\N	"A multi-chromosome aberration generated by reassortment of other aberration components; presumed to have a deficiency and a duplication." [FB:gm]	SO:0000801	"A multi-chromosome aberration generated by reassortment of other aberration components; presumed to have a deficiency and a duplication." [FB:gm]	45719	\N	\N	sequence	0	SO	assortment_derived_deficiency_plus_duplication	assortment_derived_deficiency_plus_duplication
SO:0001504	SO:0000801	\N	"A chromosome variation derived from an event during meiosis." [SO:ke]	SO:0000801	"A multi-chromosome aberration generated by reassortment of other aberration components; presumed to have a deficiency and a duplication." [FB:gm]	490393	\N	\N	sequence	1	SO	assortment_derived_variation	assortment_derived_deficiency_plus_duplication
SO:0000240	SO:0001504	\N	"" []	SO:0000801	"A multi-chromosome aberration generated by reassortment of other aberration components; presumed to have a deficiency and a duplication." [FB:gm]	1072890	\N	\N	sequence	2	SO	chromosome_variation	assortment_derived_deficiency_plus_duplication
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0000801	"A multi-chromosome aberration generated by reassortment of other aberration components; presumed to have a deficiency and a duplication." [FB:gm]	1903936	\N	\N	sequence	3	SO	variant_collection	assortment_derived_deficiency_plus_duplication
SO:0001524	SO:0000240	\N	"" []	SO:0000801	"A multi-chromosome aberration generated by reassortment of other aberration components; presumed to have a deficiency and a duplication." [FB:gm]	1903937	\N	\N	sequence	3	SO	chromosomally_aberrant_genome	assortment_derived_deficiency_plus_duplication
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000801	"A multi-chromosome aberration generated by reassortment of other aberration components; presumed to have a deficiency and a duplication." [FB:gm]	2928399	\N	\N	sequence	4	SO	sequence_collection	assortment_derived_deficiency_plus_duplication
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0000801	"A multi-chromosome aberration generated by reassortment of other aberration components; presumed to have a deficiency and a duplication." [FB:gm]	2928400	\N	\N	sequence	4	SO	variant_genome	assortment_derived_deficiency_plus_duplication
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0000801	"A multi-chromosome aberration generated by reassortment of other aberration components; presumed to have a deficiency and a duplication." [FB:gm]	4001708	\N	\N	sequence	5	SO	genome	assortment_derived_deficiency_plus_duplication
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000801	"A multi-chromosome aberration generated by reassortment of other aberration components; presumed to have a deficiency and a duplication." [FB:gm]	4966197	\N	\N	sequence	6	SO	sequence_collection	assortment_derived_deficiency_plus_duplication
SO:0000802	\N	\N	"A multi-chromosome deficiency aberration generated by reassortment of other aberration components." [FB:gm]	SO:0000802	"A multi-chromosome deficiency aberration generated by reassortment of other aberration components." [FB:gm]	45720	\N	\N	sequence	0	SO	assortment_derived_deficiency	assortment_derived_deficiency
SO:0001504	SO:0000802	\N	"A chromosome variation derived from an event during meiosis." [SO:ke]	SO:0000802	"A multi-chromosome deficiency aberration generated by reassortment of other aberration components." [FB:gm]	490394	\N	\N	sequence	1	SO	assortment_derived_variation	assortment_derived_deficiency
SO:0000240	SO:0001504	\N	"" []	SO:0000802	"A multi-chromosome deficiency aberration generated by reassortment of other aberration components." [FB:gm]	1072891	\N	\N	sequence	2	SO	chromosome_variation	assortment_derived_deficiency
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0000802	"A multi-chromosome deficiency aberration generated by reassortment of other aberration components." [FB:gm]	1903938	\N	\N	sequence	3	SO	variant_collection	assortment_derived_deficiency
SO:0001524	SO:0000240	\N	"" []	SO:0000802	"A multi-chromosome deficiency aberration generated by reassortment of other aberration components." [FB:gm]	1903939	\N	\N	sequence	3	SO	chromosomally_aberrant_genome	assortment_derived_deficiency
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000802	"A multi-chromosome deficiency aberration generated by reassortment of other aberration components." [FB:gm]	2928401	\N	\N	sequence	4	SO	sequence_collection	assortment_derived_deficiency
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0000802	"A multi-chromosome deficiency aberration generated by reassortment of other aberration components." [FB:gm]	2928402	\N	\N	sequence	4	SO	variant_genome	assortment_derived_deficiency
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0000802	"A multi-chromosome deficiency aberration generated by reassortment of other aberration components." [FB:gm]	4001709	\N	\N	sequence	5	SO	genome	assortment_derived_deficiency
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000802	"A multi-chromosome deficiency aberration generated by reassortment of other aberration components." [FB:gm]	4966198	\N	\N	sequence	6	SO	sequence_collection	assortment_derived_deficiency
SO:0000803	\N	\N	"A multi-chromosome aberration generated by reassortment of other aberration components; presumed to have a deficiency or a duplication." [FB:gm]	SO:0000803	"A multi-chromosome aberration generated by reassortment of other aberration components; presumed to have a deficiency or a duplication." [FB:gm]	45721	\N	\N	sequence	0	SO	assortment_derived_aneuploid	assortment_derived_aneuploid
SO:0001504	SO:0000803	\N	"A chromosome variation derived from an event during meiosis." [SO:ke]	SO:0000803	"A multi-chromosome aberration generated by reassortment of other aberration components; presumed to have a deficiency or a duplication." [FB:gm]	490395	\N	\N	sequence	1	SO	assortment_derived_variation	assortment_derived_aneuploid
SO:0000240	SO:0001504	\N	"" []	SO:0000803	"A multi-chromosome aberration generated by reassortment of other aberration components; presumed to have a deficiency or a duplication." [FB:gm]	1072892	\N	\N	sequence	2	SO	chromosome_variation	assortment_derived_aneuploid
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0000803	"A multi-chromosome aberration generated by reassortment of other aberration components; presumed to have a deficiency or a duplication." [FB:gm]	1903940	\N	\N	sequence	3	SO	variant_collection	assortment_derived_aneuploid
SO:0001524	SO:0000240	\N	"" []	SO:0000803	"A multi-chromosome aberration generated by reassortment of other aberration components; presumed to have a deficiency or a duplication." [FB:gm]	1903941	\N	\N	sequence	3	SO	chromosomally_aberrant_genome	assortment_derived_aneuploid
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000803	"A multi-chromosome aberration generated by reassortment of other aberration components; presumed to have a deficiency or a duplication." [FB:gm]	2928403	\N	\N	sequence	4	SO	sequence_collection	assortment_derived_aneuploid
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0000803	"A multi-chromosome aberration generated by reassortment of other aberration components; presumed to have a deficiency or a duplication." [FB:gm]	2928404	\N	\N	sequence	4	SO	variant_genome	assortment_derived_aneuploid
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0000803	"A multi-chromosome aberration generated by reassortment of other aberration components; presumed to have a deficiency or a duplication." [FB:gm]	4001710	\N	\N	sequence	5	SO	genome	assortment_derived_aneuploid
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0000803	"A multi-chromosome aberration generated by reassortment of other aberration components; presumed to have a deficiency or a duplication." [FB:gm]	4966199	\N	\N	sequence	6	SO	sequence_collection	assortment_derived_aneuploid
SO:0000804	\N	\N	"A region that is engineered." [SO:xp]	SO:0000804	"A region that is engineered." [SO:xp]	45722	\N	\N	sequence	0	SO	engineered_region	engineered_region
SO:0001409	SO:0000804	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000804	"A region that is engineered." [SO:xp]	490396	\N	SOFA	sequence	1	SO	biomaterial_region	engineered_region
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000804	"A region that is engineered." [SO:xp]	1072893	SOFA	SOFA	sequence	2	SO	region	engineered_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000804	"A region that is engineered." [SO:xp]	1903942	SOFA	SOFA	sequence	3	SO	sequence_feature	engineered_region
SO:0000805	\N	\N	"A region that is engineered and foreign." [SO:xp]	SO:0000805	"A region that is engineered and foreign." [SO:xp]	45723	\N	\N	sequence	0	SO	engineered_foreign_region	engineered_foreign_region
SO:0000804	SO:0000805	\N	"A region that is engineered." [SO:xp]	SO:0000805	"A region that is engineered and foreign." [SO:xp]	490397	\N	\N	sequence	1	SO	engineered_region	engineered_foreign_region
SO:0001409	SO:0000804	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000805	"A region that is engineered and foreign." [SO:xp]	1072894	\N	SOFA	sequence	2	SO	biomaterial_region	engineered_foreign_region
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000805	"A region that is engineered and foreign." [SO:xp]	1903943	SOFA	SOFA	sequence	3	SO	region	engineered_foreign_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000805	"A region that is engineered and foreign." [SO:xp]	2928405	SOFA	SOFA	sequence	4	SO	sequence_feature	engineered_foreign_region
SO:0000806	\N	\N	"" []	SO:0000806	"" []	45724	\N	\N	sequence	0	SO	fusion	fusion
SO:0000733	SO:0000806	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000806	"" []	490398	\N	\N	sequence	1	SO	feature_attribute	fusion
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000806	"" []	1072895	\N	\N	sequence	2	SO	sequence_attribute	fusion
SO:0000807	\N	\N	"A tag that is engineered." [SO:xp]	SO:0000807	"A tag that is engineered." [SO:xp]	45725	\N	\N	sequence	0	SO	engineered_tag	engineered_tag
SO:0000324	SO:0000807	\N	"A nucleotide sequence that may be used to identify a larger sequence." [SO:ke]	SO:0000807	"A tag that is engineered." [SO:xp]	490399	\N	SOFA	sequence	1	SO	tag	engineered_tag
SO:0000804	SO:0000807	\N	"A region that is engineered." [SO:xp]	SO:0000807	"A tag that is engineered." [SO:xp]	490400	\N	\N	sequence	1	SO	engineered_region	engineered_tag
SO:0000696	SO:0000324	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0000807	"A tag that is engineered." [SO:xp]	1072896	SOFA	SOFA	sequence	2	SO	oligo	engineered_tag
SO:0001409	SO:0000804	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000807	"A tag that is engineered." [SO:xp]	1072897	\N	SOFA	sequence	2	SO	biomaterial_region	engineered_tag
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0000807	"A tag that is engineered." [SO:xp]	1903944	SOFA	SOFA	sequence	3	SO	reagent	engineered_tag
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000807	"A tag that is engineered." [SO:xp]	4001711	SOFA	SOFA	sequence	5	SO	region	engineered_tag
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000807	"A tag that is engineered." [SO:xp]	2928406	SOFA	SOFA	sequence	4	SO	biomaterial_region	engineered_tag
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000807	"A tag that is engineered." [SO:xp]	4132314	SOFA	SOFA	sequence	6	SO	sequence_feature	engineered_tag
SO:0000808	\N	\N	"A cDNA clone that has been validated." [SO:xp]	SO:0000808	"A cDNA clone that has been validated." [SO:xp]	45726	\N	\N	sequence	0	SO	validated_cDNA_clone	validated_cDNA_clone
SO:0000317	SO:0000808	\N	"Complementary DNA; A piece of DNA copied from an mRNA and spliced into a vector for propagation in a suitable host." [http://seqcore.brcf.med.umich.edu/doc/educ/dnapr/mbglossary/mbgloss.html]	SO:0000808	"A cDNA clone that has been validated." [SO:xp]	490401	\N	\N	sequence	1	SO	cDNA_clone	validated_cDNA_clone
SO:0000151	SO:0000317	\N	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0000808	"A cDNA clone that has been validated." [SO:xp]	1072898	\N	SOFA	sequence	2	SO	clone	validated_cDNA_clone
SO:0000695	SO:0000151	\N	"A sequence used in experiment." [SO:ke]	SO:0000808	"A cDNA clone that has been validated." [SO:xp]	1903946	SOFA	SOFA	sequence	3	SO	reagent	validated_cDNA_clone
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000808	"A cDNA clone that has been validated." [SO:xp]	2928408	SOFA	SOFA	sequence	4	SO	biomaterial_region	validated_cDNA_clone
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000808	"A cDNA clone that has been validated." [SO:xp]	4001712	SOFA	SOFA	sequence	5	SO	region	validated_cDNA_clone
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000808	"A cDNA clone that has been validated." [SO:xp]	4966200	SOFA	SOFA	sequence	6	SO	sequence_feature	validated_cDNA_clone
SO:0000809	\N	\N	"A cDNA clone that is invalid." [SO:xp]	SO:0000809	"A cDNA clone that is invalid." [SO:xp]	45727	\N	\N	sequence	0	SO	invalidated_cDNA_clone	invalidated_cDNA_clone
SO:0000317	SO:0000809	\N	"Complementary DNA; A piece of DNA copied from an mRNA and spliced into a vector for propagation in a suitable host." [http://seqcore.brcf.med.umich.edu/doc/educ/dnapr/mbglossary/mbgloss.html]	SO:0000809	"A cDNA clone that is invalid." [SO:xp]	490402	\N	\N	sequence	1	SO	cDNA_clone	invalidated_cDNA_clone
SO:0000151	SO:0000317	\N	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0000809	"A cDNA clone that is invalid." [SO:xp]	1072899	\N	SOFA	sequence	2	SO	clone	invalidated_cDNA_clone
SO:0000695	SO:0000151	\N	"A sequence used in experiment." [SO:ke]	SO:0000809	"A cDNA clone that is invalid." [SO:xp]	1903947	SOFA	SOFA	sequence	3	SO	reagent	invalidated_cDNA_clone
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000809	"A cDNA clone that is invalid." [SO:xp]	2928409	SOFA	SOFA	sequence	4	SO	biomaterial_region	invalidated_cDNA_clone
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000809	"A cDNA clone that is invalid." [SO:xp]	4001713	SOFA	SOFA	sequence	5	SO	region	invalidated_cDNA_clone
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000809	"A cDNA clone that is invalid." [SO:xp]	4966201	SOFA	SOFA	sequence	6	SO	sequence_feature	invalidated_cDNA_clone
SO:0000810	\N	\N	"A cDNA clone invalidated because it is chimeric." [SO:xp]	SO:0000810	"A cDNA clone invalidated because it is chimeric." [SO:xp]	45728	\N	\N	sequence	0	SO	chimeric_cDNA_clone	chimeric_cDNA_clone
SO:0000809	SO:0000810	\N	"A cDNA clone that is invalid." [SO:xp]	SO:0000810	"A cDNA clone invalidated because it is chimeric." [SO:xp]	490403	\N	\N	sequence	1	SO	invalidated_cDNA_clone	chimeric_cDNA_clone
SO:0000317	SO:0000809	\N	"Complementary DNA; A piece of DNA copied from an mRNA and spliced into a vector for propagation in a suitable host." [http://seqcore.brcf.med.umich.edu/doc/educ/dnapr/mbglossary/mbgloss.html]	SO:0000810	"A cDNA clone invalidated because it is chimeric." [SO:xp]	1072900	\N	\N	sequence	2	SO	cDNA_clone	chimeric_cDNA_clone
SO:0000151	SO:0000317	\N	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0000810	"A cDNA clone invalidated because it is chimeric." [SO:xp]	1903948	\N	SOFA	sequence	3	SO	clone	chimeric_cDNA_clone
SO:0000695	SO:0000151	\N	"A sequence used in experiment." [SO:ke]	SO:0000810	"A cDNA clone invalidated because it is chimeric." [SO:xp]	2928410	SOFA	SOFA	sequence	4	SO	reagent	chimeric_cDNA_clone
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000810	"A cDNA clone invalidated because it is chimeric." [SO:xp]	4001714	SOFA	SOFA	sequence	5	SO	biomaterial_region	chimeric_cDNA_clone
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000810	"A cDNA clone invalidated because it is chimeric." [SO:xp]	4966202	SOFA	SOFA	sequence	6	SO	region	chimeric_cDNA_clone
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000810	"A cDNA clone invalidated because it is chimeric." [SO:xp]	5741066	SOFA	SOFA	sequence	7	SO	sequence_feature	chimeric_cDNA_clone
SO:0000811	\N	\N	"A cDNA clone invalidated by genomic contamination." [SO:xp]	SO:0000811	"A cDNA clone invalidated by genomic contamination." [SO:xp]	45729	\N	\N	sequence	0	SO	genomically_contaminated_cDNA_clone	genomically_contaminated_cDNA_clone
SO:0000809	SO:0000811	\N	"A cDNA clone that is invalid." [SO:xp]	SO:0000811	"A cDNA clone invalidated by genomic contamination." [SO:xp]	490404	\N	\N	sequence	1	SO	invalidated_cDNA_clone	genomically_contaminated_cDNA_clone
SO:0000317	SO:0000809	\N	"Complementary DNA; A piece of DNA copied from an mRNA and spliced into a vector for propagation in a suitable host." [http://seqcore.brcf.med.umich.edu/doc/educ/dnapr/mbglossary/mbgloss.html]	SO:0000811	"A cDNA clone invalidated by genomic contamination." [SO:xp]	1072901	\N	\N	sequence	2	SO	cDNA_clone	genomically_contaminated_cDNA_clone
SO:0000151	SO:0000317	\N	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0000811	"A cDNA clone invalidated by genomic contamination." [SO:xp]	1903949	\N	SOFA	sequence	3	SO	clone	genomically_contaminated_cDNA_clone
SO:0000695	SO:0000151	\N	"A sequence used in experiment." [SO:ke]	SO:0000811	"A cDNA clone invalidated by genomic contamination." [SO:xp]	2928411	SOFA	SOFA	sequence	4	SO	reagent	genomically_contaminated_cDNA_clone
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000811	"A cDNA clone invalidated by genomic contamination." [SO:xp]	4001715	SOFA	SOFA	sequence	5	SO	biomaterial_region	genomically_contaminated_cDNA_clone
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000811	"A cDNA clone invalidated by genomic contamination." [SO:xp]	4966203	SOFA	SOFA	sequence	6	SO	region	genomically_contaminated_cDNA_clone
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000811	"A cDNA clone invalidated by genomic contamination." [SO:xp]	5741067	SOFA	SOFA	sequence	7	SO	sequence_feature	genomically_contaminated_cDNA_clone
SO:0000812	\N	\N	"A cDNA clone invalidated by polyA priming." [SO:xp]	SO:0000812	"A cDNA clone invalidated by polyA priming." [SO:xp]	45730	\N	\N	sequence	0	SO	polyA_primed_cDNA_clone	polyA_primed_cDNA_clone
SO:0000809	SO:0000812	\N	"A cDNA clone that is invalid." [SO:xp]	SO:0000812	"A cDNA clone invalidated by polyA priming." [SO:xp]	490405	\N	\N	sequence	1	SO	invalidated_cDNA_clone	polyA_primed_cDNA_clone
SO:0000317	SO:0000809	\N	"Complementary DNA; A piece of DNA copied from an mRNA and spliced into a vector for propagation in a suitable host." [http://seqcore.brcf.med.umich.edu/doc/educ/dnapr/mbglossary/mbgloss.html]	SO:0000812	"A cDNA clone invalidated by polyA priming." [SO:xp]	1072902	\N	\N	sequence	2	SO	cDNA_clone	polyA_primed_cDNA_clone
SO:0000151	SO:0000317	\N	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0000812	"A cDNA clone invalidated by polyA priming." [SO:xp]	1903950	\N	SOFA	sequence	3	SO	clone	polyA_primed_cDNA_clone
SO:0000695	SO:0000151	\N	"A sequence used in experiment." [SO:ke]	SO:0000812	"A cDNA clone invalidated by polyA priming." [SO:xp]	2928412	SOFA	SOFA	sequence	4	SO	reagent	polyA_primed_cDNA_clone
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000812	"A cDNA clone invalidated by polyA priming." [SO:xp]	4001716	SOFA	SOFA	sequence	5	SO	biomaterial_region	polyA_primed_cDNA_clone
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000812	"A cDNA clone invalidated by polyA priming." [SO:xp]	4966204	SOFA	SOFA	sequence	6	SO	region	polyA_primed_cDNA_clone
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000812	"A cDNA clone invalidated by polyA priming." [SO:xp]	5741068	SOFA	SOFA	sequence	7	SO	sequence_feature	polyA_primed_cDNA_clone
SO:0000813	\N	\N	"A cDNA invalidated clone by partial processing." [SO:xp]	SO:0000813	"A cDNA invalidated clone by partial processing." [SO:xp]	45731	\N	\N	sequence	0	SO	partially_processed_cDNA_clone	partially_processed_cDNA_clone
SO:0000809	SO:0000813	\N	"A cDNA clone that is invalid." [SO:xp]	SO:0000813	"A cDNA invalidated clone by partial processing." [SO:xp]	490406	\N	\N	sequence	1	SO	invalidated_cDNA_clone	partially_processed_cDNA_clone
SO:0000317	SO:0000809	\N	"Complementary DNA; A piece of DNA copied from an mRNA and spliced into a vector for propagation in a suitable host." [http://seqcore.brcf.med.umich.edu/doc/educ/dnapr/mbglossary/mbgloss.html]	SO:0000813	"A cDNA invalidated clone by partial processing." [SO:xp]	1072903	\N	\N	sequence	2	SO	cDNA_clone	partially_processed_cDNA_clone
SO:0000151	SO:0000317	\N	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0000813	"A cDNA invalidated clone by partial processing." [SO:xp]	1903951	\N	SOFA	sequence	3	SO	clone	partially_processed_cDNA_clone
SO:0000695	SO:0000151	\N	"A sequence used in experiment." [SO:ke]	SO:0000813	"A cDNA invalidated clone by partial processing." [SO:xp]	2928413	SOFA	SOFA	sequence	4	SO	reagent	partially_processed_cDNA_clone
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000813	"A cDNA invalidated clone by partial processing." [SO:xp]	4001717	SOFA	SOFA	sequence	5	SO	biomaterial_region	partially_processed_cDNA_clone
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000813	"A cDNA invalidated clone by partial processing." [SO:xp]	4966205	SOFA	SOFA	sequence	6	SO	region	partially_processed_cDNA_clone
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000813	"A cDNA invalidated clone by partial processing." [SO:xp]	5741069	SOFA	SOFA	sequence	7	SO	sequence_feature	partially_processed_cDNA_clone
SO:0000814	\N	\N	"An attribute describing a region's ability, when introduced to a mutant organism, to re-establish (rescue) a phenotype." [SO:ke]	SO:0000814	"An attribute describing a region's ability, when introduced to a mutant organism, to re-establish (rescue) a phenotype." [SO:ke]	45732	\N	\N	sequence	0	SO	rescue	rescue
SO:0000733	SO:0000814	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000814	"An attribute describing a region's ability, when introduced to a mutant organism, to re-establish (rescue) a phenotype." [SO:ke]	490407	\N	\N	sequence	1	SO	feature_attribute	rescue
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000814	"An attribute describing a region's ability, when introduced to a mutant organism, to re-establish (rescue) a phenotype." [SO:ke]	1072904	\N	\N	sequence	2	SO	sequence_attribute	rescue
SO:0000815	\N	\N	"By definition, minigenes are short open-reading frames (ORF), usually encoding approximately 9 to 20 amino acids, which are expressed in vivo (as distinct from being synthesized as peptide or protein ex vivo and subsequently injected). The in vivo synthesis confers a distinct advantage: the expressed sequences can enter both antigen presentation pathways, MHC I (inducing CD8+ T- cells, which are usually cytotoxic T-lymphocytes (CTL)) and MHC II (inducing CD4+ T-cells, usually 'T-helpers' (Th)); and can encounter B-cells, inducing antibody responses. Three main vector approaches have been used to deliver minigenes: viral vectors, bacterial vectors and plasmid DNA." [PMID:15992143]	SO:0000815	"By definition, minigenes are short open-reading frames (ORF), usually encoding approximately 9 to 20 amino acids, which are expressed in vivo (as distinct from being synthesized as peptide or protein ex vivo and subsequently injected). The in vivo synthesis confers a distinct advantage: the expressed sequences can enter both antigen presentation pathways, MHC I (inducing CD8+ T- cells, which are usually cytotoxic T-lymphocytes (CTL)) and MHC II (inducing CD4+ T-cells, usually 'T-helpers' (Th)); and can encounter B-cells, inducing antibody responses. Three main vector approaches have been used to deliver minigenes: viral vectors, bacterial vectors and plasmid DNA." [PMID:15992143]	45733	\N	\N	sequence	0	SO	mini_gene	mini_gene
SO:0000236	SO:0000815	\N	"The in-frame interval between the stop codons of a reading frame which when read as sequential triplets, has the potential of encoding a sequential string of amino acids. TER(NNN)nTER." [SGD:rb, SO:ma]	SO:0000815	"By definition, minigenes are short open-reading frames (ORF), usually encoding approximately 9 to 20 amino acids, which are expressed in vivo (as distinct from being synthesized as peptide or protein ex vivo and subsequently injected). The in vivo synthesis confers a distinct advantage: the expressed sequences can enter both antigen presentation pathways, MHC I (inducing CD8+ T- cells, which are usually cytotoxic T-lymphocytes (CTL)) and MHC II (inducing CD4+ T-cells, usually 'T-helpers' (Th)); and can encounter B-cells, inducing antibody responses. Three main vector approaches have been used to deliver minigenes: viral vectors, bacterial vectors and plasmid DNA." [PMID:15992143]	490408	\N	SOFA	sequence	1	SO	ORF	mini_gene
SO:0000717	SO:0000236	\N	"A nucleic acid sequence that when read as sequential triplets, has the potential of encoding a sequential string of amino acids. It need not contain the start or stop codon." [SGD:rb]	SO:0000815	"By definition, minigenes are short open-reading frames (ORF), usually encoding approximately 9 to 20 amino acids, which are expressed in vivo (as distinct from being synthesized as peptide or protein ex vivo and subsequently injected). The in vivo synthesis confers a distinct advantage: the expressed sequences can enter both antigen presentation pathways, MHC I (inducing CD8+ T- cells, which are usually cytotoxic T-lymphocytes (CTL)) and MHC II (inducing CD4+ T-cells, usually 'T-helpers' (Th)); and can encounter B-cells, inducing antibody responses. Three main vector approaches have been used to deliver minigenes: viral vectors, bacterial vectors and plasmid DNA." [PMID:15992143]	1072905	SOFA	SOFA	sequence	2	SO	reading_frame	mini_gene
SO:0001410	SO:0000717	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000815	"By definition, minigenes are short open-reading frames (ORF), usually encoding approximately 9 to 20 amino acids, which are expressed in vivo (as distinct from being synthesized as peptide or protein ex vivo and subsequently injected). The in vivo synthesis confers a distinct advantage: the expressed sequences can enter both antigen presentation pathways, MHC I (inducing CD8+ T- cells, which are usually cytotoxic T-lymphocytes (CTL)) and MHC II (inducing CD4+ T-cells, usually 'T-helpers' (Th)); and can encounter B-cells, inducing antibody responses. Three main vector approaches have been used to deliver minigenes: viral vectors, bacterial vectors and plasmid DNA." [PMID:15992143]	1903952	SOFA	SOFA	sequence	3	SO	experimental_feature	mini_gene
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000815	"By definition, minigenes are short open-reading frames (ORF), usually encoding approximately 9 to 20 amino acids, which are expressed in vivo (as distinct from being synthesized as peptide or protein ex vivo and subsequently injected). The in vivo synthesis confers a distinct advantage: the expressed sequences can enter both antigen presentation pathways, MHC I (inducing CD8+ T- cells, which are usually cytotoxic T-lymphocytes (CTL)) and MHC II (inducing CD4+ T-cells, usually 'T-helpers' (Th)); and can encounter B-cells, inducing antibody responses. Three main vector approaches have been used to deliver minigenes: viral vectors, bacterial vectors and plasmid DNA." [PMID:15992143]	2928414	SOFA	SOFA	sequence	4	SO	region	mini_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000815	"By definition, minigenes are short open-reading frames (ORF), usually encoding approximately 9 to 20 amino acids, which are expressed in vivo (as distinct from being synthesized as peptide or protein ex vivo and subsequently injected). The in vivo synthesis confers a distinct advantage: the expressed sequences can enter both antigen presentation pathways, MHC I (inducing CD8+ T- cells, which are usually cytotoxic T-lymphocytes (CTL)) and MHC II (inducing CD4+ T-cells, usually 'T-helpers' (Th)); and can encounter B-cells, inducing antibody responses. Three main vector approaches have been used to deliver minigenes: viral vectors, bacterial vectors and plasmid DNA." [PMID:15992143]	4001718	SOFA	SOFA	sequence	5	SO	sequence_feature	mini_gene
SO:0000816	\N	\N	"A gene that rescues." [SO:xp]	SO:0000816	"A gene that rescues." [SO:xp]	45734	\N	\N	sequence	0	SO	rescue_gene	rescue_gene
SO:0000704	SO:0000816	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000816	"A gene that rescues." [SO:xp]	490409	\N	SOFA	sequence	1	SO	gene	rescue_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000816	"A gene that rescues." [SO:xp]	1072906	SOFA	SOFA	sequence	2	SO	biological_region	rescue_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000816	"A gene that rescues." [SO:xp]	1903953	SOFA	SOFA	sequence	3	SO	region	rescue_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000816	"A gene that rescues." [SO:xp]	2928415	SOFA	SOFA	sequence	4	SO	sequence_feature	rescue_gene
SO:0000817	\N	\N	"An attribute describing sequence with the genotype found in nature and/or standard laboratory stock." [SO:ke]	SO:0000817	"An attribute describing sequence with the genotype found in nature and/or standard laboratory stock." [SO:ke]	45735	\N	\N	sequence	0	SO	wild_type	wild_type
SO:0000733	SO:0000817	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000817	"An attribute describing sequence with the genotype found in nature and/or standard laboratory stock." [SO:ke]	490410	\N	\N	sequence	1	SO	feature_attribute	wild_type
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000817	"An attribute describing sequence with the genotype found in nature and/or standard laboratory stock." [SO:ke]	1072907	\N	\N	sequence	2	SO	sequence_attribute	wild_type
SO:0000818	\N	\N	"A gene that rescues." [SO:xp]	SO:0000818	"A gene that rescues." [SO:xp]	45736	\N	\N	sequence	0	SO	wild_type_rescue_gene	wild_type_rescue_gene
SO:0000816	SO:0000818	\N	"A gene that rescues." [SO:xp]	SO:0000818	"A gene that rescues." [SO:xp]	490411	\N	\N	sequence	1	SO	rescue_gene	wild_type_rescue_gene
SO:0000704	SO:0000816	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000818	"A gene that rescues." [SO:xp]	1072908	\N	SOFA	sequence	2	SO	gene	wild_type_rescue_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000818	"A gene that rescues." [SO:xp]	1903954	SOFA	SOFA	sequence	3	SO	biological_region	wild_type_rescue_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000818	"A gene that rescues." [SO:xp]	2928416	SOFA	SOFA	sequence	4	SO	region	wild_type_rescue_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000818	"A gene that rescues." [SO:xp]	4001719	SOFA	SOFA	sequence	5	SO	sequence_feature	wild_type_rescue_gene
SO:0000819	\N	\N	"A chromosome originating in a mitochondria." [SO:xp]	SO:0000819	"A chromosome originating in a mitochondria." [SO:xp]	45737	\N	\N	sequence	0	SO	mitochondrial_chromosome	mitochondrial_chromosome
SO:0000340	SO:0000819	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000819	"A chromosome originating in a mitochondria." [SO:xp]	490412	\N	SOFA	sequence	1	SO	chromosome	mitochondrial_chromosome
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000819	"A chromosome originating in a mitochondria." [SO:xp]	1072909	SOFA	SOFA	sequence	2	SO	replicon	mitochondrial_chromosome
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000819	"A chromosome originating in a mitochondria." [SO:xp]	1903955	SOFA	SOFA	sequence	3	SO	biological_region	mitochondrial_chromosome
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000819	"A chromosome originating in a mitochondria." [SO:xp]	2928417	SOFA	SOFA	sequence	4	SO	region	mitochondrial_chromosome
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000819	"A chromosome originating in a mitochondria." [SO:xp]	4001720	SOFA	SOFA	sequence	5	SO	sequence_feature	mitochondrial_chromosome
SO:0000820	\N	\N	"A chromosome originating in a chloroplast." [SO:xp]	SO:0000820	"A chromosome originating in a chloroplast." [SO:xp]	45738	\N	\N	sequence	0	SO	chloroplast_chromosome	chloroplast_chromosome
SO:0000340	SO:0000820	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000820	"A chromosome originating in a chloroplast." [SO:xp]	490413	\N	SOFA	sequence	1	SO	chromosome	chloroplast_chromosome
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000820	"A chromosome originating in a chloroplast." [SO:xp]	1072910	SOFA	SOFA	sequence	2	SO	replicon	chloroplast_chromosome
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000820	"A chromosome originating in a chloroplast." [SO:xp]	1903956	SOFA	SOFA	sequence	3	SO	biological_region	chloroplast_chromosome
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000820	"A chromosome originating in a chloroplast." [SO:xp]	2928418	SOFA	SOFA	sequence	4	SO	region	chloroplast_chromosome
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000820	"A chromosome originating in a chloroplast." [SO:xp]	4001721	SOFA	SOFA	sequence	5	SO	sequence_feature	chloroplast_chromosome
SO:0000821	\N	\N	"A chromosome originating in a chromoplast." [SO:xp]	SO:0000821	"A chromosome originating in a chromoplast." [SO:xp]	45739	\N	\N	sequence	0	SO	chromoplast_chromosome	chromoplast_chromosome
SO:0000340	SO:0000821	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000821	"A chromosome originating in a chromoplast." [SO:xp]	490414	\N	SOFA	sequence	1	SO	chromosome	chromoplast_chromosome
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000821	"A chromosome originating in a chromoplast." [SO:xp]	1072911	SOFA	SOFA	sequence	2	SO	replicon	chromoplast_chromosome
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000821	"A chromosome originating in a chromoplast." [SO:xp]	1903957	SOFA	SOFA	sequence	3	SO	biological_region	chromoplast_chromosome
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000821	"A chromosome originating in a chromoplast." [SO:xp]	2928419	SOFA	SOFA	sequence	4	SO	region	chromoplast_chromosome
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000821	"A chromosome originating in a chromoplast." [SO:xp]	4001722	SOFA	SOFA	sequence	5	SO	sequence_feature	chromoplast_chromosome
SO:0000822	\N	\N	"A chromosome originating in a cyanelle." [SO:xp]	SO:0000822	"A chromosome originating in a cyanelle." [SO:xp]	45740	\N	\N	sequence	0	SO	cyanelle_chromosome	cyanelle_chromosome
SO:0000340	SO:0000822	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000822	"A chromosome originating in a cyanelle." [SO:xp]	490415	\N	SOFA	sequence	1	SO	chromosome	cyanelle_chromosome
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000822	"A chromosome originating in a cyanelle." [SO:xp]	1072912	SOFA	SOFA	sequence	2	SO	replicon	cyanelle_chromosome
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000822	"A chromosome originating in a cyanelle." [SO:xp]	1903958	SOFA	SOFA	sequence	3	SO	biological_region	cyanelle_chromosome
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000822	"A chromosome originating in a cyanelle." [SO:xp]	2928420	SOFA	SOFA	sequence	4	SO	region	cyanelle_chromosome
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000822	"A chromosome originating in a cyanelle." [SO:xp]	4001723	SOFA	SOFA	sequence	5	SO	sequence_feature	cyanelle_chromosome
SO:0000823	\N	\N	"A chromosome with origin in a leucoplast." [SO:xp]	SO:0000823	"A chromosome with origin in a leucoplast." [SO:xp]	45741	\N	\N	sequence	0	SO	leucoplast_chromosome	leucoplast_chromosome
SO:0000340	SO:0000823	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000823	"A chromosome with origin in a leucoplast." [SO:xp]	490416	\N	SOFA	sequence	1	SO	chromosome	leucoplast_chromosome
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000823	"A chromosome with origin in a leucoplast." [SO:xp]	1072913	SOFA	SOFA	sequence	2	SO	replicon	leucoplast_chromosome
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000823	"A chromosome with origin in a leucoplast." [SO:xp]	1903959	SOFA	SOFA	sequence	3	SO	biological_region	leucoplast_chromosome
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000823	"A chromosome with origin in a leucoplast." [SO:xp]	2928421	SOFA	SOFA	sequence	4	SO	region	leucoplast_chromosome
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000823	"A chromosome with origin in a leucoplast." [SO:xp]	4001724	SOFA	SOFA	sequence	5	SO	sequence_feature	leucoplast_chromosome
SO:0000824	\N	\N	"A chromosome originating in a macronucleus." [SO:xp]	SO:0000824	"A chromosome originating in a macronucleus." [SO:xp]	45742	\N	\N	sequence	0	SO	macronuclear_chromosome	macronuclear_chromosome
SO:0000340	SO:0000824	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000824	"A chromosome originating in a macronucleus." [SO:xp]	490417	\N	SOFA	sequence	1	SO	chromosome	macronuclear_chromosome
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000824	"A chromosome originating in a macronucleus." [SO:xp]	1072914	SOFA	SOFA	sequence	2	SO	replicon	macronuclear_chromosome
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000824	"A chromosome originating in a macronucleus." [SO:xp]	1903960	SOFA	SOFA	sequence	3	SO	biological_region	macronuclear_chromosome
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000824	"A chromosome originating in a macronucleus." [SO:xp]	2928422	SOFA	SOFA	sequence	4	SO	region	macronuclear_chromosome
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000824	"A chromosome originating in a macronucleus." [SO:xp]	4001725	SOFA	SOFA	sequence	5	SO	sequence_feature	macronuclear_chromosome
SO:0000825	\N	\N	"A chromosome originating in a micronucleus." [SO:xp]	SO:0000825	"A chromosome originating in a micronucleus." [SO:xp]	45743	\N	\N	sequence	0	SO	micronuclear_chromosome	micronuclear_chromosome
SO:0000340	SO:0000825	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000825	"A chromosome originating in a micronucleus." [SO:xp]	490418	\N	SOFA	sequence	1	SO	chromosome	micronuclear_chromosome
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000825	"A chromosome originating in a micronucleus." [SO:xp]	1072915	SOFA	SOFA	sequence	2	SO	replicon	micronuclear_chromosome
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000825	"A chromosome originating in a micronucleus." [SO:xp]	1903961	SOFA	SOFA	sequence	3	SO	biological_region	micronuclear_chromosome
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000825	"A chromosome originating in a micronucleus." [SO:xp]	2928423	SOFA	SOFA	sequence	4	SO	region	micronuclear_chromosome
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000825	"A chromosome originating in a micronucleus." [SO:xp]	4001726	SOFA	SOFA	sequence	5	SO	sequence_feature	micronuclear_chromosome
SO:0000828	\N	\N	"A chromosome originating in a nucleus." [SO:xp]	SO:0000828	"A chromosome originating in a nucleus." [SO:xp]	45744	\N	\N	sequence	0	SO	nuclear_chromosome	nuclear_chromosome
SO:0000340	SO:0000828	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000828	"A chromosome originating in a nucleus." [SO:xp]	490419	\N	SOFA	sequence	1	SO	chromosome	nuclear_chromosome
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000828	"A chromosome originating in a nucleus." [SO:xp]	1072916	SOFA	SOFA	sequence	2	SO	replicon	nuclear_chromosome
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000828	"A chromosome originating in a nucleus." [SO:xp]	1903962	SOFA	SOFA	sequence	3	SO	biological_region	nuclear_chromosome
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000828	"A chromosome originating in a nucleus." [SO:xp]	2928424	SOFA	SOFA	sequence	4	SO	region	nuclear_chromosome
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000828	"A chromosome originating in a nucleus." [SO:xp]	4001727	SOFA	SOFA	sequence	5	SO	sequence_feature	nuclear_chromosome
SO:0000829	\N	\N	"A chromosome originating in a nucleomorph." [SO:xp]	SO:0000829	"A chromosome originating in a nucleomorph." [SO:xp]	45745	\N	\N	sequence	0	SO	nucleomorphic_chromosome	nucleomorphic_chromosome
SO:0000340	SO:0000829	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000829	"A chromosome originating in a nucleomorph." [SO:xp]	490420	\N	SOFA	sequence	1	SO	chromosome	nucleomorphic_chromosome
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000829	"A chromosome originating in a nucleomorph." [SO:xp]	1072917	SOFA	SOFA	sequence	2	SO	replicon	nucleomorphic_chromosome
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000829	"A chromosome originating in a nucleomorph." [SO:xp]	1903963	SOFA	SOFA	sequence	3	SO	biological_region	nucleomorphic_chromosome
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000829	"A chromosome originating in a nucleomorph." [SO:xp]	2928425	SOFA	SOFA	sequence	4	SO	region	nucleomorphic_chromosome
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000829	"A chromosome originating in a nucleomorph." [SO:xp]	4001728	SOFA	SOFA	sequence	5	SO	sequence_feature	nucleomorphic_chromosome
SO:0000830	\N	SOFA	"A region of a chromosome." [SO:ke]	SO:0000830	"A region of a chromosome." [SO:ke]	45746	\N	SOFA	sequence	0	SO	chromosome_part	chromosome_part
SO:0000340	SO:0000830	SOFA	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000830	"A region of a chromosome." [SO:ke]	490421	SOFA	SOFA	sequence	1	SO	chromosome	chromosome_part
SO:0001411	SO:0000830	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000830	"A region of a chromosome." [SO:ke]	490422	SOFA	SOFA	sequence	1	SO	biological_region	chromosome_part
SO:0001235	SO:0000340	SOFA	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000830	"A region of a chromosome." [SO:ke]	1072918	SOFA	SOFA	sequence	2	SO	replicon	chromosome_part
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000830	"A region of a chromosome." [SO:ke]	2928426	SOFA	SOFA	sequence	4	SO	region	chromosome_part
SO:0001411	SO:0001235	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000830	"A region of a chromosome." [SO:ke]	1903964	SOFA	SOFA	sequence	3	SO	biological_region	chromosome_part
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000830	"A region of a chromosome." [SO:ke]	2999121	SOFA	SOFA	sequence	5	SO	sequence_feature	chromosome_part
SO:0000831	\N	SOFA	"A region of a gene." [SO:ke]	SO:0000831	"A region of a gene." [SO:ke]	45747	\N	SOFA	sequence	0	SO	gene_member_region	gene_member_region
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000831	"A region of a gene." [SO:ke]	490423	SOFA	SOFA	sequence	1	SO	biological_region	gene_member_region
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000831	"A region of a gene." [SO:ke]	1072920	SOFA	SOFA	sequence	2	SO	region	gene_member_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000831	"A region of a gene." [SO:ke]	1903966	SOFA	SOFA	sequence	3	SO	sequence_feature	gene_member_region
SO:0000833	\N	SOFA	"A region of a transcript." [SO:ke]	SO:0000833	"A region of a transcript." [SO:ke]	45748	\N	SOFA	sequence	0	SO	transcript_region	transcript_region
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000833	"A region of a transcript." [SO:ke]	490424	SOFA	SOFA	sequence	1	SO	transcript	transcript_region
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000833	"A region of a transcript." [SO:ke]	490425	SOFA	SOFA	sequence	1	SO	biological_region	transcript_region
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000833	"A region of a transcript." [SO:ke]	1072921	SOFA	SOFA	sequence	2	SO	gene_member_region	transcript_region
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000833	"A region of a transcript." [SO:ke]	2928427	SOFA	SOFA	sequence	4	SO	region	transcript_region
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000833	"A region of a transcript." [SO:ke]	1903967	SOFA	SOFA	sequence	3	SO	biological_region	transcript_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000833	"A region of a transcript." [SO:ke]	2999122	SOFA	SOFA	sequence	5	SO	sequence_feature	transcript_region
SO:0000834	\N	SOFA	"A region of a mature transcript." [SO:ke]	SO:0000834	"A region of a mature transcript." [SO:ke]	45749	\N	SOFA	sequence	0	SO	mature_transcript_region	mature_transcript_region
SO:0000833	SO:0000834	SOFA	"A region of a transcript." [SO:ke]	SO:0000834	"A region of a mature transcript." [SO:ke]	490426	SOFA	SOFA	sequence	1	SO	transcript_region	mature_transcript_region
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000834	"A region of a mature transcript." [SO:ke]	1072923	SOFA	SOFA	sequence	2	SO	transcript	mature_transcript_region
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000834	"A region of a mature transcript." [SO:ke]	1072924	SOFA	SOFA	sequence	2	SO	biological_region	mature_transcript_region
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000834	"A region of a mature transcript." [SO:ke]	1903969	SOFA	SOFA	sequence	3	SO	gene_member_region	mature_transcript_region
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000834	"A region of a mature transcript." [SO:ke]	4001729	SOFA	SOFA	sequence	5	SO	region	mature_transcript_region
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000834	"A region of a mature transcript." [SO:ke]	2928428	SOFA	SOFA	sequence	4	SO	biological_region	mature_transcript_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000834	"A region of a mature transcript." [SO:ke]	4132315	SOFA	SOFA	sequence	6	SO	sequence_feature	mature_transcript_region
SO:0000835	\N	SOFA	"A part of a primary transcript." [SO:ke]	SO:0000835	"A part of a primary transcript." [SO:ke]	45750	\N	SOFA	sequence	0	SO	primary_transcript_region	primary_transcript_region
SO:0000185	SO:0000835	SOFA	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000835	"A part of a primary transcript." [SO:ke]	490427	SOFA	SOFA	sequence	1	SO	primary_transcript	primary_transcript_region
SO:0000833	SO:0000835	SOFA	"A region of a transcript." [SO:ke]	SO:0000835	"A part of a primary transcript." [SO:ke]	490428	SOFA	SOFA	sequence	1	SO	transcript_region	primary_transcript_region
SO:0000673	SO:0000185	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000835	"A part of a primary transcript." [SO:ke]	1072925	SOFA	SOFA	sequence	2	SO	transcript	primary_transcript_region
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000835	"A part of a primary transcript." [SO:ke]	1072926	SOFA	SOFA	sequence	2	SO	transcript	primary_transcript_region
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000835	"A part of a primary transcript." [SO:ke]	1072927	SOFA	SOFA	sequence	2	SO	biological_region	primary_transcript_region
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000835	"A part of a primary transcript." [SO:ke]	1903971	SOFA	SOFA	sequence	3	SO	gene_member_region	primary_transcript_region
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000835	"A part of a primary transcript." [SO:ke]	4001730	SOFA	SOFA	sequence	5	SO	region	primary_transcript_region
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000835	"A part of a primary transcript." [SO:ke]	2928430	SOFA	SOFA	sequence	4	SO	biological_region	primary_transcript_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000835	"A part of a primary transcript." [SO:ke]	4132316	SOFA	SOFA	sequence	6	SO	sequence_feature	primary_transcript_region
SO:0000836	\N	SOFA	"A region of an mRNA." [SO:cb]	SO:0000836	"A region of an mRNA." [SO:cb]	45751	\N	SOFA	sequence	0	SO	mRNA_region	mRNA_region
SO:0000234	SO:0000836	SOFA	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000836	"A region of an mRNA." [SO:cb]	490429	SOFA	SOFA	sequence	1	SO	mRNA	mRNA_region
SO:0000834	SO:0000836	SOFA	"A region of a mature transcript." [SO:ke]	SO:0000836	"A region of an mRNA." [SO:cb]	490430	SOFA	SOFA	sequence	1	SO	mature_transcript_region	mRNA_region
SO:0000233	SO:0000234	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000836	"A region of an mRNA." [SO:cb]	1072928	SOFA	SOFA	sequence	2	SO	mature_transcript	mRNA_region
SO:0000833	SO:0000834	SOFA	"A region of a transcript." [SO:ke]	SO:0000836	"A region of an mRNA." [SO:cb]	1072929	SOFA	SOFA	sequence	2	SO	transcript_region	mRNA_region
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000836	"A region of an mRNA." [SO:cb]	1903973	SOFA	SOFA	sequence	3	SO	transcript	mRNA_region
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000836	"A region of an mRNA." [SO:cb]	1903974	SOFA	SOFA	sequence	3	SO	transcript	mRNA_region
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000836	"A region of an mRNA." [SO:cb]	1903975	SOFA	SOFA	sequence	3	SO	biological_region	mRNA_region
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000836	"A region of an mRNA." [SO:cb]	2928432	SOFA	SOFA	sequence	4	SO	gene_member_region	mRNA_region
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000836	"A region of an mRNA." [SO:cb]	4966206	SOFA	SOFA	sequence	6	SO	region	mRNA_region
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000836	"A region of an mRNA." [SO:cb]	4001731	SOFA	SOFA	sequence	5	SO	biological_region	mRNA_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000836	"A region of an mRNA." [SO:cb]	5180705	SOFA	SOFA	sequence	7	SO	sequence_feature	mRNA_region
SO:0000837	\N	SOFA	"A region of UTR." [SO:ke]	SO:0000837	"A region of UTR." [SO:ke]	45752	\N	SOFA	sequence	0	SO	UTR_region	UTR_region
SO:0000836	SO:0000837	SOFA	"A region of an mRNA." [SO:cb]	SO:0000837	"A region of UTR." [SO:ke]	490431	SOFA	SOFA	sequence	1	SO	mRNA_region	UTR_region
SO:0000234	SO:0000836	SOFA	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000837	"A region of UTR." [SO:ke]	1072930	SOFA	SOFA	sequence	2	SO	mRNA	UTR_region
SO:0000834	SO:0000836	SOFA	"A region of a mature transcript." [SO:ke]	SO:0000837	"A region of UTR." [SO:ke]	1072931	SOFA	SOFA	sequence	2	SO	mature_transcript_region	UTR_region
SO:0000233	SO:0000234	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000837	"A region of UTR." [SO:ke]	1903976	SOFA	SOFA	sequence	3	SO	mature_transcript	UTR_region
SO:0000833	SO:0000834	SOFA	"A region of a transcript." [SO:ke]	SO:0000837	"A region of UTR." [SO:ke]	1903977	SOFA	SOFA	sequence	3	SO	transcript_region	UTR_region
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000837	"A region of UTR." [SO:ke]	2928434	SOFA	SOFA	sequence	4	SO	transcript	UTR_region
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000837	"A region of UTR." [SO:ke]	2928435	SOFA	SOFA	sequence	4	SO	transcript	UTR_region
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000837	"A region of UTR." [SO:ke]	2928436	SOFA	SOFA	sequence	4	SO	biological_region	UTR_region
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000837	"A region of UTR." [SO:ke]	4001733	SOFA	SOFA	sequence	5	SO	gene_member_region	UTR_region
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000837	"A region of UTR." [SO:ke]	5741070	SOFA	SOFA	sequence	7	SO	region	UTR_region
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000837	"A region of UTR." [SO:ke]	4966207	SOFA	SOFA	sequence	6	SO	biological_region	UTR_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000837	"A region of UTR." [SO:ke]	5996406	SOFA	SOFA	sequence	8	SO	sequence_feature	UTR_region
SO:0000838	\N	\N	"A region of an rRNA primary transcript." [SO:ke]	SO:0000838	"A region of an rRNA primary transcript." [SO:ke]	45753	\N	\N	sequence	0	SO	rRNA_primary_transcript_region	rRNA_primary_transcript_region
SO:0000209	SO:0000838	\N	"A primary transcript encoding a ribosomal RNA." [SO:ke]	SO:0000838	"A region of an rRNA primary transcript." [SO:ke]	490432	\N	SOFA	sequence	1	SO	rRNA_primary_transcript	rRNA_primary_transcript_region
SO:0000835	SO:0000838	\N	"A part of a primary transcript." [SO:ke]	SO:0000838	"A region of an rRNA primary transcript." [SO:ke]	490433	\N	SOFA	sequence	1	SO	primary_transcript_region	rRNA_primary_transcript_region
SO:0000483	SO:0000209	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0000838	"A region of an rRNA primary transcript." [SO:ke]	1072932	SOFA	SOFA	sequence	2	SO	nc_primary_transcript	rRNA_primary_transcript_region
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000838	"A region of an rRNA primary transcript." [SO:ke]	1072933	SOFA	SOFA	sequence	2	SO	primary_transcript	rRNA_primary_transcript_region
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0000838	"A region of an rRNA primary transcript." [SO:ke]	1072934	SOFA	SOFA	sequence	2	SO	transcript_region	rRNA_primary_transcript_region
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000838	"A region of an rRNA primary transcript." [SO:ke]	1903978	SOFA	SOFA	sequence	3	SO	primary_transcript	rRNA_primary_transcript_region
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000838	"A region of an rRNA primary transcript." [SO:ke]	2928437	SOFA	SOFA	sequence	4	SO	transcript	rRNA_primary_transcript_region
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000838	"A region of an rRNA primary transcript." [SO:ke]	1903980	SOFA	SOFA	sequence	3	SO	transcript	rRNA_primary_transcript_region
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000838	"A region of an rRNA primary transcript." [SO:ke]	1903981	SOFA	SOFA	sequence	3	SO	biological_region	rRNA_primary_transcript_region
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000838	"A region of an rRNA primary transcript." [SO:ke]	3173899	SOFA	SOFA	sequence	5	SO	gene_member_region	rRNA_primary_transcript_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000838	"A region of an rRNA primary transcript." [SO:ke]	5407413	SOFA	SOFA	sequence	7	SO	region	rRNA_primary_transcript_region
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000838	"A region of an rRNA primary transcript." [SO:ke]	4385753	SOFA	SOFA	sequence	6	SO	biological_region	rRNA_primary_transcript_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000838	"A region of an rRNA primary transcript." [SO:ke]	5876437	SOFA	SOFA	sequence	8	SO	sequence_feature	rRNA_primary_transcript_region
SO:0000839	\N	biosapiens,SOFA	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0000839	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	45754	\N	biosapiens,SOFA	sequence	0	SO	polypeptide_region	polypeptide_region
SO:0000104	SO:0000839	biosapiens,SOFA	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0000839	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	490434	biosapiens,SOFA	SOFA	sequence	1	SO	polypeptide	polypeptide_region
SO:0001411	SO:0000839	biosapiens,SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000839	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	490435	biosapiens,SOFA	SOFA	sequence	1	SO	biological_region	polypeptide_region
SO:0001411	SO:0000104	biosapiens,SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000839	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	1072935	SOFA	SOFA	sequence	2	SO	biological_region	polypeptide_region
SO:0000001	SO:0001411	biosapiens,SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000839	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	1903982	SOFA	SOFA	sequence	3	SO	region	polypeptide_region
SO:0000110	SO:0000001	biosapiens,SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000839	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	2018223	SOFA	SOFA	sequence	4	SO	sequence_feature	polypeptide_region
SO:0000840	\N	\N	"A region of a repeated sequence." [SO:ke]	SO:0000840	"A region of a repeated sequence." [SO:ke]	45755	\N	\N	sequence	0	SO	repeat_component	repeat_component
SO:0001412	SO:0000840	\N	"A region that is defined according to its relations with other regions within the same sequence." [SO:cb]	SO:0000840	"A region of a repeated sequence." [SO:ke]	490436	\N	SOFA	sequence	1	SO	topologically_defined_region	repeat_component
SO:0000001	SO:0001412	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000840	"A region of a repeated sequence." [SO:ke]	1072937	SOFA	SOFA	sequence	2	SO	region	repeat_component
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000840	"A region of a repeated sequence." [SO:ke]	1903984	SOFA	SOFA	sequence	3	SO	sequence_feature	repeat_component
SO:0000841	\N	SOFA	"A region within an intron." [SO:ke]	SO:0000841	"A region within an intron." [SO:ke]	45756	\N	SOFA	sequence	0	SO	spliceosomal_intron_region	spliceosomal_intron_region
SO:0000662	SO:0000841	SOFA	"An intron which is spliced by the spliceosome." [SO:ke]	SO:0000841	"A region within an intron." [SO:ke]	490437	SOFA	SOFA	sequence	1	SO	spliceosomal_intron	spliceosomal_intron_region
SO:0000835	SO:0000841	SOFA	"A part of a primary transcript." [SO:ke]	SO:0000841	"A region within an intron." [SO:ke]	490438	SOFA	SOFA	sequence	1	SO	primary_transcript_region	spliceosomal_intron_region
SO:0000188	SO:0000662	SOFA	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000841	"A region within an intron." [SO:ke]	1072938	SOFA	SOFA	sequence	2	SO	intron	spliceosomal_intron_region
SO:0000185	SO:0000835	SOFA	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000841	"A region within an intron." [SO:ke]	2928440	SOFA	SOFA	sequence	4	SO	primary_transcript	spliceosomal_intron_region
SO:0000833	SO:0000835	SOFA	"A region of a transcript." [SO:ke]	SO:0000841	"A region within an intron." [SO:ke]	2928441	SOFA	SOFA	sequence	4	SO	transcript_region	spliceosomal_intron_region
SO:0000835	SO:0000188	SOFA	"A part of a primary transcript." [SO:ke]	SO:0000841	"A region within an intron." [SO:ke]	1903985	SOFA	SOFA	sequence	3	SO	primary_transcript_region	spliceosomal_intron_region
SO:0000673	SO:0000185	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000841	"A region within an intron." [SO:ke]	2999123	SOFA	SOFA	sequence	5	SO	transcript	spliceosomal_intron_region
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000841	"A region within an intron." [SO:ke]	2999124	SOFA	SOFA	sequence	5	SO	transcript	spliceosomal_intron_region
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000841	"A region within an intron." [SO:ke]	2999125	SOFA	SOFA	sequence	5	SO	biological_region	spliceosomal_intron_region
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000841	"A region within an intron." [SO:ke]	4132317	SOFA	SOFA	sequence	6	SO	gene_member_region	spliceosomal_intron_region
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000841	"A region within an intron." [SO:ke]	5996407	SOFA	SOFA	sequence	8	SO	region	spliceosomal_intron_region
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000841	"A region within an intron." [SO:ke]	5180707	SOFA	SOFA	sequence	7	SO	biological_region	spliceosomal_intron_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000841	"A region within an intron." [SO:ke]	6409697	SOFA	SOFA	sequence	9	SO	sequence_feature	spliceosomal_intron_region
SO:0000842	\N	SOFA	"" []	SO:0000842	"" []	45757	\N	SOFA	sequence	0	SO	gene_component_region	gene_component_region
SO:0000704	SO:0000842	SOFA	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000842	"" []	490439	SOFA	SOFA	sequence	1	SO	gene	gene_component_region
SO:0001411	SO:0000842	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000842	"" []	490440	SOFA	SOFA	sequence	1	SO	biological_region	gene_component_region
SO:0001411	SO:0000704	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000842	"" []	1072941	SOFA	SOFA	sequence	2	SO	biological_region	gene_component_region
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000842	"" []	1903989	SOFA	SOFA	sequence	3	SO	region	gene_component_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000842	"" []	2018224	SOFA	SOFA	sequence	4	SO	sequence_feature	gene_component_region
SO:0000847	\N	\N	"A region of a tmRNA." [SO:cb]	SO:0000847	"A region of a tmRNA." [SO:cb]	45758	\N	\N	sequence	0	SO	tmRNA_region	tmRNA_region
SO:0000584	SO:0000847	\N	"A tmRNA liberates a mRNA from a stalled ribosome. To accomplish this part of the tmRNA is used as a reading frame that ends in a translation stop signal. The broken mRNA is replaced in the ribosome by the tmRNA and translation of the tmRNA leads to addition of a proteolysis tag to the incomplete protein enabling recognition by a protease. Recently a number of permuted tmRNAs genes have been found encoded in two parts. TmRNAs have been identified in eubacteria and some chloroplasts but are absent from archeal and Eukaryote nuclear genomes." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00023]	SO:0000847	"A region of a tmRNA." [SO:cb]	490441	\N	\N	sequence	1	SO	tmRNA	tmRNA_region
SO:0000834	SO:0000847	\N	"A region of a mature transcript." [SO:ke]	SO:0000847	"A region of a tmRNA." [SO:cb]	490442	\N	SOFA	sequence	1	SO	mature_transcript_region	tmRNA_region
SO:0000370	SO:0000584	\N	"A non-coding RNA less than 200 nucleotides long, usually with a specific secondary structure, that acts to regulate gene expression. These include short ncRNAs such as piRNA, miRNA and siRNAs (among others)." [PMID:28541282, PomBase:al, SO:ma]	SO:0000847	"A region of a tmRNA." [SO:cb]	1072943	\N	SOFA	sequence	2	SO	small_regulatory_ncRNA	tmRNA_region
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0000847	"A region of a tmRNA." [SO:cb]	1072944	SOFA	SOFA	sequence	2	SO	transcript_region	tmRNA_region
SO:0000655	SO:0000370	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000847	"A region of a tmRNA." [SO:cb]	1903991	SOFA	SOFA	sequence	3	SO	ncRNA	tmRNA_region
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000847	"A region of a tmRNA." [SO:cb]	1903992	SOFA	SOFA	sequence	3	SO	transcript	tmRNA_region
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000847	"A region of a tmRNA." [SO:cb]	1903993	SOFA	SOFA	sequence	3	SO	biological_region	tmRNA_region
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000847	"A region of a tmRNA." [SO:cb]	2928444	SOFA	SOFA	sequence	4	SO	mature_transcript	tmRNA_region
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000847	"A region of a tmRNA." [SO:cb]	4966210	SOFA	SOFA	sequence	6	SO	gene_member_region	tmRNA_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000847	"A region of a tmRNA." [SO:cb]	5996408	SOFA	SOFA	sequence	8	SO	region	tmRNA_region
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000847	"A region of a tmRNA." [SO:cb]	4001739	SOFA	SOFA	sequence	5	SO	transcript	tmRNA_region
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000847	"A region of a tmRNA." [SO:cb]	5180709	SOFA	SOFA	sequence	7	SO	biological_region	tmRNA_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000847	"A region of a tmRNA." [SO:cb]	6409698	SOFA	SOFA	sequence	9	SO	sequence_feature	tmRNA_region
SO:0000848	\N	\N	"" []	SO:0000848	"" []	45759	\N	\N	sequence	0	SO	LTR_component	LTR_component
SO:0000286	SO:0000848	\N	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000848	"" []	490443	\N	\N	sequence	1	SO	long_terminal_repeat	LTR_component
SO:0000840	SO:0000848	\N	"A region of a repeated sequence." [SO:ke]	SO:0000848	"" []	490444	\N	\N	sequence	1	SO	repeat_component	LTR_component
SO:0000186	SO:0000286	\N	"A retrotransposon flanked by long terminal repeat sequences." [SO:ke]	SO:0000848	"" []	1072945	\N	\N	sequence	2	SO	LTR_retrotransposon	LTR_component
SO:0000657	SO:0000286	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000848	"" []	1072946	\N	SOFA	sequence	2	SO	repeat_region	LTR_component
SO:0001412	SO:0000840	\N	"A region that is defined according to its relations with other regions within the same sequence." [SO:cb]	SO:0000848	"" []	1072947	\N	SOFA	sequence	2	SO	topologically_defined_region	LTR_component
SO:0000180	SO:0000186	\N	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	SO:0000848	"" []	1903994	\N	\N	sequence	3	SO	retrotransposon	LTR_component
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000848	"" []	1903995	SOFA	SOFA	sequence	3	SO	biological_region	LTR_component
SO:0000001	SO:0001412	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000848	"" []	1903996	SOFA	SOFA	sequence	3	SO	region	LTR_component
SO:0000101	SO:0000180	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000848	"" []	2928447	\N	SOFA	sequence	4	SO	transposable_element	LTR_component
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000848	"" []	6310977	SOFA	SOFA	sequence	8	SO	region	LTR_component
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000848	"" []	6409699	SOFA	SOFA	sequence	9	SO	sequence_feature	LTR_component
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000848	"" []	4001742	SOFA	SOFA	sequence	5	SO	integrated_mobile_genetic_element	LTR_component
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000848	"" []	4966212	SOFA	SOFA	sequence	6	SO	mobile_genetic_element	LTR_component
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000848	"" []	5741071	SOFA	SOFA	sequence	7	SO	biological_region	LTR_component
SO:0000849	\N	\N	"" []	SO:0000849	"" []	45760	\N	\N	sequence	0	SO	three_prime_LTR_component	three_prime_LTR_component
SO:0000426	SO:0000849	\N	"" []	SO:0000849	"" []	490445	\N	\N	sequence	1	SO	three_prime_LTR	three_prime_LTR_component
SO:0000848	SO:0000849	\N	"" []	SO:0000849	"" []	490446	\N	\N	sequence	1	SO	LTR_component	three_prime_LTR_component
SO:0000286	SO:0000426	\N	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000849	"" []	1072948	\N	\N	sequence	2	SO	long_terminal_repeat	three_prime_LTR_component
SO:0000286	SO:0000848	\N	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000849	"" []	1072949	\N	\N	sequence	2	SO	long_terminal_repeat	three_prime_LTR_component
SO:0000840	SO:0000848	\N	"A region of a repeated sequence." [SO:ke]	SO:0000849	"" []	1072950	\N	\N	sequence	2	SO	repeat_component	three_prime_LTR_component
SO:0000186	SO:0000286	\N	"A retrotransposon flanked by long terminal repeat sequences." [SO:ke]	SO:0000849	"" []	1903997	\N	\N	sequence	3	SO	LTR_retrotransposon	three_prime_LTR_component
SO:0000657	SO:0000286	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000849	"" []	1903998	\N	SOFA	sequence	3	SO	repeat_region	three_prime_LTR_component
SO:0001412	SO:0000840	\N	"A region that is defined according to its relations with other regions within the same sequence." [SO:cb]	SO:0000849	"" []	1903999	\N	SOFA	sequence	3	SO	topologically_defined_region	three_prime_LTR_component
SO:0000180	SO:0000186	\N	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	SO:0000849	"" []	2928450	\N	\N	sequence	4	SO	retrotransposon	three_prime_LTR_component
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000849	"" []	2928451	SOFA	SOFA	sequence	4	SO	biological_region	three_prime_LTR_component
SO:0000001	SO:0001412	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000849	"" []	2928452	SOFA	SOFA	sequence	4	SO	region	three_prime_LTR_component
SO:0000101	SO:0000180	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000849	"" []	4001744	\N	SOFA	sequence	5	SO	transposable_element	three_prime_LTR_component
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000849	"" []	6699323	SOFA	SOFA	sequence	9	SO	region	three_prime_LTR_component
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000849	"" []	6807579	SOFA	SOFA	sequence	10	SO	sequence_feature	three_prime_LTR_component
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000849	"" []	4966213	SOFA	SOFA	sequence	6	SO	integrated_mobile_genetic_element	three_prime_LTR_component
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000849	"" []	5741072	SOFA	SOFA	sequence	7	SO	mobile_genetic_element	three_prime_LTR_component
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000849	"" []	6310978	SOFA	SOFA	sequence	8	SO	biological_region	three_prime_LTR_component
SO:0000850	\N	\N	"" []	SO:0000850	"" []	45761	\N	\N	sequence	0	SO	five_prime_LTR_component	five_prime_LTR_component
SO:0000425	SO:0000850	\N	"" []	SO:0000850	"" []	490447	\N	\N	sequence	1	SO	five_prime_LTR	five_prime_LTR_component
SO:0000848	SO:0000850	\N	"" []	SO:0000850	"" []	490448	\N	\N	sequence	1	SO	LTR_component	five_prime_LTR_component
SO:0000286	SO:0000425	\N	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000850	"" []	1072951	\N	\N	sequence	2	SO	long_terminal_repeat	five_prime_LTR_component
SO:0000286	SO:0000848	\N	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000850	"" []	1072952	\N	\N	sequence	2	SO	long_terminal_repeat	five_prime_LTR_component
SO:0000840	SO:0000848	\N	"A region of a repeated sequence." [SO:ke]	SO:0000850	"" []	1072953	\N	\N	sequence	2	SO	repeat_component	five_prime_LTR_component
SO:0000186	SO:0000286	\N	"A retrotransposon flanked by long terminal repeat sequences." [SO:ke]	SO:0000850	"" []	1904000	\N	\N	sequence	3	SO	LTR_retrotransposon	five_prime_LTR_component
SO:0000657	SO:0000286	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0000850	"" []	1904001	\N	SOFA	sequence	3	SO	repeat_region	five_prime_LTR_component
SO:0001412	SO:0000840	\N	"A region that is defined according to its relations with other regions within the same sequence." [SO:cb]	SO:0000850	"" []	1904002	\N	SOFA	sequence	3	SO	topologically_defined_region	five_prime_LTR_component
SO:0000180	SO:0000186	\N	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	SO:0000850	"" []	2928453	\N	\N	sequence	4	SO	retrotransposon	five_prime_LTR_component
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000850	"" []	2928454	SOFA	SOFA	sequence	4	SO	biological_region	five_prime_LTR_component
SO:0000001	SO:0001412	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000850	"" []	2928455	SOFA	SOFA	sequence	4	SO	region	five_prime_LTR_component
SO:0000101	SO:0000180	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000850	"" []	4001747	\N	SOFA	sequence	5	SO	transposable_element	five_prime_LTR_component
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000850	"" []	6699324	SOFA	SOFA	sequence	9	SO	region	five_prime_LTR_component
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000850	"" []	6807580	SOFA	SOFA	sequence	10	SO	sequence_feature	five_prime_LTR_component
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000850	"" []	4966215	SOFA	SOFA	sequence	6	SO	integrated_mobile_genetic_element	five_prime_LTR_component
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000850	"" []	5741073	SOFA	SOFA	sequence	7	SO	mobile_genetic_element	five_prime_LTR_component
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000850	"" []	6310979	SOFA	SOFA	sequence	8	SO	biological_region	five_prime_LTR_component
SO:0000851	\N	SOFA	"A region of a CDS." [SO:cb]	SO:0000851	"A region of a CDS." [SO:cb]	45762	\N	SOFA	sequence	0	SO	CDS_region	CDS_region
SO:0000316	SO:0000851	SOFA	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	SO:0000851	"A region of a CDS." [SO:cb]	490449	SOFA	SOFA	sequence	1	SO	CDS	CDS_region
SO:0000836	SO:0000851	SOFA	"A region of an mRNA." [SO:cb]	SO:0000851	"A region of a CDS." [SO:cb]	490450	SOFA	SOFA	sequence	1	SO	mRNA_region	CDS_region
SO:0000836	SO:0000316	SOFA	"A region of an mRNA." [SO:cb]	SO:0000851	"A region of a CDS." [SO:cb]	1072954	SOFA	SOFA	sequence	2	SO	mRNA_region	CDS_region
SO:0000234	SO:0000836	SOFA	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000851	"A region of a CDS." [SO:cb]	1904003	SOFA	SOFA	sequence	3	SO	mRNA	CDS_region
SO:0000834	SO:0000836	SOFA	"A region of a mature transcript." [SO:ke]	SO:0000851	"A region of a CDS." [SO:cb]	1904004	SOFA	SOFA	sequence	3	SO	mature_transcript_region	CDS_region
SO:0000233	SO:0000234	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000851	"A region of a CDS." [SO:cb]	2018225	SOFA	SOFA	sequence	4	SO	mature_transcript	CDS_region
SO:0000833	SO:0000834	SOFA	"A region of a transcript." [SO:ke]	SO:0000851	"A region of a CDS." [SO:cb]	2018226	SOFA	SOFA	sequence	4	SO	transcript_region	CDS_region
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000851	"A region of a CDS." [SO:cb]	3173900	SOFA	SOFA	sequence	5	SO	transcript	CDS_region
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000851	"A region of a CDS." [SO:cb]	3173901	SOFA	SOFA	sequence	5	SO	transcript	CDS_region
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000851	"A region of a CDS." [SO:cb]	3173902	SOFA	SOFA	sequence	5	SO	biological_region	CDS_region
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000851	"A region of a CDS." [SO:cb]	4385754	SOFA	SOFA	sequence	6	SO	gene_member_region	CDS_region
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000851	"A region of a CDS." [SO:cb]	6146636	SOFA	SOFA	sequence	8	SO	region	CDS_region
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000851	"A region of a CDS." [SO:cb]	5407414	SOFA	SOFA	sequence	7	SO	biological_region	CDS_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000851	"A region of a CDS." [SO:cb]	6469735	SOFA	SOFA	sequence	9	SO	sequence_feature	CDS_region
SO:0000852	\N	SOFA	"A region of an exon." [RSC:cb]	SO:0000852	"A region of an exon." [RSC:cb]	45763	\N	SOFA	sequence	0	SO	exon_region	exon_region
SO:0000147	SO:0000852	SOFA	"A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing." [SO:ke]	SO:0000852	"A region of an exon." [RSC:cb]	490451	SOFA	SOFA	sequence	1	SO	exon	exon_region
SO:0000833	SO:0000852	SOFA	"A region of a transcript." [SO:ke]	SO:0000852	"A region of an exon." [RSC:cb]	490452	SOFA	SOFA	sequence	1	SO	transcript_region	exon_region
SO:0000833	SO:0000147	SOFA	"A region of a transcript." [SO:ke]	SO:0000852	"A region of an exon." [RSC:cb]	1072957	SOFA	SOFA	sequence	2	SO	transcript_region	exon_region
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000852	"A region of an exon." [RSC:cb]	1904007	SOFA	SOFA	sequence	3	SO	transcript	exon_region
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000852	"A region of an exon." [RSC:cb]	1904008	SOFA	SOFA	sequence	3	SO	biological_region	exon_region
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0000852	"A region of an exon." [RSC:cb]	2018227	SOFA	SOFA	sequence	4	SO	gene_member_region	exon_region
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000852	"A region of an exon." [RSC:cb]	4385756	SOFA	SOFA	sequence	6	SO	region	exon_region
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000852	"A region of an exon." [RSC:cb]	3173903	SOFA	SOFA	sequence	5	SO	biological_region	exon_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000852	"A region of an exon." [RSC:cb]	5059246	SOFA	SOFA	sequence	7	SO	sequence_feature	exon_region
SO:0000853	\N	\N	"A region that is homologous to another region." [SO:ke]	SO:0000853	"A region that is homologous to another region." [SO:ke]	45764	\N	\N	sequence	0	SO	homologous_region	homologous_region
SO:0000330	SO:0000853	\N	"Region of sequence similarity by descent from a common ancestor." [SO:ke]	SO:0000853	"A region that is homologous to another region." [SO:ke]	490453	\N	SOFA	sequence	1	SO	conserved_region	homologous_region
SO:0001410	SO:0000330	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000853	"A region that is homologous to another region." [SO:ke]	1072960	SOFA	SOFA	sequence	2	SO	experimental_feature	homologous_region
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000853	"A region that is homologous to another region." [SO:ke]	1904011	SOFA	SOFA	sequence	3	SO	region	homologous_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000853	"A region that is homologous to another region." [SO:ke]	2928461	SOFA	SOFA	sequence	4	SO	sequence_feature	homologous_region
SO:0000854	\N	\N	"A homologous_region that is paralogous to another region." [SO:ke]	SO:0000854	"A homologous_region that is paralogous to another region." [SO:ke]	45765	\N	\N	sequence	0	SO	paralogous_region	paralogous_region
SO:0000853	SO:0000854	\N	"A region that is homologous to another region." [SO:ke]	SO:0000854	"A homologous_region that is paralogous to another region." [SO:ke]	490454	\N	\N	sequence	1	SO	homologous_region	paralogous_region
SO:0000330	SO:0000853	\N	"Region of sequence similarity by descent from a common ancestor." [SO:ke]	SO:0000854	"A homologous_region that is paralogous to another region." [SO:ke]	1072961	\N	SOFA	sequence	2	SO	conserved_region	paralogous_region
SO:0001410	SO:0000330	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000854	"A homologous_region that is paralogous to another region." [SO:ke]	1904012	SOFA	SOFA	sequence	3	SO	experimental_feature	paralogous_region
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000854	"A homologous_region that is paralogous to another region." [SO:ke]	2928462	SOFA	SOFA	sequence	4	SO	region	paralogous_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000854	"A homologous_region that is paralogous to another region." [SO:ke]	4001753	SOFA	SOFA	sequence	5	SO	sequence_feature	paralogous_region
SO:0000855	\N	\N	"A homologous_region that is orthologous to another region." [SO:ke]	SO:0000855	"A homologous_region that is orthologous to another region." [SO:ke]	45766	\N	\N	sequence	0	SO	orthologous_region	orthologous_region
SO:0000853	SO:0000855	\N	"A region that is homologous to another region." [SO:ke]	SO:0000855	"A homologous_region that is orthologous to another region." [SO:ke]	490455	\N	\N	sequence	1	SO	homologous_region	orthologous_region
SO:0000330	SO:0000853	\N	"Region of sequence similarity by descent from a common ancestor." [SO:ke]	SO:0000855	"A homologous_region that is orthologous to another region." [SO:ke]	1072962	\N	SOFA	sequence	2	SO	conserved_region	orthologous_region
SO:0001410	SO:0000330	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000855	"A homologous_region that is orthologous to another region." [SO:ke]	1904013	SOFA	SOFA	sequence	3	SO	experimental_feature	orthologous_region
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000855	"A homologous_region that is orthologous to another region." [SO:ke]	2928463	SOFA	SOFA	sequence	4	SO	region	orthologous_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000855	"A homologous_region that is orthologous to another region." [SO:ke]	4001754	SOFA	SOFA	sequence	5	SO	sequence_feature	orthologous_region
SO:0000856	\N	\N	"" []	SO:0000856	"" []	45767	\N	\N	sequence	0	SO	conserved	conserved
SO:0000733	SO:0000856	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000856	"" []	490456	\N	\N	sequence	1	SO	feature_attribute	conserved
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000856	"" []	1072963	\N	\N	sequence	2	SO	sequence_attribute	conserved
SO:0000857	\N	\N	"Similarity due to common ancestry." [SO:ke]	SO:0000857	"Similarity due to common ancestry." [SO:ke]	45768	\N	\N	sequence	0	SO	homologous	homologous
SO:0000856	SO:0000857	\N	"" []	SO:0000857	"Similarity due to common ancestry." [SO:ke]	490457	\N	\N	sequence	1	SO	conserved	homologous
SO:0000733	SO:0000856	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000857	"Similarity due to common ancestry." [SO:ke]	1072964	\N	\N	sequence	2	SO	feature_attribute	homologous
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000857	"Similarity due to common ancestry." [SO:ke]	1904014	\N	\N	sequence	3	SO	sequence_attribute	homologous
SO:0000858	\N	\N	"An attribute describing a kind of homology where divergence occurred after a speciation event." [SO:ke]	SO:0000858	"An attribute describing a kind of homology where divergence occurred after a speciation event." [SO:ke]	45769	\N	\N	sequence	0	SO	orthologous	orthologous
SO:0000857	SO:0000858	\N	"Similarity due to common ancestry." [SO:ke]	SO:0000858	"An attribute describing a kind of homology where divergence occurred after a speciation event." [SO:ke]	490458	\N	\N	sequence	1	SO	homologous	orthologous
SO:0000856	SO:0000857	\N	"" []	SO:0000858	"An attribute describing a kind of homology where divergence occurred after a speciation event." [SO:ke]	1072965	\N	\N	sequence	2	SO	conserved	orthologous
SO:0000733	SO:0000856	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000858	"An attribute describing a kind of homology where divergence occurred after a speciation event." [SO:ke]	1904015	\N	\N	sequence	3	SO	feature_attribute	orthologous
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000858	"An attribute describing a kind of homology where divergence occurred after a speciation event." [SO:ke]	2928464	\N	\N	sequence	4	SO	sequence_attribute	orthologous
SO:0000859	\N	\N	"An attribute describing a kind of homology where divergence occurred after a duplication event." [SO:ke]	SO:0000859	"An attribute describing a kind of homology where divergence occurred after a duplication event." [SO:ke]	45770	\N	\N	sequence	0	SO	paralogous	paralogous
SO:0000857	SO:0000859	\N	"Similarity due to common ancestry." [SO:ke]	SO:0000859	"An attribute describing a kind of homology where divergence occurred after a duplication event." [SO:ke]	490459	\N	\N	sequence	1	SO	homologous	paralogous
SO:0000856	SO:0000857	\N	"" []	SO:0000859	"An attribute describing a kind of homology where divergence occurred after a duplication event." [SO:ke]	1072966	\N	\N	sequence	2	SO	conserved	paralogous
SO:0000733	SO:0000856	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000859	"An attribute describing a kind of homology where divergence occurred after a duplication event." [SO:ke]	1904016	\N	\N	sequence	3	SO	feature_attribute	paralogous
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000859	"An attribute describing a kind of homology where divergence occurred after a duplication event." [SO:ke]	2928465	\N	\N	sequence	4	SO	sequence_attribute	paralogous
SO:0000860	\N	\N	"Attribute describing sequence regions occurring in same order on chromosome of different species." [SO:ke]	SO:0000860	"Attribute describing sequence regions occurring in same order on chromosome of different species." [SO:ke]	45771	\N	\N	sequence	0	SO	syntenic	syntenic
SO:0000856	SO:0000860	\N	"" []	SO:0000860	"Attribute describing sequence regions occurring in same order on chromosome of different species." [SO:ke]	490460	\N	\N	sequence	1	SO	conserved	syntenic
SO:0000733	SO:0000856	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000860	"Attribute describing sequence regions occurring in same order on chromosome of different species." [SO:ke]	1072967	\N	\N	sequence	2	SO	feature_attribute	syntenic
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000860	"Attribute describing sequence regions occurring in same order on chromosome of different species." [SO:ke]	1904017	\N	\N	sequence	3	SO	sequence_attribute	syntenic
SO:0000861	\N	\N	"A primary transcript that is capped." [SO:xp]	SO:0000861	"A primary transcript that is capped." [SO:xp]	45772	\N	\N	sequence	0	SO	capped_primary_transcript	capped_primary_transcript
SO:0000185	SO:0000861	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000861	"A primary transcript that is capped." [SO:xp]	490461	\N	SOFA	sequence	1	SO	primary_transcript	capped_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000861	"A primary transcript that is capped." [SO:xp]	1072968	SOFA	SOFA	sequence	2	SO	transcript	capped_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000861	"A primary transcript that is capped." [SO:xp]	1904018	SOFA	SOFA	sequence	3	SO	gene_member_region	capped_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000861	"A primary transcript that is capped." [SO:xp]	2928466	SOFA	SOFA	sequence	4	SO	biological_region	capped_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000861	"A primary transcript that is capped." [SO:xp]	4001755	SOFA	SOFA	sequence	5	SO	region	capped_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000861	"A primary transcript that is capped." [SO:xp]	4966219	SOFA	SOFA	sequence	6	SO	sequence_feature	capped_primary_transcript
SO:0000862	\N	\N	"An mRNA that is capped." [SO:xp]	SO:0000862	"An mRNA that is capped." [SO:xp]	45773	\N	\N	sequence	0	SO	capped_mRNA	capped_mRNA
SO:0000234	SO:0000862	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000862	"An mRNA that is capped." [SO:xp]	490462	\N	SOFA	sequence	1	SO	mRNA	capped_mRNA
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000862	"An mRNA that is capped." [SO:xp]	1072969	SOFA	SOFA	sequence	2	SO	mature_transcript	capped_mRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000862	"An mRNA that is capped." [SO:xp]	1904019	SOFA	SOFA	sequence	3	SO	transcript	capped_mRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000862	"An mRNA that is capped." [SO:xp]	2928467	SOFA	SOFA	sequence	4	SO	gene_member_region	capped_mRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000862	"An mRNA that is capped." [SO:xp]	4001756	SOFA	SOFA	sequence	5	SO	biological_region	capped_mRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000862	"An mRNA that is capped." [SO:xp]	4966220	SOFA	SOFA	sequence	6	SO	region	capped_mRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000862	"An mRNA that is capped." [SO:xp]	5741075	SOFA	SOFA	sequence	7	SO	sequence_feature	capped_mRNA
SO:0000863	\N	\N	"An attribute describing an mRNA feature." [SO:ke]	SO:0000863	"An attribute describing an mRNA feature." [SO:ke]	45774	\N	\N	sequence	0	SO	mRNA_attribute	mRNA_attribute
SO:0000237	SO:0000863	\N	"" []	SO:0000863	"An attribute describing an mRNA feature." [SO:ke]	490463	\N	\N	sequence	1	SO	transcript_attribute	mRNA_attribute
SO:0000733	SO:0000237	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000863	"An attribute describing an mRNA feature." [SO:ke]	1072970	\N	\N	sequence	2	SO	feature_attribute	mRNA_attribute
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000863	"An attribute describing an mRNA feature." [SO:ke]	1904020	\N	\N	sequence	3	SO	sequence_attribute	mRNA_attribute
SO:0000864	\N	\N	"An attribute describing a sequence is representative of a class of similar sequences." [SO:ke]	SO:0000864	"An attribute describing a sequence is representative of a class of similar sequences." [SO:ke]	45775	\N	\N	sequence	0	SO	exemplar	exemplar
SO:0000863	SO:0000864	\N	"An attribute describing an mRNA feature." [SO:ke]	SO:0000864	"An attribute describing a sequence is representative of a class of similar sequences." [SO:ke]	490464	\N	\N	sequence	1	SO	mRNA_attribute	exemplar
SO:0000237	SO:0000863	\N	"" []	SO:0000864	"An attribute describing a sequence is representative of a class of similar sequences." [SO:ke]	1072971	\N	\N	sequence	2	SO	transcript_attribute	exemplar
SO:0000733	SO:0000237	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000864	"An attribute describing a sequence is representative of a class of similar sequences." [SO:ke]	1904021	\N	\N	sequence	3	SO	feature_attribute	exemplar
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000864	"An attribute describing a sequence is representative of a class of similar sequences." [SO:ke]	2928468	\N	\N	sequence	4	SO	sequence_attribute	exemplar
SO:0000865	\N	\N	"An attribute describing a sequence that contains a mutation involving the deletion or insertion of one or more bases, where this number is not divisible by 3." [SO:ke]	SO:0000865	"An attribute describing a sequence that contains a mutation involving the deletion or insertion of one or more bases, where this number is not divisible by 3." [SO:ke]	45776	\N	\N	sequence	0	SO	frameshift	frameshift
SO:0000863	SO:0000865	\N	"An attribute describing an mRNA feature." [SO:ke]	SO:0000865	"An attribute describing a sequence that contains a mutation involving the deletion or insertion of one or more bases, where this number is not divisible by 3." [SO:ke]	490465	\N	\N	sequence	1	SO	mRNA_attribute	frameshift
SO:0000237	SO:0000863	\N	"" []	SO:0000865	"An attribute describing a sequence that contains a mutation involving the deletion or insertion of one or more bases, where this number is not divisible by 3." [SO:ke]	1072972	\N	\N	sequence	2	SO	transcript_attribute	frameshift
SO:0000733	SO:0000237	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000865	"An attribute describing a sequence that contains a mutation involving the deletion or insertion of one or more bases, where this number is not divisible by 3." [SO:ke]	1904022	\N	\N	sequence	3	SO	feature_attribute	frameshift
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000865	"An attribute describing a sequence that contains a mutation involving the deletion or insertion of one or more bases, where this number is not divisible by 3." [SO:ke]	2928469	\N	\N	sequence	4	SO	sequence_attribute	frameshift
SO:0000866	\N	\N	"A frameshift caused by deleting one base." [SO:ke]	SO:0000866	"A frameshift caused by deleting one base." [SO:ke]	45777	\N	\N	sequence	0	SO	minus_1_frameshift	minus_1_frameshift
SO:0000865	SO:0000866	\N	"An attribute describing a sequence that contains a mutation involving the deletion or insertion of one or more bases, where this number is not divisible by 3." [SO:ke]	SO:0000866	"A frameshift caused by deleting one base." [SO:ke]	490466	\N	\N	sequence	1	SO	frameshift	minus_1_frameshift
SO:0000863	SO:0000865	\N	"An attribute describing an mRNA feature." [SO:ke]	SO:0000866	"A frameshift caused by deleting one base." [SO:ke]	1072973	\N	\N	sequence	2	SO	mRNA_attribute	minus_1_frameshift
SO:0000237	SO:0000863	\N	"" []	SO:0000866	"A frameshift caused by deleting one base." [SO:ke]	1904023	\N	\N	sequence	3	SO	transcript_attribute	minus_1_frameshift
SO:0000733	SO:0000237	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000866	"A frameshift caused by deleting one base." [SO:ke]	2928470	\N	\N	sequence	4	SO	feature_attribute	minus_1_frameshift
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000866	"A frameshift caused by deleting one base." [SO:ke]	4001757	\N	\N	sequence	5	SO	sequence_attribute	minus_1_frameshift
SO:0000867	\N	\N	"A frameshift caused by deleting two bases." [SO:ke]	SO:0000867	"A frameshift caused by deleting two bases." [SO:ke]	45778	\N	\N	sequence	0	SO	minus_2_frameshift	minus_2_frameshift
SO:0000865	SO:0000867	\N	"An attribute describing a sequence that contains a mutation involving the deletion or insertion of one or more bases, where this number is not divisible by 3." [SO:ke]	SO:0000867	"A frameshift caused by deleting two bases." [SO:ke]	490467	\N	\N	sequence	1	SO	frameshift	minus_2_frameshift
SO:0000863	SO:0000865	\N	"An attribute describing an mRNA feature." [SO:ke]	SO:0000867	"A frameshift caused by deleting two bases." [SO:ke]	1072974	\N	\N	sequence	2	SO	mRNA_attribute	minus_2_frameshift
SO:0000237	SO:0000863	\N	"" []	SO:0000867	"A frameshift caused by deleting two bases." [SO:ke]	1904024	\N	\N	sequence	3	SO	transcript_attribute	minus_2_frameshift
SO:0000733	SO:0000237	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000867	"A frameshift caused by deleting two bases." [SO:ke]	2928471	\N	\N	sequence	4	SO	feature_attribute	minus_2_frameshift
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000867	"A frameshift caused by deleting two bases." [SO:ke]	4001758	\N	\N	sequence	5	SO	sequence_attribute	minus_2_frameshift
SO:0000868	\N	\N	"A frameshift caused by inserting one base." [SO:ke]	SO:0000868	"A frameshift caused by inserting one base." [SO:ke]	45779	\N	\N	sequence	0	SO	plus_1_frameshift	plus_1_frameshift
SO:0000865	SO:0000868	\N	"An attribute describing a sequence that contains a mutation involving the deletion or insertion of one or more bases, where this number is not divisible by 3." [SO:ke]	SO:0000868	"A frameshift caused by inserting one base." [SO:ke]	490468	\N	\N	sequence	1	SO	frameshift	plus_1_frameshift
SO:0000863	SO:0000865	\N	"An attribute describing an mRNA feature." [SO:ke]	SO:0000868	"A frameshift caused by inserting one base." [SO:ke]	1072975	\N	\N	sequence	2	SO	mRNA_attribute	plus_1_frameshift
SO:0000237	SO:0000863	\N	"" []	SO:0000868	"A frameshift caused by inserting one base." [SO:ke]	1904025	\N	\N	sequence	3	SO	transcript_attribute	plus_1_frameshift
SO:0000733	SO:0000237	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000868	"A frameshift caused by inserting one base." [SO:ke]	2928472	\N	\N	sequence	4	SO	feature_attribute	plus_1_frameshift
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000868	"A frameshift caused by inserting one base." [SO:ke]	4001759	\N	\N	sequence	5	SO	sequence_attribute	plus_1_frameshift
SO:0000869	\N	\N	"A frameshift caused by inserting two bases." [SO:ke]	SO:0000869	"A frameshift caused by inserting two bases." [SO:ke]	45780	\N	\N	sequence	0	SO	plus_2_framshift	plus_2_framshift
SO:0000865	SO:0000869	\N	"An attribute describing a sequence that contains a mutation involving the deletion or insertion of one or more bases, where this number is not divisible by 3." [SO:ke]	SO:0000869	"A frameshift caused by inserting two bases." [SO:ke]	490469	\N	\N	sequence	1	SO	frameshift	plus_2_framshift
SO:0000863	SO:0000865	\N	"An attribute describing an mRNA feature." [SO:ke]	SO:0000869	"A frameshift caused by inserting two bases." [SO:ke]	1072976	\N	\N	sequence	2	SO	mRNA_attribute	plus_2_framshift
SO:0000237	SO:0000863	\N	"" []	SO:0000869	"A frameshift caused by inserting two bases." [SO:ke]	1904026	\N	\N	sequence	3	SO	transcript_attribute	plus_2_framshift
SO:0000733	SO:0000237	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000869	"A frameshift caused by inserting two bases." [SO:ke]	2928473	\N	\N	sequence	4	SO	feature_attribute	plus_2_framshift
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000869	"A frameshift caused by inserting two bases." [SO:ke]	4001760	\N	\N	sequence	5	SO	sequence_attribute	plus_2_framshift
SO:0000870	\N	\N	"An attribute describing transcript sequence that is created by splicing exons from diferent genes." [SO:ke]	SO:0000870	"An attribute describing transcript sequence that is created by splicing exons from diferent genes." [SO:ke]	45781	\N	\N	sequence	0	SO	trans_spliced	trans_spliced
SO:0000237	SO:0000870	\N	"" []	SO:0000870	"An attribute describing transcript sequence that is created by splicing exons from diferent genes." [SO:ke]	490470	\N	\N	sequence	1	SO	transcript_attribute	trans_spliced
SO:0000733	SO:0000237	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000870	"An attribute describing transcript sequence that is created by splicing exons from diferent genes." [SO:ke]	1072977	\N	\N	sequence	2	SO	feature_attribute	trans_spliced
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000870	"An attribute describing transcript sequence that is created by splicing exons from diferent genes." [SO:ke]	1904027	\N	\N	sequence	3	SO	sequence_attribute	trans_spliced
SO:0000871	\N	\N	"An mRNA that is polyadenylated." [SO:xp]	SO:0000871	"An mRNA that is polyadenylated." [SO:xp]	45782	\N	\N	sequence	0	SO	polyadenylated_mRNA	polyadenylated_mRNA
SO:0000234	SO:0000871	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000871	"An mRNA that is polyadenylated." [SO:xp]	490471	\N	SOFA	sequence	1	SO	mRNA	polyadenylated_mRNA
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000871	"An mRNA that is polyadenylated." [SO:xp]	1072978	SOFA	SOFA	sequence	2	SO	mature_transcript	polyadenylated_mRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000871	"An mRNA that is polyadenylated." [SO:xp]	1904028	SOFA	SOFA	sequence	3	SO	transcript	polyadenylated_mRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000871	"An mRNA that is polyadenylated." [SO:xp]	2928474	SOFA	SOFA	sequence	4	SO	gene_member_region	polyadenylated_mRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000871	"An mRNA that is polyadenylated." [SO:xp]	4001761	SOFA	SOFA	sequence	5	SO	biological_region	polyadenylated_mRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000871	"An mRNA that is polyadenylated." [SO:xp]	4966221	SOFA	SOFA	sequence	6	SO	region	polyadenylated_mRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000871	"An mRNA that is polyadenylated." [SO:xp]	5741076	SOFA	SOFA	sequence	7	SO	sequence_feature	polyadenylated_mRNA
SO:0000872	\N	\N	"An mRNA that is trans-spliced." [SO:xp]	SO:0000872	"An mRNA that is trans-spliced." [SO:xp]	45783	\N	\N	sequence	0	SO	trans_spliced_mRNA	trans_spliced_mRNA
SO:0000234	SO:0000872	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000872	"An mRNA that is trans-spliced." [SO:xp]	490472	\N	SOFA	sequence	1	SO	mRNA	trans_spliced_mRNA
SO:0000479	SO:0000872	\N	"A transcript that is trans-spliced." [SO:xp]	SO:0000872	"An mRNA that is trans-spliced." [SO:xp]	490473	\N	\N	sequence	1	SO	trans_spliced_transcript	trans_spliced_mRNA
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000872	"An mRNA that is trans-spliced." [SO:xp]	1072979	SOFA	SOFA	sequence	2	SO	mature_transcript	trans_spliced_mRNA
SO:0000673	SO:0000479	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000872	"An mRNA that is trans-spliced." [SO:xp]	1072980	\N	SOFA	sequence	2	SO	transcript	trans_spliced_mRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000872	"An mRNA that is trans-spliced." [SO:xp]	1904029	SOFA	SOFA	sequence	3	SO	transcript	trans_spliced_mRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000872	"An mRNA that is trans-spliced." [SO:xp]	2928475	SOFA	SOFA	sequence	4	SO	gene_member_region	trans_spliced_mRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000872	"An mRNA that is trans-spliced." [SO:xp]	3173905	SOFA	SOFA	sequence	5	SO	biological_region	trans_spliced_mRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000872	"An mRNA that is trans-spliced." [SO:xp]	4385757	SOFA	SOFA	sequence	6	SO	region	trans_spliced_mRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000872	"An mRNA that is trans-spliced." [SO:xp]	5407416	SOFA	SOFA	sequence	7	SO	sequence_feature	trans_spliced_mRNA
SO:0000873	\N	\N	"A transcript that is edited." [SO:ke]	SO:0000873	"A transcript that is edited." [SO:ke]	45784	\N	\N	sequence	0	SO	edited_transcript	edited_transcript
SO:0000673	SO:0000873	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000873	"A transcript that is edited." [SO:ke]	490474	\N	SOFA	sequence	1	SO	transcript	edited_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000873	"A transcript that is edited." [SO:ke]	1072981	SOFA	SOFA	sequence	2	SO	gene_member_region	edited_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000873	"A transcript that is edited." [SO:ke]	1904031	SOFA	SOFA	sequence	3	SO	biological_region	edited_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000873	"A transcript that is edited." [SO:ke]	2928477	SOFA	SOFA	sequence	4	SO	region	edited_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000873	"A transcript that is edited." [SO:ke]	4001763	SOFA	SOFA	sequence	5	SO	sequence_feature	edited_transcript
SO:0000874	\N	\N	"A transcript that has been edited by A to I substitution." [SO:ke]	SO:0000874	"A transcript that has been edited by A to I substitution." [SO:ke]	45785	\N	\N	sequence	0	SO	edited_transcript_by_A_to_I_substitution	edited_transcript_by_A_to_I_substitution
SO:0000873	SO:0000874	\N	"A transcript that is edited." [SO:ke]	SO:0000874	"A transcript that has been edited by A to I substitution." [SO:ke]	490475	\N	\N	sequence	1	SO	edited_transcript	edited_transcript_by_A_to_I_substitution
SO:0000673	SO:0000873	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000874	"A transcript that has been edited by A to I substitution." [SO:ke]	1072982	\N	SOFA	sequence	2	SO	transcript	edited_transcript_by_A_to_I_substitution
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000874	"A transcript that has been edited by A to I substitution." [SO:ke]	1904032	SOFA	SOFA	sequence	3	SO	gene_member_region	edited_transcript_by_A_to_I_substitution
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000874	"A transcript that has been edited by A to I substitution." [SO:ke]	2928478	SOFA	SOFA	sequence	4	SO	biological_region	edited_transcript_by_A_to_I_substitution
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000874	"A transcript that has been edited by A to I substitution." [SO:ke]	4001764	SOFA	SOFA	sequence	5	SO	region	edited_transcript_by_A_to_I_substitution
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000874	"A transcript that has been edited by A to I substitution." [SO:ke]	4966223	SOFA	SOFA	sequence	6	SO	sequence_feature	edited_transcript_by_A_to_I_substitution
SO:0000875	\N	\N	"An attribute describing a sequence that is bound by a protein." [SO:ke]	SO:0000875	"An attribute describing a sequence that is bound by a protein." [SO:ke]	45786	\N	\N	sequence	0	SO	bound_by_protein	bound_by_protein
SO:0000277	SO:0000875	\N	"An attribute describing a sequence that is bound by another molecule." [SO:ke]	SO:0000875	"An attribute describing a sequence that is bound by a protein." [SO:ke]	490476	\N	\N	sequence	1	SO	bound_by_factor	bound_by_protein
SO:0000733	SO:0000277	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000875	"An attribute describing a sequence that is bound by a protein." [SO:ke]	1072983	\N	\N	sequence	2	SO	feature_attribute	bound_by_protein
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000875	"An attribute describing a sequence that is bound by a protein." [SO:ke]	1904033	\N	\N	sequence	3	SO	sequence_attribute	bound_by_protein
SO:0000876	\N	\N	"An attribute describing a sequence that is bound by a nucleic acid." [SO:ke]	SO:0000876	"An attribute describing a sequence that is bound by a nucleic acid." [SO:ke]	45787	\N	\N	sequence	0	SO	bound_by_nucleic_acid	bound_by_nucleic_acid
SO:0000277	SO:0000876	\N	"An attribute describing a sequence that is bound by another molecule." [SO:ke]	SO:0000876	"An attribute describing a sequence that is bound by a nucleic acid." [SO:ke]	490477	\N	\N	sequence	1	SO	bound_by_factor	bound_by_nucleic_acid
SO:0000733	SO:0000277	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000876	"An attribute describing a sequence that is bound by a nucleic acid." [SO:ke]	1072984	\N	\N	sequence	2	SO	feature_attribute	bound_by_nucleic_acid
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000876	"An attribute describing a sequence that is bound by a nucleic acid." [SO:ke]	1904034	\N	\N	sequence	3	SO	sequence_attribute	bound_by_nucleic_acid
SO:0000877	\N	\N	"An attribute describing a situation where a gene may encode for more than 1 transcript." [SO:ke]	SO:0000877	"An attribute describing a situation where a gene may encode for more than 1 transcript." [SO:ke]	45788	\N	\N	sequence	0	SO	alternatively_spliced	alternatively_spliced
SO:0000237	SO:0000877	\N	"" []	SO:0000877	"An attribute describing a situation where a gene may encode for more than 1 transcript." [SO:ke]	490478	\N	\N	sequence	1	SO	transcript_attribute	alternatively_spliced
SO:0000733	SO:0000237	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000877	"An attribute describing a situation where a gene may encode for more than 1 transcript." [SO:ke]	1072985	\N	\N	sequence	2	SO	feature_attribute	alternatively_spliced
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000877	"An attribute describing a situation where a gene may encode for more than 1 transcript." [SO:ke]	1904035	\N	\N	sequence	3	SO	sequence_attribute	alternatively_spliced
SO:0000878	\N	\N	"An attribute describing a sequence that contains the code for one gene product." [SO:ke]	SO:0000878	"An attribute describing a sequence that contains the code for one gene product." [SO:ke]	45789	\N	\N	sequence	0	SO	monocistronic	monocistronic
SO:0000237	SO:0000878	\N	"" []	SO:0000878	"An attribute describing a sequence that contains the code for one gene product." [SO:ke]	490479	\N	\N	sequence	1	SO	transcript_attribute	monocistronic
SO:0000733	SO:0000237	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000878	"An attribute describing a sequence that contains the code for one gene product." [SO:ke]	1072986	\N	\N	sequence	2	SO	feature_attribute	monocistronic
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000878	"An attribute describing a sequence that contains the code for one gene product." [SO:ke]	1904036	\N	\N	sequence	3	SO	sequence_attribute	monocistronic
SO:0000879	\N	\N	"An attribute describing a sequence that contains the code for two gene products." [SO:ke]	SO:0000879	"An attribute describing a sequence that contains the code for two gene products." [SO:ke]	45790	\N	\N	sequence	0	SO	dicistronic	dicistronic
SO:0000880	SO:0000879	\N	"An attribute describing a sequence that contains the code for more than one gene product." [SO:ke]	SO:0000879	"An attribute describing a sequence that contains the code for two gene products." [SO:ke]	490480	\N	\N	sequence	1	SO	polycistronic	dicistronic
SO:0000237	SO:0000880	\N	"" []	SO:0000879	"An attribute describing a sequence that contains the code for two gene products." [SO:ke]	1072987	\N	\N	sequence	2	SO	transcript_attribute	dicistronic
SO:0000733	SO:0000237	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000879	"An attribute describing a sequence that contains the code for two gene products." [SO:ke]	1904037	\N	\N	sequence	3	SO	feature_attribute	dicistronic
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000879	"An attribute describing a sequence that contains the code for two gene products." [SO:ke]	2928479	\N	\N	sequence	4	SO	sequence_attribute	dicistronic
SO:0000880	\N	\N	"An attribute describing a sequence that contains the code for more than one gene product." [SO:ke]	SO:0000880	"An attribute describing a sequence that contains the code for more than one gene product." [SO:ke]	45791	\N	\N	sequence	0	SO	polycistronic	polycistronic
SO:0000237	SO:0000880	\N	"" []	SO:0000880	"An attribute describing a sequence that contains the code for more than one gene product." [SO:ke]	490481	\N	\N	sequence	1	SO	transcript_attribute	polycistronic
SO:0000733	SO:0000237	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000880	"An attribute describing a sequence that contains the code for more than one gene product." [SO:ke]	1072988	\N	\N	sequence	2	SO	feature_attribute	polycistronic
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000880	"An attribute describing a sequence that contains the code for more than one gene product." [SO:ke]	1904038	\N	\N	sequence	3	SO	sequence_attribute	polycistronic
SO:0000881	\N	\N	"An attribute describing an mRNA sequence that has been reprogrammed at translation, causing localized alterations." [SO:ke]	SO:0000881	"An attribute describing an mRNA sequence that has been reprogrammed at translation, causing localized alterations." [SO:ke]	45792	\N	\N	sequence	0	SO	recoded	recoded
SO:0000863	SO:0000881	\N	"An attribute describing an mRNA feature." [SO:ke]	SO:0000881	"An attribute describing an mRNA sequence that has been reprogrammed at translation, causing localized alterations." [SO:ke]	490482	\N	\N	sequence	1	SO	mRNA_attribute	recoded
SO:0000237	SO:0000863	\N	"" []	SO:0000881	"An attribute describing an mRNA sequence that has been reprogrammed at translation, causing localized alterations." [SO:ke]	1072989	\N	\N	sequence	2	SO	transcript_attribute	recoded
SO:0000733	SO:0000237	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000881	"An attribute describing an mRNA sequence that has been reprogrammed at translation, causing localized alterations." [SO:ke]	1904039	\N	\N	sequence	3	SO	feature_attribute	recoded
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000881	"An attribute describing an mRNA sequence that has been reprogrammed at translation, causing localized alterations." [SO:ke]	2928480	\N	\N	sequence	4	SO	sequence_attribute	recoded
SO:0000882	\N	\N	"An attribute describing the alteration of codon meaning." [SO:ke]	SO:0000882	"An attribute describing the alteration of codon meaning." [SO:ke]	45793	\N	\N	sequence	0	SO	codon_redefined	codon_redefined
SO:0000881	SO:0000882	\N	"An attribute describing an mRNA sequence that has been reprogrammed at translation, causing localized alterations." [SO:ke]	SO:0000882	"An attribute describing the alteration of codon meaning." [SO:ke]	490483	\N	\N	sequence	1	SO	recoded	codon_redefined
SO:0000863	SO:0000881	\N	"An attribute describing an mRNA feature." [SO:ke]	SO:0000882	"An attribute describing the alteration of codon meaning." [SO:ke]	1072990	\N	\N	sequence	2	SO	mRNA_attribute	codon_redefined
SO:0000237	SO:0000863	\N	"" []	SO:0000882	"An attribute describing the alteration of codon meaning." [SO:ke]	1904040	\N	\N	sequence	3	SO	transcript_attribute	codon_redefined
SO:0000733	SO:0000237	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000882	"An attribute describing the alteration of codon meaning." [SO:ke]	2928481	\N	\N	sequence	4	SO	feature_attribute	codon_redefined
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000882	"An attribute describing the alteration of codon meaning." [SO:ke]	4001765	\N	\N	sequence	5	SO	sequence_attribute	codon_redefined
SO:0000883	\N	\N	"A stop codon redefined to be a new amino acid." [SO:ke]	SO:0000883	"A stop codon redefined to be a new amino acid." [SO:ke]	45794	\N	\N	sequence	0	SO	stop_codon_read_through	stop_codon_read_through
SO:0000145	SO:0000883	\N	"A codon that has been redefined at translation. The redefinition may be as a result of translational bypass, translational frameshifting or stop codon readthrough." [SO:xp]	SO:0000883	"A stop codon redefined to be a new amino acid." [SO:ke]	490484	\N	\N	sequence	1	SO	recoded_codon	stop_codon_read_through
SO:0000360	SO:0000145	\N	"A set of (usually) three nucleotide bases in a DNA or RNA sequence, which together code for a unique amino acid or the termination of translation and are contained within the CDS." [SO:ke]	SO:0000883	"A stop codon redefined to be a new amino acid." [SO:ke]	1072991	\N	SOFA	sequence	2	SO	codon	stop_codon_read_through
SO:0000851	SO:0000360	\N	"A region of a CDS." [SO:cb]	SO:0000883	"A stop codon redefined to be a new amino acid." [SO:ke]	1904041	SOFA	SOFA	sequence	3	SO	CDS_region	stop_codon_read_through
SO:0000316	SO:0000851	\N	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	SO:0000883	"A stop codon redefined to be a new amino acid." [SO:ke]	2928482	SOFA	SOFA	sequence	4	SO	CDS	stop_codon_read_through
SO:0000836	SO:0000851	\N	"A region of an mRNA." [SO:cb]	SO:0000883	"A stop codon redefined to be a new amino acid." [SO:ke]	2928483	SOFA	SOFA	sequence	4	SO	mRNA_region	stop_codon_read_through
SO:0000836	SO:0000316	\N	"A region of an mRNA." [SO:cb]	SO:0000883	"A stop codon redefined to be a new amino acid." [SO:ke]	4001766	SOFA	SOFA	sequence	5	SO	mRNA_region	stop_codon_read_through
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000883	"A stop codon redefined to be a new amino acid." [SO:ke]	4966224	SOFA	SOFA	sequence	6	SO	mRNA	stop_codon_read_through
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:0000883	"A stop codon redefined to be a new amino acid." [SO:ke]	4966225	SOFA	SOFA	sequence	6	SO	mature_transcript_region	stop_codon_read_through
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000883	"A stop codon redefined to be a new amino acid." [SO:ke]	5407417	SOFA	SOFA	sequence	7	SO	mature_transcript	stop_codon_read_through
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0000883	"A stop codon redefined to be a new amino acid." [SO:ke]	5407418	SOFA	SOFA	sequence	7	SO	transcript_region	stop_codon_read_through
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000883	"A stop codon redefined to be a new amino acid." [SO:ke]	6146637	SOFA	SOFA	sequence	8	SO	transcript	stop_codon_read_through
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000883	"A stop codon redefined to be a new amino acid." [SO:ke]	6146638	SOFA	SOFA	sequence	8	SO	transcript	stop_codon_read_through
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000883	"A stop codon redefined to be a new amino acid." [SO:ke]	6146639	SOFA	SOFA	sequence	8	SO	biological_region	stop_codon_read_through
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000883	"A stop codon redefined to be a new amino acid." [SO:ke]	6631388	SOFA	SOFA	sequence	9	SO	gene_member_region	stop_codon_read_through
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000883	"A stop codon redefined to be a new amino acid." [SO:ke]	7098882	SOFA	SOFA	sequence	11	SO	region	stop_codon_read_through
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000883	"A stop codon redefined to be a new amino acid." [SO:ke]	6925087	SOFA	SOFA	sequence	10	SO	biological_region	stop_codon_read_through
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000883	"A stop codon redefined to be a new amino acid." [SO:ke]	7197150	SOFA	SOFA	sequence	12	SO	sequence_feature	stop_codon_read_through
SO:0000884	\N	\N	"A stop codon redefined to be the new amino acid, pyrrolysine." [SO:ke]	SO:0000884	"A stop codon redefined to be the new amino acid, pyrrolysine." [SO:ke]	45795	\N	\N	sequence	0	SO	stop_codon_redefined_as_pyrrolysine	stop_codon_redefined_as_pyrrolysine
SO:0000883	SO:0000884	\N	"A stop codon redefined to be a new amino acid." [SO:ke]	SO:0000884	"A stop codon redefined to be the new amino acid, pyrrolysine." [SO:ke]	490485	\N	\N	sequence	1	SO	stop_codon_read_through	stop_codon_redefined_as_pyrrolysine
SO:0000145	SO:0000883	\N	"A codon that has been redefined at translation. The redefinition may be as a result of translational bypass, translational frameshifting or stop codon readthrough." [SO:xp]	SO:0000884	"A stop codon redefined to be the new amino acid, pyrrolysine." [SO:ke]	1072992	\N	\N	sequence	2	SO	recoded_codon	stop_codon_redefined_as_pyrrolysine
SO:0000360	SO:0000145	\N	"A set of (usually) three nucleotide bases in a DNA or RNA sequence, which together code for a unique amino acid or the termination of translation and are contained within the CDS." [SO:ke]	SO:0000884	"A stop codon redefined to be the new amino acid, pyrrolysine." [SO:ke]	1904042	\N	SOFA	sequence	3	SO	codon	stop_codon_redefined_as_pyrrolysine
SO:0000851	SO:0000360	\N	"A region of a CDS." [SO:cb]	SO:0000884	"A stop codon redefined to be the new amino acid, pyrrolysine." [SO:ke]	2928484	SOFA	SOFA	sequence	4	SO	CDS_region	stop_codon_redefined_as_pyrrolysine
SO:0000316	SO:0000851	\N	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	SO:0000884	"A stop codon redefined to be the new amino acid, pyrrolysine." [SO:ke]	4001769	SOFA	SOFA	sequence	5	SO	CDS	stop_codon_redefined_as_pyrrolysine
SO:0000836	SO:0000851	\N	"A region of an mRNA." [SO:cb]	SO:0000884	"A stop codon redefined to be the new amino acid, pyrrolysine." [SO:ke]	4001770	SOFA	SOFA	sequence	5	SO	mRNA_region	stop_codon_redefined_as_pyrrolysine
SO:0000836	SO:0000316	\N	"A region of an mRNA." [SO:cb]	SO:0000884	"A stop codon redefined to be the new amino acid, pyrrolysine." [SO:ke]	4966228	SOFA	SOFA	sequence	6	SO	mRNA_region	stop_codon_redefined_as_pyrrolysine
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000884	"A stop codon redefined to be the new amino acid, pyrrolysine." [SO:ke]	5741080	SOFA	SOFA	sequence	7	SO	mRNA	stop_codon_redefined_as_pyrrolysine
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:0000884	"A stop codon redefined to be the new amino acid, pyrrolysine." [SO:ke]	5741081	SOFA	SOFA	sequence	7	SO	mature_transcript_region	stop_codon_redefined_as_pyrrolysine
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000884	"A stop codon redefined to be the new amino acid, pyrrolysine." [SO:ke]	6146640	SOFA	SOFA	sequence	8	SO	mature_transcript	stop_codon_redefined_as_pyrrolysine
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0000884	"A stop codon redefined to be the new amino acid, pyrrolysine." [SO:ke]	6146641	SOFA	SOFA	sequence	8	SO	transcript_region	stop_codon_redefined_as_pyrrolysine
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000884	"A stop codon redefined to be the new amino acid, pyrrolysine." [SO:ke]	6631390	SOFA	SOFA	sequence	9	SO	transcript	stop_codon_redefined_as_pyrrolysine
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000884	"A stop codon redefined to be the new amino acid, pyrrolysine." [SO:ke]	6631391	SOFA	SOFA	sequence	9	SO	transcript	stop_codon_redefined_as_pyrrolysine
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000884	"A stop codon redefined to be the new amino acid, pyrrolysine." [SO:ke]	6631392	SOFA	SOFA	sequence	9	SO	biological_region	stop_codon_redefined_as_pyrrolysine
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000884	"A stop codon redefined to be the new amino acid, pyrrolysine." [SO:ke]	6925089	SOFA	SOFA	sequence	10	SO	gene_member_region	stop_codon_redefined_as_pyrrolysine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000884	"A stop codon redefined to be the new amino acid, pyrrolysine." [SO:ke]	7208243	SOFA	SOFA	sequence	12	SO	region	stop_codon_redefined_as_pyrrolysine
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000884	"A stop codon redefined to be the new amino acid, pyrrolysine." [SO:ke]	7098883	SOFA	SOFA	sequence	11	SO	biological_region	stop_codon_redefined_as_pyrrolysine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000884	"A stop codon redefined to be the new amino acid, pyrrolysine." [SO:ke]	7284159	SOFA	SOFA	sequence	13	SO	sequence_feature	stop_codon_redefined_as_pyrrolysine
SO:0000885	\N	\N	"A stop codon redefined to be the new amino acid, selenocysteine." [SO:ke]	SO:0000885	"A stop codon redefined to be the new amino acid, selenocysteine." [SO:ke]	45796	\N	\N	sequence	0	SO	stop_codon_redefined_as_selenocysteine	stop_codon_redefined_as_selenocysteine
SO:0000883	SO:0000885	\N	"A stop codon redefined to be a new amino acid." [SO:ke]	SO:0000885	"A stop codon redefined to be the new amino acid, selenocysteine." [SO:ke]	490486	\N	\N	sequence	1	SO	stop_codon_read_through	stop_codon_redefined_as_selenocysteine
SO:0000145	SO:0000883	\N	"A codon that has been redefined at translation. The redefinition may be as a result of translational bypass, translational frameshifting or stop codon readthrough." [SO:xp]	SO:0000885	"A stop codon redefined to be the new amino acid, selenocysteine." [SO:ke]	1072993	\N	\N	sequence	2	SO	recoded_codon	stop_codon_redefined_as_selenocysteine
SO:0000360	SO:0000145	\N	"A set of (usually) three nucleotide bases in a DNA or RNA sequence, which together code for a unique amino acid or the termination of translation and are contained within the CDS." [SO:ke]	SO:0000885	"A stop codon redefined to be the new amino acid, selenocysteine." [SO:ke]	1904043	\N	SOFA	sequence	3	SO	codon	stop_codon_redefined_as_selenocysteine
SO:0000851	SO:0000360	\N	"A region of a CDS." [SO:cb]	SO:0000885	"A stop codon redefined to be the new amino acid, selenocysteine." [SO:ke]	2928485	SOFA	SOFA	sequence	4	SO	CDS_region	stop_codon_redefined_as_selenocysteine
SO:0000316	SO:0000851	\N	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	SO:0000885	"A stop codon redefined to be the new amino acid, selenocysteine." [SO:ke]	4001771	SOFA	SOFA	sequence	5	SO	CDS	stop_codon_redefined_as_selenocysteine
SO:0000836	SO:0000851	\N	"A region of an mRNA." [SO:cb]	SO:0000885	"A stop codon redefined to be the new amino acid, selenocysteine." [SO:ke]	4001772	SOFA	SOFA	sequence	5	SO	mRNA_region	stop_codon_redefined_as_selenocysteine
SO:0000836	SO:0000316	\N	"A region of an mRNA." [SO:cb]	SO:0000885	"A stop codon redefined to be the new amino acid, selenocysteine." [SO:ke]	4966231	SOFA	SOFA	sequence	6	SO	mRNA_region	stop_codon_redefined_as_selenocysteine
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000885	"A stop codon redefined to be the new amino acid, selenocysteine." [SO:ke]	5741084	SOFA	SOFA	sequence	7	SO	mRNA	stop_codon_redefined_as_selenocysteine
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:0000885	"A stop codon redefined to be the new amino acid, selenocysteine." [SO:ke]	5741085	SOFA	SOFA	sequence	7	SO	mature_transcript_region	stop_codon_redefined_as_selenocysteine
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000885	"A stop codon redefined to be the new amino acid, selenocysteine." [SO:ke]	6146642	SOFA	SOFA	sequence	8	SO	mature_transcript	stop_codon_redefined_as_selenocysteine
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0000885	"A stop codon redefined to be the new amino acid, selenocysteine." [SO:ke]	6146643	SOFA	SOFA	sequence	8	SO	transcript_region	stop_codon_redefined_as_selenocysteine
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000885	"A stop codon redefined to be the new amino acid, selenocysteine." [SO:ke]	6631393	SOFA	SOFA	sequence	9	SO	transcript	stop_codon_redefined_as_selenocysteine
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000885	"A stop codon redefined to be the new amino acid, selenocysteine." [SO:ke]	6631394	SOFA	SOFA	sequence	9	SO	transcript	stop_codon_redefined_as_selenocysteine
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000885	"A stop codon redefined to be the new amino acid, selenocysteine." [SO:ke]	6631395	SOFA	SOFA	sequence	9	SO	biological_region	stop_codon_redefined_as_selenocysteine
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000885	"A stop codon redefined to be the new amino acid, selenocysteine." [SO:ke]	6925091	SOFA	SOFA	sequence	10	SO	gene_member_region	stop_codon_redefined_as_selenocysteine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000885	"A stop codon redefined to be the new amino acid, selenocysteine." [SO:ke]	7208244	SOFA	SOFA	sequence	12	SO	region	stop_codon_redefined_as_selenocysteine
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000885	"A stop codon redefined to be the new amino acid, selenocysteine." [SO:ke]	7098885	SOFA	SOFA	sequence	11	SO	biological_region	stop_codon_redefined_as_selenocysteine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000885	"A stop codon redefined to be the new amino acid, selenocysteine." [SO:ke]	7284160	SOFA	SOFA	sequence	13	SO	sequence_feature	stop_codon_redefined_as_selenocysteine
SO:0000886	\N	\N	"Recoded mRNA where a block of nucleotides is not translated." [SO:ke]	SO:0000886	"Recoded mRNA where a block of nucleotides is not translated." [SO:ke]	45797	\N	\N	sequence	0	SO	recoded_by_translational_bypass	recoded_by_translational_bypass
SO:0000881	SO:0000886	\N	"An attribute describing an mRNA sequence that has been reprogrammed at translation, causing localized alterations." [SO:ke]	SO:0000886	"Recoded mRNA where a block of nucleotides is not translated." [SO:ke]	490487	\N	\N	sequence	1	SO	recoded	recoded_by_translational_bypass
SO:0000863	SO:0000881	\N	"An attribute describing an mRNA feature." [SO:ke]	SO:0000886	"Recoded mRNA where a block of nucleotides is not translated." [SO:ke]	1072994	\N	\N	sequence	2	SO	mRNA_attribute	recoded_by_translational_bypass
SO:0000237	SO:0000863	\N	"" []	SO:0000886	"Recoded mRNA where a block of nucleotides is not translated." [SO:ke]	1904044	\N	\N	sequence	3	SO	transcript_attribute	recoded_by_translational_bypass
SO:0000733	SO:0000237	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000886	"Recoded mRNA where a block of nucleotides is not translated." [SO:ke]	2928486	\N	\N	sequence	4	SO	feature_attribute	recoded_by_translational_bypass
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000886	"Recoded mRNA where a block of nucleotides is not translated." [SO:ke]	4001773	\N	\N	sequence	5	SO	sequence_attribute	recoded_by_translational_bypass
SO:0000887	\N	\N	"Recoding by frameshifting a particular site." [SO:ke]	SO:0000887	"Recoding by frameshifting a particular site." [SO:ke]	45798	\N	\N	sequence	0	SO	translationally_frameshifted	translationally_frameshifted
SO:0000881	SO:0000887	\N	"An attribute describing an mRNA sequence that has been reprogrammed at translation, causing localized alterations." [SO:ke]	SO:0000887	"Recoding by frameshifting a particular site." [SO:ke]	490488	\N	\N	sequence	1	SO	recoded	translationally_frameshifted
SO:0000863	SO:0000881	\N	"An attribute describing an mRNA feature." [SO:ke]	SO:0000887	"Recoding by frameshifting a particular site." [SO:ke]	1072995	\N	\N	sequence	2	SO	mRNA_attribute	translationally_frameshifted
SO:0000237	SO:0000863	\N	"" []	SO:0000887	"Recoding by frameshifting a particular site." [SO:ke]	1904045	\N	\N	sequence	3	SO	transcript_attribute	translationally_frameshifted
SO:0000733	SO:0000237	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000887	"Recoding by frameshifting a particular site." [SO:ke]	2928487	\N	\N	sequence	4	SO	feature_attribute	translationally_frameshifted
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000887	"Recoding by frameshifting a particular site." [SO:ke]	4001774	\N	\N	sequence	5	SO	sequence_attribute	translationally_frameshifted
SO:0000888	\N	\N	"A gene that is maternally_imprinted." [SO:xp]	SO:0000888	"A gene that is maternally_imprinted." [SO:xp]	45799	\N	\N	sequence	0	SO	maternally_imprinted_gene	maternally_imprinted_gene
SO:0000898	SO:0000888	\N	"A gene that is epigenetically modified." [SO:ke]	SO:0000888	"A gene that is maternally_imprinted." [SO:xp]	490489	\N	\N	sequence	1	SO	epigenetically_modified_gene	maternally_imprinted_gene
SO:0000704	SO:0000898	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000888	"A gene that is maternally_imprinted." [SO:xp]	1072996	\N	SOFA	sequence	2	SO	gene	maternally_imprinted_gene
SO:0001720	SO:0000898	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0000888	"A gene that is maternally_imprinted." [SO:xp]	1072997	\N	SOFA	sequence	2	SO	epigenetically_modified_region	maternally_imprinted_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000888	"A gene that is maternally_imprinted." [SO:xp]	1904046	SOFA	SOFA	sequence	3	SO	biological_region	maternally_imprinted_gene
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000888	"A gene that is maternally_imprinted." [SO:xp]	1904047	SOFA	SOFA	sequence	3	SO	biological_region	maternally_imprinted_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000888	"A gene that is maternally_imprinted." [SO:xp]	2928488	SOFA	SOFA	sequence	4	SO	region	maternally_imprinted_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000888	"A gene that is maternally_imprinted." [SO:xp]	4001775	SOFA	SOFA	sequence	5	SO	sequence_feature	maternally_imprinted_gene
SO:0000889	\N	\N	"A gene that is paternally imprinted." [SO:xp]	SO:0000889	"A gene that is paternally imprinted." [SO:xp]	45800	\N	\N	sequence	0	SO	paternally_imprinted_gene	paternally_imprinted_gene
SO:0000898	SO:0000889	\N	"A gene that is epigenetically modified." [SO:ke]	SO:0000889	"A gene that is paternally imprinted." [SO:xp]	490490	\N	\N	sequence	1	SO	epigenetically_modified_gene	paternally_imprinted_gene
SO:0000704	SO:0000898	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000889	"A gene that is paternally imprinted." [SO:xp]	1072998	\N	SOFA	sequence	2	SO	gene	paternally_imprinted_gene
SO:0001720	SO:0000898	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0000889	"A gene that is paternally imprinted." [SO:xp]	1072999	\N	SOFA	sequence	2	SO	epigenetically_modified_region	paternally_imprinted_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000889	"A gene that is paternally imprinted." [SO:xp]	1904048	SOFA	SOFA	sequence	3	SO	biological_region	paternally_imprinted_gene
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000889	"A gene that is paternally imprinted." [SO:xp]	1904049	SOFA	SOFA	sequence	3	SO	biological_region	paternally_imprinted_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000889	"A gene that is paternally imprinted." [SO:xp]	2928489	SOFA	SOFA	sequence	4	SO	region	paternally_imprinted_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000889	"A gene that is paternally imprinted." [SO:xp]	4001776	SOFA	SOFA	sequence	5	SO	sequence_feature	paternally_imprinted_gene
SO:0000890	\N	\N	"A gene that is post translationally regulated." [SO:xp]	SO:0000890	"A gene that is post translationally regulated." [SO:xp]	45801	\N	\N	sequence	0	SO	post_translationally_regulated_gene	post_translationally_regulated_gene
SO:0000704	SO:0000890	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000890	"A gene that is post translationally regulated." [SO:xp]	490491	\N	SOFA	sequence	1	SO	gene	post_translationally_regulated_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000890	"A gene that is post translationally regulated." [SO:xp]	1073000	SOFA	SOFA	sequence	2	SO	biological_region	post_translationally_regulated_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000890	"A gene that is post translationally regulated." [SO:xp]	1904050	SOFA	SOFA	sequence	3	SO	region	post_translationally_regulated_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000890	"A gene that is post translationally regulated." [SO:xp]	2928490	SOFA	SOFA	sequence	4	SO	sequence_feature	post_translationally_regulated_gene
SO:0000891	\N	\N	"A gene that is negatively autoreguated." [SO:xp]	SO:0000891	"A gene that is negatively autoreguated." [SO:xp]	45802	\N	\N	sequence	0	SO	negatively_autoregulated_gene	negatively_autoregulated_gene
SO:0000704	SO:0000891	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000891	"A gene that is negatively autoreguated." [SO:xp]	490492	\N	SOFA	sequence	1	SO	gene	negatively_autoregulated_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000891	"A gene that is negatively autoreguated." [SO:xp]	1073001	SOFA	SOFA	sequence	2	SO	biological_region	negatively_autoregulated_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000891	"A gene that is negatively autoreguated." [SO:xp]	1904051	SOFA	SOFA	sequence	3	SO	region	negatively_autoregulated_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000891	"A gene that is negatively autoreguated." [SO:xp]	2928491	SOFA	SOFA	sequence	4	SO	sequence_feature	negatively_autoregulated_gene
SO:0000892	\N	\N	"A gene that is positively autoregulated." [SO:xp]	SO:0000892	"A gene that is positively autoregulated." [SO:xp]	45803	\N	\N	sequence	0	SO	positively_autoregulated_gene	positively_autoregulated_gene
SO:0000704	SO:0000892	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000892	"A gene that is positively autoregulated." [SO:xp]	490493	\N	SOFA	sequence	1	SO	gene	positively_autoregulated_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000892	"A gene that is positively autoregulated." [SO:xp]	1073002	SOFA	SOFA	sequence	2	SO	biological_region	positively_autoregulated_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000892	"A gene that is positively autoregulated." [SO:xp]	1904052	SOFA	SOFA	sequence	3	SO	region	positively_autoregulated_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000892	"A gene that is positively autoregulated." [SO:xp]	2928492	SOFA	SOFA	sequence	4	SO	sequence_feature	positively_autoregulated_gene
SO:0000893	\N	\N	"An attribute describing an epigenetic process where a gene is inactivated at transcriptional or translational level." [SO:ke]	SO:0000893	"An attribute describing an epigenetic process where a gene is inactivated at transcriptional or translational level." [SO:ke]	45804	\N	\N	sequence	0	SO	silenced	silenced
SO:0000126	SO:0000893	\N	"A repressor molecule is required for transcription to stop." [SO:ke]	SO:0000893	"An attribute describing an epigenetic process where a gene is inactivated at transcriptional or translational level." [SO:ke]	490494	\N	\N	sequence	1	SO	transcriptionally_repressed	silenced
SO:0000123	SO:0000126	\N	"An attribute describing a gene that is regulated at transcription." [SO:ma]	SO:0000893	"An attribute describing an epigenetic process where a gene is inactivated at transcriptional or translational level." [SO:ke]	1073003	\N	\N	sequence	2	SO	transcriptionally_regulated	silenced
SO:0000119	SO:0000123	\N	"An attribute to describe a sequence that is regulated." [SO:ke]	SO:0000893	"An attribute describing an epigenetic process where a gene is inactivated at transcriptional or translational level." [SO:ke]	1904053	\N	\N	sequence	3	SO	regulated	silenced
SO:0000401	SO:0000119	\N	"" []	SO:0000893	"An attribute describing an epigenetic process where a gene is inactivated at transcriptional or translational level." [SO:ke]	2928493	\N	\N	sequence	4	SO	gene_attribute	silenced
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000893	"An attribute describing an epigenetic process where a gene is inactivated at transcriptional or translational level." [SO:ke]	4001777	\N	\N	sequence	5	SO	feature_attribute	silenced
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000893	"An attribute describing an epigenetic process where a gene is inactivated at transcriptional or translational level." [SO:ke]	4966234	\N	\N	sequence	6	SO	sequence_attribute	silenced
SO:0000894	\N	\N	"An attribute describing an epigenetic process where a gene is inactivated by DNA modifications, resulting in repression of transcription." [SO:ke]	SO:0000894	"An attribute describing an epigenetic process where a gene is inactivated by DNA modifications, resulting in repression of transcription." [SO:ke]	45805	\N	\N	sequence	0	SO	silenced_by_DNA_modification	silenced_by_DNA_modification
SO:0000893	SO:0000894	\N	"An attribute describing an epigenetic process where a gene is inactivated at transcriptional or translational level." [SO:ke]	SO:0000894	"An attribute describing an epigenetic process where a gene is inactivated by DNA modifications, resulting in repression of transcription." [SO:ke]	490495	\N	\N	sequence	1	SO	silenced	silenced_by_DNA_modification
SO:0000126	SO:0000893	\N	"A repressor molecule is required for transcription to stop." [SO:ke]	SO:0000894	"An attribute describing an epigenetic process where a gene is inactivated by DNA modifications, resulting in repression of transcription." [SO:ke]	1073004	\N	\N	sequence	2	SO	transcriptionally_repressed	silenced_by_DNA_modification
SO:0000123	SO:0000126	\N	"An attribute describing a gene that is regulated at transcription." [SO:ma]	SO:0000894	"An attribute describing an epigenetic process where a gene is inactivated by DNA modifications, resulting in repression of transcription." [SO:ke]	1904054	\N	\N	sequence	3	SO	transcriptionally_regulated	silenced_by_DNA_modification
SO:0000119	SO:0000123	\N	"An attribute to describe a sequence that is regulated." [SO:ke]	SO:0000894	"An attribute describing an epigenetic process where a gene is inactivated by DNA modifications, resulting in repression of transcription." [SO:ke]	2928494	\N	\N	sequence	4	SO	regulated	silenced_by_DNA_modification
SO:0000401	SO:0000119	\N	"" []	SO:0000894	"An attribute describing an epigenetic process where a gene is inactivated by DNA modifications, resulting in repression of transcription." [SO:ke]	4001778	\N	\N	sequence	5	SO	gene_attribute	silenced_by_DNA_modification
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000894	"An attribute describing an epigenetic process where a gene is inactivated by DNA modifications, resulting in repression of transcription." [SO:ke]	4966235	\N	\N	sequence	6	SO	feature_attribute	silenced_by_DNA_modification
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000894	"An attribute describing an epigenetic process where a gene is inactivated by DNA modifications, resulting in repression of transcription." [SO:ke]	5741088	\N	\N	sequence	7	SO	sequence_attribute	silenced_by_DNA_modification
SO:0000895	\N	\N	"An attribute describing an epigenetic process where a gene is inactivated by DNA methylation, resulting in repression of transcription." [SO:ke]	SO:0000895	"An attribute describing an epigenetic process where a gene is inactivated by DNA methylation, resulting in repression of transcription." [SO:ke]	45806	\N	\N	sequence	0	SO	silenced_by_DNA_methylation	silenced_by_DNA_methylation
SO:0000894	SO:0000895	\N	"An attribute describing an epigenetic process where a gene is inactivated by DNA modifications, resulting in repression of transcription." [SO:ke]	SO:0000895	"An attribute describing an epigenetic process where a gene is inactivated by DNA methylation, resulting in repression of transcription." [SO:ke]	490496	\N	\N	sequence	1	SO	silenced_by_DNA_modification	silenced_by_DNA_methylation
SO:0000893	SO:0000894	\N	"An attribute describing an epigenetic process where a gene is inactivated at transcriptional or translational level." [SO:ke]	SO:0000895	"An attribute describing an epigenetic process where a gene is inactivated by DNA methylation, resulting in repression of transcription." [SO:ke]	1073005	\N	\N	sequence	2	SO	silenced	silenced_by_DNA_methylation
SO:0000126	SO:0000893	\N	"A repressor molecule is required for transcription to stop." [SO:ke]	SO:0000895	"An attribute describing an epigenetic process where a gene is inactivated by DNA methylation, resulting in repression of transcription." [SO:ke]	1904055	\N	\N	sequence	3	SO	transcriptionally_repressed	silenced_by_DNA_methylation
SO:0000123	SO:0000126	\N	"An attribute describing a gene that is regulated at transcription." [SO:ma]	SO:0000895	"An attribute describing an epigenetic process where a gene is inactivated by DNA methylation, resulting in repression of transcription." [SO:ke]	2928495	\N	\N	sequence	4	SO	transcriptionally_regulated	silenced_by_DNA_methylation
SO:0000119	SO:0000123	\N	"An attribute to describe a sequence that is regulated." [SO:ke]	SO:0000895	"An attribute describing an epigenetic process where a gene is inactivated by DNA methylation, resulting in repression of transcription." [SO:ke]	4001779	\N	\N	sequence	5	SO	regulated	silenced_by_DNA_methylation
SO:0000401	SO:0000119	\N	"" []	SO:0000895	"An attribute describing an epigenetic process where a gene is inactivated by DNA methylation, resulting in repression of transcription." [SO:ke]	4966236	\N	\N	sequence	6	SO	gene_attribute	silenced_by_DNA_methylation
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000895	"An attribute describing an epigenetic process where a gene is inactivated by DNA methylation, resulting in repression of transcription." [SO:ke]	5741089	\N	\N	sequence	7	SO	feature_attribute	silenced_by_DNA_methylation
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000895	"An attribute describing an epigenetic process where a gene is inactivated by DNA methylation, resulting in repression of transcription." [SO:ke]	6310988	\N	\N	sequence	8	SO	sequence_attribute	silenced_by_DNA_methylation
SO:0000896	\N	\N	"A gene that is translationally regulated." [SO:xp]	SO:0000896	"A gene that is translationally regulated." [SO:xp]	45807	\N	\N	sequence	0	SO	translationally_regulated_gene	translationally_regulated_gene
SO:0000704	SO:0000896	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000896	"A gene that is translationally regulated." [SO:xp]	490497	\N	SOFA	sequence	1	SO	gene	translationally_regulated_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000896	"A gene that is translationally regulated." [SO:xp]	1073006	SOFA	SOFA	sequence	2	SO	biological_region	translationally_regulated_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000896	"A gene that is translationally regulated." [SO:xp]	1904056	SOFA	SOFA	sequence	3	SO	region	translationally_regulated_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000896	"A gene that is translationally regulated." [SO:xp]	2928496	SOFA	SOFA	sequence	4	SO	sequence_feature	translationally_regulated_gene
SO:0000897	\N	\N	"A gene that is allelically_excluded." [SO:xp]	SO:0000897	"A gene that is allelically_excluded." [SO:xp]	45808	\N	\N	sequence	0	SO	allelically_excluded_gene	allelically_excluded_gene
SO:0000898	SO:0000897	\N	"A gene that is epigenetically modified." [SO:ke]	SO:0000897	"A gene that is allelically_excluded." [SO:xp]	490498	\N	\N	sequence	1	SO	epigenetically_modified_gene	allelically_excluded_gene
SO:0000704	SO:0000898	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000897	"A gene that is allelically_excluded." [SO:xp]	1073007	\N	SOFA	sequence	2	SO	gene	allelically_excluded_gene
SO:0001720	SO:0000898	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0000897	"A gene that is allelically_excluded." [SO:xp]	1073008	\N	SOFA	sequence	2	SO	epigenetically_modified_region	allelically_excluded_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000897	"A gene that is allelically_excluded." [SO:xp]	1904057	SOFA	SOFA	sequence	3	SO	biological_region	allelically_excluded_gene
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000897	"A gene that is allelically_excluded." [SO:xp]	1904058	SOFA	SOFA	sequence	3	SO	biological_region	allelically_excluded_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000897	"A gene that is allelically_excluded." [SO:xp]	2928497	SOFA	SOFA	sequence	4	SO	region	allelically_excluded_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000897	"A gene that is allelically_excluded." [SO:xp]	4001780	SOFA	SOFA	sequence	5	SO	sequence_feature	allelically_excluded_gene
SO:0000898	\N	\N	"A gene that is epigenetically modified." [SO:ke]	SO:0000898	"A gene that is epigenetically modified." [SO:ke]	45809	\N	\N	sequence	0	SO	epigenetically_modified_gene	epigenetically_modified_gene
SO:0000704	SO:0000898	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000898	"A gene that is epigenetically modified." [SO:ke]	490499	\N	SOFA	sequence	1	SO	gene	epigenetically_modified_gene
SO:0001720	SO:0000898	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0000898	"A gene that is epigenetically modified." [SO:ke]	490500	\N	SOFA	sequence	1	SO	epigenetically_modified_region	epigenetically_modified_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000898	"A gene that is epigenetically modified." [SO:ke]	1073009	SOFA	SOFA	sequence	2	SO	biological_region	epigenetically_modified_gene
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000898	"A gene that is epigenetically modified." [SO:ke]	1073010	SOFA	SOFA	sequence	2	SO	biological_region	epigenetically_modified_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000898	"A gene that is epigenetically modified." [SO:ke]	1904059	SOFA	SOFA	sequence	3	SO	region	epigenetically_modified_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000898	"A gene that is epigenetically modified." [SO:ke]	2928498	SOFA	SOFA	sequence	4	SO	sequence_feature	epigenetically_modified_gene
SO:0000902	\N	\N	"A transgene is a gene that has been transferred naturally or by any of a number of genetic engineering techniques from one organism to another." [SO:xp]	SO:0000902	"A transgene is a gene that has been transferred naturally or by any of a number of genetic engineering techniques from one organism to another." [SO:xp]	45810	\N	\N	sequence	0	SO	transgene	transgene
SO:0000704	SO:0000902	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000902	"A transgene is a gene that has been transferred naturally or by any of a number of genetic engineering techniques from one organism to another." [SO:xp]	490501	\N	SOFA	sequence	1	SO	gene	transgene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000902	"A transgene is a gene that has been transferred naturally or by any of a number of genetic engineering techniques from one organism to another." [SO:xp]	1073011	SOFA	SOFA	sequence	2	SO	biological_region	transgene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000902	"A transgene is a gene that has been transferred naturally or by any of a number of genetic engineering techniques from one organism to another." [SO:xp]	1904060	SOFA	SOFA	sequence	3	SO	region	transgene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000902	"A transgene is a gene that has been transferred naturally or by any of a number of genetic engineering techniques from one organism to another." [SO:xp]	2928499	SOFA	SOFA	sequence	4	SO	sequence_feature	transgene
SO:0000903	\N	\N	"" []	SO:0000903	"" []	45811	\N	\N	sequence	0	SO	endogenous_retroviral_sequence	endogenous_retroviral_sequence
SO:0000751	SO:0000903	\N	"" []	SO:0000903	"" []	490502	\N	\N	sequence	1	SO	proviral_location	endogenous_retroviral_sequence
SO:0000735	SO:0000751	\N	"" []	SO:0000903	"" []	1073012	\N	\N	sequence	2	SO	sequence_location	endogenous_retroviral_sequence
SO:0000400	SO:0000735	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000903	"" []	1904061	\N	\N	sequence	3	SO	sequence_attribute	endogenous_retroviral_sequence
SO:0000904	\N	\N	"An attribute to describe the sequence of a feature, where the DNA is rearranged." [SO:ke]	SO:0000904	"An attribute to describe the sequence of a feature, where the DNA is rearranged." [SO:ke]	45812	\N	\N	sequence	0	SO	rearranged_at_DNA_level	rearranged_at_DNA_level
SO:0000133	SO:0000904	\N	"This attribute describes a gene where heritable changes other than those in the DNA sequence occur. These changes include: modification to the DNA (such as DNA methylation, the covalent modification of cytosine), and post-translational modification of histones." [SO:ke]	SO:0000904	"An attribute to describe the sequence of a feature, where the DNA is rearranged." [SO:ke]	490503	\N	\N	sequence	1	SO	epigenetically_modified	rearranged_at_DNA_level
SO:0000401	SO:0000133	\N	"" []	SO:0000904	"An attribute to describe the sequence of a feature, where the DNA is rearranged." [SO:ke]	1073013	\N	\N	sequence	2	SO	gene_attribute	rearranged_at_DNA_level
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000904	"An attribute to describe the sequence of a feature, where the DNA is rearranged." [SO:ke]	1904062	\N	\N	sequence	3	SO	feature_attribute	rearranged_at_DNA_level
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000904	"An attribute to describe the sequence of a feature, where the DNA is rearranged." [SO:ke]	2928500	\N	\N	sequence	4	SO	sequence_attribute	rearranged_at_DNA_level
SO:0000905	\N	\N	"An attribute describing the status of a feature, based on the available evidence." [SO:ke]	SO:0000905	"An attribute describing the status of a feature, based on the available evidence." [SO:ke]	45813	\N	\N	sequence	0	SO	status	status
SO:0000733	SO:0000905	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000905	"An attribute describing the status of a feature, based on the available evidence." [SO:ke]	490504	\N	\N	sequence	1	SO	feature_attribute	status
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000905	"An attribute describing the status of a feature, based on the available evidence." [SO:ke]	1073014	\N	\N	sequence	2	SO	sequence_attribute	status
SO:0000906	\N	\N	"Attribute to describe a feature that is independently known - not predicted." [SO:ke]	SO:0000906	"Attribute to describe a feature that is independently known - not predicted." [SO:ke]	45814	\N	\N	sequence	0	SO	independently_known	independently_known
SO:0000905	SO:0000906	\N	"An attribute describing the status of a feature, based on the available evidence." [SO:ke]	SO:0000906	"Attribute to describe a feature that is independently known - not predicted." [SO:ke]	490505	\N	\N	sequence	1	SO	status	independently_known
SO:0000733	SO:0000905	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000906	"Attribute to describe a feature that is independently known - not predicted." [SO:ke]	1073015	\N	\N	sequence	2	SO	feature_attribute	independently_known
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000906	"Attribute to describe a feature that is independently known - not predicted." [SO:ke]	1904063	\N	\N	sequence	3	SO	sequence_attribute	independently_known
SO:0000907	\N	\N	"An attribute to describe a feature that has been predicted using sequence similarity techniques." [SO:ke]	SO:0000907	"An attribute to describe a feature that has been predicted using sequence similarity techniques." [SO:ke]	45815	\N	\N	sequence	0	SO	supported_by_sequence_similarity	supported_by_sequence_similarity
SO:0000732	SO:0000907	\N	"An attribute describing an unverified region." [SO:ke]	SO:0000907	"An attribute to describe a feature that has been predicted using sequence similarity techniques." [SO:ke]	490506	\N	\N	sequence	1	SO	predicted	supported_by_sequence_similarity
SO:0000905	SO:0000732	\N	"An attribute describing the status of a feature, based on the available evidence." [SO:ke]	SO:0000907	"An attribute to describe a feature that has been predicted using sequence similarity techniques." [SO:ke]	1073016	\N	\N	sequence	2	SO	status	supported_by_sequence_similarity
SO:0000733	SO:0000905	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000907	"An attribute to describe a feature that has been predicted using sequence similarity techniques." [SO:ke]	1904064	\N	\N	sequence	3	SO	feature_attribute	supported_by_sequence_similarity
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000907	"An attribute to describe a feature that has been predicted using sequence similarity techniques." [SO:ke]	2928501	\N	\N	sequence	4	SO	sequence_attribute	supported_by_sequence_similarity
SO:0000908	\N	\N	"An attribute to describe a feature that has been predicted using sequence similarity of a known domain." [SO:ke]	SO:0000908	"An attribute to describe a feature that has been predicted using sequence similarity of a known domain." [SO:ke]	45816	\N	\N	sequence	0	SO	supported_by_domain_match	supported_by_domain_match
SO:0000907	SO:0000908	\N	"An attribute to describe a feature that has been predicted using sequence similarity techniques." [SO:ke]	SO:0000908	"An attribute to describe a feature that has been predicted using sequence similarity of a known domain." [SO:ke]	490507	\N	\N	sequence	1	SO	supported_by_sequence_similarity	supported_by_domain_match
SO:0000732	SO:0000907	\N	"An attribute describing an unverified region." [SO:ke]	SO:0000908	"An attribute to describe a feature that has been predicted using sequence similarity of a known domain." [SO:ke]	1073017	\N	\N	sequence	2	SO	predicted	supported_by_domain_match
SO:0000905	SO:0000732	\N	"An attribute describing the status of a feature, based on the available evidence." [SO:ke]	SO:0000908	"An attribute to describe a feature that has been predicted using sequence similarity of a known domain." [SO:ke]	1904065	\N	\N	sequence	3	SO	status	supported_by_domain_match
SO:0000733	SO:0000905	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000908	"An attribute to describe a feature that has been predicted using sequence similarity of a known domain." [SO:ke]	2928502	\N	\N	sequence	4	SO	feature_attribute	supported_by_domain_match
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000908	"An attribute to describe a feature that has been predicted using sequence similarity of a known domain." [SO:ke]	4001781	\N	\N	sequence	5	SO	sequence_attribute	supported_by_domain_match
SO:0000909	\N	\N	"An attribute to describe a feature that has been predicted using sequence similarity to EST or cDNA data." [SO:ke]	SO:0000909	"An attribute to describe a feature that has been predicted using sequence similarity to EST or cDNA data." [SO:ke]	45817	\N	\N	sequence	0	SO	supported_by_EST_or_cDNA	supported_by_EST_or_cDNA
SO:0000907	SO:0000909	\N	"An attribute to describe a feature that has been predicted using sequence similarity techniques." [SO:ke]	SO:0000909	"An attribute to describe a feature that has been predicted using sequence similarity to EST or cDNA data." [SO:ke]	490508	\N	\N	sequence	1	SO	supported_by_sequence_similarity	supported_by_EST_or_cDNA
SO:0000732	SO:0000907	\N	"An attribute describing an unverified region." [SO:ke]	SO:0000909	"An attribute to describe a feature that has been predicted using sequence similarity to EST or cDNA data." [SO:ke]	1073018	\N	\N	sequence	2	SO	predicted	supported_by_EST_or_cDNA
SO:0000905	SO:0000732	\N	"An attribute describing the status of a feature, based on the available evidence." [SO:ke]	SO:0000909	"An attribute to describe a feature that has been predicted using sequence similarity to EST or cDNA data." [SO:ke]	1904066	\N	\N	sequence	3	SO	status	supported_by_EST_or_cDNA
SO:0000733	SO:0000905	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000909	"An attribute to describe a feature that has been predicted using sequence similarity to EST or cDNA data." [SO:ke]	2928503	\N	\N	sequence	4	SO	feature_attribute	supported_by_EST_or_cDNA
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000909	"An attribute to describe a feature that has been predicted using sequence similarity to EST or cDNA data." [SO:ke]	4001782	\N	\N	sequence	5	SO	sequence_attribute	supported_by_EST_or_cDNA
SO:0000910	\N	\N	"" []	SO:0000910	"" []	45818	\N	\N	sequence	0	SO	orphan	orphan
SO:0000732	SO:0000910	\N	"An attribute describing an unverified region." [SO:ke]	SO:0000910	"" []	490509	\N	\N	sequence	1	SO	predicted	orphan
SO:0000905	SO:0000732	\N	"An attribute describing the status of a feature, based on the available evidence." [SO:ke]	SO:0000910	"" []	1073019	\N	\N	sequence	2	SO	status	orphan
SO:0000733	SO:0000905	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000910	"" []	1904067	\N	\N	sequence	3	SO	feature_attribute	orphan
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000910	"" []	2928504	\N	\N	sequence	4	SO	sequence_attribute	orphan
SO:0000911	\N	\N	"An attribute describing a feature that is predicted by a computer program that did not rely on sequence similarity." [SO:ke]	SO:0000911	"An attribute describing a feature that is predicted by a computer program that did not rely on sequence similarity." [SO:ke]	45819	\N	\N	sequence	0	SO	predicted_by_ab_initio_computation	predicted_by_ab_initio_computation
SO:0000732	SO:0000911	\N	"An attribute describing an unverified region." [SO:ke]	SO:0000911	"An attribute describing a feature that is predicted by a computer program that did not rely on sequence similarity." [SO:ke]	490510	\N	\N	sequence	1	SO	predicted	predicted_by_ab_initio_computation
SO:0000905	SO:0000732	\N	"An attribute describing the status of a feature, based on the available evidence." [SO:ke]	SO:0000911	"An attribute describing a feature that is predicted by a computer program that did not rely on sequence similarity." [SO:ke]	1073020	\N	\N	sequence	2	SO	status	predicted_by_ab_initio_computation
SO:0000733	SO:0000905	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000911	"An attribute describing a feature that is predicted by a computer program that did not rely on sequence similarity." [SO:ke]	1904068	\N	\N	sequence	3	SO	feature_attribute	predicted_by_ab_initio_computation
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000911	"An attribute describing a feature that is predicted by a computer program that did not rely on sequence similarity." [SO:ke]	2928505	\N	\N	sequence	4	SO	sequence_attribute	predicted_by_ab_initio_computation
SO:0000912	\N	biosapiens	"A motif of three consecutive residues and one H-bond in which: residue(i) is Aspartate or Asparagine (Asx), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2)." [http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0000912	"A motif of three consecutive residues and one H-bond in which: residue(i) is Aspartate or Asparagine (Asx), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2)." [http://www.ebi.ac.uk/msd-srv/msdmotif/]	45820	\N	biosapiens	sequence	0	SO	asx_turn	asx_turn
SO:0001128	SO:0000912	biosapiens	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	SO:0000912	"A motif of three consecutive residues and one H-bond in which: residue(i) is Aspartate or Asparagine (Asx), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2)." [http://www.ebi.ac.uk/msd-srv/msdmotif/]	490511	biosapiens	biosapiens	sequence	1	SO	polypeptide_turn_motif	asx_turn
SO:0001078	SO:0001128	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0000912	"A motif of three consecutive residues and one H-bond in which: residue(i) is Aspartate or Asparagine (Asx), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2)." [http://www.ebi.ac.uk/msd-srv/msdmotif/]	1073021	biosapiens	biosapiens	sequence	2	SO	polypeptide_secondary_structure	asx_turn
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0000912	"A motif of three consecutive residues and one H-bond in which: residue(i) is Aspartate or Asparagine (Asx), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2)." [http://www.ebi.ac.uk/msd-srv/msdmotif/]	1904069	biosapiens	biosapiens	sequence	3	SO	polypeptide_structural_region	asx_turn
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0000912	"A motif of three consecutive residues and one H-bond in which: residue(i) is Aspartate or Asparagine (Asx), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2)." [http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928506	biosapiens	biosapiens,SOFA	sequence	4	SO	polypeptide_region	asx_turn
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0000912	"A motif of three consecutive residues and one H-bond in which: residue(i) is Aspartate or Asparagine (Asx), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2)." [http://www.ebi.ac.uk/msd-srv/msdmotif/]	4001783	biosapiens,SOFA	SOFA	sequence	5	SO	polypeptide	asx_turn
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000912	"A motif of three consecutive residues and one H-bond in which: residue(i) is Aspartate or Asparagine (Asx), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2)." [http://www.ebi.ac.uk/msd-srv/msdmotif/]	4001784	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	asx_turn
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000912	"A motif of three consecutive residues and one H-bond in which: residue(i) is Aspartate or Asparagine (Asx), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2)." [http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966237	SOFA	SOFA	sequence	6	SO	biological_region	asx_turn
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000912	"A motif of three consecutive residues and one H-bond in which: residue(i) is Aspartate or Asparagine (Asx), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2)." [http://www.ebi.ac.uk/msd-srv/msdmotif/]	5741090	SOFA	SOFA	sequence	7	SO	region	asx_turn
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000912	"A motif of three consecutive residues and one H-bond in which: residue(i) is Aspartate or Asparagine (Asx), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2)." [http://www.ebi.ac.uk/msd-srv/msdmotif/]	6146644	SOFA	SOFA	sequence	8	SO	sequence_feature	asx_turn
SO:0000913	\N	\N	"A clone insert made from cDNA." [SO:xp]	SO:0000913	"A clone insert made from cDNA." [SO:xp]	45821	\N	\N	sequence	0	SO	cloned_cDNA_insert	cloned_cDNA_insert
SO:0000753	SO:0000913	\N	"The region of sequence that has been inserted and is being propagated by the clone." [SO:ke]	SO:0000913	"A clone insert made from cDNA." [SO:xp]	490512	\N	SOFA	sequence	1	SO	clone_insert	cloned_cDNA_insert
SO:0000151	SO:0000753	\N	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0000913	"A clone insert made from cDNA." [SO:xp]	1073022	SOFA	SOFA	sequence	2	SO	clone	cloned_cDNA_insert
SO:0000695	SO:0000753	\N	"A sequence used in experiment." [SO:ke]	SO:0000913	"A clone insert made from cDNA." [SO:xp]	1073023	SOFA	SOFA	sequence	2	SO	reagent	cloned_cDNA_insert
SO:0000695	SO:0000151	\N	"A sequence used in experiment." [SO:ke]	SO:0000913	"A clone insert made from cDNA." [SO:xp]	1904070	SOFA	SOFA	sequence	3	SO	reagent	cloned_cDNA_insert
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000913	"A clone insert made from cDNA." [SO:xp]	2928507	SOFA	SOFA	sequence	4	SO	biomaterial_region	cloned_cDNA_insert
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000913	"A clone insert made from cDNA." [SO:xp]	3173906	SOFA	SOFA	sequence	5	SO	region	cloned_cDNA_insert
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000913	"A clone insert made from cDNA." [SO:xp]	4385758	SOFA	SOFA	sequence	6	SO	sequence_feature	cloned_cDNA_insert
SO:0000914	\N	\N	"A clone insert made from genomic DNA." [SO:xp]	SO:0000914	"A clone insert made from genomic DNA." [SO:xp]	45822	\N	\N	sequence	0	SO	cloned_genomic_insert	cloned_genomic_insert
SO:0000753	SO:0000914	\N	"The region of sequence that has been inserted and is being propagated by the clone." [SO:ke]	SO:0000914	"A clone insert made from genomic DNA." [SO:xp]	490513	\N	SOFA	sequence	1	SO	clone_insert	cloned_genomic_insert
SO:0000151	SO:0000753	\N	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0000914	"A clone insert made from genomic DNA." [SO:xp]	1073024	SOFA	SOFA	sequence	2	SO	clone	cloned_genomic_insert
SO:0000695	SO:0000753	\N	"A sequence used in experiment." [SO:ke]	SO:0000914	"A clone insert made from genomic DNA." [SO:xp]	1073025	SOFA	SOFA	sequence	2	SO	reagent	cloned_genomic_insert
SO:0000695	SO:0000151	\N	"A sequence used in experiment." [SO:ke]	SO:0000914	"A clone insert made from genomic DNA." [SO:xp]	1904072	SOFA	SOFA	sequence	3	SO	reagent	cloned_genomic_insert
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000914	"A clone insert made from genomic DNA." [SO:xp]	2928509	SOFA	SOFA	sequence	4	SO	biomaterial_region	cloned_genomic_insert
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000914	"A clone insert made from genomic DNA." [SO:xp]	3173907	SOFA	SOFA	sequence	5	SO	region	cloned_genomic_insert
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000914	"A clone insert made from genomic DNA." [SO:xp]	4385759	SOFA	SOFA	sequence	6	SO	sequence_feature	cloned_genomic_insert
SO:0000915	\N	\N	"A clone insert that is engineered." [SO:xp]	SO:0000915	"A clone insert that is engineered." [SO:xp]	45823	\N	\N	sequence	0	SO	engineered_insert	engineered_insert
SO:0000753	SO:0000915	\N	"The region of sequence that has been inserted and is being propagated by the clone." [SO:ke]	SO:0000915	"A clone insert that is engineered." [SO:xp]	490514	\N	SOFA	sequence	1	SO	clone_insert	engineered_insert
SO:0000804	SO:0000915	\N	"A region that is engineered." [SO:xp]	SO:0000915	"A clone insert that is engineered." [SO:xp]	490515	\N	\N	sequence	1	SO	engineered_region	engineered_insert
SO:0000151	SO:0000753	\N	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0000915	"A clone insert that is engineered." [SO:xp]	1073026	SOFA	SOFA	sequence	2	SO	clone	engineered_insert
SO:0000695	SO:0000753	\N	"A sequence used in experiment." [SO:ke]	SO:0000915	"A clone insert that is engineered." [SO:xp]	1073027	SOFA	SOFA	sequence	2	SO	reagent	engineered_insert
SO:0001409	SO:0000804	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000915	"A clone insert that is engineered." [SO:xp]	1073028	\N	SOFA	sequence	2	SO	biomaterial_region	engineered_insert
SO:0000695	SO:0000151	\N	"A sequence used in experiment." [SO:ke]	SO:0000915	"A clone insert that is engineered." [SO:xp]	1904074	SOFA	SOFA	sequence	3	SO	reagent	engineered_insert
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000915	"A clone insert that is engineered." [SO:xp]	2928511	SOFA	SOFA	sequence	4	SO	biomaterial_region	engineered_insert
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000915	"A clone insert that is engineered." [SO:xp]	3173908	SOFA	SOFA	sequence	5	SO	region	engineered_insert
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000915	"A clone insert that is engineered." [SO:xp]	4132320	SOFA	SOFA	sequence	6	SO	sequence_feature	engineered_insert
SO:0000929	\N	\N	"An mRNA that is edited." [SO:xp]	SO:0000929	"An mRNA that is edited." [SO:xp]	45824	\N	\N	sequence	0	SO	edited_mRNA	edited_mRNA
SO:0000234	SO:0000929	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000929	"An mRNA that is edited." [SO:xp]	490516	\N	SOFA	sequence	1	SO	mRNA	edited_mRNA
SO:0000873	SO:0000929	\N	"A transcript that is edited." [SO:ke]	SO:0000929	"An mRNA that is edited." [SO:xp]	490517	\N	\N	sequence	1	SO	edited_transcript	edited_mRNA
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000929	"An mRNA that is edited." [SO:xp]	1073029	SOFA	SOFA	sequence	2	SO	mature_transcript	edited_mRNA
SO:0000673	SO:0000873	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000929	"An mRNA that is edited." [SO:xp]	1073030	\N	SOFA	sequence	2	SO	transcript	edited_mRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000929	"An mRNA that is edited." [SO:xp]	1904077	SOFA	SOFA	sequence	3	SO	transcript	edited_mRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000929	"An mRNA that is edited." [SO:xp]	2928514	SOFA	SOFA	sequence	4	SO	gene_member_region	edited_mRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000929	"An mRNA that is edited." [SO:xp]	3173910	SOFA	SOFA	sequence	5	SO	biological_region	edited_mRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000929	"An mRNA that is edited." [SO:xp]	4385760	SOFA	SOFA	sequence	6	SO	region	edited_mRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000929	"An mRNA that is edited." [SO:xp]	5407419	SOFA	SOFA	sequence	7	SO	sequence_feature	edited_mRNA
SO:0000930	\N	\N	"A region of guide RNA." [SO:ma]	SO:0000930	"A region of guide RNA." [SO:ma]	45825	\N	\N	sequence	0	SO	guide_RNA_region	guide_RNA_region
SO:0000602	SO:0000930	\N	"A short 3'-uridylated RNA that can form a duplex (except for its post-transcriptionally added oligo_U tail (SO:0000609)) with a stretch of mature edited mRNA." [http://www.rna.ucla.edu/index.html]	SO:0000930	"A region of guide RNA." [SO:ma]	490518	\N	SOFA	sequence	1	SO	guide_RNA	guide_RNA_region
SO:0000834	SO:0000930	\N	"A region of a mature transcript." [SO:ke]	SO:0000930	"A region of guide RNA." [SO:ma]	490519	\N	SOFA	sequence	1	SO	mature_transcript_region	guide_RNA_region
SO:0000655	SO:0000602	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000930	"A region of guide RNA." [SO:ma]	1073031	SOFA	SOFA	sequence	2	SO	ncRNA	guide_RNA_region
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0000930	"A region of guide RNA." [SO:ma]	1073032	SOFA	SOFA	sequence	2	SO	transcript_region	guide_RNA_region
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000930	"A region of guide RNA." [SO:ma]	1904079	SOFA	SOFA	sequence	3	SO	mature_transcript	guide_RNA_region
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000930	"A region of guide RNA." [SO:ma]	1904080	SOFA	SOFA	sequence	3	SO	transcript	guide_RNA_region
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000930	"A region of guide RNA." [SO:ma]	1904081	SOFA	SOFA	sequence	3	SO	biological_region	guide_RNA_region
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000930	"A region of guide RNA." [SO:ma]	2928516	SOFA	SOFA	sequence	4	SO	transcript	guide_RNA_region
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000930	"A region of guide RNA." [SO:ma]	4001788	SOFA	SOFA	sequence	5	SO	gene_member_region	guide_RNA_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000930	"A region of guide RNA." [SO:ma]	5407420	SOFA	SOFA	sequence	7	SO	region	guide_RNA_region
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000930	"A region of guide RNA." [SO:ma]	4385761	SOFA	SOFA	sequence	6	SO	biological_region	guide_RNA_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000930	"A region of guide RNA." [SO:ma]	5876438	SOFA	SOFA	sequence	8	SO	sequence_feature	guide_RNA_region
SO:0000931	\N	\N	"A region of a guide_RNA that base-pairs to a target mRNA." [SO:jk]	SO:0000931	"A region of a guide_RNA that base-pairs to a target mRNA." [SO:jk]	45826	\N	\N	sequence	0	SO	anchor_region	anchor_region
SO:0000930	SO:0000931	\N	"A region of guide RNA." [SO:ma]	SO:0000931	"A region of a guide_RNA that base-pairs to a target mRNA." [SO:jk]	490520	\N	\N	sequence	1	SO	guide_RNA_region	anchor_region
SO:0000602	SO:0000930	\N	"A short 3'-uridylated RNA that can form a duplex (except for its post-transcriptionally added oligo_U tail (SO:0000609)) with a stretch of mature edited mRNA." [http://www.rna.ucla.edu/index.html]	SO:0000931	"A region of a guide_RNA that base-pairs to a target mRNA." [SO:jk]	1073033	\N	SOFA	sequence	2	SO	guide_RNA	anchor_region
SO:0000834	SO:0000930	\N	"A region of a mature transcript." [SO:ke]	SO:0000931	"A region of a guide_RNA that base-pairs to a target mRNA." [SO:jk]	1073034	\N	SOFA	sequence	2	SO	mature_transcript_region	anchor_region
SO:0000655	SO:0000602	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000931	"A region of a guide_RNA that base-pairs to a target mRNA." [SO:jk]	1904082	SOFA	SOFA	sequence	3	SO	ncRNA	anchor_region
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0000931	"A region of a guide_RNA that base-pairs to a target mRNA." [SO:jk]	1904083	SOFA	SOFA	sequence	3	SO	transcript_region	anchor_region
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000931	"A region of a guide_RNA that base-pairs to a target mRNA." [SO:jk]	2928519	SOFA	SOFA	sequence	4	SO	mature_transcript	anchor_region
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000931	"A region of a guide_RNA that base-pairs to a target mRNA." [SO:jk]	2928520	SOFA	SOFA	sequence	4	SO	transcript	anchor_region
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000931	"A region of a guide_RNA that base-pairs to a target mRNA." [SO:jk]	2928521	SOFA	SOFA	sequence	4	SO	biological_region	anchor_region
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000931	"A region of a guide_RNA that base-pairs to a target mRNA." [SO:jk]	4001791	SOFA	SOFA	sequence	5	SO	transcript	anchor_region
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000931	"A region of a guide_RNA that base-pairs to a target mRNA." [SO:jk]	4966241	SOFA	SOFA	sequence	6	SO	gene_member_region	anchor_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000931	"A region of a guide_RNA that base-pairs to a target mRNA." [SO:jk]	6146645	SOFA	SOFA	sequence	8	SO	region	anchor_region
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000931	"A region of a guide_RNA that base-pairs to a target mRNA." [SO:jk]	5407421	SOFA	SOFA	sequence	7	SO	biological_region	anchor_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000931	"A region of a guide_RNA that base-pairs to a target mRNA." [SO:jk]	6469736	SOFA	SOFA	sequence	9	SO	sequence_feature	anchor_region
SO:0000932	\N	\N	"" []	SO:0000932	"" []	45827	\N	\N	sequence	0	SO	pre_edited_mRNA	pre_edited_mRNA
SO:0000120	SO:0000932	\N	"A primary transcript that, at least in part, encodes one or more proteins." [SO:ke]	SO:0000932	"" []	490521	\N	SOFA	sequence	1	SO	protein_coding_primary_transcript	pre_edited_mRNA
SO:0000185	SO:0000120	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000932	"" []	1073035	SOFA	SOFA	sequence	2	SO	primary_transcript	pre_edited_mRNA
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000932	"" []	1904084	SOFA	SOFA	sequence	3	SO	transcript	pre_edited_mRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000932	"" []	2928522	SOFA	SOFA	sequence	4	SO	gene_member_region	pre_edited_mRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000932	"" []	4001794	SOFA	SOFA	sequence	5	SO	biological_region	pre_edited_mRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000932	"" []	4966244	SOFA	SOFA	sequence	6	SO	region	pre_edited_mRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000932	"" []	5741093	SOFA	SOFA	sequence	7	SO	sequence_feature	pre_edited_mRNA
SO:0000933	\N	\N	"An attribute to describe a feature between stages of processing." [SO:ke]	SO:0000933	"An attribute to describe a feature between stages of processing." [SO:ke]	45828	\N	\N	sequence	0	SO	intermediate	intermediate
SO:0000733	SO:0000933	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000933	"An attribute to describe a feature between stages of processing." [SO:ke]	490522	\N	\N	sequence	1	SO	feature_attribute	intermediate
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000933	"An attribute to describe a feature between stages of processing." [SO:ke]	1073036	\N	\N	sequence	2	SO	sequence_attribute	intermediate
SO:0000934	\N	\N	"A miRNA target site is a binding site where the molecule is a micro RNA." [FB:cds]	SO:0000934	"A miRNA target site is a binding site where the molecule is a micro RNA." [FB:cds]	45829	\N	\N	sequence	0	SO	miRNA_target_site	miRNA_target_site
SO:0001655	SO:0000934	\N	"A binding site that, in the molecule, interacts selectively and non-covalently with nucleotide residues." [SO:cb]	SO:0000934	"A miRNA target site is a binding site where the molecule is a micro RNA." [FB:cds]	490523	\N	\N	sequence	1	SO	nucleotide_binding_site	miRNA_target_site
SO:0000409	SO:0001655	\N	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0000934	"A miRNA target site is a binding site where the molecule is a micro RNA." [FB:cds]	1073037	\N	biosapiens,SOFA	sequence	2	SO	binding_site	miRNA_target_site
SO:0001411	SO:0000409	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000934	"A miRNA target site is a binding site where the molecule is a micro RNA." [FB:cds]	1904085	biosapiens,SOFA	SOFA	sequence	3	SO	biological_region	miRNA_target_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000934	"A miRNA target site is a binding site where the molecule is a micro RNA." [FB:cds]	2928523	SOFA	SOFA	sequence	4	SO	region	miRNA_target_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000934	"A miRNA target site is a binding site where the molecule is a micro RNA." [FB:cds]	4001795	SOFA	SOFA	sequence	5	SO	sequence_feature	miRNA_target_site
SO:0000935	\N	\N	"A CDS that is edited." [SO:xp]	SO:0000935	"A CDS that is edited." [SO:xp]	45830	\N	\N	sequence	0	SO	edited_CDS	edited_CDS
SO:0000316	SO:0000935	\N	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	SO:0000935	"A CDS that is edited." [SO:xp]	490524	\N	SOFA	sequence	1	SO	CDS	edited_CDS
SO:0000836	SO:0000316	\N	"A region of an mRNA." [SO:cb]	SO:0000935	"A CDS that is edited." [SO:xp]	1073038	SOFA	SOFA	sequence	2	SO	mRNA_region	edited_CDS
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000935	"A CDS that is edited." [SO:xp]	1904086	SOFA	SOFA	sequence	3	SO	mRNA	edited_CDS
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:0000935	"A CDS that is edited." [SO:xp]	1904087	SOFA	SOFA	sequence	3	SO	mature_transcript_region	edited_CDS
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000935	"A CDS that is edited." [SO:xp]	2928524	SOFA	SOFA	sequence	4	SO	mature_transcript	edited_CDS
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0000935	"A CDS that is edited." [SO:xp]	2928525	SOFA	SOFA	sequence	4	SO	transcript_region	edited_CDS
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000935	"A CDS that is edited." [SO:xp]	4001796	SOFA	SOFA	sequence	5	SO	transcript	edited_CDS
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000935	"A CDS that is edited." [SO:xp]	4001797	SOFA	SOFA	sequence	5	SO	transcript	edited_CDS
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000935	"A CDS that is edited." [SO:xp]	4001798	SOFA	SOFA	sequence	5	SO	biological_region	edited_CDS
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000935	"A CDS that is edited." [SO:xp]	4966245	SOFA	SOFA	sequence	6	SO	gene_member_region	edited_CDS
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000935	"A CDS that is edited." [SO:xp]	6310989	SOFA	SOFA	sequence	8	SO	region	edited_CDS
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000935	"A CDS that is edited." [SO:xp]	5741094	SOFA	SOFA	sequence	7	SO	biological_region	edited_CDS
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000935	"A CDS that is edited." [SO:xp]	6550270	SOFA	SOFA	sequence	9	SO	sequence_feature	edited_CDS
SO:0000936	\N	\N	"" []	SO:0000936	"" []	45831	\N	\N	sequence	0	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment	vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment
SO:0000301	SO:0000936	\N	"" []	SO:0000936	"" []	490525	\N	\N	sequence	1	SO	vertebrate_immune_system_gene_recombination_feature	vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment
SO:0000300	SO:0000301	\N	"" []	SO:0000936	"" []	1073039	\N	\N	sequence	2	SO	recombination_feature_of_rearranged_gene	vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment
SO:0000299	SO:0000300	\N	"" []	SO:0000936	"" []	1904088	\N	\N	sequence	3	SO	specific_recombination_site	vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment
SO:0000669	SO:0000299	\N	"" []	SO:0000936	"" []	2928526	\N	\N	sequence	4	SO	sequence_rearrangement_feature	vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment
SO:0000298	SO:0000669	\N	"" []	SO:0000936	"" []	4001799	\N	\N	sequence	5	SO	recombination_feature	vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000936	"" []	4966247	\N	SOFA	sequence	6	SO	biological_region	vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000936	"" []	5741096	SOFA	SOFA	sequence	7	SO	region	vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000936	"" []	6310990	SOFA	SOFA	sequence	8	SO	sequence_feature	vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment
SO:0000938	\N	\N	"" []	SO:0000938	"" []	45832	\N	\N	sequence	0	SO	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster
SO:0000301	SO:0000938	\N	"" []	SO:0000938	"" []	490526	\N	\N	sequence	1	SO	vertebrate_immune_system_gene_recombination_feature	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster
SO:0000300	SO:0000301	\N	"" []	SO:0000938	"" []	1073040	\N	\N	sequence	2	SO	recombination_feature_of_rearranged_gene	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster
SO:0000299	SO:0000300	\N	"" []	SO:0000938	"" []	1904089	\N	\N	sequence	3	SO	specific_recombination_site	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster
SO:0000669	SO:0000299	\N	"" []	SO:0000938	"" []	2928527	\N	\N	sequence	4	SO	sequence_rearrangement_feature	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster
SO:0000298	SO:0000669	\N	"" []	SO:0000938	"" []	4001800	\N	\N	sequence	5	SO	recombination_feature	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000938	"" []	4966248	\N	SOFA	sequence	6	SO	biological_region	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000938	"" []	5741097	SOFA	SOFA	sequence	7	SO	region	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000938	"" []	6310991	SOFA	SOFA	sequence	8	SO	sequence_feature	vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster
SO:0000939	\N	\N	"" []	SO:0000939	"" []	45833	\N	\N	sequence	0	SO	vertebrate_immune_system_gene_recombination_signal_feature	vertebrate_immune_system_gene_recombination_signal_feature
SO:0000301	SO:0000939	\N	"" []	SO:0000939	"" []	490527	\N	\N	sequence	1	SO	vertebrate_immune_system_gene_recombination_feature	vertebrate_immune_system_gene_recombination_signal_feature
SO:0000300	SO:0000301	\N	"" []	SO:0000939	"" []	1073041	\N	\N	sequence	2	SO	recombination_feature_of_rearranged_gene	vertebrate_immune_system_gene_recombination_signal_feature
SO:0000299	SO:0000300	\N	"" []	SO:0000939	"" []	1904090	\N	\N	sequence	3	SO	specific_recombination_site	vertebrate_immune_system_gene_recombination_signal_feature
SO:0000669	SO:0000299	\N	"" []	SO:0000939	"" []	2928528	\N	\N	sequence	4	SO	sequence_rearrangement_feature	vertebrate_immune_system_gene_recombination_signal_feature
SO:0000298	SO:0000669	\N	"" []	SO:0000939	"" []	4001801	\N	\N	sequence	5	SO	recombination_feature	vertebrate_immune_system_gene_recombination_signal_feature
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000939	"" []	4966249	\N	SOFA	sequence	6	SO	biological_region	vertebrate_immune_system_gene_recombination_signal_feature
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000939	"" []	5741098	SOFA	SOFA	sequence	7	SO	region	vertebrate_immune_system_gene_recombination_signal_feature
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000939	"" []	6310992	SOFA	SOFA	sequence	8	SO	sequence_feature	vertebrate_immune_system_gene_recombination_signal_feature
SO:0000940	\N	\N	"" []	SO:0000940	"" []	45834	\N	\N	sequence	0	SO	recombinationally_rearranged	recombinationally_rearranged
SO:0000733	SO:0000940	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000940	"" []	490528	\N	\N	sequence	1	SO	feature_attribute	recombinationally_rearranged
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000940	"" []	1073042	\N	\N	sequence	2	SO	sequence_attribute	recombinationally_rearranged
SO:0000941	\N	\N	"A recombinationally rearranged gene of the vertebrate immune system." [SO:xp]	SO:0000941	"A recombinationally rearranged gene of the vertebrate immune system." [SO:xp]	45835	\N	\N	sequence	0	SO	recombinationally_rearranged_vertebrate_immune_system_gene	recombinationally_rearranged_vertebrate_immune_system_gene
SO:0000456	SO:0000941	\N	"A gene that is recombinationally rearranged." [SO:ke]	SO:0000941	"A recombinationally rearranged gene of the vertebrate immune system." [SO:xp]	490529	\N	\N	sequence	1	SO	recombinationally_rearranged_gene	recombinationally_rearranged_vertebrate_immune_system_gene
SO:0000704	SO:0000456	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000941	"A recombinationally rearranged gene of the vertebrate immune system." [SO:xp]	1073043	\N	SOFA	sequence	2	SO	gene	recombinationally_rearranged_vertebrate_immune_system_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000941	"A recombinationally rearranged gene of the vertebrate immune system." [SO:xp]	1904091	SOFA	SOFA	sequence	3	SO	biological_region	recombinationally_rearranged_vertebrate_immune_system_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000941	"A recombinationally rearranged gene of the vertebrate immune system." [SO:xp]	2928529	SOFA	SOFA	sequence	4	SO	region	recombinationally_rearranged_vertebrate_immune_system_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000941	"A recombinationally rearranged gene of the vertebrate immune system." [SO:xp]	4001802	SOFA	SOFA	sequence	5	SO	sequence_feature	recombinationally_rearranged_vertebrate_immune_system_gene
SO:0000942	\N	\N	"An integration/excision site of a phage chromosome at which a recombinase acts to insert the phage DNA at a cognate integration/excision site on a bacterial chromosome." [SO:as]	SO:0000942	"An integration/excision site of a phage chromosome at which a recombinase acts to insert the phage DNA at a cognate integration/excision site on a bacterial chromosome." [SO:as]	45836	\N	\N	sequence	0	SO	attP_site	attP_site
SO:0000946	SO:0000942	\N	"A region specifically recognised by a recombinase, which inserts or removes another region marked by a distinct cognate integration/excision site." [SO:as]	SO:0000942	"An integration/excision site of a phage chromosome at which a recombinase acts to insert the phage DNA at a cognate integration/excision site on a bacterial chromosome." [SO:as]	490530	\N	\N	sequence	1	SO	integration_excision_site	attP_site
SO:0001042	SO:0000942	\N	"The nucleotide sequence of a virus that infects bacteria." [SO:ke]	SO:0000942	"An integration/excision site of a phage chromosome at which a recombinase acts to insert the phage DNA at a cognate integration/excision site on a bacterial chromosome." [SO:as]	490531	\N	\N	sequence	1	SO	phage_sequence	attP_site
SO:0000342	SO:0000946	\N	"" []	SO:0000942	"An integration/excision site of a phage chromosome at which a recombinase acts to insert the phage DNA at a cognate integration/excision site on a bacterial chromosome." [SO:as]	1073044	\N	\N	sequence	2	SO	site_specific_recombination_target_region	attP_site
SO:0001041	SO:0001042	\N	"The region of nucleotide sequence of a virus, a submicroscopic particle that replicates by infecting a host cell." [SO:ke]	SO:0000942	"An integration/excision site of a phage chromosome at which a recombinase acts to insert the phage DNA at a cognate integration/excision site on a bacterial chromosome." [SO:as]	1073045	\N	\N	sequence	2	SO	viral_sequence	attP_site
SO:0000299	SO:0000342	\N	"" []	SO:0000942	"An integration/excision site of a phage chromosome at which a recombinase acts to insert the phage DNA at a cognate integration/excision site on a bacterial chromosome." [SO:as]	1904092	\N	\N	sequence	3	SO	specific_recombination_site	attP_site
SO:0001038	SO:0001041	\N	"An MGE that is not integrated into the host chromosome." [SO:ke]	SO:0000942	"An integration/excision site of a phage chromosome at which a recombinase acts to insert the phage DNA at a cognate integration/excision site on a bacterial chromosome." [SO:as]	1904093	\N	\N	sequence	3	SO	extrachromosomal_mobile_genetic_element	attP_site
SO:0001235	SO:0001041	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000942	"An integration/excision site of a phage chromosome at which a recombinase acts to insert the phage DNA at a cognate integration/excision site on a bacterial chromosome." [SO:as]	1904094	\N	SOFA	sequence	3	SO	replicon	attP_site
SO:0000669	SO:0000299	\N	"" []	SO:0000942	"An integration/excision site of a phage chromosome at which a recombinase acts to insert the phage DNA at a cognate integration/excision site on a bacterial chromosome." [SO:as]	2928530	\N	\N	sequence	4	SO	sequence_rearrangement_feature	attP_site
SO:0001037	SO:0001038	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000942	"An integration/excision site of a phage chromosome at which a recombinase acts to insert the phage DNA at a cognate integration/excision site on a bacterial chromosome." [SO:as]	2928531	\N	SOFA	sequence	4	SO	mobile_genetic_element	attP_site
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000942	"An integration/excision site of a phage chromosome at which a recombinase acts to insert the phage DNA at a cognate integration/excision site on a bacterial chromosome." [SO:as]	2928532	SOFA	SOFA	sequence	4	SO	biological_region	attP_site
SO:0000298	SO:0000669	\N	"" []	SO:0000942	"An integration/excision site of a phage chromosome at which a recombinase acts to insert the phage DNA at a cognate integration/excision site on a bacterial chromosome." [SO:as]	4001803	\N	\N	sequence	5	SO	recombination_feature	attP_site
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000942	"An integration/excision site of a phage chromosome at which a recombinase acts to insert the phage DNA at a cognate integration/excision site on a bacterial chromosome." [SO:as]	4001804	SOFA	SOFA	sequence	5	SO	biological_region	attP_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000942	"An integration/excision site of a phage chromosome at which a recombinase acts to insert the phage DNA at a cognate integration/excision site on a bacterial chromosome." [SO:as]	5741099	SOFA	SOFA	sequence	7	SO	region	attP_site
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000942	"An integration/excision site of a phage chromosome at which a recombinase acts to insert the phage DNA at a cognate integration/excision site on a bacterial chromosome." [SO:as]	4966250	\N	SOFA	sequence	6	SO	biological_region	attP_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000942	"An integration/excision site of a phage chromosome at which a recombinase acts to insert the phage DNA at a cognate integration/excision site on a bacterial chromosome." [SO:as]	5996411	SOFA	SOFA	sequence	8	SO	sequence_feature	attP_site
SO:0000943	\N	\N	"An integration/excision site of a bacterial chromosome at which a recombinase acts to insert foreign DNA containing a cognate integration/excision site." [SO:as]	SO:0000943	"An integration/excision site of a bacterial chromosome at which a recombinase acts to insert foreign DNA containing a cognate integration/excision site." [SO:as]	45837	\N	\N	sequence	0	SO	attB_site	attB_site
SO:0000946	SO:0000943	\N	"A region specifically recognised by a recombinase, which inserts or removes another region marked by a distinct cognate integration/excision site." [SO:as]	SO:0000943	"An integration/excision site of a bacterial chromosome at which a recombinase acts to insert foreign DNA containing a cognate integration/excision site." [SO:as]	490532	\N	\N	sequence	1	SO	integration_excision_site	attB_site
SO:0000342	SO:0000946	\N	"" []	SO:0000943	"An integration/excision site of a bacterial chromosome at which a recombinase acts to insert foreign DNA containing a cognate integration/excision site." [SO:as]	1073046	\N	\N	sequence	2	SO	site_specific_recombination_target_region	attB_site
SO:0000299	SO:0000342	\N	"" []	SO:0000943	"An integration/excision site of a bacterial chromosome at which a recombinase acts to insert foreign DNA containing a cognate integration/excision site." [SO:as]	1904095	\N	\N	sequence	3	SO	specific_recombination_site	attB_site
SO:0000669	SO:0000299	\N	"" []	SO:0000943	"An integration/excision site of a bacterial chromosome at which a recombinase acts to insert foreign DNA containing a cognate integration/excision site." [SO:as]	2928533	\N	\N	sequence	4	SO	sequence_rearrangement_feature	attB_site
SO:0000298	SO:0000669	\N	"" []	SO:0000943	"An integration/excision site of a bacterial chromosome at which a recombinase acts to insert foreign DNA containing a cognate integration/excision site." [SO:as]	4001806	\N	\N	sequence	5	SO	recombination_feature	attB_site
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000943	"An integration/excision site of a bacterial chromosome at which a recombinase acts to insert foreign DNA containing a cognate integration/excision site." [SO:as]	4966253	\N	SOFA	sequence	6	SO	biological_region	attB_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000943	"An integration/excision site of a bacterial chromosome at which a recombinase acts to insert foreign DNA containing a cognate integration/excision site." [SO:as]	5741100	SOFA	SOFA	sequence	7	SO	region	attB_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000943	"An integration/excision site of a bacterial chromosome at which a recombinase acts to insert foreign DNA containing a cognate integration/excision site." [SO:as]	6310993	SOFA	SOFA	sequence	8	SO	sequence_feature	attB_site
SO:0000944	\N	\N	"A region that results from recombination between attP_site and attB_site, composed of the 5' portion of attB_site and the 3' portion of attP_site." [SO:as]	SO:0000944	"A region that results from recombination between attP_site and attB_site, composed of the 5' portion of attB_site and the 3' portion of attP_site." [SO:as]	45838	\N	\N	sequence	0	SO	attL_site	attL_site
SO:0000946	SO:0000944	\N	"A region specifically recognised by a recombinase, which inserts or removes another region marked by a distinct cognate integration/excision site." [SO:as]	SO:0000944	"A region that results from recombination between attP_site and attB_site, composed of the 5' portion of attB_site and the 3' portion of attP_site." [SO:as]	490533	\N	\N	sequence	1	SO	integration_excision_site	attL_site
SO:0000342	SO:0000946	\N	"" []	SO:0000944	"A region that results from recombination between attP_site and attB_site, composed of the 5' portion of attB_site and the 3' portion of attP_site." [SO:as]	1073047	\N	\N	sequence	2	SO	site_specific_recombination_target_region	attL_site
SO:0000299	SO:0000342	\N	"" []	SO:0000944	"A region that results from recombination between attP_site and attB_site, composed of the 5' portion of attB_site and the 3' portion of attP_site." [SO:as]	1904096	\N	\N	sequence	3	SO	specific_recombination_site	attL_site
SO:0000669	SO:0000299	\N	"" []	SO:0000944	"A region that results from recombination between attP_site and attB_site, composed of the 5' portion of attB_site and the 3' portion of attP_site." [SO:as]	2928534	\N	\N	sequence	4	SO	sequence_rearrangement_feature	attL_site
SO:0000298	SO:0000669	\N	"" []	SO:0000944	"A region that results from recombination between attP_site and attB_site, composed of the 5' portion of attB_site and the 3' portion of attP_site." [SO:as]	4001807	\N	\N	sequence	5	SO	recombination_feature	attL_site
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000944	"A region that results from recombination between attP_site and attB_site, composed of the 5' portion of attB_site and the 3' portion of attP_site." [SO:as]	4966254	\N	SOFA	sequence	6	SO	biological_region	attL_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000944	"A region that results from recombination between attP_site and attB_site, composed of the 5' portion of attB_site and the 3' portion of attP_site." [SO:as]	5741101	SOFA	SOFA	sequence	7	SO	region	attL_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000944	"A region that results from recombination between attP_site and attB_site, composed of the 5' portion of attB_site and the 3' portion of attP_site." [SO:as]	6310994	SOFA	SOFA	sequence	8	SO	sequence_feature	attL_site
SO:0000945	\N	\N	"A region that results from recombination between attP_site and attB_site, composed of the 5' portion of attP_site and the 3' portion of attB_site." [SO:as]	SO:0000945	"A region that results from recombination between attP_site and attB_site, composed of the 5' portion of attP_site and the 3' portion of attB_site." [SO:as]	45839	\N	\N	sequence	0	SO	attR_site	attR_site
SO:0000946	SO:0000945	\N	"A region specifically recognised by a recombinase, which inserts or removes another region marked by a distinct cognate integration/excision site." [SO:as]	SO:0000945	"A region that results from recombination between attP_site and attB_site, composed of the 5' portion of attP_site and the 3' portion of attB_site." [SO:as]	490534	\N	\N	sequence	1	SO	integration_excision_site	attR_site
SO:0000342	SO:0000946	\N	"" []	SO:0000945	"A region that results from recombination between attP_site and attB_site, composed of the 5' portion of attP_site and the 3' portion of attB_site." [SO:as]	1073048	\N	\N	sequence	2	SO	site_specific_recombination_target_region	attR_site
SO:0000299	SO:0000342	\N	"" []	SO:0000945	"A region that results from recombination between attP_site and attB_site, composed of the 5' portion of attP_site and the 3' portion of attB_site." [SO:as]	1904097	\N	\N	sequence	3	SO	specific_recombination_site	attR_site
SO:0000669	SO:0000299	\N	"" []	SO:0000945	"A region that results from recombination between attP_site and attB_site, composed of the 5' portion of attP_site and the 3' portion of attB_site." [SO:as]	2928535	\N	\N	sequence	4	SO	sequence_rearrangement_feature	attR_site
SO:0000298	SO:0000669	\N	"" []	SO:0000945	"A region that results from recombination between attP_site and attB_site, composed of the 5' portion of attP_site and the 3' portion of attB_site." [SO:as]	4001808	\N	\N	sequence	5	SO	recombination_feature	attR_site
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000945	"A region that results from recombination between attP_site and attB_site, composed of the 5' portion of attP_site and the 3' portion of attB_site." [SO:as]	4966255	\N	SOFA	sequence	6	SO	biological_region	attR_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000945	"A region that results from recombination between attP_site and attB_site, composed of the 5' portion of attP_site and the 3' portion of attB_site." [SO:as]	5741102	SOFA	SOFA	sequence	7	SO	region	attR_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000945	"A region that results from recombination between attP_site and attB_site, composed of the 5' portion of attP_site and the 3' portion of attB_site." [SO:as]	6310995	SOFA	SOFA	sequence	8	SO	sequence_feature	attR_site
SO:0000946	\N	\N	"A region specifically recognised by a recombinase, which inserts or removes another region marked by a distinct cognate integration/excision site." [SO:as]	SO:0000946	"A region specifically recognised by a recombinase, which inserts or removes another region marked by a distinct cognate integration/excision site." [SO:as]	45840	\N	\N	sequence	0	SO	integration_excision_site	integration_excision_site
SO:0000342	SO:0000946	\N	"" []	SO:0000946	"A region specifically recognised by a recombinase, which inserts or removes another region marked by a distinct cognate integration/excision site." [SO:as]	490535	\N	\N	sequence	1	SO	site_specific_recombination_target_region	integration_excision_site
SO:0000299	SO:0000342	\N	"" []	SO:0000946	"A region specifically recognised by a recombinase, which inserts or removes another region marked by a distinct cognate integration/excision site." [SO:as]	1073049	\N	\N	sequence	2	SO	specific_recombination_site	integration_excision_site
SO:0000669	SO:0000299	\N	"" []	SO:0000946	"A region specifically recognised by a recombinase, which inserts or removes another region marked by a distinct cognate integration/excision site." [SO:as]	1904098	\N	\N	sequence	3	SO	sequence_rearrangement_feature	integration_excision_site
SO:0000298	SO:0000669	\N	"" []	SO:0000946	"A region specifically recognised by a recombinase, which inserts or removes another region marked by a distinct cognate integration/excision site." [SO:as]	2928536	\N	\N	sequence	4	SO	recombination_feature	integration_excision_site
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000946	"A region specifically recognised by a recombinase, which inserts or removes another region marked by a distinct cognate integration/excision site." [SO:as]	4001809	\N	SOFA	sequence	5	SO	biological_region	integration_excision_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000946	"A region specifically recognised by a recombinase, which inserts or removes another region marked by a distinct cognate integration/excision site." [SO:as]	4966256	SOFA	SOFA	sequence	6	SO	region	integration_excision_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000946	"A region specifically recognised by a recombinase, which inserts or removes another region marked by a distinct cognate integration/excision site." [SO:as]	5741103	SOFA	SOFA	sequence	7	SO	sequence_feature	integration_excision_site
SO:0000947	\N	\N	"A region specifically recognized by a recombinase, which separates a physically contiguous circle of DNA into two physically separate circles." [SO:as]	SO:0000947	"A region specifically recognized by a recombinase, which separates a physically contiguous circle of DNA into two physically separate circles." [SO:as]	45841	\N	\N	sequence	0	SO	resolution_site	resolution_site
SO:0000342	SO:0000947	\N	"" []	SO:0000947	"A region specifically recognized by a recombinase, which separates a physically contiguous circle of DNA into two physically separate circles." [SO:as]	490536	\N	\N	sequence	1	SO	site_specific_recombination_target_region	resolution_site
SO:0000299	SO:0000342	\N	"" []	SO:0000947	"A region specifically recognized by a recombinase, which separates a physically contiguous circle of DNA into two physically separate circles." [SO:as]	1073050	\N	\N	sequence	2	SO	specific_recombination_site	resolution_site
SO:0000669	SO:0000299	\N	"" []	SO:0000947	"A region specifically recognized by a recombinase, which separates a physically contiguous circle of DNA into two physically separate circles." [SO:as]	1904099	\N	\N	sequence	3	SO	sequence_rearrangement_feature	resolution_site
SO:0000298	SO:0000669	\N	"" []	SO:0000947	"A region specifically recognized by a recombinase, which separates a physically contiguous circle of DNA into two physically separate circles." [SO:as]	2928537	\N	\N	sequence	4	SO	recombination_feature	resolution_site
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000947	"A region specifically recognized by a recombinase, which separates a physically contiguous circle of DNA into two physically separate circles." [SO:as]	4001810	\N	SOFA	sequence	5	SO	biological_region	resolution_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000947	"A region specifically recognized by a recombinase, which separates a physically contiguous circle of DNA into two physically separate circles." [SO:as]	4966257	SOFA	SOFA	sequence	6	SO	region	resolution_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000947	"A region specifically recognized by a recombinase, which separates a physically contiguous circle of DNA into two physically separate circles." [SO:as]	5741104	SOFA	SOFA	sequence	7	SO	sequence_feature	resolution_site
SO:0000948	\N	\N	"A region specifically recognised by a recombinase, which inverts the region flanked by a pair of sites." [SO:ma]	SO:0000948	"A region specifically recognised by a recombinase, which inverts the region flanked by a pair of sites." [SO:ma]	45842	\N	\N	sequence	0	SO	inversion_site	inversion_site
SO:0000342	SO:0000948	\N	"" []	SO:0000948	"A region specifically recognised by a recombinase, which inverts the region flanked by a pair of sites." [SO:ma]	490537	\N	\N	sequence	1	SO	site_specific_recombination_target_region	inversion_site
SO:0000299	SO:0000342	\N	"" []	SO:0000948	"A region specifically recognised by a recombinase, which inverts the region flanked by a pair of sites." [SO:ma]	1073051	\N	\N	sequence	2	SO	specific_recombination_site	inversion_site
SO:0000669	SO:0000299	\N	"" []	SO:0000948	"A region specifically recognised by a recombinase, which inverts the region flanked by a pair of sites." [SO:ma]	1904100	\N	\N	sequence	3	SO	sequence_rearrangement_feature	inversion_site
SO:0000298	SO:0000669	\N	"" []	SO:0000948	"A region specifically recognised by a recombinase, which inverts the region flanked by a pair of sites." [SO:ma]	2928538	\N	\N	sequence	4	SO	recombination_feature	inversion_site
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000948	"A region specifically recognised by a recombinase, which inverts the region flanked by a pair of sites." [SO:ma]	4001811	\N	SOFA	sequence	5	SO	biological_region	inversion_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000948	"A region specifically recognised by a recombinase, which inverts the region flanked by a pair of sites." [SO:ma]	4966258	SOFA	SOFA	sequence	6	SO	region	inversion_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000948	"A region specifically recognised by a recombinase, which inverts the region flanked by a pair of sites." [SO:ma]	5741105	SOFA	SOFA	sequence	7	SO	sequence_feature	inversion_site
SO:0000949	\N	\N	"A site at which replicated bacterial circular chromosomes are decatenated by site specific resolvase." [SO:as]	SO:0000949	"A site at which replicated bacterial circular chromosomes are decatenated by site specific resolvase." [SO:as]	45843	\N	\N	sequence	0	SO	dif_site	dif_site
SO:0000947	SO:0000949	\N	"A region specifically recognized by a recombinase, which separates a physically contiguous circle of DNA into two physically separate circles." [SO:as]	SO:0000949	"A site at which replicated bacterial circular chromosomes are decatenated by site specific resolvase." [SO:as]	490538	\N	\N	sequence	1	SO	resolution_site	dif_site
SO:0000342	SO:0000947	\N	"" []	SO:0000949	"A site at which replicated bacterial circular chromosomes are decatenated by site specific resolvase." [SO:as]	1073052	\N	\N	sequence	2	SO	site_specific_recombination_target_region	dif_site
SO:0000299	SO:0000342	\N	"" []	SO:0000949	"A site at which replicated bacterial circular chromosomes are decatenated by site specific resolvase." [SO:as]	1904101	\N	\N	sequence	3	SO	specific_recombination_site	dif_site
SO:0000669	SO:0000299	\N	"" []	SO:0000949	"A site at which replicated bacterial circular chromosomes are decatenated by site specific resolvase." [SO:as]	2928539	\N	\N	sequence	4	SO	sequence_rearrangement_feature	dif_site
SO:0000298	SO:0000669	\N	"" []	SO:0000949	"A site at which replicated bacterial circular chromosomes are decatenated by site specific resolvase." [SO:as]	4001812	\N	\N	sequence	5	SO	recombination_feature	dif_site
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000949	"A site at which replicated bacterial circular chromosomes are decatenated by site specific resolvase." [SO:as]	4966259	\N	SOFA	sequence	6	SO	biological_region	dif_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000949	"A site at which replicated bacterial circular chromosomes are decatenated by site specific resolvase." [SO:as]	5741106	SOFA	SOFA	sequence	7	SO	region	dif_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000949	"A site at which replicated bacterial circular chromosomes are decatenated by site specific resolvase." [SO:as]	6310996	SOFA	SOFA	sequence	8	SO	sequence_feature	dif_site
SO:0000950	\N	\N	"An attC site is a sequence required for the integration of a DNA of an integron." [SO:as]	SO:0000950	"An attC site is a sequence required for the integration of a DNA of an integron." [SO:as]	45844	\N	\N	sequence	0	SO	attC_site	attC_site
SO:0000365	SO:0000950	\N	"A region encoding an integrase which acts at a site adjacent to it (attI_site) to insert DNA which must include but is not limited to an attC_site." [SO:as]	SO:0000950	"An attC site is a sequence required for the integration of a DNA of an integron." [SO:as]	490539	\N	\N	sequence	1	SO	integron	attC_site
SO:0000946	SO:0000950	\N	"A region specifically recognised by a recombinase, which inserts or removes another region marked by a distinct cognate integration/excision site." [SO:as]	SO:0000950	"An attC site is a sequence required for the integration of a DNA of an integron." [SO:as]	490540	\N	\N	sequence	1	SO	integration_excision_site	attC_site
SO:0001039	SO:0000365	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000950	"An attC site is a sequence required for the integration of a DNA of an integron." [SO:as]	1073053	\N	SOFA	sequence	2	SO	integrated_mobile_genetic_element	attC_site
SO:0000342	SO:0000946	\N	"" []	SO:0000950	"An attC site is a sequence required for the integration of a DNA of an integron." [SO:as]	1073054	\N	\N	sequence	2	SO	site_specific_recombination_target_region	attC_site
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000950	"An attC site is a sequence required for the integration of a DNA of an integron." [SO:as]	1904102	SOFA	SOFA	sequence	3	SO	mobile_genetic_element	attC_site
SO:0000299	SO:0000342	\N	"" []	SO:0000950	"An attC site is a sequence required for the integration of a DNA of an integron." [SO:as]	1904103	\N	\N	sequence	3	SO	specific_recombination_site	attC_site
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000950	"An attC site is a sequence required for the integration of a DNA of an integron." [SO:as]	2928540	SOFA	SOFA	sequence	4	SO	biological_region	attC_site
SO:0000669	SO:0000299	\N	"" []	SO:0000950	"An attC site is a sequence required for the integration of a DNA of an integron." [SO:as]	2928541	\N	\N	sequence	4	SO	sequence_rearrangement_feature	attC_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000950	"An attC site is a sequence required for the integration of a DNA of an integron." [SO:as]	5741107	SOFA	SOFA	sequence	7	SO	region	attC_site
SO:0000298	SO:0000669	\N	"" []	SO:0000950	"An attC site is a sequence required for the integration of a DNA of an integron." [SO:as]	4001814	\N	\N	sequence	5	SO	recombination_feature	attC_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000950	"An attC site is a sequence required for the integration of a DNA of an integron." [SO:as]	5996412	SOFA	SOFA	sequence	8	SO	sequence_feature	attC_site
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000950	"An attC site is a sequence required for the integration of a DNA of an integron." [SO:as]	4966261	\N	SOFA	sequence	6	SO	biological_region	attC_site
SO:0000951	\N	\N	"" []	SO:0000951	"" []	45845	\N	\N	sequence	0	SO	eukaryotic_terminator	eukaryotic_terminator
SO:0000141	SO:0000951	\N	"The sequence of DNA located either at the end of the transcript that causes RNA polymerase to terminate transcription." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000951	"" []	490541	\N	SOFA	sequence	1	SO	terminator	eukaryotic_terminator
SO:0000673	SO:0000141	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000951	"" []	1073055	SOFA	SOFA	sequence	2	SO	transcript	eukaryotic_terminator
SO:0001679	SO:0000141	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000951	"" []	1073056	SOFA	SOFA	sequence	2	SO	transcription_regulatory_region	eukaryotic_terminator
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000951	"" []	1904104	SOFA	SOFA	sequence	3	SO	gene_member_region	eukaryotic_terminator
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000951	"" []	1904105	SOFA	SOFA	sequence	3	SO	regulatory_region	eukaryotic_terminator
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000951	"" []	4001816	SOFA	SOFA	sequence	5	SO	biological_region	eukaryotic_terminator
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0000951	"" []	2928543	SOFA	SOFA	sequence	4	SO	gene_member_region	eukaryotic_terminator
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000951	"" []	4385762	SOFA	SOFA	sequence	6	SO	region	eukaryotic_terminator
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000951	"" []	5407423	SOFA	SOFA	sequence	7	SO	sequence_feature	eukaryotic_terminator
SO:0000952	\N	\N	"An origin of vegetative replication in plasmids and phages." [SO:as]	SO:0000952	"An origin of vegetative replication in plasmids and phages." [SO:as]	45846	\N	\N	sequence	0	SO	oriV	oriV
SO:0000296	SO:0000952	\N	"The origin of replication; starting site for duplication of a nucleic acid molecule to give two identical copies." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000952	"An origin of vegetative replication in plasmids and phages." [SO:as]	490542	\N	SOFA	sequence	1	SO	origin_of_replication	oriV
SO:0001235	SO:0000296	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000952	"An origin of vegetative replication in plasmids and phages." [SO:as]	1073057	SOFA	SOFA	sequence	2	SO	replicon	oriV
SO:0001411	SO:0000296	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000952	"An origin of vegetative replication in plasmids and phages." [SO:as]	1073058	SOFA	SOFA	sequence	2	SO	biological_region	oriV
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000952	"An origin of vegetative replication in plasmids and phages." [SO:as]	1904106	SOFA	SOFA	sequence	3	SO	biological_region	oriV
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000952	"An origin of vegetative replication in plasmids and phages." [SO:as]	2928544	SOFA	SOFA	sequence	4	SO	region	oriV
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000952	"An origin of vegetative replication in plasmids and phages." [SO:as]	3173911	SOFA	SOFA	sequence	5	SO	sequence_feature	oriV
SO:0000953	\N	\N	"An origin of bacterial chromosome replication." [SO:as]	SO:0000953	"An origin of bacterial chromosome replication." [SO:as]	45847	\N	\N	sequence	0	SO	oriC	oriC
SO:0000296	SO:0000953	\N	"The origin of replication; starting site for duplication of a nucleic acid molecule to give two identical copies." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000953	"An origin of bacterial chromosome replication." [SO:as]	490543	\N	SOFA	sequence	1	SO	origin_of_replication	oriC
SO:0001235	SO:0000296	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000953	"An origin of bacterial chromosome replication." [SO:as]	1073059	SOFA	SOFA	sequence	2	SO	replicon	oriC
SO:0001411	SO:0000296	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000953	"An origin of bacterial chromosome replication." [SO:as]	1073060	SOFA	SOFA	sequence	2	SO	biological_region	oriC
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000953	"An origin of bacterial chromosome replication." [SO:as]	1904108	SOFA	SOFA	sequence	3	SO	biological_region	oriC
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000953	"An origin of bacterial chromosome replication." [SO:as]	2928546	SOFA	SOFA	sequence	4	SO	region	oriC
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000953	"An origin of bacterial chromosome replication." [SO:as]	3173912	SOFA	SOFA	sequence	5	SO	sequence_feature	oriC
SO:0000954	\N	\N	"Structural unit composed of a self-replicating, DNA molecule." [SO:ma]	SO:0000954	"Structural unit composed of a self-replicating, DNA molecule." [SO:ma]	45848	\N	\N	sequence	0	SO	DNA_chromosome	DNA_chromosome
SO:0000340	SO:0000954	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000954	"Structural unit composed of a self-replicating, DNA molecule." [SO:ma]	490544	\N	SOFA	sequence	1	SO	chromosome	DNA_chromosome
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000954	"Structural unit composed of a self-replicating, DNA molecule." [SO:ma]	1073061	SOFA	SOFA	sequence	2	SO	replicon	DNA_chromosome
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000954	"Structural unit composed of a self-replicating, DNA molecule." [SO:ma]	1904110	SOFA	SOFA	sequence	3	SO	biological_region	DNA_chromosome
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000954	"Structural unit composed of a self-replicating, DNA molecule." [SO:ma]	2928548	SOFA	SOFA	sequence	4	SO	region	DNA_chromosome
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000954	"Structural unit composed of a self-replicating, DNA molecule." [SO:ma]	4001817	SOFA	SOFA	sequence	5	SO	sequence_feature	DNA_chromosome
SO:0000955	\N	\N	"Structural unit composed of a self-replicating, double-stranded DNA molecule." [SO:ma]	SO:0000955	"Structural unit composed of a self-replicating, double-stranded DNA molecule." [SO:ma]	45849	\N	\N	sequence	0	SO	double_stranded_DNA_chromosome	double_stranded_DNA_chromosome
SO:0000954	SO:0000955	\N	"Structural unit composed of a self-replicating, DNA molecule." [SO:ma]	SO:0000955	"Structural unit composed of a self-replicating, double-stranded DNA molecule." [SO:ma]	490545	\N	\N	sequence	1	SO	DNA_chromosome	double_stranded_DNA_chromosome
SO:0000340	SO:0000954	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000955	"Structural unit composed of a self-replicating, double-stranded DNA molecule." [SO:ma]	1073062	\N	SOFA	sequence	2	SO	chromosome	double_stranded_DNA_chromosome
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000955	"Structural unit composed of a self-replicating, double-stranded DNA molecule." [SO:ma]	1904111	SOFA	SOFA	sequence	3	SO	replicon	double_stranded_DNA_chromosome
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000955	"Structural unit composed of a self-replicating, double-stranded DNA molecule." [SO:ma]	2928549	SOFA	SOFA	sequence	4	SO	biological_region	double_stranded_DNA_chromosome
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000955	"Structural unit composed of a self-replicating, double-stranded DNA molecule." [SO:ma]	4001818	SOFA	SOFA	sequence	5	SO	region	double_stranded_DNA_chromosome
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000955	"Structural unit composed of a self-replicating, double-stranded DNA molecule." [SO:ma]	4966263	SOFA	SOFA	sequence	6	SO	sequence_feature	double_stranded_DNA_chromosome
SO:0000956	\N	\N	"Structural unit composed of a self-replicating, single-stranded DNA molecule." [SO:ma]	SO:0000956	"Structural unit composed of a self-replicating, single-stranded DNA molecule." [SO:ma]	45850	\N	\N	sequence	0	SO	single_stranded_DNA_chromosome	single_stranded_DNA_chromosome
SO:0000954	SO:0000956	\N	"Structural unit composed of a self-replicating, DNA molecule." [SO:ma]	SO:0000956	"Structural unit composed of a self-replicating, single-stranded DNA molecule." [SO:ma]	490546	\N	\N	sequence	1	SO	DNA_chromosome	single_stranded_DNA_chromosome
SO:0000340	SO:0000954	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000956	"Structural unit composed of a self-replicating, single-stranded DNA molecule." [SO:ma]	1073063	\N	SOFA	sequence	2	SO	chromosome	single_stranded_DNA_chromosome
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000956	"Structural unit composed of a self-replicating, single-stranded DNA molecule." [SO:ma]	1904112	SOFA	SOFA	sequence	3	SO	replicon	single_stranded_DNA_chromosome
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000956	"Structural unit composed of a self-replicating, single-stranded DNA molecule." [SO:ma]	2928550	SOFA	SOFA	sequence	4	SO	biological_region	single_stranded_DNA_chromosome
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000956	"Structural unit composed of a self-replicating, single-stranded DNA molecule." [SO:ma]	4001819	SOFA	SOFA	sequence	5	SO	region	single_stranded_DNA_chromosome
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000956	"Structural unit composed of a self-replicating, single-stranded DNA molecule." [SO:ma]	4966264	SOFA	SOFA	sequence	6	SO	sequence_feature	single_stranded_DNA_chromosome
SO:0000957	\N	\N	"Structural unit composed of a self-replicating, double-stranded, linear DNA molecule." [SO:ma]	SO:0000957	"Structural unit composed of a self-replicating, double-stranded, linear DNA molecule." [SO:ma]	45851	\N	\N	sequence	0	SO	linear_double_stranded_DNA_chromosome	linear_double_stranded_DNA_chromosome
SO:0000955	SO:0000957	\N	"Structural unit composed of a self-replicating, double-stranded DNA molecule." [SO:ma]	SO:0000957	"Structural unit composed of a self-replicating, double-stranded, linear DNA molecule." [SO:ma]	490547	\N	\N	sequence	1	SO	double_stranded_DNA_chromosome	linear_double_stranded_DNA_chromosome
SO:0000954	SO:0000955	\N	"Structural unit composed of a self-replicating, DNA molecule." [SO:ma]	SO:0000957	"Structural unit composed of a self-replicating, double-stranded, linear DNA molecule." [SO:ma]	1073064	\N	\N	sequence	2	SO	DNA_chromosome	linear_double_stranded_DNA_chromosome
SO:0000340	SO:0000954	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000957	"Structural unit composed of a self-replicating, double-stranded, linear DNA molecule." [SO:ma]	1904113	\N	SOFA	sequence	3	SO	chromosome	linear_double_stranded_DNA_chromosome
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000957	"Structural unit composed of a self-replicating, double-stranded, linear DNA molecule." [SO:ma]	2928551	SOFA	SOFA	sequence	4	SO	replicon	linear_double_stranded_DNA_chromosome
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000957	"Structural unit composed of a self-replicating, double-stranded, linear DNA molecule." [SO:ma]	4001820	SOFA	SOFA	sequence	5	SO	biological_region	linear_double_stranded_DNA_chromosome
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000957	"Structural unit composed of a self-replicating, double-stranded, linear DNA molecule." [SO:ma]	4966265	SOFA	SOFA	sequence	6	SO	region	linear_double_stranded_DNA_chromosome
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000957	"Structural unit composed of a self-replicating, double-stranded, linear DNA molecule." [SO:ma]	5741108	SOFA	SOFA	sequence	7	SO	sequence_feature	linear_double_stranded_DNA_chromosome
SO:0000958	\N	\N	"Structural unit composed of a self-replicating, double-stranded, circular DNA molecule." [SO:ma]	SO:0000958	"Structural unit composed of a self-replicating, double-stranded, circular DNA molecule." [SO:ma]	45852	\N	\N	sequence	0	SO	circular_double_stranded_DNA_chromosome	circular_double_stranded_DNA_chromosome
SO:0000955	SO:0000958	\N	"Structural unit composed of a self-replicating, double-stranded DNA molecule." [SO:ma]	SO:0000958	"Structural unit composed of a self-replicating, double-stranded, circular DNA molecule." [SO:ma]	490548	\N	\N	sequence	1	SO	double_stranded_DNA_chromosome	circular_double_stranded_DNA_chromosome
SO:0000954	SO:0000955	\N	"Structural unit composed of a self-replicating, DNA molecule." [SO:ma]	SO:0000958	"Structural unit composed of a self-replicating, double-stranded, circular DNA molecule." [SO:ma]	1073065	\N	\N	sequence	2	SO	DNA_chromosome	circular_double_stranded_DNA_chromosome
SO:0000340	SO:0000954	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000958	"Structural unit composed of a self-replicating, double-stranded, circular DNA molecule." [SO:ma]	1904114	\N	SOFA	sequence	3	SO	chromosome	circular_double_stranded_DNA_chromosome
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000958	"Structural unit composed of a self-replicating, double-stranded, circular DNA molecule." [SO:ma]	2928552	SOFA	SOFA	sequence	4	SO	replicon	circular_double_stranded_DNA_chromosome
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000958	"Structural unit composed of a self-replicating, double-stranded, circular DNA molecule." [SO:ma]	4001821	SOFA	SOFA	sequence	5	SO	biological_region	circular_double_stranded_DNA_chromosome
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000958	"Structural unit composed of a self-replicating, double-stranded, circular DNA molecule." [SO:ma]	4966266	SOFA	SOFA	sequence	6	SO	region	circular_double_stranded_DNA_chromosome
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000958	"Structural unit composed of a self-replicating, double-stranded, circular DNA molecule." [SO:ma]	5741109	SOFA	SOFA	sequence	7	SO	sequence_feature	circular_double_stranded_DNA_chromosome
SO:0000959	\N	\N	"Structural unit composed of a self-replicating, single-stranded, linear DNA molecule." [SO:ma]	SO:0000959	"Structural unit composed of a self-replicating, single-stranded, linear DNA molecule." [SO:ma]	45853	\N	\N	sequence	0	SO	linear_single_stranded_DNA_chromosome	linear_single_stranded_DNA_chromosome
SO:0000956	SO:0000959	\N	"Structural unit composed of a self-replicating, single-stranded DNA molecule." [SO:ma]	SO:0000959	"Structural unit composed of a self-replicating, single-stranded, linear DNA molecule." [SO:ma]	490549	\N	\N	sequence	1	SO	single_stranded_DNA_chromosome	linear_single_stranded_DNA_chromosome
SO:0000954	SO:0000956	\N	"Structural unit composed of a self-replicating, DNA molecule." [SO:ma]	SO:0000959	"Structural unit composed of a self-replicating, single-stranded, linear DNA molecule." [SO:ma]	1073066	\N	\N	sequence	2	SO	DNA_chromosome	linear_single_stranded_DNA_chromosome
SO:0000340	SO:0000954	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000959	"Structural unit composed of a self-replicating, single-stranded, linear DNA molecule." [SO:ma]	1904115	\N	SOFA	sequence	3	SO	chromosome	linear_single_stranded_DNA_chromosome
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000959	"Structural unit composed of a self-replicating, single-stranded, linear DNA molecule." [SO:ma]	2928553	SOFA	SOFA	sequence	4	SO	replicon	linear_single_stranded_DNA_chromosome
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000959	"Structural unit composed of a self-replicating, single-stranded, linear DNA molecule." [SO:ma]	4001822	SOFA	SOFA	sequence	5	SO	biological_region	linear_single_stranded_DNA_chromosome
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000959	"Structural unit composed of a self-replicating, single-stranded, linear DNA molecule." [SO:ma]	4966267	SOFA	SOFA	sequence	6	SO	region	linear_single_stranded_DNA_chromosome
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000959	"Structural unit composed of a self-replicating, single-stranded, linear DNA molecule." [SO:ma]	5741110	SOFA	SOFA	sequence	7	SO	sequence_feature	linear_single_stranded_DNA_chromosome
SO:0000960	\N	\N	"Structural unit composed of a self-replicating, single-stranded, circular DNA molecule." [SO:ma]	SO:0000960	"Structural unit composed of a self-replicating, single-stranded, circular DNA molecule." [SO:ma]	45854	\N	\N	sequence	0	SO	circular_single_stranded_DNA_chromosome	circular_single_stranded_DNA_chromosome
SO:0000956	SO:0000960	\N	"Structural unit composed of a self-replicating, single-stranded DNA molecule." [SO:ma]	SO:0000960	"Structural unit composed of a self-replicating, single-stranded, circular DNA molecule." [SO:ma]	490550	\N	\N	sequence	1	SO	single_stranded_DNA_chromosome	circular_single_stranded_DNA_chromosome
SO:0000954	SO:0000956	\N	"Structural unit composed of a self-replicating, DNA molecule." [SO:ma]	SO:0000960	"Structural unit composed of a self-replicating, single-stranded, circular DNA molecule." [SO:ma]	1073067	\N	\N	sequence	2	SO	DNA_chromosome	circular_single_stranded_DNA_chromosome
SO:0000340	SO:0000954	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000960	"Structural unit composed of a self-replicating, single-stranded, circular DNA molecule." [SO:ma]	1904116	\N	SOFA	sequence	3	SO	chromosome	circular_single_stranded_DNA_chromosome
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000960	"Structural unit composed of a self-replicating, single-stranded, circular DNA molecule." [SO:ma]	2928554	SOFA	SOFA	sequence	4	SO	replicon	circular_single_stranded_DNA_chromosome
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000960	"Structural unit composed of a self-replicating, single-stranded, circular DNA molecule." [SO:ma]	4001823	SOFA	SOFA	sequence	5	SO	biological_region	circular_single_stranded_DNA_chromosome
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000960	"Structural unit composed of a self-replicating, single-stranded, circular DNA molecule." [SO:ma]	4966268	SOFA	SOFA	sequence	6	SO	region	circular_single_stranded_DNA_chromosome
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000960	"Structural unit composed of a self-replicating, single-stranded, circular DNA molecule." [SO:ma]	5741111	SOFA	SOFA	sequence	7	SO	sequence_feature	circular_single_stranded_DNA_chromosome
SO:0000961	\N	\N	"Structural unit composed of a self-replicating, RNA molecule." [SO:ma]	SO:0000961	"Structural unit composed of a self-replicating, RNA molecule." [SO:ma]	45855	\N	\N	sequence	0	SO	RNA_chromosome	RNA_chromosome
SO:0000340	SO:0000961	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000961	"Structural unit composed of a self-replicating, RNA molecule." [SO:ma]	490551	\N	SOFA	sequence	1	SO	chromosome	RNA_chromosome
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000961	"Structural unit composed of a self-replicating, RNA molecule." [SO:ma]	1073068	SOFA	SOFA	sequence	2	SO	replicon	RNA_chromosome
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000961	"Structural unit composed of a self-replicating, RNA molecule." [SO:ma]	1904117	SOFA	SOFA	sequence	3	SO	biological_region	RNA_chromosome
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000961	"Structural unit composed of a self-replicating, RNA molecule." [SO:ma]	2928555	SOFA	SOFA	sequence	4	SO	region	RNA_chromosome
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000961	"Structural unit composed of a self-replicating, RNA molecule." [SO:ma]	4001824	SOFA	SOFA	sequence	5	SO	sequence_feature	RNA_chromosome
SO:0000962	\N	\N	"Structural unit composed of a self-replicating, single-stranded RNA molecule." [SO:ma]	SO:0000962	"Structural unit composed of a self-replicating, single-stranded RNA molecule." [SO:ma]	45856	\N	\N	sequence	0	SO	single_stranded_RNA_chromosome	single_stranded_RNA_chromosome
SO:0000961	SO:0000962	\N	"Structural unit composed of a self-replicating, RNA molecule." [SO:ma]	SO:0000962	"Structural unit composed of a self-replicating, single-stranded RNA molecule." [SO:ma]	490552	\N	\N	sequence	1	SO	RNA_chromosome	single_stranded_RNA_chromosome
SO:0000340	SO:0000961	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000962	"Structural unit composed of a self-replicating, single-stranded RNA molecule." [SO:ma]	1073069	\N	SOFA	sequence	2	SO	chromosome	single_stranded_RNA_chromosome
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000962	"Structural unit composed of a self-replicating, single-stranded RNA molecule." [SO:ma]	1904118	SOFA	SOFA	sequence	3	SO	replicon	single_stranded_RNA_chromosome
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000962	"Structural unit composed of a self-replicating, single-stranded RNA molecule." [SO:ma]	2928556	SOFA	SOFA	sequence	4	SO	biological_region	single_stranded_RNA_chromosome
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000962	"Structural unit composed of a self-replicating, single-stranded RNA molecule." [SO:ma]	4001825	SOFA	SOFA	sequence	5	SO	region	single_stranded_RNA_chromosome
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000962	"Structural unit composed of a self-replicating, single-stranded RNA molecule." [SO:ma]	4966269	SOFA	SOFA	sequence	6	SO	sequence_feature	single_stranded_RNA_chromosome
SO:0000963	\N	\N	"Structural unit composed of a self-replicating, single-stranded, linear RNA molecule." [SO:ma]	SO:0000963	"Structural unit composed of a self-replicating, single-stranded, linear RNA molecule." [SO:ma]	45857	\N	\N	sequence	0	SO	linear_single_stranded_RNA_chromosome	linear_single_stranded_RNA_chromosome
SO:0000962	SO:0000963	\N	"Structural unit composed of a self-replicating, single-stranded RNA molecule." [SO:ma]	SO:0000963	"Structural unit composed of a self-replicating, single-stranded, linear RNA molecule." [SO:ma]	490553	\N	\N	sequence	1	SO	single_stranded_RNA_chromosome	linear_single_stranded_RNA_chromosome
SO:0000961	SO:0000962	\N	"Structural unit composed of a self-replicating, RNA molecule." [SO:ma]	SO:0000963	"Structural unit composed of a self-replicating, single-stranded, linear RNA molecule." [SO:ma]	1073070	\N	\N	sequence	2	SO	RNA_chromosome	linear_single_stranded_RNA_chromosome
SO:0000340	SO:0000961	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000963	"Structural unit composed of a self-replicating, single-stranded, linear RNA molecule." [SO:ma]	1904119	\N	SOFA	sequence	3	SO	chromosome	linear_single_stranded_RNA_chromosome
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000963	"Structural unit composed of a self-replicating, single-stranded, linear RNA molecule." [SO:ma]	2928557	SOFA	SOFA	sequence	4	SO	replicon	linear_single_stranded_RNA_chromosome
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000963	"Structural unit composed of a self-replicating, single-stranded, linear RNA molecule." [SO:ma]	4001826	SOFA	SOFA	sequence	5	SO	biological_region	linear_single_stranded_RNA_chromosome
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000963	"Structural unit composed of a self-replicating, single-stranded, linear RNA molecule." [SO:ma]	4966270	SOFA	SOFA	sequence	6	SO	region	linear_single_stranded_RNA_chromosome
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000963	"Structural unit composed of a self-replicating, single-stranded, linear RNA molecule." [SO:ma]	5741112	SOFA	SOFA	sequence	7	SO	sequence_feature	linear_single_stranded_RNA_chromosome
SO:0000964	\N	\N	"Structural unit composed of a self-replicating, double-stranded, linear RNA molecule." [SO:ma]	SO:0000964	"Structural unit composed of a self-replicating, double-stranded, linear RNA molecule." [SO:ma]	45858	\N	\N	sequence	0	SO	linear_double_stranded_RNA_chromosome	linear_double_stranded_RNA_chromosome
SO:0000965	SO:0000964	\N	"Structural unit composed of a self-replicating, double-stranded RNA molecule." [SO:ma]	SO:0000964	"Structural unit composed of a self-replicating, double-stranded, linear RNA molecule." [SO:ma]	490554	\N	\N	sequence	1	SO	double_stranded_RNA_chromosome	linear_double_stranded_RNA_chromosome
SO:0000961	SO:0000965	\N	"Structural unit composed of a self-replicating, RNA molecule." [SO:ma]	SO:0000964	"Structural unit composed of a self-replicating, double-stranded, linear RNA molecule." [SO:ma]	1073071	\N	\N	sequence	2	SO	RNA_chromosome	linear_double_stranded_RNA_chromosome
SO:0000340	SO:0000961	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000964	"Structural unit composed of a self-replicating, double-stranded, linear RNA molecule." [SO:ma]	1904120	\N	SOFA	sequence	3	SO	chromosome	linear_double_stranded_RNA_chromosome
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000964	"Structural unit composed of a self-replicating, double-stranded, linear RNA molecule." [SO:ma]	2928558	SOFA	SOFA	sequence	4	SO	replicon	linear_double_stranded_RNA_chromosome
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000964	"Structural unit composed of a self-replicating, double-stranded, linear RNA molecule." [SO:ma]	4001827	SOFA	SOFA	sequence	5	SO	biological_region	linear_double_stranded_RNA_chromosome
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000964	"Structural unit composed of a self-replicating, double-stranded, linear RNA molecule." [SO:ma]	4966271	SOFA	SOFA	sequence	6	SO	region	linear_double_stranded_RNA_chromosome
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000964	"Structural unit composed of a self-replicating, double-stranded, linear RNA molecule." [SO:ma]	5741113	SOFA	SOFA	sequence	7	SO	sequence_feature	linear_double_stranded_RNA_chromosome
SO:0000965	\N	\N	"Structural unit composed of a self-replicating, double-stranded RNA molecule." [SO:ma]	SO:0000965	"Structural unit composed of a self-replicating, double-stranded RNA molecule." [SO:ma]	45859	\N	\N	sequence	0	SO	double_stranded_RNA_chromosome	double_stranded_RNA_chromosome
SO:0000961	SO:0000965	\N	"Structural unit composed of a self-replicating, RNA molecule." [SO:ma]	SO:0000965	"Structural unit composed of a self-replicating, double-stranded RNA molecule." [SO:ma]	490555	\N	\N	sequence	1	SO	RNA_chromosome	double_stranded_RNA_chromosome
SO:0000340	SO:0000961	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000965	"Structural unit composed of a self-replicating, double-stranded RNA molecule." [SO:ma]	1073072	\N	SOFA	sequence	2	SO	chromosome	double_stranded_RNA_chromosome
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000965	"Structural unit composed of a self-replicating, double-stranded RNA molecule." [SO:ma]	1904121	SOFA	SOFA	sequence	3	SO	replicon	double_stranded_RNA_chromosome
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000965	"Structural unit composed of a self-replicating, double-stranded RNA molecule." [SO:ma]	2928559	SOFA	SOFA	sequence	4	SO	biological_region	double_stranded_RNA_chromosome
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000965	"Structural unit composed of a self-replicating, double-stranded RNA molecule." [SO:ma]	4001828	SOFA	SOFA	sequence	5	SO	region	double_stranded_RNA_chromosome
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000965	"Structural unit composed of a self-replicating, double-stranded RNA molecule." [SO:ma]	4966272	SOFA	SOFA	sequence	6	SO	sequence_feature	double_stranded_RNA_chromosome
SO:0000966	\N	\N	"Structural unit composed of a self-replicating, single-stranded, circular DNA molecule." [SO:ma]	SO:0000966	"Structural unit composed of a self-replicating, single-stranded, circular DNA molecule." [SO:ma]	45860	\N	\N	sequence	0	SO	circular_single_stranded_RNA_chromosome	circular_single_stranded_RNA_chromosome
SO:0000962	SO:0000966	\N	"Structural unit composed of a self-replicating, single-stranded RNA molecule." [SO:ma]	SO:0000966	"Structural unit composed of a self-replicating, single-stranded, circular DNA molecule." [SO:ma]	490556	\N	\N	sequence	1	SO	single_stranded_RNA_chromosome	circular_single_stranded_RNA_chromosome
SO:0000961	SO:0000962	\N	"Structural unit composed of a self-replicating, RNA molecule." [SO:ma]	SO:0000966	"Structural unit composed of a self-replicating, single-stranded, circular DNA molecule." [SO:ma]	1073073	\N	\N	sequence	2	SO	RNA_chromosome	circular_single_stranded_RNA_chromosome
SO:0000340	SO:0000961	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000966	"Structural unit composed of a self-replicating, single-stranded, circular DNA molecule." [SO:ma]	1904122	\N	SOFA	sequence	3	SO	chromosome	circular_single_stranded_RNA_chromosome
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000966	"Structural unit composed of a self-replicating, single-stranded, circular DNA molecule." [SO:ma]	2928560	SOFA	SOFA	sequence	4	SO	replicon	circular_single_stranded_RNA_chromosome
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000966	"Structural unit composed of a self-replicating, single-stranded, circular DNA molecule." [SO:ma]	4001829	SOFA	SOFA	sequence	5	SO	biological_region	circular_single_stranded_RNA_chromosome
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000966	"Structural unit composed of a self-replicating, single-stranded, circular DNA molecule." [SO:ma]	4966273	SOFA	SOFA	sequence	6	SO	region	circular_single_stranded_RNA_chromosome
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000966	"Structural unit composed of a self-replicating, single-stranded, circular DNA molecule." [SO:ma]	5741114	SOFA	SOFA	sequence	7	SO	sequence_feature	circular_single_stranded_RNA_chromosome
SO:0000967	\N	\N	"Structural unit composed of a self-replicating, double-stranded, circular RNA molecule." [SO:ma]	SO:0000967	"Structural unit composed of a self-replicating, double-stranded, circular RNA molecule." [SO:ma]	45861	\N	\N	sequence	0	SO	circular_double_stranded_RNA_chromosome	circular_double_stranded_RNA_chromosome
SO:0000965	SO:0000967	\N	"Structural unit composed of a self-replicating, double-stranded RNA molecule." [SO:ma]	SO:0000967	"Structural unit composed of a self-replicating, double-stranded, circular RNA molecule." [SO:ma]	490557	\N	\N	sequence	1	SO	double_stranded_RNA_chromosome	circular_double_stranded_RNA_chromosome
SO:0000961	SO:0000965	\N	"Structural unit composed of a self-replicating, RNA molecule." [SO:ma]	SO:0000967	"Structural unit composed of a self-replicating, double-stranded, circular RNA molecule." [SO:ma]	1073074	\N	\N	sequence	2	SO	RNA_chromosome	circular_double_stranded_RNA_chromosome
SO:0000340	SO:0000961	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0000967	"Structural unit composed of a self-replicating, double-stranded, circular RNA molecule." [SO:ma]	1904123	\N	SOFA	sequence	3	SO	chromosome	circular_double_stranded_RNA_chromosome
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000967	"Structural unit composed of a self-replicating, double-stranded, circular RNA molecule." [SO:ma]	2928561	SOFA	SOFA	sequence	4	SO	replicon	circular_double_stranded_RNA_chromosome
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000967	"Structural unit composed of a self-replicating, double-stranded, circular RNA molecule." [SO:ma]	4001830	SOFA	SOFA	sequence	5	SO	biological_region	circular_double_stranded_RNA_chromosome
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000967	"Structural unit composed of a self-replicating, double-stranded, circular RNA molecule." [SO:ma]	4966274	SOFA	SOFA	sequence	6	SO	region	circular_double_stranded_RNA_chromosome
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000967	"Structural unit composed of a self-replicating, double-stranded, circular RNA molecule." [SO:ma]	5741115	SOFA	SOFA	sequence	7	SO	sequence_feature	circular_double_stranded_RNA_chromosome
SO:0000973	\N	\N	"A terminal_inverted_repeat_element that is bacterial and only encodes the functions required for its transposition between these inverted repeats." [SO:as]	SO:0000973	"A terminal_inverted_repeat_element that is bacterial and only encodes the functions required for its transposition between these inverted repeats." [SO:as]	45862	\N	\N	sequence	0	SO	insertion_sequence	insertion_sequence
SO:0000208	SO:0000973	\N	"A DNA transposable element defined as having termini with perfect, or nearly perfect short inverted repeats, generally 10 - 40 nucleotides long." [http://www.genetics.org/cgi/reprint/156/4/1983.pdf]	SO:0000973	"A terminal_inverted_repeat_element that is bacterial and only encodes the functions required for its transposition between these inverted repeats." [SO:as]	490558	\N	\N	sequence	1	SO	terminal_inverted_repeat_element	insertion_sequence
SO:0000182	SO:0000208	\N	"A transposon where the mechanism of transposition is via a DNA intermediate." [SO:ke]	SO:0000973	"A terminal_inverted_repeat_element that is bacterial and only encodes the functions required for its transposition between these inverted repeats." [SO:as]	1073075	\N	\N	sequence	2	SO	DNA_transposon	insertion_sequence
SO:0000101	SO:0000182	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0000973	"A terminal_inverted_repeat_element that is bacterial and only encodes the functions required for its transposition between these inverted repeats." [SO:as]	1904124	\N	SOFA	sequence	3	SO	transposable_element	insertion_sequence
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0000973	"A terminal_inverted_repeat_element that is bacterial and only encodes the functions required for its transposition between these inverted repeats." [SO:as]	2928562	SOFA	SOFA	sequence	4	SO	integrated_mobile_genetic_element	insertion_sequence
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0000973	"A terminal_inverted_repeat_element that is bacterial and only encodes the functions required for its transposition between these inverted repeats." [SO:as]	4001831	SOFA	SOFA	sequence	5	SO	mobile_genetic_element	insertion_sequence
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000973	"A terminal_inverted_repeat_element that is bacterial and only encodes the functions required for its transposition between these inverted repeats." [SO:as]	4966275	SOFA	SOFA	sequence	6	SO	biological_region	insertion_sequence
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000973	"A terminal_inverted_repeat_element that is bacterial and only encodes the functions required for its transposition between these inverted repeats." [SO:as]	5741116	SOFA	SOFA	sequence	7	SO	region	insertion_sequence
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000973	"A terminal_inverted_repeat_element that is bacterial and only encodes the functions required for its transposition between these inverted repeats." [SO:as]	6310997	SOFA	SOFA	sequence	8	SO	sequence_feature	insertion_sequence
SO:0000975	\N	\N	"" []	SO:0000975	"" []	45863	\N	\N	sequence	0	SO	minicircle_gene	minicircle_gene
SO:0000089	SO:0000975	\N	"A gene located in kinetoplast sequence." [SO:xp]	SO:0000975	"" []	490559	\N	\N	sequence	1	SO	kinetoplast_gene	minicircle_gene
SO:0000980	SO:0000975	\N	"A minicircle is a replicon, part of a kinetoplast, that encodes for guide RNAs." [PMID:8395055]	SO:0000975	"" []	490560	\N	\N	sequence	1	SO	minicircle	minicircle_gene
SO:0000088	SO:0000089	\N	"A gene located in mitochondrial sequence." [SO:xp]	SO:0000975	"" []	1073076	\N	\N	sequence	2	SO	mt_gene	minicircle_gene
SO:0001235	SO:0000980	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000975	"" []	1073077	\N	SOFA	sequence	2	SO	replicon	minicircle_gene
SO:0000704	SO:0000088	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000975	"" []	1904125	\N	SOFA	sequence	3	SO	gene	minicircle_gene
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000975	"" []	1904126	SOFA	SOFA	sequence	3	SO	biological_region	minicircle_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000975	"" []	2928563	SOFA	SOFA	sequence	4	SO	biological_region	minicircle_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000975	"" []	4001832	SOFA	SOFA	sequence	5	SO	region	minicircle_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000975	"" []	4385763	SOFA	SOFA	sequence	6	SO	sequence_feature	minicircle_gene
SO:0000976	\N	\N	"A feature_attribute describing a feature that is not manifest under normal conditions." [SO:ke]	SO:0000976	"A feature_attribute describing a feature that is not manifest under normal conditions." [SO:ke]	45864	\N	\N	sequence	0	SO	cryptic	cryptic
SO:0000733	SO:0000976	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000976	"A feature_attribute describing a feature that is not manifest under normal conditions." [SO:ke]	490561	\N	\N	sequence	1	SO	feature_attribute	cryptic
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000976	"A feature_attribute describing a feature that is not manifest under normal conditions." [SO:ke]	1073078	\N	\N	sequence	2	SO	sequence_attribute	cryptic
SO:0000977	\N	\N	"" []	SO:0000977	"" []	45865	\N	\N	sequence	0	SO	anchor_binding_site	anchor_binding_site
SO:0000833	SO:0000977	\N	"A region of a transcript." [SO:ke]	SO:0000977	"" []	490562	\N	SOFA	sequence	1	SO	transcript_region	anchor_binding_site
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000977	"" []	1073079	SOFA	SOFA	sequence	2	SO	transcript	anchor_binding_site
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000977	"" []	1073080	SOFA	SOFA	sequence	2	SO	biological_region	anchor_binding_site
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000977	"" []	1904127	SOFA	SOFA	sequence	3	SO	gene_member_region	anchor_binding_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000977	"" []	4001834	SOFA	SOFA	sequence	5	SO	region	anchor_binding_site
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000977	"" []	2928565	SOFA	SOFA	sequence	4	SO	biological_region	anchor_binding_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000977	"" []	4132321	SOFA	SOFA	sequence	6	SO	sequence_feature	anchor_binding_site
SO:0000978	\N	\N	"A region of a guide_RNA that specifies the insertions and deletions of bases in the editing of a target mRNA." [SO:jk]	SO:0000978	"A region of a guide_RNA that specifies the insertions and deletions of bases in the editing of a target mRNA." [SO:jk]	45866	\N	\N	sequence	0	SO	template_region	template_region
SO:0000930	SO:0000978	\N	"A region of guide RNA." [SO:ma]	SO:0000978	"A region of a guide_RNA that specifies the insertions and deletions of bases in the editing of a target mRNA." [SO:jk]	490563	\N	\N	sequence	1	SO	guide_RNA_region	template_region
SO:0000602	SO:0000930	\N	"A short 3'-uridylated RNA that can form a duplex (except for its post-transcriptionally added oligo_U tail (SO:0000609)) with a stretch of mature edited mRNA." [http://www.rna.ucla.edu/index.html]	SO:0000978	"A region of a guide_RNA that specifies the insertions and deletions of bases in the editing of a target mRNA." [SO:jk]	1073081	\N	SOFA	sequence	2	SO	guide_RNA	template_region
SO:0000834	SO:0000930	\N	"A region of a mature transcript." [SO:ke]	SO:0000978	"A region of a guide_RNA that specifies the insertions and deletions of bases in the editing of a target mRNA." [SO:jk]	1073082	\N	SOFA	sequence	2	SO	mature_transcript_region	template_region
SO:0000655	SO:0000602	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000978	"A region of a guide_RNA that specifies the insertions and deletions of bases in the editing of a target mRNA." [SO:jk]	1904129	SOFA	SOFA	sequence	3	SO	ncRNA	template_region
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0000978	"A region of a guide_RNA that specifies the insertions and deletions of bases in the editing of a target mRNA." [SO:jk]	1904130	SOFA	SOFA	sequence	3	SO	transcript_region	template_region
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000978	"A region of a guide_RNA that specifies the insertions and deletions of bases in the editing of a target mRNA." [SO:jk]	2928567	SOFA	SOFA	sequence	4	SO	mature_transcript	template_region
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000978	"A region of a guide_RNA that specifies the insertions and deletions of bases in the editing of a target mRNA." [SO:jk]	2928568	SOFA	SOFA	sequence	4	SO	transcript	template_region
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000978	"A region of a guide_RNA that specifies the insertions and deletions of bases in the editing of a target mRNA." [SO:jk]	2928569	SOFA	SOFA	sequence	4	SO	biological_region	template_region
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000978	"A region of a guide_RNA that specifies the insertions and deletions of bases in the editing of a target mRNA." [SO:jk]	4001835	SOFA	SOFA	sequence	5	SO	transcript	template_region
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000978	"A region of a guide_RNA that specifies the insertions and deletions of bases in the editing of a target mRNA." [SO:jk]	4966276	SOFA	SOFA	sequence	6	SO	gene_member_region	template_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000978	"A region of a guide_RNA that specifies the insertions and deletions of bases in the editing of a target mRNA." [SO:jk]	6146646	SOFA	SOFA	sequence	8	SO	region	template_region
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000978	"A region of a guide_RNA that specifies the insertions and deletions of bases in the editing of a target mRNA." [SO:jk]	5407424	SOFA	SOFA	sequence	7	SO	biological_region	template_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000978	"A region of a guide_RNA that specifies the insertions and deletions of bases in the editing of a target mRNA." [SO:jk]	6469737	SOFA	SOFA	sequence	9	SO	sequence_feature	template_region
SO:0000979	\N	\N	"A non-protein_coding gene that encodes a guide_RNA." [SO:ma]	SO:0000979	"A non-protein_coding gene that encodes a guide_RNA." [SO:ma]	45867	\N	\N	sequence	0	SO	gRNA_encoding	gRNA_encoding
SO:0000011	SO:0000979	\N	"" []	SO:0000979	"A non-protein_coding gene that encodes a guide_RNA." [SO:ma]	490564	\N	\N	sequence	1	SO	non_protein_coding	gRNA_encoding
SO:0000401	SO:0000011	\N	"" []	SO:0000979	"A non-protein_coding gene that encodes a guide_RNA." [SO:ma]	1073083	\N	\N	sequence	2	SO	gene_attribute	gRNA_encoding
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000979	"A non-protein_coding gene that encodes a guide_RNA." [SO:ma]	1904131	\N	\N	sequence	3	SO	feature_attribute	gRNA_encoding
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000979	"A non-protein_coding gene that encodes a guide_RNA." [SO:ma]	2928570	\N	\N	sequence	4	SO	sequence_attribute	gRNA_encoding
SO:0000980	\N	\N	"A minicircle is a replicon, part of a kinetoplast, that encodes for guide RNAs." [PMID:8395055]	SO:0000980	"A minicircle is a replicon, part of a kinetoplast, that encodes for guide RNAs." [PMID:8395055]	45868	\N	\N	sequence	0	SO	minicircle	minicircle
SO:0001235	SO:0000980	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000980	"A minicircle is a replicon, part of a kinetoplast, that encodes for guide RNAs." [PMID:8395055]	490565	\N	SOFA	sequence	1	SO	replicon	minicircle
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000980	"A minicircle is a replicon, part of a kinetoplast, that encodes for guide RNAs." [PMID:8395055]	1073084	SOFA	SOFA	sequence	2	SO	biological_region	minicircle
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000980	"A minicircle is a replicon, part of a kinetoplast, that encodes for guide RNAs." [PMID:8395055]	1904132	SOFA	SOFA	sequence	3	SO	region	minicircle
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000980	"A minicircle is a replicon, part of a kinetoplast, that encodes for guide RNAs." [PMID:8395055]	2928571	SOFA	SOFA	sequence	4	SO	sequence_feature	minicircle
SO:0000981	\N	\N	"" []	SO:0000981	"" []	45869	\N	\N	sequence	0	SO	rho_dependent_bacterial_terminator	rho_dependent_bacterial_terminator
SO:0000614	SO:0000981	\N	"A terminator signal for bacterial transcription." [SO:ke]	SO:0000981	"" []	490566	\N	\N	sequence	1	SO	bacterial_terminator	rho_dependent_bacterial_terminator
SO:0000141	SO:0000614	\N	"The sequence of DNA located either at the end of the transcript that causes RNA polymerase to terminate transcription." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000981	"" []	1073085	\N	SOFA	sequence	2	SO	terminator	rho_dependent_bacterial_terminator
SO:0000752	SO:0000614	\N	"" []	SO:0000981	"" []	1073086	\N	SOFA	sequence	2	SO	gene_group_regulatory_region	rho_dependent_bacterial_terminator
SO:0000673	SO:0000141	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000981	"" []	1904133	SOFA	SOFA	sequence	3	SO	transcript	rho_dependent_bacterial_terminator
SO:0001679	SO:0000141	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000981	"" []	1904134	SOFA	SOFA	sequence	3	SO	transcription_regulatory_region	rho_dependent_bacterial_terminator
SO:0001679	SO:0000752	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000981	"" []	1904135	SOFA	SOFA	sequence	3	SO	transcription_regulatory_region	rho_dependent_bacterial_terminator
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000981	"" []	2928572	SOFA	SOFA	sequence	4	SO	gene_member_region	rho_dependent_bacterial_terminator
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000981	"" []	2928573	SOFA	SOFA	sequence	4	SO	regulatory_region	rho_dependent_bacterial_terminator
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000981	"" []	4966280	SOFA	SOFA	sequence	6	SO	biological_region	rho_dependent_bacterial_terminator
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0000981	"" []	4001839	SOFA	SOFA	sequence	5	SO	gene_member_region	rho_dependent_bacterial_terminator
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000981	"" []	5407425	SOFA	SOFA	sequence	7	SO	region	rho_dependent_bacterial_terminator
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000981	"" []	6146647	SOFA	SOFA	sequence	8	SO	sequence_feature	rho_dependent_bacterial_terminator
SO:0000982	\N	\N	"" []	SO:0000982	"" []	45870	\N	\N	sequence	0	SO	rho_independent_bacterial_terminator	rho_independent_bacterial_terminator
SO:0000614	SO:0000982	\N	"A terminator signal for bacterial transcription." [SO:ke]	SO:0000982	"" []	490567	\N	\N	sequence	1	SO	bacterial_terminator	rho_independent_bacterial_terminator
SO:0000141	SO:0000614	\N	"The sequence of DNA located either at the end of the transcript that causes RNA polymerase to terminate transcription." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0000982	"" []	1073087	\N	SOFA	sequence	2	SO	terminator	rho_independent_bacterial_terminator
SO:0000752	SO:0000614	\N	"" []	SO:0000982	"" []	1073088	\N	SOFA	sequence	2	SO	gene_group_regulatory_region	rho_independent_bacterial_terminator
SO:0000673	SO:0000141	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000982	"" []	1904136	SOFA	SOFA	sequence	3	SO	transcript	rho_independent_bacterial_terminator
SO:0001679	SO:0000141	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000982	"" []	1904137	SOFA	SOFA	sequence	3	SO	transcription_regulatory_region	rho_independent_bacterial_terminator
SO:0001679	SO:0000752	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0000982	"" []	1904138	SOFA	SOFA	sequence	3	SO	transcription_regulatory_region	rho_independent_bacterial_terminator
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000982	"" []	2928574	SOFA	SOFA	sequence	4	SO	gene_member_region	rho_independent_bacterial_terminator
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0000982	"" []	2928575	SOFA	SOFA	sequence	4	SO	regulatory_region	rho_independent_bacterial_terminator
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000982	"" []	4966282	SOFA	SOFA	sequence	6	SO	biological_region	rho_independent_bacterial_terminator
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0000982	"" []	4001841	SOFA	SOFA	sequence	5	SO	gene_member_region	rho_independent_bacterial_terminator
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000982	"" []	5407426	SOFA	SOFA	sequence	7	SO	region	rho_independent_bacterial_terminator
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000982	"" []	6146648	SOFA	SOFA	sequence	8	SO	sequence_feature	rho_independent_bacterial_terminator
SO:0000983	\N	\N	"" []	SO:0000983	"" []	45871	\N	\N	sequence	0	SO	strand_attribute	strand_attribute
SO:0000733	SO:0000983	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000983	"" []	490568	\N	\N	sequence	1	SO	feature_attribute	strand_attribute
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000983	"" []	1073089	\N	\N	sequence	2	SO	sequence_attribute	strand_attribute
SO:0000984	\N	\N	"" []	SO:0000984	"" []	45872	\N	\N	sequence	0	SO	single	single
SO:0000983	SO:0000984	\N	"" []	SO:0000984	"" []	490569	\N	\N	sequence	1	SO	strand_attribute	single
SO:0000733	SO:0000983	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000984	"" []	1073090	\N	\N	sequence	2	SO	feature_attribute	single
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000984	"" []	1904139	\N	\N	sequence	3	SO	sequence_attribute	single
SO:0000985	\N	\N	"" []	SO:0000985	"" []	45873	\N	\N	sequence	0	SO	double	double
SO:0000983	SO:0000985	\N	"" []	SO:0000985	"" []	490570	\N	\N	sequence	1	SO	strand_attribute	double
SO:0000733	SO:0000983	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000985	"" []	1073091	\N	\N	sequence	2	SO	feature_attribute	double
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000985	"" []	1904140	\N	\N	sequence	3	SO	sequence_attribute	double
SO:0000986	\N	\N	"" []	SO:0000986	"" []	45874	\N	\N	sequence	0	SO	topology_attribute	topology_attribute
SO:0000443	SO:0000986	\N	"An attribute to describe the kind of biological sequence." [SO:ke]	SO:0000986	"" []	490571	\N	\N	sequence	1	SO	polymer_attribute	topology_attribute
SO:0000400	SO:0000443	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000986	"" []	1073092	\N	\N	sequence	2	SO	sequence_attribute	topology_attribute
SO:0000987	\N	\N	"A quality of a nucleotide polymer that has a 3'-terminal residue and a 5'-terminal residue." [SO:cb]	SO:0000987	"A quality of a nucleotide polymer that has a 3'-terminal residue and a 5'-terminal residue." [SO:cb]	45875	\N	\N	sequence	0	SO	linear	linear
SO:0000986	SO:0000987	\N	"" []	SO:0000987	"A quality of a nucleotide polymer that has a 3'-terminal residue and a 5'-terminal residue." [SO:cb]	490572	\N	\N	sequence	1	SO	topology_attribute	linear
SO:0000443	SO:0000986	\N	"An attribute to describe the kind of biological sequence." [SO:ke]	SO:0000987	"A quality of a nucleotide polymer that has a 3'-terminal residue and a 5'-terminal residue." [SO:cb]	1073093	\N	\N	sequence	2	SO	polymer_attribute	linear
SO:0000400	SO:0000443	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000987	"A quality of a nucleotide polymer that has a 3'-terminal residue and a 5'-terminal residue." [SO:cb]	1904141	\N	\N	sequence	3	SO	sequence_attribute	linear
SO:0000988	\N	\N	"A quality of a nucleotide polymer that has no terminal nucleotide residues." [SO:cb]	SO:0000988	"A quality of a nucleotide polymer that has no terminal nucleotide residues." [SO:cb]	45876	\N	\N	sequence	0	SO	circular	circular
SO:0000986	SO:0000988	\N	"" []	SO:0000988	"A quality of a nucleotide polymer that has no terminal nucleotide residues." [SO:cb]	490573	\N	\N	sequence	1	SO	topology_attribute	circular
SO:0000443	SO:0000986	\N	"An attribute to describe the kind of biological sequence." [SO:ke]	SO:0000988	"A quality of a nucleotide polymer that has no terminal nucleotide residues." [SO:cb]	1073094	\N	\N	sequence	2	SO	polymer_attribute	circular
SO:0000400	SO:0000443	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000988	"A quality of a nucleotide polymer that has no terminal nucleotide residues." [SO:cb]	1904142	\N	\N	sequence	3	SO	sequence_attribute	circular
SO:0000989	\N	\N	"Small non-coding RNA (59-60 nt long) containing 5' and 3' ends that are predicted to come together to form a stem structure. Identified in the social amoeba Dictyostelium discoideum and localized in the cytoplasm." [PMID:15333696]	SO:0000989	"Small non-coding RNA (59-60 nt long) containing 5' and 3' ends that are predicted to come together to form a stem structure. Identified in the social amoeba Dictyostelium discoideum and localized in the cytoplasm." [PMID:15333696]	45877	\N	\N	sequence	0	SO	class_II_RNA	class_II_RNA
SO:0000655	SO:0000989	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000989	"Small non-coding RNA (59-60 nt long) containing 5' and 3' ends that are predicted to come together to form a stem structure. Identified in the social amoeba Dictyostelium discoideum and localized in the cytoplasm." [PMID:15333696]	490574	\N	SOFA	sequence	1	SO	ncRNA	class_II_RNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000989	"Small non-coding RNA (59-60 nt long) containing 5' and 3' ends that are predicted to come together to form a stem structure. Identified in the social amoeba Dictyostelium discoideum and localized in the cytoplasm." [PMID:15333696]	1073095	SOFA	SOFA	sequence	2	SO	mature_transcript	class_II_RNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000989	"Small non-coding RNA (59-60 nt long) containing 5' and 3' ends that are predicted to come together to form a stem structure. Identified in the social amoeba Dictyostelium discoideum and localized in the cytoplasm." [PMID:15333696]	1904143	SOFA	SOFA	sequence	3	SO	transcript	class_II_RNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000989	"Small non-coding RNA (59-60 nt long) containing 5' and 3' ends that are predicted to come together to form a stem structure. Identified in the social amoeba Dictyostelium discoideum and localized in the cytoplasm." [PMID:15333696]	2928576	SOFA	SOFA	sequence	4	SO	gene_member_region	class_II_RNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000989	"Small non-coding RNA (59-60 nt long) containing 5' and 3' ends that are predicted to come together to form a stem structure. Identified in the social amoeba Dictyostelium discoideum and localized in the cytoplasm." [PMID:15333696]	4001842	SOFA	SOFA	sequence	5	SO	biological_region	class_II_RNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000989	"Small non-coding RNA (59-60 nt long) containing 5' and 3' ends that are predicted to come together to form a stem structure. Identified in the social amoeba Dictyostelium discoideum and localized in the cytoplasm." [PMID:15333696]	4966283	SOFA	SOFA	sequence	6	SO	region	class_II_RNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000989	"Small non-coding RNA (59-60 nt long) containing 5' and 3' ends that are predicted to come together to form a stem structure. Identified in the social amoeba Dictyostelium discoideum and localized in the cytoplasm." [PMID:15333696]	5741120	SOFA	SOFA	sequence	7	SO	sequence_feature	class_II_RNA
SO:0000990	\N	\N	"Small non-coding RNA (55-65 nt long) containing highly conserved 5' and 3' ends (16 and 8 nt, respectively) that are predicted to come together to form a stem structure. Identified in the social amoeba Dictyostelium discoideum and localized in the cytoplasm." [PMID:15333696]	SO:0000990	"Small non-coding RNA (55-65 nt long) containing highly conserved 5' and 3' ends (16 and 8 nt, respectively) that are predicted to come together to form a stem structure. Identified in the social amoeba Dictyostelium discoideum and localized in the cytoplasm." [PMID:15333696]	45878	\N	\N	sequence	0	SO	class_I_RNA	class_I_RNA
SO:0000655	SO:0000990	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0000990	"Small non-coding RNA (55-65 nt long) containing highly conserved 5' and 3' ends (16 and 8 nt, respectively) that are predicted to come together to form a stem structure. Identified in the social amoeba Dictyostelium discoideum and localized in the cytoplasm." [PMID:15333696]	490575	\N	SOFA	sequence	1	SO	ncRNA	class_I_RNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000990	"Small non-coding RNA (55-65 nt long) containing highly conserved 5' and 3' ends (16 and 8 nt, respectively) that are predicted to come together to form a stem structure. Identified in the social amoeba Dictyostelium discoideum and localized in the cytoplasm." [PMID:15333696]	1073096	SOFA	SOFA	sequence	2	SO	mature_transcript	class_I_RNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000990	"Small non-coding RNA (55-65 nt long) containing highly conserved 5' and 3' ends (16 and 8 nt, respectively) that are predicted to come together to form a stem structure. Identified in the social amoeba Dictyostelium discoideum and localized in the cytoplasm." [PMID:15333696]	1904144	SOFA	SOFA	sequence	3	SO	transcript	class_I_RNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000990	"Small non-coding RNA (55-65 nt long) containing highly conserved 5' and 3' ends (16 and 8 nt, respectively) that are predicted to come together to form a stem structure. Identified in the social amoeba Dictyostelium discoideum and localized in the cytoplasm." [PMID:15333696]	2928577	SOFA	SOFA	sequence	4	SO	gene_member_region	class_I_RNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000990	"Small non-coding RNA (55-65 nt long) containing highly conserved 5' and 3' ends (16 and 8 nt, respectively) that are predicted to come together to form a stem structure. Identified in the social amoeba Dictyostelium discoideum and localized in the cytoplasm." [PMID:15333696]	4001843	SOFA	SOFA	sequence	5	SO	biological_region	class_I_RNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000990	"Small non-coding RNA (55-65 nt long) containing highly conserved 5' and 3' ends (16 and 8 nt, respectively) that are predicted to come together to form a stem structure. Identified in the social amoeba Dictyostelium discoideum and localized in the cytoplasm." [PMID:15333696]	4966284	SOFA	SOFA	sequence	6	SO	region	class_I_RNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000990	"Small non-coding RNA (55-65 nt long) containing highly conserved 5' and 3' ends (16 and 8 nt, respectively) that are predicted to come together to form a stem structure. Identified in the social amoeba Dictyostelium discoideum and localized in the cytoplasm." [PMID:15333696]	5741121	SOFA	SOFA	sequence	7	SO	sequence_feature	class_I_RNA
SO:0000991	\N	\N	"" []	SO:0000991	"" []	45879	\N	\N	sequence	0	SO	genomic_DNA	genomic_DNA
SO:0000352	SO:0000991	\N	"An attribute describing a sequence consisting of nucleobases bound to a repeating unit made of a 2-deoxy-D-ribose ring connected to a phosphate backbone." [RSC:cb]	SO:0000991	"" []	490576	\N	\N	sequence	1	SO	DNA	genomic_DNA
SO:0000348	SO:0000352	\N	"An attribute describing a sequence consisting of nucleobases bound to repeating units. The forms found in nature are deoxyribonucleic acid (DNA), where the repeating units are 2-deoxy-D-ribose rings connected to a phosphate backbone, and ribonucleic acid (RNA), where the repeating units are D-ribose rings connected to a phosphate backbone." [CHEBI:33696, RSC:cb]	SO:0000991	"" []	1073097	\N	\N	sequence	2	SO	nucleic_acid	genomic_DNA
SO:0000443	SO:0000348	\N	"An attribute to describe the kind of biological sequence." [SO:ke]	SO:0000991	"" []	1904145	\N	\N	sequence	3	SO	polymer_attribute	genomic_DNA
SO:0000400	SO:0000443	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000991	"" []	2928578	\N	\N	sequence	4	SO	sequence_attribute	genomic_DNA
SO:0000992	\N	\N	"" []	SO:0000992	"" []	45880	\N	\N	sequence	0	SO	BAC_cloned_genomic_insert	BAC_cloned_genomic_insert
SO:0000914	SO:0000992	\N	"A clone insert made from genomic DNA." [SO:xp]	SO:0000992	"" []	490577	\N	\N	sequence	1	SO	cloned_genomic_insert	BAC_cloned_genomic_insert
SO:0000753	SO:0000914	\N	"The region of sequence that has been inserted and is being propagated by the clone." [SO:ke]	SO:0000992	"" []	1073098	\N	SOFA	sequence	2	SO	clone_insert	BAC_cloned_genomic_insert
SO:0000151	SO:0000753	\N	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0000992	"" []	1904146	SOFA	SOFA	sequence	3	SO	clone	BAC_cloned_genomic_insert
SO:0000695	SO:0000753	\N	"A sequence used in experiment." [SO:ke]	SO:0000992	"" []	1904147	SOFA	SOFA	sequence	3	SO	reagent	BAC_cloned_genomic_insert
SO:0000695	SO:0000151	\N	"A sequence used in experiment." [SO:ke]	SO:0000992	"" []	2928579	SOFA	SOFA	sequence	4	SO	reagent	BAC_cloned_genomic_insert
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000992	"" []	4001844	SOFA	SOFA	sequence	5	SO	biomaterial_region	BAC_cloned_genomic_insert
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000992	"" []	4385764	SOFA	SOFA	sequence	6	SO	region	BAC_cloned_genomic_insert
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000992	"" []	5407427	SOFA	SOFA	sequence	7	SO	sequence_feature	BAC_cloned_genomic_insert
SO:0000993	\N	\N	"" []	SO:0000993	"" []	45881	\N	\N	sequence	0	SO	consensus	consensus
SO:0000905	SO:0000993	\N	"An attribute describing the status of a feature, based on the available evidence." [SO:ke]	SO:0000993	"" []	490578	\N	\N	sequence	1	SO	status	consensus
SO:0000733	SO:0000905	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0000993	"" []	1073099	\N	\N	sequence	2	SO	feature_attribute	consensus
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0000993	"" []	1904148	\N	\N	sequence	3	SO	sequence_attribute	consensus
SO:0000994	\N	\N	"" []	SO:0000994	"" []	45882	\N	\N	sequence	0	SO	consensus_region	consensus_region
SO:0001410	SO:0000994	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000994	"" []	490579	\N	SOFA	sequence	1	SO	experimental_feature	consensus_region
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000994	"" []	1073100	SOFA	SOFA	sequence	2	SO	region	consensus_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000994	"" []	1904149	SOFA	SOFA	sequence	3	SO	sequence_feature	consensus_region
SO:0000995	\N	\N	"" []	SO:0000995	"" []	45883	\N	\N	sequence	0	SO	consensus_mRNA	consensus_mRNA
SO:0000234	SO:0000995	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0000995	"" []	490580	\N	SOFA	sequence	1	SO	mRNA	consensus_mRNA
SO:0000994	SO:0000995	\N	"" []	SO:0000995	"" []	490581	\N	\N	sequence	1	SO	consensus_region	consensus_mRNA
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0000995	"" []	1073101	SOFA	SOFA	sequence	2	SO	mature_transcript	consensus_mRNA
SO:0001410	SO:0000994	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000995	"" []	1073102	\N	SOFA	sequence	2	SO	experimental_feature	consensus_mRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000995	"" []	1904150	SOFA	SOFA	sequence	3	SO	transcript	consensus_mRNA
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000995	"" []	1904151	SOFA	SOFA	sequence	3	SO	region	consensus_mRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000995	"" []	2928581	SOFA	SOFA	sequence	4	SO	gene_member_region	consensus_mRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000995	"" []	5741122	SOFA	SOFA	sequence	7	SO	sequence_feature	consensus_mRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000995	"" []	4001846	SOFA	SOFA	sequence	5	SO	biological_region	consensus_mRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000995	"" []	4966286	SOFA	SOFA	sequence	6	SO	region	consensus_mRNA
SO:0000996	\N	\N	"" []	SO:0000996	"" []	45884	\N	\N	sequence	0	SO	predicted_gene	predicted_gene
SO:0000704	SO:0000996	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000996	"" []	490582	\N	SOFA	sequence	1	SO	gene	predicted_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000996	"" []	1073103	SOFA	SOFA	sequence	2	SO	biological_region	predicted_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000996	"" []	1904152	SOFA	SOFA	sequence	3	SO	region	predicted_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000996	"" []	2928583	SOFA	SOFA	sequence	4	SO	sequence_feature	predicted_gene
SO:0000997	\N	\N	"" []	SO:0000997	"" []	45885	\N	\N	sequence	0	SO	gene_fragment	gene_fragment
SO:0000842	SO:0000997	\N	"" []	SO:0000997	"" []	490583	\N	SOFA	sequence	1	SO	gene_component_region	gene_fragment
SO:0000704	SO:0000842	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0000997	"" []	1073104	SOFA	SOFA	sequence	2	SO	gene	gene_fragment
SO:0001411	SO:0000842	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000997	"" []	1073105	SOFA	SOFA	sequence	2	SO	biological_region	gene_fragment
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000997	"" []	1904153	SOFA	SOFA	sequence	3	SO	biological_region	gene_fragment
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000997	"" []	2928584	SOFA	SOFA	sequence	4	SO	region	gene_fragment
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000997	"" []	3173913	SOFA	SOFA	sequence	5	SO	sequence_feature	gene_fragment
SO:0000998	\N	\N	"A recursive splice site is a splice site which subdivides a large intron. Recursive splicing is a mechanism that splices large introns by sub dividing the intron at non exonic elements and alternate exons." [http://www.genetics.org/cgi/content/full/170/2/661]	SO:0000998	"A recursive splice site is a splice site which subdivides a large intron. Recursive splicing is a mechanism that splices large introns by sub dividing the intron at non exonic elements and alternate exons." [http://www.genetics.org/cgi/content/full/170/2/661]	45886	\N	\N	sequence	0	SO	recursive_splice_site	recursive_splice_site
SO:0001419	SO:0000998	\N	"Intronic 2 bp region bordering exon. A splice_site that adjacent_to exon and overlaps intron." [SO:cjm, SO:ke]	SO:0000998	"A recursive splice site is a splice site which subdivides a large intron. Recursive splicing is a mechanism that splices large introns by sub dividing the intron at non exonic elements and alternate exons." [http://www.genetics.org/cgi/content/full/170/2/661]	490584	\N	SOFA	sequence	1	SO	cis_splice_site	recursive_splice_site
SO:0000162	SO:0001419	\N	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	SO:0000998	"A recursive splice site is a splice site which subdivides a large intron. Recursive splicing is a mechanism that splices large introns by sub dividing the intron at non exonic elements and alternate exons." [http://www.genetics.org/cgi/content/full/170/2/661]	1073106	SOFA	SOFA	sequence	2	SO	splice_site	recursive_splice_site
SO:0000835	SO:0000162	\N	"A part of a primary transcript." [SO:ke]	SO:0000998	"A recursive splice site is a splice site which subdivides a large intron. Recursive splicing is a mechanism that splices large introns by sub dividing the intron at non exonic elements and alternate exons." [http://www.genetics.org/cgi/content/full/170/2/661]	1904155	SOFA	SOFA	sequence	3	SO	primary_transcript_region	recursive_splice_site
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0000998	"A recursive splice site is a splice site which subdivides a large intron. Recursive splicing is a mechanism that splices large introns by sub dividing the intron at non exonic elements and alternate exons." [http://www.genetics.org/cgi/content/full/170/2/661]	2928586	SOFA	SOFA	sequence	4	SO	primary_transcript	recursive_splice_site
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0000998	"A recursive splice site is a splice site which subdivides a large intron. Recursive splicing is a mechanism that splices large introns by sub dividing the intron at non exonic elements and alternate exons." [http://www.genetics.org/cgi/content/full/170/2/661]	2928587	SOFA	SOFA	sequence	4	SO	transcript_region	recursive_splice_site
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000998	"A recursive splice site is a splice site which subdivides a large intron. Recursive splicing is a mechanism that splices large introns by sub dividing the intron at non exonic elements and alternate exons." [http://www.genetics.org/cgi/content/full/170/2/661]	4001847	SOFA	SOFA	sequence	5	SO	transcript	recursive_splice_site
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0000998	"A recursive splice site is a splice site which subdivides a large intron. Recursive splicing is a mechanism that splices large introns by sub dividing the intron at non exonic elements and alternate exons." [http://www.genetics.org/cgi/content/full/170/2/661]	4001848	SOFA	SOFA	sequence	5	SO	transcript	recursive_splice_site
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000998	"A recursive splice site is a splice site which subdivides a large intron. Recursive splicing is a mechanism that splices large introns by sub dividing the intron at non exonic elements and alternate exons." [http://www.genetics.org/cgi/content/full/170/2/661]	4001849	SOFA	SOFA	sequence	5	SO	biological_region	recursive_splice_site
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0000998	"A recursive splice site is a splice site which subdivides a large intron. Recursive splicing is a mechanism that splices large introns by sub dividing the intron at non exonic elements and alternate exons." [http://www.genetics.org/cgi/content/full/170/2/661]	4966287	SOFA	SOFA	sequence	6	SO	gene_member_region	recursive_splice_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000998	"A recursive splice site is a splice site which subdivides a large intron. Recursive splicing is a mechanism that splices large introns by sub dividing the intron at non exonic elements and alternate exons." [http://www.genetics.org/cgi/content/full/170/2/661]	6310998	SOFA	SOFA	sequence	8	SO	region	recursive_splice_site
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000998	"A recursive splice site is a splice site which subdivides a large intron. Recursive splicing is a mechanism that splices large introns by sub dividing the intron at non exonic elements and alternate exons." [http://www.genetics.org/cgi/content/full/170/2/661]	5741123	SOFA	SOFA	sequence	7	SO	biological_region	recursive_splice_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000998	"A recursive splice site is a splice site which subdivides a large intron. Recursive splicing is a mechanism that splices large introns by sub dividing the intron at non exonic elements and alternate exons." [http://www.genetics.org/cgi/content/full/170/2/661]	6550271	SOFA	SOFA	sequence	9	SO	sequence_feature	recursive_splice_site
SO:0000999	\N	\N	"A region of sequence from the end of a BAC clone that may provide a highly specific marker." [SO:ke]	SO:0000999	"A region of sequence from the end of a BAC clone that may provide a highly specific marker." [SO:ke]	45887	\N	\N	sequence	0	SO	BAC_end	BAC_end
SO:0000150	SO:0000999	\N	"A sequence obtained from a single sequencing experiment. Typically a read is produced when a base calling program interprets information from a chromatogram trace file produced from a sequencing machine." [SO:rd]	SO:0000999	"A region of sequence from the end of a BAC clone that may provide a highly specific marker." [SO:ke]	490585	\N	SOFA	sequence	1	SO	read	BAC_end
SO:0000153	SO:0000999	\N	"Bacterial Artificial Chromosome, a cloning vector that can be propagated as mini-chromosomes in a bacterial host." [SO:ma]	SO:0000999	"A region of sequence from the end of a BAC clone that may provide a highly specific marker." [SO:ke]	490586	\N	\N	sequence	1	SO	BAC	BAC_end
SO:0000143	SO:0000150	\N	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0000999	"A region of sequence from the end of a BAC clone that may provide a highly specific marker." [SO:ke]	1073107	SOFA	SOFA	sequence	2	SO	assembly_component	BAC_end
SO:0000149	SO:0000150	\N	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	SO:0000999	"A region of sequence from the end of a BAC clone that may provide a highly specific marker." [SO:ke]	1073108	SOFA	SOFA	sequence	2	SO	contig	BAC_end
SO:0000440	SO:0000153	\N	"A replicon that has been modified to act as a vector for foreign sequence." [SO:ma]	SO:0000999	"A region of sequence from the end of a BAC clone that may provide a highly specific marker." [SO:ke]	1073109	\N	\N	sequence	2	SO	vector_replicon	BAC_end
SO:0001410	SO:0000143	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000999	"A region of sequence from the end of a BAC clone that may provide a highly specific marker." [SO:ke]	2928589	SOFA	SOFA	sequence	4	SO	experimental_feature	BAC_end
SO:0000143	SO:0000149	\N	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0000999	"A region of sequence from the end of a BAC clone that may provide a highly specific marker." [SO:ke]	1904157	SOFA	SOFA	sequence	3	SO	assembly_component	BAC_end
SO:0000148	SO:0000149	\N	"One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's." [SO:ls]	SO:0000999	"A region of sequence from the end of a BAC clone that may provide a highly specific marker." [SO:ke]	1904158	SOFA	SOFA	sequence	3	SO	supercontig	BAC_end
SO:0000353	SO:0000149	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0000999	"A region of sequence from the end of a BAC clone that may provide a highly specific marker." [SO:ke]	1904159	SOFA	SOFA	sequence	3	SO	sequence_assembly	BAC_end
SO:0000151	SO:0000440	\N	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0000999	"A region of sequence from the end of a BAC clone that may provide a highly specific marker." [SO:ke]	1904160	\N	SOFA	sequence	3	SO	clone	BAC_end
SO:0001235	SO:0000440	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0000999	"A region of sequence from the end of a BAC clone that may provide a highly specific marker." [SO:ke]	1904161	\N	SOFA	sequence	3	SO	replicon	BAC_end
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000999	"A region of sequence from the end of a BAC clone that may provide a highly specific marker." [SO:ke]	6469738	SOFA	SOFA	sequence	9	SO	region	BAC_end
SO:0000719	SO:0000148	\N	"An ordered and oriented set of scaffolds based on somewhat weaker sets of inferential evidence such as one set of mate pair reads together with supporting evidence from ESTs or location of markers from SNP or microsatellite maps, or cytogenetic localization of contained markers." [FB:WG]	SO:0000999	"A region of sequence from the end of a BAC clone that may provide a highly specific marker." [SO:ke]	2928590	SOFA	SOFA	sequence	4	SO	ultracontig	BAC_end
SO:0001876	SO:0000148	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0000999	"A region of sequence from the end of a BAC clone that may provide a highly specific marker." [SO:ke]	2928591	SOFA	\N	sequence	4	SO	partial_genomic_sequence_assembly	BAC_end
SO:0001248	SO:0000353	\N	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0000999	"A region of sequence from the end of a BAC clone that may provide a highly specific marker." [SO:ke]	5407428	SOFA	SOFA	sequence	7	SO	assembly	BAC_end
SO:0000695	SO:0000151	\N	"A sequence used in experiment." [SO:ke]	SO:0000999	"A region of sequence from the end of a BAC clone that may provide a highly specific marker." [SO:ke]	2928593	SOFA	SOFA	sequence	4	SO	reagent	BAC_end
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0000999	"A region of sequence from the end of a BAC clone that may provide a highly specific marker." [SO:ke]	2928594	SOFA	SOFA	sequence	4	SO	biological_region	BAC_end
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0000999	"A region of sequence from the end of a BAC clone that may provide a highly specific marker." [SO:ke]	6778555	SOFA	SOFA	sequence	10	SO	sequence_feature	BAC_end
SO:0001876	SO:0000719	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0000999	"A region of sequence from the end of a BAC clone that may provide a highly specific marker." [SO:ke]	4001851	SOFA	\N	sequence	5	SO	partial_genomic_sequence_assembly	BAC_end
SO:0000353	SO:0001876	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0000999	"A region of sequence from the end of a BAC clone that may provide a highly specific marker." [SO:ke]	4966289	\N	SOFA	sequence	6	SO	sequence_assembly	BAC_end
SO:0001410	SO:0001248	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0000999	"A region of sequence from the end of a BAC clone that may provide a highly specific marker." [SO:ke]	5876439	SOFA	SOFA	sequence	8	SO	experimental_feature	BAC_end
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0000999	"A region of sequence from the end of a BAC clone that may provide a highly specific marker." [SO:ke]	4001854	SOFA	SOFA	sequence	5	SO	biomaterial_region	BAC_end
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000999	"A region of sequence from the end of a BAC clone that may provide a highly specific marker." [SO:ke]	4001855	SOFA	SOFA	sequence	5	SO	region	BAC_end
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0000999	"A region of sequence from the end of a BAC clone that may provide a highly specific marker." [SO:ke]	4966292	SOFA	SOFA	sequence	6	SO	region	BAC_end
SO:0001000	\N	SOFA	"A large polynucleotide in Bacteria and Archaea, which functions as the small subunit of the ribosome." [SO:ke]	SO:0001000	"A large polynucleotide in Bacteria and Archaea, which functions as the small subunit of the ribosome." [SO:ke]	45888	\N	SOFA	sequence	0	SO	rRNA_16S	rRNA_16S
SO:0000650	SO:0001000	SOFA	"Ribosomal RNA transcript that structures the small subunit of the ribosome." [SO:ke]	SO:0001000	"A large polynucleotide in Bacteria and Archaea, which functions as the small subunit of the ribosome." [SO:ke]	490587	SOFA	SOFA	sequence	1	SO	small_subunit_rRNA	rRNA_16S
SO:0000252	SO:0000650	SOFA	"RNA that comprises part of a ribosome, and that can provide both structural scaffolding and catalytic activity." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, ISBN:0198506732]	SO:0001000	"A large polynucleotide in Bacteria and Archaea, which functions as the small subunit of the ribosome." [SO:ke]	1073110	SOFA	SOFA	sequence	2	SO	rRNA	rRNA_16S
SO:0000655	SO:0000252	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0001000	"A large polynucleotide in Bacteria and Archaea, which functions as the small subunit of the ribosome." [SO:ke]	1904162	SOFA	SOFA	sequence	3	SO	ncRNA	rRNA_16S
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001000	"A large polynucleotide in Bacteria and Archaea, which functions as the small subunit of the ribosome." [SO:ke]	2928595	SOFA	SOFA	sequence	4	SO	mature_transcript	rRNA_16S
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001000	"A large polynucleotide in Bacteria and Archaea, which functions as the small subunit of the ribosome." [SO:ke]	4001856	SOFA	SOFA	sequence	5	SO	transcript	rRNA_16S
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0001000	"A large polynucleotide in Bacteria and Archaea, which functions as the small subunit of the ribosome." [SO:ke]	4966293	SOFA	SOFA	sequence	6	SO	gene_member_region	rRNA_16S
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001000	"A large polynucleotide in Bacteria and Archaea, which functions as the small subunit of the ribosome." [SO:ke]	5741125	SOFA	SOFA	sequence	7	SO	biological_region	rRNA_16S
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001000	"A large polynucleotide in Bacteria and Archaea, which functions as the small subunit of the ribosome." [SO:ke]	6310999	SOFA	SOFA	sequence	8	SO	region	rRNA_16S
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001000	"A large polynucleotide in Bacteria and Archaea, which functions as the small subunit of the ribosome." [SO:ke]	6699331	SOFA	SOFA	sequence	9	SO	sequence_feature	rRNA_16S
SO:0001001	\N	SOFA	"A large polynucleotide in Bacteria and Archaea, which functions as the large subunit of the ribosome." [SO:ke]	SO:0001001	"A large polynucleotide in Bacteria and Archaea, which functions as the large subunit of the ribosome." [SO:ke]	45889	\N	SOFA	sequence	0	SO	rRNA_23S	rRNA_23S
SO:0000651	SO:0001001	SOFA	"Ribosomal RNA transcript that structures the large subunit of the ribosome." [SO:ke]	SO:0001001	"A large polynucleotide in Bacteria and Archaea, which functions as the large subunit of the ribosome." [SO:ke]	490588	SOFA	SOFA	sequence	1	SO	large_subunit_rRNA	rRNA_23S
SO:0000252	SO:0000651	SOFA	"RNA that comprises part of a ribosome, and that can provide both structural scaffolding and catalytic activity." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, ISBN:0198506732]	SO:0001001	"A large polynucleotide in Bacteria and Archaea, which functions as the large subunit of the ribosome." [SO:ke]	1073111	SOFA	SOFA	sequence	2	SO	rRNA	rRNA_23S
SO:0000655	SO:0000252	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0001001	"A large polynucleotide in Bacteria and Archaea, which functions as the large subunit of the ribosome." [SO:ke]	1904163	SOFA	SOFA	sequence	3	SO	ncRNA	rRNA_23S
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001001	"A large polynucleotide in Bacteria and Archaea, which functions as the large subunit of the ribosome." [SO:ke]	2928596	SOFA	SOFA	sequence	4	SO	mature_transcript	rRNA_23S
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001001	"A large polynucleotide in Bacteria and Archaea, which functions as the large subunit of the ribosome." [SO:ke]	4001857	SOFA	SOFA	sequence	5	SO	transcript	rRNA_23S
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0001001	"A large polynucleotide in Bacteria and Archaea, which functions as the large subunit of the ribosome." [SO:ke]	4966294	SOFA	SOFA	sequence	6	SO	gene_member_region	rRNA_23S
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001001	"A large polynucleotide in Bacteria and Archaea, which functions as the large subunit of the ribosome." [SO:ke]	5741126	SOFA	SOFA	sequence	7	SO	biological_region	rRNA_23S
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001001	"A large polynucleotide in Bacteria and Archaea, which functions as the large subunit of the ribosome." [SO:ke]	6311000	SOFA	SOFA	sequence	8	SO	region	rRNA_23S
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001001	"A large polynucleotide in Bacteria and Archaea, which functions as the large subunit of the ribosome." [SO:ke]	6699332	SOFA	SOFA	sequence	9	SO	sequence_feature	rRNA_23S
SO:0001002	\N	SOFA	"A large polynucleotide which functions as part of the large subunit of the ribosome in some eukaryotes." [RSC:cb]	SO:0001002	"A large polynucleotide which functions as part of the large subunit of the ribosome in some eukaryotes." [RSC:cb]	45890	\N	SOFA	sequence	0	SO	rRNA_25S	rRNA_25S
SO:0000651	SO:0001002	SOFA	"Ribosomal RNA transcript that structures the large subunit of the ribosome." [SO:ke]	SO:0001002	"A large polynucleotide which functions as part of the large subunit of the ribosome in some eukaryotes." [RSC:cb]	490589	SOFA	SOFA	sequence	1	SO	large_subunit_rRNA	rRNA_25S
SO:0000252	SO:0000651	SOFA	"RNA that comprises part of a ribosome, and that can provide both structural scaffolding and catalytic activity." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, ISBN:0198506732]	SO:0001002	"A large polynucleotide which functions as part of the large subunit of the ribosome in some eukaryotes." [RSC:cb]	1073112	SOFA	SOFA	sequence	2	SO	rRNA	rRNA_25S
SO:0000655	SO:0000252	SOFA	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0001002	"A large polynucleotide which functions as part of the large subunit of the ribosome in some eukaryotes." [RSC:cb]	1904164	SOFA	SOFA	sequence	3	SO	ncRNA	rRNA_25S
SO:0000233	SO:0000655	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001002	"A large polynucleotide which functions as part of the large subunit of the ribosome in some eukaryotes." [RSC:cb]	2928597	SOFA	SOFA	sequence	4	SO	mature_transcript	rRNA_25S
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001002	"A large polynucleotide which functions as part of the large subunit of the ribosome in some eukaryotes." [RSC:cb]	4001858	SOFA	SOFA	sequence	5	SO	transcript	rRNA_25S
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0001002	"A large polynucleotide which functions as part of the large subunit of the ribosome in some eukaryotes." [RSC:cb]	4966295	SOFA	SOFA	sequence	6	SO	gene_member_region	rRNA_25S
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001002	"A large polynucleotide which functions as part of the large subunit of the ribosome in some eukaryotes." [RSC:cb]	5741127	SOFA	SOFA	sequence	7	SO	biological_region	rRNA_25S
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001002	"A large polynucleotide which functions as part of the large subunit of the ribosome in some eukaryotes." [RSC:cb]	6311001	SOFA	SOFA	sequence	8	SO	region	rRNA_25S
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001002	"A large polynucleotide which functions as part of the large subunit of the ribosome in some eukaryotes." [RSC:cb]	6699333	SOFA	SOFA	sequence	9	SO	sequence_feature	rRNA_25S
SO:0001003	\N	\N	"A recombination product between the 2 LTR of the same element." [SO:ke]	SO:0001003	"A recombination product between the 2 LTR of the same element." [SO:ke]	45891	\N	\N	sequence	0	SO	solo_LTR	solo_LTR
SO:0000286	SO:0001003	\N	"A sequence directly repeated at both ends of a defined sequence, of the sort typically found in retroviruses." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001003	"A recombination product between the 2 LTR of the same element." [SO:ke]	490590	\N	\N	sequence	1	SO	long_terminal_repeat	solo_LTR
SO:0000186	SO:0000286	\N	"A retrotransposon flanked by long terminal repeat sequences." [SO:ke]	SO:0001003	"A recombination product between the 2 LTR of the same element." [SO:ke]	1073113	\N	\N	sequence	2	SO	LTR_retrotransposon	solo_LTR
SO:0000657	SO:0000286	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0001003	"A recombination product between the 2 LTR of the same element." [SO:ke]	1073114	\N	SOFA	sequence	2	SO	repeat_region	solo_LTR
SO:0000180	SO:0000186	\N	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	SO:0001003	"A recombination product between the 2 LTR of the same element." [SO:ke]	1904165	\N	\N	sequence	3	SO	retrotransposon	solo_LTR
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001003	"A recombination product between the 2 LTR of the same element." [SO:ke]	1904166	SOFA	SOFA	sequence	3	SO	biological_region	solo_LTR
SO:0000101	SO:0000180	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0001003	"A recombination product between the 2 LTR of the same element." [SO:ke]	2928598	\N	SOFA	sequence	4	SO	transposable_element	solo_LTR
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001003	"A recombination product between the 2 LTR of the same element." [SO:ke]	6311002	SOFA	SOFA	sequence	8	SO	region	solo_LTR
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0001003	"A recombination product between the 2 LTR of the same element." [SO:ke]	4001859	SOFA	SOFA	sequence	5	SO	integrated_mobile_genetic_element	solo_LTR
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001003	"A recombination product between the 2 LTR of the same element." [SO:ke]	6409701	SOFA	SOFA	sequence	9	SO	sequence_feature	solo_LTR
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0001003	"A recombination product between the 2 LTR of the same element." [SO:ke]	4966296	SOFA	SOFA	sequence	6	SO	mobile_genetic_element	solo_LTR
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001003	"A recombination product between the 2 LTR of the same element." [SO:ke]	5741128	SOFA	SOFA	sequence	7	SO	biological_region	solo_LTR
SO:0001004	\N	\N	"" []	SO:0001004	"" []	45892	\N	\N	sequence	0	SO	low_complexity	low_complexity
SO:0000905	SO:0001004	\N	"An attribute describing the status of a feature, based on the available evidence." [SO:ke]	SO:0001004	"" []	490591	\N	\N	sequence	1	SO	status	low_complexity
SO:0000733	SO:0000905	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001004	"" []	1073115	\N	\N	sequence	2	SO	feature_attribute	low_complexity
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001004	"" []	1904167	\N	\N	sequence	3	SO	sequence_attribute	low_complexity
SO:0001005	\N	\N	"" []	SO:0001005	"" []	45893	\N	\N	sequence	0	SO	low_complexity_region	low_complexity_region
SO:0001410	SO:0001005	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001005	"" []	490592	\N	SOFA	sequence	1	SO	experimental_feature	low_complexity_region
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001005	"" []	1073116	SOFA	SOFA	sequence	2	SO	region	low_complexity_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001005	"" []	1904168	SOFA	SOFA	sequence	3	SO	sequence_feature	low_complexity_region
SO:0001006	\N	\N	"A phage genome after it has established in the host genome in a latent/immune state either as a plasmid or as an integrated \\"island\\"." [GOC:jl]	SO:0001006	"A phage genome after it has established in the host genome in a latent/immune state either as a plasmid or as an integrated \\"island\\"." [GOC:jl]	45894	\N	\N	sequence	0	SO	prophage	prophage
SO:0000113	SO:0001006	\N	"A viral sequence which has integrated into a host genome." [SO:ke]	SO:0001006	"A phage genome after it has established in the host genome in a latent/immune state either as a plasmid or as an integrated \\"island\\"." [GOC:jl]	490593	\N	SOFA	sequence	1	SO	proviral_region	prophage
SO:0001039	SO:0000113	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0001006	"A phage genome after it has established in the host genome in a latent/immune state either as a plasmid or as an integrated \\"island\\"." [GOC:jl]	1073117	SOFA	SOFA	sequence	2	SO	integrated_mobile_genetic_element	prophage
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0001006	"A phage genome after it has established in the host genome in a latent/immune state either as a plasmid or as an integrated \\"island\\"." [GOC:jl]	1904169	SOFA	SOFA	sequence	3	SO	mobile_genetic_element	prophage
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001006	"A phage genome after it has established in the host genome in a latent/immune state either as a plasmid or as an integrated \\"island\\"." [GOC:jl]	2928600	SOFA	SOFA	sequence	4	SO	biological_region	prophage
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001006	"A phage genome after it has established in the host genome in a latent/immune state either as a plasmid or as an integrated \\"island\\"." [GOC:jl]	4001861	SOFA	SOFA	sequence	5	SO	region	prophage
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001006	"A phage genome after it has established in the host genome in a latent/immune state either as a plasmid or as an integrated \\"island\\"." [GOC:jl]	4966297	SOFA	SOFA	sequence	6	SO	sequence_feature	prophage
SO:0001007	\N	\N	"A remnant of an integrated prophage in the host genome or an \\"island\\" in the host genome that includes phage like-genes." [GOC:jl]	SO:0001007	"A remnant of an integrated prophage in the host genome or an \\"island\\" in the host genome that includes phage like-genes." [GOC:jl]	45895	\N	\N	sequence	0	SO	cryptic_prophage	cryptic_prophage
SO:0000772	SO:0001007	\N	"A genomic island is an integrated mobile genetic element, characterized by size (over 10 Kb). It that has features that suggest a foreign origin. These can include nucleotide distribution (oligonucleotides signature, CG content etc.) that differs from the bulk of the chromosome and/or genes suggesting DNA mobility." [Phigo:at, SO:ke]	SO:0001007	"A remnant of an integrated prophage in the host genome or an \\"island\\" in the host genome that includes phage like-genes." [GOC:jl]	490594	\N	\N	sequence	1	SO	genomic_island	cryptic_prophage
SO:0001039	SO:0000772	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0001007	"A remnant of an integrated prophage in the host genome or an \\"island\\" in the host genome that includes phage like-genes." [GOC:jl]	1073118	\N	SOFA	sequence	2	SO	integrated_mobile_genetic_element	cryptic_prophage
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0001007	"A remnant of an integrated prophage in the host genome or an \\"island\\" in the host genome that includes phage like-genes." [GOC:jl]	1904170	SOFA	SOFA	sequence	3	SO	mobile_genetic_element	cryptic_prophage
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001007	"A remnant of an integrated prophage in the host genome or an \\"island\\" in the host genome that includes phage like-genes." [GOC:jl]	2928601	SOFA	SOFA	sequence	4	SO	biological_region	cryptic_prophage
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001007	"A remnant of an integrated prophage in the host genome or an \\"island\\" in the host genome that includes phage like-genes." [GOC:jl]	4001862	SOFA	SOFA	sequence	5	SO	region	cryptic_prophage
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001007	"A remnant of an integrated prophage in the host genome or an \\"island\\" in the host genome that includes phage like-genes." [GOC:jl]	4966298	SOFA	SOFA	sequence	6	SO	sequence_feature	cryptic_prophage
SO:0001008	\N	\N	"A base-paired stem with loop of 4 non-hydrogen bonded nucleotides." [SO:ke]	SO:0001008	"A base-paired stem with loop of 4 non-hydrogen bonded nucleotides." [SO:ke]	45896	\N	\N	sequence	0	SO	tetraloop	tetraloop
SO:0000313	SO:0001008	\N	"A double-helical region of nucleic acid formed by base-pairing between adjacent (inverted) complementary sequences." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001008	"A base-paired stem with loop of 4 non-hydrogen bonded nucleotides." [SO:ke]	490595	\N	\N	sequence	1	SO	stem_loop	tetraloop
SO:0000122	SO:0000313	\N	"A folded RNA sequence." [SO:ke]	SO:0001008	"A base-paired stem with loop of 4 non-hydrogen bonded nucleotides." [SO:ke]	1073119	\N	\N	sequence	2	SO	RNA_sequence_secondary_structure	tetraloop
SO:0000002	SO:0000122	\N	"A folded sequence." [SO:ke]	SO:0001008	"A base-paired stem with loop of 4 non-hydrogen bonded nucleotides." [SO:ke]	1904171	\N	\N	sequence	3	SO	sequence_secondary_structure	tetraloop
SO:0001411	SO:0000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001008	"A base-paired stem with loop of 4 non-hydrogen bonded nucleotides." [SO:ke]	2928602	\N	SOFA	sequence	4	SO	biological_region	tetraloop
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001008	"A base-paired stem with loop of 4 non-hydrogen bonded nucleotides." [SO:ke]	4001863	SOFA	SOFA	sequence	5	SO	region	tetraloop
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001008	"A base-paired stem with loop of 4 non-hydrogen bonded nucleotides." [SO:ke]	4966299	SOFA	SOFA	sequence	6	SO	sequence_feature	tetraloop
SO:0001009	\N	\N	"A double-stranded DNA used to control macromolecular structure and function." [http:/www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=search&db=pubmed&term=SILVERMAN+SK[au\\]&dispmax=50]	SO:0001009	"A double-stranded DNA used to control macromolecular structure and function." [http:/www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=search&db=pubmed&term=SILVERMAN+SK[au\\]&dispmax=50]	45897	\N	\N	sequence	0	SO	DNA_constraint_sequence	DNA_constraint_sequence
SO:0000442	SO:0001009	\N	"A double stranded oligonucleotide." [SO:ke]	SO:0001009	"A double-stranded DNA used to control macromolecular structure and function." [http:/www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=search&db=pubmed&term=SILVERMAN+SK[au\\]&dispmax=50]	490596	\N	SOFA	sequence	1	SO	ds_oligo	DNA_constraint_sequence
SO:0000696	SO:0000442	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0001009	"A double-stranded DNA used to control macromolecular structure and function." [http:/www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=search&db=pubmed&term=SILVERMAN+SK[au\\]&dispmax=50]	1073120	SOFA	SOFA	sequence	2	SO	oligo	DNA_constraint_sequence
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0001009	"A double-stranded DNA used to control macromolecular structure and function." [http:/www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=search&db=pubmed&term=SILVERMAN+SK[au\\]&dispmax=50]	1904172	SOFA	SOFA	sequence	3	SO	reagent	DNA_constraint_sequence
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001009	"A double-stranded DNA used to control macromolecular structure and function." [http:/www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=search&db=pubmed&term=SILVERMAN+SK[au\\]&dispmax=50]	2928603	SOFA	SOFA	sequence	4	SO	biomaterial_region	DNA_constraint_sequence
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001009	"A double-stranded DNA used to control macromolecular structure and function." [http:/www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=search&db=pubmed&term=SILVERMAN+SK[au\\]&dispmax=50]	4001864	SOFA	SOFA	sequence	5	SO	region	DNA_constraint_sequence
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001009	"A double-stranded DNA used to control macromolecular structure and function." [http:/www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=search&db=pubmed&term=SILVERMAN+SK[au\\]&dispmax=50]	4966300	SOFA	SOFA	sequence	6	SO	sequence_feature	DNA_constraint_sequence
SO:0001010	\N	\N	"A cytosine rich domain whereby strands associate both inter- and intramolecularly at moderately acidic pH." [PMID:9753739]	SO:0001010	"A cytosine rich domain whereby strands associate both inter- and intramolecularly at moderately acidic pH." [PMID:9753739]	45898	\N	\N	sequence	0	SO	i_motif	i_motif
SO:0000142	SO:0001010	\N	"A folded DNA sequence." [SO:ke]	SO:0001010	"A cytosine rich domain whereby strands associate both inter- and intramolecularly at moderately acidic pH." [PMID:9753739]	490597	\N	\N	sequence	1	SO	DNA_sequence_secondary_structure	i_motif
SO:0000002	SO:0000142	\N	"A folded sequence." [SO:ke]	SO:0001010	"A cytosine rich domain whereby strands associate both inter- and intramolecularly at moderately acidic pH." [PMID:9753739]	1073121	\N	\N	sequence	2	SO	sequence_secondary_structure	i_motif
SO:0001411	SO:0000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001010	"A cytosine rich domain whereby strands associate both inter- and intramolecularly at moderately acidic pH." [PMID:9753739]	1904173	\N	SOFA	sequence	3	SO	biological_region	i_motif
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001010	"A cytosine rich domain whereby strands associate both inter- and intramolecularly at moderately acidic pH." [PMID:9753739]	2928604	SOFA	SOFA	sequence	4	SO	region	i_motif
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001010	"A cytosine rich domain whereby strands associate both inter- and intramolecularly at moderately acidic pH." [PMID:9753739]	4001865	SOFA	SOFA	sequence	5	SO	sequence_feature	i_motif
SO:0001011	\N	\N	"Peptide nucleic acid, is a chemical not known to occur naturally but is artificially synthesized and used in some biological research and medical treatments. The PNA backbone is composed of repeating N-(2-aminoethyl)-glycine units linked by peptide bonds. The purine and pyrimidine bases are linked to the backbone by methylene carbonyl bonds." [SO:ke]	SO:0001011	"Peptide nucleic acid, is a chemical not known to occur naturally but is artificially synthesized and used in some biological research and medical treatments. The PNA backbone is composed of repeating N-(2-aminoethyl)-glycine units linked by peptide bonds. The purine and pyrimidine bases are linked to the backbone by methylene carbonyl bonds." [SO:ke]	45899	\N	\N	sequence	0	SO	PNA_oligo	PNA_oligo
SO:0001247	SO:0001011	\N	"An oligo composed of synthetic nucleotides." [SO:ke]	SO:0001011	"Peptide nucleic acid, is a chemical not known to occur naturally but is artificially synthesized and used in some biological research and medical treatments. The PNA backbone is composed of repeating N-(2-aminoethyl)-glycine units linked by peptide bonds. The purine and pyrimidine bases are linked to the backbone by methylene carbonyl bonds." [SO:ke]	490598	\N	\N	sequence	1	SO	synthetic_oligo	PNA_oligo
SO:0000696	SO:0001247	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0001011	"Peptide nucleic acid, is a chemical not known to occur naturally but is artificially synthesized and used in some biological research and medical treatments. The PNA backbone is composed of repeating N-(2-aminoethyl)-glycine units linked by peptide bonds. The purine and pyrimidine bases are linked to the backbone by methylene carbonyl bonds." [SO:ke]	1073122	\N	SOFA	sequence	2	SO	oligo	PNA_oligo
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0001011	"Peptide nucleic acid, is a chemical not known to occur naturally but is artificially synthesized and used in some biological research and medical treatments. The PNA backbone is composed of repeating N-(2-aminoethyl)-glycine units linked by peptide bonds. The purine and pyrimidine bases are linked to the backbone by methylene carbonyl bonds." [SO:ke]	1904174	SOFA	SOFA	sequence	3	SO	reagent	PNA_oligo
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001011	"Peptide nucleic acid, is a chemical not known to occur naturally but is artificially synthesized and used in some biological research and medical treatments. The PNA backbone is composed of repeating N-(2-aminoethyl)-glycine units linked by peptide bonds. The purine and pyrimidine bases are linked to the backbone by methylene carbonyl bonds." [SO:ke]	2928605	SOFA	SOFA	sequence	4	SO	biomaterial_region	PNA_oligo
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001011	"Peptide nucleic acid, is a chemical not known to occur naturally but is artificially synthesized and used in some biological research and medical treatments. The PNA backbone is composed of repeating N-(2-aminoethyl)-glycine units linked by peptide bonds. The purine and pyrimidine bases are linked to the backbone by methylene carbonyl bonds." [SO:ke]	4001866	SOFA	SOFA	sequence	5	SO	region	PNA_oligo
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001011	"Peptide nucleic acid, is a chemical not known to occur naturally but is artificially synthesized and used in some biological research and medical treatments. The PNA backbone is composed of repeating N-(2-aminoethyl)-glycine units linked by peptide bonds. The purine and pyrimidine bases are linked to the backbone by methylene carbonyl bonds." [SO:ke]	4966301	SOFA	SOFA	sequence	6	SO	sequence_feature	PNA_oligo
SO:0001012	\N	\N	"A DNA sequence with catalytic activity." [SO:cb]	SO:0001012	"A DNA sequence with catalytic activity." [SO:cb]	45900	\N	\N	sequence	0	SO	DNAzyme	DNAzyme
SO:0000696	SO:0001012	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0001012	"A DNA sequence with catalytic activity." [SO:cb]	490599	\N	SOFA	sequence	1	SO	oligo	DNAzyme
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0001012	"A DNA sequence with catalytic activity." [SO:cb]	1073123	SOFA	SOFA	sequence	2	SO	reagent	DNAzyme
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001012	"A DNA sequence with catalytic activity." [SO:cb]	1904175	SOFA	SOFA	sequence	3	SO	biomaterial_region	DNAzyme
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001012	"A DNA sequence with catalytic activity." [SO:cb]	2928606	SOFA	SOFA	sequence	4	SO	region	DNAzyme
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001012	"A DNA sequence with catalytic activity." [SO:cb]	4001867	SOFA	SOFA	sequence	5	SO	sequence_feature	DNAzyme
SO:0001013	\N	\N	"A multiple nucleotide polymorphism with alleles of common length > 1, for example AAA/TTT." [http://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?rs=rs2067431]	SO:0001013	"A multiple nucleotide polymorphism with alleles of common length > 1, for example AAA/TTT." [http://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?rs=rs2067431]	45901	\N	\N	sequence	0	SO	MNP	MNP
SO:0002007	SO:0001013	\N	"An MNV is a multiple nucleotide variant (substitution) in which the inserted sequence is the same length as the replaced sequence." [NCBI:th]	SO:0001013	"A multiple nucleotide polymorphism with alleles of common length > 1, for example AAA/TTT." [http://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?rs=rs2067431]	490600	\N	\N	sequence	1	SO	MNV	MNP
SO:1000002	SO:0002007	\N	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	SO:0001013	"A multiple nucleotide polymorphism with alleles of common length > 1, for example AAA/TTT." [http://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?rs=rs2067431]	1073124	\N	SOFA	sequence	2	SO	substitution	MNP
SO:0001059	SO:1000002	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0001013	"A multiple nucleotide polymorphism with alleles of common length > 1, for example AAA/TTT." [http://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?rs=rs2067431]	1904176	SOFA	SOFA	sequence	3	SO	sequence_alteration	MNP
SO:0001411	SO:1000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001013	"A multiple nucleotide polymorphism with alleles of common length > 1, for example AAA/TTT." [http://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?rs=rs2067431]	1904177	SOFA	SOFA	sequence	3	SO	biological_region	MNP
SO:0002072	SO:0001059	\N	"" []	SO:0001013	"A multiple nucleotide polymorphism with alleles of common length > 1, for example AAA/TTT." [http://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?rs=rs2067431]	2928607	SOFA	\N	sequence	4	SO	sequence_comparison	MNP
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001013	"A multiple nucleotide polymorphism with alleles of common length > 1, for example AAA/TTT." [http://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?rs=rs2067431]	2928608	SOFA	SOFA	sequence	4	SO	region	MNP
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001013	"A multiple nucleotide polymorphism with alleles of common length > 1, for example AAA/TTT." [http://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?rs=rs2067431]	4001868	\N	SOFA	sequence	5	SO	sequence_feature	MNP
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001013	"A multiple nucleotide polymorphism with alleles of common length > 1, for example AAA/TTT." [http://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?rs=rs2067431]	4001869	SOFA	SOFA	sequence	5	SO	sequence_feature	MNP
SO:0001014	\N	\N	"" []	SO:0001014	"" []	45902	\N	\N	sequence	0	SO	intron_domain	intron_domain
SO:0000188	SO:0001014	\N	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001014	"" []	490601	\N	SOFA	sequence	1	SO	intron	intron_domain
SO:0000835	SO:0001014	\N	"A part of a primary transcript." [SO:ke]	SO:0001014	"" []	490602	\N	SOFA	sequence	1	SO	primary_transcript_region	intron_domain
SO:0000835	SO:0000188	\N	"A part of a primary transcript." [SO:ke]	SO:0001014	"" []	1073125	SOFA	SOFA	sequence	2	SO	primary_transcript_region	intron_domain
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001014	"" []	1904178	SOFA	SOFA	sequence	3	SO	primary_transcript	intron_domain
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0001014	"" []	1904179	SOFA	SOFA	sequence	3	SO	transcript_region	intron_domain
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001014	"" []	2018229	SOFA	SOFA	sequence	4	SO	transcript	intron_domain
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001014	"" []	2018230	SOFA	SOFA	sequence	4	SO	transcript	intron_domain
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001014	"" []	2018231	SOFA	SOFA	sequence	4	SO	biological_region	intron_domain
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001014	"" []	3173915	SOFA	SOFA	sequence	5	SO	gene_member_region	intron_domain
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001014	"" []	5407429	SOFA	SOFA	sequence	7	SO	region	intron_domain
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001014	"" []	4385766	SOFA	SOFA	sequence	6	SO	biological_region	intron_domain
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001014	"" []	5876440	SOFA	SOFA	sequence	8	SO	sequence_feature	intron_domain
SO:0001015	\N	\N	"A type of non-canonical base pairing, most commonly between G and U, which is important for the secondary structure of RNAs. It has similar thermodynamic stability to the Watson-Crick pairing. Wobble base pairs only have two hydrogen bonds. Other wobble base pair possibilities are I-A, I-U and I-C." [PMID:11256617]	SO:0001015	"A type of non-canonical base pairing, most commonly between G and U, which is important for the secondary structure of RNAs. It has similar thermodynamic stability to the Watson-Crick pairing. Wobble base pairs only have two hydrogen bonds. Other wobble base pair possibilities are I-A, I-U and I-C." [PMID:11256617]	45903	\N	\N	sequence	0	SO	wobble_base_pair	wobble_base_pair
SO:0000028	SO:0001015	\N	"" []	SO:0001015	"A type of non-canonical base pairing, most commonly between G and U, which is important for the secondary structure of RNAs. It has similar thermodynamic stability to the Watson-Crick pairing. Wobble base pairs only have two hydrogen bonds. Other wobble base pair possibilities are I-A, I-U and I-C." [PMID:11256617]	490603	\N	\N	sequence	1	SO	base_pair	wobble_base_pair
SO:0000002	SO:0000028	\N	"A folded sequence." [SO:ke]	SO:0001015	"A type of non-canonical base pairing, most commonly between G and U, which is important for the secondary structure of RNAs. It has similar thermodynamic stability to the Watson-Crick pairing. Wobble base pairs only have two hydrogen bonds. Other wobble base pair possibilities are I-A, I-U and I-C." [PMID:11256617]	1073128	\N	\N	sequence	2	SO	sequence_secondary_structure	wobble_base_pair
SO:0001411	SO:0000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001015	"A type of non-canonical base pairing, most commonly between G and U, which is important for the secondary structure of RNAs. It has similar thermodynamic stability to the Watson-Crick pairing. Wobble base pairs only have two hydrogen bonds. Other wobble base pair possibilities are I-A, I-U and I-C." [PMID:11256617]	1904183	\N	SOFA	sequence	3	SO	biological_region	wobble_base_pair
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001015	"A type of non-canonical base pairing, most commonly between G and U, which is important for the secondary structure of RNAs. It has similar thermodynamic stability to the Watson-Crick pairing. Wobble base pairs only have two hydrogen bonds. Other wobble base pair possibilities are I-A, I-U and I-C." [PMID:11256617]	2928611	SOFA	SOFA	sequence	4	SO	region	wobble_base_pair
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001015	"A type of non-canonical base pairing, most commonly between G and U, which is important for the secondary structure of RNAs. It has similar thermodynamic stability to the Watson-Crick pairing. Wobble base pairs only have two hydrogen bonds. Other wobble base pair possibilities are I-A, I-U and I-C." [PMID:11256617]	4001872	SOFA	SOFA	sequence	5	SO	sequence_feature	wobble_base_pair
SO:0001016	\N	\N	"A purine-rich sequence in the group I introns which determines the locations of the splice sites in group I intron splicing and has catalytic activity." [SO:cb]	SO:0001016	"A purine-rich sequence in the group I introns which determines the locations of the splice sites in group I intron splicing and has catalytic activity." [SO:cb]	45904	\N	\N	sequence	0	SO	internal_guide_sequence	internal_guide_sequence
SO:0000587	SO:0001016	\N	"Group I catalytic introns are large self-splicing ribozymes. They catalyze their own excision from mRNA, tRNA and rRNA precursors in a wide range of organisms. The core secondary structure consists of 9 paired regions (P1-P9). These fold to essentially two domains, the P4-P6 domain (formed from the stacking of P5, P4, P6 and P6a helices) and the P3-P9 domain (formed from the P8, P3, P7 and P9 helices). Group I catalytic introns often have long ORFs inserted in loop regions." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00028]	SO:0001016	"A purine-rich sequence in the group I introns which determines the locations of the splice sites in group I intron splicing and has catalytic activity." [SO:cb]	490604	\N	SOFA	sequence	1	SO	group_I_intron	internal_guide_sequence
SO:0001014	SO:0001016	\N	"" []	SO:0001016	"A purine-rich sequence in the group I introns which determines the locations of the splice sites in group I intron splicing and has catalytic activity." [SO:cb]	490605	\N	\N	sequence	1	SO	intron_domain	internal_guide_sequence
SO:0000588	SO:0000587	\N	"A self spliced intron." [SO:ke]	SO:0001016	"A purine-rich sequence in the group I introns which determines the locations of the splice sites in group I intron splicing and has catalytic activity." [SO:cb]	1073129	SOFA	SOFA	sequence	2	SO	autocatalytically_spliced_intron	internal_guide_sequence
SO:0000188	SO:0001014	\N	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001016	"A purine-rich sequence in the group I introns which determines the locations of the splice sites in group I intron splicing and has catalytic activity." [SO:cb]	1073130	\N	SOFA	sequence	2	SO	intron	internal_guide_sequence
SO:0000835	SO:0001014	\N	"A part of a primary transcript." [SO:ke]	SO:0001016	"A purine-rich sequence in the group I introns which determines the locations of the splice sites in group I intron splicing and has catalytic activity." [SO:cb]	1073131	\N	SOFA	sequence	2	SO	primary_transcript_region	internal_guide_sequence
SO:0000188	SO:0000588	\N	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001016	"A purine-rich sequence in the group I introns which determines the locations of the splice sites in group I intron splicing and has catalytic activity." [SO:cb]	1904184	SOFA	SOFA	sequence	3	SO	intron	internal_guide_sequence
SO:0000835	SO:0000188	\N	"A part of a primary transcript." [SO:ke]	SO:0001016	"A purine-rich sequence in the group I introns which determines the locations of the splice sites in group I intron splicing and has catalytic activity." [SO:cb]	2928612	SOFA	SOFA	sequence	4	SO	primary_transcript_region	internal_guide_sequence
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001016	"A purine-rich sequence in the group I introns which determines the locations of the splice sites in group I intron splicing and has catalytic activity." [SO:cb]	3173917	SOFA	SOFA	sequence	5	SO	primary_transcript	internal_guide_sequence
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0001016	"A purine-rich sequence in the group I introns which determines the locations of the splice sites in group I intron splicing and has catalytic activity." [SO:cb]	3173918	SOFA	SOFA	sequence	5	SO	transcript_region	internal_guide_sequence
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001016	"A purine-rich sequence in the group I introns which determines the locations of the splice sites in group I intron splicing and has catalytic activity." [SO:cb]	4132322	SOFA	SOFA	sequence	6	SO	transcript	internal_guide_sequence
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001016	"A purine-rich sequence in the group I introns which determines the locations of the splice sites in group I intron splicing and has catalytic activity." [SO:cb]	4132323	SOFA	SOFA	sequence	6	SO	transcript	internal_guide_sequence
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001016	"A purine-rich sequence in the group I introns which determines the locations of the splice sites in group I intron splicing and has catalytic activity." [SO:cb]	4132324	SOFA	SOFA	sequence	6	SO	biological_region	internal_guide_sequence
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001016	"A purine-rich sequence in the group I introns which determines the locations of the splice sites in group I intron splicing and has catalytic activity." [SO:cb]	5180715	SOFA	SOFA	sequence	7	SO	gene_member_region	internal_guide_sequence
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001016	"A purine-rich sequence in the group I introns which determines the locations of the splice sites in group I intron splicing and has catalytic activity." [SO:cb]	6550272	SOFA	SOFA	sequence	9	SO	region	internal_guide_sequence
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001016	"A purine-rich sequence in the group I introns which determines the locations of the splice sites in group I intron splicing and has catalytic activity." [SO:cb]	5996415	SOFA	SOFA	sequence	8	SO	biological_region	internal_guide_sequence
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001016	"A purine-rich sequence in the group I introns which determines the locations of the splice sites in group I intron splicing and has catalytic activity." [SO:cb]	6807581	SOFA	SOFA	sequence	10	SO	sequence_feature	internal_guide_sequence
SO:0001017	\N	\N	"A sequence variant that does not affect protein function. Silent mutations may occur in genic ( CDS, UTR, intron etc) and intergenic regions. Silent mutations may have affects on processes such as splicing and regulation." [SO:ke]	SO:0001017	"A sequence variant that does not affect protein function. Silent mutations may occur in genic ( CDS, UTR, intron etc) and intergenic regions. Silent mutations may have affects on processes such as splicing and regulation." [SO:ke]	45905	\N	\N	sequence	0	SO	silent_mutation	silent_mutation
SO:0001878	SO:0001017	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001017	"A sequence variant that does not affect protein function. Silent mutations may occur in genic ( CDS, UTR, intron etc) and intergenic regions. Silent mutations may have affects on processes such as splicing and regulation." [SO:ke]	490606	\N	\N	sequence	1	SO	feature_variant	silent_mutation
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001017	"A sequence variant that does not affect protein function. Silent mutations may occur in genic ( CDS, UTR, intron etc) and intergenic regions. Silent mutations may have affects on processes such as splicing and regulation." [SO:ke]	1073132	\N	\N	sequence	2	SO	structural_variant	silent_mutation
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001017	"A sequence variant that does not affect protein function. Silent mutations may occur in genic ( CDS, UTR, intron etc) and intergenic regions. Silent mutations may have affects on processes such as splicing and regulation." [SO:ke]	1904188	\N	\N	sequence	3	SO	sequence_variant	silent_mutation
SO:0001018	\N	\N	"A binding site that, in the molecule, interacts selectively and non-covalently with antibodies, B cells or T cells." [http://en.wikipedia.org/wiki/Epitope, SO:cb]	SO:0001018	"A binding site that, in the molecule, interacts selectively and non-covalently with antibodies, B cells or T cells." [http://en.wikipedia.org/wiki/Epitope, SO:cb]	45906	\N	\N	sequence	0	SO	epitope	epitope
SO:0000409	SO:0001018	\N	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0001018	"A binding site that, in the molecule, interacts selectively and non-covalently with antibodies, B cells or T cells." [http://en.wikipedia.org/wiki/Epitope, SO:cb]	490607	\N	biosapiens,SOFA	sequence	1	SO	binding_site	epitope
SO:0001411	SO:0000409	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001018	"A binding site that, in the molecule, interacts selectively and non-covalently with antibodies, B cells or T cells." [http://en.wikipedia.org/wiki/Epitope, SO:cb]	1073133	biosapiens,SOFA	SOFA	sequence	2	SO	biological_region	epitope
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001018	"A binding site that, in the molecule, interacts selectively and non-covalently with antibodies, B cells or T cells." [http://en.wikipedia.org/wiki/Epitope, SO:cb]	1904189	SOFA	SOFA	sequence	3	SO	region	epitope
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001018	"A binding site that, in the molecule, interacts selectively and non-covalently with antibodies, B cells or T cells." [http://en.wikipedia.org/wiki/Epitope, SO:cb]	2928618	SOFA	SOFA	sequence	4	SO	sequence_feature	epitope
SO:0001019	\N	SOFA	"A variation that increases or decreases the copy number of a given region." [SO:ke]	SO:0001019	"A variation that increases or decreases the copy number of a given region." [SO:ke]	45907	\N	SOFA	sequence	0	SO	copy_number_variation	copy_number_variation
SO:0000248	SO:0001019	SOFA	"A kind of kind of sequence alteration where the copies of a region present varies across a population." [SO:ke]	SO:0001019	"A variation that increases or decreases the copy number of a given region." [SO:ke]	490608	SOFA	\N	sequence	1	SO	sequence_length_alteration	copy_number_variation
SO:0001059	SO:0000248	SOFA	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0001019	"A variation that increases or decreases the copy number of a given region." [SO:ke]	1073134	\N	SOFA	sequence	2	SO	sequence_alteration	copy_number_variation
SO:0002072	SO:0001059	SOFA	"" []	SO:0001019	"A variation that increases or decreases the copy number of a given region." [SO:ke]	1904190	SOFA	\N	sequence	3	SO	sequence_comparison	copy_number_variation
SO:0000110	SO:0002072	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001019	"A variation that increases or decreases the copy number of a given region." [SO:ke]	2928619	\N	SOFA	sequence	4	SO	sequence_feature	copy_number_variation
SO:0001021	\N	\N	"" []	SO:0001021	"" []	45908	\N	\N	sequence	0	SO	chromosome_breakpoint	chromosome_breakpoint
SO:0000340	SO:0001021	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0001021	"" []	490609	\N	SOFA	sequence	1	SO	chromosome	chromosome_breakpoint
SO:0000699	SO:0001021	\N	"A sequence_feature with an extent of zero." [SO:ke]	SO:0001021	"" []	490610	\N	SOFA	sequence	1	SO	junction	chromosome_breakpoint
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001021	"" []	1073135	SOFA	SOFA	sequence	2	SO	replicon	chromosome_breakpoint
SO:0000110	SO:0000699	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001021	"" []	1073136	SOFA	SOFA	sequence	2	SO	sequence_feature	chromosome_breakpoint
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001021	"" []	1904191	SOFA	SOFA	sequence	3	SO	biological_region	chromosome_breakpoint
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001021	"" []	2928620	SOFA	SOFA	sequence	4	SO	region	chromosome_breakpoint
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001021	"" []	4001875	SOFA	SOFA	sequence	5	SO	sequence_feature	chromosome_breakpoint
SO:0001022	\N	\N	"The point within a chromosome where an inversion begins or ends." [SO:cb]	SO:0001022	"The point within a chromosome where an inversion begins or ends." [SO:cb]	45909	\N	\N	sequence	0	SO	inversion_breakpoint	inversion_breakpoint
SO:0001021	SO:0001022	\N	"" []	SO:0001022	"The point within a chromosome where an inversion begins or ends." [SO:cb]	490611	\N	\N	sequence	1	SO	chromosome_breakpoint	inversion_breakpoint
SO:0000340	SO:0001021	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0001022	"The point within a chromosome where an inversion begins or ends." [SO:cb]	1073137	\N	SOFA	sequence	2	SO	chromosome	inversion_breakpoint
SO:0000699	SO:0001021	\N	"A sequence_feature with an extent of zero." [SO:ke]	SO:0001022	"The point within a chromosome where an inversion begins or ends." [SO:cb]	1073138	\N	SOFA	sequence	2	SO	junction	inversion_breakpoint
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001022	"The point within a chromosome where an inversion begins or ends." [SO:cb]	1904192	SOFA	SOFA	sequence	3	SO	replicon	inversion_breakpoint
SO:0000110	SO:0000699	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001022	"The point within a chromosome where an inversion begins or ends." [SO:cb]	1904193	SOFA	SOFA	sequence	3	SO	sequence_feature	inversion_breakpoint
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001022	"The point within a chromosome where an inversion begins or ends." [SO:cb]	2928621	SOFA	SOFA	sequence	4	SO	biological_region	inversion_breakpoint
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001022	"The point within a chromosome where an inversion begins or ends." [SO:cb]	4001876	SOFA	SOFA	sequence	5	SO	region	inversion_breakpoint
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001022	"The point within a chromosome where an inversion begins or ends." [SO:cb]	4966305	SOFA	SOFA	sequence	6	SO	sequence_feature	inversion_breakpoint
SO:0001023	\N	\N	"An allele is one of a set of coexisting sequence variants of a gene." [SO:immuno_workshop]	SO:0001023	"An allele is one of a set of coexisting sequence variants of a gene." [SO:immuno_workshop]	45910	\N	\N	sequence	0	SO	allele	allele
SO:0001507	SO:0001023	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0001023	"An allele is one of a set of coexisting sequence variants of a gene." [SO:immuno_workshop]	490612	\N	\N	sequence	1	SO	variant_collection	allele
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0001023	"An allele is one of a set of coexisting sequence variants of a gene." [SO:immuno_workshop]	1073139	\N	\N	sequence	2	SO	sequence_collection	allele
SO:0001024	\N	\N	"A haplotype is one of a set of coexisting sequence variants of a haplotype block." [SO:immuno_workshop]	SO:0001024	"A haplotype is one of a set of coexisting sequence variants of a haplotype block." [SO:immuno_workshop]	45911	\N	\N	sequence	0	SO	haplotype	haplotype
SO:0001507	SO:0001024	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0001024	"A haplotype is one of a set of coexisting sequence variants of a haplotype block." [SO:immuno_workshop]	490613	\N	\N	sequence	1	SO	variant_collection	haplotype
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0001024	"A haplotype is one of a set of coexisting sequence variants of a haplotype block." [SO:immuno_workshop]	1073140	\N	\N	sequence	2	SO	sequence_collection	haplotype
SO:0001025	\N	\N	"A sequence variant that is segregating in one or more natural populations of a species." [SO:immuno_workshop]	SO:0001025	"A sequence variant that is segregating in one or more natural populations of a species." [SO:immuno_workshop]	45912	\N	\N	sequence	0	SO	polymorphic_sequence_variant	polymorphic_sequence_variant
SO:0001023	SO:0001025	\N	"An allele is one of a set of coexisting sequence variants of a gene." [SO:immuno_workshop]	SO:0001025	"A sequence variant that is segregating in one or more natural populations of a species." [SO:immuno_workshop]	490614	\N	\N	sequence	1	SO	allele	polymorphic_sequence_variant
SO:0001507	SO:0001023	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0001025	"A sequence variant that is segregating in one or more natural populations of a species." [SO:immuno_workshop]	1073141	\N	\N	sequence	2	SO	variant_collection	polymorphic_sequence_variant
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0001025	"A sequence variant that is segregating in one or more natural populations of a species." [SO:immuno_workshop]	1904194	\N	\N	sequence	3	SO	sequence_collection	polymorphic_sequence_variant
SO:0001026	\N	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0001026	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	45913	\N	\N	sequence	0	SO	genome	genome
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0001026	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	490615	\N	\N	sequence	1	SO	sequence_collection	genome
SO:0001027	\N	\N	"A genotype is a variant genome, complete or incomplete." [SO:immuno_workshop]	SO:0001027	"A genotype is a variant genome, complete or incomplete." [SO:immuno_workshop]	45914	\N	\N	sequence	0	SO	genotype	genotype
SO:0001507	SO:0001027	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0001027	"A genotype is a variant genome, complete or incomplete." [SO:immuno_workshop]	490616	\N	\N	sequence	1	SO	variant_collection	genotype
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0001027	"A genotype is a variant genome, complete or incomplete." [SO:immuno_workshop]	1073142	\N	\N	sequence	2	SO	sequence_collection	genotype
SO:0001028	\N	\N	"A diplotype is a pair of haplotypes from a given individual. It is a genotype where the phase is known." [SO:immuno_workshop]	SO:0001028	"A diplotype is a pair of haplotypes from a given individual. It is a genotype where the phase is known." [SO:immuno_workshop]	45915	\N	\N	sequence	0	SO	diplotype	diplotype
SO:0001507	SO:0001028	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0001028	"A diplotype is a pair of haplotypes from a given individual. It is a genotype where the phase is known." [SO:immuno_workshop]	490617	\N	\N	sequence	1	SO	variant_collection	diplotype
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0001028	"A diplotype is a pair of haplotypes from a given individual. It is a genotype where the phase is known." [SO:immuno_workshop]	1073143	\N	\N	sequence	2	SO	sequence_collection	diplotype
SO:0001029	\N	\N	"" []	SO:0001029	"" []	45916	\N	\N	sequence	0	SO	direction_attribute	direction_attribute
SO:0000733	SO:0001029	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001029	"" []	490618	\N	\N	sequence	1	SO	feature_attribute	direction_attribute
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001029	"" []	1073144	\N	\N	sequence	2	SO	sequence_attribute	direction_attribute
SO:0001030	\N	\N	"Forward is an attribute of the feature, where the feature is in the 5' to 3' direction." [SO:ke]	SO:0001030	"Forward is an attribute of the feature, where the feature is in the 5' to 3' direction." [SO:ke]	45917	\N	\N	sequence	0	SO	forward	forward
SO:0001029	SO:0001030	\N	"" []	SO:0001030	"Forward is an attribute of the feature, where the feature is in the 5' to 3' direction." [SO:ke]	490619	\N	\N	sequence	1	SO	direction_attribute	forward
SO:0000733	SO:0001029	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001030	"Forward is an attribute of the feature, where the feature is in the 5' to 3' direction." [SO:ke]	1073145	\N	\N	sequence	2	SO	feature_attribute	forward
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001030	"Forward is an attribute of the feature, where the feature is in the 5' to 3' direction." [SO:ke]	1904195	\N	\N	sequence	3	SO	sequence_attribute	forward
SO:0001031	\N	\N	"Reverse is an attribute of the feature, where the feature is in the 3' to 5' direction. Again could be applied to primer." [SO:ke]	SO:0001031	"Reverse is an attribute of the feature, where the feature is in the 3' to 5' direction. Again could be applied to primer." [SO:ke]	45918	\N	\N	sequence	0	SO	reverse	reverse
SO:0001029	SO:0001031	\N	"" []	SO:0001031	"Reverse is an attribute of the feature, where the feature is in the 3' to 5' direction. Again could be applied to primer." [SO:ke]	490620	\N	\N	sequence	1	SO	direction_attribute	reverse
SO:0000733	SO:0001029	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001031	"Reverse is an attribute of the feature, where the feature is in the 3' to 5' direction. Again could be applied to primer." [SO:ke]	1073146	\N	\N	sequence	2	SO	feature_attribute	reverse
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001031	"Reverse is an attribute of the feature, where the feature is in the 3' to 5' direction. Again could be applied to primer." [SO:ke]	1904196	\N	\N	sequence	3	SO	sequence_attribute	reverse
SO:0001032	\N	\N	"" []	SO:0001032	"" []	45919	\N	\N	sequence	0	SO	mitochondrial_DNA	mitochondrial_DNA
SO:0000737	SO:0001032	\N	"" []	SO:0001032	"" []	490621	\N	\N	sequence	1	SO	mitochondrial_sequence	mitochondrial_DNA
SO:0000736	SO:0000737	\N	"" []	SO:0001032	"" []	1073147	\N	\N	sequence	2	SO	organelle_sequence	mitochondrial_DNA
SO:0000735	SO:0000736	\N	"" []	SO:0001032	"" []	1904197	\N	\N	sequence	3	SO	sequence_location	mitochondrial_DNA
SO:0000400	SO:0000735	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001032	"" []	2928622	\N	\N	sequence	4	SO	sequence_attribute	mitochondrial_DNA
SO:0001033	\N	\N	"" []	SO:0001033	"" []	45920	\N	\N	sequence	0	SO	chloroplast_DNA	chloroplast_DNA
SO:0000745	SO:0001033	\N	"" []	SO:0001033	"" []	490622	\N	\N	sequence	1	SO	chloroplast_sequence	chloroplast_DNA
SO:0000740	SO:0000745	\N	"" []	SO:0001033	"" []	1073148	\N	\N	sequence	2	SO	plastid_sequence	chloroplast_DNA
SO:0000736	SO:0000740	\N	"" []	SO:0001033	"" []	1904198	\N	\N	sequence	3	SO	organelle_sequence	chloroplast_DNA
SO:0000735	SO:0000736	\N	"" []	SO:0001033	"" []	2928623	\N	\N	sequence	4	SO	sequence_location	chloroplast_DNA
SO:0000400	SO:0000735	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001033	"" []	4001877	\N	\N	sequence	5	SO	sequence_attribute	chloroplast_DNA
SO:0001034	\N	\N	"A de-branched intron which mimics the structure of pre-miRNA and enters the miRNA processing pathway without Drosha mediated cleavage." [PMID:17589500, SO:ma]	SO:0001034	"A de-branched intron which mimics the structure of pre-miRNA and enters the miRNA processing pathway without Drosha mediated cleavage." [PMID:17589500, SO:ma]	45921	\N	\N	sequence	0	SO	miRtron	miRtron
SO:0001014	SO:0001034	\N	"" []	SO:0001034	"A de-branched intron which mimics the structure of pre-miRNA and enters the miRNA processing pathway without Drosha mediated cleavage." [PMID:17589500, SO:ma]	490623	\N	\N	sequence	1	SO	intron_domain	miRtron
SO:0000188	SO:0001014	\N	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001034	"A de-branched intron which mimics the structure of pre-miRNA and enters the miRNA processing pathway without Drosha mediated cleavage." [PMID:17589500, SO:ma]	1073149	\N	SOFA	sequence	2	SO	intron	miRtron
SO:0000835	SO:0001014	\N	"A part of a primary transcript." [SO:ke]	SO:0001034	"A de-branched intron which mimics the structure of pre-miRNA and enters the miRNA processing pathway without Drosha mediated cleavage." [PMID:17589500, SO:ma]	1073150	\N	SOFA	sequence	2	SO	primary_transcript_region	miRtron
SO:0000835	SO:0000188	\N	"A part of a primary transcript." [SO:ke]	SO:0001034	"A de-branched intron which mimics the structure of pre-miRNA and enters the miRNA processing pathway without Drosha mediated cleavage." [PMID:17589500, SO:ma]	1904199	SOFA	SOFA	sequence	3	SO	primary_transcript_region	miRtron
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001034	"A de-branched intron which mimics the structure of pre-miRNA and enters the miRNA processing pathway without Drosha mediated cleavage." [PMID:17589500, SO:ma]	2928624	SOFA	SOFA	sequence	4	SO	primary_transcript	miRtron
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0001034	"A de-branched intron which mimics the structure of pre-miRNA and enters the miRNA processing pathway without Drosha mediated cleavage." [PMID:17589500, SO:ma]	2928625	SOFA	SOFA	sequence	4	SO	transcript_region	miRtron
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001034	"A de-branched intron which mimics the structure of pre-miRNA and enters the miRNA processing pathway without Drosha mediated cleavage." [PMID:17589500, SO:ma]	3173922	SOFA	SOFA	sequence	5	SO	transcript	miRtron
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001034	"A de-branched intron which mimics the structure of pre-miRNA and enters the miRNA processing pathway without Drosha mediated cleavage." [PMID:17589500, SO:ma]	3173923	SOFA	SOFA	sequence	5	SO	transcript	miRtron
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001034	"A de-branched intron which mimics the structure of pre-miRNA and enters the miRNA processing pathway without Drosha mediated cleavage." [PMID:17589500, SO:ma]	3173924	SOFA	SOFA	sequence	5	SO	biological_region	miRtron
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001034	"A de-branched intron which mimics the structure of pre-miRNA and enters the miRNA processing pathway without Drosha mediated cleavage." [PMID:17589500, SO:ma]	4385770	SOFA	SOFA	sequence	6	SO	gene_member_region	miRtron
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001034	"A de-branched intron which mimics the structure of pre-miRNA and enters the miRNA processing pathway without Drosha mediated cleavage." [PMID:17589500, SO:ma]	6146650	SOFA	SOFA	sequence	8	SO	region	miRtron
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001034	"A de-branched intron which mimics the structure of pre-miRNA and enters the miRNA processing pathway without Drosha mediated cleavage." [PMID:17589500, SO:ma]	5407432	SOFA	SOFA	sequence	7	SO	biological_region	miRtron
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001034	"A de-branched intron which mimics the structure of pre-miRNA and enters the miRNA processing pathway without Drosha mediated cleavage." [PMID:17589500, SO:ma]	6469740	SOFA	SOFA	sequence	9	SO	sequence_feature	miRtron
SO:0001035	\N	\N	"A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements." [SO:ke]	SO:0001035	"A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements." [SO:ke]	45922	\N	\N	sequence	0	SO	piRNA	piRNA
SO:0000370	SO:0001035	\N	"A non-coding RNA less than 200 nucleotides long, usually with a specific secondary structure, that acts to regulate gene expression. These include short ncRNAs such as piRNA, miRNA and siRNAs (among others)." [PMID:28541282, PomBase:al, SO:ma]	SO:0001035	"A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements." [SO:ke]	490624	\N	SOFA	sequence	1	SO	small_regulatory_ncRNA	piRNA
SO:0000655	SO:0000370	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0001035	"A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements." [SO:ke]	1073151	SOFA	SOFA	sequence	2	SO	ncRNA	piRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001035	"A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements." [SO:ke]	1904202	SOFA	SOFA	sequence	3	SO	mature_transcript	piRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001035	"A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements." [SO:ke]	2928629	SOFA	SOFA	sequence	4	SO	transcript	piRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001035	"A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements." [SO:ke]	4001880	SOFA	SOFA	sequence	5	SO	gene_member_region	piRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001035	"A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements." [SO:ke]	4966308	SOFA	SOFA	sequence	6	SO	biological_region	piRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001035	"A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements." [SO:ke]	5741130	SOFA	SOFA	sequence	7	SO	region	piRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001035	"A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements." [SO:ke]	6311003	SOFA	SOFA	sequence	8	SO	sequence_feature	piRNA
SO:0001036	\N	\N	"A tRNA sequence that has an arginine anticodon, and a 3' arginine binding region." [SO:ke]	SO:0001036	"A tRNA sequence that has an arginine anticodon, and a 3' arginine binding region." [SO:ke]	45923	\N	\N	sequence	0	SO	arginyl_tRNA	arginyl_tRNA
SO:0000253	SO:0001036	\N	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	SO:0001036	"A tRNA sequence that has an arginine anticodon, and a 3' arginine binding region." [SO:ke]	490625	\N	SOFA	sequence	1	SO	tRNA	arginyl_tRNA
SO:0000655	SO:0000253	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0001036	"A tRNA sequence that has an arginine anticodon, and a 3' arginine binding region." [SO:ke]	1073152	SOFA	SOFA	sequence	2	SO	ncRNA	arginyl_tRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001036	"A tRNA sequence that has an arginine anticodon, and a 3' arginine binding region." [SO:ke]	1904203	SOFA	SOFA	sequence	3	SO	mature_transcript	arginyl_tRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001036	"A tRNA sequence that has an arginine anticodon, and a 3' arginine binding region." [SO:ke]	2928630	SOFA	SOFA	sequence	4	SO	transcript	arginyl_tRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001036	"A tRNA sequence that has an arginine anticodon, and a 3' arginine binding region." [SO:ke]	4001881	SOFA	SOFA	sequence	5	SO	gene_member_region	arginyl_tRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001036	"A tRNA sequence that has an arginine anticodon, and a 3' arginine binding region." [SO:ke]	4966309	SOFA	SOFA	sequence	6	SO	biological_region	arginyl_tRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001036	"A tRNA sequence that has an arginine anticodon, and a 3' arginine binding region." [SO:ke]	5741131	SOFA	SOFA	sequence	7	SO	region	arginyl_tRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001036	"A tRNA sequence that has an arginine anticodon, and a 3' arginine binding region." [SO:ke]	6311004	SOFA	SOFA	sequence	8	SO	sequence_feature	arginyl_tRNA
SO:0001037	\N	SOFA	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0001037	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	45924	\N	SOFA	sequence	0	SO	mobile_genetic_element	mobile_genetic_element
SO:0001411	SO:0001037	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001037	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	490626	SOFA	SOFA	sequence	1	SO	biological_region	mobile_genetic_element
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001037	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	1073153	SOFA	SOFA	sequence	2	SO	region	mobile_genetic_element
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001037	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	1904204	SOFA	SOFA	sequence	3	SO	sequence_feature	mobile_genetic_element
SO:0001038	\N	\N	"An MGE that is not integrated into the host chromosome." [SO:ke]	SO:0001038	"An MGE that is not integrated into the host chromosome." [SO:ke]	45925	\N	\N	sequence	0	SO	extrachromosomal_mobile_genetic_element	extrachromosomal_mobile_genetic_element
SO:0001037	SO:0001038	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0001038	"An MGE that is not integrated into the host chromosome." [SO:ke]	490627	\N	SOFA	sequence	1	SO	mobile_genetic_element	extrachromosomal_mobile_genetic_element
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001038	"An MGE that is not integrated into the host chromosome." [SO:ke]	1073154	SOFA	SOFA	sequence	2	SO	biological_region	extrachromosomal_mobile_genetic_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001038	"An MGE that is not integrated into the host chromosome." [SO:ke]	1904205	SOFA	SOFA	sequence	3	SO	region	extrachromosomal_mobile_genetic_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001038	"An MGE that is not integrated into the host chromosome." [SO:ke]	2928631	SOFA	SOFA	sequence	4	SO	sequence_feature	extrachromosomal_mobile_genetic_element
SO:0001039	\N	SOFA	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0001039	"An MGE that is integrated into the host chromosome." [SO:ke]	45926	\N	SOFA	sequence	0	SO	integrated_mobile_genetic_element	integrated_mobile_genetic_element
SO:0001037	SO:0001039	SOFA	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0001039	"An MGE that is integrated into the host chromosome." [SO:ke]	490628	SOFA	SOFA	sequence	1	SO	mobile_genetic_element	integrated_mobile_genetic_element
SO:0001411	SO:0001037	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001039	"An MGE that is integrated into the host chromosome." [SO:ke]	1073155	SOFA	SOFA	sequence	2	SO	biological_region	integrated_mobile_genetic_element
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001039	"An MGE that is integrated into the host chromosome." [SO:ke]	1904206	SOFA	SOFA	sequence	3	SO	region	integrated_mobile_genetic_element
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001039	"An MGE that is integrated into the host chromosome." [SO:ke]	2928632	SOFA	SOFA	sequence	4	SO	sequence_feature	integrated_mobile_genetic_element
SO:0001040	\N	\N	"A plasmid sequence that is integrated within the host chromosome." [SO:ke]	SO:0001040	"A plasmid sequence that is integrated within the host chromosome." [SO:ke]	45927	\N	\N	sequence	0	SO	integrated_plasmid	integrated_plasmid
SO:0001039	SO:0001040	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0001040	"A plasmid sequence that is integrated within the host chromosome." [SO:ke]	490629	\N	SOFA	sequence	1	SO	integrated_mobile_genetic_element	integrated_plasmid
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0001040	"A plasmid sequence that is integrated within the host chromosome." [SO:ke]	1073156	SOFA	SOFA	sequence	2	SO	mobile_genetic_element	integrated_plasmid
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001040	"A plasmid sequence that is integrated within the host chromosome." [SO:ke]	1904207	SOFA	SOFA	sequence	3	SO	biological_region	integrated_plasmid
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001040	"A plasmid sequence that is integrated within the host chromosome." [SO:ke]	2928633	SOFA	SOFA	sequence	4	SO	region	integrated_plasmid
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001040	"A plasmid sequence that is integrated within the host chromosome." [SO:ke]	4001882	SOFA	SOFA	sequence	5	SO	sequence_feature	integrated_plasmid
SO:0001041	\N	\N	"The region of nucleotide sequence of a virus, a submicroscopic particle that replicates by infecting a host cell." [SO:ke]	SO:0001041	"The region of nucleotide sequence of a virus, a submicroscopic particle that replicates by infecting a host cell." [SO:ke]	45928	\N	\N	sequence	0	SO	viral_sequence	viral_sequence
SO:0001038	SO:0001041	\N	"An MGE that is not integrated into the host chromosome." [SO:ke]	SO:0001041	"The region of nucleotide sequence of a virus, a submicroscopic particle that replicates by infecting a host cell." [SO:ke]	490630	\N	\N	sequence	1	SO	extrachromosomal_mobile_genetic_element	viral_sequence
SO:0001235	SO:0001041	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001041	"The region of nucleotide sequence of a virus, a submicroscopic particle that replicates by infecting a host cell." [SO:ke]	490631	\N	SOFA	sequence	1	SO	replicon	viral_sequence
SO:0001037	SO:0001038	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0001041	"The region of nucleotide sequence of a virus, a submicroscopic particle that replicates by infecting a host cell." [SO:ke]	1073157	\N	SOFA	sequence	2	SO	mobile_genetic_element	viral_sequence
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001041	"The region of nucleotide sequence of a virus, a submicroscopic particle that replicates by infecting a host cell." [SO:ke]	1073158	SOFA	SOFA	sequence	2	SO	biological_region	viral_sequence
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001041	"The region of nucleotide sequence of a virus, a submicroscopic particle that replicates by infecting a host cell." [SO:ke]	1904208	SOFA	SOFA	sequence	3	SO	biological_region	viral_sequence
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001041	"The region of nucleotide sequence of a virus, a submicroscopic particle that replicates by infecting a host cell." [SO:ke]	2928634	SOFA	SOFA	sequence	4	SO	region	viral_sequence
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001041	"The region of nucleotide sequence of a virus, a submicroscopic particle that replicates by infecting a host cell." [SO:ke]	3173925	SOFA	SOFA	sequence	5	SO	sequence_feature	viral_sequence
SO:0001042	\N	\N	"The nucleotide sequence of a virus that infects bacteria." [SO:ke]	SO:0001042	"The nucleotide sequence of a virus that infects bacteria." [SO:ke]	45929	\N	\N	sequence	0	SO	phage_sequence	phage_sequence
SO:0001041	SO:0001042	\N	"The region of nucleotide sequence of a virus, a submicroscopic particle that replicates by infecting a host cell." [SO:ke]	SO:0001042	"The nucleotide sequence of a virus that infects bacteria." [SO:ke]	490632	\N	\N	sequence	1	SO	viral_sequence	phage_sequence
SO:0001038	SO:0001041	\N	"An MGE that is not integrated into the host chromosome." [SO:ke]	SO:0001042	"The nucleotide sequence of a virus that infects bacteria." [SO:ke]	1073159	\N	\N	sequence	2	SO	extrachromosomal_mobile_genetic_element	phage_sequence
SO:0001235	SO:0001041	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001042	"The nucleotide sequence of a virus that infects bacteria." [SO:ke]	1073160	\N	SOFA	sequence	2	SO	replicon	phage_sequence
SO:0001037	SO:0001038	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0001042	"The nucleotide sequence of a virus that infects bacteria." [SO:ke]	1904210	\N	SOFA	sequence	3	SO	mobile_genetic_element	phage_sequence
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001042	"The nucleotide sequence of a virus that infects bacteria." [SO:ke]	1904211	SOFA	SOFA	sequence	3	SO	biological_region	phage_sequence
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001042	"The nucleotide sequence of a virus that infects bacteria." [SO:ke]	2928636	SOFA	SOFA	sequence	4	SO	biological_region	phage_sequence
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001042	"The nucleotide sequence of a virus that infects bacteria." [SO:ke]	4001883	SOFA	SOFA	sequence	5	SO	region	phage_sequence
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001042	"The nucleotide sequence of a virus that infects bacteria." [SO:ke]	4385772	SOFA	SOFA	sequence	6	SO	sequence_feature	phage_sequence
SO:0001043	\N	\N	"An attachment site located on a conjugative transposon and used for site-specific integration of a conjugative transposon." [Phigo:at]	SO:0001043	"An attachment site located on a conjugative transposon and used for site-specific integration of a conjugative transposon." [Phigo:at]	45930	\N	\N	sequence	0	SO	attCtn_site	attCtn_site
SO:0000371	SO:0001043	\N	"A transposon that encodes function required for conjugation." [http://www.sci.sdsu.edu/~smaloy/Glossary/C.html]	SO:0001043	"An attachment site located on a conjugative transposon and used for site-specific integration of a conjugative transposon." [Phigo:at]	490633	\N	\N	sequence	1	SO	conjugative_transposon	attCtn_site
SO:0000946	SO:0001043	\N	"A region specifically recognised by a recombinase, which inserts or removes another region marked by a distinct cognate integration/excision site." [SO:as]	SO:0001043	"An attachment site located on a conjugative transposon and used for site-specific integration of a conjugative transposon." [Phigo:at]	490634	\N	\N	sequence	1	SO	integration_excision_site	attCtn_site
SO:0000182	SO:0000371	\N	"A transposon where the mechanism of transposition is via a DNA intermediate." [SO:ke]	SO:0001043	"An attachment site located on a conjugative transposon and used for site-specific integration of a conjugative transposon." [Phigo:at]	1073161	\N	\N	sequence	2	SO	DNA_transposon	attCtn_site
SO:0000342	SO:0000946	\N	"" []	SO:0001043	"An attachment site located on a conjugative transposon and used for site-specific integration of a conjugative transposon." [Phigo:at]	1073162	\N	\N	sequence	2	SO	site_specific_recombination_target_region	attCtn_site
SO:0000101	SO:0000182	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0001043	"An attachment site located on a conjugative transposon and used for site-specific integration of a conjugative transposon." [Phigo:at]	1904212	\N	SOFA	sequence	3	SO	transposable_element	attCtn_site
SO:0000299	SO:0000342	\N	"" []	SO:0001043	"An attachment site located on a conjugative transposon and used for site-specific integration of a conjugative transposon." [Phigo:at]	1904213	\N	\N	sequence	3	SO	specific_recombination_site	attCtn_site
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0001043	"An attachment site located on a conjugative transposon and used for site-specific integration of a conjugative transposon." [Phigo:at]	2928638	SOFA	SOFA	sequence	4	SO	integrated_mobile_genetic_element	attCtn_site
SO:0000669	SO:0000299	\N	"" []	SO:0001043	"An attachment site located on a conjugative transposon and used for site-specific integration of a conjugative transposon." [Phigo:at]	2928639	\N	\N	sequence	4	SO	sequence_rearrangement_feature	attCtn_site
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0001043	"An attachment site located on a conjugative transposon and used for site-specific integration of a conjugative transposon." [Phigo:at]	4001885	SOFA	SOFA	sequence	5	SO	mobile_genetic_element	attCtn_site
SO:0000298	SO:0000669	\N	"" []	SO:0001043	"An attachment site located on a conjugative transposon and used for site-specific integration of a conjugative transposon." [Phigo:at]	4001886	\N	\N	sequence	5	SO	recombination_feature	attCtn_site
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001043	"An attachment site located on a conjugative transposon and used for site-specific integration of a conjugative transposon." [Phigo:at]	4966310	SOFA	SOFA	sequence	6	SO	biological_region	attCtn_site
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001043	"An attachment site located on a conjugative transposon and used for site-specific integration of a conjugative transposon." [Phigo:at]	4966311	\N	SOFA	sequence	6	SO	biological_region	attCtn_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001043	"An attachment site located on a conjugative transposon and used for site-specific integration of a conjugative transposon." [Phigo:at]	5741132	SOFA	SOFA	sequence	7	SO	region	attCtn_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001043	"An attachment site located on a conjugative transposon and used for site-specific integration of a conjugative transposon." [Phigo:at]	6311005	SOFA	SOFA	sequence	8	SO	sequence_feature	attCtn_site
SO:0001044	\N	\N	"A nuclear pseudogene of either coding or non-coding mitochondria derived sequence." [SO:xp]	SO:0001044	"A nuclear pseudogene of either coding or non-coding mitochondria derived sequence." [SO:xp]	45931	\N	\N	sequence	0	SO	nuclear_mt_pseudogene	nuclear_mt_pseudogene
SO:0001760	SO:0001044	\N	"A pseudogene that arose from a means other than retrotransposition. A pseudogene created via genomic duplication of a functional protein-coding parent gene followed by accumulation of deleterious mutations." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, SO:ke]	SO:0001044	"A nuclear pseudogene of either coding or non-coding mitochondria derived sequence." [SO:xp]	490635	\N	\N	sequence	1	SO	non_processed_pseudogene	nuclear_mt_pseudogene
SO:0000336	SO:0001760	\N	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	SO:0001044	"A nuclear pseudogene of either coding or non-coding mitochondria derived sequence." [SO:xp]	1073163	\N	SOFA	sequence	2	SO	pseudogene	nuclear_mt_pseudogene
SO:0001411	SO:0000336	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001044	"A nuclear pseudogene of either coding or non-coding mitochondria derived sequence." [SO:xp]	1904214	SOFA	SOFA	sequence	3	SO	biological_region	nuclear_mt_pseudogene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001044	"A nuclear pseudogene of either coding or non-coding mitochondria derived sequence." [SO:xp]	2928640	SOFA	SOFA	sequence	4	SO	region	nuclear_mt_pseudogene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001044	"A nuclear pseudogene of either coding or non-coding mitochondria derived sequence." [SO:xp]	4001887	SOFA	SOFA	sequence	5	SO	sequence_feature	nuclear_mt_pseudogene
SO:0001045	\N	\N	"A MGE region consisting of two fused plasmids resulting from a replicative transposition event." [phigo:at]	SO:0001045	"A MGE region consisting of two fused plasmids resulting from a replicative transposition event." [phigo:at]	45932	\N	\N	sequence	0	SO	cointegrated_plasmid	cointegrated_plasmid
SO:0001039	SO:0001045	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0001045	"A MGE region consisting of two fused plasmids resulting from a replicative transposition event." [phigo:at]	490636	\N	SOFA	sequence	1	SO	integrated_mobile_genetic_element	cointegrated_plasmid
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0001045	"A MGE region consisting of two fused plasmids resulting from a replicative transposition event." [phigo:at]	1073164	SOFA	SOFA	sequence	2	SO	mobile_genetic_element	cointegrated_plasmid
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001045	"A MGE region consisting of two fused plasmids resulting from a replicative transposition event." [phigo:at]	1904215	SOFA	SOFA	sequence	3	SO	biological_region	cointegrated_plasmid
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001045	"A MGE region consisting of two fused plasmids resulting from a replicative transposition event." [phigo:at]	2928641	SOFA	SOFA	sequence	4	SO	region	cointegrated_plasmid
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001045	"A MGE region consisting of two fused plasmids resulting from a replicative transposition event." [phigo:at]	4001888	SOFA	SOFA	sequence	5	SO	sequence_feature	cointegrated_plasmid
SO:0001046	\N	\N	"Component of the inversion site located at the left of a region susceptible to site-specific inversion." [Phigo:at]	SO:0001046	"Component of the inversion site located at the left of a region susceptible to site-specific inversion." [Phigo:at]	45933	\N	\N	sequence	0	SO	IRLinv_site	IRLinv_site
SO:0000948	SO:0001046	\N	"A region specifically recognised by a recombinase, which inverts the region flanked by a pair of sites." [SO:ma]	SO:0001046	"Component of the inversion site located at the left of a region susceptible to site-specific inversion." [Phigo:at]	490637	\N	\N	sequence	1	SO	inversion_site	IRLinv_site
SO:0001048	SO:0001046	\N	"A region located within an inversion site." [SO:ke]	SO:0001046	"Component of the inversion site located at the left of a region susceptible to site-specific inversion." [Phigo:at]	490638	\N	\N	sequence	1	SO	inversion_site_part	IRLinv_site
SO:0000342	SO:0000948	\N	"" []	SO:0001046	"Component of the inversion site located at the left of a region susceptible to site-specific inversion." [Phigo:at]	1073165	\N	\N	sequence	2	SO	site_specific_recombination_target_region	IRLinv_site
SO:0000342	SO:0001048	\N	"" []	SO:0001046	"Component of the inversion site located at the left of a region susceptible to site-specific inversion." [Phigo:at]	1073166	\N	\N	sequence	2	SO	site_specific_recombination_target_region	IRLinv_site
SO:0000299	SO:0000342	\N	"" []	SO:0001046	"Component of the inversion site located at the left of a region susceptible to site-specific inversion." [Phigo:at]	1904216	\N	\N	sequence	3	SO	specific_recombination_site	IRLinv_site
SO:0000669	SO:0000299	\N	"" []	SO:0001046	"Component of the inversion site located at the left of a region susceptible to site-specific inversion." [Phigo:at]	2928642	\N	\N	sequence	4	SO	sequence_rearrangement_feature	IRLinv_site
SO:0000298	SO:0000669	\N	"" []	SO:0001046	"Component of the inversion site located at the left of a region susceptible to site-specific inversion." [Phigo:at]	4001889	\N	\N	sequence	5	SO	recombination_feature	IRLinv_site
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001046	"Component of the inversion site located at the left of a region susceptible to site-specific inversion." [Phigo:at]	4966312	\N	SOFA	sequence	6	SO	biological_region	IRLinv_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001046	"Component of the inversion site located at the left of a region susceptible to site-specific inversion." [Phigo:at]	5741133	SOFA	SOFA	sequence	7	SO	region	IRLinv_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001046	"Component of the inversion site located at the left of a region susceptible to site-specific inversion." [Phigo:at]	6311006	SOFA	SOFA	sequence	8	SO	sequence_feature	IRLinv_site
SO:0001047	\N	\N	"Component of the inversion site located at the right of a region susceptible to site-specific inversion." [Phigo:at]	SO:0001047	"Component of the inversion site located at the right of a region susceptible to site-specific inversion." [Phigo:at]	45934	\N	\N	sequence	0	SO	IRRinv_site	IRRinv_site
SO:0000948	SO:0001047	\N	"A region specifically recognised by a recombinase, which inverts the region flanked by a pair of sites." [SO:ma]	SO:0001047	"Component of the inversion site located at the right of a region susceptible to site-specific inversion." [Phigo:at]	490639	\N	\N	sequence	1	SO	inversion_site	IRRinv_site
SO:0001048	SO:0001047	\N	"A region located within an inversion site." [SO:ke]	SO:0001047	"Component of the inversion site located at the right of a region susceptible to site-specific inversion." [Phigo:at]	490640	\N	\N	sequence	1	SO	inversion_site_part	IRRinv_site
SO:0000342	SO:0000948	\N	"" []	SO:0001047	"Component of the inversion site located at the right of a region susceptible to site-specific inversion." [Phigo:at]	1073167	\N	\N	sequence	2	SO	site_specific_recombination_target_region	IRRinv_site
SO:0000342	SO:0001048	\N	"" []	SO:0001047	"Component of the inversion site located at the right of a region susceptible to site-specific inversion." [Phigo:at]	1073168	\N	\N	sequence	2	SO	site_specific_recombination_target_region	IRRinv_site
SO:0000299	SO:0000342	\N	"" []	SO:0001047	"Component of the inversion site located at the right of a region susceptible to site-specific inversion." [Phigo:at]	1904217	\N	\N	sequence	3	SO	specific_recombination_site	IRRinv_site
SO:0000669	SO:0000299	\N	"" []	SO:0001047	"Component of the inversion site located at the right of a region susceptible to site-specific inversion." [Phigo:at]	2928643	\N	\N	sequence	4	SO	sequence_rearrangement_feature	IRRinv_site
SO:0000298	SO:0000669	\N	"" []	SO:0001047	"Component of the inversion site located at the right of a region susceptible to site-specific inversion." [Phigo:at]	4001890	\N	\N	sequence	5	SO	recombination_feature	IRRinv_site
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001047	"Component of the inversion site located at the right of a region susceptible to site-specific inversion." [Phigo:at]	4966313	\N	SOFA	sequence	6	SO	biological_region	IRRinv_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001047	"Component of the inversion site located at the right of a region susceptible to site-specific inversion." [Phigo:at]	5741134	SOFA	SOFA	sequence	7	SO	region	IRRinv_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001047	"Component of the inversion site located at the right of a region susceptible to site-specific inversion." [Phigo:at]	6311007	SOFA	SOFA	sequence	8	SO	sequence_feature	IRRinv_site
SO:0001048	\N	\N	"A region located within an inversion site." [SO:ke]	SO:0001048	"A region located within an inversion site." [SO:ke]	45935	\N	\N	sequence	0	SO	inversion_site_part	inversion_site_part
SO:0000342	SO:0001048	\N	"" []	SO:0001048	"A region located within an inversion site." [SO:ke]	490641	\N	\N	sequence	1	SO	site_specific_recombination_target_region	inversion_site_part
SO:0000299	SO:0000342	\N	"" []	SO:0001048	"A region located within an inversion site." [SO:ke]	1073169	\N	\N	sequence	2	SO	specific_recombination_site	inversion_site_part
SO:0000669	SO:0000299	\N	"" []	SO:0001048	"A region located within an inversion site." [SO:ke]	1904218	\N	\N	sequence	3	SO	sequence_rearrangement_feature	inversion_site_part
SO:0000298	SO:0000669	\N	"" []	SO:0001048	"A region located within an inversion site." [SO:ke]	2928644	\N	\N	sequence	4	SO	recombination_feature	inversion_site_part
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001048	"A region located within an inversion site." [SO:ke]	4001891	\N	SOFA	sequence	5	SO	biological_region	inversion_site_part
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001048	"A region located within an inversion site." [SO:ke]	4966314	SOFA	SOFA	sequence	6	SO	region	inversion_site_part
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001048	"A region located within an inversion site." [SO:ke]	5741135	SOFA	SOFA	sequence	7	SO	sequence_feature	inversion_site_part
SO:0001049	\N	\N	"An island that contains genes for integration/excision and the gene and site for the initiation of intercellular transfer by conjugation. It can be complemented for transfer by a conjugative transposon." [Phigo:ariane]	SO:0001049	"An island that contains genes for integration/excision and the gene and site for the initiation of intercellular transfer by conjugation. It can be complemented for transfer by a conjugative transposon." [Phigo:ariane]	45936	\N	\N	sequence	0	SO	defective_conjugative_transposon	defective_conjugative_transposon
SO:0000772	SO:0001049	\N	"A genomic island is an integrated mobile genetic element, characterized by size (over 10 Kb). It that has features that suggest a foreign origin. These can include nucleotide distribution (oligonucleotides signature, CG content etc.) that differs from the bulk of the chromosome and/or genes suggesting DNA mobility." [Phigo:at, SO:ke]	SO:0001049	"An island that contains genes for integration/excision and the gene and site for the initiation of intercellular transfer by conjugation. It can be complemented for transfer by a conjugative transposon." [Phigo:ariane]	490642	\N	\N	sequence	1	SO	genomic_island	defective_conjugative_transposon
SO:0001039	SO:0000772	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0001049	"An island that contains genes for integration/excision and the gene and site for the initiation of intercellular transfer by conjugation. It can be complemented for transfer by a conjugative transposon." [Phigo:ariane]	1073170	\N	SOFA	sequence	2	SO	integrated_mobile_genetic_element	defective_conjugative_transposon
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0001049	"An island that contains genes for integration/excision and the gene and site for the initiation of intercellular transfer by conjugation. It can be complemented for transfer by a conjugative transposon." [Phigo:ariane]	1904219	SOFA	SOFA	sequence	3	SO	mobile_genetic_element	defective_conjugative_transposon
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001049	"An island that contains genes for integration/excision and the gene and site for the initiation of intercellular transfer by conjugation. It can be complemented for transfer by a conjugative transposon." [Phigo:ariane]	2928645	SOFA	SOFA	sequence	4	SO	biological_region	defective_conjugative_transposon
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001049	"An island that contains genes for integration/excision and the gene and site for the initiation of intercellular transfer by conjugation. It can be complemented for transfer by a conjugative transposon." [Phigo:ariane]	4001892	SOFA	SOFA	sequence	5	SO	region	defective_conjugative_transposon
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001049	"An island that contains genes for integration/excision and the gene and site for the initiation of intercellular transfer by conjugation. It can be complemented for transfer by a conjugative transposon." [Phigo:ariane]	4966315	SOFA	SOFA	sequence	6	SO	sequence_feature	defective_conjugative_transposon
SO:0001050	\N	\N	"A portion of a repeat, interrupted by the insertion of another element." [SO:ke]	SO:0001050	"A portion of a repeat, interrupted by the insertion of another element." [SO:ke]	45937	\N	\N	sequence	0	SO	repeat_fragment	repeat_fragment
SO:0000840	SO:0001050	\N	"A region of a repeated sequence." [SO:ke]	SO:0001050	"A portion of a repeat, interrupted by the insertion of another element." [SO:ke]	490643	\N	\N	sequence	1	SO	repeat_component	repeat_fragment
SO:0001649	SO:0001050	\N	"A repeat that is disrupted by the insertion of another element." [SO:ke]	SO:0001050	"A portion of a repeat, interrupted by the insertion of another element." [SO:ke]	490644	\N	\N	sequence	1	SO	nested_repeat	repeat_fragment
SO:0001412	SO:0000840	\N	"A region that is defined according to its relations with other regions within the same sequence." [SO:cb]	SO:0001050	"A portion of a repeat, interrupted by the insertion of another element." [SO:ke]	1073171	\N	SOFA	sequence	2	SO	topologically_defined_region	repeat_fragment
SO:0000657	SO:0001649	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0001050	"A portion of a repeat, interrupted by the insertion of another element." [SO:ke]	1073172	\N	SOFA	sequence	2	SO	repeat_region	repeat_fragment
SO:0000001	SO:0001412	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001050	"A portion of a repeat, interrupted by the insertion of another element." [SO:ke]	1904220	SOFA	SOFA	sequence	3	SO	region	repeat_fragment
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001050	"A portion of a repeat, interrupted by the insertion of another element." [SO:ke]	1904221	SOFA	SOFA	sequence	3	SO	biological_region	repeat_fragment
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001050	"A portion of a repeat, interrupted by the insertion of another element." [SO:ke]	4001893	SOFA	SOFA	sequence	5	SO	sequence_feature	repeat_fragment
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001050	"A portion of a repeat, interrupted by the insertion of another element." [SO:ke]	2928647	SOFA	SOFA	sequence	4	SO	region	repeat_fragment
SO:0001054	\N	\N	"A portion of a transposon, interrupted by the insertion of another element." [SO:ke]	SO:0001054	"A portion of a transposon, interrupted by the insertion of another element." [SO:ke]	45938	\N	\N	sequence	0	SO	transposon_fragment	transposon_fragment
SO:0000840	SO:0001054	\N	"A region of a repeated sequence." [SO:ke]	SO:0001054	"A portion of a transposon, interrupted by the insertion of another element." [SO:ke]	490645	\N	\N	sequence	1	SO	repeat_component	transposon_fragment
SO:0001648	SO:0001054	\N	"A transposon that is disrupted by the insertion of another element." [SO:ke]	SO:0001054	"A portion of a transposon, interrupted by the insertion of another element." [SO:ke]	490646	\N	\N	sequence	1	SO	nested_transposon	transposon_fragment
SO:0001412	SO:0000840	\N	"A region that is defined according to its relations with other regions within the same sequence." [SO:cb]	SO:0001054	"A portion of a transposon, interrupted by the insertion of another element." [SO:ke]	1073173	\N	SOFA	sequence	2	SO	topologically_defined_region	transposon_fragment
SO:0000101	SO:0001648	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0001054	"A portion of a transposon, interrupted by the insertion of another element." [SO:ke]	1073174	\N	SOFA	sequence	2	SO	transposable_element	transposon_fragment
SO:0000001	SO:0001412	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001054	"A portion of a transposon, interrupted by the insertion of another element." [SO:ke]	1904222	SOFA	SOFA	sequence	3	SO	region	transposon_fragment
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0001054	"A portion of a transposon, interrupted by the insertion of another element." [SO:ke]	1904223	SOFA	SOFA	sequence	3	SO	integrated_mobile_genetic_element	transposon_fragment
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001054	"A portion of a transposon, interrupted by the insertion of another element." [SO:ke]	5741136	SOFA	SOFA	sequence	7	SO	sequence_feature	transposon_fragment
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0001054	"A portion of a transposon, interrupted by the insertion of another element." [SO:ke]	2928649	SOFA	SOFA	sequence	4	SO	mobile_genetic_element	transposon_fragment
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001054	"A portion of a transposon, interrupted by the insertion of another element." [SO:ke]	4001894	SOFA	SOFA	sequence	5	SO	biological_region	transposon_fragment
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001054	"A portion of a transposon, interrupted by the insertion of another element." [SO:ke]	4966316	SOFA	SOFA	sequence	6	SO	region	transposon_fragment
SO:0001055	\N	SOFA	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001055	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	45939	\N	SOFA	sequence	0	SO	transcriptional_cis_regulatory_region	transcriptional_cis_regulatory_region
SO:0001679	SO:0001055	SOFA	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001055	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	490647	SOFA	SOFA	sequence	1	SO	transcription_regulatory_region	transcriptional_cis_regulatory_region
SO:0005836	SO:0001679	SOFA	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001055	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	1073175	SOFA	SOFA	sequence	2	SO	regulatory_region	transcriptional_cis_regulatory_region
SO:0000831	SO:0005836	SOFA	"A region of a gene." [SO:ke]	SO:0001055	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	1904224	SOFA	SOFA	sequence	3	SO	gene_member_region	transcriptional_cis_regulatory_region
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001055	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	2928650	SOFA	SOFA	sequence	4	SO	biological_region	transcriptional_cis_regulatory_region
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001055	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	4001895	SOFA	SOFA	sequence	5	SO	region	transcriptional_cis_regulatory_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001055	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	4966317	SOFA	SOFA	sequence	6	SO	sequence_feature	transcriptional_cis_regulatory_region
SO:0001056	\N	SOFA	"A regulatory_region that modulates splicing." [SO:ke]	SO:0001056	"A regulatory_region that modulates splicing." [SO:ke]	45940	\N	SOFA	sequence	0	SO	splicing_regulatory_region	splicing_regulatory_region
SO:0001679	SO:0001056	SOFA	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001056	"A regulatory_region that modulates splicing." [SO:ke]	490648	SOFA	SOFA	sequence	1	SO	transcription_regulatory_region	splicing_regulatory_region
SO:0005836	SO:0001679	SOFA	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001056	"A regulatory_region that modulates splicing." [SO:ke]	1073176	SOFA	SOFA	sequence	2	SO	regulatory_region	splicing_regulatory_region
SO:0000831	SO:0005836	SOFA	"A region of a gene." [SO:ke]	SO:0001056	"A regulatory_region that modulates splicing." [SO:ke]	1904225	SOFA	SOFA	sequence	3	SO	gene_member_region	splicing_regulatory_region
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001056	"A regulatory_region that modulates splicing." [SO:ke]	2928651	SOFA	SOFA	sequence	4	SO	biological_region	splicing_regulatory_region
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001056	"A regulatory_region that modulates splicing." [SO:ke]	4001896	SOFA	SOFA	sequence	5	SO	region	splicing_regulatory_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001056	"A regulatory_region that modulates splicing." [SO:ke]	4966318	SOFA	SOFA	sequence	6	SO	sequence_feature	splicing_regulatory_region
SO:0001058	\N	\N	"A transcriptional_cis_regulatory_region that restricts the activity of a CRM to a single promoter and which functions only when both itself and an insulator are located between the CRM and the promoter." [SO:regcreative]	SO:0001058	"A transcriptional_cis_regulatory_region that restricts the activity of a CRM to a single promoter and which functions only when both itself and an insulator are located between the CRM and the promoter." [SO:regcreative]	45941	\N	\N	sequence	0	SO	promoter_targeting_sequence	promoter_targeting_sequence
SO:0001055	SO:0001058	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001058	"A transcriptional_cis_regulatory_region that restricts the activity of a CRM to a single promoter and which functions only when both itself and an insulator are located between the CRM and the promoter." [SO:regcreative]	490649	\N	SOFA	sequence	1	SO	transcriptional_cis_regulatory_region	promoter_targeting_sequence
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001058	"A transcriptional_cis_regulatory_region that restricts the activity of a CRM to a single promoter and which functions only when both itself and an insulator are located between the CRM and the promoter." [SO:regcreative]	1073177	SOFA	SOFA	sequence	2	SO	transcription_regulatory_region	promoter_targeting_sequence
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001058	"A transcriptional_cis_regulatory_region that restricts the activity of a CRM to a single promoter and which functions only when both itself and an insulator are located between the CRM and the promoter." [SO:regcreative]	1904226	SOFA	SOFA	sequence	3	SO	regulatory_region	promoter_targeting_sequence
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001058	"A transcriptional_cis_regulatory_region that restricts the activity of a CRM to a single promoter and which functions only when both itself and an insulator are located between the CRM and the promoter." [SO:regcreative]	2928652	SOFA	SOFA	sequence	4	SO	gene_member_region	promoter_targeting_sequence
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001058	"A transcriptional_cis_regulatory_region that restricts the activity of a CRM to a single promoter and which functions only when both itself and an insulator are located between the CRM and the promoter." [SO:regcreative]	4001897	SOFA	SOFA	sequence	5	SO	biological_region	promoter_targeting_sequence
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001058	"A transcriptional_cis_regulatory_region that restricts the activity of a CRM to a single promoter and which functions only when both itself and an insulator are located between the CRM and the promoter." [SO:regcreative]	4966319	SOFA	SOFA	sequence	6	SO	region	promoter_targeting_sequence
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001058	"A transcriptional_cis_regulatory_region that restricts the activity of a CRM to a single promoter and which functions only when both itself and an insulator are located between the CRM and the promoter." [SO:regcreative]	5741137	SOFA	SOFA	sequence	7	SO	sequence_feature	promoter_targeting_sequence
SO:0001059	\N	SOFA	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0001059	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	45942	\N	SOFA	sequence	0	SO	sequence_alteration	sequence_alteration
SO:0002072	SO:0001059	SOFA	"" []	SO:0001059	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	490650	SOFA	\N	sequence	1	SO	sequence_comparison	sequence_alteration
SO:0000110	SO:0002072	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001059	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	1073178	\N	SOFA	sequence	2	SO	sequence_feature	sequence_alteration
SO:0001060	\N	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001060	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	45943	\N	\N	sequence	0	SO	sequence_variant	sequence_variant
SO:0001061	\N	biosapiens	"The propeptide_cleavage_site is the arginine/lysine boundary on a propeptide where cleavage occurs." [EBIBS:GAR]	SO:0001061	"The propeptide_cleavage_site is the arginine/lysine boundary on a propeptide where cleavage occurs." [EBIBS:GAR]	45944	\N	biosapiens	sequence	0	SO	propeptide_cleavage_site	propeptide_cleavage_site
SO:0001062	SO:0001061	biosapiens	"Part of a peptide chain which is cleaved off during the formation of the mature protein." [EBIBS:GAR]	SO:0001061	"The propeptide_cleavage_site is the arginine/lysine boundary on a propeptide where cleavage occurs." [EBIBS:GAR]	490651	biosapiens	biosapiens	sequence	1	SO	propeptide	propeptide_cleavage_site
SO:0100011	SO:0001061	biosapiens	"The cleaved_peptide_region is the region of a peptide sequence that is cleaved during maturation." [EBIBS:GAR]	SO:0001061	"The propeptide_cleavage_site is the arginine/lysine boundary on a propeptide where cleavage occurs." [EBIBS:GAR]	490652	biosapiens	biosapiens,SOFA	sequence	1	SO	cleaved_peptide_region	propeptide_cleavage_site
SO:0100011	SO:0001062	biosapiens	"The cleaved_peptide_region is the region of a peptide sequence that is cleaved during maturation." [EBIBS:GAR]	SO:0001061	"The propeptide_cleavage_site is the arginine/lysine boundary on a propeptide where cleavage occurs." [EBIBS:GAR]	1073179	biosapiens	biosapiens,SOFA	sequence	2	SO	cleaved_peptide_region	propeptide_cleavage_site
SO:0000839	SO:0100011	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001061	"The propeptide_cleavage_site is the arginine/lysine boundary on a propeptide where cleavage occurs." [EBIBS:GAR]	1904227	biosapiens,SOFA	biosapiens,SOFA	sequence	3	SO	polypeptide_region	propeptide_cleavage_site
SO:0001063	SO:0100011	biosapiens	"An immature_peptide_region is the extent of the peptide after it has been translated and before any processing occurs." [EBIBS:GAR]	SO:0001061	"The propeptide_cleavage_site is the arginine/lysine boundary on a propeptide where cleavage occurs." [EBIBS:GAR]	1904228	biosapiens,SOFA	biosapiens,SOFA	sequence	3	SO	immature_peptide_region	propeptide_cleavage_site
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001061	"The propeptide_cleavage_site is the arginine/lysine boundary on a propeptide where cleavage occurs." [EBIBS:GAR]	3173928	biosapiens,SOFA	SOFA	sequence	5	SO	polypeptide	propeptide_cleavage_site
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001061	"The propeptide_cleavage_site is the arginine/lysine boundary on a propeptide where cleavage occurs." [EBIBS:GAR]	3173929	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	propeptide_cleavage_site
SO:0000839	SO:0001063	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001061	"The propeptide_cleavage_site is the arginine/lysine boundary on a propeptide where cleavage occurs." [EBIBS:GAR]	2018234	biosapiens,SOFA	biosapiens,SOFA	sequence	4	SO	polypeptide_region	propeptide_cleavage_site
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001061	"The propeptide_cleavage_site is the arginine/lysine boundary on a propeptide where cleavage occurs." [EBIBS:GAR]	4132325	SOFA	SOFA	sequence	6	SO	biological_region	propeptide_cleavage_site
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001061	"The propeptide_cleavage_site is the arginine/lysine boundary on a propeptide where cleavage occurs." [EBIBS:GAR]	5180717	SOFA	SOFA	sequence	7	SO	region	propeptide_cleavage_site
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001061	"The propeptide_cleavage_site is the arginine/lysine boundary on a propeptide where cleavage occurs." [EBIBS:GAR]	5876441	SOFA	SOFA	sequence	8	SO	sequence_feature	propeptide_cleavage_site
SO:0001062	\N	biosapiens	"Part of a peptide chain which is cleaved off during the formation of the mature protein." [EBIBS:GAR]	SO:0001062	"Part of a peptide chain which is cleaved off during the formation of the mature protein." [EBIBS:GAR]	45945	\N	biosapiens	sequence	0	SO	propeptide	propeptide
SO:0100011	SO:0001062	biosapiens	"The cleaved_peptide_region is the region of a peptide sequence that is cleaved during maturation." [EBIBS:GAR]	SO:0001062	"Part of a peptide chain which is cleaved off during the formation of the mature protein." [EBIBS:GAR]	490653	biosapiens	biosapiens,SOFA	sequence	1	SO	cleaved_peptide_region	propeptide
SO:0000839	SO:0100011	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001062	"Part of a peptide chain which is cleaved off during the formation of the mature protein." [EBIBS:GAR]	1073182	biosapiens,SOFA	biosapiens,SOFA	sequence	2	SO	polypeptide_region	propeptide
SO:0001063	SO:0100011	biosapiens	"An immature_peptide_region is the extent of the peptide after it has been translated and before any processing occurs." [EBIBS:GAR]	SO:0001062	"Part of a peptide chain which is cleaved off during the formation of the mature protein." [EBIBS:GAR]	1073183	biosapiens,SOFA	biosapiens,SOFA	sequence	2	SO	immature_peptide_region	propeptide
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001062	"Part of a peptide chain which is cleaved off during the formation of the mature protein." [EBIBS:GAR]	2928657	biosapiens,SOFA	SOFA	sequence	4	SO	polypeptide	propeptide
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001062	"Part of a peptide chain which is cleaved off during the formation of the mature protein." [EBIBS:GAR]	2928658	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	propeptide
SO:0000839	SO:0001063	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001062	"Part of a peptide chain which is cleaved off during the formation of the mature protein." [EBIBS:GAR]	1904234	biosapiens,SOFA	biosapiens,SOFA	sequence	3	SO	polypeptide_region	propeptide
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001062	"Part of a peptide chain which is cleaved off during the formation of the mature protein." [EBIBS:GAR]	3173930	SOFA	SOFA	sequence	5	SO	biological_region	propeptide
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001062	"Part of a peptide chain which is cleaved off during the formation of the mature protein." [EBIBS:GAR]	4385774	SOFA	SOFA	sequence	6	SO	region	propeptide
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001062	"Part of a peptide chain which is cleaved off during the formation of the mature protein." [EBIBS:GAR]	5180719	SOFA	SOFA	sequence	7	SO	sequence_feature	propeptide
SO:0001063	\N	biosapiens,SOFA	"An immature_peptide_region is the extent of the peptide after it has been translated and before any processing occurs." [EBIBS:GAR]	SO:0001063	"An immature_peptide_region is the extent of the peptide after it has been translated and before any processing occurs." [EBIBS:GAR]	45946	\N	biosapiens,SOFA	sequence	0	SO	immature_peptide_region	immature_peptide_region
SO:0000839	SO:0001063	biosapiens,SOFA	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001063	"An immature_peptide_region is the extent of the peptide after it has been translated and before any processing occurs." [EBIBS:GAR]	490654	biosapiens,SOFA	biosapiens,SOFA	sequence	1	SO	polypeptide_region	immature_peptide_region
SO:0000104	SO:0000839	biosapiens,SOFA	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001063	"An immature_peptide_region is the extent of the peptide after it has been translated and before any processing occurs." [EBIBS:GAR]	1073184	biosapiens,SOFA	SOFA	sequence	2	SO	polypeptide	immature_peptide_region
SO:0001411	SO:0000839	biosapiens,SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001063	"An immature_peptide_region is the extent of the peptide after it has been translated and before any processing occurs." [EBIBS:GAR]	1073185	biosapiens,SOFA	SOFA	sequence	2	SO	biological_region	immature_peptide_region
SO:0001411	SO:0000104	biosapiens,SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001063	"An immature_peptide_region is the extent of the peptide after it has been translated and before any processing occurs." [EBIBS:GAR]	1904235	SOFA	SOFA	sequence	3	SO	biological_region	immature_peptide_region
SO:0000001	SO:0001411	biosapiens,SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001063	"An immature_peptide_region is the extent of the peptide after it has been translated and before any processing occurs." [EBIBS:GAR]	2928659	SOFA	SOFA	sequence	4	SO	region	immature_peptide_region
SO:0000110	SO:0000001	biosapiens,SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001063	"An immature_peptide_region is the extent of the peptide after it has been translated and before any processing occurs." [EBIBS:GAR]	3173932	SOFA	SOFA	sequence	5	SO	sequence_feature	immature_peptide_region
SO:0001064	\N	biosapiens	"Active peptides are proteins which are biologically active, released from a precursor molecule." [EBIBS:GAR, UniProt:curation_manual]	SO:0001064	"Active peptides are proteins which are biologically active, released from a precursor molecule." [EBIBS:GAR, UniProt:curation_manual]	45947	\N	biosapiens	sequence	0	SO	active_peptide	active_peptide
SO:0000419	SO:0001064	biosapiens	"The polypeptide sequence that remains when the cleaved peptide regions have been cleaved from the immature peptide." [EBIBS:GAR, http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, SO:cb]	SO:0001064	"Active peptides are proteins which are biologically active, released from a precursor molecule." [EBIBS:GAR, UniProt:curation_manual]	490655	biosapiens	biosapiens,SOFA	sequence	1	SO	mature_protein_region	active_peptide
SO:0000839	SO:0000419	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001064	"Active peptides are proteins which are biologically active, released from a precursor molecule." [EBIBS:GAR, UniProt:curation_manual]	1073186	biosapiens,SOFA	biosapiens,SOFA	sequence	2	SO	polypeptide_region	active_peptide
SO:0001063	SO:0000419	biosapiens	"An immature_peptide_region is the extent of the peptide after it has been translated and before any processing occurs." [EBIBS:GAR]	SO:0001064	"Active peptides are proteins which are biologically active, released from a precursor molecule." [EBIBS:GAR, UniProt:curation_manual]	1073187	biosapiens,SOFA	biosapiens,SOFA	sequence	2	SO	immature_peptide_region	active_peptide
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001064	"Active peptides are proteins which are biologically active, released from a precursor molecule." [EBIBS:GAR, UniProt:curation_manual]	2928663	biosapiens,SOFA	SOFA	sequence	4	SO	polypeptide	active_peptide
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001064	"Active peptides are proteins which are biologically active, released from a precursor molecule." [EBIBS:GAR, UniProt:curation_manual]	2928664	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	active_peptide
SO:0000839	SO:0001063	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001064	"Active peptides are proteins which are biologically active, released from a precursor molecule." [EBIBS:GAR, UniProt:curation_manual]	1904239	biosapiens,SOFA	biosapiens,SOFA	sequence	3	SO	polypeptide_region	active_peptide
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001064	"Active peptides are proteins which are biologically active, released from a precursor molecule." [EBIBS:GAR, UniProt:curation_manual]	3173933	SOFA	SOFA	sequence	5	SO	biological_region	active_peptide
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001064	"Active peptides are proteins which are biologically active, released from a precursor molecule." [EBIBS:GAR, UniProt:curation_manual]	4385776	SOFA	SOFA	sequence	6	SO	region	active_peptide
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001064	"Active peptides are proteins which are biologically active, released from a precursor molecule." [EBIBS:GAR, UniProt:curation_manual]	5180720	SOFA	SOFA	sequence	7	SO	sequence_feature	active_peptide
SO:0001066	\N	biosapiens	"Polypeptide region that is rich in a particular amino acid or homopolymeric and greater than three residues in length." [EBIBS:GAR, UniProt:curation_manual]	SO:0001066	"Polypeptide region that is rich in a particular amino acid or homopolymeric and greater than three residues in length." [EBIBS:GAR, UniProt:curation_manual]	45948	\N	biosapiens	sequence	0	SO	compositionally_biased_region_of_peptide	compositionally_biased_region_of_peptide
SO:0000839	SO:0001066	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001066	"Polypeptide region that is rich in a particular amino acid or homopolymeric and greater than three residues in length." [EBIBS:GAR, UniProt:curation_manual]	490656	biosapiens	biosapiens,SOFA	sequence	1	SO	polypeptide_region	compositionally_biased_region_of_peptide
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001066	"Polypeptide region that is rich in a particular amino acid or homopolymeric and greater than three residues in length." [EBIBS:GAR, UniProt:curation_manual]	1073188	biosapiens,SOFA	SOFA	sequence	2	SO	polypeptide	compositionally_biased_region_of_peptide
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001066	"Polypeptide region that is rich in a particular amino acid or homopolymeric and greater than three residues in length." [EBIBS:GAR, UniProt:curation_manual]	1073189	biosapiens,SOFA	SOFA	sequence	2	SO	biological_region	compositionally_biased_region_of_peptide
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001066	"Polypeptide region that is rich in a particular amino acid or homopolymeric and greater than three residues in length." [EBIBS:GAR, UniProt:curation_manual]	1904240	SOFA	SOFA	sequence	3	SO	biological_region	compositionally_biased_region_of_peptide
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001066	"Polypeptide region that is rich in a particular amino acid or homopolymeric and greater than three residues in length." [EBIBS:GAR, UniProt:curation_manual]	2928665	SOFA	SOFA	sequence	4	SO	region	compositionally_biased_region_of_peptide
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001066	"Polypeptide region that is rich in a particular amino acid or homopolymeric and greater than three residues in length." [EBIBS:GAR, UniProt:curation_manual]	3173935	SOFA	SOFA	sequence	5	SO	sequence_feature	compositionally_biased_region_of_peptide
SO:0001067	\N	biosapiens	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001067	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	45949	\N	biosapiens	sequence	0	SO	polypeptide_motif	polypeptide_motif
SO:0100021	SO:0001067	biosapiens	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001067	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	490657	biosapiens	biosapiens	sequence	1	SO	polypeptide_conserved_region	polypeptide_motif
SO:0000839	SO:0100021	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001067	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	1073190	biosapiens	biosapiens,SOFA	sequence	2	SO	polypeptide_region	polypeptide_motif
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001067	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	1904242	biosapiens,SOFA	SOFA	sequence	3	SO	polypeptide	polypeptide_motif
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001067	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	1904243	biosapiens,SOFA	SOFA	sequence	3	SO	biological_region	polypeptide_motif
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001067	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	2928667	SOFA	SOFA	sequence	4	SO	biological_region	polypeptide_motif
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001067	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	4001901	SOFA	SOFA	sequence	5	SO	region	polypeptide_motif
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001067	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	4385778	SOFA	SOFA	sequence	6	SO	sequence_feature	polypeptide_motif
SO:0001068	\N	biosapiens	"A polypeptide_repeat is a single copy of an internal sequence repetition." [EBIBS:GAR]	SO:0001068	"A polypeptide_repeat is a single copy of an internal sequence repetition." [EBIBS:GAR]	45950	\N	biosapiens	sequence	0	SO	polypeptide_repeat	polypeptide_repeat
SO:0100021	SO:0001068	biosapiens	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001068	"A polypeptide_repeat is a single copy of an internal sequence repetition." [EBIBS:GAR]	490658	biosapiens	biosapiens	sequence	1	SO	polypeptide_conserved_region	polypeptide_repeat
SO:0000839	SO:0100021	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001068	"A polypeptide_repeat is a single copy of an internal sequence repetition." [EBIBS:GAR]	1073191	biosapiens	biosapiens,SOFA	sequence	2	SO	polypeptide_region	polypeptide_repeat
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001068	"A polypeptide_repeat is a single copy of an internal sequence repetition." [EBIBS:GAR]	1904244	biosapiens,SOFA	SOFA	sequence	3	SO	polypeptide	polypeptide_repeat
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001068	"A polypeptide_repeat is a single copy of an internal sequence repetition." [EBIBS:GAR]	1904245	biosapiens,SOFA	SOFA	sequence	3	SO	biological_region	polypeptide_repeat
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001068	"A polypeptide_repeat is a single copy of an internal sequence repetition." [EBIBS:GAR]	2928669	SOFA	SOFA	sequence	4	SO	biological_region	polypeptide_repeat
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001068	"A polypeptide_repeat is a single copy of an internal sequence repetition." [EBIBS:GAR]	4001903	SOFA	SOFA	sequence	5	SO	region	polypeptide_repeat
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001068	"A polypeptide_repeat is a single copy of an internal sequence repetition." [EBIBS:GAR]	4385779	SOFA	SOFA	sequence	6	SO	sequence_feature	polypeptide_repeat
SO:0001070	\N	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001070	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	45951	\N	biosapiens	sequence	0	SO	polypeptide_structural_region	polypeptide_structural_region
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001070	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	490659	biosapiens	biosapiens,SOFA	sequence	1	SO	polypeptide_region	polypeptide_structural_region
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001070	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	1073192	biosapiens,SOFA	SOFA	sequence	2	SO	polypeptide	polypeptide_structural_region
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001070	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	1073193	biosapiens,SOFA	SOFA	sequence	2	SO	biological_region	polypeptide_structural_region
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001070	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	1904246	SOFA	SOFA	sequence	3	SO	biological_region	polypeptide_structural_region
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001070	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	2928671	SOFA	SOFA	sequence	4	SO	region	polypeptide_structural_region
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001070	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	3173936	SOFA	SOFA	sequence	5	SO	sequence_feature	polypeptide_structural_region
SO:0001071	\N	biosapiens	"Arrangement of the polypeptide with respect to the lipid bilayer." [EBIBS:GAR]	SO:0001071	"Arrangement of the polypeptide with respect to the lipid bilayer." [EBIBS:GAR]	45952	\N	biosapiens	sequence	0	SO	membrane_structure	membrane_structure
SO:0001070	SO:0001071	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001071	"Arrangement of the polypeptide with respect to the lipid bilayer." [EBIBS:GAR]	490660	biosapiens	biosapiens	sequence	1	SO	polypeptide_structural_region	membrane_structure
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001071	"Arrangement of the polypeptide with respect to the lipid bilayer." [EBIBS:GAR]	1073194	biosapiens	biosapiens,SOFA	sequence	2	SO	polypeptide_region	membrane_structure
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001071	"Arrangement of the polypeptide with respect to the lipid bilayer." [EBIBS:GAR]	1904248	biosapiens,SOFA	SOFA	sequence	3	SO	polypeptide	membrane_structure
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001071	"Arrangement of the polypeptide with respect to the lipid bilayer." [EBIBS:GAR]	1904249	biosapiens,SOFA	SOFA	sequence	3	SO	biological_region	membrane_structure
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001071	"Arrangement of the polypeptide with respect to the lipid bilayer." [EBIBS:GAR]	2928673	SOFA	SOFA	sequence	4	SO	biological_region	membrane_structure
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001071	"Arrangement of the polypeptide with respect to the lipid bilayer." [EBIBS:GAR]	4001905	SOFA	SOFA	sequence	5	SO	region	membrane_structure
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001071	"Arrangement of the polypeptide with respect to the lipid bilayer." [EBIBS:GAR]	4385780	SOFA	SOFA	sequence	6	SO	sequence_feature	membrane_structure
SO:0001072	\N	biosapiens	"Polypeptide region that is localized outside of a lipid bilayer." [EBIBS:GAR, SO:cb]	SO:0001072	"Polypeptide region that is localized outside of a lipid bilayer." [EBIBS:GAR, SO:cb]	45953	\N	biosapiens	sequence	0	SO	extramembrane_polypeptide_region	extramembrane_polypeptide_region
SO:0001070	SO:0001072	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001072	"Polypeptide region that is localized outside of a lipid bilayer." [EBIBS:GAR, SO:cb]	490661	biosapiens	biosapiens	sequence	1	SO	polypeptide_structural_region	extramembrane_polypeptide_region
SO:0001071	SO:0001072	biosapiens	"Arrangement of the polypeptide with respect to the lipid bilayer." [EBIBS:GAR]	SO:0001072	"Polypeptide region that is localized outside of a lipid bilayer." [EBIBS:GAR, SO:cb]	490662	biosapiens	biosapiens	sequence	1	SO	membrane_structure	extramembrane_polypeptide_region
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001072	"Polypeptide region that is localized outside of a lipid bilayer." [EBIBS:GAR, SO:cb]	1904252	biosapiens	biosapiens,SOFA	sequence	3	SO	polypeptide_region	extramembrane_polypeptide_region
SO:0001070	SO:0001071	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001072	"Polypeptide region that is localized outside of a lipid bilayer." [EBIBS:GAR, SO:cb]	1073196	biosapiens	biosapiens	sequence	2	SO	polypeptide_structural_region	extramembrane_polypeptide_region
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001072	"Polypeptide region that is localized outside of a lipid bilayer." [EBIBS:GAR, SO:cb]	2018235	biosapiens,SOFA	SOFA	sequence	4	SO	polypeptide	extramembrane_polypeptide_region
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001072	"Polypeptide region that is localized outside of a lipid bilayer." [EBIBS:GAR, SO:cb]	2018236	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	extramembrane_polypeptide_region
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001072	"Polypeptide region that is localized outside of a lipid bilayer." [EBIBS:GAR, SO:cb]	3173937	SOFA	SOFA	sequence	5	SO	biological_region	extramembrane_polypeptide_region
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001072	"Polypeptide region that is localized outside of a lipid bilayer." [EBIBS:GAR, SO:cb]	4385781	SOFA	SOFA	sequence	6	SO	region	extramembrane_polypeptide_region
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001072	"Polypeptide region that is localized outside of a lipid bilayer." [EBIBS:GAR, SO:cb]	5180721	SOFA	SOFA	sequence	7	SO	sequence_feature	extramembrane_polypeptide_region
SO:0001073	\N	biosapiens	"Polypeptide region that is localized inside the cytoplasm." [EBIBS:GAR, SO:cb]	SO:0001073	"Polypeptide region that is localized inside the cytoplasm." [EBIBS:GAR, SO:cb]	45954	\N	biosapiens	sequence	0	SO	cytoplasmic_polypeptide_region	cytoplasmic_polypeptide_region
SO:0001072	SO:0001073	biosapiens	"Polypeptide region that is localized outside of a lipid bilayer." [EBIBS:GAR, SO:cb]	SO:0001073	"Polypeptide region that is localized inside the cytoplasm." [EBIBS:GAR, SO:cb]	490663	biosapiens	biosapiens	sequence	1	SO	extramembrane_polypeptide_region	cytoplasmic_polypeptide_region
SO:0001070	SO:0001072	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001073	"Polypeptide region that is localized inside the cytoplasm." [EBIBS:GAR, SO:cb]	1073197	biosapiens	biosapiens	sequence	2	SO	polypeptide_structural_region	cytoplasmic_polypeptide_region
SO:0001071	SO:0001072	biosapiens	"Arrangement of the polypeptide with respect to the lipid bilayer." [EBIBS:GAR]	SO:0001073	"Polypeptide region that is localized inside the cytoplasm." [EBIBS:GAR, SO:cb]	1073198	biosapiens	biosapiens	sequence	2	SO	membrane_structure	cytoplasmic_polypeptide_region
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001073	"Polypeptide region that is localized inside the cytoplasm." [EBIBS:GAR, SO:cb]	2928679	biosapiens	biosapiens,SOFA	sequence	4	SO	polypeptide_region	cytoplasmic_polypeptide_region
SO:0001070	SO:0001071	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001073	"Polypeptide region that is localized inside the cytoplasm." [EBIBS:GAR, SO:cb]	1904254	biosapiens	biosapiens	sequence	3	SO	polypeptide_structural_region	cytoplasmic_polypeptide_region
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001073	"Polypeptide region that is localized inside the cytoplasm." [EBIBS:GAR, SO:cb]	3173939	biosapiens,SOFA	SOFA	sequence	5	SO	polypeptide	cytoplasmic_polypeptide_region
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001073	"Polypeptide region that is localized inside the cytoplasm." [EBIBS:GAR, SO:cb]	3173940	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	cytoplasmic_polypeptide_region
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001073	"Polypeptide region that is localized inside the cytoplasm." [EBIBS:GAR, SO:cb]	4385783	SOFA	SOFA	sequence	6	SO	biological_region	cytoplasmic_polypeptide_region
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001073	"Polypeptide region that is localized inside the cytoplasm." [EBIBS:GAR, SO:cb]	5407434	SOFA	SOFA	sequence	7	SO	region	cytoplasmic_polypeptide_region
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001073	"Polypeptide region that is localized inside the cytoplasm." [EBIBS:GAR, SO:cb]	5996418	SOFA	SOFA	sequence	8	SO	sequence_feature	cytoplasmic_polypeptide_region
SO:0001074	\N	biosapiens	"Polypeptide region that is localized outside of a lipid bilayer and outside of the cytoplasm." [EBIBS:GAR, SO:cb]	SO:0001074	"Polypeptide region that is localized outside of a lipid bilayer and outside of the cytoplasm." [EBIBS:GAR, SO:cb]	45955	\N	biosapiens	sequence	0	SO	non_cytoplasmic_polypeptide_region	non_cytoplasmic_polypeptide_region
SO:0001072	SO:0001074	biosapiens	"Polypeptide region that is localized outside of a lipid bilayer." [EBIBS:GAR, SO:cb]	SO:0001074	"Polypeptide region that is localized outside of a lipid bilayer and outside of the cytoplasm." [EBIBS:GAR, SO:cb]	490664	biosapiens	biosapiens	sequence	1	SO	extramembrane_polypeptide_region	non_cytoplasmic_polypeptide_region
SO:0001070	SO:0001072	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001074	"Polypeptide region that is localized outside of a lipid bilayer and outside of the cytoplasm." [EBIBS:GAR, SO:cb]	1073199	biosapiens	biosapiens	sequence	2	SO	polypeptide_structural_region	non_cytoplasmic_polypeptide_region
SO:0001071	SO:0001072	biosapiens	"Arrangement of the polypeptide with respect to the lipid bilayer." [EBIBS:GAR]	SO:0001074	"Polypeptide region that is localized outside of a lipid bilayer and outside of the cytoplasm." [EBIBS:GAR, SO:cb]	1073200	biosapiens	biosapiens	sequence	2	SO	membrane_structure	non_cytoplasmic_polypeptide_region
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001074	"Polypeptide region that is localized outside of a lipid bilayer and outside of the cytoplasm." [EBIBS:GAR, SO:cb]	2928682	biosapiens	biosapiens,SOFA	sequence	4	SO	polypeptide_region	non_cytoplasmic_polypeptide_region
SO:0001070	SO:0001071	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001074	"Polypeptide region that is localized outside of a lipid bilayer and outside of the cytoplasm." [EBIBS:GAR, SO:cb]	1904256	biosapiens	biosapiens	sequence	3	SO	polypeptide_structural_region	non_cytoplasmic_polypeptide_region
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001074	"Polypeptide region that is localized outside of a lipid bilayer and outside of the cytoplasm." [EBIBS:GAR, SO:cb]	3173941	biosapiens,SOFA	SOFA	sequence	5	SO	polypeptide	non_cytoplasmic_polypeptide_region
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001074	"Polypeptide region that is localized outside of a lipid bilayer and outside of the cytoplasm." [EBIBS:GAR, SO:cb]	3173942	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	non_cytoplasmic_polypeptide_region
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001074	"Polypeptide region that is localized outside of a lipid bilayer and outside of the cytoplasm." [EBIBS:GAR, SO:cb]	4385785	SOFA	SOFA	sequence	6	SO	biological_region	non_cytoplasmic_polypeptide_region
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001074	"Polypeptide region that is localized outside of a lipid bilayer and outside of the cytoplasm." [EBIBS:GAR, SO:cb]	5407436	SOFA	SOFA	sequence	7	SO	region	non_cytoplasmic_polypeptide_region
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001074	"Polypeptide region that is localized outside of a lipid bilayer and outside of the cytoplasm." [EBIBS:GAR, SO:cb]	5996419	SOFA	SOFA	sequence	8	SO	sequence_feature	non_cytoplasmic_polypeptide_region
SO:0001075	\N	biosapiens	"Polypeptide region present in the lipid bilayer." [EBIBS:GAR]	SO:0001075	"Polypeptide region present in the lipid bilayer." [EBIBS:GAR]	45956	\N	biosapiens	sequence	0	SO	intramembrane_polypeptide_region	intramembrane_polypeptide_region
SO:0001070	SO:0001075	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001075	"Polypeptide region present in the lipid bilayer." [EBIBS:GAR]	490665	biosapiens	biosapiens	sequence	1	SO	polypeptide_structural_region	intramembrane_polypeptide_region
SO:0001071	SO:0001075	biosapiens	"Arrangement of the polypeptide with respect to the lipid bilayer." [EBIBS:GAR]	SO:0001075	"Polypeptide region present in the lipid bilayer." [EBIBS:GAR]	490666	biosapiens	biosapiens	sequence	1	SO	membrane_structure	intramembrane_polypeptide_region
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001075	"Polypeptide region present in the lipid bilayer." [EBIBS:GAR]	1904259	biosapiens	biosapiens,SOFA	sequence	3	SO	polypeptide_region	intramembrane_polypeptide_region
SO:0001070	SO:0001071	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001075	"Polypeptide region present in the lipid bilayer." [EBIBS:GAR]	1073202	biosapiens	biosapiens	sequence	2	SO	polypeptide_structural_region	intramembrane_polypeptide_region
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001075	"Polypeptide region present in the lipid bilayer." [EBIBS:GAR]	2018237	biosapiens,SOFA	SOFA	sequence	4	SO	polypeptide	intramembrane_polypeptide_region
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001075	"Polypeptide region present in the lipid bilayer." [EBIBS:GAR]	2018238	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	intramembrane_polypeptide_region
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001075	"Polypeptide region present in the lipid bilayer." [EBIBS:GAR]	3173943	SOFA	SOFA	sequence	5	SO	biological_region	intramembrane_polypeptide_region
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001075	"Polypeptide region present in the lipid bilayer." [EBIBS:GAR]	4385787	SOFA	SOFA	sequence	6	SO	region	intramembrane_polypeptide_region
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001075	"Polypeptide region present in the lipid bilayer." [EBIBS:GAR]	5180722	SOFA	SOFA	sequence	7	SO	sequence_feature	intramembrane_polypeptide_region
SO:0001076	\N	biosapiens	"Polypeptide region localized within the lipid bilayer where both ends traverse the same membrane." [EBIBS:GAR, SO:cb]	SO:0001076	"Polypeptide region localized within the lipid bilayer where both ends traverse the same membrane." [EBIBS:GAR, SO:cb]	45957	\N	biosapiens	sequence	0	SO	membrane_peptide_loop	membrane_peptide_loop
SO:0001075	SO:0001076	biosapiens	"Polypeptide region present in the lipid bilayer." [EBIBS:GAR]	SO:0001076	"Polypeptide region localized within the lipid bilayer where both ends traverse the same membrane." [EBIBS:GAR, SO:cb]	490667	biosapiens	biosapiens	sequence	1	SO	intramembrane_polypeptide_region	membrane_peptide_loop
SO:0001070	SO:0001075	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001076	"Polypeptide region localized within the lipid bilayer where both ends traverse the same membrane." [EBIBS:GAR, SO:cb]	1073203	biosapiens	biosapiens	sequence	2	SO	polypeptide_structural_region	membrane_peptide_loop
SO:0001071	SO:0001075	biosapiens	"Arrangement of the polypeptide with respect to the lipid bilayer." [EBIBS:GAR]	SO:0001076	"Polypeptide region localized within the lipid bilayer where both ends traverse the same membrane." [EBIBS:GAR, SO:cb]	1073204	biosapiens	biosapiens	sequence	2	SO	membrane_structure	membrane_peptide_loop
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001076	"Polypeptide region localized within the lipid bilayer where both ends traverse the same membrane." [EBIBS:GAR, SO:cb]	2928687	biosapiens	biosapiens,SOFA	sequence	4	SO	polypeptide_region	membrane_peptide_loop
SO:0001070	SO:0001071	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001076	"Polypeptide region localized within the lipid bilayer where both ends traverse the same membrane." [EBIBS:GAR, SO:cb]	1904261	biosapiens	biosapiens	sequence	3	SO	polypeptide_structural_region	membrane_peptide_loop
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001076	"Polypeptide region localized within the lipid bilayer where both ends traverse the same membrane." [EBIBS:GAR, SO:cb]	3173945	biosapiens,SOFA	SOFA	sequence	5	SO	polypeptide	membrane_peptide_loop
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001076	"Polypeptide region localized within the lipid bilayer where both ends traverse the same membrane." [EBIBS:GAR, SO:cb]	3173946	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	membrane_peptide_loop
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001076	"Polypeptide region localized within the lipid bilayer where both ends traverse the same membrane." [EBIBS:GAR, SO:cb]	4385789	SOFA	SOFA	sequence	6	SO	biological_region	membrane_peptide_loop
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001076	"Polypeptide region localized within the lipid bilayer where both ends traverse the same membrane." [EBIBS:GAR, SO:cb]	5407438	SOFA	SOFA	sequence	7	SO	region	membrane_peptide_loop
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001076	"Polypeptide region localized within the lipid bilayer where both ends traverse the same membrane." [EBIBS:GAR, SO:cb]	5996420	SOFA	SOFA	sequence	8	SO	sequence_feature	membrane_peptide_loop
SO:0001077	\N	biosapiens	"Polypeptide region traversing the lipid bilayer." [EBIBS:GAR, UniProt:curator_manual]	SO:0001077	"Polypeptide region traversing the lipid bilayer." [EBIBS:GAR, UniProt:curator_manual]	45958	\N	biosapiens	sequence	0	SO	transmembrane_polypeptide_region	transmembrane_polypeptide_region
SO:0001075	SO:0001077	biosapiens	"Polypeptide region present in the lipid bilayer." [EBIBS:GAR]	SO:0001077	"Polypeptide region traversing the lipid bilayer." [EBIBS:GAR, UniProt:curator_manual]	490668	biosapiens	biosapiens	sequence	1	SO	intramembrane_polypeptide_region	transmembrane_polypeptide_region
SO:0001070	SO:0001075	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001077	"Polypeptide region traversing the lipid bilayer." [EBIBS:GAR, UniProt:curator_manual]	1073205	biosapiens	biosapiens	sequence	2	SO	polypeptide_structural_region	transmembrane_polypeptide_region
SO:0001071	SO:0001075	biosapiens	"Arrangement of the polypeptide with respect to the lipid bilayer." [EBIBS:GAR]	SO:0001077	"Polypeptide region traversing the lipid bilayer." [EBIBS:GAR, UniProt:curator_manual]	1073206	biosapiens	biosapiens	sequence	2	SO	membrane_structure	transmembrane_polypeptide_region
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001077	"Polypeptide region traversing the lipid bilayer." [EBIBS:GAR, UniProt:curator_manual]	2928690	biosapiens	biosapiens,SOFA	sequence	4	SO	polypeptide_region	transmembrane_polypeptide_region
SO:0001070	SO:0001071	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001077	"Polypeptide region traversing the lipid bilayer." [EBIBS:GAR, UniProt:curator_manual]	1904263	biosapiens	biosapiens	sequence	3	SO	polypeptide_structural_region	transmembrane_polypeptide_region
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001077	"Polypeptide region traversing the lipid bilayer." [EBIBS:GAR, UniProt:curator_manual]	3173947	biosapiens,SOFA	SOFA	sequence	5	SO	polypeptide	transmembrane_polypeptide_region
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001077	"Polypeptide region traversing the lipid bilayer." [EBIBS:GAR, UniProt:curator_manual]	3173948	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	transmembrane_polypeptide_region
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001077	"Polypeptide region traversing the lipid bilayer." [EBIBS:GAR, UniProt:curator_manual]	4385791	SOFA	SOFA	sequence	6	SO	biological_region	transmembrane_polypeptide_region
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001077	"Polypeptide region traversing the lipid bilayer." [EBIBS:GAR, UniProt:curator_manual]	5407440	SOFA	SOFA	sequence	7	SO	region	transmembrane_polypeptide_region
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001077	"Polypeptide region traversing the lipid bilayer." [EBIBS:GAR, UniProt:curator_manual]	5996421	SOFA	SOFA	sequence	8	SO	sequence_feature	transmembrane_polypeptide_region
SO:0001078	\N	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001078	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	45959	\N	biosapiens	sequence	0	SO	polypeptide_secondary_structure	polypeptide_secondary_structure
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001078	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	490669	biosapiens	biosapiens	sequence	1	SO	polypeptide_structural_region	polypeptide_secondary_structure
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001078	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	1073207	biosapiens	biosapiens,SOFA	sequence	2	SO	polypeptide_region	polypeptide_secondary_structure
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001078	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	1904264	biosapiens,SOFA	SOFA	sequence	3	SO	polypeptide	polypeptide_secondary_structure
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001078	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	1904265	biosapiens,SOFA	SOFA	sequence	3	SO	biological_region	polypeptide_secondary_structure
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001078	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	2928691	SOFA	SOFA	sequence	4	SO	biological_region	polypeptide_secondary_structure
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001078	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	4001917	SOFA	SOFA	sequence	5	SO	region	polypeptide_secondary_structure
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001078	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	4385793	SOFA	SOFA	sequence	6	SO	sequence_feature	polypeptide_secondary_structure
SO:0001079	\N	biosapiens	"Motif is a three-dimensional structural element within the chain, which appears also in a variety of other molecules. Unlike a domain, a motif does not need to form a stable globular unit." [EBIBS:GAR]	SO:0001079	"Motif is a three-dimensional structural element within the chain, which appears also in a variety of other molecules. Unlike a domain, a motif does not need to form a stable globular unit." [EBIBS:GAR]	45960	\N	biosapiens	sequence	0	SO	polypeptide_structural_motif	polypeptide_structural_motif
SO:0001070	SO:0001079	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001079	"Motif is a three-dimensional structural element within the chain, which appears also in a variety of other molecules. Unlike a domain, a motif does not need to form a stable globular unit." [EBIBS:GAR]	490670	biosapiens	biosapiens	sequence	1	SO	polypeptide_structural_region	polypeptide_structural_motif
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001079	"Motif is a three-dimensional structural element within the chain, which appears also in a variety of other molecules. Unlike a domain, a motif does not need to form a stable globular unit." [EBIBS:GAR]	1073208	biosapiens	biosapiens,SOFA	sequence	2	SO	polypeptide_region	polypeptide_structural_motif
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001079	"Motif is a three-dimensional structural element within the chain, which appears also in a variety of other molecules. Unlike a domain, a motif does not need to form a stable globular unit." [EBIBS:GAR]	1904266	biosapiens,SOFA	SOFA	sequence	3	SO	polypeptide	polypeptide_structural_motif
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001079	"Motif is a three-dimensional structural element within the chain, which appears also in a variety of other molecules. Unlike a domain, a motif does not need to form a stable globular unit." [EBIBS:GAR]	1904267	biosapiens,SOFA	SOFA	sequence	3	SO	biological_region	polypeptide_structural_motif
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001079	"Motif is a three-dimensional structural element within the chain, which appears also in a variety of other molecules. Unlike a domain, a motif does not need to form a stable globular unit." [EBIBS:GAR]	2928693	SOFA	SOFA	sequence	4	SO	biological_region	polypeptide_structural_motif
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001079	"Motif is a three-dimensional structural element within the chain, which appears also in a variety of other molecules. Unlike a domain, a motif does not need to form a stable globular unit." [EBIBS:GAR]	4001919	SOFA	SOFA	sequence	5	SO	region	polypeptide_structural_motif
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001079	"Motif is a three-dimensional structural element within the chain, which appears also in a variety of other molecules. Unlike a domain, a motif does not need to form a stable globular unit." [EBIBS:GAR]	4385794	SOFA	SOFA	sequence	6	SO	sequence_feature	polypeptide_structural_motif
SO:0001080	\N	biosapiens	"A coiled coil is a structural motif in proteins, in which alpha-helices are coiled together like the strands of a rope." [EBIBS:GAR, UniProt:curation_manual]	SO:0001080	"A coiled coil is a structural motif in proteins, in which alpha-helices are coiled together like the strands of a rope." [EBIBS:GAR, UniProt:curation_manual]	45961	\N	biosapiens	sequence	0	SO	coiled_coil	coiled_coil
SO:0001079	SO:0001080	biosapiens	"Motif is a three-dimensional structural element within the chain, which appears also in a variety of other molecules. Unlike a domain, a motif does not need to form a stable globular unit." [EBIBS:GAR]	SO:0001080	"A coiled coil is a structural motif in proteins, in which alpha-helices are coiled together like the strands of a rope." [EBIBS:GAR, UniProt:curation_manual]	490671	biosapiens	biosapiens	sequence	1	SO	polypeptide_structural_motif	coiled_coil
SO:0001070	SO:0001079	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001080	"A coiled coil is a structural motif in proteins, in which alpha-helices are coiled together like the strands of a rope." [EBIBS:GAR, UniProt:curation_manual]	1073209	biosapiens	biosapiens	sequence	2	SO	polypeptide_structural_region	coiled_coil
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001080	"A coiled coil is a structural motif in proteins, in which alpha-helices are coiled together like the strands of a rope." [EBIBS:GAR, UniProt:curation_manual]	1904268	biosapiens	biosapiens,SOFA	sequence	3	SO	polypeptide_region	coiled_coil
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001080	"A coiled coil is a structural motif in proteins, in which alpha-helices are coiled together like the strands of a rope." [EBIBS:GAR, UniProt:curation_manual]	2928695	biosapiens,SOFA	SOFA	sequence	4	SO	polypeptide	coiled_coil
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001080	"A coiled coil is a structural motif in proteins, in which alpha-helices are coiled together like the strands of a rope." [EBIBS:GAR, UniProt:curation_manual]	2928696	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	coiled_coil
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001080	"A coiled coil is a structural motif in proteins, in which alpha-helices are coiled together like the strands of a rope." [EBIBS:GAR, UniProt:curation_manual]	4001921	SOFA	SOFA	sequence	5	SO	biological_region	coiled_coil
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001080	"A coiled coil is a structural motif in proteins, in which alpha-helices are coiled together like the strands of a rope." [EBIBS:GAR, UniProt:curation_manual]	4966324	SOFA	SOFA	sequence	6	SO	region	coiled_coil
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001080	"A coiled coil is a structural motif in proteins, in which alpha-helices are coiled together like the strands of a rope." [EBIBS:GAR, UniProt:curation_manual]	5407442	SOFA	SOFA	sequence	7	SO	sequence_feature	coiled_coil
SO:0001081	\N	biosapiens	"A motif comprising two helices separated by a turn." [EBIBS:GAR]	SO:0001081	"A motif comprising two helices separated by a turn." [EBIBS:GAR]	45962	\N	biosapiens	sequence	0	SO	helix_turn_helix	helix_turn_helix
SO:0001079	SO:0001081	biosapiens	"Motif is a three-dimensional structural element within the chain, which appears also in a variety of other molecules. Unlike a domain, a motif does not need to form a stable globular unit." [EBIBS:GAR]	SO:0001081	"A motif comprising two helices separated by a turn." [EBIBS:GAR]	490672	biosapiens	biosapiens	sequence	1	SO	polypeptide_structural_motif	helix_turn_helix
SO:0001070	SO:0001079	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001081	"A motif comprising two helices separated by a turn." [EBIBS:GAR]	1073210	biosapiens	biosapiens	sequence	2	SO	polypeptide_structural_region	helix_turn_helix
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001081	"A motif comprising two helices separated by a turn." [EBIBS:GAR]	1904269	biosapiens	biosapiens,SOFA	sequence	3	SO	polypeptide_region	helix_turn_helix
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001081	"A motif comprising two helices separated by a turn." [EBIBS:GAR]	2928697	biosapiens,SOFA	SOFA	sequence	4	SO	polypeptide	helix_turn_helix
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001081	"A motif comprising two helices separated by a turn." [EBIBS:GAR]	2928698	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	helix_turn_helix
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001081	"A motif comprising two helices separated by a turn." [EBIBS:GAR]	4001923	SOFA	SOFA	sequence	5	SO	biological_region	helix_turn_helix
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001081	"A motif comprising two helices separated by a turn." [EBIBS:GAR]	4966326	SOFA	SOFA	sequence	6	SO	region	helix_turn_helix
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001081	"A motif comprising two helices separated by a turn." [EBIBS:GAR]	5407443	SOFA	SOFA	sequence	7	SO	sequence_feature	helix_turn_helix
SO:0001082	\N	biosapiens	"Incompatibility in the sequence due to some experimental problem." [EBIBS:GAR]	SO:0001082	"Incompatibility in the sequence due to some experimental problem." [EBIBS:GAR]	45963	\N	biosapiens	sequence	0	SO	polypeptide_sequencing_information	polypeptide_sequencing_information
SO:0000700	SO:0001082	biosapiens	"A comment about the sequence." [SO:ke]	SO:0001082	"Incompatibility in the sequence due to some experimental problem." [EBIBS:GAR]	490673	biosapiens	SOFA	sequence	1	SO	remark	polypeptide_sequencing_information
SO:0001410	SO:0000700	biosapiens	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001082	"Incompatibility in the sequence due to some experimental problem." [EBIBS:GAR]	1073211	SOFA	SOFA	sequence	2	SO	experimental_feature	polypeptide_sequencing_information
SO:0000001	SO:0001410	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001082	"Incompatibility in the sequence due to some experimental problem." [EBIBS:GAR]	1904270	SOFA	SOFA	sequence	3	SO	region	polypeptide_sequencing_information
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001082	"Incompatibility in the sequence due to some experimental problem." [EBIBS:GAR]	2928699	SOFA	SOFA	sequence	4	SO	sequence_feature	polypeptide_sequencing_information
SO:0001083	\N	biosapiens	"Indicates that two consecutive residues in a fragment sequence are not consecutive in the full-length protein and that there are a number of unsequenced residues between them." [EBIBS:GAR, UniProt:curation_manual]	SO:0001083	"Indicates that two consecutive residues in a fragment sequence are not consecutive in the full-length protein and that there are a number of unsequenced residues between them." [EBIBS:GAR, UniProt:curation_manual]	45964	\N	biosapiens	sequence	0	SO	non_adjacent_residues	non_adjacent_residues
SO:0001082	SO:0001083	biosapiens	"Incompatibility in the sequence due to some experimental problem." [EBIBS:GAR]	SO:0001083	"Indicates that two consecutive residues in a fragment sequence are not consecutive in the full-length protein and that there are a number of unsequenced residues between them." [EBIBS:GAR, UniProt:curation_manual]	490674	biosapiens	biosapiens	sequence	1	SO	polypeptide_sequencing_information	non_adjacent_residues
SO:0000700	SO:0001082	biosapiens	"A comment about the sequence." [SO:ke]	SO:0001083	"Indicates that two consecutive residues in a fragment sequence are not consecutive in the full-length protein and that there are a number of unsequenced residues between them." [EBIBS:GAR, UniProt:curation_manual]	1073212	biosapiens	SOFA	sequence	2	SO	remark	non_adjacent_residues
SO:0001410	SO:0000700	biosapiens	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001083	"Indicates that two consecutive residues in a fragment sequence are not consecutive in the full-length protein and that there are a number of unsequenced residues between them." [EBIBS:GAR, UniProt:curation_manual]	1904271	SOFA	SOFA	sequence	3	SO	experimental_feature	non_adjacent_residues
SO:0000001	SO:0001410	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001083	"Indicates that two consecutive residues in a fragment sequence are not consecutive in the full-length protein and that there are a number of unsequenced residues between them." [EBIBS:GAR, UniProt:curation_manual]	2928700	SOFA	SOFA	sequence	4	SO	region	non_adjacent_residues
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001083	"Indicates that two consecutive residues in a fragment sequence are not consecutive in the full-length protein and that there are a number of unsequenced residues between them." [EBIBS:GAR, UniProt:curation_manual]	4001925	SOFA	SOFA	sequence	5	SO	sequence_feature	non_adjacent_residues
SO:0001084	\N	biosapiens	"The residue at an extremity of the sequence is not the terminal residue." [EBIBS:GAR, UniProt:curation_manual]	SO:0001084	"The residue at an extremity of the sequence is not the terminal residue." [EBIBS:GAR, UniProt:curation_manual]	45965	\N	biosapiens	sequence	0	SO	non_terminal_residue	non_terminal_residue
SO:0001082	SO:0001084	biosapiens	"Incompatibility in the sequence due to some experimental problem." [EBIBS:GAR]	SO:0001084	"The residue at an extremity of the sequence is not the terminal residue." [EBIBS:GAR, UniProt:curation_manual]	490675	biosapiens	biosapiens	sequence	1	SO	polypeptide_sequencing_information	non_terminal_residue
SO:0000700	SO:0001082	biosapiens	"A comment about the sequence." [SO:ke]	SO:0001084	"The residue at an extremity of the sequence is not the terminal residue." [EBIBS:GAR, UniProt:curation_manual]	1073213	biosapiens	SOFA	sequence	2	SO	remark	non_terminal_residue
SO:0001410	SO:0000700	biosapiens	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001084	"The residue at an extremity of the sequence is not the terminal residue." [EBIBS:GAR, UniProt:curation_manual]	1904272	SOFA	SOFA	sequence	3	SO	experimental_feature	non_terminal_residue
SO:0000001	SO:0001410	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001084	"The residue at an extremity of the sequence is not the terminal residue." [EBIBS:GAR, UniProt:curation_manual]	2928701	SOFA	SOFA	sequence	4	SO	region	non_terminal_residue
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001084	"The residue at an extremity of the sequence is not the terminal residue." [EBIBS:GAR, UniProt:curation_manual]	4001926	SOFA	SOFA	sequence	5	SO	sequence_feature	non_terminal_residue
SO:0001085	\N	biosapiens	"Different sources report differing sequences." [EBIBS:GAR, UniProt:curation_manual]	SO:0001085	"Different sources report differing sequences." [EBIBS:GAR, UniProt:curation_manual]	45966	\N	biosapiens	sequence	0	SO	sequence_conflict	sequence_conflict
SO:0001082	SO:0001085	biosapiens	"Incompatibility in the sequence due to some experimental problem." [EBIBS:GAR]	SO:0001085	"Different sources report differing sequences." [EBIBS:GAR, UniProt:curation_manual]	490676	biosapiens	biosapiens	sequence	1	SO	polypeptide_sequencing_information	sequence_conflict
SO:0000700	SO:0001082	biosapiens	"A comment about the sequence." [SO:ke]	SO:0001085	"Different sources report differing sequences." [EBIBS:GAR, UniProt:curation_manual]	1073214	biosapiens	SOFA	sequence	2	SO	remark	sequence_conflict
SO:0001410	SO:0000700	biosapiens	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001085	"Different sources report differing sequences." [EBIBS:GAR, UniProt:curation_manual]	1904273	SOFA	SOFA	sequence	3	SO	experimental_feature	sequence_conflict
SO:0000001	SO:0001410	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001085	"Different sources report differing sequences." [EBIBS:GAR, UniProt:curation_manual]	2928702	SOFA	SOFA	sequence	4	SO	region	sequence_conflict
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001085	"Different sources report differing sequences." [EBIBS:GAR, UniProt:curation_manual]	4001927	SOFA	SOFA	sequence	5	SO	sequence_feature	sequence_conflict
SO:0001086	\N	biosapiens	"Describes the positions in a sequence where the authors are unsure about the sequence assignment." [EBIBS:GAR, UniProt:curation_manual]	SO:0001086	"Describes the positions in a sequence where the authors are unsure about the sequence assignment." [EBIBS:GAR, UniProt:curation_manual]	45967	\N	biosapiens	sequence	0	SO	sequence_uncertainty	sequence_uncertainty
SO:0001082	SO:0001086	biosapiens	"Incompatibility in the sequence due to some experimental problem." [EBIBS:GAR]	SO:0001086	"Describes the positions in a sequence where the authors are unsure about the sequence assignment." [EBIBS:GAR, UniProt:curation_manual]	490677	biosapiens	biosapiens	sequence	1	SO	polypeptide_sequencing_information	sequence_uncertainty
SO:0000700	SO:0001082	biosapiens	"A comment about the sequence." [SO:ke]	SO:0001086	"Describes the positions in a sequence where the authors are unsure about the sequence assignment." [EBIBS:GAR, UniProt:curation_manual]	1073215	biosapiens	SOFA	sequence	2	SO	remark	sequence_uncertainty
SO:0001410	SO:0000700	biosapiens	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001086	"Describes the positions in a sequence where the authors are unsure about the sequence assignment." [EBIBS:GAR, UniProt:curation_manual]	1904274	SOFA	SOFA	sequence	3	SO	experimental_feature	sequence_uncertainty
SO:0000001	SO:0001410	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001086	"Describes the positions in a sequence where the authors are unsure about the sequence assignment." [EBIBS:GAR, UniProt:curation_manual]	2928703	SOFA	SOFA	sequence	4	SO	region	sequence_uncertainty
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001086	"Describes the positions in a sequence where the authors are unsure about the sequence assignment." [EBIBS:GAR, UniProt:curation_manual]	4001928	SOFA	SOFA	sequence	5	SO	sequence_feature	sequence_uncertainty
SO:0001089	\N	biosapiens	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001089	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	45968	\N	biosapiens	sequence	0	SO	post_translationally_modified_region	post_translationally_modified_region
SO:0100001	SO:0001089	biosapiens	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001089	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	490678	biosapiens	biosapiens	sequence	1	SO	biochemical_region_of_peptide	post_translationally_modified_region
SO:0001067	SO:0100001	biosapiens	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001089	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	1073216	biosapiens	biosapiens	sequence	2	SO	polypeptide_motif	post_translationally_modified_region
SO:0100021	SO:0001067	biosapiens	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001089	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	1904275	biosapiens	biosapiens	sequence	3	SO	polypeptide_conserved_region	post_translationally_modified_region
SO:0000839	SO:0100021	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001089	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	2928704	biosapiens	biosapiens,SOFA	sequence	4	SO	polypeptide_region	post_translationally_modified_region
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001089	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	4001929	biosapiens,SOFA	SOFA	sequence	5	SO	polypeptide	post_translationally_modified_region
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001089	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	4001930	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	post_translationally_modified_region
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001089	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	4966328	SOFA	SOFA	sequence	6	SO	biological_region	post_translationally_modified_region
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001089	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	5741138	SOFA	SOFA	sequence	7	SO	region	post_translationally_modified_region
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001089	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	6146651	SOFA	SOFA	sequence	8	SO	sequence_feature	post_translationally_modified_region
SO:0001092	\N	biosapiens	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with metal ions." [EBIBS:GAR, SO:cb, UniProt:curation_manual]	SO:0001092	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with metal ions." [EBIBS:GAR, SO:cb, UniProt:curation_manual]	45969	\N	biosapiens	sequence	0	SO	polypeptide_metal_contact	polypeptide_metal_contact
SO:0001656	SO:0001092	biosapiens	"A binding site that, in the molecule, interacts selectively and non-covalently with metal ions." [SO:cb]	SO:0001092	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with metal ions." [EBIBS:GAR, SO:cb, UniProt:curation_manual]	490679	biosapiens	\N	sequence	1	SO	metal_binding_site	polypeptide_metal_contact
SO:0100002	SO:0001092	biosapiens	"A region that is involved a contact with another molecule." [EBIBS:GAR]	SO:0001092	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with metal ions." [EBIBS:GAR, SO:cb, UniProt:curation_manual]	490680	biosapiens	biosapiens	sequence	1	SO	molecular_contact_region	polypeptide_metal_contact
SO:0000409	SO:0001656	biosapiens	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0001092	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with metal ions." [EBIBS:GAR, SO:cb, UniProt:curation_manual]	1073217	\N	biosapiens,SOFA	sequence	2	SO	binding_site	polypeptide_metal_contact
SO:0100001	SO:0100002	biosapiens	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001092	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with metal ions." [EBIBS:GAR, SO:cb, UniProt:curation_manual]	1073218	biosapiens	biosapiens	sequence	2	SO	biochemical_region_of_peptide	polypeptide_metal_contact
SO:0001411	SO:0000409	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001092	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with metal ions." [EBIBS:GAR, SO:cb, UniProt:curation_manual]	1904276	biosapiens,SOFA	SOFA	sequence	3	SO	biological_region	polypeptide_metal_contact
SO:0001067	SO:0100001	biosapiens	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001092	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with metal ions." [EBIBS:GAR, SO:cb, UniProt:curation_manual]	1904277	biosapiens	biosapiens	sequence	3	SO	polypeptide_motif	polypeptide_metal_contact
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001092	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with metal ions." [EBIBS:GAR, SO:cb, UniProt:curation_manual]	6311008	SOFA	SOFA	sequence	8	SO	region	polypeptide_metal_contact
SO:0100021	SO:0001067	biosapiens	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001092	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with metal ions." [EBIBS:GAR, SO:cb, UniProt:curation_manual]	2928706	biosapiens	biosapiens	sequence	4	SO	polypeptide_conserved_region	polypeptide_metal_contact
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001092	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with metal ions." [EBIBS:GAR, SO:cb, UniProt:curation_manual]	6409702	SOFA	SOFA	sequence	9	SO	sequence_feature	polypeptide_metal_contact
SO:0000839	SO:0100021	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001092	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with metal ions." [EBIBS:GAR, SO:cb, UniProt:curation_manual]	4001932	biosapiens	biosapiens,SOFA	sequence	5	SO	polypeptide_region	polypeptide_metal_contact
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001092	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with metal ions." [EBIBS:GAR, SO:cb, UniProt:curation_manual]	4966330	biosapiens,SOFA	SOFA	sequence	6	SO	polypeptide	polypeptide_metal_contact
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001092	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with metal ions." [EBIBS:GAR, SO:cb, UniProt:curation_manual]	4966331	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	polypeptide_metal_contact
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001092	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with metal ions." [EBIBS:GAR, SO:cb, UniProt:curation_manual]	5741140	SOFA	SOFA	sequence	7	SO	biological_region	polypeptide_metal_contact
SO:0001093	\N	biosapiens	"A binding site that, in the protein molecule, interacts selectively and non-covalently with polypeptide residues." [EBIBS:GAR, UniProt:Curation_manual]	SO:0001093	"A binding site that, in the protein molecule, interacts selectively and non-covalently with polypeptide residues." [EBIBS:GAR, UniProt:Curation_manual]	45970	\N	biosapiens	sequence	0	SO	protein_protein_contact	protein_protein_contact
SO:0000410	SO:0001093	biosapiens	"A binding site that, in the molecule, interacts selectively and non-covalently with polypeptide molecules." [SO:ke]	SO:0001093	"A binding site that, in the protein molecule, interacts selectively and non-covalently with polypeptide residues." [EBIBS:GAR, UniProt:Curation_manual]	490681	biosapiens	SOFA	sequence	1	SO	protein_binding_site	protein_protein_contact
SO:0100002	SO:0001093	biosapiens	"A region that is involved a contact with another molecule." [EBIBS:GAR]	SO:0001093	"A binding site that, in the protein molecule, interacts selectively and non-covalently with polypeptide residues." [EBIBS:GAR, UniProt:Curation_manual]	490682	biosapiens	biosapiens	sequence	1	SO	molecular_contact_region	protein_protein_contact
SO:0000409	SO:0000410	biosapiens	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0001093	"A binding site that, in the protein molecule, interacts selectively and non-covalently with polypeptide residues." [EBIBS:GAR, UniProt:Curation_manual]	1073219	SOFA	biosapiens,SOFA	sequence	2	SO	binding_site	protein_protein_contact
SO:0100001	SO:0100002	biosapiens	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001093	"A binding site that, in the protein molecule, interacts selectively and non-covalently with polypeptide residues." [EBIBS:GAR, UniProt:Curation_manual]	1073220	biosapiens	biosapiens	sequence	2	SO	biochemical_region_of_peptide	protein_protein_contact
SO:0001411	SO:0000409	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001093	"A binding site that, in the protein molecule, interacts selectively and non-covalently with polypeptide residues." [EBIBS:GAR, UniProt:Curation_manual]	1904278	biosapiens,SOFA	SOFA	sequence	3	SO	biological_region	protein_protein_contact
SO:0001067	SO:0100001	biosapiens	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001093	"A binding site that, in the protein molecule, interacts selectively and non-covalently with polypeptide residues." [EBIBS:GAR, UniProt:Curation_manual]	1904279	biosapiens	biosapiens	sequence	3	SO	polypeptide_motif	protein_protein_contact
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001093	"A binding site that, in the protein molecule, interacts selectively and non-covalently with polypeptide residues." [EBIBS:GAR, UniProt:Curation_manual]	6311009	SOFA	SOFA	sequence	8	SO	region	protein_protein_contact
SO:0100021	SO:0001067	biosapiens	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001093	"A binding site that, in the protein molecule, interacts selectively and non-covalently with polypeptide residues." [EBIBS:GAR, UniProt:Curation_manual]	2928708	biosapiens	biosapiens	sequence	4	SO	polypeptide_conserved_region	protein_protein_contact
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001093	"A binding site that, in the protein molecule, interacts selectively and non-covalently with polypeptide residues." [EBIBS:GAR, UniProt:Curation_manual]	6409703	SOFA	SOFA	sequence	9	SO	sequence_feature	protein_protein_contact
SO:0000839	SO:0100021	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001093	"A binding site that, in the protein molecule, interacts selectively and non-covalently with polypeptide residues." [EBIBS:GAR, UniProt:Curation_manual]	4001934	biosapiens	biosapiens,SOFA	sequence	5	SO	polypeptide_region	protein_protein_contact
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001093	"A binding site that, in the protein molecule, interacts selectively and non-covalently with polypeptide residues." [EBIBS:GAR, UniProt:Curation_manual]	4966332	biosapiens,SOFA	SOFA	sequence	6	SO	polypeptide	protein_protein_contact
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001093	"A binding site that, in the protein molecule, interacts selectively and non-covalently with polypeptide residues." [EBIBS:GAR, UniProt:Curation_manual]	4966333	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	protein_protein_contact
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001093	"A binding site that, in the protein molecule, interacts selectively and non-covalently with polypeptide residues." [EBIBS:GAR, UniProt:Curation_manual]	5741142	SOFA	SOFA	sequence	7	SO	biological_region	protein_protein_contact
SO:0001094	\N	biosapiens	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with calcium ions." [EBIBS:GAR]	SO:0001094	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with calcium ions." [EBIBS:GAR]	45971	\N	biosapiens	sequence	0	SO	polypeptide_calcium_ion_contact_site	polypeptide_calcium_ion_contact_site
SO:0001092	SO:0001094	biosapiens	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with metal ions." [EBIBS:GAR, SO:cb, UniProt:curation_manual]	SO:0001094	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with calcium ions." [EBIBS:GAR]	490683	biosapiens	biosapiens	sequence	1	SO	polypeptide_metal_contact	polypeptide_calcium_ion_contact_site
SO:0001656	SO:0001092	biosapiens	"A binding site that, in the molecule, interacts selectively and non-covalently with metal ions." [SO:cb]	SO:0001094	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with calcium ions." [EBIBS:GAR]	1073221	biosapiens	\N	sequence	2	SO	metal_binding_site	polypeptide_calcium_ion_contact_site
SO:0100002	SO:0001092	biosapiens	"A region that is involved a contact with another molecule." [EBIBS:GAR]	SO:0001094	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with calcium ions." [EBIBS:GAR]	1073222	biosapiens	biosapiens	sequence	2	SO	molecular_contact_region	polypeptide_calcium_ion_contact_site
SO:0000409	SO:0001656	biosapiens	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0001094	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with calcium ions." [EBIBS:GAR]	1904280	\N	biosapiens,SOFA	sequence	3	SO	binding_site	polypeptide_calcium_ion_contact_site
SO:0100001	SO:0100002	biosapiens	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001094	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with calcium ions." [EBIBS:GAR]	1904281	biosapiens	biosapiens	sequence	3	SO	biochemical_region_of_peptide	polypeptide_calcium_ion_contact_site
SO:0001411	SO:0000409	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001094	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with calcium ions." [EBIBS:GAR]	2928709	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	polypeptide_calcium_ion_contact_site
SO:0001067	SO:0100001	biosapiens	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001094	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with calcium ions." [EBIBS:GAR]	2928710	biosapiens	biosapiens	sequence	4	SO	polypeptide_motif	polypeptide_calcium_ion_contact_site
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001094	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with calcium ions." [EBIBS:GAR]	6699334	SOFA	SOFA	sequence	9	SO	region	polypeptide_calcium_ion_contact_site
SO:0100021	SO:0001067	biosapiens	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001094	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with calcium ions." [EBIBS:GAR]	4001936	biosapiens	biosapiens	sequence	5	SO	polypeptide_conserved_region	polypeptide_calcium_ion_contact_site
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001094	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with calcium ions." [EBIBS:GAR]	6807582	SOFA	SOFA	sequence	10	SO	sequence_feature	polypeptide_calcium_ion_contact_site
SO:0000839	SO:0100021	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001094	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with calcium ions." [EBIBS:GAR]	4966335	biosapiens	biosapiens,SOFA	sequence	6	SO	polypeptide_region	polypeptide_calcium_ion_contact_site
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001094	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with calcium ions." [EBIBS:GAR]	5741144	biosapiens,SOFA	SOFA	sequence	7	SO	polypeptide	polypeptide_calcium_ion_contact_site
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001094	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with calcium ions." [EBIBS:GAR]	5741145	biosapiens,SOFA	SOFA	sequence	7	SO	biological_region	polypeptide_calcium_ion_contact_site
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001094	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with calcium ions." [EBIBS:GAR]	6311010	SOFA	SOFA	sequence	8	SO	biological_region	polypeptide_calcium_ion_contact_site
SO:0001095	\N	biosapiens	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with cobalt ions." [EBIBS:GAR, SO:cb]	SO:0001095	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with cobalt ions." [EBIBS:GAR, SO:cb]	45972	\N	biosapiens	sequence	0	SO	polypeptide_cobalt_ion_contact_site	polypeptide_cobalt_ion_contact_site
SO:0001092	SO:0001095	biosapiens	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with metal ions." [EBIBS:GAR, SO:cb, UniProt:curation_manual]	SO:0001095	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with cobalt ions." [EBIBS:GAR, SO:cb]	490684	biosapiens	biosapiens	sequence	1	SO	polypeptide_metal_contact	polypeptide_cobalt_ion_contact_site
SO:0001656	SO:0001092	biosapiens	"A binding site that, in the molecule, interacts selectively and non-covalently with metal ions." [SO:cb]	SO:0001095	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with cobalt ions." [EBIBS:GAR, SO:cb]	1073223	biosapiens	\N	sequence	2	SO	metal_binding_site	polypeptide_cobalt_ion_contact_site
SO:0100002	SO:0001092	biosapiens	"A region that is involved a contact with another molecule." [EBIBS:GAR]	SO:0001095	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with cobalt ions." [EBIBS:GAR, SO:cb]	1073224	biosapiens	biosapiens	sequence	2	SO	molecular_contact_region	polypeptide_cobalt_ion_contact_site
SO:0000409	SO:0001656	biosapiens	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0001095	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with cobalt ions." [EBIBS:GAR, SO:cb]	1904282	\N	biosapiens,SOFA	sequence	3	SO	binding_site	polypeptide_cobalt_ion_contact_site
SO:0100001	SO:0100002	biosapiens	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001095	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with cobalt ions." [EBIBS:GAR, SO:cb]	1904283	biosapiens	biosapiens	sequence	3	SO	biochemical_region_of_peptide	polypeptide_cobalt_ion_contact_site
SO:0001411	SO:0000409	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001095	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with cobalt ions." [EBIBS:GAR, SO:cb]	2928711	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	polypeptide_cobalt_ion_contact_site
SO:0001067	SO:0100001	biosapiens	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001095	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with cobalt ions." [EBIBS:GAR, SO:cb]	2928712	biosapiens	biosapiens	sequence	4	SO	polypeptide_motif	polypeptide_cobalt_ion_contact_site
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001095	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with cobalt ions." [EBIBS:GAR, SO:cb]	6699335	SOFA	SOFA	sequence	9	SO	region	polypeptide_cobalt_ion_contact_site
SO:0100021	SO:0001067	biosapiens	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001095	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with cobalt ions." [EBIBS:GAR, SO:cb]	4001938	biosapiens	biosapiens	sequence	5	SO	polypeptide_conserved_region	polypeptide_cobalt_ion_contact_site
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001095	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with cobalt ions." [EBIBS:GAR, SO:cb]	6807583	SOFA	SOFA	sequence	10	SO	sequence_feature	polypeptide_cobalt_ion_contact_site
SO:0000839	SO:0100021	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001095	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with cobalt ions." [EBIBS:GAR, SO:cb]	4966337	biosapiens	biosapiens,SOFA	sequence	6	SO	polypeptide_region	polypeptide_cobalt_ion_contact_site
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001095	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with cobalt ions." [EBIBS:GAR, SO:cb]	5741146	biosapiens,SOFA	SOFA	sequence	7	SO	polypeptide	polypeptide_cobalt_ion_contact_site
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001095	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with cobalt ions." [EBIBS:GAR, SO:cb]	5741147	biosapiens,SOFA	SOFA	sequence	7	SO	biological_region	polypeptide_cobalt_ion_contact_site
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001095	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with cobalt ions." [EBIBS:GAR, SO:cb]	6311012	SOFA	SOFA	sequence	8	SO	biological_region	polypeptide_cobalt_ion_contact_site
SO:0001096	\N	biosapiens	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with copper ions." [EBIBS:GAR, SO:cb]	SO:0001096	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with copper ions." [EBIBS:GAR, SO:cb]	45973	\N	biosapiens	sequence	0	SO	polypeptide_copper_ion_contact_site	polypeptide_copper_ion_contact_site
SO:0001092	SO:0001096	biosapiens	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with metal ions." [EBIBS:GAR, SO:cb, UniProt:curation_manual]	SO:0001096	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with copper ions." [EBIBS:GAR, SO:cb]	490685	biosapiens	biosapiens	sequence	1	SO	polypeptide_metal_contact	polypeptide_copper_ion_contact_site
SO:0001656	SO:0001092	biosapiens	"A binding site that, in the molecule, interacts selectively and non-covalently with metal ions." [SO:cb]	SO:0001096	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with copper ions." [EBIBS:GAR, SO:cb]	1073225	biosapiens	\N	sequence	2	SO	metal_binding_site	polypeptide_copper_ion_contact_site
SO:0100002	SO:0001092	biosapiens	"A region that is involved a contact with another molecule." [EBIBS:GAR]	SO:0001096	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with copper ions." [EBIBS:GAR, SO:cb]	1073226	biosapiens	biosapiens	sequence	2	SO	molecular_contact_region	polypeptide_copper_ion_contact_site
SO:0000409	SO:0001656	biosapiens	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0001096	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with copper ions." [EBIBS:GAR, SO:cb]	1904284	\N	biosapiens,SOFA	sequence	3	SO	binding_site	polypeptide_copper_ion_contact_site
SO:0100001	SO:0100002	biosapiens	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001096	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with copper ions." [EBIBS:GAR, SO:cb]	1904285	biosapiens	biosapiens	sequence	3	SO	biochemical_region_of_peptide	polypeptide_copper_ion_contact_site
SO:0001411	SO:0000409	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001096	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with copper ions." [EBIBS:GAR, SO:cb]	2928713	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	polypeptide_copper_ion_contact_site
SO:0001067	SO:0100001	biosapiens	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001096	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with copper ions." [EBIBS:GAR, SO:cb]	2928714	biosapiens	biosapiens	sequence	4	SO	polypeptide_motif	polypeptide_copper_ion_contact_site
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001096	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with copper ions." [EBIBS:GAR, SO:cb]	6699336	SOFA	SOFA	sequence	9	SO	region	polypeptide_copper_ion_contact_site
SO:0100021	SO:0001067	biosapiens	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001096	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with copper ions." [EBIBS:GAR, SO:cb]	4001940	biosapiens	biosapiens	sequence	5	SO	polypeptide_conserved_region	polypeptide_copper_ion_contact_site
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001096	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with copper ions." [EBIBS:GAR, SO:cb]	6807584	SOFA	SOFA	sequence	10	SO	sequence_feature	polypeptide_copper_ion_contact_site
SO:0000839	SO:0100021	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001096	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with copper ions." [EBIBS:GAR, SO:cb]	4966339	biosapiens	biosapiens,SOFA	sequence	6	SO	polypeptide_region	polypeptide_copper_ion_contact_site
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001096	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with copper ions." [EBIBS:GAR, SO:cb]	5741148	biosapiens,SOFA	SOFA	sequence	7	SO	polypeptide	polypeptide_copper_ion_contact_site
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001096	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with copper ions." [EBIBS:GAR, SO:cb]	5741149	biosapiens,SOFA	SOFA	sequence	7	SO	biological_region	polypeptide_copper_ion_contact_site
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001096	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with copper ions." [EBIBS:GAR, SO:cb]	6311014	SOFA	SOFA	sequence	8	SO	biological_region	polypeptide_copper_ion_contact_site
SO:0001097	\N	biosapiens	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with iron ions." [EBIBS:GAR, SO:cb]	SO:0001097	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with iron ions." [EBIBS:GAR, SO:cb]	45974	\N	biosapiens	sequence	0	SO	polypeptide_iron_ion_contact_site	polypeptide_iron_ion_contact_site
SO:0001092	SO:0001097	biosapiens	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with metal ions." [EBIBS:GAR, SO:cb, UniProt:curation_manual]	SO:0001097	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with iron ions." [EBIBS:GAR, SO:cb]	490686	biosapiens	biosapiens	sequence	1	SO	polypeptide_metal_contact	polypeptide_iron_ion_contact_site
SO:0001656	SO:0001092	biosapiens	"A binding site that, in the molecule, interacts selectively and non-covalently with metal ions." [SO:cb]	SO:0001097	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with iron ions." [EBIBS:GAR, SO:cb]	1073227	biosapiens	\N	sequence	2	SO	metal_binding_site	polypeptide_iron_ion_contact_site
SO:0100002	SO:0001092	biosapiens	"A region that is involved a contact with another molecule." [EBIBS:GAR]	SO:0001097	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with iron ions." [EBIBS:GAR, SO:cb]	1073228	biosapiens	biosapiens	sequence	2	SO	molecular_contact_region	polypeptide_iron_ion_contact_site
SO:0000409	SO:0001656	biosapiens	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0001097	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with iron ions." [EBIBS:GAR, SO:cb]	1904286	\N	biosapiens,SOFA	sequence	3	SO	binding_site	polypeptide_iron_ion_contact_site
SO:0100001	SO:0100002	biosapiens	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001097	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with iron ions." [EBIBS:GAR, SO:cb]	1904287	biosapiens	biosapiens	sequence	3	SO	biochemical_region_of_peptide	polypeptide_iron_ion_contact_site
SO:0001411	SO:0000409	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001097	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with iron ions." [EBIBS:GAR, SO:cb]	2928715	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	polypeptide_iron_ion_contact_site
SO:0001067	SO:0100001	biosapiens	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001097	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with iron ions." [EBIBS:GAR, SO:cb]	2928716	biosapiens	biosapiens	sequence	4	SO	polypeptide_motif	polypeptide_iron_ion_contact_site
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001097	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with iron ions." [EBIBS:GAR, SO:cb]	6699337	SOFA	SOFA	sequence	9	SO	region	polypeptide_iron_ion_contact_site
SO:0100021	SO:0001067	biosapiens	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001097	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with iron ions." [EBIBS:GAR, SO:cb]	4001942	biosapiens	biosapiens	sequence	5	SO	polypeptide_conserved_region	polypeptide_iron_ion_contact_site
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001097	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with iron ions." [EBIBS:GAR, SO:cb]	6807585	SOFA	SOFA	sequence	10	SO	sequence_feature	polypeptide_iron_ion_contact_site
SO:0000839	SO:0100021	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001097	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with iron ions." [EBIBS:GAR, SO:cb]	4966341	biosapiens	biosapiens,SOFA	sequence	6	SO	polypeptide_region	polypeptide_iron_ion_contact_site
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001097	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with iron ions." [EBIBS:GAR, SO:cb]	5741150	biosapiens,SOFA	SOFA	sequence	7	SO	polypeptide	polypeptide_iron_ion_contact_site
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001097	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with iron ions." [EBIBS:GAR, SO:cb]	5741151	biosapiens,SOFA	SOFA	sequence	7	SO	biological_region	polypeptide_iron_ion_contact_site
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001097	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with iron ions." [EBIBS:GAR, SO:cb]	6311016	SOFA	SOFA	sequence	8	SO	biological_region	polypeptide_iron_ion_contact_site
SO:0001098	\N	biosapiens	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with magnesium ions." [EBIBS:GAR, SO:cb]	SO:0001098	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with magnesium ions." [EBIBS:GAR, SO:cb]	45975	\N	biosapiens	sequence	0	SO	polypeptide_magnesium_ion_contact_site	polypeptide_magnesium_ion_contact_site
SO:0001092	SO:0001098	biosapiens	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with metal ions." [EBIBS:GAR, SO:cb, UniProt:curation_manual]	SO:0001098	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with magnesium ions." [EBIBS:GAR, SO:cb]	490687	biosapiens	biosapiens	sequence	1	SO	polypeptide_metal_contact	polypeptide_magnesium_ion_contact_site
SO:0001656	SO:0001092	biosapiens	"A binding site that, in the molecule, interacts selectively and non-covalently with metal ions." [SO:cb]	SO:0001098	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with magnesium ions." [EBIBS:GAR, SO:cb]	1073229	biosapiens	\N	sequence	2	SO	metal_binding_site	polypeptide_magnesium_ion_contact_site
SO:0100002	SO:0001092	biosapiens	"A region that is involved a contact with another molecule." [EBIBS:GAR]	SO:0001098	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with magnesium ions." [EBIBS:GAR, SO:cb]	1073230	biosapiens	biosapiens	sequence	2	SO	molecular_contact_region	polypeptide_magnesium_ion_contact_site
SO:0000409	SO:0001656	biosapiens	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0001098	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with magnesium ions." [EBIBS:GAR, SO:cb]	1904288	\N	biosapiens,SOFA	sequence	3	SO	binding_site	polypeptide_magnesium_ion_contact_site
SO:0100001	SO:0100002	biosapiens	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001098	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with magnesium ions." [EBIBS:GAR, SO:cb]	1904289	biosapiens	biosapiens	sequence	3	SO	biochemical_region_of_peptide	polypeptide_magnesium_ion_contact_site
SO:0001411	SO:0000409	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001098	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with magnesium ions." [EBIBS:GAR, SO:cb]	2928717	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	polypeptide_magnesium_ion_contact_site
SO:0001067	SO:0100001	biosapiens	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001098	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with magnesium ions." [EBIBS:GAR, SO:cb]	2928718	biosapiens	biosapiens	sequence	4	SO	polypeptide_motif	polypeptide_magnesium_ion_contact_site
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001098	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with magnesium ions." [EBIBS:GAR, SO:cb]	6699338	SOFA	SOFA	sequence	9	SO	region	polypeptide_magnesium_ion_contact_site
SO:0100021	SO:0001067	biosapiens	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001098	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with magnesium ions." [EBIBS:GAR, SO:cb]	4001944	biosapiens	biosapiens	sequence	5	SO	polypeptide_conserved_region	polypeptide_magnesium_ion_contact_site
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001098	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with magnesium ions." [EBIBS:GAR, SO:cb]	6807586	SOFA	SOFA	sequence	10	SO	sequence_feature	polypeptide_magnesium_ion_contact_site
SO:0000839	SO:0100021	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001098	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with magnesium ions." [EBIBS:GAR, SO:cb]	4966343	biosapiens	biosapiens,SOFA	sequence	6	SO	polypeptide_region	polypeptide_magnesium_ion_contact_site
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001098	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with magnesium ions." [EBIBS:GAR, SO:cb]	5741152	biosapiens,SOFA	SOFA	sequence	7	SO	polypeptide	polypeptide_magnesium_ion_contact_site
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001098	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with magnesium ions." [EBIBS:GAR, SO:cb]	5741153	biosapiens,SOFA	SOFA	sequence	7	SO	biological_region	polypeptide_magnesium_ion_contact_site
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001098	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with magnesium ions." [EBIBS:GAR, SO:cb]	6311018	SOFA	SOFA	sequence	8	SO	biological_region	polypeptide_magnesium_ion_contact_site
SO:0001099	\N	biosapiens	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with manganese ions." [EBIBS:GAR, SO:cb]	SO:0001099	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with manganese ions." [EBIBS:GAR, SO:cb]	45976	\N	biosapiens	sequence	0	SO	polypeptide_manganese_ion_contact_site	polypeptide_manganese_ion_contact_site
SO:0001092	SO:0001099	biosapiens	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with metal ions." [EBIBS:GAR, SO:cb, UniProt:curation_manual]	SO:0001099	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with manganese ions." [EBIBS:GAR, SO:cb]	490688	biosapiens	biosapiens	sequence	1	SO	polypeptide_metal_contact	polypeptide_manganese_ion_contact_site
SO:0001656	SO:0001092	biosapiens	"A binding site that, in the molecule, interacts selectively and non-covalently with metal ions." [SO:cb]	SO:0001099	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with manganese ions." [EBIBS:GAR, SO:cb]	1073231	biosapiens	\N	sequence	2	SO	metal_binding_site	polypeptide_manganese_ion_contact_site
SO:0100002	SO:0001092	biosapiens	"A region that is involved a contact with another molecule." [EBIBS:GAR]	SO:0001099	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with manganese ions." [EBIBS:GAR, SO:cb]	1073232	biosapiens	biosapiens	sequence	2	SO	molecular_contact_region	polypeptide_manganese_ion_contact_site
SO:0000409	SO:0001656	biosapiens	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0001099	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with manganese ions." [EBIBS:GAR, SO:cb]	1904290	\N	biosapiens,SOFA	sequence	3	SO	binding_site	polypeptide_manganese_ion_contact_site
SO:0100001	SO:0100002	biosapiens	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001099	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with manganese ions." [EBIBS:GAR, SO:cb]	1904291	biosapiens	biosapiens	sequence	3	SO	biochemical_region_of_peptide	polypeptide_manganese_ion_contact_site
SO:0001411	SO:0000409	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001099	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with manganese ions." [EBIBS:GAR, SO:cb]	2928719	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	polypeptide_manganese_ion_contact_site
SO:0001067	SO:0100001	biosapiens	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001099	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with manganese ions." [EBIBS:GAR, SO:cb]	2928720	biosapiens	biosapiens	sequence	4	SO	polypeptide_motif	polypeptide_manganese_ion_contact_site
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001099	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with manganese ions." [EBIBS:GAR, SO:cb]	6699339	SOFA	SOFA	sequence	9	SO	region	polypeptide_manganese_ion_contact_site
SO:0100021	SO:0001067	biosapiens	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001099	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with manganese ions." [EBIBS:GAR, SO:cb]	4001946	biosapiens	biosapiens	sequence	5	SO	polypeptide_conserved_region	polypeptide_manganese_ion_contact_site
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001099	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with manganese ions." [EBIBS:GAR, SO:cb]	6807587	SOFA	SOFA	sequence	10	SO	sequence_feature	polypeptide_manganese_ion_contact_site
SO:0000839	SO:0100021	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001099	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with manganese ions." [EBIBS:GAR, SO:cb]	4966345	biosapiens	biosapiens,SOFA	sequence	6	SO	polypeptide_region	polypeptide_manganese_ion_contact_site
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001099	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with manganese ions." [EBIBS:GAR, SO:cb]	5741154	biosapiens,SOFA	SOFA	sequence	7	SO	polypeptide	polypeptide_manganese_ion_contact_site
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001099	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with manganese ions." [EBIBS:GAR, SO:cb]	5741155	biosapiens,SOFA	SOFA	sequence	7	SO	biological_region	polypeptide_manganese_ion_contact_site
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001099	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with manganese ions." [EBIBS:GAR, SO:cb]	6311020	SOFA	SOFA	sequence	8	SO	biological_region	polypeptide_manganese_ion_contact_site
SO:0001100	\N	biosapiens	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with molybdenum ions." [EBIBS:GAR, SO:cb]	SO:0001100	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with molybdenum ions." [EBIBS:GAR, SO:cb]	45977	\N	biosapiens	sequence	0	SO	polypeptide_molybdenum_ion_contact_site	polypeptide_molybdenum_ion_contact_site
SO:0001092	SO:0001100	biosapiens	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with metal ions." [EBIBS:GAR, SO:cb, UniProt:curation_manual]	SO:0001100	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with molybdenum ions." [EBIBS:GAR, SO:cb]	490689	biosapiens	biosapiens	sequence	1	SO	polypeptide_metal_contact	polypeptide_molybdenum_ion_contact_site
SO:0001656	SO:0001092	biosapiens	"A binding site that, in the molecule, interacts selectively and non-covalently with metal ions." [SO:cb]	SO:0001100	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with molybdenum ions." [EBIBS:GAR, SO:cb]	1073233	biosapiens	\N	sequence	2	SO	metal_binding_site	polypeptide_molybdenum_ion_contact_site
SO:0100002	SO:0001092	biosapiens	"A region that is involved a contact with another molecule." [EBIBS:GAR]	SO:0001100	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with molybdenum ions." [EBIBS:GAR, SO:cb]	1073234	biosapiens	biosapiens	sequence	2	SO	molecular_contact_region	polypeptide_molybdenum_ion_contact_site
SO:0000409	SO:0001656	biosapiens	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0001100	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with molybdenum ions." [EBIBS:GAR, SO:cb]	1904292	\N	biosapiens,SOFA	sequence	3	SO	binding_site	polypeptide_molybdenum_ion_contact_site
SO:0100001	SO:0100002	biosapiens	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001100	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with molybdenum ions." [EBIBS:GAR, SO:cb]	1904293	biosapiens	biosapiens	sequence	3	SO	biochemical_region_of_peptide	polypeptide_molybdenum_ion_contact_site
SO:0001411	SO:0000409	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001100	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with molybdenum ions." [EBIBS:GAR, SO:cb]	2928721	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	polypeptide_molybdenum_ion_contact_site
SO:0001067	SO:0100001	biosapiens	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001100	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with molybdenum ions." [EBIBS:GAR, SO:cb]	2928722	biosapiens	biosapiens	sequence	4	SO	polypeptide_motif	polypeptide_molybdenum_ion_contact_site
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001100	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with molybdenum ions." [EBIBS:GAR, SO:cb]	6699340	SOFA	SOFA	sequence	9	SO	region	polypeptide_molybdenum_ion_contact_site
SO:0100021	SO:0001067	biosapiens	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001100	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with molybdenum ions." [EBIBS:GAR, SO:cb]	4001948	biosapiens	biosapiens	sequence	5	SO	polypeptide_conserved_region	polypeptide_molybdenum_ion_contact_site
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001100	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with molybdenum ions." [EBIBS:GAR, SO:cb]	6807588	SOFA	SOFA	sequence	10	SO	sequence_feature	polypeptide_molybdenum_ion_contact_site
SO:0000839	SO:0100021	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001100	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with molybdenum ions." [EBIBS:GAR, SO:cb]	4966347	biosapiens	biosapiens,SOFA	sequence	6	SO	polypeptide_region	polypeptide_molybdenum_ion_contact_site
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001100	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with molybdenum ions." [EBIBS:GAR, SO:cb]	5741156	biosapiens,SOFA	SOFA	sequence	7	SO	polypeptide	polypeptide_molybdenum_ion_contact_site
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001100	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with molybdenum ions." [EBIBS:GAR, SO:cb]	5741157	biosapiens,SOFA	SOFA	sequence	7	SO	biological_region	polypeptide_molybdenum_ion_contact_site
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001100	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with molybdenum ions." [EBIBS:GAR, SO:cb]	6311022	SOFA	SOFA	sequence	8	SO	biological_region	polypeptide_molybdenum_ion_contact_site
SO:0001101	\N	biosapiens	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with nickel ions." [EBIBS:GAR]	SO:0001101	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with nickel ions." [EBIBS:GAR]	45978	\N	biosapiens	sequence	0	SO	polypeptide_nickel_ion_contact_site	polypeptide_nickel_ion_contact_site
SO:0001092	SO:0001101	biosapiens	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with metal ions." [EBIBS:GAR, SO:cb, UniProt:curation_manual]	SO:0001101	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with nickel ions." [EBIBS:GAR]	490690	biosapiens	biosapiens	sequence	1	SO	polypeptide_metal_contact	polypeptide_nickel_ion_contact_site
SO:0001656	SO:0001092	biosapiens	"A binding site that, in the molecule, interacts selectively and non-covalently with metal ions." [SO:cb]	SO:0001101	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with nickel ions." [EBIBS:GAR]	1073235	biosapiens	\N	sequence	2	SO	metal_binding_site	polypeptide_nickel_ion_contact_site
SO:0100002	SO:0001092	biosapiens	"A region that is involved a contact with another molecule." [EBIBS:GAR]	SO:0001101	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with nickel ions." [EBIBS:GAR]	1073236	biosapiens	biosapiens	sequence	2	SO	molecular_contact_region	polypeptide_nickel_ion_contact_site
SO:0000409	SO:0001656	biosapiens	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0001101	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with nickel ions." [EBIBS:GAR]	1904294	\N	biosapiens,SOFA	sequence	3	SO	binding_site	polypeptide_nickel_ion_contact_site
SO:0100001	SO:0100002	biosapiens	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001101	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with nickel ions." [EBIBS:GAR]	1904295	biosapiens	biosapiens	sequence	3	SO	biochemical_region_of_peptide	polypeptide_nickel_ion_contact_site
SO:0001411	SO:0000409	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001101	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with nickel ions." [EBIBS:GAR]	2928723	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	polypeptide_nickel_ion_contact_site
SO:0001067	SO:0100001	biosapiens	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001101	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with nickel ions." [EBIBS:GAR]	2928724	biosapiens	biosapiens	sequence	4	SO	polypeptide_motif	polypeptide_nickel_ion_contact_site
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001101	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with nickel ions." [EBIBS:GAR]	6699341	SOFA	SOFA	sequence	9	SO	region	polypeptide_nickel_ion_contact_site
SO:0100021	SO:0001067	biosapiens	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001101	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with nickel ions." [EBIBS:GAR]	4001950	biosapiens	biosapiens	sequence	5	SO	polypeptide_conserved_region	polypeptide_nickel_ion_contact_site
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001101	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with nickel ions." [EBIBS:GAR]	6807589	SOFA	SOFA	sequence	10	SO	sequence_feature	polypeptide_nickel_ion_contact_site
SO:0000839	SO:0100021	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001101	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with nickel ions." [EBIBS:GAR]	4966349	biosapiens	biosapiens,SOFA	sequence	6	SO	polypeptide_region	polypeptide_nickel_ion_contact_site
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001101	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with nickel ions." [EBIBS:GAR]	5741158	biosapiens,SOFA	SOFA	sequence	7	SO	polypeptide	polypeptide_nickel_ion_contact_site
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001101	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with nickel ions." [EBIBS:GAR]	5741159	biosapiens,SOFA	SOFA	sequence	7	SO	biological_region	polypeptide_nickel_ion_contact_site
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001101	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with nickel ions." [EBIBS:GAR]	6311024	SOFA	SOFA	sequence	8	SO	biological_region	polypeptide_nickel_ion_contact_site
SO:0001102	\N	biosapiens	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with tungsten ions." [EBIBS:GAR, SO:cb]	SO:0001102	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with tungsten ions." [EBIBS:GAR, SO:cb]	45979	\N	biosapiens	sequence	0	SO	polypeptide_tungsten_ion_contact_site	polypeptide_tungsten_ion_contact_site
SO:0001092	SO:0001102	biosapiens	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with metal ions." [EBIBS:GAR, SO:cb, UniProt:curation_manual]	SO:0001102	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with tungsten ions." [EBIBS:GAR, SO:cb]	490691	biosapiens	biosapiens	sequence	1	SO	polypeptide_metal_contact	polypeptide_tungsten_ion_contact_site
SO:0001656	SO:0001092	biosapiens	"A binding site that, in the molecule, interacts selectively and non-covalently with metal ions." [SO:cb]	SO:0001102	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with tungsten ions." [EBIBS:GAR, SO:cb]	1073237	biosapiens	\N	sequence	2	SO	metal_binding_site	polypeptide_tungsten_ion_contact_site
SO:0100002	SO:0001092	biosapiens	"A region that is involved a contact with another molecule." [EBIBS:GAR]	SO:0001102	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with tungsten ions." [EBIBS:GAR, SO:cb]	1073238	biosapiens	biosapiens	sequence	2	SO	molecular_contact_region	polypeptide_tungsten_ion_contact_site
SO:0000409	SO:0001656	biosapiens	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0001102	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with tungsten ions." [EBIBS:GAR, SO:cb]	1904296	\N	biosapiens,SOFA	sequence	3	SO	binding_site	polypeptide_tungsten_ion_contact_site
SO:0100001	SO:0100002	biosapiens	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001102	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with tungsten ions." [EBIBS:GAR, SO:cb]	1904297	biosapiens	biosapiens	sequence	3	SO	biochemical_region_of_peptide	polypeptide_tungsten_ion_contact_site
SO:0001411	SO:0000409	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001102	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with tungsten ions." [EBIBS:GAR, SO:cb]	2928725	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	polypeptide_tungsten_ion_contact_site
SO:0001067	SO:0100001	biosapiens	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001102	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with tungsten ions." [EBIBS:GAR, SO:cb]	2928726	biosapiens	biosapiens	sequence	4	SO	polypeptide_motif	polypeptide_tungsten_ion_contact_site
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001102	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with tungsten ions." [EBIBS:GAR, SO:cb]	6699342	SOFA	SOFA	sequence	9	SO	region	polypeptide_tungsten_ion_contact_site
SO:0100021	SO:0001067	biosapiens	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001102	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with tungsten ions." [EBIBS:GAR, SO:cb]	4001952	biosapiens	biosapiens	sequence	5	SO	polypeptide_conserved_region	polypeptide_tungsten_ion_contact_site
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001102	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with tungsten ions." [EBIBS:GAR, SO:cb]	6807590	SOFA	SOFA	sequence	10	SO	sequence_feature	polypeptide_tungsten_ion_contact_site
SO:0000839	SO:0100021	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001102	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with tungsten ions." [EBIBS:GAR, SO:cb]	4966351	biosapiens	biosapiens,SOFA	sequence	6	SO	polypeptide_region	polypeptide_tungsten_ion_contact_site
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001102	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with tungsten ions." [EBIBS:GAR, SO:cb]	5741160	biosapiens,SOFA	SOFA	sequence	7	SO	polypeptide	polypeptide_tungsten_ion_contact_site
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001102	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with tungsten ions." [EBIBS:GAR, SO:cb]	5741161	biosapiens,SOFA	SOFA	sequence	7	SO	biological_region	polypeptide_tungsten_ion_contact_site
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001102	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with tungsten ions." [EBIBS:GAR, SO:cb]	6311026	SOFA	SOFA	sequence	8	SO	biological_region	polypeptide_tungsten_ion_contact_site
SO:0001103	\N	biosapiens	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with zinc ions." [EBIBS:GAR, SO:cb]	SO:0001103	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with zinc ions." [EBIBS:GAR, SO:cb]	45980	\N	biosapiens	sequence	0	SO	polypeptide_zinc_ion_contact_site	polypeptide_zinc_ion_contact_site
SO:0001092	SO:0001103	biosapiens	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with metal ions." [EBIBS:GAR, SO:cb, UniProt:curation_manual]	SO:0001103	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with zinc ions." [EBIBS:GAR, SO:cb]	490692	biosapiens	biosapiens	sequence	1	SO	polypeptide_metal_contact	polypeptide_zinc_ion_contact_site
SO:0001656	SO:0001092	biosapiens	"A binding site that, in the molecule, interacts selectively and non-covalently with metal ions." [SO:cb]	SO:0001103	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with zinc ions." [EBIBS:GAR, SO:cb]	1073239	biosapiens	\N	sequence	2	SO	metal_binding_site	polypeptide_zinc_ion_contact_site
SO:0100002	SO:0001092	biosapiens	"A region that is involved a contact with another molecule." [EBIBS:GAR]	SO:0001103	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with zinc ions." [EBIBS:GAR, SO:cb]	1073240	biosapiens	biosapiens	sequence	2	SO	molecular_contact_region	polypeptide_zinc_ion_contact_site
SO:0000409	SO:0001656	biosapiens	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0001103	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with zinc ions." [EBIBS:GAR, SO:cb]	1904298	\N	biosapiens,SOFA	sequence	3	SO	binding_site	polypeptide_zinc_ion_contact_site
SO:0100001	SO:0100002	biosapiens	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001103	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with zinc ions." [EBIBS:GAR, SO:cb]	1904299	biosapiens	biosapiens	sequence	3	SO	biochemical_region_of_peptide	polypeptide_zinc_ion_contact_site
SO:0001411	SO:0000409	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001103	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with zinc ions." [EBIBS:GAR, SO:cb]	2928727	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	polypeptide_zinc_ion_contact_site
SO:0001067	SO:0100001	biosapiens	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001103	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with zinc ions." [EBIBS:GAR, SO:cb]	2928728	biosapiens	biosapiens	sequence	4	SO	polypeptide_motif	polypeptide_zinc_ion_contact_site
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001103	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with zinc ions." [EBIBS:GAR, SO:cb]	6699343	SOFA	SOFA	sequence	9	SO	region	polypeptide_zinc_ion_contact_site
SO:0100021	SO:0001067	biosapiens	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001103	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with zinc ions." [EBIBS:GAR, SO:cb]	4001954	biosapiens	biosapiens	sequence	5	SO	polypeptide_conserved_region	polypeptide_zinc_ion_contact_site
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001103	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with zinc ions." [EBIBS:GAR, SO:cb]	6807591	SOFA	SOFA	sequence	10	SO	sequence_feature	polypeptide_zinc_ion_contact_site
SO:0000839	SO:0100021	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001103	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with zinc ions." [EBIBS:GAR, SO:cb]	4966353	biosapiens	biosapiens,SOFA	sequence	6	SO	polypeptide_region	polypeptide_zinc_ion_contact_site
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001103	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with zinc ions." [EBIBS:GAR, SO:cb]	5741162	biosapiens,SOFA	SOFA	sequence	7	SO	polypeptide	polypeptide_zinc_ion_contact_site
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001103	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with zinc ions." [EBIBS:GAR, SO:cb]	5741163	biosapiens,SOFA	SOFA	sequence	7	SO	biological_region	polypeptide_zinc_ion_contact_site
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001103	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with zinc ions." [EBIBS:GAR, SO:cb]	6311028	SOFA	SOFA	sequence	8	SO	biological_region	polypeptide_zinc_ion_contact_site
SO:0001104	\N	biosapiens	"Amino acid involved in the activity of an enzyme." [EBIBS:GAR, UniProt:curation_manual]	SO:0001104	"Amino acid involved in the activity of an enzyme." [EBIBS:GAR, UniProt:curation_manual]	45981	\N	biosapiens	sequence	0	SO	catalytic_residue	catalytic_residue
SO:0001237	SO:0001104	biosapiens	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001104	"Amino acid involved in the activity of an enzyme." [EBIBS:GAR, UniProt:curation_manual]	490693	biosapiens	\N	sequence	1	SO	amino_acid	catalytic_residue
SO:0100019	SO:0001104	biosapiens	"A polypeptide catalytic motif is a short (up to 20 amino acids) polypeptide region that contains one or more active site residues." [EBIBS:GAR]	SO:0001104	"Amino acid involved in the activity of an enzyme." [EBIBS:GAR, UniProt:curation_manual]	490694	biosapiens	biosapiens	sequence	1	SO	polypeptide_catalytic_motif	catalytic_residue
SO:0000104	SO:0001237	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001104	"Amino acid involved in the activity of an enzyme." [EBIBS:GAR, UniProt:curation_manual]	1073241	\N	SOFA	sequence	2	SO	polypeptide	catalytic_residue
SO:0001411	SO:0001237	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001104	"Amino acid involved in the activity of an enzyme." [EBIBS:GAR, UniProt:curation_manual]	1073242	\N	SOFA	sequence	2	SO	biological_region	catalytic_residue
SO:0100001	SO:0100019	biosapiens	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001104	"Amino acid involved in the activity of an enzyme." [EBIBS:GAR, UniProt:curation_manual]	1073243	biosapiens	biosapiens	sequence	2	SO	biochemical_region_of_peptide	catalytic_residue
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001104	"Amino acid involved in the activity of an enzyme." [EBIBS:GAR, UniProt:curation_manual]	5741164	SOFA	SOFA	sequence	7	SO	biological_region	catalytic_residue
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001104	"Amino acid involved in the activity of an enzyme." [EBIBS:GAR, UniProt:curation_manual]	5817333	SOFA	SOFA	sequence	8	SO	region	catalytic_residue
SO:0001067	SO:0100001	biosapiens	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001104	"Amino acid involved in the activity of an enzyme." [EBIBS:GAR, UniProt:curation_manual]	1904302	biosapiens	biosapiens	sequence	3	SO	polypeptide_motif	catalytic_residue
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001104	"Amino acid involved in the activity of an enzyme." [EBIBS:GAR, UniProt:curation_manual]	6378765	SOFA	SOFA	sequence	9	SO	sequence_feature	catalytic_residue
SO:0100021	SO:0001067	biosapiens	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001104	"Amino acid involved in the activity of an enzyme." [EBIBS:GAR, UniProt:curation_manual]	2928731	biosapiens	biosapiens	sequence	4	SO	polypeptide_conserved_region	catalytic_residue
SO:0000839	SO:0100021	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001104	"Amino acid involved in the activity of an enzyme." [EBIBS:GAR, UniProt:curation_manual]	4001955	biosapiens	biosapiens,SOFA	sequence	5	SO	polypeptide_region	catalytic_residue
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001104	"Amino acid involved in the activity of an enzyme." [EBIBS:GAR, UniProt:curation_manual]	4966354	biosapiens,SOFA	SOFA	sequence	6	SO	polypeptide	catalytic_residue
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001104	"Amino acid involved in the activity of an enzyme." [EBIBS:GAR, UniProt:curation_manual]	4966355	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	catalytic_residue
SO:0001105	\N	biosapiens	"Residues which interact with a ligand." [EBIBS:GAR]	SO:0001105	"Residues which interact with a ligand." [EBIBS:GAR]	45982	\N	biosapiens	sequence	0	SO	polypeptide_ligand_contact	polypeptide_ligand_contact
SO:0001657	SO:0001105	biosapiens	"A binding site that, in the molecule, interacts selectively and non-covalently with a small molecule such as a drug, or hormone." [SO:ke]	SO:0001105	"Residues which interact with a ligand." [EBIBS:GAR]	490695	biosapiens	\N	sequence	1	SO	ligand_binding_site	polypeptide_ligand_contact
SO:0100002	SO:0001105	biosapiens	"A region that is involved a contact with another molecule." [EBIBS:GAR]	SO:0001105	"Residues which interact with a ligand." [EBIBS:GAR]	490696	biosapiens	biosapiens	sequence	1	SO	molecular_contact_region	polypeptide_ligand_contact
SO:0000409	SO:0001657	biosapiens	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0001105	"Residues which interact with a ligand." [EBIBS:GAR]	1073244	\N	biosapiens,SOFA	sequence	2	SO	binding_site	polypeptide_ligand_contact
SO:0100001	SO:0100002	biosapiens	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001105	"Residues which interact with a ligand." [EBIBS:GAR]	1073245	biosapiens	biosapiens	sequence	2	SO	biochemical_region_of_peptide	polypeptide_ligand_contact
SO:0001411	SO:0000409	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001105	"Residues which interact with a ligand." [EBIBS:GAR]	1904303	biosapiens,SOFA	SOFA	sequence	3	SO	biological_region	polypeptide_ligand_contact
SO:0001067	SO:0100001	biosapiens	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001105	"Residues which interact with a ligand." [EBIBS:GAR]	1904304	biosapiens	biosapiens	sequence	3	SO	polypeptide_motif	polypeptide_ligand_contact
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001105	"Residues which interact with a ligand." [EBIBS:GAR]	6311030	SOFA	SOFA	sequence	8	SO	region	polypeptide_ligand_contact
SO:0100021	SO:0001067	biosapiens	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001105	"Residues which interact with a ligand." [EBIBS:GAR]	2928733	biosapiens	biosapiens	sequence	4	SO	polypeptide_conserved_region	polypeptide_ligand_contact
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001105	"Residues which interact with a ligand." [EBIBS:GAR]	6409704	SOFA	SOFA	sequence	9	SO	sequence_feature	polypeptide_ligand_contact
SO:0000839	SO:0100021	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001105	"Residues which interact with a ligand." [EBIBS:GAR]	4001957	biosapiens	biosapiens,SOFA	sequence	5	SO	polypeptide_region	polypeptide_ligand_contact
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001105	"Residues which interact with a ligand." [EBIBS:GAR]	4966356	biosapiens,SOFA	SOFA	sequence	6	SO	polypeptide	polypeptide_ligand_contact
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001105	"Residues which interact with a ligand." [EBIBS:GAR]	4966357	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	polypeptide_ligand_contact
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001105	"Residues which interact with a ligand." [EBIBS:GAR]	5741166	SOFA	SOFA	sequence	7	SO	biological_region	polypeptide_ligand_contact
SO:0001106	\N	biosapiens	"A motif of five consecutive residues and two H-bonds in which: Residue(i) is Aspartate or Asparagine (Asx), side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2) or (i+3), main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+3) or (i+4)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001106	"A motif of five consecutive residues and two H-bonds in which: Residue(i) is Aspartate or Asparagine (Asx), side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2) or (i+3), main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+3) or (i+4)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	45983	\N	biosapiens	sequence	0	SO	asx_motif	asx_motif
SO:0001078	SO:0001106	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001106	"A motif of five consecutive residues and two H-bonds in which: Residue(i) is Aspartate or Asparagine (Asx), side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2) or (i+3), main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+3) or (i+4)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	490697	biosapiens	biosapiens	sequence	1	SO	polypeptide_secondary_structure	asx_motif
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001106	"A motif of five consecutive residues and two H-bonds in which: Residue(i) is Aspartate or Asparagine (Asx), side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2) or (i+3), main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+3) or (i+4)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1073246	biosapiens	biosapiens	sequence	2	SO	polypeptide_structural_region	asx_motif
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001106	"A motif of five consecutive residues and two H-bonds in which: Residue(i) is Aspartate or Asparagine (Asx), side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2) or (i+3), main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+3) or (i+4)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1904305	biosapiens	biosapiens,SOFA	sequence	3	SO	polypeptide_region	asx_motif
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001106	"A motif of five consecutive residues and two H-bonds in which: Residue(i) is Aspartate or Asparagine (Asx), side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2) or (i+3), main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+3) or (i+4)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928734	biosapiens,SOFA	SOFA	sequence	4	SO	polypeptide	asx_motif
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001106	"A motif of five consecutive residues and two H-bonds in which: Residue(i) is Aspartate or Asparagine (Asx), side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2) or (i+3), main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+3) or (i+4)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928735	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	asx_motif
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001106	"A motif of five consecutive residues and two H-bonds in which: Residue(i) is Aspartate or Asparagine (Asx), side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2) or (i+3), main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+3) or (i+4)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4001958	SOFA	SOFA	sequence	5	SO	biological_region	asx_motif
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001106	"A motif of five consecutive residues and two H-bonds in which: Residue(i) is Aspartate or Asparagine (Asx), side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2) or (i+3), main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+3) or (i+4)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966358	SOFA	SOFA	sequence	6	SO	region	asx_motif
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001106	"A motif of five consecutive residues and two H-bonds in which: Residue(i) is Aspartate or Asparagine (Asx), side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2) or (i+3), main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+3) or (i+4)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5407444	SOFA	SOFA	sequence	7	SO	sequence_feature	asx_motif
SO:0001107	\N	biosapiens	"A motif of three residues within a beta-sheet in which the main chains of two consecutive residues are H-bonded to that of the third, and in which the dihedral angles are as follows: Residue(i): -140 degrees < phi(l) -20 degrees , -90 degrees < psi(l) < 40 degrees. Residue (i+1): -180 degrees < phi < -25 degrees or +120 degrees < phi < +180 degrees, +40 degrees < psi < +180 degrees or -180 degrees < psi < -120 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001107	"A motif of three residues within a beta-sheet in which the main chains of two consecutive residues are H-bonded to that of the third, and in which the dihedral angles are as follows: Residue(i): -140 degrees < phi(l) -20 degrees , -90 degrees < psi(l) < 40 degrees. Residue (i+1): -180 degrees < phi < -25 degrees or +120 degrees < phi < +180 degrees, +40 degrees < psi < +180 degrees or -180 degrees < psi < -120 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	45984	\N	biosapiens	sequence	0	SO	beta_bulge	beta_bulge
SO:0001078	SO:0001107	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001107	"A motif of three residues within a beta-sheet in which the main chains of two consecutive residues are H-bonded to that of the third, and in which the dihedral angles are as follows: Residue(i): -140 degrees < phi(l) -20 degrees , -90 degrees < psi(l) < 40 degrees. Residue (i+1): -180 degrees < phi < -25 degrees or +120 degrees < phi < +180 degrees, +40 degrees < psi < +180 degrees or -180 degrees < psi < -120 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	490698	biosapiens	biosapiens	sequence	1	SO	polypeptide_secondary_structure	beta_bulge
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001107	"A motif of three residues within a beta-sheet in which the main chains of two consecutive residues are H-bonded to that of the third, and in which the dihedral angles are as follows: Residue(i): -140 degrees < phi(l) -20 degrees , -90 degrees < psi(l) < 40 degrees. Residue (i+1): -180 degrees < phi < -25 degrees or +120 degrees < phi < +180 degrees, +40 degrees < psi < +180 degrees or -180 degrees < psi < -120 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1073247	biosapiens	biosapiens	sequence	2	SO	polypeptide_structural_region	beta_bulge
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001107	"A motif of three residues within a beta-sheet in which the main chains of two consecutive residues are H-bonded to that of the third, and in which the dihedral angles are as follows: Residue(i): -140 degrees < phi(l) -20 degrees , -90 degrees < psi(l) < 40 degrees. Residue (i+1): -180 degrees < phi < -25 degrees or +120 degrees < phi < +180 degrees, +40 degrees < psi < +180 degrees or -180 degrees < psi < -120 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1904306	biosapiens	biosapiens,SOFA	sequence	3	SO	polypeptide_region	beta_bulge
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001107	"A motif of three residues within a beta-sheet in which the main chains of two consecutive residues are H-bonded to that of the third, and in which the dihedral angles are as follows: Residue(i): -140 degrees < phi(l) -20 degrees , -90 degrees < psi(l) < 40 degrees. Residue (i+1): -180 degrees < phi < -25 degrees or +120 degrees < phi < +180 degrees, +40 degrees < psi < +180 degrees or -180 degrees < psi < -120 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928736	biosapiens,SOFA	SOFA	sequence	4	SO	polypeptide	beta_bulge
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001107	"A motif of three residues within a beta-sheet in which the main chains of two consecutive residues are H-bonded to that of the third, and in which the dihedral angles are as follows: Residue(i): -140 degrees < phi(l) -20 degrees , -90 degrees < psi(l) < 40 degrees. Residue (i+1): -180 degrees < phi < -25 degrees or +120 degrees < phi < +180 degrees, +40 degrees < psi < +180 degrees or -180 degrees < psi < -120 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928737	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	beta_bulge
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001107	"A motif of three residues within a beta-sheet in which the main chains of two consecutive residues are H-bonded to that of the third, and in which the dihedral angles are as follows: Residue(i): -140 degrees < phi(l) -20 degrees , -90 degrees < psi(l) < 40 degrees. Residue (i+1): -180 degrees < phi < -25 degrees or +120 degrees < phi < +180 degrees, +40 degrees < psi < +180 degrees or -180 degrees < psi < -120 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4001960	SOFA	SOFA	sequence	5	SO	biological_region	beta_bulge
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001107	"A motif of three residues within a beta-sheet in which the main chains of two consecutive residues are H-bonded to that of the third, and in which the dihedral angles are as follows: Residue(i): -140 degrees < phi(l) -20 degrees , -90 degrees < psi(l) < 40 degrees. Residue (i+1): -180 degrees < phi < -25 degrees or +120 degrees < phi < +180 degrees, +40 degrees < psi < +180 degrees or -180 degrees < psi < -120 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966360	SOFA	SOFA	sequence	6	SO	region	beta_bulge
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001107	"A motif of three residues within a beta-sheet in which the main chains of two consecutive residues are H-bonded to that of the third, and in which the dihedral angles are as follows: Residue(i): -140 degrees < phi(l) -20 degrees , -90 degrees < psi(l) < 40 degrees. Residue (i+1): -180 degrees < phi < -25 degrees or +120 degrees < phi < +180 degrees, +40 degrees < psi < +180 degrees or -180 degrees < psi < -120 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5407445	SOFA	SOFA	sequence	7	SO	sequence_feature	beta_bulge
SO:0001108	\N	biosapiens	"A motif of three residues within a beta-sheet consisting of two H-bonds. Beta bulge loops often occur at the loop ends of beta-hairpins." [EBIBS:GAR, Http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001108	"A motif of three residues within a beta-sheet consisting of two H-bonds. Beta bulge loops often occur at the loop ends of beta-hairpins." [EBIBS:GAR, Http://www.ebi.ac.uk/msd-srv/msdmotif/]	45985	\N	biosapiens	sequence	0	SO	beta_bulge_loop	beta_bulge_loop
SO:0001078	SO:0001108	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001108	"A motif of three residues within a beta-sheet consisting of two H-bonds. Beta bulge loops often occur at the loop ends of beta-hairpins." [EBIBS:GAR, Http://www.ebi.ac.uk/msd-srv/msdmotif/]	490699	biosapiens	biosapiens	sequence	1	SO	polypeptide_secondary_structure	beta_bulge_loop
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001108	"A motif of three residues within a beta-sheet consisting of two H-bonds. Beta bulge loops often occur at the loop ends of beta-hairpins." [EBIBS:GAR, Http://www.ebi.ac.uk/msd-srv/msdmotif/]	1073248	biosapiens	biosapiens	sequence	2	SO	polypeptide_structural_region	beta_bulge_loop
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001108	"A motif of three residues within a beta-sheet consisting of two H-bonds. Beta bulge loops often occur at the loop ends of beta-hairpins." [EBIBS:GAR, Http://www.ebi.ac.uk/msd-srv/msdmotif/]	1904307	biosapiens	biosapiens,SOFA	sequence	3	SO	polypeptide_region	beta_bulge_loop
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001108	"A motif of three residues within a beta-sheet consisting of two H-bonds. Beta bulge loops often occur at the loop ends of beta-hairpins." [EBIBS:GAR, Http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928738	biosapiens,SOFA	SOFA	sequence	4	SO	polypeptide	beta_bulge_loop
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001108	"A motif of three residues within a beta-sheet consisting of two H-bonds. Beta bulge loops often occur at the loop ends of beta-hairpins." [EBIBS:GAR, Http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928739	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	beta_bulge_loop
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001108	"A motif of three residues within a beta-sheet consisting of two H-bonds. Beta bulge loops often occur at the loop ends of beta-hairpins." [EBIBS:GAR, Http://www.ebi.ac.uk/msd-srv/msdmotif/]	4001962	SOFA	SOFA	sequence	5	SO	biological_region	beta_bulge_loop
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001108	"A motif of three residues within a beta-sheet consisting of two H-bonds. Beta bulge loops often occur at the loop ends of beta-hairpins." [EBIBS:GAR, Http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966362	SOFA	SOFA	sequence	6	SO	region	beta_bulge_loop
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001108	"A motif of three residues within a beta-sheet consisting of two H-bonds. Beta bulge loops often occur at the loop ends of beta-hairpins." [EBIBS:GAR, Http://www.ebi.ac.uk/msd-srv/msdmotif/]	5407446	SOFA	SOFA	sequence	7	SO	sequence_feature	beta_bulge_loop
SO:0001109	\N	biosapiens	"A motif of three residues within a beta-sheet consisting of two H-bonds in which: the main-chain NH of residue(i) is H-bonded to the main-chain CO of residue(i+4), the main-chain CO of residue i is H-bonded to the main-chain NH of residue(i+3), these loops have an RL nest at residues i+2 and i+3." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001109	"A motif of three residues within a beta-sheet consisting of two H-bonds in which: the main-chain NH of residue(i) is H-bonded to the main-chain CO of residue(i+4), the main-chain CO of residue i is H-bonded to the main-chain NH of residue(i+3), these loops have an RL nest at residues i+2 and i+3." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	45986	\N	biosapiens	sequence	0	SO	beta_bulge_loop_five	beta_bulge_loop_five
SO:0001108	SO:0001109	biosapiens	"A motif of three residues within a beta-sheet consisting of two H-bonds. Beta bulge loops often occur at the loop ends of beta-hairpins." [EBIBS:GAR, Http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001109	"A motif of three residues within a beta-sheet consisting of two H-bonds in which: the main-chain NH of residue(i) is H-bonded to the main-chain CO of residue(i+4), the main-chain CO of residue i is H-bonded to the main-chain NH of residue(i+3), these loops have an RL nest at residues i+2 and i+3." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	490700	biosapiens	biosapiens	sequence	1	SO	beta_bulge_loop	beta_bulge_loop_five
SO:0001078	SO:0001108	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001109	"A motif of three residues within a beta-sheet consisting of two H-bonds in which: the main-chain NH of residue(i) is H-bonded to the main-chain CO of residue(i+4), the main-chain CO of residue i is H-bonded to the main-chain NH of residue(i+3), these loops have an RL nest at residues i+2 and i+3." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1073249	biosapiens	biosapiens	sequence	2	SO	polypeptide_secondary_structure	beta_bulge_loop_five
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001109	"A motif of three residues within a beta-sheet consisting of two H-bonds in which: the main-chain NH of residue(i) is H-bonded to the main-chain CO of residue(i+4), the main-chain CO of residue i is H-bonded to the main-chain NH of residue(i+3), these loops have an RL nest at residues i+2 and i+3." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1904308	biosapiens	biosapiens	sequence	3	SO	polypeptide_structural_region	beta_bulge_loop_five
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001109	"A motif of three residues within a beta-sheet consisting of two H-bonds in which: the main-chain NH of residue(i) is H-bonded to the main-chain CO of residue(i+4), the main-chain CO of residue i is H-bonded to the main-chain NH of residue(i+3), these loops have an RL nest at residues i+2 and i+3." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928740	biosapiens	biosapiens,SOFA	sequence	4	SO	polypeptide_region	beta_bulge_loop_five
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001109	"A motif of three residues within a beta-sheet consisting of two H-bonds in which: the main-chain NH of residue(i) is H-bonded to the main-chain CO of residue(i+4), the main-chain CO of residue i is H-bonded to the main-chain NH of residue(i+3), these loops have an RL nest at residues i+2 and i+3." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4001964	biosapiens,SOFA	SOFA	sequence	5	SO	polypeptide	beta_bulge_loop_five
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001109	"A motif of three residues within a beta-sheet consisting of two H-bonds in which: the main-chain NH of residue(i) is H-bonded to the main-chain CO of residue(i+4), the main-chain CO of residue i is H-bonded to the main-chain NH of residue(i+3), these loops have an RL nest at residues i+2 and i+3." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4001965	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	beta_bulge_loop_five
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001109	"A motif of three residues within a beta-sheet consisting of two H-bonds in which: the main-chain NH of residue(i) is H-bonded to the main-chain CO of residue(i+4), the main-chain CO of residue i is H-bonded to the main-chain NH of residue(i+3), these loops have an RL nest at residues i+2 and i+3." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966364	SOFA	SOFA	sequence	6	SO	biological_region	beta_bulge_loop_five
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001109	"A motif of three residues within a beta-sheet consisting of two H-bonds in which: the main-chain NH of residue(i) is H-bonded to the main-chain CO of residue(i+4), the main-chain CO of residue i is H-bonded to the main-chain NH of residue(i+3), these loops have an RL nest at residues i+2 and i+3." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5741168	SOFA	SOFA	sequence	7	SO	region	beta_bulge_loop_five
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001109	"A motif of three residues within a beta-sheet consisting of two H-bonds in which: the main-chain NH of residue(i) is H-bonded to the main-chain CO of residue(i+4), the main-chain CO of residue i is H-bonded to the main-chain NH of residue(i+3), these loops have an RL nest at residues i+2 and i+3." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6146652	SOFA	SOFA	sequence	8	SO	sequence_feature	beta_bulge_loop_five
SO:0001110	\N	biosapiens	"A motif of three residues within a beta-sheet consisting of two H-bonds in which: the main-chain NH of residue(i) is H-bonded to the main-chain CO of residue(i+5), the main-chain CO of residue i is H-bonded to the main-chain NH of residue(i+4), these loops have an RL nest at residues i+3 and i+4." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001110	"A motif of three residues within a beta-sheet consisting of two H-bonds in which: the main-chain NH of residue(i) is H-bonded to the main-chain CO of residue(i+5), the main-chain CO of residue i is H-bonded to the main-chain NH of residue(i+4), these loops have an RL nest at residues i+3 and i+4." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	45987	\N	biosapiens	sequence	0	SO	beta_bulge_loop_six	beta_bulge_loop_six
SO:0001108	SO:0001110	biosapiens	"A motif of three residues within a beta-sheet consisting of two H-bonds. Beta bulge loops often occur at the loop ends of beta-hairpins." [EBIBS:GAR, Http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001110	"A motif of three residues within a beta-sheet consisting of two H-bonds in which: the main-chain NH of residue(i) is H-bonded to the main-chain CO of residue(i+5), the main-chain CO of residue i is H-bonded to the main-chain NH of residue(i+4), these loops have an RL nest at residues i+3 and i+4." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	490701	biosapiens	biosapiens	sequence	1	SO	beta_bulge_loop	beta_bulge_loop_six
SO:0001078	SO:0001108	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001110	"A motif of three residues within a beta-sheet consisting of two H-bonds in which: the main-chain NH of residue(i) is H-bonded to the main-chain CO of residue(i+5), the main-chain CO of residue i is H-bonded to the main-chain NH of residue(i+4), these loops have an RL nest at residues i+3 and i+4." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1073250	biosapiens	biosapiens	sequence	2	SO	polypeptide_secondary_structure	beta_bulge_loop_six
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001110	"A motif of three residues within a beta-sheet consisting of two H-bonds in which: the main-chain NH of residue(i) is H-bonded to the main-chain CO of residue(i+5), the main-chain CO of residue i is H-bonded to the main-chain NH of residue(i+4), these loops have an RL nest at residues i+3 and i+4." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1904309	biosapiens	biosapiens	sequence	3	SO	polypeptide_structural_region	beta_bulge_loop_six
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001110	"A motif of three residues within a beta-sheet consisting of two H-bonds in which: the main-chain NH of residue(i) is H-bonded to the main-chain CO of residue(i+5), the main-chain CO of residue i is H-bonded to the main-chain NH of residue(i+4), these loops have an RL nest at residues i+3 and i+4." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928741	biosapiens	biosapiens,SOFA	sequence	4	SO	polypeptide_region	beta_bulge_loop_six
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001110	"A motif of three residues within a beta-sheet consisting of two H-bonds in which: the main-chain NH of residue(i) is H-bonded to the main-chain CO of residue(i+5), the main-chain CO of residue i is H-bonded to the main-chain NH of residue(i+4), these loops have an RL nest at residues i+3 and i+4." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4001966	biosapiens,SOFA	SOFA	sequence	5	SO	polypeptide	beta_bulge_loop_six
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001110	"A motif of three residues within a beta-sheet consisting of two H-bonds in which: the main-chain NH of residue(i) is H-bonded to the main-chain CO of residue(i+5), the main-chain CO of residue i is H-bonded to the main-chain NH of residue(i+4), these loops have an RL nest at residues i+3 and i+4." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4001967	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	beta_bulge_loop_six
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001110	"A motif of three residues within a beta-sheet consisting of two H-bonds in which: the main-chain NH of residue(i) is H-bonded to the main-chain CO of residue(i+5), the main-chain CO of residue i is H-bonded to the main-chain NH of residue(i+4), these loops have an RL nest at residues i+3 and i+4." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966366	SOFA	SOFA	sequence	6	SO	biological_region	beta_bulge_loop_six
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001110	"A motif of three residues within a beta-sheet consisting of two H-bonds in which: the main-chain NH of residue(i) is H-bonded to the main-chain CO of residue(i+5), the main-chain CO of residue i is H-bonded to the main-chain NH of residue(i+4), these loops have an RL nest at residues i+3 and i+4." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5741170	SOFA	SOFA	sequence	7	SO	region	beta_bulge_loop_six
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001110	"A motif of three residues within a beta-sheet consisting of two H-bonds in which: the main-chain NH of residue(i) is H-bonded to the main-chain CO of residue(i+5), the main-chain CO of residue i is H-bonded to the main-chain NH of residue(i+4), these loops have an RL nest at residues i+3 and i+4." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6146653	SOFA	SOFA	sequence	8	SO	sequence_feature	beta_bulge_loop_six
SO:0001111	\N	biosapiens	"A beta strand describes a single length of polypeptide chain that forms part of a beta sheet. A single continuous stretch of amino acids adopting an extended conformation of hydrogen bonds between the N-O and the C=O of another part of the peptide. This forms a secondary protein structure in which two or more extended polypeptide regions are hydrogen-bonded to one another in a planar array." [EBIBS:GAR, UniProt:curation_manual]	SO:0001111	"A beta strand describes a single length of polypeptide chain that forms part of a beta sheet. A single continuous stretch of amino acids adopting an extended conformation of hydrogen bonds between the N-O and the C=O of another part of the peptide. This forms a secondary protein structure in which two or more extended polypeptide regions are hydrogen-bonded to one another in a planar array." [EBIBS:GAR, UniProt:curation_manual]	45988	\N	biosapiens	sequence	0	SO	beta_strand	beta_strand
SO:0001078	SO:0001111	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001111	"A beta strand describes a single length of polypeptide chain that forms part of a beta sheet. A single continuous stretch of amino acids adopting an extended conformation of hydrogen bonds between the N-O and the C=O of another part of the peptide. This forms a secondary protein structure in which two or more extended polypeptide regions are hydrogen-bonded to one another in a planar array." [EBIBS:GAR, UniProt:curation_manual]	490702	biosapiens	biosapiens	sequence	1	SO	polypeptide_secondary_structure	beta_strand
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001111	"A beta strand describes a single length of polypeptide chain that forms part of a beta sheet. A single continuous stretch of amino acids adopting an extended conformation of hydrogen bonds between the N-O and the C=O of another part of the peptide. This forms a secondary protein structure in which two or more extended polypeptide regions are hydrogen-bonded to one another in a planar array." [EBIBS:GAR, UniProt:curation_manual]	1073251	biosapiens	biosapiens	sequence	2	SO	polypeptide_structural_region	beta_strand
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001111	"A beta strand describes a single length of polypeptide chain that forms part of a beta sheet. A single continuous stretch of amino acids adopting an extended conformation of hydrogen bonds between the N-O and the C=O of another part of the peptide. This forms a secondary protein structure in which two or more extended polypeptide regions are hydrogen-bonded to one another in a planar array." [EBIBS:GAR, UniProt:curation_manual]	1904310	biosapiens	biosapiens,SOFA	sequence	3	SO	polypeptide_region	beta_strand
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001111	"A beta strand describes a single length of polypeptide chain that forms part of a beta sheet. A single continuous stretch of amino acids adopting an extended conformation of hydrogen bonds between the N-O and the C=O of another part of the peptide. This forms a secondary protein structure in which two or more extended polypeptide regions are hydrogen-bonded to one another in a planar array." [EBIBS:GAR, UniProt:curation_manual]	2928742	biosapiens,SOFA	SOFA	sequence	4	SO	polypeptide	beta_strand
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001111	"A beta strand describes a single length of polypeptide chain that forms part of a beta sheet. A single continuous stretch of amino acids adopting an extended conformation of hydrogen bonds between the N-O and the C=O of another part of the peptide. This forms a secondary protein structure in which two or more extended polypeptide regions are hydrogen-bonded to one another in a planar array." [EBIBS:GAR, UniProt:curation_manual]	2928743	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	beta_strand
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001111	"A beta strand describes a single length of polypeptide chain that forms part of a beta sheet. A single continuous stretch of amino acids adopting an extended conformation of hydrogen bonds between the N-O and the C=O of another part of the peptide. This forms a secondary protein structure in which two or more extended polypeptide regions are hydrogen-bonded to one another in a planar array." [EBIBS:GAR, UniProt:curation_manual]	4001968	SOFA	SOFA	sequence	5	SO	biological_region	beta_strand
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001111	"A beta strand describes a single length of polypeptide chain that forms part of a beta sheet. A single continuous stretch of amino acids adopting an extended conformation of hydrogen bonds between the N-O and the C=O of another part of the peptide. This forms a secondary protein structure in which two or more extended polypeptide regions are hydrogen-bonded to one another in a planar array." [EBIBS:GAR, UniProt:curation_manual]	4966368	SOFA	SOFA	sequence	6	SO	region	beta_strand
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001111	"A beta strand describes a single length of polypeptide chain that forms part of a beta sheet. A single continuous stretch of amino acids adopting an extended conformation of hydrogen bonds between the N-O and the C=O of another part of the peptide. This forms a secondary protein structure in which two or more extended polypeptide regions are hydrogen-bonded to one another in a planar array." [EBIBS:GAR, UniProt:curation_manual]	5407447	SOFA	SOFA	sequence	7	SO	sequence_feature	beta_strand
SO:0001112	\N	biosapiens	"A peptide region which hydrogen bonded to another region of peptide running in the oposite direction (one running N-terminal to C-terminal and one running C-terminal to N-terminal). Hydrogen bonding occurs between every other C=O from one strand to every other N-H on the adjacent strand. In this case, if two atoms C-alpha (i) and C-alpha (j) are adjacent in two hydrogen-bonded beta strands, then they form two mutual backbone hydrogen bonds to each other's flanking peptide groups; this is known as a close pair of hydrogen bonds. The peptide backbone dihedral angles (phi, psi) are about (-140 degrees, 135 degrees) in antiparallel sheets." [EBIBS:GAR, UniProt:curation_manual]	SO:0001112	"A peptide region which hydrogen bonded to another region of peptide running in the oposite direction (one running N-terminal to C-terminal and one running C-terminal to N-terminal). Hydrogen bonding occurs between every other C=O from one strand to every other N-H on the adjacent strand. In this case, if two atoms C-alpha (i) and C-alpha (j) are adjacent in two hydrogen-bonded beta strands, then they form two mutual backbone hydrogen bonds to each other's flanking peptide groups; this is known as a close pair of hydrogen bonds. The peptide backbone dihedral angles (phi, psi) are about (-140 degrees, 135 degrees) in antiparallel sheets." [EBIBS:GAR, UniProt:curation_manual]	45989	\N	biosapiens	sequence	0	SO	antiparallel_beta_strand	antiparallel_beta_strand
SO:0001111	SO:0001112	biosapiens	"A beta strand describes a single length of polypeptide chain that forms part of a beta sheet. A single continuous stretch of amino acids adopting an extended conformation of hydrogen bonds between the N-O and the C=O of another part of the peptide. This forms a secondary protein structure in which two or more extended polypeptide regions are hydrogen-bonded to one another in a planar array." [EBIBS:GAR, UniProt:curation_manual]	SO:0001112	"A peptide region which hydrogen bonded to another region of peptide running in the oposite direction (one running N-terminal to C-terminal and one running C-terminal to N-terminal). Hydrogen bonding occurs between every other C=O from one strand to every other N-H on the adjacent strand. In this case, if two atoms C-alpha (i) and C-alpha (j) are adjacent in two hydrogen-bonded beta strands, then they form two mutual backbone hydrogen bonds to each other's flanking peptide groups; this is known as a close pair of hydrogen bonds. The peptide backbone dihedral angles (phi, psi) are about (-140 degrees, 135 degrees) in antiparallel sheets." [EBIBS:GAR, UniProt:curation_manual]	490703	biosapiens	biosapiens	sequence	1	SO	beta_strand	antiparallel_beta_strand
SO:0001078	SO:0001111	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001112	"A peptide region which hydrogen bonded to another region of peptide running in the oposite direction (one running N-terminal to C-terminal and one running C-terminal to N-terminal). Hydrogen bonding occurs between every other C=O from one strand to every other N-H on the adjacent strand. In this case, if two atoms C-alpha (i) and C-alpha (j) are adjacent in two hydrogen-bonded beta strands, then they form two mutual backbone hydrogen bonds to each other's flanking peptide groups; this is known as a close pair of hydrogen bonds. The peptide backbone dihedral angles (phi, psi) are about (-140 degrees, 135 degrees) in antiparallel sheets." [EBIBS:GAR, UniProt:curation_manual]	1073252	biosapiens	biosapiens	sequence	2	SO	polypeptide_secondary_structure	antiparallel_beta_strand
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001112	"A peptide region which hydrogen bonded to another region of peptide running in the oposite direction (one running N-terminal to C-terminal and one running C-terminal to N-terminal). Hydrogen bonding occurs between every other C=O from one strand to every other N-H on the adjacent strand. In this case, if two atoms C-alpha (i) and C-alpha (j) are adjacent in two hydrogen-bonded beta strands, then they form two mutual backbone hydrogen bonds to each other's flanking peptide groups; this is known as a close pair of hydrogen bonds. The peptide backbone dihedral angles (phi, psi) are about (-140 degrees, 135 degrees) in antiparallel sheets." [EBIBS:GAR, UniProt:curation_manual]	1904311	biosapiens	biosapiens	sequence	3	SO	polypeptide_structural_region	antiparallel_beta_strand
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001112	"A peptide region which hydrogen bonded to another region of peptide running in the oposite direction (one running N-terminal to C-terminal and one running C-terminal to N-terminal). Hydrogen bonding occurs between every other C=O from one strand to every other N-H on the adjacent strand. In this case, if two atoms C-alpha (i) and C-alpha (j) are adjacent in two hydrogen-bonded beta strands, then they form two mutual backbone hydrogen bonds to each other's flanking peptide groups; this is known as a close pair of hydrogen bonds. The peptide backbone dihedral angles (phi, psi) are about (-140 degrees, 135 degrees) in antiparallel sheets." [EBIBS:GAR, UniProt:curation_manual]	2928744	biosapiens	biosapiens,SOFA	sequence	4	SO	polypeptide_region	antiparallel_beta_strand
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001112	"A peptide region which hydrogen bonded to another region of peptide running in the oposite direction (one running N-terminal to C-terminal and one running C-terminal to N-terminal). Hydrogen bonding occurs between every other C=O from one strand to every other N-H on the adjacent strand. In this case, if two atoms C-alpha (i) and C-alpha (j) are adjacent in two hydrogen-bonded beta strands, then they form two mutual backbone hydrogen bonds to each other's flanking peptide groups; this is known as a close pair of hydrogen bonds. The peptide backbone dihedral angles (phi, psi) are about (-140 degrees, 135 degrees) in antiparallel sheets." [EBIBS:GAR, UniProt:curation_manual]	4001970	biosapiens,SOFA	SOFA	sequence	5	SO	polypeptide	antiparallel_beta_strand
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001112	"A peptide region which hydrogen bonded to another region of peptide running in the oposite direction (one running N-terminal to C-terminal and one running C-terminal to N-terminal). Hydrogen bonding occurs between every other C=O from one strand to every other N-H on the adjacent strand. In this case, if two atoms C-alpha (i) and C-alpha (j) are adjacent in two hydrogen-bonded beta strands, then they form two mutual backbone hydrogen bonds to each other's flanking peptide groups; this is known as a close pair of hydrogen bonds. The peptide backbone dihedral angles (phi, psi) are about (-140 degrees, 135 degrees) in antiparallel sheets." [EBIBS:GAR, UniProt:curation_manual]	4001971	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	antiparallel_beta_strand
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001112	"A peptide region which hydrogen bonded to another region of peptide running in the oposite direction (one running N-terminal to C-terminal and one running C-terminal to N-terminal). Hydrogen bonding occurs between every other C=O from one strand to every other N-H on the adjacent strand. In this case, if two atoms C-alpha (i) and C-alpha (j) are adjacent in two hydrogen-bonded beta strands, then they form two mutual backbone hydrogen bonds to each other's flanking peptide groups; this is known as a close pair of hydrogen bonds. The peptide backbone dihedral angles (phi, psi) are about (-140 degrees, 135 degrees) in antiparallel sheets." [EBIBS:GAR, UniProt:curation_manual]	4966370	SOFA	SOFA	sequence	6	SO	biological_region	antiparallel_beta_strand
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001112	"A peptide region which hydrogen bonded to another region of peptide running in the oposite direction (one running N-terminal to C-terminal and one running C-terminal to N-terminal). Hydrogen bonding occurs between every other C=O from one strand to every other N-H on the adjacent strand. In this case, if two atoms C-alpha (i) and C-alpha (j) are adjacent in two hydrogen-bonded beta strands, then they form two mutual backbone hydrogen bonds to each other's flanking peptide groups; this is known as a close pair of hydrogen bonds. The peptide backbone dihedral angles (phi, psi) are about (-140 degrees, 135 degrees) in antiparallel sheets." [EBIBS:GAR, UniProt:curation_manual]	5741172	SOFA	SOFA	sequence	7	SO	region	antiparallel_beta_strand
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001112	"A peptide region which hydrogen bonded to another region of peptide running in the oposite direction (one running N-terminal to C-terminal and one running C-terminal to N-terminal). Hydrogen bonding occurs between every other C=O from one strand to every other N-H on the adjacent strand. In this case, if two atoms C-alpha (i) and C-alpha (j) are adjacent in two hydrogen-bonded beta strands, then they form two mutual backbone hydrogen bonds to each other's flanking peptide groups; this is known as a close pair of hydrogen bonds. The peptide backbone dihedral angles (phi, psi) are about (-140 degrees, 135 degrees) in antiparallel sheets." [EBIBS:GAR, UniProt:curation_manual]	6146654	SOFA	SOFA	sequence	8	SO	sequence_feature	antiparallel_beta_strand
SO:0001113	\N	biosapiens	"A peptide region which hydrogen bonded to another region of peptide running in the oposite direction (both running N-terminal to C-terminal). This orientation is slightly less stable because it introduces nonplanarity in the inter-strand hydrogen bonding pattern. Hydrogen bonding occurs between every other C=O from one strand to every other N-H on the adjacent strand. In this case, if two atoms C-alpha (i)and C-alpha (j) are adjacent in two hydrogen-bonded beta strands, then they do not hydrogen bond to each other; rather, one residue forms hydrogen bonds to the residues that flank the other (but not vice versa). For example, residue i may form hydrogen bonds to residues j - 1 and j + 1; this is known as a wide pair of hydrogen bonds. By contrast, residue j may hydrogen-bond to different residues altogether, or to none at all. The dihedral angles (phi, psi) are about (-120 degrees, 115 degrees) in parallel sheets." [EBIBS:GAR, UniProt:curation_manual]	SO:0001113	"A peptide region which hydrogen bonded to another region of peptide running in the oposite direction (both running N-terminal to C-terminal). This orientation is slightly less stable because it introduces nonplanarity in the inter-strand hydrogen bonding pattern. Hydrogen bonding occurs between every other C=O from one strand to every other N-H on the adjacent strand. In this case, if two atoms C-alpha (i)and C-alpha (j) are adjacent in two hydrogen-bonded beta strands, then they do not hydrogen bond to each other; rather, one residue forms hydrogen bonds to the residues that flank the other (but not vice versa). For example, residue i may form hydrogen bonds to residues j - 1 and j + 1; this is known as a wide pair of hydrogen bonds. By contrast, residue j may hydrogen-bond to different residues altogether, or to none at all. The dihedral angles (phi, psi) are about (-120 degrees, 115 degrees) in parallel sheets." [EBIBS:GAR, UniProt:curation_manual]	45990	\N	biosapiens	sequence	0	SO	parallel_beta_strand	parallel_beta_strand
SO:0001111	SO:0001113	biosapiens	"A beta strand describes a single length of polypeptide chain that forms part of a beta sheet. A single continuous stretch of amino acids adopting an extended conformation of hydrogen bonds between the N-O and the C=O of another part of the peptide. This forms a secondary protein structure in which two or more extended polypeptide regions are hydrogen-bonded to one another in a planar array." [EBIBS:GAR, UniProt:curation_manual]	SO:0001113	"A peptide region which hydrogen bonded to another region of peptide running in the oposite direction (both running N-terminal to C-terminal). This orientation is slightly less stable because it introduces nonplanarity in the inter-strand hydrogen bonding pattern. Hydrogen bonding occurs between every other C=O from one strand to every other N-H on the adjacent strand. In this case, if two atoms C-alpha (i)and C-alpha (j) are adjacent in two hydrogen-bonded beta strands, then they do not hydrogen bond to each other; rather, one residue forms hydrogen bonds to the residues that flank the other (but not vice versa). For example, residue i may form hydrogen bonds to residues j - 1 and j + 1; this is known as a wide pair of hydrogen bonds. By contrast, residue j may hydrogen-bond to different residues altogether, or to none at all. The dihedral angles (phi, psi) are about (-120 degrees, 115 degrees) in parallel sheets." [EBIBS:GAR, UniProt:curation_manual]	490704	biosapiens	biosapiens	sequence	1	SO	beta_strand	parallel_beta_strand
SO:0001078	SO:0001111	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001113	"A peptide region which hydrogen bonded to another region of peptide running in the oposite direction (both running N-terminal to C-terminal). This orientation is slightly less stable because it introduces nonplanarity in the inter-strand hydrogen bonding pattern. Hydrogen bonding occurs between every other C=O from one strand to every other N-H on the adjacent strand. In this case, if two atoms C-alpha (i)and C-alpha (j) are adjacent in two hydrogen-bonded beta strands, then they do not hydrogen bond to each other; rather, one residue forms hydrogen bonds to the residues that flank the other (but not vice versa). For example, residue i may form hydrogen bonds to residues j - 1 and j + 1; this is known as a wide pair of hydrogen bonds. By contrast, residue j may hydrogen-bond to different residues altogether, or to none at all. The dihedral angles (phi, psi) are about (-120 degrees, 115 degrees) in parallel sheets." [EBIBS:GAR, UniProt:curation_manual]	1073253	biosapiens	biosapiens	sequence	2	SO	polypeptide_secondary_structure	parallel_beta_strand
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001113	"A peptide region which hydrogen bonded to another region of peptide running in the oposite direction (both running N-terminal to C-terminal). This orientation is slightly less stable because it introduces nonplanarity in the inter-strand hydrogen bonding pattern. Hydrogen bonding occurs between every other C=O from one strand to every other N-H on the adjacent strand. In this case, if two atoms C-alpha (i)and C-alpha (j) are adjacent in two hydrogen-bonded beta strands, then they do not hydrogen bond to each other; rather, one residue forms hydrogen bonds to the residues that flank the other (but not vice versa). For example, residue i may form hydrogen bonds to residues j - 1 and j + 1; this is known as a wide pair of hydrogen bonds. By contrast, residue j may hydrogen-bond to different residues altogether, or to none at all. The dihedral angles (phi, psi) are about (-120 degrees, 115 degrees) in parallel sheets." [EBIBS:GAR, UniProt:curation_manual]	1904312	biosapiens	biosapiens	sequence	3	SO	polypeptide_structural_region	parallel_beta_strand
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001113	"A peptide region which hydrogen bonded to another region of peptide running in the oposite direction (both running N-terminal to C-terminal). This orientation is slightly less stable because it introduces nonplanarity in the inter-strand hydrogen bonding pattern. Hydrogen bonding occurs between every other C=O from one strand to every other N-H on the adjacent strand. In this case, if two atoms C-alpha (i)and C-alpha (j) are adjacent in two hydrogen-bonded beta strands, then they do not hydrogen bond to each other; rather, one residue forms hydrogen bonds to the residues that flank the other (but not vice versa). For example, residue i may form hydrogen bonds to residues j - 1 and j + 1; this is known as a wide pair of hydrogen bonds. By contrast, residue j may hydrogen-bond to different residues altogether, or to none at all. The dihedral angles (phi, psi) are about (-120 degrees, 115 degrees) in parallel sheets." [EBIBS:GAR, UniProt:curation_manual]	2928745	biosapiens	biosapiens,SOFA	sequence	4	SO	polypeptide_region	parallel_beta_strand
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001113	"A peptide region which hydrogen bonded to another region of peptide running in the oposite direction (both running N-terminal to C-terminal). This orientation is slightly less stable because it introduces nonplanarity in the inter-strand hydrogen bonding pattern. Hydrogen bonding occurs between every other C=O from one strand to every other N-H on the adjacent strand. In this case, if two atoms C-alpha (i)and C-alpha (j) are adjacent in two hydrogen-bonded beta strands, then they do not hydrogen bond to each other; rather, one residue forms hydrogen bonds to the residues that flank the other (but not vice versa). For example, residue i may form hydrogen bonds to residues j - 1 and j + 1; this is known as a wide pair of hydrogen bonds. By contrast, residue j may hydrogen-bond to different residues altogether, or to none at all. The dihedral angles (phi, psi) are about (-120 degrees, 115 degrees) in parallel sheets." [EBIBS:GAR, UniProt:curation_manual]	4001972	biosapiens,SOFA	SOFA	sequence	5	SO	polypeptide	parallel_beta_strand
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001113	"A peptide region which hydrogen bonded to another region of peptide running in the oposite direction (both running N-terminal to C-terminal). This orientation is slightly less stable because it introduces nonplanarity in the inter-strand hydrogen bonding pattern. Hydrogen bonding occurs between every other C=O from one strand to every other N-H on the adjacent strand. In this case, if two atoms C-alpha (i)and C-alpha (j) are adjacent in two hydrogen-bonded beta strands, then they do not hydrogen bond to each other; rather, one residue forms hydrogen bonds to the residues that flank the other (but not vice versa). For example, residue i may form hydrogen bonds to residues j - 1 and j + 1; this is known as a wide pair of hydrogen bonds. By contrast, residue j may hydrogen-bond to different residues altogether, or to none at all. The dihedral angles (phi, psi) are about (-120 degrees, 115 degrees) in parallel sheets." [EBIBS:GAR, UniProt:curation_manual]	4001973	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	parallel_beta_strand
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001113	"A peptide region which hydrogen bonded to another region of peptide running in the oposite direction (both running N-terminal to C-terminal). This orientation is slightly less stable because it introduces nonplanarity in the inter-strand hydrogen bonding pattern. Hydrogen bonding occurs between every other C=O from one strand to every other N-H on the adjacent strand. In this case, if two atoms C-alpha (i)and C-alpha (j) are adjacent in two hydrogen-bonded beta strands, then they do not hydrogen bond to each other; rather, one residue forms hydrogen bonds to the residues that flank the other (but not vice versa). For example, residue i may form hydrogen bonds to residues j - 1 and j + 1; this is known as a wide pair of hydrogen bonds. By contrast, residue j may hydrogen-bond to different residues altogether, or to none at all. The dihedral angles (phi, psi) are about (-120 degrees, 115 degrees) in parallel sheets." [EBIBS:GAR, UniProt:curation_manual]	4966372	SOFA	SOFA	sequence	6	SO	biological_region	parallel_beta_strand
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001113	"A peptide region which hydrogen bonded to another region of peptide running in the oposite direction (both running N-terminal to C-terminal). This orientation is slightly less stable because it introduces nonplanarity in the inter-strand hydrogen bonding pattern. Hydrogen bonding occurs between every other C=O from one strand to every other N-H on the adjacent strand. In this case, if two atoms C-alpha (i)and C-alpha (j) are adjacent in two hydrogen-bonded beta strands, then they do not hydrogen bond to each other; rather, one residue forms hydrogen bonds to the residues that flank the other (but not vice versa). For example, residue i may form hydrogen bonds to residues j - 1 and j + 1; this is known as a wide pair of hydrogen bonds. By contrast, residue j may hydrogen-bond to different residues altogether, or to none at all. The dihedral angles (phi, psi) are about (-120 degrees, 115 degrees) in parallel sheets." [EBIBS:GAR, UniProt:curation_manual]	5741174	SOFA	SOFA	sequence	7	SO	region	parallel_beta_strand
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001113	"A peptide region which hydrogen bonded to another region of peptide running in the oposite direction (both running N-terminal to C-terminal). This orientation is slightly less stable because it introduces nonplanarity in the inter-strand hydrogen bonding pattern. Hydrogen bonding occurs between every other C=O from one strand to every other N-H on the adjacent strand. In this case, if two atoms C-alpha (i)and C-alpha (j) are adjacent in two hydrogen-bonded beta strands, then they do not hydrogen bond to each other; rather, one residue forms hydrogen bonds to the residues that flank the other (but not vice versa). For example, residue i may form hydrogen bonds to residues j - 1 and j + 1; this is known as a wide pair of hydrogen bonds. By contrast, residue j may hydrogen-bond to different residues altogether, or to none at all. The dihedral angles (phi, psi) are about (-120 degrees, 115 degrees) in parallel sheets." [EBIBS:GAR, UniProt:curation_manual]	6146655	SOFA	SOFA	sequence	8	SO	sequence_feature	parallel_beta_strand
SO:0001114	\N	biosapiens	"A helix is a secondary_structure conformation where the peptide backbone forms a coil." [EBIBS:GAR]	SO:0001114	"A helix is a secondary_structure conformation where the peptide backbone forms a coil." [EBIBS:GAR]	45991	\N	biosapiens	sequence	0	SO	peptide_helix	peptide_helix
SO:0001078	SO:0001114	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001114	"A helix is a secondary_structure conformation where the peptide backbone forms a coil." [EBIBS:GAR]	490705	biosapiens	biosapiens	sequence	1	SO	polypeptide_secondary_structure	peptide_helix
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001114	"A helix is a secondary_structure conformation where the peptide backbone forms a coil." [EBIBS:GAR]	1073254	biosapiens	biosapiens	sequence	2	SO	polypeptide_structural_region	peptide_helix
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001114	"A helix is a secondary_structure conformation where the peptide backbone forms a coil." [EBIBS:GAR]	1904313	biosapiens	biosapiens,SOFA	sequence	3	SO	polypeptide_region	peptide_helix
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001114	"A helix is a secondary_structure conformation where the peptide backbone forms a coil." [EBIBS:GAR]	2928746	biosapiens,SOFA	SOFA	sequence	4	SO	polypeptide	peptide_helix
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001114	"A helix is a secondary_structure conformation where the peptide backbone forms a coil." [EBIBS:GAR]	2928747	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	peptide_helix
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001114	"A helix is a secondary_structure conformation where the peptide backbone forms a coil." [EBIBS:GAR]	4001974	SOFA	SOFA	sequence	5	SO	biological_region	peptide_helix
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001114	"A helix is a secondary_structure conformation where the peptide backbone forms a coil." [EBIBS:GAR]	4966374	SOFA	SOFA	sequence	6	SO	region	peptide_helix
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001114	"A helix is a secondary_structure conformation where the peptide backbone forms a coil." [EBIBS:GAR]	5407448	SOFA	SOFA	sequence	7	SO	sequence_feature	peptide_helix
SO:0001115	\N	biosapiens	"A left handed helix is a region of peptide where the coiled conformation turns in an anticlockwise, left handed screw." [EBIBS:GAR]	SO:0001115	"A left handed helix is a region of peptide where the coiled conformation turns in an anticlockwise, left handed screw." [EBIBS:GAR]	45992	\N	biosapiens	sequence	0	SO	left_handed_peptide_helix	left_handed_peptide_helix
SO:0001114	SO:0001115	biosapiens	"A helix is a secondary_structure conformation where the peptide backbone forms a coil." [EBIBS:GAR]	SO:0001115	"A left handed helix is a region of peptide where the coiled conformation turns in an anticlockwise, left handed screw." [EBIBS:GAR]	490706	biosapiens	biosapiens	sequence	1	SO	peptide_helix	left_handed_peptide_helix
SO:0001078	SO:0001114	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001115	"A left handed helix is a region of peptide where the coiled conformation turns in an anticlockwise, left handed screw." [EBIBS:GAR]	1073255	biosapiens	biosapiens	sequence	2	SO	polypeptide_secondary_structure	left_handed_peptide_helix
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001115	"A left handed helix is a region of peptide where the coiled conformation turns in an anticlockwise, left handed screw." [EBIBS:GAR]	1904314	biosapiens	biosapiens	sequence	3	SO	polypeptide_structural_region	left_handed_peptide_helix
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001115	"A left handed helix is a region of peptide where the coiled conformation turns in an anticlockwise, left handed screw." [EBIBS:GAR]	2928748	biosapiens	biosapiens,SOFA	sequence	4	SO	polypeptide_region	left_handed_peptide_helix
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001115	"A left handed helix is a region of peptide where the coiled conformation turns in an anticlockwise, left handed screw." [EBIBS:GAR]	4001976	biosapiens,SOFA	SOFA	sequence	5	SO	polypeptide	left_handed_peptide_helix
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001115	"A left handed helix is a region of peptide where the coiled conformation turns in an anticlockwise, left handed screw." [EBIBS:GAR]	4001977	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	left_handed_peptide_helix
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001115	"A left handed helix is a region of peptide where the coiled conformation turns in an anticlockwise, left handed screw." [EBIBS:GAR]	4966376	SOFA	SOFA	sequence	6	SO	biological_region	left_handed_peptide_helix
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001115	"A left handed helix is a region of peptide where the coiled conformation turns in an anticlockwise, left handed screw." [EBIBS:GAR]	5741176	SOFA	SOFA	sequence	7	SO	region	left_handed_peptide_helix
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001115	"A left handed helix is a region of peptide where the coiled conformation turns in an anticlockwise, left handed screw." [EBIBS:GAR]	6146656	SOFA	SOFA	sequence	8	SO	sequence_feature	left_handed_peptide_helix
SO:0001116	\N	biosapiens	"A right handed helix is a region of peptide where the coiled conformation turns in a clockwise, right handed screw." [EBIBS:GAR]	SO:0001116	"A right handed helix is a region of peptide where the coiled conformation turns in a clockwise, right handed screw." [EBIBS:GAR]	45993	\N	biosapiens	sequence	0	SO	right_handed_peptide_helix	right_handed_peptide_helix
SO:0001114	SO:0001116	biosapiens	"A helix is a secondary_structure conformation where the peptide backbone forms a coil." [EBIBS:GAR]	SO:0001116	"A right handed helix is a region of peptide where the coiled conformation turns in a clockwise, right handed screw." [EBIBS:GAR]	490707	biosapiens	biosapiens	sequence	1	SO	peptide_helix	right_handed_peptide_helix
SO:0001078	SO:0001114	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001116	"A right handed helix is a region of peptide where the coiled conformation turns in a clockwise, right handed screw." [EBIBS:GAR]	1073256	biosapiens	biosapiens	sequence	2	SO	polypeptide_secondary_structure	right_handed_peptide_helix
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001116	"A right handed helix is a region of peptide where the coiled conformation turns in a clockwise, right handed screw." [EBIBS:GAR]	1904315	biosapiens	biosapiens	sequence	3	SO	polypeptide_structural_region	right_handed_peptide_helix
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001116	"A right handed helix is a region of peptide where the coiled conformation turns in a clockwise, right handed screw." [EBIBS:GAR]	2928749	biosapiens	biosapiens,SOFA	sequence	4	SO	polypeptide_region	right_handed_peptide_helix
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001116	"A right handed helix is a region of peptide where the coiled conformation turns in a clockwise, right handed screw." [EBIBS:GAR]	4001978	biosapiens,SOFA	SOFA	sequence	5	SO	polypeptide	right_handed_peptide_helix
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001116	"A right handed helix is a region of peptide where the coiled conformation turns in a clockwise, right handed screw." [EBIBS:GAR]	4001979	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	right_handed_peptide_helix
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001116	"A right handed helix is a region of peptide where the coiled conformation turns in a clockwise, right handed screw." [EBIBS:GAR]	4966378	SOFA	SOFA	sequence	6	SO	biological_region	right_handed_peptide_helix
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001116	"A right handed helix is a region of peptide where the coiled conformation turns in a clockwise, right handed screw." [EBIBS:GAR]	5741178	SOFA	SOFA	sequence	7	SO	region	right_handed_peptide_helix
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001116	"A right handed helix is a region of peptide where the coiled conformation turns in a clockwise, right handed screw." [EBIBS:GAR]	6146657	SOFA	SOFA	sequence	8	SO	sequence_feature	right_handed_peptide_helix
SO:0001117	\N	biosapiens	"The helix has 3.6 residues per turn which corresponds to a translation of 1.5 angstroms (= 0.15 nm) along the helical axis. Every backbone N-H group donates a hydrogen bond to the backbone C=O group of the amino acid four residues earlier." [EBIBS:GAR]	SO:0001117	"The helix has 3.6 residues per turn which corresponds to a translation of 1.5 angstroms (= 0.15 nm) along the helical axis. Every backbone N-H group donates a hydrogen bond to the backbone C=O group of the amino acid four residues earlier." [EBIBS:GAR]	45994	\N	biosapiens	sequence	0	SO	alpha_helix	alpha_helix
SO:0001116	SO:0001117	biosapiens	"A right handed helix is a region of peptide where the coiled conformation turns in a clockwise, right handed screw." [EBIBS:GAR]	SO:0001117	"The helix has 3.6 residues per turn which corresponds to a translation of 1.5 angstroms (= 0.15 nm) along the helical axis. Every backbone N-H group donates a hydrogen bond to the backbone C=O group of the amino acid four residues earlier." [EBIBS:GAR]	490708	biosapiens	biosapiens	sequence	1	SO	right_handed_peptide_helix	alpha_helix
SO:0001114	SO:0001116	biosapiens	"A helix is a secondary_structure conformation where the peptide backbone forms a coil." [EBIBS:GAR]	SO:0001117	"The helix has 3.6 residues per turn which corresponds to a translation of 1.5 angstroms (= 0.15 nm) along the helical axis. Every backbone N-H group donates a hydrogen bond to the backbone C=O group of the amino acid four residues earlier." [EBIBS:GAR]	1073257	biosapiens	biosapiens	sequence	2	SO	peptide_helix	alpha_helix
SO:0001078	SO:0001114	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001117	"The helix has 3.6 residues per turn which corresponds to a translation of 1.5 angstroms (= 0.15 nm) along the helical axis. Every backbone N-H group donates a hydrogen bond to the backbone C=O group of the amino acid four residues earlier." [EBIBS:GAR]	1904316	biosapiens	biosapiens	sequence	3	SO	polypeptide_secondary_structure	alpha_helix
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001117	"The helix has 3.6 residues per turn which corresponds to a translation of 1.5 angstroms (= 0.15 nm) along the helical axis. Every backbone N-H group donates a hydrogen bond to the backbone C=O group of the amino acid four residues earlier." [EBIBS:GAR]	2928750	biosapiens	biosapiens	sequence	4	SO	polypeptide_structural_region	alpha_helix
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001117	"The helix has 3.6 residues per turn which corresponds to a translation of 1.5 angstroms (= 0.15 nm) along the helical axis. Every backbone N-H group donates a hydrogen bond to the backbone C=O group of the amino acid four residues earlier." [EBIBS:GAR]	4001980	biosapiens	biosapiens,SOFA	sequence	5	SO	polypeptide_region	alpha_helix
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001117	"The helix has 3.6 residues per turn which corresponds to a translation of 1.5 angstroms (= 0.15 nm) along the helical axis. Every backbone N-H group donates a hydrogen bond to the backbone C=O group of the amino acid four residues earlier." [EBIBS:GAR]	4966380	biosapiens,SOFA	SOFA	sequence	6	SO	polypeptide	alpha_helix
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001117	"The helix has 3.6 residues per turn which corresponds to a translation of 1.5 angstroms (= 0.15 nm) along the helical axis. Every backbone N-H group donates a hydrogen bond to the backbone C=O group of the amino acid four residues earlier." [EBIBS:GAR]	4966381	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	alpha_helix
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001117	"The helix has 3.6 residues per turn which corresponds to a translation of 1.5 angstroms (= 0.15 nm) along the helical axis. Every backbone N-H group donates a hydrogen bond to the backbone C=O group of the amino acid four residues earlier." [EBIBS:GAR]	5741180	SOFA	SOFA	sequence	7	SO	biological_region	alpha_helix
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001117	"The helix has 3.6 residues per turn which corresponds to a translation of 1.5 angstroms (= 0.15 nm) along the helical axis. Every backbone N-H group donates a hydrogen bond to the backbone C=O group of the amino acid four residues earlier." [EBIBS:GAR]	6311031	SOFA	SOFA	sequence	8	SO	region	alpha_helix
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001117	"The helix has 3.6 residues per turn which corresponds to a translation of 1.5 angstroms (= 0.15 nm) along the helical axis. Every backbone N-H group donates a hydrogen bond to the backbone C=O group of the amino acid four residues earlier." [EBIBS:GAR]	6631396	SOFA	SOFA	sequence	9	SO	sequence_feature	alpha_helix
SO:0001118	\N	biosapiens	"The pi helix has 4.1 residues per turn and a translation of 1.15  (=0.115 nm) along the helical axis. The N-H group of an amino acid forms a hydrogen bond with the C=O group of the amino acid five residues earlier." [EBIBS:GAR]	SO:0001118	"The pi helix has 4.1 residues per turn and a translation of 1.15  (=0.115 nm) along the helical axis. The N-H group of an amino acid forms a hydrogen bond with the C=O group of the amino acid five residues earlier." [EBIBS:GAR]	45995	\N	biosapiens	sequence	0	SO	pi_helix	pi_helix
SO:0001116	SO:0001118	biosapiens	"A right handed helix is a region of peptide where the coiled conformation turns in a clockwise, right handed screw." [EBIBS:GAR]	SO:0001118	"The pi helix has 4.1 residues per turn and a translation of 1.15  (=0.115 nm) along the helical axis. The N-H group of an amino acid forms a hydrogen bond with the C=O group of the amino acid five residues earlier." [EBIBS:GAR]	490709	biosapiens	biosapiens	sequence	1	SO	right_handed_peptide_helix	pi_helix
SO:0001114	SO:0001116	biosapiens	"A helix is a secondary_structure conformation where the peptide backbone forms a coil." [EBIBS:GAR]	SO:0001118	"The pi helix has 4.1 residues per turn and a translation of 1.15  (=0.115 nm) along the helical axis. The N-H group of an amino acid forms a hydrogen bond with the C=O group of the amino acid five residues earlier." [EBIBS:GAR]	1073258	biosapiens	biosapiens	sequence	2	SO	peptide_helix	pi_helix
SO:0001078	SO:0001114	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001118	"The pi helix has 4.1 residues per turn and a translation of 1.15  (=0.115 nm) along the helical axis. The N-H group of an amino acid forms a hydrogen bond with the C=O group of the amino acid five residues earlier." [EBIBS:GAR]	1904317	biosapiens	biosapiens	sequence	3	SO	polypeptide_secondary_structure	pi_helix
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001118	"The pi helix has 4.1 residues per turn and a translation of 1.15  (=0.115 nm) along the helical axis. The N-H group of an amino acid forms a hydrogen bond with the C=O group of the amino acid five residues earlier." [EBIBS:GAR]	2928751	biosapiens	biosapiens	sequence	4	SO	polypeptide_structural_region	pi_helix
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001118	"The pi helix has 4.1 residues per turn and a translation of 1.15  (=0.115 nm) along the helical axis. The N-H group of an amino acid forms a hydrogen bond with the C=O group of the amino acid five residues earlier." [EBIBS:GAR]	4001981	biosapiens	biosapiens,SOFA	sequence	5	SO	polypeptide_region	pi_helix
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001118	"The pi helix has 4.1 residues per turn and a translation of 1.15  (=0.115 nm) along the helical axis. The N-H group of an amino acid forms a hydrogen bond with the C=O group of the amino acid five residues earlier." [EBIBS:GAR]	4966382	biosapiens,SOFA	SOFA	sequence	6	SO	polypeptide	pi_helix
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001118	"The pi helix has 4.1 residues per turn and a translation of 1.15  (=0.115 nm) along the helical axis. The N-H group of an amino acid forms a hydrogen bond with the C=O group of the amino acid five residues earlier." [EBIBS:GAR]	4966383	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	pi_helix
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001118	"The pi helix has 4.1 residues per turn and a translation of 1.15  (=0.115 nm) along the helical axis. The N-H group of an amino acid forms a hydrogen bond with the C=O group of the amino acid five residues earlier." [EBIBS:GAR]	5741182	SOFA	SOFA	sequence	7	SO	biological_region	pi_helix
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001118	"The pi helix has 4.1 residues per turn and a translation of 1.15  (=0.115 nm) along the helical axis. The N-H group of an amino acid forms a hydrogen bond with the C=O group of the amino acid five residues earlier." [EBIBS:GAR]	6311033	SOFA	SOFA	sequence	8	SO	region	pi_helix
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001118	"The pi helix has 4.1 residues per turn and a translation of 1.15  (=0.115 nm) along the helical axis. The N-H group of an amino acid forms a hydrogen bond with the C=O group of the amino acid five residues earlier." [EBIBS:GAR]	6631397	SOFA	SOFA	sequence	9	SO	sequence_feature	pi_helix
SO:0001119	\N	biosapiens	"The 3-10 helix has 3 residues per turn with a translation of 2.0 angstroms (=0.2 nm) along the helical axis. The N-H group of an amino acid forms a hydrogen bond with the C=O group of the amino acid three residues earlier." [EBIBS:GAR]	SO:0001119	"The 3-10 helix has 3 residues per turn with a translation of 2.0 angstroms (=0.2 nm) along the helical axis. The N-H group of an amino acid forms a hydrogen bond with the C=O group of the amino acid three residues earlier." [EBIBS:GAR]	45996	\N	biosapiens	sequence	0	SO	three_ten_helix	three_ten_helix
SO:0001116	SO:0001119	biosapiens	"A right handed helix is a region of peptide where the coiled conformation turns in a clockwise, right handed screw." [EBIBS:GAR]	SO:0001119	"The 3-10 helix has 3 residues per turn with a translation of 2.0 angstroms (=0.2 nm) along the helical axis. The N-H group of an amino acid forms a hydrogen bond with the C=O group of the amino acid three residues earlier." [EBIBS:GAR]	490710	biosapiens	biosapiens	sequence	1	SO	right_handed_peptide_helix	three_ten_helix
SO:0001114	SO:0001116	biosapiens	"A helix is a secondary_structure conformation where the peptide backbone forms a coil." [EBIBS:GAR]	SO:0001119	"The 3-10 helix has 3 residues per turn with a translation of 2.0 angstroms (=0.2 nm) along the helical axis. The N-H group of an amino acid forms a hydrogen bond with the C=O group of the amino acid three residues earlier." [EBIBS:GAR]	1073259	biosapiens	biosapiens	sequence	2	SO	peptide_helix	three_ten_helix
SO:0001078	SO:0001114	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001119	"The 3-10 helix has 3 residues per turn with a translation of 2.0 angstroms (=0.2 nm) along the helical axis. The N-H group of an amino acid forms a hydrogen bond with the C=O group of the amino acid three residues earlier." [EBIBS:GAR]	1904318	biosapiens	biosapiens	sequence	3	SO	polypeptide_secondary_structure	three_ten_helix
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001119	"The 3-10 helix has 3 residues per turn with a translation of 2.0 angstroms (=0.2 nm) along the helical axis. The N-H group of an amino acid forms a hydrogen bond with the C=O group of the amino acid three residues earlier." [EBIBS:GAR]	2928752	biosapiens	biosapiens	sequence	4	SO	polypeptide_structural_region	three_ten_helix
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001119	"The 3-10 helix has 3 residues per turn with a translation of 2.0 angstroms (=0.2 nm) along the helical axis. The N-H group of an amino acid forms a hydrogen bond with the C=O group of the amino acid three residues earlier." [EBIBS:GAR]	4001982	biosapiens	biosapiens,SOFA	sequence	5	SO	polypeptide_region	three_ten_helix
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001119	"The 3-10 helix has 3 residues per turn with a translation of 2.0 angstroms (=0.2 nm) along the helical axis. The N-H group of an amino acid forms a hydrogen bond with the C=O group of the amino acid three residues earlier." [EBIBS:GAR]	4966384	biosapiens,SOFA	SOFA	sequence	6	SO	polypeptide	three_ten_helix
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001119	"The 3-10 helix has 3 residues per turn with a translation of 2.0 angstroms (=0.2 nm) along the helical axis. The N-H group of an amino acid forms a hydrogen bond with the C=O group of the amino acid three residues earlier." [EBIBS:GAR]	4966385	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	three_ten_helix
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001119	"The 3-10 helix has 3 residues per turn with a translation of 2.0 angstroms (=0.2 nm) along the helical axis. The N-H group of an amino acid forms a hydrogen bond with the C=O group of the amino acid three residues earlier." [EBIBS:GAR]	5741184	SOFA	SOFA	sequence	7	SO	biological_region	three_ten_helix
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001119	"The 3-10 helix has 3 residues per turn with a translation of 2.0 angstroms (=0.2 nm) along the helical axis. The N-H group of an amino acid forms a hydrogen bond with the C=O group of the amino acid three residues earlier." [EBIBS:GAR]	6311035	SOFA	SOFA	sequence	8	SO	region	three_ten_helix
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001119	"The 3-10 helix has 3 residues per turn with a translation of 2.0 angstroms (=0.2 nm) along the helical axis. The N-H group of an amino acid forms a hydrogen bond with the C=O group of the amino acid three residues earlier." [EBIBS:GAR]	6631398	SOFA	SOFA	sequence	9	SO	sequence_feature	three_ten_helix
SO:0001120	\N	biosapiens	"A motif of two consecutive residues with dihedral angles. Nest should not have Proline as any residue. Nests frequently occur as parts of other motifs such as Schellman loops." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001120	"A motif of two consecutive residues with dihedral angles. Nest should not have Proline as any residue. Nests frequently occur as parts of other motifs such as Schellman loops." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	45997	\N	biosapiens	sequence	0	SO	polypeptide_nest_motif	polypeptide_nest_motif
SO:0001078	SO:0001120	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001120	"A motif of two consecutive residues with dihedral angles. Nest should not have Proline as any residue. Nests frequently occur as parts of other motifs such as Schellman loops." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	490711	biosapiens	biosapiens	sequence	1	SO	polypeptide_secondary_structure	polypeptide_nest_motif
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001120	"A motif of two consecutive residues with dihedral angles. Nest should not have Proline as any residue. Nests frequently occur as parts of other motifs such as Schellman loops." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1073260	biosapiens	biosapiens	sequence	2	SO	polypeptide_structural_region	polypeptide_nest_motif
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001120	"A motif of two consecutive residues with dihedral angles. Nest should not have Proline as any residue. Nests frequently occur as parts of other motifs such as Schellman loops." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1904319	biosapiens	biosapiens,SOFA	sequence	3	SO	polypeptide_region	polypeptide_nest_motif
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001120	"A motif of two consecutive residues with dihedral angles. Nest should not have Proline as any residue. Nests frequently occur as parts of other motifs such as Schellman loops." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928753	biosapiens,SOFA	SOFA	sequence	4	SO	polypeptide	polypeptide_nest_motif
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001120	"A motif of two consecutive residues with dihedral angles. Nest should not have Proline as any residue. Nests frequently occur as parts of other motifs such as Schellman loops." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928754	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	polypeptide_nest_motif
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001120	"A motif of two consecutive residues with dihedral angles. Nest should not have Proline as any residue. Nests frequently occur as parts of other motifs such as Schellman loops." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4001983	SOFA	SOFA	sequence	5	SO	biological_region	polypeptide_nest_motif
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001120	"A motif of two consecutive residues with dihedral angles. Nest should not have Proline as any residue. Nests frequently occur as parts of other motifs such as Schellman loops." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966386	SOFA	SOFA	sequence	6	SO	region	polypeptide_nest_motif
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001120	"A motif of two consecutive residues with dihedral angles. Nest should not have Proline as any residue. Nests frequently occur as parts of other motifs such as Schellman loops." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5407449	SOFA	SOFA	sequence	7	SO	sequence_feature	polypeptide_nest_motif
SO:0001121	\N	biosapiens	"A motif of two consecutive residues with dihedral angles: Residue(i): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001121	"A motif of two consecutive residues with dihedral angles: Residue(i): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	45998	\N	biosapiens	sequence	0	SO	polypeptide_nest_left_right_motif	polypeptide_nest_left_right_motif
SO:0001120	SO:0001121	biosapiens	"A motif of two consecutive residues with dihedral angles. Nest should not have Proline as any residue. Nests frequently occur as parts of other motifs such as Schellman loops." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001121	"A motif of two consecutive residues with dihedral angles: Residue(i): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	490712	biosapiens	biosapiens	sequence	1	SO	polypeptide_nest_motif	polypeptide_nest_left_right_motif
SO:0001078	SO:0001120	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001121	"A motif of two consecutive residues with dihedral angles: Residue(i): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1073261	biosapiens	biosapiens	sequence	2	SO	polypeptide_secondary_structure	polypeptide_nest_left_right_motif
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001121	"A motif of two consecutive residues with dihedral angles: Residue(i): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1904320	biosapiens	biosapiens	sequence	3	SO	polypeptide_structural_region	polypeptide_nest_left_right_motif
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001121	"A motif of two consecutive residues with dihedral angles: Residue(i): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928755	biosapiens	biosapiens,SOFA	sequence	4	SO	polypeptide_region	polypeptide_nest_left_right_motif
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001121	"A motif of two consecutive residues with dihedral angles: Residue(i): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4001985	biosapiens,SOFA	SOFA	sequence	5	SO	polypeptide	polypeptide_nest_left_right_motif
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001121	"A motif of two consecutive residues with dihedral angles: Residue(i): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4001986	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	polypeptide_nest_left_right_motif
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001121	"A motif of two consecutive residues with dihedral angles: Residue(i): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966388	SOFA	SOFA	sequence	6	SO	biological_region	polypeptide_nest_left_right_motif
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001121	"A motif of two consecutive residues with dihedral angles: Residue(i): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5741186	SOFA	SOFA	sequence	7	SO	region	polypeptide_nest_left_right_motif
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001121	"A motif of two consecutive residues with dihedral angles: Residue(i): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6146658	SOFA	SOFA	sequence	8	SO	sequence_feature	polypeptide_nest_left_right_motif
SO:0001122	\N	biosapiens	"A motif of two consecutive residues with dihedral angles: Residue(i): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001122	"A motif of two consecutive residues with dihedral angles: Residue(i): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	45999	\N	biosapiens	sequence	0	SO	polypeptide_nest_right_left_motif	polypeptide_nest_right_left_motif
SO:0001120	SO:0001122	biosapiens	"A motif of two consecutive residues with dihedral angles. Nest should not have Proline as any residue. Nests frequently occur as parts of other motifs such as Schellman loops." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001122	"A motif of two consecutive residues with dihedral angles: Residue(i): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	490713	biosapiens	biosapiens	sequence	1	SO	polypeptide_nest_motif	polypeptide_nest_right_left_motif
SO:0001078	SO:0001120	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001122	"A motif of two consecutive residues with dihedral angles: Residue(i): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1073262	biosapiens	biosapiens	sequence	2	SO	polypeptide_secondary_structure	polypeptide_nest_right_left_motif
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001122	"A motif of two consecutive residues with dihedral angles: Residue(i): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1904321	biosapiens	biosapiens	sequence	3	SO	polypeptide_structural_region	polypeptide_nest_right_left_motif
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001122	"A motif of two consecutive residues with dihedral angles: Residue(i): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928756	biosapiens	biosapiens,SOFA	sequence	4	SO	polypeptide_region	polypeptide_nest_right_left_motif
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001122	"A motif of two consecutive residues with dihedral angles: Residue(i): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4001987	biosapiens,SOFA	SOFA	sequence	5	SO	polypeptide	polypeptide_nest_right_left_motif
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001122	"A motif of two consecutive residues with dihedral angles: Residue(i): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4001988	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	polypeptide_nest_right_left_motif
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001122	"A motif of two consecutive residues with dihedral angles: Residue(i): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966390	SOFA	SOFA	sequence	6	SO	biological_region	polypeptide_nest_right_left_motif
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001122	"A motif of two consecutive residues with dihedral angles: Residue(i): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5741188	SOFA	SOFA	sequence	7	SO	region	polypeptide_nest_right_left_motif
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001122	"A motif of two consecutive residues with dihedral angles: Residue(i): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6146659	SOFA	SOFA	sequence	8	SO	sequence_feature	polypeptide_nest_right_left_motif
SO:0001123	\N	biosapiens	"A motif of six or seven consecutive residues that contains two H-bonds." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001123	"A motif of six or seven consecutive residues that contains two H-bonds." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	46000	\N	biosapiens	sequence	0	SO	schellmann_loop	schellmann_loop
SO:0001078	SO:0001123	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001123	"A motif of six or seven consecutive residues that contains two H-bonds." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	490714	biosapiens	biosapiens	sequence	1	SO	polypeptide_secondary_structure	schellmann_loop
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001123	"A motif of six or seven consecutive residues that contains two H-bonds." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1073263	biosapiens	biosapiens	sequence	2	SO	polypeptide_structural_region	schellmann_loop
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001123	"A motif of six or seven consecutive residues that contains two H-bonds." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1904322	biosapiens	biosapiens,SOFA	sequence	3	SO	polypeptide_region	schellmann_loop
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001123	"A motif of six or seven consecutive residues that contains two H-bonds." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928757	biosapiens,SOFA	SOFA	sequence	4	SO	polypeptide	schellmann_loop
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001123	"A motif of six or seven consecutive residues that contains two H-bonds." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928758	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	schellmann_loop
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001123	"A motif of six or seven consecutive residues that contains two H-bonds." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4001989	SOFA	SOFA	sequence	5	SO	biological_region	schellmann_loop
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001123	"A motif of six or seven consecutive residues that contains two H-bonds." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966392	SOFA	SOFA	sequence	6	SO	region	schellmann_loop
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001123	"A motif of six or seven consecutive residues that contains two H-bonds." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5407450	SOFA	SOFA	sequence	7	SO	sequence_feature	schellmann_loop
SO:0001124	\N	biosapiens	"Wild type: A motif of seven consecutive residues that contains two H-bonds in which: the main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+6), the main-chain CO of residue(i+1) is H-bonded to the main-chain NH of residue(i+5)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001124	"Wild type: A motif of seven consecutive residues that contains two H-bonds in which: the main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+6), the main-chain CO of residue(i+1) is H-bonded to the main-chain NH of residue(i+5)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	46001	\N	biosapiens	sequence	0	SO	schellmann_loop_seven	schellmann_loop_seven
SO:0001123	SO:0001124	biosapiens	"A motif of six or seven consecutive residues that contains two H-bonds." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001124	"Wild type: A motif of seven consecutive residues that contains two H-bonds in which: the main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+6), the main-chain CO of residue(i+1) is H-bonded to the main-chain NH of residue(i+5)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	490715	biosapiens	biosapiens	sequence	1	SO	schellmann_loop	schellmann_loop_seven
SO:0001078	SO:0001123	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001124	"Wild type: A motif of seven consecutive residues that contains two H-bonds in which: the main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+6), the main-chain CO of residue(i+1) is H-bonded to the main-chain NH of residue(i+5)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1073264	biosapiens	biosapiens	sequence	2	SO	polypeptide_secondary_structure	schellmann_loop_seven
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001124	"Wild type: A motif of seven consecutive residues that contains two H-bonds in which: the main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+6), the main-chain CO of residue(i+1) is H-bonded to the main-chain NH of residue(i+5)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1904323	biosapiens	biosapiens	sequence	3	SO	polypeptide_structural_region	schellmann_loop_seven
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001124	"Wild type: A motif of seven consecutive residues that contains two H-bonds in which: the main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+6), the main-chain CO of residue(i+1) is H-bonded to the main-chain NH of residue(i+5)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928759	biosapiens	biosapiens,SOFA	sequence	4	SO	polypeptide_region	schellmann_loop_seven
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001124	"Wild type: A motif of seven consecutive residues that contains two H-bonds in which: the main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+6), the main-chain CO of residue(i+1) is H-bonded to the main-chain NH of residue(i+5)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4001991	biosapiens,SOFA	SOFA	sequence	5	SO	polypeptide	schellmann_loop_seven
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001124	"Wild type: A motif of seven consecutive residues that contains two H-bonds in which: the main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+6), the main-chain CO of residue(i+1) is H-bonded to the main-chain NH of residue(i+5)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4001992	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	schellmann_loop_seven
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001124	"Wild type: A motif of seven consecutive residues that contains two H-bonds in which: the main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+6), the main-chain CO of residue(i+1) is H-bonded to the main-chain NH of residue(i+5)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966394	SOFA	SOFA	sequence	6	SO	biological_region	schellmann_loop_seven
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001124	"Wild type: A motif of seven consecutive residues that contains two H-bonds in which: the main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+6), the main-chain CO of residue(i+1) is H-bonded to the main-chain NH of residue(i+5)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5741190	SOFA	SOFA	sequence	7	SO	region	schellmann_loop_seven
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001124	"Wild type: A motif of seven consecutive residues that contains two H-bonds in which: the main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+6), the main-chain CO of residue(i+1) is H-bonded to the main-chain NH of residue(i+5)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6146660	SOFA	SOFA	sequence	8	SO	sequence_feature	schellmann_loop_seven
SO:0001125	\N	biosapiens	"Common Type: A motif of six consecutive residues that contains two H-bonds in which: the main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+5) the main-chain CO of residue(i+1) is H-bonded to the main-chain NH of residue(i+4)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001125	"Common Type: A motif of six consecutive residues that contains two H-bonds in which: the main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+5) the main-chain CO of residue(i+1) is H-bonded to the main-chain NH of residue(i+4)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	46002	\N	biosapiens	sequence	0	SO	schellmann_loop_six	schellmann_loop_six
SO:0001123	SO:0001125	biosapiens	"A motif of six or seven consecutive residues that contains two H-bonds." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001125	"Common Type: A motif of six consecutive residues that contains two H-bonds in which: the main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+5) the main-chain CO of residue(i+1) is H-bonded to the main-chain NH of residue(i+4)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	490716	biosapiens	biosapiens	sequence	1	SO	schellmann_loop	schellmann_loop_six
SO:0001078	SO:0001123	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001125	"Common Type: A motif of six consecutive residues that contains two H-bonds in which: the main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+5) the main-chain CO of residue(i+1) is H-bonded to the main-chain NH of residue(i+4)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1073265	biosapiens	biosapiens	sequence	2	SO	polypeptide_secondary_structure	schellmann_loop_six
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001125	"Common Type: A motif of six consecutive residues that contains two H-bonds in which: the main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+5) the main-chain CO of residue(i+1) is H-bonded to the main-chain NH of residue(i+4)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1904324	biosapiens	biosapiens	sequence	3	SO	polypeptide_structural_region	schellmann_loop_six
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001125	"Common Type: A motif of six consecutive residues that contains two H-bonds in which: the main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+5) the main-chain CO of residue(i+1) is H-bonded to the main-chain NH of residue(i+4)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928760	biosapiens	biosapiens,SOFA	sequence	4	SO	polypeptide_region	schellmann_loop_six
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001125	"Common Type: A motif of six consecutive residues that contains two H-bonds in which: the main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+5) the main-chain CO of residue(i+1) is H-bonded to the main-chain NH of residue(i+4)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4001993	biosapiens,SOFA	SOFA	sequence	5	SO	polypeptide	schellmann_loop_six
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001125	"Common Type: A motif of six consecutive residues that contains two H-bonds in which: the main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+5) the main-chain CO of residue(i+1) is H-bonded to the main-chain NH of residue(i+4)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4001994	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	schellmann_loop_six
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001125	"Common Type: A motif of six consecutive residues that contains two H-bonds in which: the main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+5) the main-chain CO of residue(i+1) is H-bonded to the main-chain NH of residue(i+4)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966396	SOFA	SOFA	sequence	6	SO	biological_region	schellmann_loop_six
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001125	"Common Type: A motif of six consecutive residues that contains two H-bonds in which: the main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+5) the main-chain CO of residue(i+1) is H-bonded to the main-chain NH of residue(i+4)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5741192	SOFA	SOFA	sequence	7	SO	region	schellmann_loop_six
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001125	"Common Type: A motif of six consecutive residues that contains two H-bonds in which: the main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+5) the main-chain CO of residue(i+1) is H-bonded to the main-chain NH of residue(i+4)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6146661	SOFA	SOFA	sequence	8	SO	sequence_feature	schellmann_loop_six
SO:0001126	\N	biosapiens	"A motif of five consecutive residues and two hydrogen bonds in which: residue(i) is Serine (S) or Threonine (T), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2) or (i+3) , the main-chain CO group of residue(i) is H-bonded to the main-chain NH of residue(i+3) or (i+4)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001126	"A motif of five consecutive residues and two hydrogen bonds in which: residue(i) is Serine (S) or Threonine (T), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2) or (i+3) , the main-chain CO group of residue(i) is H-bonded to the main-chain NH of residue(i+3) or (i+4)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	46003	\N	biosapiens	sequence	0	SO	serine_threonine_motif	serine_threonine_motif
SO:0001078	SO:0001126	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001126	"A motif of five consecutive residues and two hydrogen bonds in which: residue(i) is Serine (S) or Threonine (T), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2) or (i+3) , the main-chain CO group of residue(i) is H-bonded to the main-chain NH of residue(i+3) or (i+4)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	490717	biosapiens	biosapiens	sequence	1	SO	polypeptide_secondary_structure	serine_threonine_motif
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001126	"A motif of five consecutive residues and two hydrogen bonds in which: residue(i) is Serine (S) or Threonine (T), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2) or (i+3) , the main-chain CO group of residue(i) is H-bonded to the main-chain NH of residue(i+3) or (i+4)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1073266	biosapiens	biosapiens	sequence	2	SO	polypeptide_structural_region	serine_threonine_motif
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001126	"A motif of five consecutive residues and two hydrogen bonds in which: residue(i) is Serine (S) or Threonine (T), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2) or (i+3) , the main-chain CO group of residue(i) is H-bonded to the main-chain NH of residue(i+3) or (i+4)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1904325	biosapiens	biosapiens,SOFA	sequence	3	SO	polypeptide_region	serine_threonine_motif
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001126	"A motif of five consecutive residues and two hydrogen bonds in which: residue(i) is Serine (S) or Threonine (T), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2) or (i+3) , the main-chain CO group of residue(i) is H-bonded to the main-chain NH of residue(i+3) or (i+4)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928761	biosapiens,SOFA	SOFA	sequence	4	SO	polypeptide	serine_threonine_motif
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001126	"A motif of five consecutive residues and two hydrogen bonds in which: residue(i) is Serine (S) or Threonine (T), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2) or (i+3) , the main-chain CO group of residue(i) is H-bonded to the main-chain NH of residue(i+3) or (i+4)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928762	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	serine_threonine_motif
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001126	"A motif of five consecutive residues and two hydrogen bonds in which: residue(i) is Serine (S) or Threonine (T), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2) or (i+3) , the main-chain CO group of residue(i) is H-bonded to the main-chain NH of residue(i+3) or (i+4)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4001995	SOFA	SOFA	sequence	5	SO	biological_region	serine_threonine_motif
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001126	"A motif of five consecutive residues and two hydrogen bonds in which: residue(i) is Serine (S) or Threonine (T), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2) or (i+3) , the main-chain CO group of residue(i) is H-bonded to the main-chain NH of residue(i+3) or (i+4)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966398	SOFA	SOFA	sequence	6	SO	region	serine_threonine_motif
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001126	"A motif of five consecutive residues and two hydrogen bonds in which: residue(i) is Serine (S) or Threonine (T), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2) or (i+3) , the main-chain CO group of residue(i) is H-bonded to the main-chain NH of residue(i+3) or (i+4)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5407451	SOFA	SOFA	sequence	7	SO	sequence_feature	serine_threonine_motif
SO:0001127	\N	biosapiens	"A motif of four or five consecutive residues and one H-bond in which: residue(i) is Serine (S) or Threonine (T), the side-chain OH of residue(i) is H-bonded to the main-chain CO of residue(i3) or (i4), Phi angles of residues(i1), (i2) and (i3) are negative." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001127	"A motif of four or five consecutive residues and one H-bond in which: residue(i) is Serine (S) or Threonine (T), the side-chain OH of residue(i) is H-bonded to the main-chain CO of residue(i3) or (i4), Phi angles of residues(i1), (i2) and (i3) are negative." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	46004	\N	biosapiens	sequence	0	SO	serine_threonine_staple_motif	serine_threonine_staple_motif
SO:0001078	SO:0001127	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001127	"A motif of four or five consecutive residues and one H-bond in which: residue(i) is Serine (S) or Threonine (T), the side-chain OH of residue(i) is H-bonded to the main-chain CO of residue(i3) or (i4), Phi angles of residues(i1), (i2) and (i3) are negative." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	490718	biosapiens	biosapiens	sequence	1	SO	polypeptide_secondary_structure	serine_threonine_staple_motif
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001127	"A motif of four or five consecutive residues and one H-bond in which: residue(i) is Serine (S) or Threonine (T), the side-chain OH of residue(i) is H-bonded to the main-chain CO of residue(i3) or (i4), Phi angles of residues(i1), (i2) and (i3) are negative." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1073267	biosapiens	biosapiens	sequence	2	SO	polypeptide_structural_region	serine_threonine_staple_motif
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001127	"A motif of four or five consecutive residues and one H-bond in which: residue(i) is Serine (S) or Threonine (T), the side-chain OH of residue(i) is H-bonded to the main-chain CO of residue(i3) or (i4), Phi angles of residues(i1), (i2) and (i3) are negative." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1904326	biosapiens	biosapiens,SOFA	sequence	3	SO	polypeptide_region	serine_threonine_staple_motif
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001127	"A motif of four or five consecutive residues and one H-bond in which: residue(i) is Serine (S) or Threonine (T), the side-chain OH of residue(i) is H-bonded to the main-chain CO of residue(i3) or (i4), Phi angles of residues(i1), (i2) and (i3) are negative." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928763	biosapiens,SOFA	SOFA	sequence	4	SO	polypeptide	serine_threonine_staple_motif
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001127	"A motif of four or five consecutive residues and one H-bond in which: residue(i) is Serine (S) or Threonine (T), the side-chain OH of residue(i) is H-bonded to the main-chain CO of residue(i3) or (i4), Phi angles of residues(i1), (i2) and (i3) are negative." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928764	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	serine_threonine_staple_motif
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001127	"A motif of four or five consecutive residues and one H-bond in which: residue(i) is Serine (S) or Threonine (T), the side-chain OH of residue(i) is H-bonded to the main-chain CO of residue(i3) or (i4), Phi angles of residues(i1), (i2) and (i3) are negative." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4001997	SOFA	SOFA	sequence	5	SO	biological_region	serine_threonine_staple_motif
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001127	"A motif of four or five consecutive residues and one H-bond in which: residue(i) is Serine (S) or Threonine (T), the side-chain OH of residue(i) is H-bonded to the main-chain CO of residue(i3) or (i4), Phi angles of residues(i1), (i2) and (i3) are negative." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966400	SOFA	SOFA	sequence	6	SO	region	serine_threonine_staple_motif
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001127	"A motif of four or five consecutive residues and one H-bond in which: residue(i) is Serine (S) or Threonine (T), the side-chain OH of residue(i) is H-bonded to the main-chain CO of residue(i3) or (i4), Phi angles of residues(i1), (i2) and (i3) are negative." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5407452	SOFA	SOFA	sequence	7	SO	sequence_feature	serine_threonine_staple_motif
SO:0001128	\N	biosapiens	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	SO:0001128	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	46005	\N	biosapiens	sequence	0	SO	polypeptide_turn_motif	polypeptide_turn_motif
SO:0001078	SO:0001128	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001128	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	490719	biosapiens	biosapiens	sequence	1	SO	polypeptide_secondary_structure	polypeptide_turn_motif
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001128	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	1073268	biosapiens	biosapiens	sequence	2	SO	polypeptide_structural_region	polypeptide_turn_motif
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001128	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	1904327	biosapiens	biosapiens,SOFA	sequence	3	SO	polypeptide_region	polypeptide_turn_motif
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001128	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	2928765	biosapiens,SOFA	SOFA	sequence	4	SO	polypeptide	polypeptide_turn_motif
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001128	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	2928766	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	polypeptide_turn_motif
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001128	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	4001999	SOFA	SOFA	sequence	5	SO	biological_region	polypeptide_turn_motif
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001128	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	4966402	SOFA	SOFA	sequence	6	SO	region	polypeptide_turn_motif
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001128	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	5407453	SOFA	SOFA	sequence	7	SO	sequence_feature	polypeptide_turn_motif
SO:0001129	\N	biosapiens	"Left handed type I (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, -90 degrees < psi +120 degrees < +40 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001129	"Left handed type I (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, -90 degrees < psi +120 degrees < +40 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	46006	\N	biosapiens	sequence	0	SO	asx_turn_left_handed_type_one	asx_turn_left_handed_type_one
SO:0000912	SO:0001129	biosapiens	"A motif of three consecutive residues and one H-bond in which: residue(i) is Aspartate or Asparagine (Asx), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2)." [http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001129	"Left handed type I (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, -90 degrees < psi +120 degrees < +40 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	490720	biosapiens	biosapiens	sequence	1	SO	asx_turn	asx_turn_left_handed_type_one
SO:0001128	SO:0000912	biosapiens	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	SO:0001129	"Left handed type I (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, -90 degrees < psi +120 degrees < +40 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1073269	biosapiens	biosapiens	sequence	2	SO	polypeptide_turn_motif	asx_turn_left_handed_type_one
SO:0001078	SO:0001128	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001129	"Left handed type I (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, -90 degrees < psi +120 degrees < +40 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1904328	biosapiens	biosapiens	sequence	3	SO	polypeptide_secondary_structure	asx_turn_left_handed_type_one
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001129	"Left handed type I (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, -90 degrees < psi +120 degrees < +40 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928767	biosapiens	biosapiens	sequence	4	SO	polypeptide_structural_region	asx_turn_left_handed_type_one
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001129	"Left handed type I (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, -90 degrees < psi +120 degrees < +40 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4002001	biosapiens	biosapiens,SOFA	sequence	5	SO	polypeptide_region	asx_turn_left_handed_type_one
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001129	"Left handed type I (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, -90 degrees < psi +120 degrees < +40 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966404	biosapiens,SOFA	SOFA	sequence	6	SO	polypeptide	asx_turn_left_handed_type_one
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001129	"Left handed type I (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, -90 degrees < psi +120 degrees < +40 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966405	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	asx_turn_left_handed_type_one
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001129	"Left handed type I (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, -90 degrees < psi +120 degrees < +40 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5741194	SOFA	SOFA	sequence	7	SO	biological_region	asx_turn_left_handed_type_one
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001129	"Left handed type I (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, -90 degrees < psi +120 degrees < +40 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6311037	SOFA	SOFA	sequence	8	SO	region	asx_turn_left_handed_type_one
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001129	"Left handed type I (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, -90 degrees < psi +120 degrees < +40 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6631399	SOFA	SOFA	sequence	9	SO	sequence_feature	asx_turn_left_handed_type_one
SO:0001130	\N	biosapiens	"Left handed type II (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, +80 degrees < psi +120 degrees < +180 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001130	"Left handed type II (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, +80 degrees < psi +120 degrees < +180 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	46007	\N	biosapiens	sequence	0	SO	asx_turn_left_handed_type_two	asx_turn_left_handed_type_two
SO:0000912	SO:0001130	biosapiens	"A motif of three consecutive residues and one H-bond in which: residue(i) is Aspartate or Asparagine (Asx), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2)." [http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001130	"Left handed type II (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, +80 degrees < psi +120 degrees < +180 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	490721	biosapiens	biosapiens	sequence	1	SO	asx_turn	asx_turn_left_handed_type_two
SO:0001128	SO:0000912	biosapiens	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	SO:0001130	"Left handed type II (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, +80 degrees < psi +120 degrees < +180 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1073270	biosapiens	biosapiens	sequence	2	SO	polypeptide_turn_motif	asx_turn_left_handed_type_two
SO:0001078	SO:0001128	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001130	"Left handed type II (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, +80 degrees < psi +120 degrees < +180 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1904329	biosapiens	biosapiens	sequence	3	SO	polypeptide_secondary_structure	asx_turn_left_handed_type_two
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001130	"Left handed type II (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, +80 degrees < psi +120 degrees < +180 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928768	biosapiens	biosapiens	sequence	4	SO	polypeptide_structural_region	asx_turn_left_handed_type_two
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001130	"Left handed type II (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, +80 degrees < psi +120 degrees < +180 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4002002	biosapiens	biosapiens,SOFA	sequence	5	SO	polypeptide_region	asx_turn_left_handed_type_two
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001130	"Left handed type II (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, +80 degrees < psi +120 degrees < +180 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966406	biosapiens,SOFA	SOFA	sequence	6	SO	polypeptide	asx_turn_left_handed_type_two
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001130	"Left handed type II (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, +80 degrees < psi +120 degrees < +180 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966407	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	asx_turn_left_handed_type_two
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001130	"Left handed type II (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, +80 degrees < psi +120 degrees < +180 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5741196	SOFA	SOFA	sequence	7	SO	biological_region	asx_turn_left_handed_type_two
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001130	"Left handed type II (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, +80 degrees < psi +120 degrees < +180 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6311039	SOFA	SOFA	sequence	8	SO	region	asx_turn_left_handed_type_two
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001130	"Left handed type II (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, +80 degrees < psi +120 degrees < +180 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6631400	SOFA	SOFA	sequence	9	SO	sequence_feature	asx_turn_left_handed_type_two
SO:0001131	\N	biosapiens	"Right handed type II (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, +80 degrees < psi +120 degrees < +180 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001131	"Right handed type II (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, +80 degrees < psi +120 degrees < +180 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	46008	\N	biosapiens	sequence	0	SO	asx_turn_right_handed_type_two	asx_turn_right_handed_type_two
SO:0000912	SO:0001131	biosapiens	"A motif of three consecutive residues and one H-bond in which: residue(i) is Aspartate or Asparagine (Asx), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2)." [http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001131	"Right handed type II (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, +80 degrees < psi +120 degrees < +180 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	490722	biosapiens	biosapiens	sequence	1	SO	asx_turn	asx_turn_right_handed_type_two
SO:0001128	SO:0000912	biosapiens	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	SO:0001131	"Right handed type II (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, +80 degrees < psi +120 degrees < +180 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1073271	biosapiens	biosapiens	sequence	2	SO	polypeptide_turn_motif	asx_turn_right_handed_type_two
SO:0001078	SO:0001128	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001131	"Right handed type II (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, +80 degrees < psi +120 degrees < +180 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1904330	biosapiens	biosapiens	sequence	3	SO	polypeptide_secondary_structure	asx_turn_right_handed_type_two
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001131	"Right handed type II (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, +80 degrees < psi +120 degrees < +180 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928769	biosapiens	biosapiens	sequence	4	SO	polypeptide_structural_region	asx_turn_right_handed_type_two
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001131	"Right handed type II (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, +80 degrees < psi +120 degrees < +180 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4002003	biosapiens	biosapiens,SOFA	sequence	5	SO	polypeptide_region	asx_turn_right_handed_type_two
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001131	"Right handed type II (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, +80 degrees < psi +120 degrees < +180 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966408	biosapiens,SOFA	SOFA	sequence	6	SO	polypeptide	asx_turn_right_handed_type_two
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001131	"Right handed type II (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, +80 degrees < psi +120 degrees < +180 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966409	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	asx_turn_right_handed_type_two
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001131	"Right handed type II (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, +80 degrees < psi +120 degrees < +180 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5741198	SOFA	SOFA	sequence	7	SO	biological_region	asx_turn_right_handed_type_two
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001131	"Right handed type II (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, +80 degrees < psi +120 degrees < +180 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6311041	SOFA	SOFA	sequence	8	SO	region	asx_turn_right_handed_type_two
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001131	"Right handed type II (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, +80 degrees < psi +120 degrees < +180 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6631401	SOFA	SOFA	sequence	9	SO	sequence_feature	asx_turn_right_handed_type_two
SO:0001132	\N	biosapiens	"Right handed type I (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, -90 degrees < psi +120 degrees < +40 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001132	"Right handed type I (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, -90 degrees < psi +120 degrees < +40 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	46009	\N	biosapiens	sequence	0	SO	asx_turn_right_handed_type_one	asx_turn_right_handed_type_one
SO:0000912	SO:0001132	biosapiens	"A motif of three consecutive residues and one H-bond in which: residue(i) is Aspartate or Asparagine (Asx), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2)." [http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001132	"Right handed type I (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, -90 degrees < psi +120 degrees < +40 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	490723	biosapiens	biosapiens	sequence	1	SO	asx_turn	asx_turn_right_handed_type_one
SO:0001128	SO:0000912	biosapiens	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	SO:0001132	"Right handed type I (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, -90 degrees < psi +120 degrees < +40 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1073272	biosapiens	biosapiens	sequence	2	SO	polypeptide_turn_motif	asx_turn_right_handed_type_one
SO:0001078	SO:0001128	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001132	"Right handed type I (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, -90 degrees < psi +120 degrees < +40 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1904331	biosapiens	biosapiens	sequence	3	SO	polypeptide_secondary_structure	asx_turn_right_handed_type_one
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001132	"Right handed type I (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, -90 degrees < psi +120 degrees < +40 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928770	biosapiens	biosapiens	sequence	4	SO	polypeptide_structural_region	asx_turn_right_handed_type_one
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001132	"Right handed type I (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, -90 degrees < psi +120 degrees < +40 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4002004	biosapiens	biosapiens,SOFA	sequence	5	SO	polypeptide_region	asx_turn_right_handed_type_one
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001132	"Right handed type I (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, -90 degrees < psi +120 degrees < +40 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966410	biosapiens,SOFA	SOFA	sequence	6	SO	polypeptide	asx_turn_right_handed_type_one
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001132	"Right handed type I (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, -90 degrees < psi +120 degrees < +40 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966411	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	asx_turn_right_handed_type_one
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001132	"Right handed type I (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, -90 degrees < psi +120 degrees < +40 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5741200	SOFA	SOFA	sequence	7	SO	biological_region	asx_turn_right_handed_type_one
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001132	"Right handed type I (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, -90 degrees < psi +120 degrees < +40 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6311043	SOFA	SOFA	sequence	8	SO	region	asx_turn_right_handed_type_one
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001132	"Right handed type I (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, -90 degrees < psi +120 degrees < +40 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6631402	SOFA	SOFA	sequence	9	SO	sequence_feature	asx_turn_right_handed_type_one
SO:0001133	\N	biosapiens	"A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles of the second and third residues, which are the basis for sub-categorization." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001133	"A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles of the second and third residues, which are the basis for sub-categorization." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	46010	\N	biosapiens	sequence	0	SO	beta_turn	beta_turn
SO:0001128	SO:0001133	biosapiens	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	SO:0001133	"A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles of the second and third residues, which are the basis for sub-categorization." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	490724	biosapiens	biosapiens	sequence	1	SO	polypeptide_turn_motif	beta_turn
SO:0001078	SO:0001128	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001133	"A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles of the second and third residues, which are the basis for sub-categorization." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1073273	biosapiens	biosapiens	sequence	2	SO	polypeptide_secondary_structure	beta_turn
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001133	"A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles of the second and third residues, which are the basis for sub-categorization." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1904332	biosapiens	biosapiens	sequence	3	SO	polypeptide_structural_region	beta_turn
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001133	"A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles of the second and third residues, which are the basis for sub-categorization." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928771	biosapiens	biosapiens,SOFA	sequence	4	SO	polypeptide_region	beta_turn
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001133	"A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles of the second and third residues, which are the basis for sub-categorization." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4002005	biosapiens,SOFA	SOFA	sequence	5	SO	polypeptide	beta_turn
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001133	"A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles of the second and third residues, which are the basis for sub-categorization." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4002006	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	beta_turn
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001133	"A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles of the second and third residues, which are the basis for sub-categorization." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966412	SOFA	SOFA	sequence	6	SO	biological_region	beta_turn
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001133	"A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles of the second and third residues, which are the basis for sub-categorization." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5741202	SOFA	SOFA	sequence	7	SO	region	beta_turn
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001133	"A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles of the second and third residues, which are the basis for sub-categorization." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6146662	SOFA	SOFA	sequence	8	SO	sequence_feature	beta_turn
SO:0001134	\N	biosapiens	"Left handed type I:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles:- Residue(i+1): -140 degrees > phi > -20 degrees, -90 degrees > psi > +40 degrees. Residue(i+2): -140 degrees > phi > -20 degrees, -90 degrees > psi > +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001134	"Left handed type I:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles:- Residue(i+1): -140 degrees > phi > -20 degrees, -90 degrees > psi > +40 degrees. Residue(i+2): -140 degrees > phi > -20 degrees, -90 degrees > psi > +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	46011	\N	biosapiens	sequence	0	SO	beta_turn_left_handed_type_one	beta_turn_left_handed_type_one
SO:0001133	SO:0001134	biosapiens	"A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles of the second and third residues, which are the basis for sub-categorization." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001134	"Left handed type I:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles:- Residue(i+1): -140 degrees > phi > -20 degrees, -90 degrees > psi > +40 degrees. Residue(i+2): -140 degrees > phi > -20 degrees, -90 degrees > psi > +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	490725	biosapiens	biosapiens	sequence	1	SO	beta_turn	beta_turn_left_handed_type_one
SO:0001128	SO:0001133	biosapiens	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	SO:0001134	"Left handed type I:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles:- Residue(i+1): -140 degrees > phi > -20 degrees, -90 degrees > psi > +40 degrees. Residue(i+2): -140 degrees > phi > -20 degrees, -90 degrees > psi > +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1073274	biosapiens	biosapiens	sequence	2	SO	polypeptide_turn_motif	beta_turn_left_handed_type_one
SO:0001078	SO:0001128	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001134	"Left handed type I:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles:- Residue(i+1): -140 degrees > phi > -20 degrees, -90 degrees > psi > +40 degrees. Residue(i+2): -140 degrees > phi > -20 degrees, -90 degrees > psi > +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1904333	biosapiens	biosapiens	sequence	3	SO	polypeptide_secondary_structure	beta_turn_left_handed_type_one
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001134	"Left handed type I:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles:- Residue(i+1): -140 degrees > phi > -20 degrees, -90 degrees > psi > +40 degrees. Residue(i+2): -140 degrees > phi > -20 degrees, -90 degrees > psi > +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928772	biosapiens	biosapiens	sequence	4	SO	polypeptide_structural_region	beta_turn_left_handed_type_one
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001134	"Left handed type I:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles:- Residue(i+1): -140 degrees > phi > -20 degrees, -90 degrees > psi > +40 degrees. Residue(i+2): -140 degrees > phi > -20 degrees, -90 degrees > psi > +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4002007	biosapiens	biosapiens,SOFA	sequence	5	SO	polypeptide_region	beta_turn_left_handed_type_one
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001134	"Left handed type I:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles:- Residue(i+1): -140 degrees > phi > -20 degrees, -90 degrees > psi > +40 degrees. Residue(i+2): -140 degrees > phi > -20 degrees, -90 degrees > psi > +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966414	biosapiens,SOFA	SOFA	sequence	6	SO	polypeptide	beta_turn_left_handed_type_one
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001134	"Left handed type I:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles:- Residue(i+1): -140 degrees > phi > -20 degrees, -90 degrees > psi > +40 degrees. Residue(i+2): -140 degrees > phi > -20 degrees, -90 degrees > psi > +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966415	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	beta_turn_left_handed_type_one
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001134	"Left handed type I:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles:- Residue(i+1): -140 degrees > phi > -20 degrees, -90 degrees > psi > +40 degrees. Residue(i+2): -140 degrees > phi > -20 degrees, -90 degrees > psi > +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5741204	SOFA	SOFA	sequence	7	SO	biological_region	beta_turn_left_handed_type_one
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001134	"Left handed type I:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles:- Residue(i+1): -140 degrees > phi > -20 degrees, -90 degrees > psi > +40 degrees. Residue(i+2): -140 degrees > phi > -20 degrees, -90 degrees > psi > +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6311045	SOFA	SOFA	sequence	8	SO	region	beta_turn_left_handed_type_one
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001134	"Left handed type I:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles:- Residue(i+1): -140 degrees > phi > -20 degrees, -90 degrees > psi > +40 degrees. Residue(i+2): -140 degrees > phi > -20 degrees, -90 degrees > psi > +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6631403	SOFA	SOFA	sequence	9	SO	sequence_feature	beta_turn_left_handed_type_one
SO:0001135	\N	biosapiens	"Left handed type II: A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees > phi > -20 degrees, +80 degrees > psi > +180 degrees. Residue(i+2): +20 degrees > phi > +140 degrees, -40 degrees > psi > +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001135	"Left handed type II: A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees > phi > -20 degrees, +80 degrees > psi > +180 degrees. Residue(i+2): +20 degrees > phi > +140 degrees, -40 degrees > psi > +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	46012	\N	biosapiens	sequence	0	SO	beta_turn_left_handed_type_two	beta_turn_left_handed_type_two
SO:0001133	SO:0001135	biosapiens	"A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles of the second and third residues, which are the basis for sub-categorization." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001135	"Left handed type II: A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees > phi > -20 degrees, +80 degrees > psi > +180 degrees. Residue(i+2): +20 degrees > phi > +140 degrees, -40 degrees > psi > +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	490726	biosapiens	biosapiens	sequence	1	SO	beta_turn	beta_turn_left_handed_type_two
SO:0001128	SO:0001133	biosapiens	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	SO:0001135	"Left handed type II: A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees > phi > -20 degrees, +80 degrees > psi > +180 degrees. Residue(i+2): +20 degrees > phi > +140 degrees, -40 degrees > psi > +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1073275	biosapiens	biosapiens	sequence	2	SO	polypeptide_turn_motif	beta_turn_left_handed_type_two
SO:0001078	SO:0001128	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001135	"Left handed type II: A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees > phi > -20 degrees, +80 degrees > psi > +180 degrees. Residue(i+2): +20 degrees > phi > +140 degrees, -40 degrees > psi > +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1904334	biosapiens	biosapiens	sequence	3	SO	polypeptide_secondary_structure	beta_turn_left_handed_type_two
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001135	"Left handed type II: A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees > phi > -20 degrees, +80 degrees > psi > +180 degrees. Residue(i+2): +20 degrees > phi > +140 degrees, -40 degrees > psi > +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928773	biosapiens	biosapiens	sequence	4	SO	polypeptide_structural_region	beta_turn_left_handed_type_two
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001135	"Left handed type II: A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees > phi > -20 degrees, +80 degrees > psi > +180 degrees. Residue(i+2): +20 degrees > phi > +140 degrees, -40 degrees > psi > +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4002008	biosapiens	biosapiens,SOFA	sequence	5	SO	polypeptide_region	beta_turn_left_handed_type_two
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001135	"Left handed type II: A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees > phi > -20 degrees, +80 degrees > psi > +180 degrees. Residue(i+2): +20 degrees > phi > +140 degrees, -40 degrees > psi > +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966416	biosapiens,SOFA	SOFA	sequence	6	SO	polypeptide	beta_turn_left_handed_type_two
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001135	"Left handed type II: A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees > phi > -20 degrees, +80 degrees > psi > +180 degrees. Residue(i+2): +20 degrees > phi > +140 degrees, -40 degrees > psi > +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966417	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	beta_turn_left_handed_type_two
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001135	"Left handed type II: A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees > phi > -20 degrees, +80 degrees > psi > +180 degrees. Residue(i+2): +20 degrees > phi > +140 degrees, -40 degrees > psi > +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5741206	SOFA	SOFA	sequence	7	SO	biological_region	beta_turn_left_handed_type_two
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001135	"Left handed type II: A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees > phi > -20 degrees, +80 degrees > psi > +180 degrees. Residue(i+2): +20 degrees > phi > +140 degrees, -40 degrees > psi > +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6311047	SOFA	SOFA	sequence	8	SO	region	beta_turn_left_handed_type_two
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001135	"Left handed type II: A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees > phi > -20 degrees, +80 degrees > psi > +180 degrees. Residue(i+2): +20 degrees > phi > +140 degrees, -40 degrees > psi > +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6631404	SOFA	SOFA	sequence	9	SO	sequence_feature	beta_turn_left_handed_type_two
SO:0001136	\N	biosapiens	"Right handed type I:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees. Residue(i+2): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001136	"Right handed type I:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees. Residue(i+2): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	46013	\N	biosapiens	sequence	0	SO	beta_turn_right_handed_type_one	beta_turn_right_handed_type_one
SO:0001133	SO:0001136	biosapiens	"A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles of the second and third residues, which are the basis for sub-categorization." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001136	"Right handed type I:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees. Residue(i+2): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	490727	biosapiens	biosapiens	sequence	1	SO	beta_turn	beta_turn_right_handed_type_one
SO:0001128	SO:0001133	biosapiens	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	SO:0001136	"Right handed type I:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees. Residue(i+2): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1073276	biosapiens	biosapiens	sequence	2	SO	polypeptide_turn_motif	beta_turn_right_handed_type_one
SO:0001078	SO:0001128	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001136	"Right handed type I:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees. Residue(i+2): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1904335	biosapiens	biosapiens	sequence	3	SO	polypeptide_secondary_structure	beta_turn_right_handed_type_one
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001136	"Right handed type I:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees. Residue(i+2): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928774	biosapiens	biosapiens	sequence	4	SO	polypeptide_structural_region	beta_turn_right_handed_type_one
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001136	"Right handed type I:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees. Residue(i+2): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4002009	biosapiens	biosapiens,SOFA	sequence	5	SO	polypeptide_region	beta_turn_right_handed_type_one
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001136	"Right handed type I:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees. Residue(i+2): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966418	biosapiens,SOFA	SOFA	sequence	6	SO	polypeptide	beta_turn_right_handed_type_one
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001136	"Right handed type I:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees. Residue(i+2): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966419	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	beta_turn_right_handed_type_one
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001136	"Right handed type I:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees. Residue(i+2): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5741208	SOFA	SOFA	sequence	7	SO	biological_region	beta_turn_right_handed_type_one
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001136	"Right handed type I:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees. Residue(i+2): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6311049	SOFA	SOFA	sequence	8	SO	region	beta_turn_right_handed_type_one
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001136	"Right handed type I:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees. Residue(i+2): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6631405	SOFA	SOFA	sequence	9	SO	sequence_feature	beta_turn_right_handed_type_one
SO:0001137	\N	biosapiens	"Right handed type II:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees < phi < -20 degrees, +80 degrees < psi < +180 degrees. Residue(i+2): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001137	"Right handed type II:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees < phi < -20 degrees, +80 degrees < psi < +180 degrees. Residue(i+2): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	46014	\N	biosapiens	sequence	0	SO	beta_turn_right_handed_type_two	beta_turn_right_handed_type_two
SO:0001133	SO:0001137	biosapiens	"A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles of the second and third residues, which are the basis for sub-categorization." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001137	"Right handed type II:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees < phi < -20 degrees, +80 degrees < psi < +180 degrees. Residue(i+2): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	490728	biosapiens	biosapiens	sequence	1	SO	beta_turn	beta_turn_right_handed_type_two
SO:0001128	SO:0001133	biosapiens	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	SO:0001137	"Right handed type II:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees < phi < -20 degrees, +80 degrees < psi < +180 degrees. Residue(i+2): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1073277	biosapiens	biosapiens	sequence	2	SO	polypeptide_turn_motif	beta_turn_right_handed_type_two
SO:0001078	SO:0001128	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001137	"Right handed type II:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees < phi < -20 degrees, +80 degrees < psi < +180 degrees. Residue(i+2): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1904336	biosapiens	biosapiens	sequence	3	SO	polypeptide_secondary_structure	beta_turn_right_handed_type_two
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001137	"Right handed type II:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees < phi < -20 degrees, +80 degrees < psi < +180 degrees. Residue(i+2): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928775	biosapiens	biosapiens	sequence	4	SO	polypeptide_structural_region	beta_turn_right_handed_type_two
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001137	"Right handed type II:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees < phi < -20 degrees, +80 degrees < psi < +180 degrees. Residue(i+2): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4002010	biosapiens	biosapiens,SOFA	sequence	5	SO	polypeptide_region	beta_turn_right_handed_type_two
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001137	"Right handed type II:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees < phi < -20 degrees, +80 degrees < psi < +180 degrees. Residue(i+2): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966420	biosapiens,SOFA	SOFA	sequence	6	SO	polypeptide	beta_turn_right_handed_type_two
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001137	"Right handed type II:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees < phi < -20 degrees, +80 degrees < psi < +180 degrees. Residue(i+2): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966421	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	beta_turn_right_handed_type_two
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001137	"Right handed type II:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees < phi < -20 degrees, +80 degrees < psi < +180 degrees. Residue(i+2): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5741210	SOFA	SOFA	sequence	7	SO	biological_region	beta_turn_right_handed_type_two
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001137	"Right handed type II:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees < phi < -20 degrees, +80 degrees < psi < +180 degrees. Residue(i+2): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6311051	SOFA	SOFA	sequence	8	SO	region	beta_turn_right_handed_type_two
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001137	"Right handed type II:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees < phi < -20 degrees, +80 degrees < psi < +180 degrees. Residue(i+2): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6631406	SOFA	SOFA	sequence	9	SO	sequence_feature	beta_turn_right_handed_type_two
SO:0001138	\N	biosapiens	"Gamma turns, defined for 3 residues i,( i+1),( i+2) if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001138	"Gamma turns, defined for 3 residues i,( i+1),( i+2) if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	46015	\N	biosapiens	sequence	0	SO	gamma_turn	gamma_turn
SO:0001128	SO:0001138	biosapiens	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	SO:0001138	"Gamma turns, defined for 3 residues i,( i+1),( i+2) if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	490729	biosapiens	biosapiens	sequence	1	SO	polypeptide_turn_motif	gamma_turn
SO:0001078	SO:0001128	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001138	"Gamma turns, defined for 3 residues i,( i+1),( i+2) if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1073278	biosapiens	biosapiens	sequence	2	SO	polypeptide_secondary_structure	gamma_turn
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001138	"Gamma turns, defined for 3 residues i,( i+1),( i+2) if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1904337	biosapiens	biosapiens	sequence	3	SO	polypeptide_structural_region	gamma_turn
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001138	"Gamma turns, defined for 3 residues i,( i+1),( i+2) if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928776	biosapiens	biosapiens,SOFA	sequence	4	SO	polypeptide_region	gamma_turn
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001138	"Gamma turns, defined for 3 residues i,( i+1),( i+2) if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4002011	biosapiens,SOFA	SOFA	sequence	5	SO	polypeptide	gamma_turn
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001138	"Gamma turns, defined for 3 residues i,( i+1),( i+2) if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4002012	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	gamma_turn
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001138	"Gamma turns, defined for 3 residues i,( i+1),( i+2) if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966422	SOFA	SOFA	sequence	6	SO	biological_region	gamma_turn
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001138	"Gamma turns, defined for 3 residues i,( i+1),( i+2) if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5741212	SOFA	SOFA	sequence	7	SO	region	gamma_turn
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001138	"Gamma turns, defined for 3 residues i,( i+1),( i+2) if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6146663	SOFA	SOFA	sequence	8	SO	sequence_feature	gamma_turn
SO:0001139	\N	biosapiens	"Gamma turns, defined for 3 residues i, i+1, i+2 if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees: phi(i+1)=75.0 - psi(i+1)=-64.0." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001139	"Gamma turns, defined for 3 residues i, i+1, i+2 if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees: phi(i+1)=75.0 - psi(i+1)=-64.0." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	46016	\N	biosapiens	sequence	0	SO	gamma_turn_classic	gamma_turn_classic
SO:0001138	SO:0001139	biosapiens	"Gamma turns, defined for 3 residues i,( i+1),( i+2) if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001139	"Gamma turns, defined for 3 residues i, i+1, i+2 if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees: phi(i+1)=75.0 - psi(i+1)=-64.0." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	490730	biosapiens	biosapiens	sequence	1	SO	gamma_turn	gamma_turn_classic
SO:0001128	SO:0001138	biosapiens	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	SO:0001139	"Gamma turns, defined for 3 residues i, i+1, i+2 if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees: phi(i+1)=75.0 - psi(i+1)=-64.0." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1073279	biosapiens	biosapiens	sequence	2	SO	polypeptide_turn_motif	gamma_turn_classic
SO:0001078	SO:0001128	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001139	"Gamma turns, defined for 3 residues i, i+1, i+2 if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees: phi(i+1)=75.0 - psi(i+1)=-64.0." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1904338	biosapiens	biosapiens	sequence	3	SO	polypeptide_secondary_structure	gamma_turn_classic
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001139	"Gamma turns, defined for 3 residues i, i+1, i+2 if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees: phi(i+1)=75.0 - psi(i+1)=-64.0." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928777	biosapiens	biosapiens	sequence	4	SO	polypeptide_structural_region	gamma_turn_classic
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001139	"Gamma turns, defined for 3 residues i, i+1, i+2 if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees: phi(i+1)=75.0 - psi(i+1)=-64.0." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4002013	biosapiens	biosapiens,SOFA	sequence	5	SO	polypeptide_region	gamma_turn_classic
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001139	"Gamma turns, defined for 3 residues i, i+1, i+2 if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees: phi(i+1)=75.0 - psi(i+1)=-64.0." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966424	biosapiens,SOFA	SOFA	sequence	6	SO	polypeptide	gamma_turn_classic
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001139	"Gamma turns, defined for 3 residues i, i+1, i+2 if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees: phi(i+1)=75.0 - psi(i+1)=-64.0." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966425	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	gamma_turn_classic
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001139	"Gamma turns, defined for 3 residues i, i+1, i+2 if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees: phi(i+1)=75.0 - psi(i+1)=-64.0." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5741214	SOFA	SOFA	sequence	7	SO	biological_region	gamma_turn_classic
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001139	"Gamma turns, defined for 3 residues i, i+1, i+2 if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees: phi(i+1)=75.0 - psi(i+1)=-64.0." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6311053	SOFA	SOFA	sequence	8	SO	region	gamma_turn_classic
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001139	"Gamma turns, defined for 3 residues i, i+1, i+2 if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees: phi(i+1)=75.0 - psi(i+1)=-64.0." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6631407	SOFA	SOFA	sequence	9	SO	sequence_feature	gamma_turn_classic
SO:0001140	\N	biosapiens	"Gamma turns, defined for 3 residues i, i+1, i+2 if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees: phi(i+1)=-79.0 - psi(i+1)=69.0." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001140	"Gamma turns, defined for 3 residues i, i+1, i+2 if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees: phi(i+1)=-79.0 - psi(i+1)=69.0." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	46017	\N	biosapiens	sequence	0	SO	gamma_turn_inverse	gamma_turn_inverse
SO:0001138	SO:0001140	biosapiens	"Gamma turns, defined for 3 residues i,( i+1),( i+2) if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001140	"Gamma turns, defined for 3 residues i, i+1, i+2 if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees: phi(i+1)=-79.0 - psi(i+1)=69.0." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	490731	biosapiens	biosapiens	sequence	1	SO	gamma_turn	gamma_turn_inverse
SO:0001128	SO:0001138	biosapiens	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	SO:0001140	"Gamma turns, defined for 3 residues i, i+1, i+2 if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees: phi(i+1)=-79.0 - psi(i+1)=69.0." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1073280	biosapiens	biosapiens	sequence	2	SO	polypeptide_turn_motif	gamma_turn_inverse
SO:0001078	SO:0001128	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001140	"Gamma turns, defined for 3 residues i, i+1, i+2 if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees: phi(i+1)=-79.0 - psi(i+1)=69.0." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1904339	biosapiens	biosapiens	sequence	3	SO	polypeptide_secondary_structure	gamma_turn_inverse
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001140	"Gamma turns, defined for 3 residues i, i+1, i+2 if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees: phi(i+1)=-79.0 - psi(i+1)=69.0." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928778	biosapiens	biosapiens	sequence	4	SO	polypeptide_structural_region	gamma_turn_inverse
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001140	"Gamma turns, defined for 3 residues i, i+1, i+2 if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees: phi(i+1)=-79.0 - psi(i+1)=69.0." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4002014	biosapiens	biosapiens,SOFA	sequence	5	SO	polypeptide_region	gamma_turn_inverse
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001140	"Gamma turns, defined for 3 residues i, i+1, i+2 if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees: phi(i+1)=-79.0 - psi(i+1)=69.0." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966426	biosapiens,SOFA	SOFA	sequence	6	SO	polypeptide	gamma_turn_inverse
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001140	"Gamma turns, defined for 3 residues i, i+1, i+2 if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees: phi(i+1)=-79.0 - psi(i+1)=69.0." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966427	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	gamma_turn_inverse
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001140	"Gamma turns, defined for 3 residues i, i+1, i+2 if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees: phi(i+1)=-79.0 - psi(i+1)=69.0." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5741216	SOFA	SOFA	sequence	7	SO	biological_region	gamma_turn_inverse
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001140	"Gamma turns, defined for 3 residues i, i+1, i+2 if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees: phi(i+1)=-79.0 - psi(i+1)=69.0." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6311055	SOFA	SOFA	sequence	8	SO	region	gamma_turn_inverse
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001140	"Gamma turns, defined for 3 residues i, i+1, i+2 if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees: phi(i+1)=-79.0 - psi(i+1)=69.0." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6631408	SOFA	SOFA	sequence	9	SO	sequence_feature	gamma_turn_inverse
SO:0001141	\N	biosapiens	"A motif of three consecutive residues and one H-bond in which: residue(i) is Serine (S) or Threonine (T), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001141	"A motif of three consecutive residues and one H-bond in which: residue(i) is Serine (S) or Threonine (T), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	46018	\N	biosapiens	sequence	0	SO	serine_threonine_turn	serine_threonine_turn
SO:0001128	SO:0001141	biosapiens	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	SO:0001141	"A motif of three consecutive residues and one H-bond in which: residue(i) is Serine (S) or Threonine (T), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	490732	biosapiens	biosapiens	sequence	1	SO	polypeptide_turn_motif	serine_threonine_turn
SO:0001078	SO:0001128	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001141	"A motif of three consecutive residues and one H-bond in which: residue(i) is Serine (S) or Threonine (T), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1073281	biosapiens	biosapiens	sequence	2	SO	polypeptide_secondary_structure	serine_threonine_turn
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001141	"A motif of three consecutive residues and one H-bond in which: residue(i) is Serine (S) or Threonine (T), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1904340	biosapiens	biosapiens	sequence	3	SO	polypeptide_structural_region	serine_threonine_turn
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001141	"A motif of three consecutive residues and one H-bond in which: residue(i) is Serine (S) or Threonine (T), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928779	biosapiens	biosapiens,SOFA	sequence	4	SO	polypeptide_region	serine_threonine_turn
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001141	"A motif of three consecutive residues and one H-bond in which: residue(i) is Serine (S) or Threonine (T), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4002015	biosapiens,SOFA	SOFA	sequence	5	SO	polypeptide	serine_threonine_turn
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001141	"A motif of three consecutive residues and one H-bond in which: residue(i) is Serine (S) or Threonine (T), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4002016	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	serine_threonine_turn
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001141	"A motif of three consecutive residues and one H-bond in which: residue(i) is Serine (S) or Threonine (T), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966428	SOFA	SOFA	sequence	6	SO	biological_region	serine_threonine_turn
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001141	"A motif of three consecutive residues and one H-bond in which: residue(i) is Serine (S) or Threonine (T), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5741218	SOFA	SOFA	sequence	7	SO	region	serine_threonine_turn
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001141	"A motif of three consecutive residues and one H-bond in which: residue(i) is Serine (S) or Threonine (T), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6146664	SOFA	SOFA	sequence	8	SO	sequence_feature	serine_threonine_turn
SO:0001142	\N	biosapiens	"The peptide twists in an anticlockwise, left handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, -90 degrees psi +120 degrees < +40 degrees, residue(i+1): -140 degrees < phi < -20 degrees, -90 < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001142	"The peptide twists in an anticlockwise, left handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, -90 degrees psi +120 degrees < +40 degrees, residue(i+1): -140 degrees < phi < -20 degrees, -90 < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	46019	\N	biosapiens	sequence	0	SO	st_turn_left_handed_type_one	st_turn_left_handed_type_one
SO:0001141	SO:0001142	biosapiens	"A motif of three consecutive residues and one H-bond in which: residue(i) is Serine (S) or Threonine (T), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001142	"The peptide twists in an anticlockwise, left handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, -90 degrees psi +120 degrees < +40 degrees, residue(i+1): -140 degrees < phi < -20 degrees, -90 < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	490733	biosapiens	biosapiens	sequence	1	SO	serine_threonine_turn	st_turn_left_handed_type_one
SO:0001128	SO:0001141	biosapiens	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	SO:0001142	"The peptide twists in an anticlockwise, left handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, -90 degrees psi +120 degrees < +40 degrees, residue(i+1): -140 degrees < phi < -20 degrees, -90 < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1073282	biosapiens	biosapiens	sequence	2	SO	polypeptide_turn_motif	st_turn_left_handed_type_one
SO:0001078	SO:0001128	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001142	"The peptide twists in an anticlockwise, left handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, -90 degrees psi +120 degrees < +40 degrees, residue(i+1): -140 degrees < phi < -20 degrees, -90 < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1904341	biosapiens	biosapiens	sequence	3	SO	polypeptide_secondary_structure	st_turn_left_handed_type_one
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001142	"The peptide twists in an anticlockwise, left handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, -90 degrees psi +120 degrees < +40 degrees, residue(i+1): -140 degrees < phi < -20 degrees, -90 < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928780	biosapiens	biosapiens	sequence	4	SO	polypeptide_structural_region	st_turn_left_handed_type_one
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001142	"The peptide twists in an anticlockwise, left handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, -90 degrees psi +120 degrees < +40 degrees, residue(i+1): -140 degrees < phi < -20 degrees, -90 < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4002017	biosapiens	biosapiens,SOFA	sequence	5	SO	polypeptide_region	st_turn_left_handed_type_one
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001142	"The peptide twists in an anticlockwise, left handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, -90 degrees psi +120 degrees < +40 degrees, residue(i+1): -140 degrees < phi < -20 degrees, -90 < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966430	biosapiens,SOFA	SOFA	sequence	6	SO	polypeptide	st_turn_left_handed_type_one
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001142	"The peptide twists in an anticlockwise, left handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, -90 degrees psi +120 degrees < +40 degrees, residue(i+1): -140 degrees < phi < -20 degrees, -90 < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966431	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	st_turn_left_handed_type_one
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001142	"The peptide twists in an anticlockwise, left handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, -90 degrees psi +120 degrees < +40 degrees, residue(i+1): -140 degrees < phi < -20 degrees, -90 < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5741220	SOFA	SOFA	sequence	7	SO	biological_region	st_turn_left_handed_type_one
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001142	"The peptide twists in an anticlockwise, left handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, -90 degrees psi +120 degrees < +40 degrees, residue(i+1): -140 degrees < phi < -20 degrees, -90 < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6311057	SOFA	SOFA	sequence	8	SO	region	st_turn_left_handed_type_one
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001142	"The peptide twists in an anticlockwise, left handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, -90 degrees psi +120 degrees < +40 degrees, residue(i+1): -140 degrees < phi < -20 degrees, -90 < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6631409	SOFA	SOFA	sequence	9	SO	sequence_feature	st_turn_left_handed_type_one
SO:0001143	\N	biosapiens	"The peptide twists in an anticlockwise, left handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, +80 degrees psi +120 degrees < +180 degrees, residue(i+1): +20 degrees < phi < +140 degrees, -40 < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001143	"The peptide twists in an anticlockwise, left handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, +80 degrees psi +120 degrees < +180 degrees, residue(i+1): +20 degrees < phi < +140 degrees, -40 < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	46020	\N	biosapiens	sequence	0	SO	st_turn_left_handed_type_two	st_turn_left_handed_type_two
SO:0001141	SO:0001143	biosapiens	"A motif of three consecutive residues and one H-bond in which: residue(i) is Serine (S) or Threonine (T), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001143	"The peptide twists in an anticlockwise, left handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, +80 degrees psi +120 degrees < +180 degrees, residue(i+1): +20 degrees < phi < +140 degrees, -40 < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	490734	biosapiens	biosapiens	sequence	1	SO	serine_threonine_turn	st_turn_left_handed_type_two
SO:0001128	SO:0001141	biosapiens	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	SO:0001143	"The peptide twists in an anticlockwise, left handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, +80 degrees psi +120 degrees < +180 degrees, residue(i+1): +20 degrees < phi < +140 degrees, -40 < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1073283	biosapiens	biosapiens	sequence	2	SO	polypeptide_turn_motif	st_turn_left_handed_type_two
SO:0001078	SO:0001128	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001143	"The peptide twists in an anticlockwise, left handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, +80 degrees psi +120 degrees < +180 degrees, residue(i+1): +20 degrees < phi < +140 degrees, -40 < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1904342	biosapiens	biosapiens	sequence	3	SO	polypeptide_secondary_structure	st_turn_left_handed_type_two
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001143	"The peptide twists in an anticlockwise, left handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, +80 degrees psi +120 degrees < +180 degrees, residue(i+1): +20 degrees < phi < +140 degrees, -40 < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928781	biosapiens	biosapiens	sequence	4	SO	polypeptide_structural_region	st_turn_left_handed_type_two
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001143	"The peptide twists in an anticlockwise, left handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, +80 degrees psi +120 degrees < +180 degrees, residue(i+1): +20 degrees < phi < +140 degrees, -40 < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4002018	biosapiens	biosapiens,SOFA	sequence	5	SO	polypeptide_region	st_turn_left_handed_type_two
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001143	"The peptide twists in an anticlockwise, left handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, +80 degrees psi +120 degrees < +180 degrees, residue(i+1): +20 degrees < phi < +140 degrees, -40 < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966432	biosapiens,SOFA	SOFA	sequence	6	SO	polypeptide	st_turn_left_handed_type_two
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001143	"The peptide twists in an anticlockwise, left handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, +80 degrees psi +120 degrees < +180 degrees, residue(i+1): +20 degrees < phi < +140 degrees, -40 < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966433	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	st_turn_left_handed_type_two
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001143	"The peptide twists in an anticlockwise, left handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, +80 degrees psi +120 degrees < +180 degrees, residue(i+1): +20 degrees < phi < +140 degrees, -40 < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5741222	SOFA	SOFA	sequence	7	SO	biological_region	st_turn_left_handed_type_two
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001143	"The peptide twists in an anticlockwise, left handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, +80 degrees psi +120 degrees < +180 degrees, residue(i+1): +20 degrees < phi < +140 degrees, -40 < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6311059	SOFA	SOFA	sequence	8	SO	region	st_turn_left_handed_type_two
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001143	"The peptide twists in an anticlockwise, left handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, +80 degrees psi +120 degrees < +180 degrees, residue(i+1): +20 degrees < phi < +140 degrees, -40 < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6631410	SOFA	SOFA	sequence	9	SO	sequence_feature	st_turn_left_handed_type_two
SO:0001144	\N	biosapiens	"The peptide twists in an clockwise, right handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, -90 degrees psi +120 degrees < +40 degrees, residue(i+1): -140 degrees < phi < -20 degrees, -90 < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001144	"The peptide twists in an clockwise, right handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, -90 degrees psi +120 degrees < +40 degrees, residue(i+1): -140 degrees < phi < -20 degrees, -90 < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	46021	\N	biosapiens	sequence	0	SO	st_turn_right_handed_type_one	st_turn_right_handed_type_one
SO:0001141	SO:0001144	biosapiens	"A motif of three consecutive residues and one H-bond in which: residue(i) is Serine (S) or Threonine (T), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001144	"The peptide twists in an clockwise, right handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, -90 degrees psi +120 degrees < +40 degrees, residue(i+1): -140 degrees < phi < -20 degrees, -90 < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	490735	biosapiens	biosapiens	sequence	1	SO	serine_threonine_turn	st_turn_right_handed_type_one
SO:0001128	SO:0001141	biosapiens	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	SO:0001144	"The peptide twists in an clockwise, right handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, -90 degrees psi +120 degrees < +40 degrees, residue(i+1): -140 degrees < phi < -20 degrees, -90 < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1073284	biosapiens	biosapiens	sequence	2	SO	polypeptide_turn_motif	st_turn_right_handed_type_one
SO:0001078	SO:0001128	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001144	"The peptide twists in an clockwise, right handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, -90 degrees psi +120 degrees < +40 degrees, residue(i+1): -140 degrees < phi < -20 degrees, -90 < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1904343	biosapiens	biosapiens	sequence	3	SO	polypeptide_secondary_structure	st_turn_right_handed_type_one
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001144	"The peptide twists in an clockwise, right handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, -90 degrees psi +120 degrees < +40 degrees, residue(i+1): -140 degrees < phi < -20 degrees, -90 < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928782	biosapiens	biosapiens	sequence	4	SO	polypeptide_structural_region	st_turn_right_handed_type_one
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001144	"The peptide twists in an clockwise, right handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, -90 degrees psi +120 degrees < +40 degrees, residue(i+1): -140 degrees < phi < -20 degrees, -90 < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4002019	biosapiens	biosapiens,SOFA	sequence	5	SO	polypeptide_region	st_turn_right_handed_type_one
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001144	"The peptide twists in an clockwise, right handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, -90 degrees psi +120 degrees < +40 degrees, residue(i+1): -140 degrees < phi < -20 degrees, -90 < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966434	biosapiens,SOFA	SOFA	sequence	6	SO	polypeptide	st_turn_right_handed_type_one
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001144	"The peptide twists in an clockwise, right handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, -90 degrees psi +120 degrees < +40 degrees, residue(i+1): -140 degrees < phi < -20 degrees, -90 < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966435	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	st_turn_right_handed_type_one
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001144	"The peptide twists in an clockwise, right handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, -90 degrees psi +120 degrees < +40 degrees, residue(i+1): -140 degrees < phi < -20 degrees, -90 < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5741224	SOFA	SOFA	sequence	7	SO	biological_region	st_turn_right_handed_type_one
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001144	"The peptide twists in an clockwise, right handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, -90 degrees psi +120 degrees < +40 degrees, residue(i+1): -140 degrees < phi < -20 degrees, -90 < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6311061	SOFA	SOFA	sequence	8	SO	region	st_turn_right_handed_type_one
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001144	"The peptide twists in an clockwise, right handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, -90 degrees psi +120 degrees < +40 degrees, residue(i+1): -140 degrees < phi < -20 degrees, -90 < psi < +40 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6631411	SOFA	SOFA	sequence	9	SO	sequence_feature	st_turn_right_handed_type_one
SO:0001145	\N	biosapiens	"The peptide twists in an clockwise, right handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, +80 degrees psi +120 degrees < +180 degrees, residue(i+1): +20 degrees < phi < +140 degrees, -40 < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001145	"The peptide twists in an clockwise, right handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, +80 degrees psi +120 degrees < +180 degrees, residue(i+1): +20 degrees < phi < +140 degrees, -40 < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	46022	\N	biosapiens	sequence	0	SO	st_turn_right_handed_type_two	st_turn_right_handed_type_two
SO:0001141	SO:0001145	biosapiens	"A motif of three consecutive residues and one H-bond in which: residue(i) is Serine (S) or Threonine (T), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2)." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001145	"The peptide twists in an clockwise, right handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, +80 degrees psi +120 degrees < +180 degrees, residue(i+1): +20 degrees < phi < +140 degrees, -40 < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	490736	biosapiens	biosapiens	sequence	1	SO	serine_threonine_turn	st_turn_right_handed_type_two
SO:0001128	SO:0001141	biosapiens	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	SO:0001145	"The peptide twists in an clockwise, right handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, +80 degrees psi +120 degrees < +180 degrees, residue(i+1): +20 degrees < phi < +140 degrees, -40 < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1073285	biosapiens	biosapiens	sequence	2	SO	polypeptide_turn_motif	st_turn_right_handed_type_two
SO:0001078	SO:0001128	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001145	"The peptide twists in an clockwise, right handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, +80 degrees psi +120 degrees < +180 degrees, residue(i+1): +20 degrees < phi < +140 degrees, -40 < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1904344	biosapiens	biosapiens	sequence	3	SO	polypeptide_secondary_structure	st_turn_right_handed_type_two
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001145	"The peptide twists in an clockwise, right handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, +80 degrees psi +120 degrees < +180 degrees, residue(i+1): +20 degrees < phi < +140 degrees, -40 < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2928783	biosapiens	biosapiens	sequence	4	SO	polypeptide_structural_region	st_turn_right_handed_type_two
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001145	"The peptide twists in an clockwise, right handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, +80 degrees psi +120 degrees < +180 degrees, residue(i+1): +20 degrees < phi < +140 degrees, -40 < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4002020	biosapiens	biosapiens,SOFA	sequence	5	SO	polypeptide_region	st_turn_right_handed_type_two
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001145	"The peptide twists in an clockwise, right handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, +80 degrees psi +120 degrees < +180 degrees, residue(i+1): +20 degrees < phi < +140 degrees, -40 < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966436	biosapiens,SOFA	SOFA	sequence	6	SO	polypeptide	st_turn_right_handed_type_two
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001145	"The peptide twists in an clockwise, right handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, +80 degrees psi +120 degrees < +180 degrees, residue(i+1): +20 degrees < phi < +140 degrees, -40 < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4966437	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	st_turn_right_handed_type_two
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001145	"The peptide twists in an clockwise, right handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, +80 degrees psi +120 degrees < +180 degrees, residue(i+1): +20 degrees < phi < +140 degrees, -40 < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5741226	SOFA	SOFA	sequence	7	SO	biological_region	st_turn_right_handed_type_two
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001145	"The peptide twists in an clockwise, right handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, +80 degrees psi +120 degrees < +180 degrees, residue(i+1): +20 degrees < phi < +140 degrees, -40 < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6311063	SOFA	SOFA	sequence	8	SO	region	st_turn_right_handed_type_two
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001145	"The peptide twists in an clockwise, right handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, +80 degrees psi +120 degrees < +180 degrees, residue(i+1): +20 degrees < phi < +140 degrees, -40 < psi < +90 degrees." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	6631412	SOFA	SOFA	sequence	9	SO	sequence_feature	st_turn_right_handed_type_two
SO:0001146	\N	biosapiens	"A site of sequence variation (alteration). Alternative sequence due to naturally occurring events such as polymorphisms and alternative splicing or experimental methods such as site directed mutagenesis." [EBIBS:GAR, SO:ke]	SO:0001146	"A site of sequence variation (alteration). Alternative sequence due to naturally occurring events such as polymorphisms and alternative splicing or experimental methods such as site directed mutagenesis." [EBIBS:GAR, SO:ke]	46023	\N	biosapiens	sequence	0	SO	polypeptide_variation_site	polypeptide_variation_site
SO:0000839	SO:0001146	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001146	"A site of sequence variation (alteration). Alternative sequence due to naturally occurring events such as polymorphisms and alternative splicing or experimental methods such as site directed mutagenesis." [EBIBS:GAR, SO:ke]	490737	biosapiens	biosapiens,SOFA	sequence	1	SO	polypeptide_region	polypeptide_variation_site
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001146	"A site of sequence variation (alteration). Alternative sequence due to naturally occurring events such as polymorphisms and alternative splicing or experimental methods such as site directed mutagenesis." [EBIBS:GAR, SO:ke]	1073286	biosapiens,SOFA	SOFA	sequence	2	SO	polypeptide	polypeptide_variation_site
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001146	"A site of sequence variation (alteration). Alternative sequence due to naturally occurring events such as polymorphisms and alternative splicing or experimental methods such as site directed mutagenesis." [EBIBS:GAR, SO:ke]	1073287	biosapiens,SOFA	SOFA	sequence	2	SO	biological_region	polypeptide_variation_site
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001146	"A site of sequence variation (alteration). Alternative sequence due to naturally occurring events such as polymorphisms and alternative splicing or experimental methods such as site directed mutagenesis." [EBIBS:GAR, SO:ke]	1904345	SOFA	SOFA	sequence	3	SO	biological_region	polypeptide_variation_site
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001146	"A site of sequence variation (alteration). Alternative sequence due to naturally occurring events such as polymorphisms and alternative splicing or experimental methods such as site directed mutagenesis." [EBIBS:GAR, SO:ke]	2928784	SOFA	SOFA	sequence	4	SO	region	polypeptide_variation_site
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001146	"A site of sequence variation (alteration). Alternative sequence due to naturally occurring events such as polymorphisms and alternative splicing or experimental methods such as site directed mutagenesis." [EBIBS:GAR, SO:ke]	3173950	SOFA	SOFA	sequence	5	SO	sequence_feature	polypeptide_variation_site
SO:0001147	\N	biosapiens	"Describes the natural sequence variants due to polymorphisms, disease-associated mutations, RNA editing and variations between strains, isolates or cultivars." [EBIBS:GAR, UniProt:curation_manual]	SO:0001147	"Describes the natural sequence variants due to polymorphisms, disease-associated mutations, RNA editing and variations between strains, isolates or cultivars." [EBIBS:GAR, UniProt:curation_manual]	46024	\N	biosapiens	sequence	0	SO	natural_variant_site	natural_variant_site
SO:0001146	SO:0001147	biosapiens	"A site of sequence variation (alteration). Alternative sequence due to naturally occurring events such as polymorphisms and alternative splicing or experimental methods such as site directed mutagenesis." [EBIBS:GAR, SO:ke]	SO:0001147	"Describes the natural sequence variants due to polymorphisms, disease-associated mutations, RNA editing and variations between strains, isolates or cultivars." [EBIBS:GAR, UniProt:curation_manual]	490738	biosapiens	biosapiens	sequence	1	SO	polypeptide_variation_site	natural_variant_site
SO:0000839	SO:0001146	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001147	"Describes the natural sequence variants due to polymorphisms, disease-associated mutations, RNA editing and variations between strains, isolates or cultivars." [EBIBS:GAR, UniProt:curation_manual]	1073288	biosapiens	biosapiens,SOFA	sequence	2	SO	polypeptide_region	natural_variant_site
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001147	"Describes the natural sequence variants due to polymorphisms, disease-associated mutations, RNA editing and variations between strains, isolates or cultivars." [EBIBS:GAR, UniProt:curation_manual]	1904347	biosapiens,SOFA	SOFA	sequence	3	SO	polypeptide	natural_variant_site
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001147	"Describes the natural sequence variants due to polymorphisms, disease-associated mutations, RNA editing and variations between strains, isolates or cultivars." [EBIBS:GAR, UniProt:curation_manual]	1904348	biosapiens,SOFA	SOFA	sequence	3	SO	biological_region	natural_variant_site
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001147	"Describes the natural sequence variants due to polymorphisms, disease-associated mutations, RNA editing and variations between strains, isolates or cultivars." [EBIBS:GAR, UniProt:curation_manual]	2928786	SOFA	SOFA	sequence	4	SO	biological_region	natural_variant_site
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001147	"Describes the natural sequence variants due to polymorphisms, disease-associated mutations, RNA editing and variations between strains, isolates or cultivars." [EBIBS:GAR, UniProt:curation_manual]	4002021	SOFA	SOFA	sequence	5	SO	region	natural_variant_site
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001147	"Describes the natural sequence variants due to polymorphisms, disease-associated mutations, RNA editing and variations between strains, isolates or cultivars." [EBIBS:GAR, UniProt:curation_manual]	4385795	SOFA	SOFA	sequence	6	SO	sequence_feature	natural_variant_site
SO:0001148	\N	biosapiens	"Site which has been experimentally altered." [EBIBS:GAR, UniProt:curation_manual]	SO:0001148	"Site which has been experimentally altered." [EBIBS:GAR, UniProt:curation_manual]	46025	\N	biosapiens	sequence	0	SO	mutated_variant_site	mutated_variant_site
SO:0001146	SO:0001148	biosapiens	"A site of sequence variation (alteration). Alternative sequence due to naturally occurring events such as polymorphisms and alternative splicing or experimental methods such as site directed mutagenesis." [EBIBS:GAR, SO:ke]	SO:0001148	"Site which has been experimentally altered." [EBIBS:GAR, UniProt:curation_manual]	490739	biosapiens	biosapiens	sequence	1	SO	polypeptide_variation_site	mutated_variant_site
SO:0000839	SO:0001146	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001148	"Site which has been experimentally altered." [EBIBS:GAR, UniProt:curation_manual]	1073289	biosapiens	biosapiens,SOFA	sequence	2	SO	polypeptide_region	mutated_variant_site
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001148	"Site which has been experimentally altered." [EBIBS:GAR, UniProt:curation_manual]	1904349	biosapiens,SOFA	SOFA	sequence	3	SO	polypeptide	mutated_variant_site
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001148	"Site which has been experimentally altered." [EBIBS:GAR, UniProt:curation_manual]	1904350	biosapiens,SOFA	SOFA	sequence	3	SO	biological_region	mutated_variant_site
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001148	"Site which has been experimentally altered." [EBIBS:GAR, UniProt:curation_manual]	2928788	SOFA	SOFA	sequence	4	SO	biological_region	mutated_variant_site
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001148	"Site which has been experimentally altered." [EBIBS:GAR, UniProt:curation_manual]	4002023	SOFA	SOFA	sequence	5	SO	region	mutated_variant_site
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001148	"Site which has been experimentally altered." [EBIBS:GAR, UniProt:curation_manual]	4385796	SOFA	SOFA	sequence	6	SO	sequence_feature	mutated_variant_site
SO:0001149	\N	biosapiens	"Description of sequence variants produced by alternative splicing, alternative promoter usage, alternative initiation and ribosomal frameshifting." [EBIBS:GAR, UniProt:curation_manual]	SO:0001149	"Description of sequence variants produced by alternative splicing, alternative promoter usage, alternative initiation and ribosomal frameshifting." [EBIBS:GAR, UniProt:curation_manual]	46026	\N	biosapiens	sequence	0	SO	alternate_sequence_site	alternate_sequence_site
SO:0001146	SO:0001149	biosapiens	"A site of sequence variation (alteration). Alternative sequence due to naturally occurring events such as polymorphisms and alternative splicing or experimental methods such as site directed mutagenesis." [EBIBS:GAR, SO:ke]	SO:0001149	"Description of sequence variants produced by alternative splicing, alternative promoter usage, alternative initiation and ribosomal frameshifting." [EBIBS:GAR, UniProt:curation_manual]	490740	biosapiens	biosapiens	sequence	1	SO	polypeptide_variation_site	alternate_sequence_site
SO:0000839	SO:0001146	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001149	"Description of sequence variants produced by alternative splicing, alternative promoter usage, alternative initiation and ribosomal frameshifting." [EBIBS:GAR, UniProt:curation_manual]	1073290	biosapiens	biosapiens,SOFA	sequence	2	SO	polypeptide_region	alternate_sequence_site
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001149	"Description of sequence variants produced by alternative splicing, alternative promoter usage, alternative initiation and ribosomal frameshifting." [EBIBS:GAR, UniProt:curation_manual]	1904351	biosapiens,SOFA	SOFA	sequence	3	SO	polypeptide	alternate_sequence_site
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001149	"Description of sequence variants produced by alternative splicing, alternative promoter usage, alternative initiation and ribosomal frameshifting." [EBIBS:GAR, UniProt:curation_manual]	1904352	biosapiens,SOFA	SOFA	sequence	3	SO	biological_region	alternate_sequence_site
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001149	"Description of sequence variants produced by alternative splicing, alternative promoter usage, alternative initiation and ribosomal frameshifting." [EBIBS:GAR, UniProt:curation_manual]	2928790	SOFA	SOFA	sequence	4	SO	biological_region	alternate_sequence_site
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001149	"Description of sequence variants produced by alternative splicing, alternative promoter usage, alternative initiation and ribosomal frameshifting." [EBIBS:GAR, UniProt:curation_manual]	4002025	SOFA	SOFA	sequence	5	SO	region	alternate_sequence_site
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001149	"Description of sequence variants produced by alternative splicing, alternative promoter usage, alternative initiation and ribosomal frameshifting." [EBIBS:GAR, UniProt:curation_manual]	4385797	SOFA	SOFA	sequence	6	SO	sequence_feature	alternate_sequence_site
SO:0001150	\N	biosapiens	"A motif of four consecutive peptide resides of type VIa or type VIb and where the i+2 residue is cis-proline." [SO:cb]	SO:0001150	"A motif of four consecutive peptide resides of type VIa or type VIb and where the i+2 residue is cis-proline." [SO:cb]	46027	\N	biosapiens	sequence	0	SO	beta_turn_type_six	beta_turn_type_six
SO:0001133	SO:0001150	biosapiens	"A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles of the second and third residues, which are the basis for sub-categorization." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001150	"A motif of four consecutive peptide resides of type VIa or type VIb and where the i+2 residue is cis-proline." [SO:cb]	490741	biosapiens	biosapiens	sequence	1	SO	beta_turn	beta_turn_type_six
SO:0001128	SO:0001133	biosapiens	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	SO:0001150	"A motif of four consecutive peptide resides of type VIa or type VIb and where the i+2 residue is cis-proline." [SO:cb]	1073291	biosapiens	biosapiens	sequence	2	SO	polypeptide_turn_motif	beta_turn_type_six
SO:0001078	SO:0001128	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001150	"A motif of four consecutive peptide resides of type VIa or type VIb and where the i+2 residue is cis-proline." [SO:cb]	1904353	biosapiens	biosapiens	sequence	3	SO	polypeptide_secondary_structure	beta_turn_type_six
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001150	"A motif of four consecutive peptide resides of type VIa or type VIb and where the i+2 residue is cis-proline." [SO:cb]	2928792	biosapiens	biosapiens	sequence	4	SO	polypeptide_structural_region	beta_turn_type_six
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001150	"A motif of four consecutive peptide resides of type VIa or type VIb and where the i+2 residue is cis-proline." [SO:cb]	4002027	biosapiens	biosapiens,SOFA	sequence	5	SO	polypeptide_region	beta_turn_type_six
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001150	"A motif of four consecutive peptide resides of type VIa or type VIb and where the i+2 residue is cis-proline." [SO:cb]	4966438	biosapiens,SOFA	SOFA	sequence	6	SO	polypeptide	beta_turn_type_six
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001150	"A motif of four consecutive peptide resides of type VIa or type VIb and where the i+2 residue is cis-proline." [SO:cb]	4966439	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	beta_turn_type_six
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001150	"A motif of four consecutive peptide resides of type VIa or type VIb and where the i+2 residue is cis-proline." [SO:cb]	5741228	SOFA	SOFA	sequence	7	SO	biological_region	beta_turn_type_six
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001150	"A motif of four consecutive peptide resides of type VIa or type VIb and where the i+2 residue is cis-proline." [SO:cb]	6311065	SOFA	SOFA	sequence	8	SO	region	beta_turn_type_six
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001150	"A motif of four consecutive peptide resides of type VIa or type VIb and where the i+2 residue is cis-proline." [SO:cb]	6631413	SOFA	SOFA	sequence	9	SO	sequence_feature	beta_turn_type_six
SO:0001151	\N	biosapiens	"A motif of four consecutive peptide residues, of which the i+2 residue is proline, and that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -60 degrees, psi ~ 120 degrees. Residue(i+2): phi ~ -90 degrees, psi ~ 0 degrees." [PMID:2371257, SO:cb]	SO:0001151	"A motif of four consecutive peptide residues, of which the i+2 residue is proline, and that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -60 degrees, psi ~ 120 degrees. Residue(i+2): phi ~ -90 degrees, psi ~ 0 degrees." [PMID:2371257, SO:cb]	46028	\N	biosapiens	sequence	0	SO	beta_turn_type_six_a	beta_turn_type_six_a
SO:0001150	SO:0001151	biosapiens	"A motif of four consecutive peptide resides of type VIa or type VIb and where the i+2 residue is cis-proline." [SO:cb]	SO:0001151	"A motif of four consecutive peptide residues, of which the i+2 residue is proline, and that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -60 degrees, psi ~ 120 degrees. Residue(i+2): phi ~ -90 degrees, psi ~ 0 degrees." [PMID:2371257, SO:cb]	490742	biosapiens	biosapiens	sequence	1	SO	beta_turn_type_six	beta_turn_type_six_a
SO:0001133	SO:0001150	biosapiens	"A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles of the second and third residues, which are the basis for sub-categorization." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001151	"A motif of four consecutive peptide residues, of which the i+2 residue is proline, and that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -60 degrees, psi ~ 120 degrees. Residue(i+2): phi ~ -90 degrees, psi ~ 0 degrees." [PMID:2371257, SO:cb]	1073292	biosapiens	biosapiens	sequence	2	SO	beta_turn	beta_turn_type_six_a
SO:0001128	SO:0001133	biosapiens	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	SO:0001151	"A motif of four consecutive peptide residues, of which the i+2 residue is proline, and that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -60 degrees, psi ~ 120 degrees. Residue(i+2): phi ~ -90 degrees, psi ~ 0 degrees." [PMID:2371257, SO:cb]	1904354	biosapiens	biosapiens	sequence	3	SO	polypeptide_turn_motif	beta_turn_type_six_a
SO:0001078	SO:0001128	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001151	"A motif of four consecutive peptide residues, of which the i+2 residue is proline, and that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -60 degrees, psi ~ 120 degrees. Residue(i+2): phi ~ -90 degrees, psi ~ 0 degrees." [PMID:2371257, SO:cb]	2928793	biosapiens	biosapiens	sequence	4	SO	polypeptide_secondary_structure	beta_turn_type_six_a
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001151	"A motif of four consecutive peptide residues, of which the i+2 residue is proline, and that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -60 degrees, psi ~ 120 degrees. Residue(i+2): phi ~ -90 degrees, psi ~ 0 degrees." [PMID:2371257, SO:cb]	4002028	biosapiens	biosapiens	sequence	5	SO	polypeptide_structural_region	beta_turn_type_six_a
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001151	"A motif of four consecutive peptide residues, of which the i+2 residue is proline, and that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -60 degrees, psi ~ 120 degrees. Residue(i+2): phi ~ -90 degrees, psi ~ 0 degrees." [PMID:2371257, SO:cb]	4966440	biosapiens	biosapiens,SOFA	sequence	6	SO	polypeptide_region	beta_turn_type_six_a
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001151	"A motif of four consecutive peptide residues, of which the i+2 residue is proline, and that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -60 degrees, psi ~ 120 degrees. Residue(i+2): phi ~ -90 degrees, psi ~ 0 degrees." [PMID:2371257, SO:cb]	5741230	biosapiens,SOFA	SOFA	sequence	7	SO	polypeptide	beta_turn_type_six_a
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001151	"A motif of four consecutive peptide residues, of which the i+2 residue is proline, and that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -60 degrees, psi ~ 120 degrees. Residue(i+2): phi ~ -90 degrees, psi ~ 0 degrees." [PMID:2371257, SO:cb]	5741231	biosapiens,SOFA	SOFA	sequence	7	SO	biological_region	beta_turn_type_six_a
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001151	"A motif of four consecutive peptide residues, of which the i+2 residue is proline, and that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -60 degrees, psi ~ 120 degrees. Residue(i+2): phi ~ -90 degrees, psi ~ 0 degrees." [PMID:2371257, SO:cb]	6311067	SOFA	SOFA	sequence	8	SO	biological_region	beta_turn_type_six_a
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001151	"A motif of four consecutive peptide residues, of which the i+2 residue is proline, and that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -60 degrees, psi ~ 120 degrees. Residue(i+2): phi ~ -90 degrees, psi ~ 0 degrees." [PMID:2371257, SO:cb]	6699344	SOFA	SOFA	sequence	9	SO	region	beta_turn_type_six_a
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001151	"A motif of four consecutive peptide residues, of which the i+2 residue is proline, and that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -60 degrees, psi ~ 120 degrees. Residue(i+2): phi ~ -90 degrees, psi ~ 0 degrees." [PMID:2371257, SO:cb]	6925093	SOFA	SOFA	sequence	10	SO	sequence_feature	beta_turn_type_six_a
SO:0001152	\N	biosapiens	"" []	SO:0001152	"" []	46029	\N	biosapiens	sequence	0	SO	beta_turn_type_six_a_one	beta_turn_type_six_a_one
SO:0001151	SO:0001152	biosapiens	"A motif of four consecutive peptide residues, of which the i+2 residue is proline, and that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -60 degrees, psi ~ 120 degrees. Residue(i+2): phi ~ -90 degrees, psi ~ 0 degrees." [PMID:2371257, SO:cb]	SO:0001152	"" []	490743	biosapiens	biosapiens	sequence	1	SO	beta_turn_type_six_a	beta_turn_type_six_a_one
SO:0001150	SO:0001151	biosapiens	"A motif of four consecutive peptide resides of type VIa or type VIb and where the i+2 residue is cis-proline." [SO:cb]	SO:0001152	"" []	1073293	biosapiens	biosapiens	sequence	2	SO	beta_turn_type_six	beta_turn_type_six_a_one
SO:0001133	SO:0001150	biosapiens	"A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles of the second and third residues, which are the basis for sub-categorization." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001152	"" []	1904355	biosapiens	biosapiens	sequence	3	SO	beta_turn	beta_turn_type_six_a_one
SO:0001128	SO:0001133	biosapiens	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	SO:0001152	"" []	2928794	biosapiens	biosapiens	sequence	4	SO	polypeptide_turn_motif	beta_turn_type_six_a_one
SO:0001078	SO:0001128	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001152	"" []	4002029	biosapiens	biosapiens	sequence	5	SO	polypeptide_secondary_structure	beta_turn_type_six_a_one
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001152	"" []	4966441	biosapiens	biosapiens	sequence	6	SO	polypeptide_structural_region	beta_turn_type_six_a_one
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001152	"" []	5741232	biosapiens	biosapiens,SOFA	sequence	7	SO	polypeptide_region	beta_turn_type_six_a_one
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001152	"" []	6311069	biosapiens,SOFA	SOFA	sequence	8	SO	polypeptide	beta_turn_type_six_a_one
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001152	"" []	6311070	biosapiens,SOFA	SOFA	sequence	8	SO	biological_region	beta_turn_type_six_a_one
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001152	"" []	6699346	SOFA	SOFA	sequence	9	SO	biological_region	beta_turn_type_six_a_one
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001152	"" []	6948083	SOFA	SOFA	sequence	10	SO	region	beta_turn_type_six_a_one
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001152	"" []	7098887	SOFA	SOFA	sequence	11	SO	sequence_feature	beta_turn_type_six_a_one
SO:0001153	\N	biosapiens	"" []	SO:0001153	"" []	46030	\N	biosapiens	sequence	0	SO	beta_turn_type_six_a_two	beta_turn_type_six_a_two
SO:0001151	SO:0001153	biosapiens	"A motif of four consecutive peptide residues, of which the i+2 residue is proline, and that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -60 degrees, psi ~ 120 degrees. Residue(i+2): phi ~ -90 degrees, psi ~ 0 degrees." [PMID:2371257, SO:cb]	SO:0001153	"" []	490744	biosapiens	biosapiens	sequence	1	SO	beta_turn_type_six_a	beta_turn_type_six_a_two
SO:0001150	SO:0001151	biosapiens	"A motif of four consecutive peptide resides of type VIa or type VIb and where the i+2 residue is cis-proline." [SO:cb]	SO:0001153	"" []	1073294	biosapiens	biosapiens	sequence	2	SO	beta_turn_type_six	beta_turn_type_six_a_two
SO:0001133	SO:0001150	biosapiens	"A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles of the second and third residues, which are the basis for sub-categorization." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001153	"" []	1904356	biosapiens	biosapiens	sequence	3	SO	beta_turn	beta_turn_type_six_a_two
SO:0001128	SO:0001133	biosapiens	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	SO:0001153	"" []	2928795	biosapiens	biosapiens	sequence	4	SO	polypeptide_turn_motif	beta_turn_type_six_a_two
SO:0001078	SO:0001128	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001153	"" []	4002030	biosapiens	biosapiens	sequence	5	SO	polypeptide_secondary_structure	beta_turn_type_six_a_two
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001153	"" []	4966442	biosapiens	biosapiens	sequence	6	SO	polypeptide_structural_region	beta_turn_type_six_a_two
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001153	"" []	5741233	biosapiens	biosapiens,SOFA	sequence	7	SO	polypeptide_region	beta_turn_type_six_a_two
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001153	"" []	6311071	biosapiens,SOFA	SOFA	sequence	8	SO	polypeptide	beta_turn_type_six_a_two
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001153	"" []	6311072	biosapiens,SOFA	SOFA	sequence	8	SO	biological_region	beta_turn_type_six_a_two
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001153	"" []	6699348	SOFA	SOFA	sequence	9	SO	biological_region	beta_turn_type_six_a_two
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001153	"" []	6948085	SOFA	SOFA	sequence	10	SO	region	beta_turn_type_six_a_two
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001153	"" []	7098888	SOFA	SOFA	sequence	11	SO	sequence_feature	beta_turn_type_six_a_two
SO:0001154	\N	biosapiens	"A motif of four consecutive peptide residues, of which the i+2 residue is proline, and that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -120 degrees, psi ~ 120 degrees. Residue(i+2): phi ~ -60 degrees, psi ~ 0 degrees." [PMID:2371257, SO:cb]	SO:0001154	"A motif of four consecutive peptide residues, of which the i+2 residue is proline, and that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -120 degrees, psi ~ 120 degrees. Residue(i+2): phi ~ -60 degrees, psi ~ 0 degrees." [PMID:2371257, SO:cb]	46031	\N	biosapiens	sequence	0	SO	beta_turn_type_six_b	beta_turn_type_six_b
SO:0001150	SO:0001154	biosapiens	"A motif of four consecutive peptide resides of type VIa or type VIb and where the i+2 residue is cis-proline." [SO:cb]	SO:0001154	"A motif of four consecutive peptide residues, of which the i+2 residue is proline, and that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -120 degrees, psi ~ 120 degrees. Residue(i+2): phi ~ -60 degrees, psi ~ 0 degrees." [PMID:2371257, SO:cb]	490745	biosapiens	biosapiens	sequence	1	SO	beta_turn_type_six	beta_turn_type_six_b
SO:0001133	SO:0001150	biosapiens	"A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles of the second and third residues, which are the basis for sub-categorization." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001154	"A motif of four consecutive peptide residues, of which the i+2 residue is proline, and that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -120 degrees, psi ~ 120 degrees. Residue(i+2): phi ~ -60 degrees, psi ~ 0 degrees." [PMID:2371257, SO:cb]	1073295	biosapiens	biosapiens	sequence	2	SO	beta_turn	beta_turn_type_six_b
SO:0001128	SO:0001133	biosapiens	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	SO:0001154	"A motif of four consecutive peptide residues, of which the i+2 residue is proline, and that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -120 degrees, psi ~ 120 degrees. Residue(i+2): phi ~ -60 degrees, psi ~ 0 degrees." [PMID:2371257, SO:cb]	1904357	biosapiens	biosapiens	sequence	3	SO	polypeptide_turn_motif	beta_turn_type_six_b
SO:0001078	SO:0001128	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001154	"A motif of four consecutive peptide residues, of which the i+2 residue is proline, and that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -120 degrees, psi ~ 120 degrees. Residue(i+2): phi ~ -60 degrees, psi ~ 0 degrees." [PMID:2371257, SO:cb]	2928796	biosapiens	biosapiens	sequence	4	SO	polypeptide_secondary_structure	beta_turn_type_six_b
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001154	"A motif of four consecutive peptide residues, of which the i+2 residue is proline, and that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -120 degrees, psi ~ 120 degrees. Residue(i+2): phi ~ -60 degrees, psi ~ 0 degrees." [PMID:2371257, SO:cb]	4002031	biosapiens	biosapiens	sequence	5	SO	polypeptide_structural_region	beta_turn_type_six_b
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001154	"A motif of four consecutive peptide residues, of which the i+2 residue is proline, and that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -120 degrees, psi ~ 120 degrees. Residue(i+2): phi ~ -60 degrees, psi ~ 0 degrees." [PMID:2371257, SO:cb]	4966443	biosapiens	biosapiens,SOFA	sequence	6	SO	polypeptide_region	beta_turn_type_six_b
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001154	"A motif of four consecutive peptide residues, of which the i+2 residue is proline, and that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -120 degrees, psi ~ 120 degrees. Residue(i+2): phi ~ -60 degrees, psi ~ 0 degrees." [PMID:2371257, SO:cb]	5741234	biosapiens,SOFA	SOFA	sequence	7	SO	polypeptide	beta_turn_type_six_b
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001154	"A motif of four consecutive peptide residues, of which the i+2 residue is proline, and that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -120 degrees, psi ~ 120 degrees. Residue(i+2): phi ~ -60 degrees, psi ~ 0 degrees." [PMID:2371257, SO:cb]	5741235	biosapiens,SOFA	SOFA	sequence	7	SO	biological_region	beta_turn_type_six_b
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001154	"A motif of four consecutive peptide residues, of which the i+2 residue is proline, and that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -120 degrees, psi ~ 120 degrees. Residue(i+2): phi ~ -60 degrees, psi ~ 0 degrees." [PMID:2371257, SO:cb]	6311073	SOFA	SOFA	sequence	8	SO	biological_region	beta_turn_type_six_b
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001154	"A motif of four consecutive peptide residues, of which the i+2 residue is proline, and that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -120 degrees, psi ~ 120 degrees. Residue(i+2): phi ~ -60 degrees, psi ~ 0 degrees." [PMID:2371257, SO:cb]	6699350	SOFA	SOFA	sequence	9	SO	region	beta_turn_type_six_b
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001154	"A motif of four consecutive peptide residues, of which the i+2 residue is proline, and that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -120 degrees, psi ~ 120 degrees. Residue(i+2): phi ~ -60 degrees, psi ~ 0 degrees." [PMID:2371257, SO:cb]	6925094	SOFA	SOFA	sequence	10	SO	sequence_feature	beta_turn_type_six_b
SO:0001155	\N	biosapiens	"A motif of four consecutive peptide residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -60 degrees, psi ~ -30 degrees. Residue(i+2): phi ~ -120 degrees, psi ~ 120 degrees." [PMID:2371257, SO:cb]	SO:0001155	"A motif of four consecutive peptide residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -60 degrees, psi ~ -30 degrees. Residue(i+2): phi ~ -120 degrees, psi ~ 120 degrees." [PMID:2371257, SO:cb]	46032	\N	biosapiens	sequence	0	SO	beta_turn_type_eight	beta_turn_type_eight
SO:0001133	SO:0001155	biosapiens	"A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles of the second and third residues, which are the basis for sub-categorization." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0001155	"A motif of four consecutive peptide residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -60 degrees, psi ~ -30 degrees. Residue(i+2): phi ~ -120 degrees, psi ~ 120 degrees." [PMID:2371257, SO:cb]	490746	biosapiens	biosapiens	sequence	1	SO	beta_turn	beta_turn_type_eight
SO:0001128	SO:0001133	biosapiens	"A reversal in the direction of the backbone of a protein that is stabilized by hydrogen bond between backbone NH and CO groups, involving no more than 4 amino acid residues." [EBIBS:GAR, uniprot:feature_type]	SO:0001155	"A motif of four consecutive peptide residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -60 degrees, psi ~ -30 degrees. Residue(i+2): phi ~ -120 degrees, psi ~ 120 degrees." [PMID:2371257, SO:cb]	1073296	biosapiens	biosapiens	sequence	2	SO	polypeptide_turn_motif	beta_turn_type_eight
SO:0001078	SO:0001128	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001155	"A motif of four consecutive peptide residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -60 degrees, psi ~ -30 degrees. Residue(i+2): phi ~ -120 degrees, psi ~ 120 degrees." [PMID:2371257, SO:cb]	1904358	biosapiens	biosapiens	sequence	3	SO	polypeptide_secondary_structure	beta_turn_type_eight
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001155	"A motif of four consecutive peptide residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -60 degrees, psi ~ -30 degrees. Residue(i+2): phi ~ -120 degrees, psi ~ 120 degrees." [PMID:2371257, SO:cb]	2928797	biosapiens	biosapiens	sequence	4	SO	polypeptide_structural_region	beta_turn_type_eight
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001155	"A motif of four consecutive peptide residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -60 degrees, psi ~ -30 degrees. Residue(i+2): phi ~ -120 degrees, psi ~ 120 degrees." [PMID:2371257, SO:cb]	4002032	biosapiens	biosapiens,SOFA	sequence	5	SO	polypeptide_region	beta_turn_type_eight
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001155	"A motif of four consecutive peptide residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -60 degrees, psi ~ -30 degrees. Residue(i+2): phi ~ -120 degrees, psi ~ 120 degrees." [PMID:2371257, SO:cb]	4966444	biosapiens,SOFA	SOFA	sequence	6	SO	polypeptide	beta_turn_type_eight
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001155	"A motif of four consecutive peptide residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -60 degrees, psi ~ -30 degrees. Residue(i+2): phi ~ -120 degrees, psi ~ 120 degrees." [PMID:2371257, SO:cb]	4966445	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	beta_turn_type_eight
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001155	"A motif of four consecutive peptide residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -60 degrees, psi ~ -30 degrees. Residue(i+2): phi ~ -120 degrees, psi ~ 120 degrees." [PMID:2371257, SO:cb]	5741236	SOFA	SOFA	sequence	7	SO	biological_region	beta_turn_type_eight
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001155	"A motif of four consecutive peptide residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -60 degrees, psi ~ -30 degrees. Residue(i+2): phi ~ -120 degrees, psi ~ 120 degrees." [PMID:2371257, SO:cb]	6311075	SOFA	SOFA	sequence	8	SO	region	beta_turn_type_eight
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001155	"A motif of four consecutive peptide residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -60 degrees, psi ~ -30 degrees. Residue(i+2): phi ~ -120 degrees, psi ~ 120 degrees." [PMID:2371257, SO:cb]	6631414	SOFA	SOFA	sequence	9	SO	sequence_feature	beta_turn_type_eight
SO:0001156	\N	\N	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -10 and -60 relative to the TSS. Consensus sequence is WATCGATW." [PMID:12537576]	SO:0001156	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -10 and -60 relative to the TSS. Consensus sequence is WATCGATW." [PMID:12537576]	46033	\N	\N	sequence	0	SO	DRE_motif	DRE_motif
SO:0000170	SO:0001156	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	SO:0001156	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -10 and -60 relative to the TSS. Consensus sequence is WATCGATW." [PMID:12537576]	490747	\N	\N	sequence	1	SO	RNApol_II_promoter	DRE_motif
SO:0000713	SO:0001156	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001156	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -10 and -60 relative to the TSS. Consensus sequence is WATCGATW." [PMID:12537576]	490748	\N	\N	sequence	1	SO	DNA_motif	DRE_motif
SO:0001203	SO:0000170	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001156	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -10 and -60 relative to the TSS. Consensus sequence is WATCGATW." [PMID:12537576]	1073297	\N	\N	sequence	2	SO	RNA_polymerase_promoter	DRE_motif
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001156	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -10 and -60 relative to the TSS. Consensus sequence is WATCGATW." [PMID:12537576]	1073298	\N	SOFA	sequence	2	SO	nucleotide_motif	DRE_motif
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001156	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -10 and -60 relative to the TSS. Consensus sequence is WATCGATW." [PMID:12537576]	1904359	\N	SOFA	sequence	3	SO	promoter	DRE_motif
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001156	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -10 and -60 relative to the TSS. Consensus sequence is WATCGATW." [PMID:12537576]	1904360	SOFA	SOFA	sequence	3	SO	sequence_motif	DRE_motif
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001156	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -10 and -60 relative to the TSS. Consensus sequence is WATCGATW." [PMID:12537576]	2928798	SOFA	SOFA	sequence	4	SO	transcriptional_cis_regulatory_region	DRE_motif
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001156	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -10 and -60 relative to the TSS. Consensus sequence is WATCGATW." [PMID:12537576]	2928799	SOFA	SOFA	sequence	4	SO	biological_region	DRE_motif
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001156	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -10 and -60 relative to the TSS. Consensus sequence is WATCGATW." [PMID:12537576]	4002033	SOFA	SOFA	sequence	5	SO	transcription_regulatory_region	DRE_motif
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001156	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -10 and -60 relative to the TSS. Consensus sequence is WATCGATW." [PMID:12537576]	6699352	SOFA	SOFA	sequence	9	SO	region	DRE_motif
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001156	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -10 and -60 relative to the TSS. Consensus sequence is WATCGATW." [PMID:12537576]	4966446	SOFA	SOFA	sequence	6	SO	regulatory_region	DRE_motif
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001156	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -10 and -60 relative to the TSS. Consensus sequence is WATCGATW." [PMID:12537576]	6807592	SOFA	SOFA	sequence	10	SO	sequence_feature	DRE_motif
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001156	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -10 and -60 relative to the TSS. Consensus sequence is WATCGATW." [PMID:12537576]	5741238	SOFA	SOFA	sequence	7	SO	gene_member_region	DRE_motif
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001156	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -10 and -60 relative to the TSS. Consensus sequence is WATCGATW." [PMID:12537576]	6311077	SOFA	SOFA	sequence	8	SO	biological_region	DRE_motif
SO:0001157	\N	\N	"A sequence element characteristic of some RNA polymerase II promoters, located immediately upstream of some TATA box elements with respect to the TSS (+1). Consensus sequence is YGGTCACACTR. Marked spatial preference within core promoter; tend to occur near the TSS, although not as tightly as INR (SO:0000014)." [PMID:16827941\\:12537576]	SO:0001157	"A sequence element characteristic of some RNA polymerase II promoters, located immediately upstream of some TATA box elements with respect to the TSS (+1). Consensus sequence is YGGTCACACTR. Marked spatial preference within core promoter; tend to occur near the TSS, although not as tightly as INR (SO:0000014)." [PMID:16827941\\:12537576]	46034	\N	\N	sequence	0	SO	DMv4_motif	DMv4_motif
SO:0001659	SO:0001157	\N	"" []	SO:0001157	"A sequence element characteristic of some RNA polymerase II promoters, located immediately upstream of some TATA box elements with respect to the TSS (+1). Consensus sequence is YGGTCACACTR. Marked spatial preference within core promoter; tend to occur near the TSS, although not as tightly as INR (SO:0000014)." [PMID:16827941\\:12537576]	490749	\N	\N	sequence	1	SO	promoter_element	DMv4_motif
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001157	"A sequence element characteristic of some RNA polymerase II promoters, located immediately upstream of some TATA box elements with respect to the TSS (+1). Consensus sequence is YGGTCACACTR. Marked spatial preference within core promoter; tend to occur near the TSS, although not as tightly as INR (SO:0000014)." [PMID:16827941\\:12537576]	1073299	\N	\N	sequence	2	SO	DNA_motif	DMv4_motif
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001157	"A sequence element characteristic of some RNA polymerase II promoters, located immediately upstream of some TATA box elements with respect to the TSS (+1). Consensus sequence is YGGTCACACTR. Marked spatial preference within core promoter; tend to occur near the TSS, although not as tightly as INR (SO:0000014)." [PMID:16827941\\:12537576]	1904361	\N	SOFA	sequence	3	SO	nucleotide_motif	DMv4_motif
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001157	"A sequence element characteristic of some RNA polymerase II promoters, located immediately upstream of some TATA box elements with respect to the TSS (+1). Consensus sequence is YGGTCACACTR. Marked spatial preference within core promoter; tend to occur near the TSS, although not as tightly as INR (SO:0000014)." [PMID:16827941\\:12537576]	2928800	SOFA	SOFA	sequence	4	SO	sequence_motif	DMv4_motif
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001157	"A sequence element characteristic of some RNA polymerase II promoters, located immediately upstream of some TATA box elements with respect to the TSS (+1). Consensus sequence is YGGTCACACTR. Marked spatial preference within core promoter; tend to occur near the TSS, although not as tightly as INR (SO:0000014)." [PMID:16827941\\:12537576]	4002035	SOFA	SOFA	sequence	5	SO	biological_region	DMv4_motif
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001157	"A sequence element characteristic of some RNA polymerase II promoters, located immediately upstream of some TATA box elements with respect to the TSS (+1). Consensus sequence is YGGTCACACTR. Marked spatial preference within core promoter; tend to occur near the TSS, although not as tightly as INR (SO:0000014)." [PMID:16827941\\:12537576]	4966448	SOFA	SOFA	sequence	6	SO	region	DMv4_motif
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001157	"A sequence element characteristic of some RNA polymerase II promoters, located immediately upstream of some TATA box elements with respect to the TSS (+1). Consensus sequence is YGGTCACACTR. Marked spatial preference within core promoter; tend to occur near the TSS, although not as tightly as INR (SO:0000014)." [PMID:16827941\\:12537576]	5741239	SOFA	SOFA	sequence	7	SO	sequence_feature	DMv4_motif
SO:0001158	\N	\N	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and +1 relative to the TSS. Consensus sequence is AWCAGCTGWT. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015)." [PMID:12537576\\:16827941]	SO:0001158	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and +1 relative to the TSS. Consensus sequence is AWCAGCTGWT. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015)." [PMID:12537576\\:16827941]	46035	\N	\N	sequence	0	SO	E_box_motif	E_box_motif
SO:0000170	SO:0001158	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	SO:0001158	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and +1 relative to the TSS. Consensus sequence is AWCAGCTGWT. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015)." [PMID:12537576\\:16827941]	490750	\N	\N	sequence	1	SO	RNApol_II_promoter	E_box_motif
SO:0000713	SO:0001158	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001158	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and +1 relative to the TSS. Consensus sequence is AWCAGCTGWT. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015)." [PMID:12537576\\:16827941]	490751	\N	\N	sequence	1	SO	DNA_motif	E_box_motif
SO:0001203	SO:0000170	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001158	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and +1 relative to the TSS. Consensus sequence is AWCAGCTGWT. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015)." [PMID:12537576\\:16827941]	1073300	\N	\N	sequence	2	SO	RNA_polymerase_promoter	E_box_motif
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001158	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and +1 relative to the TSS. Consensus sequence is AWCAGCTGWT. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015)." [PMID:12537576\\:16827941]	1073301	\N	SOFA	sequence	2	SO	nucleotide_motif	E_box_motif
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001158	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and +1 relative to the TSS. Consensus sequence is AWCAGCTGWT. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015)." [PMID:12537576\\:16827941]	1904362	\N	SOFA	sequence	3	SO	promoter	E_box_motif
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001158	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and +1 relative to the TSS. Consensus sequence is AWCAGCTGWT. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015)." [PMID:12537576\\:16827941]	1904363	SOFA	SOFA	sequence	3	SO	sequence_motif	E_box_motif
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001158	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and +1 relative to the TSS. Consensus sequence is AWCAGCTGWT. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015)." [PMID:12537576\\:16827941]	2928801	SOFA	SOFA	sequence	4	SO	transcriptional_cis_regulatory_region	E_box_motif
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001158	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and +1 relative to the TSS. Consensus sequence is AWCAGCTGWT. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015)." [PMID:12537576\\:16827941]	2928802	SOFA	SOFA	sequence	4	SO	biological_region	E_box_motif
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001158	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and +1 relative to the TSS. Consensus sequence is AWCAGCTGWT. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015)." [PMID:12537576\\:16827941]	4002036	SOFA	SOFA	sequence	5	SO	transcription_regulatory_region	E_box_motif
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001158	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and +1 relative to the TSS. Consensus sequence is AWCAGCTGWT. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015)." [PMID:12537576\\:16827941]	6699353	SOFA	SOFA	sequence	9	SO	region	E_box_motif
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001158	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and +1 relative to the TSS. Consensus sequence is AWCAGCTGWT. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015)." [PMID:12537576\\:16827941]	4966449	SOFA	SOFA	sequence	6	SO	regulatory_region	E_box_motif
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001158	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and +1 relative to the TSS. Consensus sequence is AWCAGCTGWT. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015)." [PMID:12537576\\:16827941]	6807593	SOFA	SOFA	sequence	10	SO	sequence_feature	E_box_motif
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001158	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and +1 relative to the TSS. Consensus sequence is AWCAGCTGWT. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015)." [PMID:12537576\\:16827941]	5741240	SOFA	SOFA	sequence	7	SO	gene_member_region	E_box_motif
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001158	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and +1 relative to the TSS. Consensus sequence is AWCAGCTGWT. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015)." [PMID:12537576\\:16827941]	6311078	SOFA	SOFA	sequence	8	SO	biological_region	E_box_motif
SO:0001159	\N	\N	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -50 and -10 relative to the TSS. Consensus sequence is KTYRGTATWTTT. Tends to co-occur with DMv4 (SO:0001157) . Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	SO:0001159	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -50 and -10 relative to the TSS. Consensus sequence is KTYRGTATWTTT. Tends to co-occur with DMv4 (SO:0001157) . Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	46036	\N	\N	sequence	0	SO	DMv5_motif	DMv5_motif
SO:0000170	SO:0001159	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	SO:0001159	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -50 and -10 relative to the TSS. Consensus sequence is KTYRGTATWTTT. Tends to co-occur with DMv4 (SO:0001157) . Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	490752	\N	\N	sequence	1	SO	RNApol_II_promoter	DMv5_motif
SO:0001659	SO:0001159	\N	"" []	SO:0001159	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -50 and -10 relative to the TSS. Consensus sequence is KTYRGTATWTTT. Tends to co-occur with DMv4 (SO:0001157) . Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	490753	\N	\N	sequence	1	SO	promoter_element	DMv5_motif
SO:0001203	SO:0000170	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001159	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -50 and -10 relative to the TSS. Consensus sequence is KTYRGTATWTTT. Tends to co-occur with DMv4 (SO:0001157) . Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	1073302	\N	\N	sequence	2	SO	RNA_polymerase_promoter	DMv5_motif
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001159	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -50 and -10 relative to the TSS. Consensus sequence is KTYRGTATWTTT. Tends to co-occur with DMv4 (SO:0001157) . Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	1073303	\N	\N	sequence	2	SO	DNA_motif	DMv5_motif
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001159	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -50 and -10 relative to the TSS. Consensus sequence is KTYRGTATWTTT. Tends to co-occur with DMv4 (SO:0001157) . Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	1904364	\N	SOFA	sequence	3	SO	promoter	DMv5_motif
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001159	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -50 and -10 relative to the TSS. Consensus sequence is KTYRGTATWTTT. Tends to co-occur with DMv4 (SO:0001157) . Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	1904365	\N	SOFA	sequence	3	SO	nucleotide_motif	DMv5_motif
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001159	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -50 and -10 relative to the TSS. Consensus sequence is KTYRGTATWTTT. Tends to co-occur with DMv4 (SO:0001157) . Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	2928803	SOFA	SOFA	sequence	4	SO	transcriptional_cis_regulatory_region	DMv5_motif
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001159	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -50 and -10 relative to the TSS. Consensus sequence is KTYRGTATWTTT. Tends to co-occur with DMv4 (SO:0001157) . Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	2928804	SOFA	SOFA	sequence	4	SO	sequence_motif	DMv5_motif
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001159	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -50 and -10 relative to the TSS. Consensus sequence is KTYRGTATWTTT. Tends to co-occur with DMv4 (SO:0001157) . Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	4002038	SOFA	SOFA	sequence	5	SO	transcription_regulatory_region	DMv5_motif
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001159	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -50 and -10 relative to the TSS. Consensus sequence is KTYRGTATWTTT. Tends to co-occur with DMv4 (SO:0001157) . Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	4002039	SOFA	SOFA	sequence	5	SO	biological_region	DMv5_motif
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001159	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -50 and -10 relative to the TSS. Consensus sequence is KTYRGTATWTTT. Tends to co-occur with DMv4 (SO:0001157) . Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	4966451	SOFA	SOFA	sequence	6	SO	regulatory_region	DMv5_motif
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001159	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -50 and -10 relative to the TSS. Consensus sequence is KTYRGTATWTTT. Tends to co-occur with DMv4 (SO:0001157) . Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	6699354	SOFA	SOFA	sequence	9	SO	region	DMv5_motif
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001159	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -50 and -10 relative to the TSS. Consensus sequence is KTYRGTATWTTT. Tends to co-occur with DMv4 (SO:0001157) . Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	5741241	SOFA	SOFA	sequence	7	SO	gene_member_region	DMv5_motif
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001159	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -50 and -10 relative to the TSS. Consensus sequence is KTYRGTATWTTT. Tends to co-occur with DMv4 (SO:0001157) . Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	6848179	SOFA	SOFA	sequence	10	SO	sequence_feature	DMv5_motif
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001159	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -50 and -10 relative to the TSS. Consensus sequence is KTYRGTATWTTT. Tends to co-occur with DMv4 (SO:0001157) . Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	6311079	SOFA	SOFA	sequence	8	SO	biological_region	DMv5_motif
SO:0001160	\N	\N	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -30 and +15 relative to the TSS. Consensus sequence is KNNCAKCNCTRNY. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015) or MTE (0001162)." [PMID:12537576\\:16827941]	SO:0001160	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -30 and +15 relative to the TSS. Consensus sequence is KNNCAKCNCTRNY. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015) or MTE (0001162)." [PMID:12537576\\:16827941]	46037	\N	\N	sequence	0	SO	DMv3_motif	DMv3_motif
SO:0000170	SO:0001160	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	SO:0001160	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -30 and +15 relative to the TSS. Consensus sequence is KNNCAKCNCTRNY. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015) or MTE (0001162)." [PMID:12537576\\:16827941]	490754	\N	\N	sequence	1	SO	RNApol_II_promoter	DMv3_motif
SO:0001659	SO:0001160	\N	"" []	SO:0001160	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -30 and +15 relative to the TSS. Consensus sequence is KNNCAKCNCTRNY. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015) or MTE (0001162)." [PMID:12537576\\:16827941]	490755	\N	\N	sequence	1	SO	promoter_element	DMv3_motif
SO:0001203	SO:0000170	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001160	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -30 and +15 relative to the TSS. Consensus sequence is KNNCAKCNCTRNY. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015) or MTE (0001162)." [PMID:12537576\\:16827941]	1073304	\N	\N	sequence	2	SO	RNA_polymerase_promoter	DMv3_motif
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001160	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -30 and +15 relative to the TSS. Consensus sequence is KNNCAKCNCTRNY. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015) or MTE (0001162)." [PMID:12537576\\:16827941]	1073305	\N	\N	sequence	2	SO	DNA_motif	DMv3_motif
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001160	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -30 and +15 relative to the TSS. Consensus sequence is KNNCAKCNCTRNY. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015) or MTE (0001162)." [PMID:12537576\\:16827941]	1904366	\N	SOFA	sequence	3	SO	promoter	DMv3_motif
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001160	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -30 and +15 relative to the TSS. Consensus sequence is KNNCAKCNCTRNY. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015) or MTE (0001162)." [PMID:12537576\\:16827941]	1904367	\N	SOFA	sequence	3	SO	nucleotide_motif	DMv3_motif
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001160	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -30 and +15 relative to the TSS. Consensus sequence is KNNCAKCNCTRNY. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015) or MTE (0001162)." [PMID:12537576\\:16827941]	2928805	SOFA	SOFA	sequence	4	SO	transcriptional_cis_regulatory_region	DMv3_motif
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001160	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -30 and +15 relative to the TSS. Consensus sequence is KNNCAKCNCTRNY. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015) or MTE (0001162)." [PMID:12537576\\:16827941]	2928806	SOFA	SOFA	sequence	4	SO	sequence_motif	DMv3_motif
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001160	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -30 and +15 relative to the TSS. Consensus sequence is KNNCAKCNCTRNY. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015) or MTE (0001162)." [PMID:12537576\\:16827941]	4002040	SOFA	SOFA	sequence	5	SO	transcription_regulatory_region	DMv3_motif
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001160	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -30 and +15 relative to the TSS. Consensus sequence is KNNCAKCNCTRNY. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015) or MTE (0001162)." [PMID:12537576\\:16827941]	4002041	SOFA	SOFA	sequence	5	SO	biological_region	DMv3_motif
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001160	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -30 and +15 relative to the TSS. Consensus sequence is KNNCAKCNCTRNY. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015) or MTE (0001162)." [PMID:12537576\\:16827941]	4966453	SOFA	SOFA	sequence	6	SO	regulatory_region	DMv3_motif
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001160	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -30 and +15 relative to the TSS. Consensus sequence is KNNCAKCNCTRNY. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015) or MTE (0001162)." [PMID:12537576\\:16827941]	6699355	SOFA	SOFA	sequence	9	SO	region	DMv3_motif
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001160	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -30 and +15 relative to the TSS. Consensus sequence is KNNCAKCNCTRNY. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015) or MTE (0001162)." [PMID:12537576\\:16827941]	5741243	SOFA	SOFA	sequence	7	SO	gene_member_region	DMv3_motif
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001160	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -30 and +15 relative to the TSS. Consensus sequence is KNNCAKCNCTRNY. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015) or MTE (0001162)." [PMID:12537576\\:16827941]	6848180	SOFA	SOFA	sequence	10	SO	sequence_feature	DMv3_motif
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001160	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -30 and +15 relative to the TSS. Consensus sequence is KNNCAKCNCTRNY. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015) or MTE (0001162)." [PMID:12537576\\:16827941]	6311080	SOFA	SOFA	sequence	8	SO	biological_region	DMv3_motif
SO:0001161	\N	\N	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and -45 relative to the TSS. Consensus sequence is MKSYGGCARCGSYSS. Tends to co-occur with DMv3 (SO:0001160). Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	SO:0001161	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and -45 relative to the TSS. Consensus sequence is MKSYGGCARCGSYSS. Tends to co-occur with DMv3 (SO:0001160). Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	46038	\N	\N	sequence	0	SO	DMv2_motif	DMv2_motif
SO:0000170	SO:0001161	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	SO:0001161	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and -45 relative to the TSS. Consensus sequence is MKSYGGCARCGSYSS. Tends to co-occur with DMv3 (SO:0001160). Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	490756	\N	\N	sequence	1	SO	RNApol_II_promoter	DMv2_motif
SO:0001659	SO:0001161	\N	"" []	SO:0001161	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and -45 relative to the TSS. Consensus sequence is MKSYGGCARCGSYSS. Tends to co-occur with DMv3 (SO:0001160). Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	490757	\N	\N	sequence	1	SO	promoter_element	DMv2_motif
SO:0001203	SO:0000170	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001161	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and -45 relative to the TSS. Consensus sequence is MKSYGGCARCGSYSS. Tends to co-occur with DMv3 (SO:0001160). Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	1073306	\N	\N	sequence	2	SO	RNA_polymerase_promoter	DMv2_motif
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001161	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and -45 relative to the TSS. Consensus sequence is MKSYGGCARCGSYSS. Tends to co-occur with DMv3 (SO:0001160). Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	1073307	\N	\N	sequence	2	SO	DNA_motif	DMv2_motif
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001161	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and -45 relative to the TSS. Consensus sequence is MKSYGGCARCGSYSS. Tends to co-occur with DMv3 (SO:0001160). Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	1904368	\N	SOFA	sequence	3	SO	promoter	DMv2_motif
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001161	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and -45 relative to the TSS. Consensus sequence is MKSYGGCARCGSYSS. Tends to co-occur with DMv3 (SO:0001160). Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	1904369	\N	SOFA	sequence	3	SO	nucleotide_motif	DMv2_motif
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001161	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and -45 relative to the TSS. Consensus sequence is MKSYGGCARCGSYSS. Tends to co-occur with DMv3 (SO:0001160). Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	2928807	SOFA	SOFA	sequence	4	SO	transcriptional_cis_regulatory_region	DMv2_motif
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001161	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and -45 relative to the TSS. Consensus sequence is MKSYGGCARCGSYSS. Tends to co-occur with DMv3 (SO:0001160). Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	2928808	SOFA	SOFA	sequence	4	SO	sequence_motif	DMv2_motif
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001161	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and -45 relative to the TSS. Consensus sequence is MKSYGGCARCGSYSS. Tends to co-occur with DMv3 (SO:0001160). Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	4002042	SOFA	SOFA	sequence	5	SO	transcription_regulatory_region	DMv2_motif
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001161	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and -45 relative to the TSS. Consensus sequence is MKSYGGCARCGSYSS. Tends to co-occur with DMv3 (SO:0001160). Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	4002043	SOFA	SOFA	sequence	5	SO	biological_region	DMv2_motif
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001161	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and -45 relative to the TSS. Consensus sequence is MKSYGGCARCGSYSS. Tends to co-occur with DMv3 (SO:0001160). Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	4966455	SOFA	SOFA	sequence	6	SO	regulatory_region	DMv2_motif
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001161	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and -45 relative to the TSS. Consensus sequence is MKSYGGCARCGSYSS. Tends to co-occur with DMv3 (SO:0001160). Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	6699356	SOFA	SOFA	sequence	9	SO	region	DMv2_motif
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001161	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and -45 relative to the TSS. Consensus sequence is MKSYGGCARCGSYSS. Tends to co-occur with DMv3 (SO:0001160). Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	5741245	SOFA	SOFA	sequence	7	SO	gene_member_region	DMv2_motif
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001161	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and -45 relative to the TSS. Consensus sequence is MKSYGGCARCGSYSS. Tends to co-occur with DMv3 (SO:0001160). Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	6848181	SOFA	SOFA	sequence	10	SO	sequence_feature	DMv2_motif
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001161	"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and -45 relative to the TSS. Consensus sequence is MKSYGGCARCGSYSS. Tends to co-occur with DMv3 (SO:0001160). Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162)." [PMID:12537576\\:16827941]	6311081	SOFA	SOFA	sequence	8	SO	biological_region	DMv2_motif
SO:0001162	\N	\N	"A sequence element characteristic of some RNA polymerase II promoters, usually located between +20 and +30 relative to the TSS. Consensus sequence is CSARCSSAACGS. Tends to co-occur with INR motif (SO:0000014). Tends to not occur with DPE motif (SO:0000015) or DMv5 (SO:0001159)." [PMID:12537576\\:15231738, PMID:16858867]	SO:0001162	"A sequence element characteristic of some RNA polymerase II promoters, usually located between +20 and +30 relative to the TSS. Consensus sequence is CSARCSSAACGS. Tends to co-occur with INR motif (SO:0000014). Tends to not occur with DPE motif (SO:0000015) or DMv5 (SO:0001159)." [PMID:12537576\\:15231738, PMID:16858867]	46039	\N	\N	sequence	0	SO	MTE	MTE
SO:0001660	SO:0001162	\N	"" []	SO:0001162	"A sequence element characteristic of some RNA polymerase II promoters, usually located between +20 and +30 relative to the TSS. Consensus sequence is CSARCSSAACGS. Tends to co-occur with INR motif (SO:0000014). Tends to not occur with DPE motif (SO:0000015) or DMv5 (SO:0001159)." [PMID:12537576\\:15231738, PMID:16858867]	490758	\N	\N	sequence	1	SO	core_promoter_element	MTE
SO:0001669	SO:0001162	\N	"The minimal portion of the promoter required to properly initiate transcription in RNA polymerase II transcribed genes." [PMID:16858867]	SO:0001162	"A sequence element characteristic of some RNA polymerase II promoters, usually located between +20 and +30 relative to the TSS. Consensus sequence is CSARCSSAACGS. Tends to co-occur with INR motif (SO:0000014). Tends to not occur with DPE motif (SO:0000015) or DMv5 (SO:0001159)." [PMID:12537576\\:15231738, PMID:16858867]	490759	\N	\N	sequence	1	SO	RNApol_II_core_promoter	MTE
SO:0001659	SO:0001660	\N	"" []	SO:0001162	"A sequence element characteristic of some RNA polymerase II promoters, usually located between +20 and +30 relative to the TSS. Consensus sequence is CSARCSSAACGS. Tends to co-occur with INR motif (SO:0000014). Tends to not occur with DPE motif (SO:0000015) or DMv5 (SO:0001159)." [PMID:12537576\\:15231738, PMID:16858867]	1073308	\N	\N	sequence	2	SO	promoter_element	MTE
SO:0000170	SO:0001669	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	SO:0001162	"A sequence element characteristic of some RNA polymerase II promoters, usually located between +20 and +30 relative to the TSS. Consensus sequence is CSARCSSAACGS. Tends to co-occur with INR motif (SO:0000014). Tends to not occur with DPE motif (SO:0000015) or DMv5 (SO:0001159)." [PMID:12537576\\:15231738, PMID:16858867]	1073309	\N	\N	sequence	2	SO	RNApol_II_promoter	MTE
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001162	"A sequence element characteristic of some RNA polymerase II promoters, usually located between +20 and +30 relative to the TSS. Consensus sequence is CSARCSSAACGS. Tends to co-occur with INR motif (SO:0000014). Tends to not occur with DPE motif (SO:0000015) or DMv5 (SO:0001159)." [PMID:12537576\\:15231738, PMID:16858867]	1904370	\N	\N	sequence	3	SO	DNA_motif	MTE
SO:0001203	SO:0000170	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001162	"A sequence element characteristic of some RNA polymerase II promoters, usually located between +20 and +30 relative to the TSS. Consensus sequence is CSARCSSAACGS. Tends to co-occur with INR motif (SO:0000014). Tends to not occur with DPE motif (SO:0000015) or DMv5 (SO:0001159)." [PMID:12537576\\:15231738, PMID:16858867]	1904371	\N	\N	sequence	3	SO	RNA_polymerase_promoter	MTE
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001162	"A sequence element characteristic of some RNA polymerase II promoters, usually located between +20 and +30 relative to the TSS. Consensus sequence is CSARCSSAACGS. Tends to co-occur with INR motif (SO:0000014). Tends to not occur with DPE motif (SO:0000015) or DMv5 (SO:0001159)." [PMID:12537576\\:15231738, PMID:16858867]	2928809	\N	SOFA	sequence	4	SO	nucleotide_motif	MTE
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001162	"A sequence element characteristic of some RNA polymerase II promoters, usually located between +20 and +30 relative to the TSS. Consensus sequence is CSARCSSAACGS. Tends to co-occur with INR motif (SO:0000014). Tends to not occur with DPE motif (SO:0000015) or DMv5 (SO:0001159)." [PMID:12537576\\:15231738, PMID:16858867]	2928810	\N	SOFA	sequence	4	SO	promoter	MTE
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001162	"A sequence element characteristic of some RNA polymerase II promoters, usually located between +20 and +30 relative to the TSS. Consensus sequence is CSARCSSAACGS. Tends to co-occur with INR motif (SO:0000014). Tends to not occur with DPE motif (SO:0000015) or DMv5 (SO:0001159)." [PMID:12537576\\:15231738, PMID:16858867]	4002044	SOFA	SOFA	sequence	5	SO	sequence_motif	MTE
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001162	"A sequence element characteristic of some RNA polymerase II promoters, usually located between +20 and +30 relative to the TSS. Consensus sequence is CSARCSSAACGS. Tends to co-occur with INR motif (SO:0000014). Tends to not occur with DPE motif (SO:0000015) or DMv5 (SO:0001159)." [PMID:12537576\\:15231738, PMID:16858867]	4002045	SOFA	SOFA	sequence	5	SO	transcriptional_cis_regulatory_region	MTE
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001162	"A sequence element characteristic of some RNA polymerase II promoters, usually located between +20 and +30 relative to the TSS. Consensus sequence is CSARCSSAACGS. Tends to co-occur with INR motif (SO:0000014). Tends to not occur with DPE motif (SO:0000015) or DMv5 (SO:0001159)." [PMID:12537576\\:15231738, PMID:16858867]	4966457	SOFA	SOFA	sequence	6	SO	biological_region	MTE
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001162	"A sequence element characteristic of some RNA polymerase II promoters, usually located between +20 and +30 relative to the TSS. Consensus sequence is CSARCSSAACGS. Tends to co-occur with INR motif (SO:0000014). Tends to not occur with DPE motif (SO:0000015) or DMv5 (SO:0001159)." [PMID:12537576\\:15231738, PMID:16858867]	4966458	SOFA	SOFA	sequence	6	SO	transcription_regulatory_region	MTE
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001162	"A sequence element characteristic of some RNA polymerase II promoters, usually located between +20 and +30 relative to the TSS. Consensus sequence is CSARCSSAACGS. Tends to co-occur with INR motif (SO:0000014). Tends to not occur with DPE motif (SO:0000015) or DMv5 (SO:0001159)." [PMID:12537576\\:15231738, PMID:16858867]	6948087	SOFA	SOFA	sequence	10	SO	region	MTE
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001162	"A sequence element characteristic of some RNA polymerase II promoters, usually located between +20 and +30 relative to the TSS. Consensus sequence is CSARCSSAACGS. Tends to co-occur with INR motif (SO:0000014). Tends to not occur with DPE motif (SO:0000015) or DMv5 (SO:0001159)." [PMID:12537576\\:15231738, PMID:16858867]	5741248	SOFA	SOFA	sequence	7	SO	regulatory_region	MTE
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001162	"A sequence element characteristic of some RNA polymerase II promoters, usually located between +20 and +30 relative to the TSS. Consensus sequence is CSARCSSAACGS. Tends to co-occur with INR motif (SO:0000014). Tends to not occur with DPE motif (SO:0000015) or DMv5 (SO:0001159)." [PMID:12537576\\:15231738, PMID:16858867]	7068346	SOFA	SOFA	sequence	11	SO	sequence_feature	MTE
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001162	"A sequence element characteristic of some RNA polymerase II promoters, usually located between +20 and +30 relative to the TSS. Consensus sequence is CSARCSSAACGS. Tends to co-occur with INR motif (SO:0000014). Tends to not occur with DPE motif (SO:0000015) or DMv5 (SO:0001159)." [PMID:12537576\\:15231738, PMID:16858867]	6311083	SOFA	SOFA	sequence	8	SO	gene_member_region	MTE
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001162	"A sequence element characteristic of some RNA polymerase II promoters, usually located between +20 and +30 relative to the TSS. Consensus sequence is CSARCSSAACGS. Tends to co-occur with INR motif (SO:0000014). Tends to not occur with DPE motif (SO:0000015) or DMv5 (SO:0001159)." [PMID:12537576\\:15231738, PMID:16858867]	6699357	SOFA	SOFA	sequence	9	SO	biological_region	MTE
SO:0001163	\N	\N	"A promoter motif with consensus sequence TCATTCG." [PMID:16827941]	SO:0001163	"A promoter motif with consensus sequence TCATTCG." [PMID:16827941]	46040	\N	\N	sequence	0	SO	INR1_motif	INR1_motif
SO:0000170	SO:0001163	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	SO:0001163	"A promoter motif with consensus sequence TCATTCG." [PMID:16827941]	490760	\N	\N	sequence	1	SO	RNApol_II_promoter	INR1_motif
SO:0000713	SO:0001163	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001163	"A promoter motif with consensus sequence TCATTCG." [PMID:16827941]	490761	\N	\N	sequence	1	SO	DNA_motif	INR1_motif
SO:0001203	SO:0000170	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001163	"A promoter motif with consensus sequence TCATTCG." [PMID:16827941]	1073310	\N	\N	sequence	2	SO	RNA_polymerase_promoter	INR1_motif
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001163	"A promoter motif with consensus sequence TCATTCG." [PMID:16827941]	1073311	\N	SOFA	sequence	2	SO	nucleotide_motif	INR1_motif
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001163	"A promoter motif with consensus sequence TCATTCG." [PMID:16827941]	1904372	\N	SOFA	sequence	3	SO	promoter	INR1_motif
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001163	"A promoter motif with consensus sequence TCATTCG." [PMID:16827941]	1904373	SOFA	SOFA	sequence	3	SO	sequence_motif	INR1_motif
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001163	"A promoter motif with consensus sequence TCATTCG." [PMID:16827941]	2928811	SOFA	SOFA	sequence	4	SO	transcriptional_cis_regulatory_region	INR1_motif
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001163	"A promoter motif with consensus sequence TCATTCG." [PMID:16827941]	2928812	SOFA	SOFA	sequence	4	SO	biological_region	INR1_motif
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001163	"A promoter motif with consensus sequence TCATTCG." [PMID:16827941]	4002046	SOFA	SOFA	sequence	5	SO	transcription_regulatory_region	INR1_motif
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001163	"A promoter motif with consensus sequence TCATTCG." [PMID:16827941]	6699358	SOFA	SOFA	sequence	9	SO	region	INR1_motif
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001163	"A promoter motif with consensus sequence TCATTCG." [PMID:16827941]	4966459	SOFA	SOFA	sequence	6	SO	regulatory_region	INR1_motif
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001163	"A promoter motif with consensus sequence TCATTCG." [PMID:16827941]	6807594	SOFA	SOFA	sequence	10	SO	sequence_feature	INR1_motif
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001163	"A promoter motif with consensus sequence TCATTCG." [PMID:16827941]	5741249	SOFA	SOFA	sequence	7	SO	gene_member_region	INR1_motif
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001163	"A promoter motif with consensus sequence TCATTCG." [PMID:16827941]	6311084	SOFA	SOFA	sequence	8	SO	biological_region	INR1_motif
SO:0001164	\N	\N	"A promoter motif with consensus sequence CGGACGT." [PMID:16827941]	SO:0001164	"A promoter motif with consensus sequence CGGACGT." [PMID:16827941]	46041	\N	\N	sequence	0	SO	DPE1_motif	DPE1_motif
SO:0000170	SO:0001164	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	SO:0001164	"A promoter motif with consensus sequence CGGACGT." [PMID:16827941]	490762	\N	\N	sequence	1	SO	RNApol_II_promoter	DPE1_motif
SO:0001659	SO:0001164	\N	"" []	SO:0001164	"A promoter motif with consensus sequence CGGACGT." [PMID:16827941]	490763	\N	\N	sequence	1	SO	promoter_element	DPE1_motif
SO:0001203	SO:0000170	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001164	"A promoter motif with consensus sequence CGGACGT." [PMID:16827941]	1073312	\N	\N	sequence	2	SO	RNA_polymerase_promoter	DPE1_motif
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001164	"A promoter motif with consensus sequence CGGACGT." [PMID:16827941]	1073313	\N	\N	sequence	2	SO	DNA_motif	DPE1_motif
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001164	"A promoter motif with consensus sequence CGGACGT." [PMID:16827941]	1904374	\N	SOFA	sequence	3	SO	promoter	DPE1_motif
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001164	"A promoter motif with consensus sequence CGGACGT." [PMID:16827941]	1904375	\N	SOFA	sequence	3	SO	nucleotide_motif	DPE1_motif
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001164	"A promoter motif with consensus sequence CGGACGT." [PMID:16827941]	2928813	SOFA	SOFA	sequence	4	SO	transcriptional_cis_regulatory_region	DPE1_motif
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001164	"A promoter motif with consensus sequence CGGACGT." [PMID:16827941]	2928814	SOFA	SOFA	sequence	4	SO	sequence_motif	DPE1_motif
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001164	"A promoter motif with consensus sequence CGGACGT." [PMID:16827941]	4002048	SOFA	SOFA	sequence	5	SO	transcription_regulatory_region	DPE1_motif
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001164	"A promoter motif with consensus sequence CGGACGT." [PMID:16827941]	4002049	SOFA	SOFA	sequence	5	SO	biological_region	DPE1_motif
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001164	"A promoter motif with consensus sequence CGGACGT." [PMID:16827941]	4966461	SOFA	SOFA	sequence	6	SO	regulatory_region	DPE1_motif
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001164	"A promoter motif with consensus sequence CGGACGT." [PMID:16827941]	6699359	SOFA	SOFA	sequence	9	SO	region	DPE1_motif
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001164	"A promoter motif with consensus sequence CGGACGT." [PMID:16827941]	5741250	SOFA	SOFA	sequence	7	SO	gene_member_region	DPE1_motif
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001164	"A promoter motif with consensus sequence CGGACGT." [PMID:16827941]	6848182	SOFA	SOFA	sequence	10	SO	sequence_feature	DPE1_motif
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001164	"A promoter motif with consensus sequence CGGACGT." [PMID:16827941]	6311085	SOFA	SOFA	sequence	8	SO	biological_region	DPE1_motif
SO:0001165	\N	\N	"A promoter motif with consensus sequence CARCCCT." [PMID:16827941]	SO:0001165	"A promoter motif with consensus sequence CARCCCT." [PMID:16827941]	46042	\N	\N	sequence	0	SO	DMv1_motif	DMv1_motif
SO:0000170	SO:0001165	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	SO:0001165	"A promoter motif with consensus sequence CARCCCT." [PMID:16827941]	490764	\N	\N	sequence	1	SO	RNApol_II_promoter	DMv1_motif
SO:0001659	SO:0001165	\N	"" []	SO:0001165	"A promoter motif with consensus sequence CARCCCT." [PMID:16827941]	490765	\N	\N	sequence	1	SO	promoter_element	DMv1_motif
SO:0001203	SO:0000170	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001165	"A promoter motif with consensus sequence CARCCCT." [PMID:16827941]	1073314	\N	\N	sequence	2	SO	RNA_polymerase_promoter	DMv1_motif
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001165	"A promoter motif with consensus sequence CARCCCT." [PMID:16827941]	1073315	\N	\N	sequence	2	SO	DNA_motif	DMv1_motif
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001165	"A promoter motif with consensus sequence CARCCCT." [PMID:16827941]	1904376	\N	SOFA	sequence	3	SO	promoter	DMv1_motif
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001165	"A promoter motif with consensus sequence CARCCCT." [PMID:16827941]	1904377	\N	SOFA	sequence	3	SO	nucleotide_motif	DMv1_motif
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001165	"A promoter motif with consensus sequence CARCCCT." [PMID:16827941]	2928815	SOFA	SOFA	sequence	4	SO	transcriptional_cis_regulatory_region	DMv1_motif
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001165	"A promoter motif with consensus sequence CARCCCT." [PMID:16827941]	2928816	SOFA	SOFA	sequence	4	SO	sequence_motif	DMv1_motif
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001165	"A promoter motif with consensus sequence CARCCCT." [PMID:16827941]	4002050	SOFA	SOFA	sequence	5	SO	transcription_regulatory_region	DMv1_motif
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001165	"A promoter motif with consensus sequence CARCCCT." [PMID:16827941]	4002051	SOFA	SOFA	sequence	5	SO	biological_region	DMv1_motif
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001165	"A promoter motif with consensus sequence CARCCCT." [PMID:16827941]	4966463	SOFA	SOFA	sequence	6	SO	regulatory_region	DMv1_motif
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001165	"A promoter motif with consensus sequence CARCCCT." [PMID:16827941]	6699360	SOFA	SOFA	sequence	9	SO	region	DMv1_motif
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001165	"A promoter motif with consensus sequence CARCCCT." [PMID:16827941]	5741252	SOFA	SOFA	sequence	7	SO	gene_member_region	DMv1_motif
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001165	"A promoter motif with consensus sequence CARCCCT." [PMID:16827941]	6848183	SOFA	SOFA	sequence	10	SO	sequence_feature	DMv1_motif
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001165	"A promoter motif with consensus sequence CARCCCT." [PMID:16827941]	6311086	SOFA	SOFA	sequence	8	SO	biological_region	DMv1_motif
SO:0001166	\N	\N	"A non directional promoter motif with consensus sequence GAGAGCG." [PMID:16827941]	SO:0001166	"A non directional promoter motif with consensus sequence GAGAGCG." [PMID:16827941]	46043	\N	\N	sequence	0	SO	GAGA_motif	GAGA_motif
SO:0000170	SO:0001166	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	SO:0001166	"A non directional promoter motif with consensus sequence GAGAGCG." [PMID:16827941]	490766	\N	\N	sequence	1	SO	RNApol_II_promoter	GAGA_motif
SO:0000713	SO:0001166	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001166	"A non directional promoter motif with consensus sequence GAGAGCG." [PMID:16827941]	490767	\N	\N	sequence	1	SO	DNA_motif	GAGA_motif
SO:0001203	SO:0000170	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001166	"A non directional promoter motif with consensus sequence GAGAGCG." [PMID:16827941]	1073316	\N	\N	sequence	2	SO	RNA_polymerase_promoter	GAGA_motif
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001166	"A non directional promoter motif with consensus sequence GAGAGCG." [PMID:16827941]	1073317	\N	SOFA	sequence	2	SO	nucleotide_motif	GAGA_motif
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001166	"A non directional promoter motif with consensus sequence GAGAGCG." [PMID:16827941]	1904378	\N	SOFA	sequence	3	SO	promoter	GAGA_motif
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001166	"A non directional promoter motif with consensus sequence GAGAGCG." [PMID:16827941]	1904379	SOFA	SOFA	sequence	3	SO	sequence_motif	GAGA_motif
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001166	"A non directional promoter motif with consensus sequence GAGAGCG." [PMID:16827941]	2928817	SOFA	SOFA	sequence	4	SO	transcriptional_cis_regulatory_region	GAGA_motif
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001166	"A non directional promoter motif with consensus sequence GAGAGCG." [PMID:16827941]	2928818	SOFA	SOFA	sequence	4	SO	biological_region	GAGA_motif
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001166	"A non directional promoter motif with consensus sequence GAGAGCG." [PMID:16827941]	4002052	SOFA	SOFA	sequence	5	SO	transcription_regulatory_region	GAGA_motif
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001166	"A non directional promoter motif with consensus sequence GAGAGCG." [PMID:16827941]	6699361	SOFA	SOFA	sequence	9	SO	region	GAGA_motif
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001166	"A non directional promoter motif with consensus sequence GAGAGCG." [PMID:16827941]	4966465	SOFA	SOFA	sequence	6	SO	regulatory_region	GAGA_motif
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001166	"A non directional promoter motif with consensus sequence GAGAGCG." [PMID:16827941]	6807595	SOFA	SOFA	sequence	10	SO	sequence_feature	GAGA_motif
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001166	"A non directional promoter motif with consensus sequence GAGAGCG." [PMID:16827941]	5741254	SOFA	SOFA	sequence	7	SO	gene_member_region	GAGA_motif
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001166	"A non directional promoter motif with consensus sequence GAGAGCG." [PMID:16827941]	6311087	SOFA	SOFA	sequence	8	SO	biological_region	GAGA_motif
SO:0001167	\N	\N	"A non directional promoter motif with consensus CGMYGYCR." [PMID:16827941]	SO:0001167	"A non directional promoter motif with consensus CGMYGYCR." [PMID:16827941]	46044	\N	\N	sequence	0	SO	NDM2_motif	NDM2_motif
SO:0000170	SO:0001167	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	SO:0001167	"A non directional promoter motif with consensus CGMYGYCR." [PMID:16827941]	490768	\N	\N	sequence	1	SO	RNApol_II_promoter	NDM2_motif
SO:0001659	SO:0001167	\N	"" []	SO:0001167	"A non directional promoter motif with consensus CGMYGYCR." [PMID:16827941]	490769	\N	\N	sequence	1	SO	promoter_element	NDM2_motif
SO:0001203	SO:0000170	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001167	"A non directional promoter motif with consensus CGMYGYCR." [PMID:16827941]	1073318	\N	\N	sequence	2	SO	RNA_polymerase_promoter	NDM2_motif
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001167	"A non directional promoter motif with consensus CGMYGYCR." [PMID:16827941]	1073319	\N	\N	sequence	2	SO	DNA_motif	NDM2_motif
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001167	"A non directional promoter motif with consensus CGMYGYCR." [PMID:16827941]	1904380	\N	SOFA	sequence	3	SO	promoter	NDM2_motif
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001167	"A non directional promoter motif with consensus CGMYGYCR." [PMID:16827941]	1904381	\N	SOFA	sequence	3	SO	nucleotide_motif	NDM2_motif
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001167	"A non directional promoter motif with consensus CGMYGYCR." [PMID:16827941]	2928819	SOFA	SOFA	sequence	4	SO	transcriptional_cis_regulatory_region	NDM2_motif
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001167	"A non directional promoter motif with consensus CGMYGYCR." [PMID:16827941]	2928820	SOFA	SOFA	sequence	4	SO	sequence_motif	NDM2_motif
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001167	"A non directional promoter motif with consensus CGMYGYCR." [PMID:16827941]	4002054	SOFA	SOFA	sequence	5	SO	transcription_regulatory_region	NDM2_motif
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001167	"A non directional promoter motif with consensus CGMYGYCR." [PMID:16827941]	4002055	SOFA	SOFA	sequence	5	SO	biological_region	NDM2_motif
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001167	"A non directional promoter motif with consensus CGMYGYCR." [PMID:16827941]	4966467	SOFA	SOFA	sequence	6	SO	regulatory_region	NDM2_motif
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001167	"A non directional promoter motif with consensus CGMYGYCR." [PMID:16827941]	6699362	SOFA	SOFA	sequence	9	SO	region	NDM2_motif
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001167	"A non directional promoter motif with consensus CGMYGYCR." [PMID:16827941]	5741255	SOFA	SOFA	sequence	7	SO	gene_member_region	NDM2_motif
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001167	"A non directional promoter motif with consensus CGMYGYCR." [PMID:16827941]	6848184	SOFA	SOFA	sequence	10	SO	sequence_feature	NDM2_motif
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001167	"A non directional promoter motif with consensus CGMYGYCR." [PMID:16827941]	6311088	SOFA	SOFA	sequence	8	SO	biological_region	NDM2_motif
SO:0001168	\N	\N	"A non directional promoter motif with consensus sequence GAAAGCT." [PMID:16827941]	SO:0001168	"A non directional promoter motif with consensus sequence GAAAGCT." [PMID:16827941]	46045	\N	\N	sequence	0	SO	NDM3_motif	NDM3_motif
SO:0000170	SO:0001168	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	SO:0001168	"A non directional promoter motif with consensus sequence GAAAGCT." [PMID:16827941]	490770	\N	\N	sequence	1	SO	RNApol_II_promoter	NDM3_motif
SO:0001659	SO:0001168	\N	"" []	SO:0001168	"A non directional promoter motif with consensus sequence GAAAGCT." [PMID:16827941]	490771	\N	\N	sequence	1	SO	promoter_element	NDM3_motif
SO:0001203	SO:0000170	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001168	"A non directional promoter motif with consensus sequence GAAAGCT." [PMID:16827941]	1073320	\N	\N	sequence	2	SO	RNA_polymerase_promoter	NDM3_motif
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001168	"A non directional promoter motif with consensus sequence GAAAGCT." [PMID:16827941]	1073321	\N	\N	sequence	2	SO	DNA_motif	NDM3_motif
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001168	"A non directional promoter motif with consensus sequence GAAAGCT." [PMID:16827941]	1904382	\N	SOFA	sequence	3	SO	promoter	NDM3_motif
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001168	"A non directional promoter motif with consensus sequence GAAAGCT." [PMID:16827941]	1904383	\N	SOFA	sequence	3	SO	nucleotide_motif	NDM3_motif
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001168	"A non directional promoter motif with consensus sequence GAAAGCT." [PMID:16827941]	2928821	SOFA	SOFA	sequence	4	SO	transcriptional_cis_regulatory_region	NDM3_motif
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001168	"A non directional promoter motif with consensus sequence GAAAGCT." [PMID:16827941]	2928822	SOFA	SOFA	sequence	4	SO	sequence_motif	NDM3_motif
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001168	"A non directional promoter motif with consensus sequence GAAAGCT." [PMID:16827941]	4002056	SOFA	SOFA	sequence	5	SO	transcription_regulatory_region	NDM3_motif
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001168	"A non directional promoter motif with consensus sequence GAAAGCT." [PMID:16827941]	4002057	SOFA	SOFA	sequence	5	SO	biological_region	NDM3_motif
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001168	"A non directional promoter motif with consensus sequence GAAAGCT." [PMID:16827941]	4966469	SOFA	SOFA	sequence	6	SO	regulatory_region	NDM3_motif
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001168	"A non directional promoter motif with consensus sequence GAAAGCT." [PMID:16827941]	6699363	SOFA	SOFA	sequence	9	SO	region	NDM3_motif
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001168	"A non directional promoter motif with consensus sequence GAAAGCT." [PMID:16827941]	5741257	SOFA	SOFA	sequence	7	SO	gene_member_region	NDM3_motif
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001168	"A non directional promoter motif with consensus sequence GAAAGCT." [PMID:16827941]	6848185	SOFA	SOFA	sequence	10	SO	sequence_feature	NDM3_motif
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001168	"A non directional promoter motif with consensus sequence GAAAGCT." [PMID:16827941]	6311089	SOFA	SOFA	sequence	8	SO	biological_region	NDM3_motif
SO:0001169	\N	\N	"A ds_RNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as double stranded RNA." [SO:ke]	SO:0001169	"A ds_RNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as double stranded RNA." [SO:ke]	46046	\N	\N	sequence	0	SO	ds_RNA_viral_sequence	ds_RNA_viral_sequence
SO:0001041	SO:0001169	\N	"The region of nucleotide sequence of a virus, a submicroscopic particle that replicates by infecting a host cell." [SO:ke]	SO:0001169	"A ds_RNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as double stranded RNA." [SO:ke]	490772	\N	\N	sequence	1	SO	viral_sequence	ds_RNA_viral_sequence
SO:0001038	SO:0001041	\N	"An MGE that is not integrated into the host chromosome." [SO:ke]	SO:0001169	"A ds_RNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as double stranded RNA." [SO:ke]	1073322	\N	\N	sequence	2	SO	extrachromosomal_mobile_genetic_element	ds_RNA_viral_sequence
SO:0001235	SO:0001041	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001169	"A ds_RNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as double stranded RNA." [SO:ke]	1073323	\N	SOFA	sequence	2	SO	replicon	ds_RNA_viral_sequence
SO:0001037	SO:0001038	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0001169	"A ds_RNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as double stranded RNA." [SO:ke]	1904384	\N	SOFA	sequence	3	SO	mobile_genetic_element	ds_RNA_viral_sequence
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001169	"A ds_RNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as double stranded RNA." [SO:ke]	1904385	SOFA	SOFA	sequence	3	SO	biological_region	ds_RNA_viral_sequence
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001169	"A ds_RNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as double stranded RNA." [SO:ke]	2928823	SOFA	SOFA	sequence	4	SO	biological_region	ds_RNA_viral_sequence
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001169	"A ds_RNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as double stranded RNA." [SO:ke]	4002058	SOFA	SOFA	sequence	5	SO	region	ds_RNA_viral_sequence
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001169	"A ds_RNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as double stranded RNA." [SO:ke]	4385798	SOFA	SOFA	sequence	6	SO	sequence_feature	ds_RNA_viral_sequence
SO:0001170	\N	\N	"A kind of DNA transposon that populates the genomes of protists, fungi, and animals, characterized by a unique set of proteins necessary for their transposition, including a protein-primed DNA polymerase B, retroviral integrase, cysteine protease, and ATPase. Polintons are characterized by 6-bp target site duplications, terminal-inverted repeats that are several hundred nucleotides long, and 5'-AG and TC-3' termini. Polintons exist as autonomous and nonautonomous elements." [PMID:16537396]	SO:0001170	"A kind of DNA transposon that populates the genomes of protists, fungi, and animals, characterized by a unique set of proteins necessary for their transposition, including a protein-primed DNA polymerase B, retroviral integrase, cysteine protease, and ATPase. Polintons are characterized by 6-bp target site duplications, terminal-inverted repeats that are several hundred nucleotides long, and 5'-AG and TC-3' termini. Polintons exist as autonomous and nonautonomous elements." [PMID:16537396]	46047	\N	\N	sequence	0	SO	polinton	polinton
SO:0000208	SO:0001170	\N	"A DNA transposable element defined as having termini with perfect, or nearly perfect short inverted repeats, generally 10 - 40 nucleotides long." [http://www.genetics.org/cgi/reprint/156/4/1983.pdf]	SO:0001170	"A kind of DNA transposon that populates the genomes of protists, fungi, and animals, characterized by a unique set of proteins necessary for their transposition, including a protein-primed DNA polymerase B, retroviral integrase, cysteine protease, and ATPase. Polintons are characterized by 6-bp target site duplications, terminal-inverted repeats that are several hundred nucleotides long, and 5'-AG and TC-3' termini. Polintons exist as autonomous and nonautonomous elements." [PMID:16537396]	490773	\N	\N	sequence	1	SO	terminal_inverted_repeat_element	polinton
SO:0000182	SO:0000208	\N	"A transposon where the mechanism of transposition is via a DNA intermediate." [SO:ke]	SO:0001170	"A kind of DNA transposon that populates the genomes of protists, fungi, and animals, characterized by a unique set of proteins necessary for their transposition, including a protein-primed DNA polymerase B, retroviral integrase, cysteine protease, and ATPase. Polintons are characterized by 6-bp target site duplications, terminal-inverted repeats that are several hundred nucleotides long, and 5'-AG and TC-3' termini. Polintons exist as autonomous and nonautonomous elements." [PMID:16537396]	1073324	\N	\N	sequence	2	SO	DNA_transposon	polinton
SO:0000101	SO:0000182	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0001170	"A kind of DNA transposon that populates the genomes of protists, fungi, and animals, characterized by a unique set of proteins necessary for their transposition, including a protein-primed DNA polymerase B, retroviral integrase, cysteine protease, and ATPase. Polintons are characterized by 6-bp target site duplications, terminal-inverted repeats that are several hundred nucleotides long, and 5'-AG and TC-3' termini. Polintons exist as autonomous and nonautonomous elements." [PMID:16537396]	1904386	\N	SOFA	sequence	3	SO	transposable_element	polinton
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0001170	"A kind of DNA transposon that populates the genomes of protists, fungi, and animals, characterized by a unique set of proteins necessary for their transposition, including a protein-primed DNA polymerase B, retroviral integrase, cysteine protease, and ATPase. Polintons are characterized by 6-bp target site duplications, terminal-inverted repeats that are several hundred nucleotides long, and 5'-AG and TC-3' termini. Polintons exist as autonomous and nonautonomous elements." [PMID:16537396]	2928825	SOFA	SOFA	sequence	4	SO	integrated_mobile_genetic_element	polinton
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0001170	"A kind of DNA transposon that populates the genomes of protists, fungi, and animals, characterized by a unique set of proteins necessary for their transposition, including a protein-primed DNA polymerase B, retroviral integrase, cysteine protease, and ATPase. Polintons are characterized by 6-bp target site duplications, terminal-inverted repeats that are several hundred nucleotides long, and 5'-AG and TC-3' termini. Polintons exist as autonomous and nonautonomous elements." [PMID:16537396]	4002060	SOFA	SOFA	sequence	5	SO	mobile_genetic_element	polinton
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001170	"A kind of DNA transposon that populates the genomes of protists, fungi, and animals, characterized by a unique set of proteins necessary for their transposition, including a protein-primed DNA polymerase B, retroviral integrase, cysteine protease, and ATPase. Polintons are characterized by 6-bp target site duplications, terminal-inverted repeats that are several hundred nucleotides long, and 5'-AG and TC-3' termini. Polintons exist as autonomous and nonautonomous elements." [PMID:16537396]	4966471	SOFA	SOFA	sequence	6	SO	biological_region	polinton
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001170	"A kind of DNA transposon that populates the genomes of protists, fungi, and animals, characterized by a unique set of proteins necessary for their transposition, including a protein-primed DNA polymerase B, retroviral integrase, cysteine protease, and ATPase. Polintons are characterized by 6-bp target site duplications, terminal-inverted repeats that are several hundred nucleotides long, and 5'-AG and TC-3' termini. Polintons exist as autonomous and nonautonomous elements." [PMID:16537396]	5741259	SOFA	SOFA	sequence	7	SO	region	polinton
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001170	"A kind of DNA transposon that populates the genomes of protists, fungi, and animals, characterized by a unique set of proteins necessary for their transposition, including a protein-primed DNA polymerase B, retroviral integrase, cysteine protease, and ATPase. Polintons are characterized by 6-bp target site duplications, terminal-inverted repeats that are several hundred nucleotides long, and 5'-AG and TC-3' termini. Polintons exist as autonomous and nonautonomous elements." [PMID:16537396]	6311090	SOFA	SOFA	sequence	8	SO	sequence_feature	polinton
SO:0001171	\N	\N	"A component of the large ribosomal subunit in mitochondrial rRNA." [RSC:cb]	SO:0001171	"A component of the large ribosomal subunit in mitochondrial rRNA." [RSC:cb]	46048	\N	\N	sequence	0	SO	rRNA_21S	rRNA_21S
SO:0000651	SO:0001171	\N	"Ribosomal RNA transcript that structures the large subunit of the ribosome." [SO:ke]	SO:0001171	"A component of the large ribosomal subunit in mitochondrial rRNA." [RSC:cb]	490774	\N	SOFA	sequence	1	SO	large_subunit_rRNA	rRNA_21S
SO:0000252	SO:0000651	\N	"RNA that comprises part of a ribosome, and that can provide both structural scaffolding and catalytic activity." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, ISBN:0198506732]	SO:0001171	"A component of the large ribosomal subunit in mitochondrial rRNA." [RSC:cb]	1073325	SOFA	SOFA	sequence	2	SO	rRNA	rRNA_21S
SO:0000655	SO:0000252	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0001171	"A component of the large ribosomal subunit in mitochondrial rRNA." [RSC:cb]	1904387	SOFA	SOFA	sequence	3	SO	ncRNA	rRNA_21S
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001171	"A component of the large ribosomal subunit in mitochondrial rRNA." [RSC:cb]	2928826	SOFA	SOFA	sequence	4	SO	mature_transcript	rRNA_21S
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001171	"A component of the large ribosomal subunit in mitochondrial rRNA." [RSC:cb]	4002061	SOFA	SOFA	sequence	5	SO	transcript	rRNA_21S
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001171	"A component of the large ribosomal subunit in mitochondrial rRNA." [RSC:cb]	4966472	SOFA	SOFA	sequence	6	SO	gene_member_region	rRNA_21S
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001171	"A component of the large ribosomal subunit in mitochondrial rRNA." [RSC:cb]	5741260	SOFA	SOFA	sequence	7	SO	biological_region	rRNA_21S
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001171	"A component of the large ribosomal subunit in mitochondrial rRNA." [RSC:cb]	6311091	SOFA	SOFA	sequence	8	SO	region	rRNA_21S
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001171	"A component of the large ribosomal subunit in mitochondrial rRNA." [RSC:cb]	6699364	SOFA	SOFA	sequence	9	SO	sequence_feature	rRNA_21S
SO:0001172	\N	\N	"A region of a tRNA." [RSC:cb]	SO:0001172	"A region of a tRNA." [RSC:cb]	46049	\N	\N	sequence	0	SO	tRNA_region	tRNA_region
SO:0000253	SO:0001172	\N	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	SO:0001172	"A region of a tRNA." [RSC:cb]	490775	\N	SOFA	sequence	1	SO	tRNA	tRNA_region
SO:0000834	SO:0001172	\N	"A region of a mature transcript." [SO:ke]	SO:0001172	"A region of a tRNA." [RSC:cb]	490776	\N	SOFA	sequence	1	SO	mature_transcript_region	tRNA_region
SO:0000655	SO:0000253	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0001172	"A region of a tRNA." [RSC:cb]	1073326	SOFA	SOFA	sequence	2	SO	ncRNA	tRNA_region
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0001172	"A region of a tRNA." [RSC:cb]	1073327	SOFA	SOFA	sequence	2	SO	transcript_region	tRNA_region
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001172	"A region of a tRNA." [RSC:cb]	1904388	SOFA	SOFA	sequence	3	SO	mature_transcript	tRNA_region
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001172	"A region of a tRNA." [RSC:cb]	1904389	SOFA	SOFA	sequence	3	SO	transcript	tRNA_region
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001172	"A region of a tRNA." [RSC:cb]	1904390	SOFA	SOFA	sequence	3	SO	biological_region	tRNA_region
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001172	"A region of a tRNA." [RSC:cb]	2928827	SOFA	SOFA	sequence	4	SO	transcript	tRNA_region
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001172	"A region of a tRNA." [RSC:cb]	4002062	SOFA	SOFA	sequence	5	SO	gene_member_region	tRNA_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001172	"A region of a tRNA." [RSC:cb]	5407454	SOFA	SOFA	sequence	7	SO	region	tRNA_region
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001172	"A region of a tRNA." [RSC:cb]	4385799	SOFA	SOFA	sequence	6	SO	biological_region	tRNA_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001172	"A region of a tRNA." [RSC:cb]	5876445	SOFA	SOFA	sequence	8	SO	sequence_feature	tRNA_region
SO:0001173	\N	\N	"A sequence of seven nucleotide bases in tRNA which contains the anticodon. It has the sequence 5'-pyrimidine-purine-anticodon-modified purine-any base-3." [ISBN:0716719207]	SO:0001173	"A sequence of seven nucleotide bases in tRNA which contains the anticodon. It has the sequence 5'-pyrimidine-purine-anticodon-modified purine-any base-3." [ISBN:0716719207]	46050	\N	\N	sequence	0	SO	anticodon_loop	anticodon_loop
SO:0001172	SO:0001173	\N	"A region of a tRNA." [RSC:cb]	SO:0001173	"A sequence of seven nucleotide bases in tRNA which contains the anticodon. It has the sequence 5'-pyrimidine-purine-anticodon-modified purine-any base-3." [ISBN:0716719207]	490777	\N	\N	sequence	1	SO	tRNA_region	anticodon_loop
SO:0000253	SO:0001172	\N	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	SO:0001173	"A sequence of seven nucleotide bases in tRNA which contains the anticodon. It has the sequence 5'-pyrimidine-purine-anticodon-modified purine-any base-3." [ISBN:0716719207]	1073328	\N	SOFA	sequence	2	SO	tRNA	anticodon_loop
SO:0000834	SO:0001172	\N	"A region of a mature transcript." [SO:ke]	SO:0001173	"A sequence of seven nucleotide bases in tRNA which contains the anticodon. It has the sequence 5'-pyrimidine-purine-anticodon-modified purine-any base-3." [ISBN:0716719207]	1073329	\N	SOFA	sequence	2	SO	mature_transcript_region	anticodon_loop
SO:0000655	SO:0000253	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0001173	"A sequence of seven nucleotide bases in tRNA which contains the anticodon. It has the sequence 5'-pyrimidine-purine-anticodon-modified purine-any base-3." [ISBN:0716719207]	1904391	SOFA	SOFA	sequence	3	SO	ncRNA	anticodon_loop
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0001173	"A sequence of seven nucleotide bases in tRNA which contains the anticodon. It has the sequence 5'-pyrimidine-purine-anticodon-modified purine-any base-3." [ISBN:0716719207]	1904392	SOFA	SOFA	sequence	3	SO	transcript_region	anticodon_loop
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001173	"A sequence of seven nucleotide bases in tRNA which contains the anticodon. It has the sequence 5'-pyrimidine-purine-anticodon-modified purine-any base-3." [ISBN:0716719207]	2928830	SOFA	SOFA	sequence	4	SO	mature_transcript	anticodon_loop
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001173	"A sequence of seven nucleotide bases in tRNA which contains the anticodon. It has the sequence 5'-pyrimidine-purine-anticodon-modified purine-any base-3." [ISBN:0716719207]	2928831	SOFA	SOFA	sequence	4	SO	transcript	anticodon_loop
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001173	"A sequence of seven nucleotide bases in tRNA which contains the anticodon. It has the sequence 5'-pyrimidine-purine-anticodon-modified purine-any base-3." [ISBN:0716719207]	2928832	SOFA	SOFA	sequence	4	SO	biological_region	anticodon_loop
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001173	"A sequence of seven nucleotide bases in tRNA which contains the anticodon. It has the sequence 5'-pyrimidine-purine-anticodon-modified purine-any base-3." [ISBN:0716719207]	4002065	SOFA	SOFA	sequence	5	SO	transcript	anticodon_loop
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001173	"A sequence of seven nucleotide bases in tRNA which contains the anticodon. It has the sequence 5'-pyrimidine-purine-anticodon-modified purine-any base-3." [ISBN:0716719207]	4966474	SOFA	SOFA	sequence	6	SO	gene_member_region	anticodon_loop
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001173	"A sequence of seven nucleotide bases in tRNA which contains the anticodon. It has the sequence 5'-pyrimidine-purine-anticodon-modified purine-any base-3." [ISBN:0716719207]	6146665	SOFA	SOFA	sequence	8	SO	region	anticodon_loop
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001173	"A sequence of seven nucleotide bases in tRNA which contains the anticodon. It has the sequence 5'-pyrimidine-purine-anticodon-modified purine-any base-3." [ISBN:0716719207]	5407455	SOFA	SOFA	sequence	7	SO	biological_region	anticodon_loop
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001173	"A sequence of seven nucleotide bases in tRNA which contains the anticodon. It has the sequence 5'-pyrimidine-purine-anticodon-modified purine-any base-3." [ISBN:0716719207]	6469751	SOFA	SOFA	sequence	9	SO	sequence_feature	anticodon_loop
SO:0001174	\N	\N	"A sequence of three nucleotide bases in tRNA which recognizes a codon in mRNA." [RSC:cb]	SO:0001174	"A sequence of three nucleotide bases in tRNA which recognizes a codon in mRNA." [RSC:cb]	46051	\N	\N	sequence	0	SO	anticodon	anticodon
SO:0001172	SO:0001174	\N	"A region of a tRNA." [RSC:cb]	SO:0001174	"A sequence of three nucleotide bases in tRNA which recognizes a codon in mRNA." [RSC:cb]	490778	\N	\N	sequence	1	SO	tRNA_region	anticodon
SO:0001173	SO:0001174	\N	"A sequence of seven nucleotide bases in tRNA which contains the anticodon. It has the sequence 5'-pyrimidine-purine-anticodon-modified purine-any base-3." [ISBN:0716719207]	SO:0001174	"A sequence of three nucleotide bases in tRNA which recognizes a codon in mRNA." [RSC:cb]	490779	\N	\N	sequence	1	SO	anticodon_loop	anticodon
SO:0000253	SO:0001172	\N	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	SO:0001174	"A sequence of three nucleotide bases in tRNA which recognizes a codon in mRNA." [RSC:cb]	1904395	\N	SOFA	sequence	3	SO	tRNA	anticodon
SO:0000834	SO:0001172	\N	"A region of a mature transcript." [SO:ke]	SO:0001174	"A sequence of three nucleotide bases in tRNA which recognizes a codon in mRNA." [RSC:cb]	1904396	\N	SOFA	sequence	3	SO	mature_transcript_region	anticodon
SO:0001172	SO:0001173	\N	"A region of a tRNA." [RSC:cb]	SO:0001174	"A sequence of three nucleotide bases in tRNA which recognizes a codon in mRNA." [RSC:cb]	1073332	\N	\N	sequence	2	SO	tRNA_region	anticodon
SO:0000655	SO:0000253	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0001174	"A sequence of three nucleotide bases in tRNA which recognizes a codon in mRNA." [RSC:cb]	2018239	SOFA	SOFA	sequence	4	SO	ncRNA	anticodon
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0001174	"A sequence of three nucleotide bases in tRNA which recognizes a codon in mRNA." [RSC:cb]	2018240	SOFA	SOFA	sequence	4	SO	transcript_region	anticodon
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001174	"A sequence of three nucleotide bases in tRNA which recognizes a codon in mRNA." [RSC:cb]	3173951	SOFA	SOFA	sequence	5	SO	mature_transcript	anticodon
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001174	"A sequence of three nucleotide bases in tRNA which recognizes a codon in mRNA." [RSC:cb]	3173952	SOFA	SOFA	sequence	5	SO	transcript	anticodon
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001174	"A sequence of three nucleotide bases in tRNA which recognizes a codon in mRNA." [RSC:cb]	3173953	SOFA	SOFA	sequence	5	SO	biological_region	anticodon
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001174	"A sequence of three nucleotide bases in tRNA which recognizes a codon in mRNA." [RSC:cb]	4385800	SOFA	SOFA	sequence	6	SO	transcript	anticodon
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001174	"A sequence of three nucleotide bases in tRNA which recognizes a codon in mRNA." [RSC:cb]	5407456	SOFA	SOFA	sequence	7	SO	gene_member_region	anticodon
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001174	"A sequence of three nucleotide bases in tRNA which recognizes a codon in mRNA." [RSC:cb]	6550273	SOFA	SOFA	sequence	9	SO	region	anticodon
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001174	"A sequence of three nucleotide bases in tRNA which recognizes a codon in mRNA." [RSC:cb]	5996423	SOFA	SOFA	sequence	8	SO	biological_region	anticodon
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001174	"A sequence of three nucleotide bases in tRNA which recognizes a codon in mRNA." [RSC:cb]	6807596	SOFA	SOFA	sequence	10	SO	sequence_feature	anticodon
SO:0001175	\N	\N	"Base sequence at the 3' end of a tRNA. The 3'-hydroxyl group on the terminal adenosine is the attachment point for the amino acid." [ISBN:0716719207]	SO:0001175	"Base sequence at the 3' end of a tRNA. The 3'-hydroxyl group on the terminal adenosine is the attachment point for the amino acid." [ISBN:0716719207]	46052	\N	\N	sequence	0	SO	CCA_tail	CCA_tail
SO:0001172	SO:0001175	\N	"A region of a tRNA." [RSC:cb]	SO:0001175	"Base sequence at the 3' end of a tRNA. The 3'-hydroxyl group on the terminal adenosine is the attachment point for the amino acid." [ISBN:0716719207]	490780	\N	\N	sequence	1	SO	tRNA_region	CCA_tail
SO:0000253	SO:0001172	\N	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	SO:0001175	"Base sequence at the 3' end of a tRNA. The 3'-hydroxyl group on the terminal adenosine is the attachment point for the amino acid." [ISBN:0716719207]	1073333	\N	SOFA	sequence	2	SO	tRNA	CCA_tail
SO:0000834	SO:0001172	\N	"A region of a mature transcript." [SO:ke]	SO:0001175	"Base sequence at the 3' end of a tRNA. The 3'-hydroxyl group on the terminal adenosine is the attachment point for the amino acid." [ISBN:0716719207]	1073334	\N	SOFA	sequence	2	SO	mature_transcript_region	CCA_tail
SO:0000655	SO:0000253	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0001175	"Base sequence at the 3' end of a tRNA. The 3'-hydroxyl group on the terminal adenosine is the attachment point for the amino acid." [ISBN:0716719207]	1904397	SOFA	SOFA	sequence	3	SO	ncRNA	CCA_tail
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0001175	"Base sequence at the 3' end of a tRNA. The 3'-hydroxyl group on the terminal adenosine is the attachment point for the amino acid." [ISBN:0716719207]	1904398	SOFA	SOFA	sequence	3	SO	transcript_region	CCA_tail
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001175	"Base sequence at the 3' end of a tRNA. The 3'-hydroxyl group on the terminal adenosine is the attachment point for the amino acid." [ISBN:0716719207]	2928836	SOFA	SOFA	sequence	4	SO	mature_transcript	CCA_tail
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001175	"Base sequence at the 3' end of a tRNA. The 3'-hydroxyl group on the terminal adenosine is the attachment point for the amino acid." [ISBN:0716719207]	2928837	SOFA	SOFA	sequence	4	SO	transcript	CCA_tail
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001175	"Base sequence at the 3' end of a tRNA. The 3'-hydroxyl group on the terminal adenosine is the attachment point for the amino acid." [ISBN:0716719207]	2928838	SOFA	SOFA	sequence	4	SO	biological_region	CCA_tail
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001175	"Base sequence at the 3' end of a tRNA. The 3'-hydroxyl group on the terminal adenosine is the attachment point for the amino acid." [ISBN:0716719207]	4002071	SOFA	SOFA	sequence	5	SO	transcript	CCA_tail
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001175	"Base sequence at the 3' end of a tRNA. The 3'-hydroxyl group on the terminal adenosine is the attachment point for the amino acid." [ISBN:0716719207]	4966479	SOFA	SOFA	sequence	6	SO	gene_member_region	CCA_tail
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001175	"Base sequence at the 3' end of a tRNA. The 3'-hydroxyl group on the terminal adenosine is the attachment point for the amino acid." [ISBN:0716719207]	6146667	SOFA	SOFA	sequence	8	SO	region	CCA_tail
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001175	"Base sequence at the 3' end of a tRNA. The 3'-hydroxyl group on the terminal adenosine is the attachment point for the amino acid." [ISBN:0716719207]	5407459	SOFA	SOFA	sequence	7	SO	biological_region	CCA_tail
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001175	"Base sequence at the 3' end of a tRNA. The 3'-hydroxyl group on the terminal adenosine is the attachment point for the amino acid." [ISBN:0716719207]	6469753	SOFA	SOFA	sequence	9	SO	sequence_feature	CCA_tail
SO:0001176	\N	\N	"Non-base-paired sequence of nucleotide bases in tRNA. It contains several dihydrouracil residues." [ISBN:071671920]	SO:0001176	"Non-base-paired sequence of nucleotide bases in tRNA. It contains several dihydrouracil residues." [ISBN:071671920]	46053	\N	\N	sequence	0	SO	DHU_loop	DHU_loop
SO:0001172	SO:0001176	\N	"A region of a tRNA." [RSC:cb]	SO:0001176	"Non-base-paired sequence of nucleotide bases in tRNA. It contains several dihydrouracil residues." [ISBN:071671920]	490781	\N	\N	sequence	1	SO	tRNA_region	DHU_loop
SO:0000253	SO:0001172	\N	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	SO:0001176	"Non-base-paired sequence of nucleotide bases in tRNA. It contains several dihydrouracil residues." [ISBN:071671920]	1073335	\N	SOFA	sequence	2	SO	tRNA	DHU_loop
SO:0000834	SO:0001172	\N	"A region of a mature transcript." [SO:ke]	SO:0001176	"Non-base-paired sequence of nucleotide bases in tRNA. It contains several dihydrouracil residues." [ISBN:071671920]	1073336	\N	SOFA	sequence	2	SO	mature_transcript_region	DHU_loop
SO:0000655	SO:0000253	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0001176	"Non-base-paired sequence of nucleotide bases in tRNA. It contains several dihydrouracil residues." [ISBN:071671920]	1904399	SOFA	SOFA	sequence	3	SO	ncRNA	DHU_loop
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0001176	"Non-base-paired sequence of nucleotide bases in tRNA. It contains several dihydrouracil residues." [ISBN:071671920]	1904400	SOFA	SOFA	sequence	3	SO	transcript_region	DHU_loop
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001176	"Non-base-paired sequence of nucleotide bases in tRNA. It contains several dihydrouracil residues." [ISBN:071671920]	2928839	SOFA	SOFA	sequence	4	SO	mature_transcript	DHU_loop
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001176	"Non-base-paired sequence of nucleotide bases in tRNA. It contains several dihydrouracil residues." [ISBN:071671920]	2928840	SOFA	SOFA	sequence	4	SO	transcript	DHU_loop
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001176	"Non-base-paired sequence of nucleotide bases in tRNA. It contains several dihydrouracil residues." [ISBN:071671920]	2928841	SOFA	SOFA	sequence	4	SO	biological_region	DHU_loop
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001176	"Non-base-paired sequence of nucleotide bases in tRNA. It contains several dihydrouracil residues." [ISBN:071671920]	4002074	SOFA	SOFA	sequence	5	SO	transcript	DHU_loop
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001176	"Non-base-paired sequence of nucleotide bases in tRNA. It contains several dihydrouracil residues." [ISBN:071671920]	4966482	SOFA	SOFA	sequence	6	SO	gene_member_region	DHU_loop
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001176	"Non-base-paired sequence of nucleotide bases in tRNA. It contains several dihydrouracil residues." [ISBN:071671920]	6146668	SOFA	SOFA	sequence	8	SO	region	DHU_loop
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001176	"Non-base-paired sequence of nucleotide bases in tRNA. It contains several dihydrouracil residues." [ISBN:071671920]	5407460	SOFA	SOFA	sequence	7	SO	biological_region	DHU_loop
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001176	"Non-base-paired sequence of nucleotide bases in tRNA. It contains several dihydrouracil residues." [ISBN:071671920]	6469754	SOFA	SOFA	sequence	9	SO	sequence_feature	DHU_loop
SO:0001177	\N	\N	"Non-base-paired sequence of three nucleotide bases in tRNA. It has sequence T-Psi-C." [ISBN:0716719207]	SO:0001177	"Non-base-paired sequence of three nucleotide bases in tRNA. It has sequence T-Psi-C." [ISBN:0716719207]	46054	\N	\N	sequence	0	SO	T_loop	T_loop
SO:0001172	SO:0001177	\N	"A region of a tRNA." [RSC:cb]	SO:0001177	"Non-base-paired sequence of three nucleotide bases in tRNA. It has sequence T-Psi-C." [ISBN:0716719207]	490782	\N	\N	sequence	1	SO	tRNA_region	T_loop
SO:0000253	SO:0001172	\N	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	SO:0001177	"Non-base-paired sequence of three nucleotide bases in tRNA. It has sequence T-Psi-C." [ISBN:0716719207]	1073337	\N	SOFA	sequence	2	SO	tRNA	T_loop
SO:0000834	SO:0001172	\N	"A region of a mature transcript." [SO:ke]	SO:0001177	"Non-base-paired sequence of three nucleotide bases in tRNA. It has sequence T-Psi-C." [ISBN:0716719207]	1073338	\N	SOFA	sequence	2	SO	mature_transcript_region	T_loop
SO:0000655	SO:0000253	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0001177	"Non-base-paired sequence of three nucleotide bases in tRNA. It has sequence T-Psi-C." [ISBN:0716719207]	1904401	SOFA	SOFA	sequence	3	SO	ncRNA	T_loop
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0001177	"Non-base-paired sequence of three nucleotide bases in tRNA. It has sequence T-Psi-C." [ISBN:0716719207]	1904402	SOFA	SOFA	sequence	3	SO	transcript_region	T_loop
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001177	"Non-base-paired sequence of three nucleotide bases in tRNA. It has sequence T-Psi-C." [ISBN:0716719207]	2928842	SOFA	SOFA	sequence	4	SO	mature_transcript	T_loop
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001177	"Non-base-paired sequence of three nucleotide bases in tRNA. It has sequence T-Psi-C." [ISBN:0716719207]	2928843	SOFA	SOFA	sequence	4	SO	transcript	T_loop
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001177	"Non-base-paired sequence of three nucleotide bases in tRNA. It has sequence T-Psi-C." [ISBN:0716719207]	2928844	SOFA	SOFA	sequence	4	SO	biological_region	T_loop
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001177	"Non-base-paired sequence of three nucleotide bases in tRNA. It has sequence T-Psi-C." [ISBN:0716719207]	4002077	SOFA	SOFA	sequence	5	SO	transcript	T_loop
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001177	"Non-base-paired sequence of three nucleotide bases in tRNA. It has sequence T-Psi-C." [ISBN:0716719207]	4966485	SOFA	SOFA	sequence	6	SO	gene_member_region	T_loop
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001177	"Non-base-paired sequence of three nucleotide bases in tRNA. It has sequence T-Psi-C." [ISBN:0716719207]	6146669	SOFA	SOFA	sequence	8	SO	region	T_loop
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001177	"Non-base-paired sequence of three nucleotide bases in tRNA. It has sequence T-Psi-C." [ISBN:0716719207]	5407461	SOFA	SOFA	sequence	7	SO	biological_region	T_loop
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001177	"Non-base-paired sequence of three nucleotide bases in tRNA. It has sequence T-Psi-C." [ISBN:0716719207]	6469755	SOFA	SOFA	sequence	9	SO	sequence_feature	T_loop
SO:0001178	\N	\N	"A primary transcript encoding pyrrolysyl tRNA (SO:0000766)." [RSC:cb]	SO:0001178	"A primary transcript encoding pyrrolysyl tRNA (SO:0000766)." [RSC:cb]	46055	\N	\N	sequence	0	SO	pyrrolysine_tRNA_primary_transcript	pyrrolysine_tRNA_primary_transcript
SO:0000210	SO:0001178	\N	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	SO:0001178	"A primary transcript encoding pyrrolysyl tRNA (SO:0000766)." [RSC:cb]	490783	\N	\N	sequence	1	SO	tRNA_primary_transcript	pyrrolysine_tRNA_primary_transcript
SO:0000483	SO:0000210	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0001178	"A primary transcript encoding pyrrolysyl tRNA (SO:0000766)." [RSC:cb]	1073339	\N	SOFA	sequence	2	SO	nc_primary_transcript	pyrrolysine_tRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001178	"A primary transcript encoding pyrrolysyl tRNA (SO:0000766)." [RSC:cb]	1904403	SOFA	SOFA	sequence	3	SO	primary_transcript	pyrrolysine_tRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001178	"A primary transcript encoding pyrrolysyl tRNA (SO:0000766)." [RSC:cb]	2928845	SOFA	SOFA	sequence	4	SO	transcript	pyrrolysine_tRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001178	"A primary transcript encoding pyrrolysyl tRNA (SO:0000766)." [RSC:cb]	4002080	SOFA	SOFA	sequence	5	SO	gene_member_region	pyrrolysine_tRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001178	"A primary transcript encoding pyrrolysyl tRNA (SO:0000766)." [RSC:cb]	4966488	SOFA	SOFA	sequence	6	SO	biological_region	pyrrolysine_tRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001178	"A primary transcript encoding pyrrolysyl tRNA (SO:0000766)." [RSC:cb]	5741266	SOFA	SOFA	sequence	7	SO	region	pyrrolysine_tRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001178	"A primary transcript encoding pyrrolysyl tRNA (SO:0000766)." [RSC:cb]	6311092	SOFA	SOFA	sequence	8	SO	sequence_feature	pyrrolysine_tRNA_primary_transcript
SO:0001179	\N	\N	"U3 snoRNA is a member of the box C/D class of small nucleolar RNAs. The U3 snoRNA secondary structure is characterised by a small 5' domain (with boxes A and A'), and a larger 3' domain (with boxes B, C, C', and D), the two domains being linked by a single-stranded hinge. Boxes B and C form the B/C motif, which appears to be exclusive to U3 snoRNAs, and boxes C' and D form the C'/D motif. The latter is functionally similar to the C/D motifs found in other snoRNAs. The 5' domain and the hinge region act as a pre-rRNA-binding domain. The 3' domain has conserved protein-binding sites. Both the box B/C and box C'/D motifs are sufficient for nuclear retention of U3 snoRNA. The box C'/D motif is also necessary for nucleolar localization, stability and hypermethylation of U3 snoRNA. Both box B/C and C'/D motifs are involved in specific protein interactions and are necessary for the rRNA processing functions of U3 snoRNA." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00012]	SO:0001179	"U3 snoRNA is a member of the box C/D class of small nucleolar RNAs. The U3 snoRNA secondary structure is characterised by a small 5' domain (with boxes A and A'), and a larger 3' domain (with boxes B, C, C', and D), the two domains being linked by a single-stranded hinge. Boxes B and C form the B/C motif, which appears to be exclusive to U3 snoRNAs, and boxes C' and D form the C'/D motif. The latter is functionally similar to the C/D motifs found in other snoRNAs. The 5' domain and the hinge region act as a pre-rRNA-binding domain. The 3' domain has conserved protein-binding sites. Both the box B/C and box C'/D motifs are sufficient for nuclear retention of U3 snoRNA. The box C'/D motif is also necessary for nucleolar localization, stability and hypermethylation of U3 snoRNA. Both box B/C and C'/D motifs are involved in specific protein interactions and are necessary for the rRNA processing functions of U3 snoRNA." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00012]	46056	\N	\N	sequence	0	SO	U3_snoRNA	U3_snoRNA
SO:0000593	SO:0001179	\N	"Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'." [http://www.bio.umass.edu/biochem/rna-sequence/Yeast_snoRNA_Database/snoRNA_DataBase.html]	SO:0001179	"U3 snoRNA is a member of the box C/D class of small nucleolar RNAs. The U3 snoRNA secondary structure is characterised by a small 5' domain (with boxes A and A'), and a larger 3' domain (with boxes B, C, C', and D), the two domains being linked by a single-stranded hinge. Boxes B and C form the B/C motif, which appears to be exclusive to U3 snoRNAs, and boxes C' and D form the C'/D motif. The latter is functionally similar to the C/D motifs found in other snoRNAs. The 5' domain and the hinge region act as a pre-rRNA-binding domain. The 3' domain has conserved protein-binding sites. Both the box B/C and box C'/D motifs are sufficient for nuclear retention of U3 snoRNA. The box C'/D motif is also necessary for nucleolar localization, stability and hypermethylation of U3 snoRNA. Both box B/C and C'/D motifs are involved in specific protein interactions and are necessary for the rRNA processing functions of U3 snoRNA." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00012]	490784	\N	SOFA	sequence	1	SO	C_D_box_snoRNA	U3_snoRNA
SO:0000275	SO:0000593	\N	"A snoRNA (small nucleolar RNA) is any one of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA." [GOC:kgc]	SO:0001179	"U3 snoRNA is a member of the box C/D class of small nucleolar RNAs. The U3 snoRNA secondary structure is characterised by a small 5' domain (with boxes A and A'), and a larger 3' domain (with boxes B, C, C', and D), the two domains being linked by a single-stranded hinge. Boxes B and C form the B/C motif, which appears to be exclusive to U3 snoRNAs, and boxes C' and D form the C'/D motif. The latter is functionally similar to the C/D motifs found in other snoRNAs. The 5' domain and the hinge region act as a pre-rRNA-binding domain. The 3' domain has conserved protein-binding sites. Both the box B/C and box C'/D motifs are sufficient for nuclear retention of U3 snoRNA. The box C'/D motif is also necessary for nucleolar localization, stability and hypermethylation of U3 snoRNA. Both box B/C and C'/D motifs are involved in specific protein interactions and are necessary for the rRNA processing functions of U3 snoRNA." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00012]	1073340	SOFA	SOFA	sequence	2	SO	snoRNA	U3_snoRNA
SO:0000655	SO:0000275	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0001179	"U3 snoRNA is a member of the box C/D class of small nucleolar RNAs. The U3 snoRNA secondary structure is characterised by a small 5' domain (with boxes A and A'), and a larger 3' domain (with boxes B, C, C', and D), the two domains being linked by a single-stranded hinge. Boxes B and C form the B/C motif, which appears to be exclusive to U3 snoRNAs, and boxes C' and D form the C'/D motif. The latter is functionally similar to the C/D motifs found in other snoRNAs. The 5' domain and the hinge region act as a pre-rRNA-binding domain. The 3' domain has conserved protein-binding sites. Both the box B/C and box C'/D motifs are sufficient for nuclear retention of U3 snoRNA. The box C'/D motif is also necessary for nucleolar localization, stability and hypermethylation of U3 snoRNA. Both box B/C and C'/D motifs are involved in specific protein interactions and are necessary for the rRNA processing functions of U3 snoRNA." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00012]	1904404	SOFA	SOFA	sequence	3	SO	ncRNA	U3_snoRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001179	"U3 snoRNA is a member of the box C/D class of small nucleolar RNAs. The U3 snoRNA secondary structure is characterised by a small 5' domain (with boxes A and A'), and a larger 3' domain (with boxes B, C, C', and D), the two domains being linked by a single-stranded hinge. Boxes B and C form the B/C motif, which appears to be exclusive to U3 snoRNAs, and boxes C' and D form the C'/D motif. The latter is functionally similar to the C/D motifs found in other snoRNAs. The 5' domain and the hinge region act as a pre-rRNA-binding domain. The 3' domain has conserved protein-binding sites. Both the box B/C and box C'/D motifs are sufficient for nuclear retention of U3 snoRNA. The box C'/D motif is also necessary for nucleolar localization, stability and hypermethylation of U3 snoRNA. Both box B/C and C'/D motifs are involved in specific protein interactions and are necessary for the rRNA processing functions of U3 snoRNA." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00012]	2928846	SOFA	SOFA	sequence	4	SO	mature_transcript	U3_snoRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001179	"U3 snoRNA is a member of the box C/D class of small nucleolar RNAs. The U3 snoRNA secondary structure is characterised by a small 5' domain (with boxes A and A'), and a larger 3' domain (with boxes B, C, C', and D), the two domains being linked by a single-stranded hinge. Boxes B and C form the B/C motif, which appears to be exclusive to U3 snoRNAs, and boxes C' and D form the C'/D motif. The latter is functionally similar to the C/D motifs found in other snoRNAs. The 5' domain and the hinge region act as a pre-rRNA-binding domain. The 3' domain has conserved protein-binding sites. Both the box B/C and box C'/D motifs are sufficient for nuclear retention of U3 snoRNA. The box C'/D motif is also necessary for nucleolar localization, stability and hypermethylation of U3 snoRNA. Both box B/C and C'/D motifs are involved in specific protein interactions and are necessary for the rRNA processing functions of U3 snoRNA." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00012]	4002081	SOFA	SOFA	sequence	5	SO	transcript	U3_snoRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001179	"U3 snoRNA is a member of the box C/D class of small nucleolar RNAs. The U3 snoRNA secondary structure is characterised by a small 5' domain (with boxes A and A'), and a larger 3' domain (with boxes B, C, C', and D), the two domains being linked by a single-stranded hinge. Boxes B and C form the B/C motif, which appears to be exclusive to U3 snoRNAs, and boxes C' and D form the C'/D motif. The latter is functionally similar to the C/D motifs found in other snoRNAs. The 5' domain and the hinge region act as a pre-rRNA-binding domain. The 3' domain has conserved protein-binding sites. Both the box B/C and box C'/D motifs are sufficient for nuclear retention of U3 snoRNA. The box C'/D motif is also necessary for nucleolar localization, stability and hypermethylation of U3 snoRNA. Both box B/C and C'/D motifs are involved in specific protein interactions and are necessary for the rRNA processing functions of U3 snoRNA." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00012]	4966489	SOFA	SOFA	sequence	6	SO	gene_member_region	U3_snoRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001179	"U3 snoRNA is a member of the box C/D class of small nucleolar RNAs. The U3 snoRNA secondary structure is characterised by a small 5' domain (with boxes A and A'), and a larger 3' domain (with boxes B, C, C', and D), the two domains being linked by a single-stranded hinge. Boxes B and C form the B/C motif, which appears to be exclusive to U3 snoRNAs, and boxes C' and D form the C'/D motif. The latter is functionally similar to the C/D motifs found in other snoRNAs. The 5' domain and the hinge region act as a pre-rRNA-binding domain. The 3' domain has conserved protein-binding sites. Both the box B/C and box C'/D motifs are sufficient for nuclear retention of U3 snoRNA. The box C'/D motif is also necessary for nucleolar localization, stability and hypermethylation of U3 snoRNA. Both box B/C and C'/D motifs are involved in specific protein interactions and are necessary for the rRNA processing functions of U3 snoRNA." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00012]	5741267	SOFA	SOFA	sequence	7	SO	biological_region	U3_snoRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001179	"U3 snoRNA is a member of the box C/D class of small nucleolar RNAs. The U3 snoRNA secondary structure is characterised by a small 5' domain (with boxes A and A'), and a larger 3' domain (with boxes B, C, C', and D), the two domains being linked by a single-stranded hinge. Boxes B and C form the B/C motif, which appears to be exclusive to U3 snoRNAs, and boxes C' and D form the C'/D motif. The latter is functionally similar to the C/D motifs found in other snoRNAs. The 5' domain and the hinge region act as a pre-rRNA-binding domain. The 3' domain has conserved protein-binding sites. Both the box B/C and box C'/D motifs are sufficient for nuclear retention of U3 snoRNA. The box C'/D motif is also necessary for nucleolar localization, stability and hypermethylation of U3 snoRNA. Both box B/C and C'/D motifs are involved in specific protein interactions and are necessary for the rRNA processing functions of U3 snoRNA." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00012]	6311093	SOFA	SOFA	sequence	8	SO	region	U3_snoRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001179	"U3 snoRNA is a member of the box C/D class of small nucleolar RNAs. The U3 snoRNA secondary structure is characterised by a small 5' domain (with boxes A and A'), and a larger 3' domain (with boxes B, C, C', and D), the two domains being linked by a single-stranded hinge. Boxes B and C form the B/C motif, which appears to be exclusive to U3 snoRNAs, and boxes C' and D form the C'/D motif. The latter is functionally similar to the C/D motifs found in other snoRNAs. The 5' domain and the hinge region act as a pre-rRNA-binding domain. The 3' domain has conserved protein-binding sites. Both the box B/C and box C'/D motifs are sufficient for nuclear retention of U3 snoRNA. The box C'/D motif is also necessary for nucleolar localization, stability and hypermethylation of U3 snoRNA. Both box B/C and C'/D motifs are involved in specific protein interactions and are necessary for the rRNA processing functions of U3 snoRNA." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00012]	6699365	SOFA	SOFA	sequence	9	SO	sequence_feature	U3_snoRNA
SO:0001180	\N	\N	"A cis-acting element found in the 3' UTR of some mRNA which is rich in AUUUA pentamers. Messenger RNAs bearing multiple AU-rich elements are often unstable." [PMID:7892223]	SO:0001180	"A cis-acting element found in the 3' UTR of some mRNA which is rich in AUUUA pentamers. Messenger RNAs bearing multiple AU-rich elements are often unstable." [PMID:7892223]	46057	\N	\N	sequence	0	SO	AU_rich_element	AU_rich_element
SO:0000205	SO:0001180	\N	"A region at the 3' end of a mature transcript (following the stop codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001180	"A cis-acting element found in the 3' UTR of some mRNA which is rich in AUUUA pentamers. Messenger RNAs bearing multiple AU-rich elements are often unstable." [PMID:7892223]	490785	\N	SOFA	sequence	1	SO	three_prime_UTR	AU_rich_element
SO:0000837	SO:0001180	\N	"A region of UTR." [SO:ke]	SO:0001180	"A cis-acting element found in the 3' UTR of some mRNA which is rich in AUUUA pentamers. Messenger RNAs bearing multiple AU-rich elements are often unstable." [PMID:7892223]	490786	\N	SOFA	sequence	1	SO	UTR_region	AU_rich_element
SO:0000203	SO:0000205	\N	"Messenger RNA sequences that are untranslated and lie five prime or three prime to sequences which are translated." [SO:ke]	SO:0001180	"A cis-acting element found in the 3' UTR of some mRNA which is rich in AUUUA pentamers. Messenger RNAs bearing multiple AU-rich elements are often unstable." [PMID:7892223]	1073341	SOFA	SOFA	sequence	2	SO	UTR	AU_rich_element
SO:0000836	SO:0000837	\N	"A region of an mRNA." [SO:cb]	SO:0001180	"A cis-acting element found in the 3' UTR of some mRNA which is rich in AUUUA pentamers. Messenger RNAs bearing multiple AU-rich elements are often unstable." [PMID:7892223]	1073342	SOFA	SOFA	sequence	2	SO	mRNA_region	AU_rich_element
SO:0000836	SO:0000203	\N	"A region of an mRNA." [SO:cb]	SO:0001180	"A cis-acting element found in the 3' UTR of some mRNA which is rich in AUUUA pentamers. Messenger RNAs bearing multiple AU-rich elements are often unstable." [PMID:7892223]	1904405	SOFA	SOFA	sequence	3	SO	mRNA_region	AU_rich_element
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0001180	"A cis-acting element found in the 3' UTR of some mRNA which is rich in AUUUA pentamers. Messenger RNAs bearing multiple AU-rich elements are often unstable." [PMID:7892223]	2928847	SOFA	SOFA	sequence	4	SO	mRNA	AU_rich_element
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:0001180	"A cis-acting element found in the 3' UTR of some mRNA which is rich in AUUUA pentamers. Messenger RNAs bearing multiple AU-rich elements are often unstable." [PMID:7892223]	2928848	SOFA	SOFA	sequence	4	SO	mature_transcript_region	AU_rich_element
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001180	"A cis-acting element found in the 3' UTR of some mRNA which is rich in AUUUA pentamers. Messenger RNAs bearing multiple AU-rich elements are often unstable." [PMID:7892223]	3173954	SOFA	SOFA	sequence	5	SO	mature_transcript	AU_rich_element
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0001180	"A cis-acting element found in the 3' UTR of some mRNA which is rich in AUUUA pentamers. Messenger RNAs bearing multiple AU-rich elements are often unstable." [PMID:7892223]	3173955	SOFA	SOFA	sequence	5	SO	transcript_region	AU_rich_element
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001180	"A cis-acting element found in the 3' UTR of some mRNA which is rich in AUUUA pentamers. Messenger RNAs bearing multiple AU-rich elements are often unstable." [PMID:7892223]	4385803	SOFA	SOFA	sequence	6	SO	transcript	AU_rich_element
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001180	"A cis-acting element found in the 3' UTR of some mRNA which is rich in AUUUA pentamers. Messenger RNAs bearing multiple AU-rich elements are often unstable." [PMID:7892223]	4385804	SOFA	SOFA	sequence	6	SO	transcript	AU_rich_element
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001180	"A cis-acting element found in the 3' UTR of some mRNA which is rich in AUUUA pentamers. Messenger RNAs bearing multiple AU-rich elements are often unstable." [PMID:7892223]	4385805	SOFA	SOFA	sequence	6	SO	biological_region	AU_rich_element
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001180	"A cis-acting element found in the 3' UTR of some mRNA which is rich in AUUUA pentamers. Messenger RNAs bearing multiple AU-rich elements are often unstable." [PMID:7892223]	5407462	SOFA	SOFA	sequence	7	SO	gene_member_region	AU_rich_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001180	"A cis-acting element found in the 3' UTR of some mRNA which is rich in AUUUA pentamers. Messenger RNAs bearing multiple AU-rich elements are often unstable." [PMID:7892223]	6631415	SOFA	SOFA	sequence	9	SO	region	AU_rich_element
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001180	"A cis-acting element found in the 3' UTR of some mRNA which is rich in AUUUA pentamers. Messenger RNAs bearing multiple AU-rich elements are often unstable." [PMID:7892223]	6146670	SOFA	SOFA	sequence	8	SO	biological_region	AU_rich_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001180	"A cis-acting element found in the 3' UTR of some mRNA which is rich in AUUUA pentamers. Messenger RNAs bearing multiple AU-rich elements are often unstable." [PMID:7892223]	6848186	SOFA	SOFA	sequence	10	SO	sequence_feature	AU_rich_element
SO:0001181	\N	\N	"A cis-acting element found in the 3' UTR of some mRNA which is bound by the Drosophila Bruno protein and its homologs." [PMID:10893231]	SO:0001181	"A cis-acting element found in the 3' UTR of some mRNA which is bound by the Drosophila Bruno protein and its homologs." [PMID:10893231]	46058	\N	\N	sequence	0	SO	Bruno_response_element	Bruno_response_element
SO:0000205	SO:0001181	\N	"A region at the 3' end of a mature transcript (following the stop codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001181	"A cis-acting element found in the 3' UTR of some mRNA which is bound by the Drosophila Bruno protein and its homologs." [PMID:10893231]	490787	\N	SOFA	sequence	1	SO	three_prime_UTR	Bruno_response_element
SO:0000837	SO:0001181	\N	"A region of UTR." [SO:ke]	SO:0001181	"A cis-acting element found in the 3' UTR of some mRNA which is bound by the Drosophila Bruno protein and its homologs." [PMID:10893231]	490788	\N	SOFA	sequence	1	SO	UTR_region	Bruno_response_element
SO:0000203	SO:0000205	\N	"Messenger RNA sequences that are untranslated and lie five prime or three prime to sequences which are translated." [SO:ke]	SO:0001181	"A cis-acting element found in the 3' UTR of some mRNA which is bound by the Drosophila Bruno protein and its homologs." [PMID:10893231]	1073343	SOFA	SOFA	sequence	2	SO	UTR	Bruno_response_element
SO:0000836	SO:0000837	\N	"A region of an mRNA." [SO:cb]	SO:0001181	"A cis-acting element found in the 3' UTR of some mRNA which is bound by the Drosophila Bruno protein and its homologs." [PMID:10893231]	1073344	SOFA	SOFA	sequence	2	SO	mRNA_region	Bruno_response_element
SO:0000836	SO:0000203	\N	"A region of an mRNA." [SO:cb]	SO:0001181	"A cis-acting element found in the 3' UTR of some mRNA which is bound by the Drosophila Bruno protein and its homologs." [PMID:10893231]	1904408	SOFA	SOFA	sequence	3	SO	mRNA_region	Bruno_response_element
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0001181	"A cis-acting element found in the 3' UTR of some mRNA which is bound by the Drosophila Bruno protein and its homologs." [PMID:10893231]	2928851	SOFA	SOFA	sequence	4	SO	mRNA	Bruno_response_element
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:0001181	"A cis-acting element found in the 3' UTR of some mRNA which is bound by the Drosophila Bruno protein and its homologs." [PMID:10893231]	2928852	SOFA	SOFA	sequence	4	SO	mature_transcript_region	Bruno_response_element
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001181	"A cis-acting element found in the 3' UTR of some mRNA which is bound by the Drosophila Bruno protein and its homologs." [PMID:10893231]	3173956	SOFA	SOFA	sequence	5	SO	mature_transcript	Bruno_response_element
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0001181	"A cis-acting element found in the 3' UTR of some mRNA which is bound by the Drosophila Bruno protein and its homologs." [PMID:10893231]	3173957	SOFA	SOFA	sequence	5	SO	transcript_region	Bruno_response_element
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001181	"A cis-acting element found in the 3' UTR of some mRNA which is bound by the Drosophila Bruno protein and its homologs." [PMID:10893231]	4385806	SOFA	SOFA	sequence	6	SO	transcript	Bruno_response_element
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001181	"A cis-acting element found in the 3' UTR of some mRNA which is bound by the Drosophila Bruno protein and its homologs." [PMID:10893231]	4385807	SOFA	SOFA	sequence	6	SO	transcript	Bruno_response_element
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001181	"A cis-acting element found in the 3' UTR of some mRNA which is bound by the Drosophila Bruno protein and its homologs." [PMID:10893231]	4385808	SOFA	SOFA	sequence	6	SO	biological_region	Bruno_response_element
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001181	"A cis-acting element found in the 3' UTR of some mRNA which is bound by the Drosophila Bruno protein and its homologs." [PMID:10893231]	5407464	SOFA	SOFA	sequence	7	SO	gene_member_region	Bruno_response_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001181	"A cis-acting element found in the 3' UTR of some mRNA which is bound by the Drosophila Bruno protein and its homologs." [PMID:10893231]	6631416	SOFA	SOFA	sequence	9	SO	region	Bruno_response_element
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001181	"A cis-acting element found in the 3' UTR of some mRNA which is bound by the Drosophila Bruno protein and its homologs." [PMID:10893231]	6146672	SOFA	SOFA	sequence	8	SO	biological_region	Bruno_response_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001181	"A cis-acting element found in the 3' UTR of some mRNA which is bound by the Drosophila Bruno protein and its homologs." [PMID:10893231]	6848187	SOFA	SOFA	sequence	10	SO	sequence_feature	Bruno_response_element
SO:0001182	\N	\N	"A regulatory sequence found in the 5' and 3' UTRs of many mRNAs which encode iron-binding proteins. It has a hairpin structure and is recognized by trans-acting proteins known as iron-regulatory proteins." [PMID:3198610, PMID:8710843]	SO:0001182	"A regulatory sequence found in the 5' and 3' UTRs of many mRNAs which encode iron-binding proteins. It has a hairpin structure and is recognized by trans-acting proteins known as iron-regulatory proteins." [PMID:3198610, PMID:8710843]	46059	\N	\N	sequence	0	SO	iron_responsive_element	iron_responsive_element
SO:0000203	SO:0001182	\N	"Messenger RNA sequences that are untranslated and lie five prime or three prime to sequences which are translated." [SO:ke]	SO:0001182	"A regulatory sequence found in the 5' and 3' UTRs of many mRNAs which encode iron-binding proteins. It has a hairpin structure and is recognized by trans-acting proteins known as iron-regulatory proteins." [PMID:3198610, PMID:8710843]	490789	\N	SOFA	sequence	1	SO	UTR	iron_responsive_element
SO:0000837	SO:0001182	\N	"A region of UTR." [SO:ke]	SO:0001182	"A regulatory sequence found in the 5' and 3' UTRs of many mRNAs which encode iron-binding proteins. It has a hairpin structure and is recognized by trans-acting proteins known as iron-regulatory proteins." [PMID:3198610, PMID:8710843]	490790	\N	SOFA	sequence	1	SO	UTR_region	iron_responsive_element
SO:0000836	SO:0000203	\N	"A region of an mRNA." [SO:cb]	SO:0001182	"A regulatory sequence found in the 5' and 3' UTRs of many mRNAs which encode iron-binding proteins. It has a hairpin structure and is recognized by trans-acting proteins known as iron-regulatory proteins." [PMID:3198610, PMID:8710843]	1073345	SOFA	SOFA	sequence	2	SO	mRNA_region	iron_responsive_element
SO:0000836	SO:0000837	\N	"A region of an mRNA." [SO:cb]	SO:0001182	"A regulatory sequence found in the 5' and 3' UTRs of many mRNAs which encode iron-binding proteins. It has a hairpin structure and is recognized by trans-acting proteins known as iron-regulatory proteins." [PMID:3198610, PMID:8710843]	1073346	SOFA	SOFA	sequence	2	SO	mRNA_region	iron_responsive_element
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0001182	"A regulatory sequence found in the 5' and 3' UTRs of many mRNAs which encode iron-binding proteins. It has a hairpin structure and is recognized by trans-acting proteins known as iron-regulatory proteins." [PMID:3198610, PMID:8710843]	1904411	SOFA	SOFA	sequence	3	SO	mRNA	iron_responsive_element
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:0001182	"A regulatory sequence found in the 5' and 3' UTRs of many mRNAs which encode iron-binding proteins. It has a hairpin structure and is recognized by trans-acting proteins known as iron-regulatory proteins." [PMID:3198610, PMID:8710843]	1904412	SOFA	SOFA	sequence	3	SO	mature_transcript_region	iron_responsive_element
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001182	"A regulatory sequence found in the 5' and 3' UTRs of many mRNAs which encode iron-binding proteins. It has a hairpin structure and is recognized by trans-acting proteins known as iron-regulatory proteins." [PMID:3198610, PMID:8710843]	2928855	SOFA	SOFA	sequence	4	SO	mature_transcript	iron_responsive_element
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0001182	"A regulatory sequence found in the 5' and 3' UTRs of many mRNAs which encode iron-binding proteins. It has a hairpin structure and is recognized by trans-acting proteins known as iron-regulatory proteins." [PMID:3198610, PMID:8710843]	2928856	SOFA	SOFA	sequence	4	SO	transcript_region	iron_responsive_element
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001182	"A regulatory sequence found in the 5' and 3' UTRs of many mRNAs which encode iron-binding proteins. It has a hairpin structure and is recognized by trans-acting proteins known as iron-regulatory proteins." [PMID:3198610, PMID:8710843]	4002088	SOFA	SOFA	sequence	5	SO	transcript	iron_responsive_element
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001182	"A regulatory sequence found in the 5' and 3' UTRs of many mRNAs which encode iron-binding proteins. It has a hairpin structure and is recognized by trans-acting proteins known as iron-regulatory proteins." [PMID:3198610, PMID:8710843]	4002089	SOFA	SOFA	sequence	5	SO	transcript	iron_responsive_element
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001182	"A regulatory sequence found in the 5' and 3' UTRs of many mRNAs which encode iron-binding proteins. It has a hairpin structure and is recognized by trans-acting proteins known as iron-regulatory proteins." [PMID:3198610, PMID:8710843]	4002090	SOFA	SOFA	sequence	5	SO	biological_region	iron_responsive_element
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001182	"A regulatory sequence found in the 5' and 3' UTRs of many mRNAs which encode iron-binding proteins. It has a hairpin structure and is recognized by trans-acting proteins known as iron-regulatory proteins." [PMID:3198610, PMID:8710843]	4966494	SOFA	SOFA	sequence	6	SO	gene_member_region	iron_responsive_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001182	"A regulatory sequence found in the 5' and 3' UTRs of many mRNAs which encode iron-binding proteins. It has a hairpin structure and is recognized by trans-acting proteins known as iron-regulatory proteins." [PMID:3198610, PMID:8710843]	6311096	SOFA	SOFA	sequence	8	SO	region	iron_responsive_element
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001182	"A regulatory sequence found in the 5' and 3' UTRs of many mRNAs which encode iron-binding proteins. It has a hairpin structure and is recognized by trans-acting proteins known as iron-regulatory proteins." [PMID:3198610, PMID:8710843]	5741272	SOFA	SOFA	sequence	7	SO	biological_region	iron_responsive_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001182	"A regulatory sequence found in the 5' and 3' UTRs of many mRNAs which encode iron-binding proteins. It has a hairpin structure and is recognized by trans-acting proteins known as iron-regulatory proteins." [PMID:3198610, PMID:8710843]	6550276	SOFA	SOFA	sequence	9	SO	sequence_feature	iron_responsive_element
SO:0001183	\N	\N	"An attribute describing a sequence composed of nucleobases bound to a morpholino backbone. A morpholino backbone consists of morpholine (CHEBI:34856) rings connected by phosphorodiamidate linkages." [RSC:cb]	SO:0001183	"An attribute describing a sequence composed of nucleobases bound to a morpholino backbone. A morpholino backbone consists of morpholine (CHEBI:34856) rings connected by phosphorodiamidate linkages." [RSC:cb]	46060	\N	\N	sequence	0	SO	morpholino_backbone	morpholino_backbone
SO:0000348	SO:0001183	\N	"An attribute describing a sequence consisting of nucleobases bound to repeating units. The forms found in nature are deoxyribonucleic acid (DNA), where the repeating units are 2-deoxy-D-ribose rings connected to a phosphate backbone, and ribonucleic acid (RNA), where the repeating units are D-ribose rings connected to a phosphate backbone." [CHEBI:33696, RSC:cb]	SO:0001183	"An attribute describing a sequence composed of nucleobases bound to a morpholino backbone. A morpholino backbone consists of morpholine (CHEBI:34856) rings connected by phosphorodiamidate linkages." [RSC:cb]	490791	\N	\N	sequence	1	SO	nucleic_acid	morpholino_backbone
SO:0000443	SO:0000348	\N	"An attribute to describe the kind of biological sequence." [SO:ke]	SO:0001183	"An attribute describing a sequence composed of nucleobases bound to a morpholino backbone. A morpholino backbone consists of morpholine (CHEBI:34856) rings connected by phosphorodiamidate linkages." [RSC:cb]	1073347	\N	\N	sequence	2	SO	polymer_attribute	morpholino_backbone
SO:0000400	SO:0000443	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001183	"An attribute describing a sequence composed of nucleobases bound to a morpholino backbone. A morpholino backbone consists of morpholine (CHEBI:34856) rings connected by phosphorodiamidate linkages." [RSC:cb]	1904413	\N	\N	sequence	3	SO	sequence_attribute	morpholino_backbone
SO:0001184	\N	\N	"An attribute describing a sequence composed of peptide nucleic acid (CHEBI:48021), a chemical consisting of nucleobases bound to a backbone composed of repeating N-(2-aminoethyl)-glycine units linked by peptide bonds. The purine and pyrimidine bases are linked to the backbone by methylene carbonyl bonds." [RSC:cb]	SO:0001184	"An attribute describing a sequence composed of peptide nucleic acid (CHEBI:48021), a chemical consisting of nucleobases bound to a backbone composed of repeating N-(2-aminoethyl)-glycine units linked by peptide bonds. The purine and pyrimidine bases are linked to the backbone by methylene carbonyl bonds." [RSC:cb]	46061	\N	\N	sequence	0	SO	PNA	PNA
SO:0000348	SO:0001184	\N	"An attribute describing a sequence consisting of nucleobases bound to repeating units. The forms found in nature are deoxyribonucleic acid (DNA), where the repeating units are 2-deoxy-D-ribose rings connected to a phosphate backbone, and ribonucleic acid (RNA), where the repeating units are D-ribose rings connected to a phosphate backbone." [CHEBI:33696, RSC:cb]	SO:0001184	"An attribute describing a sequence composed of peptide nucleic acid (CHEBI:48021), a chemical consisting of nucleobases bound to a backbone composed of repeating N-(2-aminoethyl)-glycine units linked by peptide bonds. The purine and pyrimidine bases are linked to the backbone by methylene carbonyl bonds." [RSC:cb]	490792	\N	\N	sequence	1	SO	nucleic_acid	PNA
SO:0000443	SO:0000348	\N	"An attribute to describe the kind of biological sequence." [SO:ke]	SO:0001184	"An attribute describing a sequence composed of peptide nucleic acid (CHEBI:48021), a chemical consisting of nucleobases bound to a backbone composed of repeating N-(2-aminoethyl)-glycine units linked by peptide bonds. The purine and pyrimidine bases are linked to the backbone by methylene carbonyl bonds." [RSC:cb]	1073348	\N	\N	sequence	2	SO	polymer_attribute	PNA
SO:0000400	SO:0000443	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001184	"An attribute describing a sequence composed of peptide nucleic acid (CHEBI:48021), a chemical consisting of nucleobases bound to a backbone composed of repeating N-(2-aminoethyl)-glycine units linked by peptide bonds. The purine and pyrimidine bases are linked to the backbone by methylene carbonyl bonds." [RSC:cb]	1904414	\N	\N	sequence	3	SO	sequence_attribute	PNA
SO:0001185	\N	\N	"An attribute describing the sequence of a transcript that has catalytic activity with or without an associated ribonucleoprotein." [RSC:cb]	SO:0001185	"An attribute describing the sequence of a transcript that has catalytic activity with or without an associated ribonucleoprotein." [RSC:cb]	46062	\N	\N	sequence	0	SO	enzymatic	enzymatic
SO:0000733	SO:0001185	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001185	"An attribute describing the sequence of a transcript that has catalytic activity with or without an associated ribonucleoprotein." [RSC:cb]	490793	\N	\N	sequence	1	SO	feature_attribute	enzymatic
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001185	"An attribute describing the sequence of a transcript that has catalytic activity with or without an associated ribonucleoprotein." [RSC:cb]	1073349	\N	\N	sequence	2	SO	sequence_attribute	enzymatic
SO:0001186	\N	\N	"An attribute describing the sequence of a transcript that has catalytic activity even without an associated ribonucleoprotein." [RSC:cb]	SO:0001186	"An attribute describing the sequence of a transcript that has catalytic activity even without an associated ribonucleoprotein." [RSC:cb]	46063	\N	\N	sequence	0	SO	ribozymic	ribozymic
SO:0001185	SO:0001186	\N	"An attribute describing the sequence of a transcript that has catalytic activity with or without an associated ribonucleoprotein." [RSC:cb]	SO:0001186	"An attribute describing the sequence of a transcript that has catalytic activity even without an associated ribonucleoprotein." [RSC:cb]	490794	\N	\N	sequence	1	SO	enzymatic	ribozymic
SO:0000733	SO:0001185	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001186	"An attribute describing the sequence of a transcript that has catalytic activity even without an associated ribonucleoprotein." [RSC:cb]	1073350	\N	\N	sequence	2	SO	feature_attribute	ribozymic
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001186	"An attribute describing the sequence of a transcript that has catalytic activity even without an associated ribonucleoprotein." [RSC:cb]	1904415	\N	\N	sequence	3	SO	sequence_attribute	ribozymic
SO:0001187	\N	\N	"A snoRNA that specifies the site of pseudouridylation in an RNA molecule by base pairing with a short sequence around the target residue." [GOC:mah, PMID:12457565]	SO:0001187	"A snoRNA that specifies the site of pseudouridylation in an RNA molecule by base pairing with a short sequence around the target residue." [GOC:mah, PMID:12457565]	46064	\N	\N	sequence	0	SO	pseudouridylation_guide_snoRNA	pseudouridylation_guide_snoRNA
SO:0000594	SO:0001187	\N	"Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains." [http://www.bio.umass.edu/biochem/rna-sequence/Yeast_snoRNA_Database/snoRNA_DataBase.html]	SO:0001187	"A snoRNA that specifies the site of pseudouridylation in an RNA molecule by base pairing with a short sequence around the target residue." [GOC:mah, PMID:12457565]	490795	\N	\N	sequence	1	SO	H_ACA_box_snoRNA	pseudouridylation_guide_snoRNA
SO:0000275	SO:0000594	\N	"A snoRNA (small nucleolar RNA) is any one of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA." [GOC:kgc]	SO:0001187	"A snoRNA that specifies the site of pseudouridylation in an RNA molecule by base pairing with a short sequence around the target residue." [GOC:mah, PMID:12457565]	1073351	\N	SOFA	sequence	2	SO	snoRNA	pseudouridylation_guide_snoRNA
SO:0000655	SO:0000275	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0001187	"A snoRNA that specifies the site of pseudouridylation in an RNA molecule by base pairing with a short sequence around the target residue." [GOC:mah, PMID:12457565]	1904416	SOFA	SOFA	sequence	3	SO	ncRNA	pseudouridylation_guide_snoRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001187	"A snoRNA that specifies the site of pseudouridylation in an RNA molecule by base pairing with a short sequence around the target residue." [GOC:mah, PMID:12457565]	2928857	SOFA	SOFA	sequence	4	SO	mature_transcript	pseudouridylation_guide_snoRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001187	"A snoRNA that specifies the site of pseudouridylation in an RNA molecule by base pairing with a short sequence around the target residue." [GOC:mah, PMID:12457565]	4002091	SOFA	SOFA	sequence	5	SO	transcript	pseudouridylation_guide_snoRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001187	"A snoRNA that specifies the site of pseudouridylation in an RNA molecule by base pairing with a short sequence around the target residue." [GOC:mah, PMID:12457565]	4966496	SOFA	SOFA	sequence	6	SO	gene_member_region	pseudouridylation_guide_snoRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001187	"A snoRNA that specifies the site of pseudouridylation in an RNA molecule by base pairing with a short sequence around the target residue." [GOC:mah, PMID:12457565]	5741274	SOFA	SOFA	sequence	7	SO	biological_region	pseudouridylation_guide_snoRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001187	"A snoRNA that specifies the site of pseudouridylation in an RNA molecule by base pairing with a short sequence around the target residue." [GOC:mah, PMID:12457565]	6311097	SOFA	SOFA	sequence	8	SO	region	pseudouridylation_guide_snoRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001187	"A snoRNA that specifies the site of pseudouridylation in an RNA molecule by base pairing with a short sequence around the target residue." [GOC:mah, PMID:12457565]	6699366	SOFA	SOFA	sequence	9	SO	sequence_feature	pseudouridylation_guide_snoRNA
SO:0001188	\N	\N	"An attribute describing a sequence consisting of nucleobases attached to a repeating unit made of 'locked' deoxyribose rings connected to a phosphate backbone. The deoxyribose unit's conformation is 'locked' by a 2'-C,4'-C-oxymethylene link." [CHEBI:48010]	SO:0001188	"An attribute describing a sequence consisting of nucleobases attached to a repeating unit made of 'locked' deoxyribose rings connected to a phosphate backbone. The deoxyribose unit's conformation is 'locked' by a 2'-C,4'-C-oxymethylene link." [CHEBI:48010]	46065	\N	\N	sequence	0	SO	LNA	LNA
SO:0000348	SO:0001188	\N	"An attribute describing a sequence consisting of nucleobases bound to repeating units. The forms found in nature are deoxyribonucleic acid (DNA), where the repeating units are 2-deoxy-D-ribose rings connected to a phosphate backbone, and ribonucleic acid (RNA), where the repeating units are D-ribose rings connected to a phosphate backbone." [CHEBI:33696, RSC:cb]	SO:0001188	"An attribute describing a sequence consisting of nucleobases attached to a repeating unit made of 'locked' deoxyribose rings connected to a phosphate backbone. The deoxyribose unit's conformation is 'locked' by a 2'-C,4'-C-oxymethylene link." [CHEBI:48010]	490796	\N	\N	sequence	1	SO	nucleic_acid	LNA
SO:0000443	SO:0000348	\N	"An attribute to describe the kind of biological sequence." [SO:ke]	SO:0001188	"An attribute describing a sequence consisting of nucleobases attached to a repeating unit made of 'locked' deoxyribose rings connected to a phosphate backbone. The deoxyribose unit's conformation is 'locked' by a 2'-C,4'-C-oxymethylene link." [CHEBI:48010]	1073352	\N	\N	sequence	2	SO	polymer_attribute	LNA
SO:0000400	SO:0000443	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001188	"An attribute describing a sequence consisting of nucleobases attached to a repeating unit made of 'locked' deoxyribose rings connected to a phosphate backbone. The deoxyribose unit's conformation is 'locked' by a 2'-C,4'-C-oxymethylene link." [CHEBI:48010]	1904417	\N	\N	sequence	3	SO	sequence_attribute	LNA
SO:0001189	\N	\N	"An oligo composed of LNA residues." [RSC:cb]	SO:0001189	"An oligo composed of LNA residues." [RSC:cb]	46066	\N	\N	sequence	0	SO	LNA_oligo	LNA_oligo
SO:0001247	SO:0001189	\N	"An oligo composed of synthetic nucleotides." [SO:ke]	SO:0001189	"An oligo composed of LNA residues." [RSC:cb]	490797	\N	\N	sequence	1	SO	synthetic_oligo	LNA_oligo
SO:0000696	SO:0001247	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0001189	"An oligo composed of LNA residues." [RSC:cb]	1073353	\N	SOFA	sequence	2	SO	oligo	LNA_oligo
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0001189	"An oligo composed of LNA residues." [RSC:cb]	1904418	SOFA	SOFA	sequence	3	SO	reagent	LNA_oligo
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001189	"An oligo composed of LNA residues." [RSC:cb]	2928858	SOFA	SOFA	sequence	4	SO	biomaterial_region	LNA_oligo
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001189	"An oligo composed of LNA residues." [RSC:cb]	4002092	SOFA	SOFA	sequence	5	SO	region	LNA_oligo
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001189	"An oligo composed of LNA residues." [RSC:cb]	4966497	SOFA	SOFA	sequence	6	SO	sequence_feature	LNA_oligo
SO:0001190	\N	\N	"An attribute describing a sequence consisting of nucleobases attached to a repeating unit made of threose rings connected to a phosphate backbone." [CHEBI:48019]	SO:0001190	"An attribute describing a sequence consisting of nucleobases attached to a repeating unit made of threose rings connected to a phosphate backbone." [CHEBI:48019]	46067	\N	\N	sequence	0	SO	TNA	TNA
SO:0000348	SO:0001190	\N	"An attribute describing a sequence consisting of nucleobases bound to repeating units. The forms found in nature are deoxyribonucleic acid (DNA), where the repeating units are 2-deoxy-D-ribose rings connected to a phosphate backbone, and ribonucleic acid (RNA), where the repeating units are D-ribose rings connected to a phosphate backbone." [CHEBI:33696, RSC:cb]	SO:0001190	"An attribute describing a sequence consisting of nucleobases attached to a repeating unit made of threose rings connected to a phosphate backbone." [CHEBI:48019]	490798	\N	\N	sequence	1	SO	nucleic_acid	TNA
SO:0000443	SO:0000348	\N	"An attribute to describe the kind of biological sequence." [SO:ke]	SO:0001190	"An attribute describing a sequence consisting of nucleobases attached to a repeating unit made of threose rings connected to a phosphate backbone." [CHEBI:48019]	1073354	\N	\N	sequence	2	SO	polymer_attribute	TNA
SO:0000400	SO:0000443	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001190	"An attribute describing a sequence consisting of nucleobases attached to a repeating unit made of threose rings connected to a phosphate backbone." [CHEBI:48019]	1904419	\N	\N	sequence	3	SO	sequence_attribute	TNA
SO:0001191	\N	\N	"An oligo composed of TNA residues." [RSC:cb]	SO:0001191	"An oligo composed of TNA residues." [RSC:cb]	46068	\N	\N	sequence	0	SO	TNA_oligo	TNA_oligo
SO:0001247	SO:0001191	\N	"An oligo composed of synthetic nucleotides." [SO:ke]	SO:0001191	"An oligo composed of TNA residues." [RSC:cb]	490799	\N	\N	sequence	1	SO	synthetic_oligo	TNA_oligo
SO:0000696	SO:0001247	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0001191	"An oligo composed of TNA residues." [RSC:cb]	1073355	\N	SOFA	sequence	2	SO	oligo	TNA_oligo
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0001191	"An oligo composed of TNA residues." [RSC:cb]	1904420	SOFA	SOFA	sequence	3	SO	reagent	TNA_oligo
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001191	"An oligo composed of TNA residues." [RSC:cb]	2928859	SOFA	SOFA	sequence	4	SO	biomaterial_region	TNA_oligo
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001191	"An oligo composed of TNA residues." [RSC:cb]	4002093	SOFA	SOFA	sequence	5	SO	region	TNA_oligo
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001191	"An oligo composed of TNA residues." [RSC:cb]	4966498	SOFA	SOFA	sequence	6	SO	sequence_feature	TNA_oligo
SO:0001192	\N	\N	"An attribute describing a sequence consisting of nucleobases attached to a repeating unit made of an acyclic three-carbon propylene glycol connected to a phosphate backbone. It has two enantiomeric forms, (R)-GNA and (S)-GNA." [CHEBI:48015]	SO:0001192	"An attribute describing a sequence consisting of nucleobases attached to a repeating unit made of an acyclic three-carbon propylene glycol connected to a phosphate backbone. It has two enantiomeric forms, (R)-GNA and (S)-GNA." [CHEBI:48015]	46069	\N	\N	sequence	0	SO	GNA	GNA
SO:0000348	SO:0001192	\N	"An attribute describing a sequence consisting of nucleobases bound to repeating units. The forms found in nature are deoxyribonucleic acid (DNA), where the repeating units are 2-deoxy-D-ribose rings connected to a phosphate backbone, and ribonucleic acid (RNA), where the repeating units are D-ribose rings connected to a phosphate backbone." [CHEBI:33696, RSC:cb]	SO:0001192	"An attribute describing a sequence consisting of nucleobases attached to a repeating unit made of an acyclic three-carbon propylene glycol connected to a phosphate backbone. It has two enantiomeric forms, (R)-GNA and (S)-GNA." [CHEBI:48015]	490800	\N	\N	sequence	1	SO	nucleic_acid	GNA
SO:0000443	SO:0000348	\N	"An attribute to describe the kind of biological sequence." [SO:ke]	SO:0001192	"An attribute describing a sequence consisting of nucleobases attached to a repeating unit made of an acyclic three-carbon propylene glycol connected to a phosphate backbone. It has two enantiomeric forms, (R)-GNA and (S)-GNA." [CHEBI:48015]	1073356	\N	\N	sequence	2	SO	polymer_attribute	GNA
SO:0000400	SO:0000443	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001192	"An attribute describing a sequence consisting of nucleobases attached to a repeating unit made of an acyclic three-carbon propylene glycol connected to a phosphate backbone. It has two enantiomeric forms, (R)-GNA and (S)-GNA." [CHEBI:48015]	1904421	\N	\N	sequence	3	SO	sequence_attribute	GNA
SO:0001193	\N	\N	"An oligo composed of GNA residues." [RSC:cb]	SO:0001193	"An oligo composed of GNA residues." [RSC:cb]	46070	\N	\N	sequence	0	SO	GNA_oligo	GNA_oligo
SO:0001247	SO:0001193	\N	"An oligo composed of synthetic nucleotides." [SO:ke]	SO:0001193	"An oligo composed of GNA residues." [RSC:cb]	490801	\N	\N	sequence	1	SO	synthetic_oligo	GNA_oligo
SO:0000696	SO:0001247	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0001193	"An oligo composed of GNA residues." [RSC:cb]	1073357	\N	SOFA	sequence	2	SO	oligo	GNA_oligo
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0001193	"An oligo composed of GNA residues." [RSC:cb]	1904422	SOFA	SOFA	sequence	3	SO	reagent	GNA_oligo
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001193	"An oligo composed of GNA residues." [RSC:cb]	2928860	SOFA	SOFA	sequence	4	SO	biomaterial_region	GNA_oligo
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001193	"An oligo composed of GNA residues." [RSC:cb]	4002094	SOFA	SOFA	sequence	5	SO	region	GNA_oligo
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001193	"An oligo composed of GNA residues." [RSC:cb]	4966499	SOFA	SOFA	sequence	6	SO	sequence_feature	GNA_oligo
SO:0001194	\N	\N	"An attribute describing a GNA sequence in the (R)-GNA enantiomer." [CHEBI:48016]	SO:0001194	"An attribute describing a GNA sequence in the (R)-GNA enantiomer." [CHEBI:48016]	46071	\N	\N	sequence	0	SO	R_GNA	R_GNA
SO:0001192	SO:0001194	\N	"An attribute describing a sequence consisting of nucleobases attached to a repeating unit made of an acyclic three-carbon propylene glycol connected to a phosphate backbone. It has two enantiomeric forms, (R)-GNA and (S)-GNA." [CHEBI:48015]	SO:0001194	"An attribute describing a GNA sequence in the (R)-GNA enantiomer." [CHEBI:48016]	490802	\N	\N	sequence	1	SO	GNA	R_GNA
SO:0000348	SO:0001192	\N	"An attribute describing a sequence consisting of nucleobases bound to repeating units. The forms found in nature are deoxyribonucleic acid (DNA), where the repeating units are 2-deoxy-D-ribose rings connected to a phosphate backbone, and ribonucleic acid (RNA), where the repeating units are D-ribose rings connected to a phosphate backbone." [CHEBI:33696, RSC:cb]	SO:0001194	"An attribute describing a GNA sequence in the (R)-GNA enantiomer." [CHEBI:48016]	1073358	\N	\N	sequence	2	SO	nucleic_acid	R_GNA
SO:0000443	SO:0000348	\N	"An attribute to describe the kind of biological sequence." [SO:ke]	SO:0001194	"An attribute describing a GNA sequence in the (R)-GNA enantiomer." [CHEBI:48016]	1904423	\N	\N	sequence	3	SO	polymer_attribute	R_GNA
SO:0000400	SO:0000443	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001194	"An attribute describing a GNA sequence in the (R)-GNA enantiomer." [CHEBI:48016]	2928861	\N	\N	sequence	4	SO	sequence_attribute	R_GNA
SO:0001195	\N	\N	"An oligo composed of (R)-GNA residues." [RSC:cb]	SO:0001195	"An oligo composed of (R)-GNA residues." [RSC:cb]	46072	\N	\N	sequence	0	SO	R_GNA_oligo	R_GNA_oligo
SO:0001193	SO:0001195	\N	"An oligo composed of GNA residues." [RSC:cb]	SO:0001195	"An oligo composed of (R)-GNA residues." [RSC:cb]	490803	\N	\N	sequence	1	SO	GNA_oligo	R_GNA_oligo
SO:0001247	SO:0001193	\N	"An oligo composed of synthetic nucleotides." [SO:ke]	SO:0001195	"An oligo composed of (R)-GNA residues." [RSC:cb]	1073359	\N	\N	sequence	2	SO	synthetic_oligo	R_GNA_oligo
SO:0000696	SO:0001247	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0001195	"An oligo composed of (R)-GNA residues." [RSC:cb]	1904424	\N	SOFA	sequence	3	SO	oligo	R_GNA_oligo
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0001195	"An oligo composed of (R)-GNA residues." [RSC:cb]	2928862	SOFA	SOFA	sequence	4	SO	reagent	R_GNA_oligo
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001195	"An oligo composed of (R)-GNA residues." [RSC:cb]	4002095	SOFA	SOFA	sequence	5	SO	biomaterial_region	R_GNA_oligo
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001195	"An oligo composed of (R)-GNA residues." [RSC:cb]	4966500	SOFA	SOFA	sequence	6	SO	region	R_GNA_oligo
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001195	"An oligo composed of (R)-GNA residues." [RSC:cb]	5741275	SOFA	SOFA	sequence	7	SO	sequence_feature	R_GNA_oligo
SO:0001196	\N	\N	"An attribute describing a GNA sequence in the (S)-GNA enantiomer." [CHEBI:48017]	SO:0001196	"An attribute describing a GNA sequence in the (S)-GNA enantiomer." [CHEBI:48017]	46073	\N	\N	sequence	0	SO	S_GNA	S_GNA
SO:0001192	SO:0001196	\N	"An attribute describing a sequence consisting of nucleobases attached to a repeating unit made of an acyclic three-carbon propylene glycol connected to a phosphate backbone. It has two enantiomeric forms, (R)-GNA and (S)-GNA." [CHEBI:48015]	SO:0001196	"An attribute describing a GNA sequence in the (S)-GNA enantiomer." [CHEBI:48017]	490804	\N	\N	sequence	1	SO	GNA	S_GNA
SO:0000348	SO:0001192	\N	"An attribute describing a sequence consisting of nucleobases bound to repeating units. The forms found in nature are deoxyribonucleic acid (DNA), where the repeating units are 2-deoxy-D-ribose rings connected to a phosphate backbone, and ribonucleic acid (RNA), where the repeating units are D-ribose rings connected to a phosphate backbone." [CHEBI:33696, RSC:cb]	SO:0001196	"An attribute describing a GNA sequence in the (S)-GNA enantiomer." [CHEBI:48017]	1073360	\N	\N	sequence	2	SO	nucleic_acid	S_GNA
SO:0000443	SO:0000348	\N	"An attribute to describe the kind of biological sequence." [SO:ke]	SO:0001196	"An attribute describing a GNA sequence in the (S)-GNA enantiomer." [CHEBI:48017]	1904425	\N	\N	sequence	3	SO	polymer_attribute	S_GNA
SO:0000400	SO:0000443	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001196	"An attribute describing a GNA sequence in the (S)-GNA enantiomer." [CHEBI:48017]	2928863	\N	\N	sequence	4	SO	sequence_attribute	S_GNA
SO:0001197	\N	\N	"An oligo composed of (S)-GNA residues." [RSC:cb]	SO:0001197	"An oligo composed of (S)-GNA residues." [RSC:cb]	46074	\N	\N	sequence	0	SO	S_GNA_oligo	S_GNA_oligo
SO:0001193	SO:0001197	\N	"An oligo composed of GNA residues." [RSC:cb]	SO:0001197	"An oligo composed of (S)-GNA residues." [RSC:cb]	490805	\N	\N	sequence	1	SO	GNA_oligo	S_GNA_oligo
SO:0001247	SO:0001193	\N	"An oligo composed of synthetic nucleotides." [SO:ke]	SO:0001197	"An oligo composed of (S)-GNA residues." [RSC:cb]	1073361	\N	\N	sequence	2	SO	synthetic_oligo	S_GNA_oligo
SO:0000696	SO:0001247	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0001197	"An oligo composed of (S)-GNA residues." [RSC:cb]	1904426	\N	SOFA	sequence	3	SO	oligo	S_GNA_oligo
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0001197	"An oligo composed of (S)-GNA residues." [RSC:cb]	2928864	SOFA	SOFA	sequence	4	SO	reagent	S_GNA_oligo
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001197	"An oligo composed of (S)-GNA residues." [RSC:cb]	4002096	SOFA	SOFA	sequence	5	SO	biomaterial_region	S_GNA_oligo
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001197	"An oligo composed of (S)-GNA residues." [RSC:cb]	4966501	SOFA	SOFA	sequence	6	SO	region	S_GNA_oligo
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001197	"An oligo composed of (S)-GNA residues." [RSC:cb]	5741276	SOFA	SOFA	sequence	7	SO	sequence_feature	S_GNA_oligo
SO:0001198	\N	\N	"A ds_DNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as double stranded DNA." [SO:ke]	SO:0001198	"A ds_DNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as double stranded DNA." [SO:ke]	46075	\N	\N	sequence	0	SO	ds_DNA_viral_sequence	ds_DNA_viral_sequence
SO:0001041	SO:0001198	\N	"The region of nucleotide sequence of a virus, a submicroscopic particle that replicates by infecting a host cell." [SO:ke]	SO:0001198	"A ds_DNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as double stranded DNA." [SO:ke]	490806	\N	\N	sequence	1	SO	viral_sequence	ds_DNA_viral_sequence
SO:0001038	SO:0001041	\N	"An MGE that is not integrated into the host chromosome." [SO:ke]	SO:0001198	"A ds_DNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as double stranded DNA." [SO:ke]	1073362	\N	\N	sequence	2	SO	extrachromosomal_mobile_genetic_element	ds_DNA_viral_sequence
SO:0001235	SO:0001041	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001198	"A ds_DNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as double stranded DNA." [SO:ke]	1073363	\N	SOFA	sequence	2	SO	replicon	ds_DNA_viral_sequence
SO:0001037	SO:0001038	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0001198	"A ds_DNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as double stranded DNA." [SO:ke]	1904427	\N	SOFA	sequence	3	SO	mobile_genetic_element	ds_DNA_viral_sequence
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001198	"A ds_DNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as double stranded DNA." [SO:ke]	1904428	SOFA	SOFA	sequence	3	SO	biological_region	ds_DNA_viral_sequence
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001198	"A ds_DNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as double stranded DNA." [SO:ke]	2928865	SOFA	SOFA	sequence	4	SO	biological_region	ds_DNA_viral_sequence
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001198	"A ds_DNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as double stranded DNA." [SO:ke]	4002097	SOFA	SOFA	sequence	5	SO	region	ds_DNA_viral_sequence
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001198	"A ds_DNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as double stranded DNA." [SO:ke]	4385809	SOFA	SOFA	sequence	6	SO	sequence_feature	ds_DNA_viral_sequence
SO:0001199	\N	\N	"A ss_RNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as single stranded RNA." [SO:ke]	SO:0001199	"A ss_RNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as single stranded RNA." [SO:ke]	46076	\N	\N	sequence	0	SO	ss_RNA_viral_sequence	ss_RNA_viral_sequence
SO:0001041	SO:0001199	\N	"The region of nucleotide sequence of a virus, a submicroscopic particle that replicates by infecting a host cell." [SO:ke]	SO:0001199	"A ss_RNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as single stranded RNA." [SO:ke]	490807	\N	\N	sequence	1	SO	viral_sequence	ss_RNA_viral_sequence
SO:0001038	SO:0001041	\N	"An MGE that is not integrated into the host chromosome." [SO:ke]	SO:0001199	"A ss_RNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as single stranded RNA." [SO:ke]	1073364	\N	\N	sequence	2	SO	extrachromosomal_mobile_genetic_element	ss_RNA_viral_sequence
SO:0001235	SO:0001041	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001199	"A ss_RNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as single stranded RNA." [SO:ke]	1073365	\N	SOFA	sequence	2	SO	replicon	ss_RNA_viral_sequence
SO:0001037	SO:0001038	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0001199	"A ss_RNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as single stranded RNA." [SO:ke]	1904429	\N	SOFA	sequence	3	SO	mobile_genetic_element	ss_RNA_viral_sequence
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001199	"A ss_RNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as single stranded RNA." [SO:ke]	1904430	SOFA	SOFA	sequence	3	SO	biological_region	ss_RNA_viral_sequence
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001199	"A ss_RNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as single stranded RNA." [SO:ke]	2928867	SOFA	SOFA	sequence	4	SO	biological_region	ss_RNA_viral_sequence
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001199	"A ss_RNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as single stranded RNA." [SO:ke]	4002099	SOFA	SOFA	sequence	5	SO	region	ss_RNA_viral_sequence
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001199	"A ss_RNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as single stranded RNA." [SO:ke]	4385810	SOFA	SOFA	sequence	6	SO	sequence_feature	ss_RNA_viral_sequence
SO:0001200	\N	\N	"A negative_sense_RNA_viral_sequence is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus that is complementary to mRNA and must be converted to positive sense RNA by RNA polymerase before translation." [SO:ke]	SO:0001200	"A negative_sense_RNA_viral_sequence is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus that is complementary to mRNA and must be converted to positive sense RNA by RNA polymerase before translation." [SO:ke]	46077	\N	\N	sequence	0	SO	negative_sense_ssRNA_viral_sequence	negative_sense_ssRNA_viral_sequence
SO:0001199	SO:0001200	\N	"A ss_RNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as single stranded RNA." [SO:ke]	SO:0001200	"A negative_sense_RNA_viral_sequence is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus that is complementary to mRNA and must be converted to positive sense RNA by RNA polymerase before translation." [SO:ke]	490808	\N	\N	sequence	1	SO	ss_RNA_viral_sequence	negative_sense_ssRNA_viral_sequence
SO:0001041	SO:0001199	\N	"The region of nucleotide sequence of a virus, a submicroscopic particle that replicates by infecting a host cell." [SO:ke]	SO:0001200	"A negative_sense_RNA_viral_sequence is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus that is complementary to mRNA and must be converted to positive sense RNA by RNA polymerase before translation." [SO:ke]	1073366	\N	\N	sequence	2	SO	viral_sequence	negative_sense_ssRNA_viral_sequence
SO:0001038	SO:0001041	\N	"An MGE that is not integrated into the host chromosome." [SO:ke]	SO:0001200	"A negative_sense_RNA_viral_sequence is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus that is complementary to mRNA and must be converted to positive sense RNA by RNA polymerase before translation." [SO:ke]	1904431	\N	\N	sequence	3	SO	extrachromosomal_mobile_genetic_element	negative_sense_ssRNA_viral_sequence
SO:0001235	SO:0001041	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001200	"A negative_sense_RNA_viral_sequence is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus that is complementary to mRNA and must be converted to positive sense RNA by RNA polymerase before translation." [SO:ke]	1904432	\N	SOFA	sequence	3	SO	replicon	negative_sense_ssRNA_viral_sequence
SO:0001037	SO:0001038	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0001200	"A negative_sense_RNA_viral_sequence is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus that is complementary to mRNA and must be converted to positive sense RNA by RNA polymerase before translation." [SO:ke]	2928869	\N	SOFA	sequence	4	SO	mobile_genetic_element	negative_sense_ssRNA_viral_sequence
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001200	"A negative_sense_RNA_viral_sequence is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus that is complementary to mRNA and must be converted to positive sense RNA by RNA polymerase before translation." [SO:ke]	2928870	SOFA	SOFA	sequence	4	SO	biological_region	negative_sense_ssRNA_viral_sequence
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001200	"A negative_sense_RNA_viral_sequence is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus that is complementary to mRNA and must be converted to positive sense RNA by RNA polymerase before translation." [SO:ke]	4002101	SOFA	SOFA	sequence	5	SO	biological_region	negative_sense_ssRNA_viral_sequence
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001200	"A negative_sense_RNA_viral_sequence is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus that is complementary to mRNA and must be converted to positive sense RNA by RNA polymerase before translation." [SO:ke]	4966502	SOFA	SOFA	sequence	6	SO	region	negative_sense_ssRNA_viral_sequence
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001200	"A negative_sense_RNA_viral_sequence is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus that is complementary to mRNA and must be converted to positive sense RNA by RNA polymerase before translation." [SO:ke]	5407466	SOFA	SOFA	sequence	7	SO	sequence_feature	negative_sense_ssRNA_viral_sequence
SO:0001201	\N	\N	"A positive_sense_RNA_viral_sequence is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus that can be immediately translated by the host." [SO:ke]	SO:0001201	"A positive_sense_RNA_viral_sequence is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus that can be immediately translated by the host." [SO:ke]	46078	\N	\N	sequence	0	SO	positive_sense_ssRNA_viral_sequence	positive_sense_ssRNA_viral_sequence
SO:0001199	SO:0001201	\N	"A ss_RNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as single stranded RNA." [SO:ke]	SO:0001201	"A positive_sense_RNA_viral_sequence is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus that can be immediately translated by the host." [SO:ke]	490809	\N	\N	sequence	1	SO	ss_RNA_viral_sequence	positive_sense_ssRNA_viral_sequence
SO:0001041	SO:0001199	\N	"The region of nucleotide sequence of a virus, a submicroscopic particle that replicates by infecting a host cell." [SO:ke]	SO:0001201	"A positive_sense_RNA_viral_sequence is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus that can be immediately translated by the host." [SO:ke]	1073367	\N	\N	sequence	2	SO	viral_sequence	positive_sense_ssRNA_viral_sequence
SO:0001038	SO:0001041	\N	"An MGE that is not integrated into the host chromosome." [SO:ke]	SO:0001201	"A positive_sense_RNA_viral_sequence is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus that can be immediately translated by the host." [SO:ke]	1904433	\N	\N	sequence	3	SO	extrachromosomal_mobile_genetic_element	positive_sense_ssRNA_viral_sequence
SO:0001235	SO:0001041	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001201	"A positive_sense_RNA_viral_sequence is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus that can be immediately translated by the host." [SO:ke]	1904434	\N	SOFA	sequence	3	SO	replicon	positive_sense_ssRNA_viral_sequence
SO:0001037	SO:0001038	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0001201	"A positive_sense_RNA_viral_sequence is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus that can be immediately translated by the host." [SO:ke]	2928871	\N	SOFA	sequence	4	SO	mobile_genetic_element	positive_sense_ssRNA_viral_sequence
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001201	"A positive_sense_RNA_viral_sequence is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus that can be immediately translated by the host." [SO:ke]	2928872	SOFA	SOFA	sequence	4	SO	biological_region	positive_sense_ssRNA_viral_sequence
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001201	"A positive_sense_RNA_viral_sequence is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus that can be immediately translated by the host." [SO:ke]	4002103	SOFA	SOFA	sequence	5	SO	biological_region	positive_sense_ssRNA_viral_sequence
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001201	"A positive_sense_RNA_viral_sequence is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus that can be immediately translated by the host." [SO:ke]	4966504	SOFA	SOFA	sequence	6	SO	region	positive_sense_ssRNA_viral_sequence
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001201	"A positive_sense_RNA_viral_sequence is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus that can be immediately translated by the host." [SO:ke]	5407467	SOFA	SOFA	sequence	7	SO	sequence_feature	positive_sense_ssRNA_viral_sequence
SO:0001202	\N	\N	"A ambisense_RNA_virus is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus with both messenger and anti messenger polarity." [SO:ke]	SO:0001202	"A ambisense_RNA_virus is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus with both messenger and anti messenger polarity." [SO:ke]	46079	\N	\N	sequence	0	SO	ambisense_ssRNA_viral_sequence	ambisense_ssRNA_viral_sequence
SO:0001199	SO:0001202	\N	"A ss_RNA_viral_sequence is a viral_sequence that is the sequence of a virus that exists as single stranded RNA." [SO:ke]	SO:0001202	"A ambisense_RNA_virus is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus with both messenger and anti messenger polarity." [SO:ke]	490810	\N	\N	sequence	1	SO	ss_RNA_viral_sequence	ambisense_ssRNA_viral_sequence
SO:0001041	SO:0001199	\N	"The region of nucleotide sequence of a virus, a submicroscopic particle that replicates by infecting a host cell." [SO:ke]	SO:0001202	"A ambisense_RNA_virus is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus with both messenger and anti messenger polarity." [SO:ke]	1073368	\N	\N	sequence	2	SO	viral_sequence	ambisense_ssRNA_viral_sequence
SO:0001038	SO:0001041	\N	"An MGE that is not integrated into the host chromosome." [SO:ke]	SO:0001202	"A ambisense_RNA_virus is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus with both messenger and anti messenger polarity." [SO:ke]	1904435	\N	\N	sequence	3	SO	extrachromosomal_mobile_genetic_element	ambisense_ssRNA_viral_sequence
SO:0001235	SO:0001041	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001202	"A ambisense_RNA_virus is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus with both messenger and anti messenger polarity." [SO:ke]	1904436	\N	SOFA	sequence	3	SO	replicon	ambisense_ssRNA_viral_sequence
SO:0001037	SO:0001038	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0001202	"A ambisense_RNA_virus is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus with both messenger and anti messenger polarity." [SO:ke]	2928873	\N	SOFA	sequence	4	SO	mobile_genetic_element	ambisense_ssRNA_viral_sequence
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001202	"A ambisense_RNA_virus is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus with both messenger and anti messenger polarity." [SO:ke]	2928874	SOFA	SOFA	sequence	4	SO	biological_region	ambisense_ssRNA_viral_sequence
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001202	"A ambisense_RNA_virus is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus with both messenger and anti messenger polarity." [SO:ke]	4002105	SOFA	SOFA	sequence	5	SO	biological_region	ambisense_ssRNA_viral_sequence
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001202	"A ambisense_RNA_virus is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus with both messenger and anti messenger polarity." [SO:ke]	4966506	SOFA	SOFA	sequence	6	SO	region	ambisense_ssRNA_viral_sequence
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001202	"A ambisense_RNA_virus is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus with both messenger and anti messenger polarity." [SO:ke]	5407468	SOFA	SOFA	sequence	7	SO	sequence_feature	ambisense_ssRNA_viral_sequence
SO:0001203	\N	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001203	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	46080	\N	\N	sequence	0	SO	RNA_polymerase_promoter	RNA_polymerase_promoter
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001203	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	490811	\N	SOFA	sequence	1	SO	promoter	RNA_polymerase_promoter
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001203	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	1073369	SOFA	SOFA	sequence	2	SO	transcriptional_cis_regulatory_region	RNA_polymerase_promoter
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001203	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	1904437	SOFA	SOFA	sequence	3	SO	transcription_regulatory_region	RNA_polymerase_promoter
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001203	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	2928875	SOFA	SOFA	sequence	4	SO	regulatory_region	RNA_polymerase_promoter
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001203	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	4002107	SOFA	SOFA	sequence	5	SO	gene_member_region	RNA_polymerase_promoter
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001203	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	4966508	SOFA	SOFA	sequence	6	SO	biological_region	RNA_polymerase_promoter
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001203	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	5741277	SOFA	SOFA	sequence	7	SO	region	RNA_polymerase_promoter
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001203	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	6311098	SOFA	SOFA	sequence	8	SO	sequence_feature	RNA_polymerase_promoter
SO:0001204	\N	\N	"A region (DNA) to which Bacteriophage RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001204	"A region (DNA) to which Bacteriophage RNA polymerase binds, to begin transcription." [xenbase:jb]	46081	\N	\N	sequence	0	SO	Phage_RNA_Polymerase_Promoter	Phage_RNA_Polymerase_Promoter
SO:0001203	SO:0001204	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001204	"A region (DNA) to which Bacteriophage RNA polymerase binds, to begin transcription." [xenbase:jb]	490812	\N	\N	sequence	1	SO	RNA_polymerase_promoter	Phage_RNA_Polymerase_Promoter
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001204	"A region (DNA) to which Bacteriophage RNA polymerase binds, to begin transcription." [xenbase:jb]	1073370	\N	SOFA	sequence	2	SO	promoter	Phage_RNA_Polymerase_Promoter
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001204	"A region (DNA) to which Bacteriophage RNA polymerase binds, to begin transcription." [xenbase:jb]	1904438	SOFA	SOFA	sequence	3	SO	transcriptional_cis_regulatory_region	Phage_RNA_Polymerase_Promoter
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001204	"A region (DNA) to which Bacteriophage RNA polymerase binds, to begin transcription." [xenbase:jb]	2928876	SOFA	SOFA	sequence	4	SO	transcription_regulatory_region	Phage_RNA_Polymerase_Promoter
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001204	"A region (DNA) to which Bacteriophage RNA polymerase binds, to begin transcription." [xenbase:jb]	4002108	SOFA	SOFA	sequence	5	SO	regulatory_region	Phage_RNA_Polymerase_Promoter
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001204	"A region (DNA) to which Bacteriophage RNA polymerase binds, to begin transcription." [xenbase:jb]	4966509	SOFA	SOFA	sequence	6	SO	gene_member_region	Phage_RNA_Polymerase_Promoter
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001204	"A region (DNA) to which Bacteriophage RNA polymerase binds, to begin transcription." [xenbase:jb]	5741278	SOFA	SOFA	sequence	7	SO	biological_region	Phage_RNA_Polymerase_Promoter
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001204	"A region (DNA) to which Bacteriophage RNA polymerase binds, to begin transcription." [xenbase:jb]	6311099	SOFA	SOFA	sequence	8	SO	region	Phage_RNA_Polymerase_Promoter
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001204	"A region (DNA) to which Bacteriophage RNA polymerase binds, to begin transcription." [xenbase:jb]	6699367	SOFA	SOFA	sequence	9	SO	sequence_feature	Phage_RNA_Polymerase_Promoter
SO:0001205	\N	\N	"A region (DNA) to which the SP6 RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001205	"A region (DNA) to which the SP6 RNA polymerase binds, to begin transcription." [xenbase:jb]	46082	\N	\N	sequence	0	SO	SP6_RNA_Polymerase_Promoter	SP6_RNA_Polymerase_Promoter
SO:0001204	SO:0001205	\N	"A region (DNA) to which Bacteriophage RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001205	"A region (DNA) to which the SP6 RNA polymerase binds, to begin transcription." [xenbase:jb]	490813	\N	\N	sequence	1	SO	Phage_RNA_Polymerase_Promoter	SP6_RNA_Polymerase_Promoter
SO:0001203	SO:0001204	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001205	"A region (DNA) to which the SP6 RNA polymerase binds, to begin transcription." [xenbase:jb]	1073371	\N	\N	sequence	2	SO	RNA_polymerase_promoter	SP6_RNA_Polymerase_Promoter
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001205	"A region (DNA) to which the SP6 RNA polymerase binds, to begin transcription." [xenbase:jb]	1904439	\N	SOFA	sequence	3	SO	promoter	SP6_RNA_Polymerase_Promoter
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001205	"A region (DNA) to which the SP6 RNA polymerase binds, to begin transcription." [xenbase:jb]	2928877	SOFA	SOFA	sequence	4	SO	transcriptional_cis_regulatory_region	SP6_RNA_Polymerase_Promoter
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001205	"A region (DNA) to which the SP6 RNA polymerase binds, to begin transcription." [xenbase:jb]	4002109	SOFA	SOFA	sequence	5	SO	transcription_regulatory_region	SP6_RNA_Polymerase_Promoter
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001205	"A region (DNA) to which the SP6 RNA polymerase binds, to begin transcription." [xenbase:jb]	4966510	SOFA	SOFA	sequence	6	SO	regulatory_region	SP6_RNA_Polymerase_Promoter
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001205	"A region (DNA) to which the SP6 RNA polymerase binds, to begin transcription." [xenbase:jb]	5741279	SOFA	SOFA	sequence	7	SO	gene_member_region	SP6_RNA_Polymerase_Promoter
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001205	"A region (DNA) to which the SP6 RNA polymerase binds, to begin transcription." [xenbase:jb]	6311100	SOFA	SOFA	sequence	8	SO	biological_region	SP6_RNA_Polymerase_Promoter
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001205	"A region (DNA) to which the SP6 RNA polymerase binds, to begin transcription." [xenbase:jb]	6699368	SOFA	SOFA	sequence	9	SO	region	SP6_RNA_Polymerase_Promoter
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001205	"A region (DNA) to which the SP6 RNA polymerase binds, to begin transcription." [xenbase:jb]	6948088	SOFA	SOFA	sequence	10	SO	sequence_feature	SP6_RNA_Polymerase_Promoter
SO:0001206	\N	\N	"A DNA sequence to which the T3 RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001206	"A DNA sequence to which the T3 RNA polymerase binds, to begin transcription." [xenbase:jb]	46083	\N	\N	sequence	0	SO	T3_RNA_Polymerase_Promoter	T3_RNA_Polymerase_Promoter
SO:0001204	SO:0001206	\N	"A region (DNA) to which Bacteriophage RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001206	"A DNA sequence to which the T3 RNA polymerase binds, to begin transcription." [xenbase:jb]	490814	\N	\N	sequence	1	SO	Phage_RNA_Polymerase_Promoter	T3_RNA_Polymerase_Promoter
SO:0001203	SO:0001204	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001206	"A DNA sequence to which the T3 RNA polymerase binds, to begin transcription." [xenbase:jb]	1073372	\N	\N	sequence	2	SO	RNA_polymerase_promoter	T3_RNA_Polymerase_Promoter
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001206	"A DNA sequence to which the T3 RNA polymerase binds, to begin transcription." [xenbase:jb]	1904440	\N	SOFA	sequence	3	SO	promoter	T3_RNA_Polymerase_Promoter
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001206	"A DNA sequence to which the T3 RNA polymerase binds, to begin transcription." [xenbase:jb]	2928878	SOFA	SOFA	sequence	4	SO	transcriptional_cis_regulatory_region	T3_RNA_Polymerase_Promoter
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001206	"A DNA sequence to which the T3 RNA polymerase binds, to begin transcription." [xenbase:jb]	4002110	SOFA	SOFA	sequence	5	SO	transcription_regulatory_region	T3_RNA_Polymerase_Promoter
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001206	"A DNA sequence to which the T3 RNA polymerase binds, to begin transcription." [xenbase:jb]	4966511	SOFA	SOFA	sequence	6	SO	regulatory_region	T3_RNA_Polymerase_Promoter
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001206	"A DNA sequence to which the T3 RNA polymerase binds, to begin transcription." [xenbase:jb]	5741280	SOFA	SOFA	sequence	7	SO	gene_member_region	T3_RNA_Polymerase_Promoter
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001206	"A DNA sequence to which the T3 RNA polymerase binds, to begin transcription." [xenbase:jb]	6311101	SOFA	SOFA	sequence	8	SO	biological_region	T3_RNA_Polymerase_Promoter
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001206	"A DNA sequence to which the T3 RNA polymerase binds, to begin transcription." [xenbase:jb]	6699369	SOFA	SOFA	sequence	9	SO	region	T3_RNA_Polymerase_Promoter
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001206	"A DNA sequence to which the T3 RNA polymerase binds, to begin transcription." [xenbase:jb]	6948089	SOFA	SOFA	sequence	10	SO	sequence_feature	T3_RNA_Polymerase_Promoter
SO:0001207	\N	\N	"A region (DNA) to which the T7 RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001207	"A region (DNA) to which the T7 RNA polymerase binds, to begin transcription." [xenbase:jb]	46084	\N	\N	sequence	0	SO	T7_RNA_Polymerase_Promoter	T7_RNA_Polymerase_Promoter
SO:0001204	SO:0001207	\N	"A region (DNA) to which Bacteriophage RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001207	"A region (DNA) to which the T7 RNA polymerase binds, to begin transcription." [xenbase:jb]	490815	\N	\N	sequence	1	SO	Phage_RNA_Polymerase_Promoter	T7_RNA_Polymerase_Promoter
SO:0001203	SO:0001204	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001207	"A region (DNA) to which the T7 RNA polymerase binds, to begin transcription." [xenbase:jb]	1073373	\N	\N	sequence	2	SO	RNA_polymerase_promoter	T7_RNA_Polymerase_Promoter
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001207	"A region (DNA) to which the T7 RNA polymerase binds, to begin transcription." [xenbase:jb]	1904441	\N	SOFA	sequence	3	SO	promoter	T7_RNA_Polymerase_Promoter
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001207	"A region (DNA) to which the T7 RNA polymerase binds, to begin transcription." [xenbase:jb]	2928879	SOFA	SOFA	sequence	4	SO	transcriptional_cis_regulatory_region	T7_RNA_Polymerase_Promoter
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001207	"A region (DNA) to which the T7 RNA polymerase binds, to begin transcription." [xenbase:jb]	4002111	SOFA	SOFA	sequence	5	SO	transcription_regulatory_region	T7_RNA_Polymerase_Promoter
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001207	"A region (DNA) to which the T7 RNA polymerase binds, to begin transcription." [xenbase:jb]	4966512	SOFA	SOFA	sequence	6	SO	regulatory_region	T7_RNA_Polymerase_Promoter
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001207	"A region (DNA) to which the T7 RNA polymerase binds, to begin transcription." [xenbase:jb]	5741281	SOFA	SOFA	sequence	7	SO	gene_member_region	T7_RNA_Polymerase_Promoter
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001207	"A region (DNA) to which the T7 RNA polymerase binds, to begin transcription." [xenbase:jb]	6311102	SOFA	SOFA	sequence	8	SO	biological_region	T7_RNA_Polymerase_Promoter
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001207	"A region (DNA) to which the T7 RNA polymerase binds, to begin transcription." [xenbase:jb]	6699370	SOFA	SOFA	sequence	9	SO	region	T7_RNA_Polymerase_Promoter
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001207	"A region (DNA) to which the T7 RNA polymerase binds, to begin transcription." [xenbase:jb]	6948090	SOFA	SOFA	sequence	10	SO	sequence_feature	T7_RNA_Polymerase_Promoter
SO:0001208	\N	\N	"An EST read from the 5' end of a transcript that usually codes for a protein. These regions tend to be conserved across species and do not change much within a gene family." [http://www.ncbi.nlm.nih.gov/About/primer/est.html]	SO:0001208	"An EST read from the 5' end of a transcript that usually codes for a protein. These regions tend to be conserved across species and do not change much within a gene family." [http://www.ncbi.nlm.nih.gov/About/primer/est.html]	46085	\N	\N	sequence	0	SO	five_prime_EST	five_prime_EST
SO:0000345	SO:0001208	\N	"A tag produced from a single sequencing read from a cDNA clone or PCR product; typically a few hundred base pairs long." [SO:ke]	SO:0001208	"An EST read from the 5' end of a transcript that usually codes for a protein. These regions tend to be conserved across species and do not change much within a gene family." [http://www.ncbi.nlm.nih.gov/About/primer/est.html]	490816	\N	SOFA	sequence	1	SO	EST	five_prime_EST
SO:0000324	SO:0000345	\N	"A nucleotide sequence that may be used to identify a larger sequence." [SO:ke]	SO:0001208	"An EST read from the 5' end of a transcript that usually codes for a protein. These regions tend to be conserved across species and do not change much within a gene family." [http://www.ncbi.nlm.nih.gov/About/primer/est.html]	1073374	SOFA	SOFA	sequence	2	SO	tag	five_prime_EST
SO:0000696	SO:0000324	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0001208	"An EST read from the 5' end of a transcript that usually codes for a protein. These regions tend to be conserved across species and do not change much within a gene family." [http://www.ncbi.nlm.nih.gov/About/primer/est.html]	1904442	SOFA	SOFA	sequence	3	SO	oligo	five_prime_EST
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0001208	"An EST read from the 5' end of a transcript that usually codes for a protein. These regions tend to be conserved across species and do not change much within a gene family." [http://www.ncbi.nlm.nih.gov/About/primer/est.html]	2928880	SOFA	SOFA	sequence	4	SO	reagent	five_prime_EST
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001208	"An EST read from the 5' end of a transcript that usually codes for a protein. These regions tend to be conserved across species and do not change much within a gene family." [http://www.ncbi.nlm.nih.gov/About/primer/est.html]	4002112	SOFA	SOFA	sequence	5	SO	biomaterial_region	five_prime_EST
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001208	"An EST read from the 5' end of a transcript that usually codes for a protein. These regions tend to be conserved across species and do not change much within a gene family." [http://www.ncbi.nlm.nih.gov/About/primer/est.html]	4966513	SOFA	SOFA	sequence	6	SO	region	five_prime_EST
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001208	"An EST read from the 5' end of a transcript that usually codes for a protein. These regions tend to be conserved across species and do not change much within a gene family." [http://www.ncbi.nlm.nih.gov/About/primer/est.html]	5741282	SOFA	SOFA	sequence	7	SO	sequence_feature	five_prime_EST
SO:0001209	\N	\N	"An EST read from the 3' end of a transcript. They are more likely to fall within non-coding, or untranslated regions(UTRs)." [http://www.ncbi.nlm.nih.gov/About/primer/est.html]	SO:0001209	"An EST read from the 3' end of a transcript. They are more likely to fall within non-coding, or untranslated regions(UTRs)." [http://www.ncbi.nlm.nih.gov/About/primer/est.html]	46086	\N	\N	sequence	0	SO	three_prime_EST	three_prime_EST
SO:0000345	SO:0001209	\N	"A tag produced from a single sequencing read from a cDNA clone or PCR product; typically a few hundred base pairs long." [SO:ke]	SO:0001209	"An EST read from the 3' end of a transcript. They are more likely to fall within non-coding, or untranslated regions(UTRs)." [http://www.ncbi.nlm.nih.gov/About/primer/est.html]	490817	\N	SOFA	sequence	1	SO	EST	three_prime_EST
SO:0000324	SO:0000345	\N	"A nucleotide sequence that may be used to identify a larger sequence." [SO:ke]	SO:0001209	"An EST read from the 3' end of a transcript. They are more likely to fall within non-coding, or untranslated regions(UTRs)." [http://www.ncbi.nlm.nih.gov/About/primer/est.html]	1073375	SOFA	SOFA	sequence	2	SO	tag	three_prime_EST
SO:0000696	SO:0000324	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0001209	"An EST read from the 3' end of a transcript. They are more likely to fall within non-coding, or untranslated regions(UTRs)." [http://www.ncbi.nlm.nih.gov/About/primer/est.html]	1904443	SOFA	SOFA	sequence	3	SO	oligo	three_prime_EST
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0001209	"An EST read from the 3' end of a transcript. They are more likely to fall within non-coding, or untranslated regions(UTRs)." [http://www.ncbi.nlm.nih.gov/About/primer/est.html]	2928881	SOFA	SOFA	sequence	4	SO	reagent	three_prime_EST
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001209	"An EST read from the 3' end of a transcript. They are more likely to fall within non-coding, or untranslated regions(UTRs)." [http://www.ncbi.nlm.nih.gov/About/primer/est.html]	4002113	SOFA	SOFA	sequence	5	SO	biomaterial_region	three_prime_EST
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001209	"An EST read from the 3' end of a transcript. They are more likely to fall within non-coding, or untranslated regions(UTRs)." [http://www.ncbi.nlm.nih.gov/About/primer/est.html]	4966514	SOFA	SOFA	sequence	6	SO	region	three_prime_EST
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001209	"An EST read from the 3' end of a transcript. They are more likely to fall within non-coding, or untranslated regions(UTRs)." [http://www.ncbi.nlm.nih.gov/About/primer/est.html]	5741283	SOFA	SOFA	sequence	7	SO	sequence_feature	three_prime_EST
SO:0001210	\N	\N	"The region of mRNA (not divisible by 3 bases) that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	SO:0001210	"The region of mRNA (not divisible by 3 bases) that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	46087	\N	\N	sequence	0	SO	translational_frameshift	translational_frameshift
SO:0000836	SO:0001210	\N	"A region of an mRNA." [SO:cb]	SO:0001210	"The region of mRNA (not divisible by 3 bases) that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	490818	\N	SOFA	sequence	1	SO	mRNA_region	translational_frameshift
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0001210	"The region of mRNA (not divisible by 3 bases) that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	1073376	SOFA	SOFA	sequence	2	SO	mRNA	translational_frameshift
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:0001210	"The region of mRNA (not divisible by 3 bases) that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	1073377	SOFA	SOFA	sequence	2	SO	mature_transcript_region	translational_frameshift
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001210	"The region of mRNA (not divisible by 3 bases) that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	1904444	SOFA	SOFA	sequence	3	SO	mature_transcript	translational_frameshift
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0001210	"The region of mRNA (not divisible by 3 bases) that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	1904445	SOFA	SOFA	sequence	3	SO	transcript_region	translational_frameshift
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001210	"The region of mRNA (not divisible by 3 bases) that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	2928882	SOFA	SOFA	sequence	4	SO	transcript	translational_frameshift
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001210	"The region of mRNA (not divisible by 3 bases) that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	2928883	SOFA	SOFA	sequence	4	SO	transcript	translational_frameshift
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001210	"The region of mRNA (not divisible by 3 bases) that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	2928884	SOFA	SOFA	sequence	4	SO	biological_region	translational_frameshift
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001210	"The region of mRNA (not divisible by 3 bases) that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	4002114	SOFA	SOFA	sequence	5	SO	gene_member_region	translational_frameshift
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001210	"The region of mRNA (not divisible by 3 bases) that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	5741284	SOFA	SOFA	sequence	7	SO	region	translational_frameshift
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001210	"The region of mRNA (not divisible by 3 bases) that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	4966515	SOFA	SOFA	sequence	6	SO	biological_region	translational_frameshift
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001210	"The region of mRNA (not divisible by 3 bases) that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	5996428	SOFA	SOFA	sequence	8	SO	sequence_feature	translational_frameshift
SO:0001211	\N	\N	"The region of mRNA 1 base long that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	SO:0001211	"The region of mRNA 1 base long that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	46088	\N	\N	sequence	0	SO	plus_1_translational_frameshift	plus_1_translational_frameshift
SO:0001210	SO:0001211	\N	"The region of mRNA (not divisible by 3 bases) that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	SO:0001211	"The region of mRNA 1 base long that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	490819	\N	\N	sequence	1	SO	translational_frameshift	plus_1_translational_frameshift
SO:0000836	SO:0001210	\N	"A region of an mRNA." [SO:cb]	SO:0001211	"The region of mRNA 1 base long that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	1073378	\N	SOFA	sequence	2	SO	mRNA_region	plus_1_translational_frameshift
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0001211	"The region of mRNA 1 base long that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	1904446	SOFA	SOFA	sequence	3	SO	mRNA	plus_1_translational_frameshift
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:0001211	"The region of mRNA 1 base long that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	1904447	SOFA	SOFA	sequence	3	SO	mature_transcript_region	plus_1_translational_frameshift
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001211	"The region of mRNA 1 base long that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	2928885	SOFA	SOFA	sequence	4	SO	mature_transcript	plus_1_translational_frameshift
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0001211	"The region of mRNA 1 base long that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	2928886	SOFA	SOFA	sequence	4	SO	transcript_region	plus_1_translational_frameshift
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001211	"The region of mRNA 1 base long that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	4002116	SOFA	SOFA	sequence	5	SO	transcript	plus_1_translational_frameshift
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001211	"The region of mRNA 1 base long that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	4002117	SOFA	SOFA	sequence	5	SO	transcript	plus_1_translational_frameshift
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001211	"The region of mRNA 1 base long that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	4002118	SOFA	SOFA	sequence	5	SO	biological_region	plus_1_translational_frameshift
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001211	"The region of mRNA 1 base long that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	4966517	SOFA	SOFA	sequence	6	SO	gene_member_region	plus_1_translational_frameshift
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001211	"The region of mRNA 1 base long that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	6311103	SOFA	SOFA	sequence	8	SO	region	plus_1_translational_frameshift
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001211	"The region of mRNA 1 base long that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	5741285	SOFA	SOFA	sequence	7	SO	biological_region	plus_1_translational_frameshift
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001211	"The region of mRNA 1 base long that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	6550277	SOFA	SOFA	sequence	9	SO	sequence_feature	plus_1_translational_frameshift
SO:0001212	\N	\N	"The region of mRNA 2 bases long that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	SO:0001212	"The region of mRNA 2 bases long that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	46089	\N	\N	sequence	0	SO	plus_2_translational_frameshift	plus_2_translational_frameshift
SO:0001210	SO:0001212	\N	"The region of mRNA (not divisible by 3 bases) that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	SO:0001212	"The region of mRNA 2 bases long that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	490820	\N	\N	sequence	1	SO	translational_frameshift	plus_2_translational_frameshift
SO:0000836	SO:0001210	\N	"A region of an mRNA." [SO:cb]	SO:0001212	"The region of mRNA 2 bases long that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	1073379	\N	SOFA	sequence	2	SO	mRNA_region	plus_2_translational_frameshift
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0001212	"The region of mRNA 2 bases long that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	1904448	SOFA	SOFA	sequence	3	SO	mRNA	plus_2_translational_frameshift
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:0001212	"The region of mRNA 2 bases long that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	1904449	SOFA	SOFA	sequence	3	SO	mature_transcript_region	plus_2_translational_frameshift
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001212	"The region of mRNA 2 bases long that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	2928887	SOFA	SOFA	sequence	4	SO	mature_transcript	plus_2_translational_frameshift
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0001212	"The region of mRNA 2 bases long that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	2928888	SOFA	SOFA	sequence	4	SO	transcript_region	plus_2_translational_frameshift
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001212	"The region of mRNA 2 bases long that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	4002119	SOFA	SOFA	sequence	5	SO	transcript	plus_2_translational_frameshift
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001212	"The region of mRNA 2 bases long that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	4002120	SOFA	SOFA	sequence	5	SO	transcript	plus_2_translational_frameshift
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001212	"The region of mRNA 2 bases long that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	4002121	SOFA	SOFA	sequence	5	SO	biological_region	plus_2_translational_frameshift
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001212	"The region of mRNA 2 bases long that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	4966519	SOFA	SOFA	sequence	6	SO	gene_member_region	plus_2_translational_frameshift
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001212	"The region of mRNA 2 bases long that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	6311104	SOFA	SOFA	sequence	8	SO	region	plus_2_translational_frameshift
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001212	"The region of mRNA 2 bases long that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	5741287	SOFA	SOFA	sequence	7	SO	biological_region	plus_2_translational_frameshift
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001212	"The region of mRNA 2 bases long that is skipped during the process of translational frameshifting (GO:0006452), causing the reading frame to be different." [SO:ke]	6550278	SOFA	SOFA	sequence	9	SO	sequence_feature	plus_2_translational_frameshift
SO:0001213	\N	\N	"Group III introns are introns found in the mRNA of the plastids of euglenoid protists. They are spliced by a two step transesterification with bulged adenosine as initiating nucleophile." [PMID:11377794]	SO:0001213	"Group III introns are introns found in the mRNA of the plastids of euglenoid protists. They are spliced by a two step transesterification with bulged adenosine as initiating nucleophile." [PMID:11377794]	46090	\N	\N	sequence	0	SO	group_III_intron	group_III_intron
SO:0000588	SO:0001213	\N	"A self spliced intron." [SO:ke]	SO:0001213	"Group III introns are introns found in the mRNA of the plastids of euglenoid protists. They are spliced by a two step transesterification with bulged adenosine as initiating nucleophile." [PMID:11377794]	490821	\N	SOFA	sequence	1	SO	autocatalytically_spliced_intron	group_III_intron
SO:0000188	SO:0000588	\N	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001213	"Group III introns are introns found in the mRNA of the plastids of euglenoid protists. They are spliced by a two step transesterification with bulged adenosine as initiating nucleophile." [PMID:11377794]	1073380	SOFA	SOFA	sequence	2	SO	intron	group_III_intron
SO:0000835	SO:0000188	\N	"A part of a primary transcript." [SO:ke]	SO:0001213	"Group III introns are introns found in the mRNA of the plastids of euglenoid protists. They are spliced by a two step transesterification with bulged adenosine as initiating nucleophile." [PMID:11377794]	1904450	SOFA	SOFA	sequence	3	SO	primary_transcript_region	group_III_intron
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001213	"Group III introns are introns found in the mRNA of the plastids of euglenoid protists. They are spliced by a two step transesterification with bulged adenosine as initiating nucleophile." [PMID:11377794]	2928889	SOFA	SOFA	sequence	4	SO	primary_transcript	group_III_intron
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0001213	"Group III introns are introns found in the mRNA of the plastids of euglenoid protists. They are spliced by a two step transesterification with bulged adenosine as initiating nucleophile." [PMID:11377794]	2928890	SOFA	SOFA	sequence	4	SO	transcript_region	group_III_intron
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001213	"Group III introns are introns found in the mRNA of the plastids of euglenoid protists. They are spliced by a two step transesterification with bulged adenosine as initiating nucleophile." [PMID:11377794]	4002122	SOFA	SOFA	sequence	5	SO	transcript	group_III_intron
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001213	"Group III introns are introns found in the mRNA of the plastids of euglenoid protists. They are spliced by a two step transesterification with bulged adenosine as initiating nucleophile." [PMID:11377794]	4002123	SOFA	SOFA	sequence	5	SO	transcript	group_III_intron
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001213	"Group III introns are introns found in the mRNA of the plastids of euglenoid protists. They are spliced by a two step transesterification with bulged adenosine as initiating nucleophile." [PMID:11377794]	4002124	SOFA	SOFA	sequence	5	SO	biological_region	group_III_intron
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001213	"Group III introns are introns found in the mRNA of the plastids of euglenoid protists. They are spliced by a two step transesterification with bulged adenosine as initiating nucleophile." [PMID:11377794]	4966521	SOFA	SOFA	sequence	6	SO	gene_member_region	group_III_intron
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001213	"Group III introns are introns found in the mRNA of the plastids of euglenoid protists. They are spliced by a two step transesterification with bulged adenosine as initiating nucleophile." [PMID:11377794]	6311105	SOFA	SOFA	sequence	8	SO	region	group_III_intron
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001213	"Group III introns are introns found in the mRNA of the plastids of euglenoid protists. They are spliced by a two step transesterification with bulged adenosine as initiating nucleophile." [PMID:11377794]	5741289	SOFA	SOFA	sequence	7	SO	biological_region	group_III_intron
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001213	"Group III introns are introns found in the mRNA of the plastids of euglenoid protists. They are spliced by a two step transesterification with bulged adenosine as initiating nucleophile." [PMID:11377794]	6550279	SOFA	SOFA	sequence	9	SO	sequence_feature	group_III_intron
SO:0001214	\N	SOFA	"The maximal intersection of exon and UTR." [SO:ke]	SO:0001214	"The maximal intersection of exon and UTR." [SO:ke]	46091	\N	SOFA	sequence	0	SO	noncoding_region_of_exon	noncoding_region_of_exon
SO:0000852	SO:0001214	SOFA	"A region of an exon." [RSC:cb]	SO:0001214	"The maximal intersection of exon and UTR." [SO:ke]	490822	SOFA	SOFA	sequence	1	SO	exon_region	noncoding_region_of_exon
SO:0000147	SO:0000852	SOFA	"A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing." [SO:ke]	SO:0001214	"The maximal intersection of exon and UTR." [SO:ke]	1073381	SOFA	SOFA	sequence	2	SO	exon	noncoding_region_of_exon
SO:0000833	SO:0000852	SOFA	"A region of a transcript." [SO:ke]	SO:0001214	"The maximal intersection of exon and UTR." [SO:ke]	1073382	SOFA	SOFA	sequence	2	SO	transcript_region	noncoding_region_of_exon
SO:0000833	SO:0000147	SOFA	"A region of a transcript." [SO:ke]	SO:0001214	"The maximal intersection of exon and UTR." [SO:ke]	1904451	SOFA	SOFA	sequence	3	SO	transcript_region	noncoding_region_of_exon
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001214	"The maximal intersection of exon and UTR." [SO:ke]	2928891	SOFA	SOFA	sequence	4	SO	transcript	noncoding_region_of_exon
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001214	"The maximal intersection of exon and UTR." [SO:ke]	2928892	SOFA	SOFA	sequence	4	SO	biological_region	noncoding_region_of_exon
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0001214	"The maximal intersection of exon and UTR." [SO:ke]	3173958	SOFA	SOFA	sequence	5	SO	gene_member_region	noncoding_region_of_exon
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001214	"The maximal intersection of exon and UTR." [SO:ke]	5407469	SOFA	SOFA	sequence	7	SO	region	noncoding_region_of_exon
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001214	"The maximal intersection of exon and UTR." [SO:ke]	4385811	SOFA	SOFA	sequence	6	SO	biological_region	noncoding_region_of_exon
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001214	"The maximal intersection of exon and UTR." [SO:ke]	5876446	SOFA	SOFA	sequence	8	SO	sequence_feature	noncoding_region_of_exon
SO:0001215	\N	SOFA	"The region of an exon that encodes for protein sequence." [SO:ke]	SO:0001215	"The region of an exon that encodes for protein sequence." [SO:ke]	46092	\N	SOFA	sequence	0	SO	coding_region_of_exon	coding_region_of_exon
SO:0000852	SO:0001215	SOFA	"A region of an exon." [RSC:cb]	SO:0001215	"The region of an exon that encodes for protein sequence." [SO:ke]	490823	SOFA	SOFA	sequence	1	SO	exon_region	coding_region_of_exon
SO:0000147	SO:0000852	SOFA	"A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing." [SO:ke]	SO:0001215	"The region of an exon that encodes for protein sequence." [SO:ke]	1073383	SOFA	SOFA	sequence	2	SO	exon	coding_region_of_exon
SO:0000833	SO:0000852	SOFA	"A region of a transcript." [SO:ke]	SO:0001215	"The region of an exon that encodes for protein sequence." [SO:ke]	1073384	SOFA	SOFA	sequence	2	SO	transcript_region	coding_region_of_exon
SO:0000833	SO:0000147	SOFA	"A region of a transcript." [SO:ke]	SO:0001215	"The region of an exon that encodes for protein sequence." [SO:ke]	1904454	SOFA	SOFA	sequence	3	SO	transcript_region	coding_region_of_exon
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001215	"The region of an exon that encodes for protein sequence." [SO:ke]	2928895	SOFA	SOFA	sequence	4	SO	transcript	coding_region_of_exon
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001215	"The region of an exon that encodes for protein sequence." [SO:ke]	2928896	SOFA	SOFA	sequence	4	SO	biological_region	coding_region_of_exon
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0001215	"The region of an exon that encodes for protein sequence." [SO:ke]	3173960	SOFA	SOFA	sequence	5	SO	gene_member_region	coding_region_of_exon
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001215	"The region of an exon that encodes for protein sequence." [SO:ke]	5407470	SOFA	SOFA	sequence	7	SO	region	coding_region_of_exon
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001215	"The region of an exon that encodes for protein sequence." [SO:ke]	4385813	SOFA	SOFA	sequence	6	SO	biological_region	coding_region_of_exon
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001215	"The region of an exon that encodes for protein sequence." [SO:ke]	5876447	SOFA	SOFA	sequence	8	SO	sequence_feature	coding_region_of_exon
SO:0001216	\N	\N	"An intron that spliced via endonucleolytic cleavage and ligation rather than transesterification." [SO:ke]	SO:0001216	"An intron that spliced via endonucleolytic cleavage and ligation rather than transesterification." [SO:ke]	46093	\N	\N	sequence	0	SO	endonuclease_spliced_intron	endonuclease_spliced_intron
SO:0000188	SO:0001216	\N	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001216	"An intron that spliced via endonucleolytic cleavage and ligation rather than transesterification." [SO:ke]	490824	\N	SOFA	sequence	1	SO	intron	endonuclease_spliced_intron
SO:0000835	SO:0000188	\N	"A part of a primary transcript." [SO:ke]	SO:0001216	"An intron that spliced via endonucleolytic cleavage and ligation rather than transesterification." [SO:ke]	1073385	SOFA	SOFA	sequence	2	SO	primary_transcript_region	endonuclease_spliced_intron
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001216	"An intron that spliced via endonucleolytic cleavage and ligation rather than transesterification." [SO:ke]	1904457	SOFA	SOFA	sequence	3	SO	primary_transcript	endonuclease_spliced_intron
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0001216	"An intron that spliced via endonucleolytic cleavage and ligation rather than transesterification." [SO:ke]	1904458	SOFA	SOFA	sequence	3	SO	transcript_region	endonuclease_spliced_intron
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001216	"An intron that spliced via endonucleolytic cleavage and ligation rather than transesterification." [SO:ke]	2928899	SOFA	SOFA	sequence	4	SO	transcript	endonuclease_spliced_intron
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001216	"An intron that spliced via endonucleolytic cleavage and ligation rather than transesterification." [SO:ke]	2928900	SOFA	SOFA	sequence	4	SO	transcript	endonuclease_spliced_intron
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001216	"An intron that spliced via endonucleolytic cleavage and ligation rather than transesterification." [SO:ke]	2928901	SOFA	SOFA	sequence	4	SO	biological_region	endonuclease_spliced_intron
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001216	"An intron that spliced via endonucleolytic cleavage and ligation rather than transesterification." [SO:ke]	4002129	SOFA	SOFA	sequence	5	SO	gene_member_region	endonuclease_spliced_intron
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001216	"An intron that spliced via endonucleolytic cleavage and ligation rather than transesterification." [SO:ke]	5741291	SOFA	SOFA	sequence	7	SO	region	endonuclease_spliced_intron
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001216	"An intron that spliced via endonucleolytic cleavage and ligation rather than transesterification." [SO:ke]	4966525	SOFA	SOFA	sequence	6	SO	biological_region	endonuclease_spliced_intron
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001216	"An intron that spliced via endonucleolytic cleavage and ligation rather than transesterification." [SO:ke]	5996429	SOFA	SOFA	sequence	8	SO	sequence_feature	endonuclease_spliced_intron
SO:0001217	\N	\N	"" []	SO:0001217	"" []	46094	\N	\N	sequence	0	SO	protein_coding_gene	protein_coding_gene
SO:0000704	SO:0001217	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0001217	"" []	490825	\N	SOFA	sequence	1	SO	gene	protein_coding_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001217	"" []	1073386	SOFA	SOFA	sequence	2	SO	biological_region	protein_coding_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001217	"" []	1904459	SOFA	SOFA	sequence	3	SO	region	protein_coding_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001217	"" []	2928902	SOFA	SOFA	sequence	4	SO	sequence_feature	protein_coding_gene
SO:0001218	\N	\N	"An insertion that derives from another organism, via the use of recombinant DNA technology." [SO:bm]	SO:0001218	"An insertion that derives from another organism, via the use of recombinant DNA technology." [SO:bm]	46095	\N	\N	sequence	0	SO	transgenic_insertion	transgenic_insertion
SO:0000667	SO:0001218	\N	"The sequence of one or more nucleotides added between two adjacent nucleotides in the sequence." [SO:ke]	SO:0001218	"An insertion that derives from another organism, via the use of recombinant DNA technology." [SO:bm]	490826	\N	DBVAR,SOFA	sequence	1	SO	insertion	transgenic_insertion
SO:0001059	SO:0000667	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0001218	"An insertion that derives from another organism, via the use of recombinant DNA technology." [SO:bm]	1073387	DBVAR,SOFA	SOFA	sequence	2	SO	sequence_alteration	transgenic_insertion
SO:0001411	SO:0000667	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001218	"An insertion that derives from another organism, via the use of recombinant DNA technology." [SO:bm]	1073388	DBVAR,SOFA	SOFA	sequence	2	SO	biological_region	transgenic_insertion
SO:0002072	SO:0001059	\N	"" []	SO:0001218	"An insertion that derives from another organism, via the use of recombinant DNA technology." [SO:bm]	1904460	SOFA	\N	sequence	3	SO	sequence_comparison	transgenic_insertion
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001218	"An insertion that derives from another organism, via the use of recombinant DNA technology." [SO:bm]	1904461	SOFA	SOFA	sequence	3	SO	region	transgenic_insertion
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001218	"An insertion that derives from another organism, via the use of recombinant DNA technology." [SO:bm]	2928903	\N	SOFA	sequence	4	SO	sequence_feature	transgenic_insertion
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001218	"An insertion that derives from another organism, via the use of recombinant DNA technology." [SO:bm]	2928904	SOFA	SOFA	sequence	4	SO	sequence_feature	transgenic_insertion
SO:0001219	\N	\N	"" []	SO:0001219	"" []	46096	\N	\N	sequence	0	SO	retrogene	retrogene
SO:0000704	SO:0001219	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0001219	"" []	490827	\N	SOFA	sequence	1	SO	gene	retrogene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001219	"" []	1073389	SOFA	SOFA	sequence	2	SO	biological_region	retrogene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001219	"" []	1904462	SOFA	SOFA	sequence	3	SO	region	retrogene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001219	"" []	2928905	SOFA	SOFA	sequence	4	SO	sequence_feature	retrogene
SO:0001220	\N	\N	"An attribute describing an epigenetic process where a gene is inactivated by RNA interference." [RSC:cb]	SO:0001220	"An attribute describing an epigenetic process where a gene is inactivated by RNA interference." [RSC:cb]	46097	\N	\N	sequence	0	SO	silenced_by_RNA_interference	silenced_by_RNA_interference
SO:0000893	SO:0001220	\N	"An attribute describing an epigenetic process where a gene is inactivated at transcriptional or translational level." [SO:ke]	SO:0001220	"An attribute describing an epigenetic process where a gene is inactivated by RNA interference." [RSC:cb]	490828	\N	\N	sequence	1	SO	silenced	silenced_by_RNA_interference
SO:0000126	SO:0000893	\N	"A repressor molecule is required for transcription to stop." [SO:ke]	SO:0001220	"An attribute describing an epigenetic process where a gene is inactivated by RNA interference." [RSC:cb]	1073390	\N	\N	sequence	2	SO	transcriptionally_repressed	silenced_by_RNA_interference
SO:0000123	SO:0000126	\N	"An attribute describing a gene that is regulated at transcription." [SO:ma]	SO:0001220	"An attribute describing an epigenetic process where a gene is inactivated by RNA interference." [RSC:cb]	1904463	\N	\N	sequence	3	SO	transcriptionally_regulated	silenced_by_RNA_interference
SO:0000119	SO:0000123	\N	"An attribute to describe a sequence that is regulated." [SO:ke]	SO:0001220	"An attribute describing an epigenetic process where a gene is inactivated by RNA interference." [RSC:cb]	2928906	\N	\N	sequence	4	SO	regulated	silenced_by_RNA_interference
SO:0000401	SO:0000119	\N	"" []	SO:0001220	"An attribute describing an epigenetic process where a gene is inactivated by RNA interference." [RSC:cb]	4002131	\N	\N	sequence	5	SO	gene_attribute	silenced_by_RNA_interference
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001220	"An attribute describing an epigenetic process where a gene is inactivated by RNA interference." [RSC:cb]	4966527	\N	\N	sequence	6	SO	feature_attribute	silenced_by_RNA_interference
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001220	"An attribute describing an epigenetic process where a gene is inactivated by RNA interference." [RSC:cb]	5741292	\N	\N	sequence	7	SO	sequence_attribute	silenced_by_RNA_interference
SO:0001221	\N	\N	"An attribute describing an epigenetic process where a gene is inactivated by histone modification." [RSC:cb]	SO:0001221	"An attribute describing an epigenetic process where a gene is inactivated by histone modification." [RSC:cb]	46098	\N	\N	sequence	0	SO	silenced_by_histone_modification	silenced_by_histone_modification
SO:0000893	SO:0001221	\N	"An attribute describing an epigenetic process where a gene is inactivated at transcriptional or translational level." [SO:ke]	SO:0001221	"An attribute describing an epigenetic process where a gene is inactivated by histone modification." [RSC:cb]	490829	\N	\N	sequence	1	SO	silenced	silenced_by_histone_modification
SO:0000126	SO:0000893	\N	"A repressor molecule is required for transcription to stop." [SO:ke]	SO:0001221	"An attribute describing an epigenetic process where a gene is inactivated by histone modification." [RSC:cb]	1073391	\N	\N	sequence	2	SO	transcriptionally_repressed	silenced_by_histone_modification
SO:0000123	SO:0000126	\N	"An attribute describing a gene that is regulated at transcription." [SO:ma]	SO:0001221	"An attribute describing an epigenetic process where a gene is inactivated by histone modification." [RSC:cb]	1904464	\N	\N	sequence	3	SO	transcriptionally_regulated	silenced_by_histone_modification
SO:0000119	SO:0000123	\N	"An attribute to describe a sequence that is regulated." [SO:ke]	SO:0001221	"An attribute describing an epigenetic process where a gene is inactivated by histone modification." [RSC:cb]	2928907	\N	\N	sequence	4	SO	regulated	silenced_by_histone_modification
SO:0000401	SO:0000119	\N	"" []	SO:0001221	"An attribute describing an epigenetic process where a gene is inactivated by histone modification." [RSC:cb]	4002132	\N	\N	sequence	5	SO	gene_attribute	silenced_by_histone_modification
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001221	"An attribute describing an epigenetic process where a gene is inactivated by histone modification." [RSC:cb]	4966528	\N	\N	sequence	6	SO	feature_attribute	silenced_by_histone_modification
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001221	"An attribute describing an epigenetic process where a gene is inactivated by histone modification." [RSC:cb]	5741293	\N	\N	sequence	7	SO	sequence_attribute	silenced_by_histone_modification
SO:0001222	\N	\N	"An attribute describing an epigenetic process where a gene is inactivated by histone methylation." [RSC:cb]	SO:0001222	"An attribute describing an epigenetic process where a gene is inactivated by histone methylation." [RSC:cb]	46099	\N	\N	sequence	0	SO	silenced_by_histone_methylation	silenced_by_histone_methylation
SO:0001221	SO:0001222	\N	"An attribute describing an epigenetic process where a gene is inactivated by histone modification." [RSC:cb]	SO:0001222	"An attribute describing an epigenetic process where a gene is inactivated by histone methylation." [RSC:cb]	490830	\N	\N	sequence	1	SO	silenced_by_histone_modification	silenced_by_histone_methylation
SO:0000893	SO:0001221	\N	"An attribute describing an epigenetic process where a gene is inactivated at transcriptional or translational level." [SO:ke]	SO:0001222	"An attribute describing an epigenetic process where a gene is inactivated by histone methylation." [RSC:cb]	1073392	\N	\N	sequence	2	SO	silenced	silenced_by_histone_methylation
SO:0000126	SO:0000893	\N	"A repressor molecule is required for transcription to stop." [SO:ke]	SO:0001222	"An attribute describing an epigenetic process where a gene is inactivated by histone methylation." [RSC:cb]	1904465	\N	\N	sequence	3	SO	transcriptionally_repressed	silenced_by_histone_methylation
SO:0000123	SO:0000126	\N	"An attribute describing a gene that is regulated at transcription." [SO:ma]	SO:0001222	"An attribute describing an epigenetic process where a gene is inactivated by histone methylation." [RSC:cb]	2928908	\N	\N	sequence	4	SO	transcriptionally_regulated	silenced_by_histone_methylation
SO:0000119	SO:0000123	\N	"An attribute to describe a sequence that is regulated." [SO:ke]	SO:0001222	"An attribute describing an epigenetic process where a gene is inactivated by histone methylation." [RSC:cb]	4002133	\N	\N	sequence	5	SO	regulated	silenced_by_histone_methylation
SO:0000401	SO:0000119	\N	"" []	SO:0001222	"An attribute describing an epigenetic process where a gene is inactivated by histone methylation." [RSC:cb]	4966529	\N	\N	sequence	6	SO	gene_attribute	silenced_by_histone_methylation
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001222	"An attribute describing an epigenetic process where a gene is inactivated by histone methylation." [RSC:cb]	5741294	\N	\N	sequence	7	SO	feature_attribute	silenced_by_histone_methylation
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001222	"An attribute describing an epigenetic process where a gene is inactivated by histone methylation." [RSC:cb]	6311106	\N	\N	sequence	8	SO	sequence_attribute	silenced_by_histone_methylation
SO:0001223	\N	\N	"An attribute describing an epigenetic process where a gene is inactivated by histone deacetylation." [RSC:cb]	SO:0001223	"An attribute describing an epigenetic process where a gene is inactivated by histone deacetylation." [RSC:cb]	46100	\N	\N	sequence	0	SO	silenced_by_histone_deacetylation	silenced_by_histone_deacetylation
SO:0001221	SO:0001223	\N	"An attribute describing an epigenetic process where a gene is inactivated by histone modification." [RSC:cb]	SO:0001223	"An attribute describing an epigenetic process where a gene is inactivated by histone deacetylation." [RSC:cb]	490831	\N	\N	sequence	1	SO	silenced_by_histone_modification	silenced_by_histone_deacetylation
SO:0000893	SO:0001221	\N	"An attribute describing an epigenetic process where a gene is inactivated at transcriptional or translational level." [SO:ke]	SO:0001223	"An attribute describing an epigenetic process where a gene is inactivated by histone deacetylation." [RSC:cb]	1073393	\N	\N	sequence	2	SO	silenced	silenced_by_histone_deacetylation
SO:0000126	SO:0000893	\N	"A repressor molecule is required for transcription to stop." [SO:ke]	SO:0001223	"An attribute describing an epigenetic process where a gene is inactivated by histone deacetylation." [RSC:cb]	1904466	\N	\N	sequence	3	SO	transcriptionally_repressed	silenced_by_histone_deacetylation
SO:0000123	SO:0000126	\N	"An attribute describing a gene that is regulated at transcription." [SO:ma]	SO:0001223	"An attribute describing an epigenetic process where a gene is inactivated by histone deacetylation." [RSC:cb]	2928909	\N	\N	sequence	4	SO	transcriptionally_regulated	silenced_by_histone_deacetylation
SO:0000119	SO:0000123	\N	"An attribute to describe a sequence that is regulated." [SO:ke]	SO:0001223	"An attribute describing an epigenetic process where a gene is inactivated by histone deacetylation." [RSC:cb]	4002134	\N	\N	sequence	5	SO	regulated	silenced_by_histone_deacetylation
SO:0000401	SO:0000119	\N	"" []	SO:0001223	"An attribute describing an epigenetic process where a gene is inactivated by histone deacetylation." [RSC:cb]	4966530	\N	\N	sequence	6	SO	gene_attribute	silenced_by_histone_deacetylation
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001223	"An attribute describing an epigenetic process where a gene is inactivated by histone deacetylation." [RSC:cb]	5741295	\N	\N	sequence	7	SO	feature_attribute	silenced_by_histone_deacetylation
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001223	"An attribute describing an epigenetic process where a gene is inactivated by histone deacetylation." [RSC:cb]	6311107	\N	\N	sequence	8	SO	sequence_attribute	silenced_by_histone_deacetylation
SO:0001224	\N	\N	"A gene that is silenced by RNA interference." [SO:xp]	SO:0001224	"A gene that is silenced by RNA interference." [SO:xp]	46101	\N	\N	sequence	0	SO	gene_silenced_by_RNA_interference	gene_silenced_by_RNA_interference
SO:0000127	SO:0001224	\N	"A gene that is silenced." [SO:xp]	SO:0001224	"A gene that is silenced by RNA interference." [SO:xp]	490832	\N	\N	sequence	1	SO	silenced_gene	gene_silenced_by_RNA_interference
SO:0000704	SO:0000127	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0001224	"A gene that is silenced by RNA interference." [SO:xp]	1073394	\N	SOFA	sequence	2	SO	gene	gene_silenced_by_RNA_interference
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001224	"A gene that is silenced by RNA interference." [SO:xp]	1904467	SOFA	SOFA	sequence	3	SO	biological_region	gene_silenced_by_RNA_interference
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001224	"A gene that is silenced by RNA interference." [SO:xp]	2928910	SOFA	SOFA	sequence	4	SO	region	gene_silenced_by_RNA_interference
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001224	"A gene that is silenced by RNA interference." [SO:xp]	4002135	SOFA	SOFA	sequence	5	SO	sequence_feature	gene_silenced_by_RNA_interference
SO:0001225	\N	\N	"A gene that is silenced by histone modification." [SO:xp]	SO:0001225	"A gene that is silenced by histone modification." [SO:xp]	46102	\N	\N	sequence	0	SO	gene_silenced_by_histone_modification	gene_silenced_by_histone_modification
SO:0000127	SO:0001225	\N	"A gene that is silenced." [SO:xp]	SO:0001225	"A gene that is silenced by histone modification." [SO:xp]	490833	\N	\N	sequence	1	SO	silenced_gene	gene_silenced_by_histone_modification
SO:0000704	SO:0000127	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0001225	"A gene that is silenced by histone modification." [SO:xp]	1073395	\N	SOFA	sequence	2	SO	gene	gene_silenced_by_histone_modification
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001225	"A gene that is silenced by histone modification." [SO:xp]	1904468	SOFA	SOFA	sequence	3	SO	biological_region	gene_silenced_by_histone_modification
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001225	"A gene that is silenced by histone modification." [SO:xp]	2928911	SOFA	SOFA	sequence	4	SO	region	gene_silenced_by_histone_modification
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001225	"A gene that is silenced by histone modification." [SO:xp]	4002136	SOFA	SOFA	sequence	5	SO	sequence_feature	gene_silenced_by_histone_modification
SO:0001226	\N	\N	"A gene that is silenced by histone methylation." [SO:xp]	SO:0001226	"A gene that is silenced by histone methylation." [SO:xp]	46103	\N	\N	sequence	0	SO	gene_silenced_by_histone_methylation	gene_silenced_by_histone_methylation
SO:0001225	SO:0001226	\N	"A gene that is silenced by histone modification." [SO:xp]	SO:0001226	"A gene that is silenced by histone methylation." [SO:xp]	490834	\N	\N	sequence	1	SO	gene_silenced_by_histone_modification	gene_silenced_by_histone_methylation
SO:0000127	SO:0001225	\N	"A gene that is silenced." [SO:xp]	SO:0001226	"A gene that is silenced by histone methylation." [SO:xp]	1073396	\N	\N	sequence	2	SO	silenced_gene	gene_silenced_by_histone_methylation
SO:0000704	SO:0000127	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0001226	"A gene that is silenced by histone methylation." [SO:xp]	1904469	\N	SOFA	sequence	3	SO	gene	gene_silenced_by_histone_methylation
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001226	"A gene that is silenced by histone methylation." [SO:xp]	2928912	SOFA	SOFA	sequence	4	SO	biological_region	gene_silenced_by_histone_methylation
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001226	"A gene that is silenced by histone methylation." [SO:xp]	4002137	SOFA	SOFA	sequence	5	SO	region	gene_silenced_by_histone_methylation
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001226	"A gene that is silenced by histone methylation." [SO:xp]	4966531	SOFA	SOFA	sequence	6	SO	sequence_feature	gene_silenced_by_histone_methylation
SO:0001227	\N	\N	"A gene that is silenced by histone deacetylation." [SO:xp]	SO:0001227	"A gene that is silenced by histone deacetylation." [SO:xp]	46104	\N	\N	sequence	0	SO	gene_silenced_by_histone_deacetylation	gene_silenced_by_histone_deacetylation
SO:0001225	SO:0001227	\N	"A gene that is silenced by histone modification." [SO:xp]	SO:0001227	"A gene that is silenced by histone deacetylation." [SO:xp]	490835	\N	\N	sequence	1	SO	gene_silenced_by_histone_modification	gene_silenced_by_histone_deacetylation
SO:0000127	SO:0001225	\N	"A gene that is silenced." [SO:xp]	SO:0001227	"A gene that is silenced by histone deacetylation." [SO:xp]	1073397	\N	\N	sequence	2	SO	silenced_gene	gene_silenced_by_histone_deacetylation
SO:0000704	SO:0000127	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0001227	"A gene that is silenced by histone deacetylation." [SO:xp]	1904470	\N	SOFA	sequence	3	SO	gene	gene_silenced_by_histone_deacetylation
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001227	"A gene that is silenced by histone deacetylation." [SO:xp]	2928913	SOFA	SOFA	sequence	4	SO	biological_region	gene_silenced_by_histone_deacetylation
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001227	"A gene that is silenced by histone deacetylation." [SO:xp]	4002138	SOFA	SOFA	sequence	5	SO	region	gene_silenced_by_histone_deacetylation
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001227	"A gene that is silenced by histone deacetylation." [SO:xp]	4966532	SOFA	SOFA	sequence	6	SO	sequence_feature	gene_silenced_by_histone_deacetylation
SO:0001228	\N	\N	"A modified RNA base in which the 5,6-dihydrouracil is bound to the ribose ring." [RSC:cb]	SO:0001228	"A modified RNA base in which the 5,6-dihydrouracil is bound to the ribose ring." [RSC:cb]	46105	\N	\N	sequence	0	SO	dihydrouridine	dihydrouridine
SO:0001277	SO:0001228	\N	"" []	SO:0001228	"A modified RNA base in which the 5,6-dihydrouracil is bound to the ribose ring." [RSC:cb]	490836	\N	\N	sequence	1	SO	modified_uridine	dihydrouridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001228	"A modified RNA base in which the 5,6-dihydrouracil is bound to the ribose ring." [RSC:cb]	1073398	\N	\N	sequence	2	SO	modified_RNA_base_feature	dihydrouridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001228	"A modified RNA base in which the 5,6-dihydrouracil is bound to the ribose ring." [RSC:cb]	1904471	\N	SOFA	sequence	3	SO	base	dihydrouridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001228	"A modified RNA base in which the 5,6-dihydrouracil is bound to the ribose ring." [RSC:cb]	2928914	SOFA	SOFA	sequence	4	SO	biological_region	dihydrouridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001228	"A modified RNA base in which the 5,6-dihydrouracil is bound to the ribose ring." [RSC:cb]	4002139	SOFA	SOFA	sequence	5	SO	region	dihydrouridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001228	"A modified RNA base in which the 5,6-dihydrouracil is bound to the ribose ring." [RSC:cb]	4966533	SOFA	SOFA	sequence	6	SO	sequence_feature	dihydrouridine
SO:0001229	\N	\N	"A modified RNA base in which the 5- position of the uracil is bound to the ribose ring instead of the 4- position." [RSC:cb]	SO:0001229	"A modified RNA base in which the 5- position of the uracil is bound to the ribose ring instead of the 4- position." [RSC:cb]	46106	\N	\N	sequence	0	SO	pseudouridine	pseudouridine
SO:0001277	SO:0001229	\N	"" []	SO:0001229	"A modified RNA base in which the 5- position of the uracil is bound to the ribose ring instead of the 4- position." [RSC:cb]	490837	\N	\N	sequence	1	SO	modified_uridine	pseudouridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001229	"A modified RNA base in which the 5- position of the uracil is bound to the ribose ring instead of the 4- position." [RSC:cb]	1073399	\N	\N	sequence	2	SO	modified_RNA_base_feature	pseudouridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001229	"A modified RNA base in which the 5- position of the uracil is bound to the ribose ring instead of the 4- position." [RSC:cb]	1904472	\N	SOFA	sequence	3	SO	base	pseudouridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001229	"A modified RNA base in which the 5- position of the uracil is bound to the ribose ring instead of the 4- position." [RSC:cb]	2928915	SOFA	SOFA	sequence	4	SO	biological_region	pseudouridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001229	"A modified RNA base in which the 5- position of the uracil is bound to the ribose ring instead of the 4- position." [RSC:cb]	4002140	SOFA	SOFA	sequence	5	SO	region	pseudouridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001229	"A modified RNA base in which the 5- position of the uracil is bound to the ribose ring instead of the 4- position." [RSC:cb]	4966534	SOFA	SOFA	sequence	6	SO	sequence_feature	pseudouridine
SO:0001230	\N	\N	"A modified RNA base in which hypoxanthine is bound to the ribose ring." [http://library.med.utah.edu/RNAmods/, RSC:cb]	SO:0001230	"A modified RNA base in which hypoxanthine is bound to the ribose ring." [http://library.med.utah.edu/RNAmods/, RSC:cb]	46107	\N	\N	sequence	0	SO	inosine	inosine
SO:0000250	SO:0001230	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001230	"A modified RNA base in which hypoxanthine is bound to the ribose ring." [http://library.med.utah.edu/RNAmods/, RSC:cb]	490838	\N	\N	sequence	1	SO	modified_RNA_base_feature	inosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001230	"A modified RNA base in which hypoxanthine is bound to the ribose ring." [http://library.med.utah.edu/RNAmods/, RSC:cb]	1073400	\N	SOFA	sequence	2	SO	base	inosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001230	"A modified RNA base in which hypoxanthine is bound to the ribose ring." [http://library.med.utah.edu/RNAmods/, RSC:cb]	1904473	SOFA	SOFA	sequence	3	SO	biological_region	inosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001230	"A modified RNA base in which hypoxanthine is bound to the ribose ring." [http://library.med.utah.edu/RNAmods/, RSC:cb]	2928916	SOFA	SOFA	sequence	4	SO	region	inosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001230	"A modified RNA base in which hypoxanthine is bound to the ribose ring." [http://library.med.utah.edu/RNAmods/, RSC:cb]	4002141	SOFA	SOFA	sequence	5	SO	sequence_feature	inosine
SO:0001231	\N	\N	"A modified RNA base in which guanine is methylated at the 7- position." [RSC:cb]	SO:0001231	"A modified RNA base in which guanine is methylated at the 7- position." [RSC:cb]	46108	\N	\N	sequence	0	SO	seven_methylguanine	seven_methylguanine
SO:0000250	SO:0001231	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001231	"A modified RNA base in which guanine is methylated at the 7- position." [RSC:cb]	490839	\N	\N	sequence	1	SO	modified_RNA_base_feature	seven_methylguanine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001231	"A modified RNA base in which guanine is methylated at the 7- position." [RSC:cb]	1073401	\N	SOFA	sequence	2	SO	base	seven_methylguanine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001231	"A modified RNA base in which guanine is methylated at the 7- position." [RSC:cb]	1904474	SOFA	SOFA	sequence	3	SO	biological_region	seven_methylguanine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001231	"A modified RNA base in which guanine is methylated at the 7- position." [RSC:cb]	2928917	SOFA	SOFA	sequence	4	SO	region	seven_methylguanine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001231	"A modified RNA base in which guanine is methylated at the 7- position." [RSC:cb]	4002142	SOFA	SOFA	sequence	5	SO	sequence_feature	seven_methylguanine
SO:0001232	\N	\N	"A modified RNA base in which thymine is bound to the ribose ring." [RSC:cb]	SO:0001232	"A modified RNA base in which thymine is bound to the ribose ring." [RSC:cb]	46109	\N	\N	sequence	0	SO	ribothymidine	ribothymidine
SO:0000250	SO:0001232	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001232	"A modified RNA base in which thymine is bound to the ribose ring." [RSC:cb]	490840	\N	\N	sequence	1	SO	modified_RNA_base_feature	ribothymidine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001232	"A modified RNA base in which thymine is bound to the ribose ring." [RSC:cb]	1073402	\N	SOFA	sequence	2	SO	base	ribothymidine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001232	"A modified RNA base in which thymine is bound to the ribose ring." [RSC:cb]	1904475	SOFA	SOFA	sequence	3	SO	biological_region	ribothymidine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001232	"A modified RNA base in which thymine is bound to the ribose ring." [RSC:cb]	2928918	SOFA	SOFA	sequence	4	SO	region	ribothymidine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001232	"A modified RNA base in which thymine is bound to the ribose ring." [RSC:cb]	4002143	SOFA	SOFA	sequence	5	SO	sequence_feature	ribothymidine
SO:0001233	\N	\N	"A modified RNA base in which methylhypoxanthine is bound to the ribose ring." [RSC:cb]	SO:0001233	"A modified RNA base in which methylhypoxanthine is bound to the ribose ring." [RSC:cb]	46110	\N	\N	sequence	0	SO	methylinosine	methylinosine
SO:0001274	SO:0001233	\N	"A modified inosine is an inosine base feature that has been altered." [SO:ke]	SO:0001233	"A modified RNA base in which methylhypoxanthine is bound to the ribose ring." [RSC:cb]	490841	\N	\N	sequence	1	SO	modified_inosine	methylinosine
SO:0001230	SO:0001274	\N	"A modified RNA base in which hypoxanthine is bound to the ribose ring." [http://library.med.utah.edu/RNAmods/, RSC:cb]	SO:0001233	"A modified RNA base in which methylhypoxanthine is bound to the ribose ring." [RSC:cb]	1073403	\N	\N	sequence	2	SO	inosine	methylinosine
SO:0000250	SO:0001230	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001233	"A modified RNA base in which methylhypoxanthine is bound to the ribose ring." [RSC:cb]	1904476	\N	\N	sequence	3	SO	modified_RNA_base_feature	methylinosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001233	"A modified RNA base in which methylhypoxanthine is bound to the ribose ring." [RSC:cb]	2928919	\N	SOFA	sequence	4	SO	base	methylinosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001233	"A modified RNA base in which methylhypoxanthine is bound to the ribose ring." [RSC:cb]	4002144	SOFA	SOFA	sequence	5	SO	biological_region	methylinosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001233	"A modified RNA base in which methylhypoxanthine is bound to the ribose ring." [RSC:cb]	4966535	SOFA	SOFA	sequence	6	SO	region	methylinosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001233	"A modified RNA base in which methylhypoxanthine is bound to the ribose ring." [RSC:cb]	5741296	SOFA	SOFA	sequence	7	SO	sequence_feature	methylinosine
SO:0001234	\N	\N	"An attribute describing a feature that has either intra-genome or intracellular mobility." [RSC:cb]	SO:0001234	"An attribute describing a feature that has either intra-genome or intracellular mobility." [RSC:cb]	46111	\N	\N	sequence	0	SO	mobile	mobile
SO:0000733	SO:0001234	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001234	"An attribute describing a feature that has either intra-genome or intracellular mobility." [RSC:cb]	490842	\N	\N	sequence	1	SO	feature_attribute	mobile
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001234	"An attribute describing a feature that has either intra-genome or intracellular mobility." [RSC:cb]	1073404	\N	\N	sequence	2	SO	sequence_attribute	mobile
SO:0001235	\N	SOFA	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001235	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	46112	\N	SOFA	sequence	0	SO	replicon	replicon
SO:0001411	SO:0001235	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001235	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	490843	SOFA	SOFA	sequence	1	SO	biological_region	replicon
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001235	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	1073405	SOFA	SOFA	sequence	2	SO	region	replicon
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001235	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	1904477	SOFA	SOFA	sequence	3	SO	sequence_feature	replicon
SO:0001236	\N	SOFA	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001236	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	46113	\N	SOFA	sequence	0	SO	base	base
SO:0001411	SO:0001236	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001236	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	490844	SOFA	SOFA	sequence	1	SO	biological_region	base
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001236	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	1073406	SOFA	SOFA	sequence	2	SO	region	base
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001236	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	1904478	SOFA	SOFA	sequence	3	SO	sequence_feature	base
SO:0001237	\N	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001237	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	46114	\N	\N	sequence	0	SO	amino_acid	amino_acid
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001237	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	490845	\N	SOFA	sequence	1	SO	polypeptide	amino_acid
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001237	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	490846	\N	SOFA	sequence	1	SO	biological_region	amino_acid
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001237	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	1073407	SOFA	SOFA	sequence	2	SO	biological_region	amino_acid
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001237	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	1904479	SOFA	SOFA	sequence	3	SO	region	amino_acid
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001237	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	2018241	SOFA	SOFA	sequence	4	SO	sequence_feature	amino_acid
SO:0001238	\N	\N	"" []	SO:0001238	"" []	46115	\N	\N	sequence	0	SO	major_TSS	major_TSS
SO:0000315	SO:0001238	\N	"The first base where RNA polymerase begins to synthesize the RNA transcript." [SO:ke]	SO:0001238	"" []	490847	\N	SOFA	sequence	1	SO	TSS	major_TSS
SO:0000835	SO:0000315	\N	"A part of a primary transcript." [SO:ke]	SO:0001238	"" []	1073409	SOFA	SOFA	sequence	2	SO	primary_transcript_region	major_TSS
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001238	"" []	1904481	SOFA	SOFA	sequence	3	SO	primary_transcript	major_TSS
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0001238	"" []	1904482	SOFA	SOFA	sequence	3	SO	transcript_region	major_TSS
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001238	"" []	2928920	SOFA	SOFA	sequence	4	SO	transcript	major_TSS
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001238	"" []	2928921	SOFA	SOFA	sequence	4	SO	transcript	major_TSS
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001238	"" []	2928922	SOFA	SOFA	sequence	4	SO	biological_region	major_TSS
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001238	"" []	4002145	SOFA	SOFA	sequence	5	SO	gene_member_region	major_TSS
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001238	"" []	5741297	SOFA	SOFA	sequence	7	SO	region	major_TSS
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001238	"" []	4966536	SOFA	SOFA	sequence	6	SO	biological_region	major_TSS
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001238	"" []	5996430	SOFA	SOFA	sequence	8	SO	sequence_feature	major_TSS
SO:0001239	\N	\N	"" []	SO:0001239	"" []	46116	\N	\N	sequence	0	SO	minor_TSS	minor_TSS
SO:0000315	SO:0001239	\N	"The first base where RNA polymerase begins to synthesize the RNA transcript." [SO:ke]	SO:0001239	"" []	490848	\N	SOFA	sequence	1	SO	TSS	minor_TSS
SO:0000835	SO:0000315	\N	"A part of a primary transcript." [SO:ke]	SO:0001239	"" []	1073410	SOFA	SOFA	sequence	2	SO	primary_transcript_region	minor_TSS
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001239	"" []	1904483	SOFA	SOFA	sequence	3	SO	primary_transcript	minor_TSS
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0001239	"" []	1904484	SOFA	SOFA	sequence	3	SO	transcript_region	minor_TSS
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001239	"" []	2928923	SOFA	SOFA	sequence	4	SO	transcript	minor_TSS
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001239	"" []	2928924	SOFA	SOFA	sequence	4	SO	transcript	minor_TSS
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001239	"" []	2928925	SOFA	SOFA	sequence	4	SO	biological_region	minor_TSS
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001239	"" []	4002147	SOFA	SOFA	sequence	5	SO	gene_member_region	minor_TSS
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001239	"" []	5741298	SOFA	SOFA	sequence	7	SO	region	minor_TSS
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001239	"" []	4966538	SOFA	SOFA	sequence	6	SO	biological_region	minor_TSS
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001239	"" []	5996431	SOFA	SOFA	sequence	8	SO	sequence_feature	minor_TSS
SO:0001240	\N	\N	"The region of a gene from the 5' most TSS to the 3' TSS." [BBOP:nw]	SO:0001240	"The region of a gene from the 5' most TSS to the 3' TSS." [BBOP:nw]	46117	\N	\N	sequence	0	SO	TSS_region	TSS_region
SO:0000842	SO:0001240	\N	"" []	SO:0001240	"The region of a gene from the 5' most TSS to the 3' TSS." [BBOP:nw]	490849	\N	SOFA	sequence	1	SO	gene_component_region	TSS_region
SO:0000704	SO:0000842	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0001240	"The region of a gene from the 5' most TSS to the 3' TSS." [BBOP:nw]	1073411	SOFA	SOFA	sequence	2	SO	gene	TSS_region
SO:0001411	SO:0000842	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001240	"The region of a gene from the 5' most TSS to the 3' TSS." [BBOP:nw]	1073412	SOFA	SOFA	sequence	2	SO	biological_region	TSS_region
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001240	"The region of a gene from the 5' most TSS to the 3' TSS." [BBOP:nw]	1904485	SOFA	SOFA	sequence	3	SO	biological_region	TSS_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001240	"The region of a gene from the 5' most TSS to the 3' TSS." [BBOP:nw]	2928926	SOFA	SOFA	sequence	4	SO	region	TSS_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001240	"The region of a gene from the 5' most TSS to the 3' TSS." [BBOP:nw]	3173962	SOFA	SOFA	sequence	5	SO	sequence_feature	TSS_region
SO:0001241	\N	\N	"" []	SO:0001241	"" []	46118	\N	\N	sequence	0	SO	encodes_alternate_transcription_start_sites	encodes_alternate_transcription_start_sites
SO:0000401	SO:0001241	\N	"" []	SO:0001241	"" []	490850	\N	\N	sequence	1	SO	gene_attribute	encodes_alternate_transcription_start_sites
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001241	"" []	1073413	\N	\N	sequence	2	SO	feature_attribute	encodes_alternate_transcription_start_sites
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001241	"" []	1904487	\N	\N	sequence	3	SO	sequence_attribute	encodes_alternate_transcription_start_sites
SO:0001243	\N	\N	"A part of an miRNA primary_transcript." [SO:ke]	SO:0001243	"A part of an miRNA primary_transcript." [SO:ke]	46119	\N	\N	sequence	0	SO	miRNA_primary_transcript_region	miRNA_primary_transcript_region
SO:0000835	SO:0001243	\N	"A part of a primary transcript." [SO:ke]	SO:0001243	"A part of an miRNA primary_transcript." [SO:ke]	490851	\N	SOFA	sequence	1	SO	primary_transcript_region	miRNA_primary_transcript_region
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001243	"A part of an miRNA primary_transcript." [SO:ke]	1073414	SOFA	SOFA	sequence	2	SO	primary_transcript	miRNA_primary_transcript_region
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0001243	"A part of an miRNA primary_transcript." [SO:ke]	1073415	SOFA	SOFA	sequence	2	SO	transcript_region	miRNA_primary_transcript_region
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001243	"A part of an miRNA primary_transcript." [SO:ke]	1904488	SOFA	SOFA	sequence	3	SO	transcript	miRNA_primary_transcript_region
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001243	"A part of an miRNA primary_transcript." [SO:ke]	1904489	SOFA	SOFA	sequence	3	SO	transcript	miRNA_primary_transcript_region
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001243	"A part of an miRNA primary_transcript." [SO:ke]	1904490	SOFA	SOFA	sequence	3	SO	biological_region	miRNA_primary_transcript_region
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001243	"A part of an miRNA primary_transcript." [SO:ke]	2928928	SOFA	SOFA	sequence	4	SO	gene_member_region	miRNA_primary_transcript_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001243	"A part of an miRNA primary_transcript." [SO:ke]	4966540	SOFA	SOFA	sequence	6	SO	region	miRNA_primary_transcript_region
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001243	"A part of an miRNA primary_transcript." [SO:ke]	4002149	SOFA	SOFA	sequence	5	SO	biological_region	miRNA_primary_transcript_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001243	"A part of an miRNA primary_transcript." [SO:ke]	5180726	SOFA	SOFA	sequence	7	SO	sequence_feature	miRNA_primary_transcript_region
SO:0001244	\N	\N	"The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin structure." [SO:ke]	SO:0001244	"The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin structure." [SO:ke]	46120	\N	\N	sequence	0	SO	pre_miRNA	pre_miRNA
SO:0001243	SO:0001244	\N	"A part of an miRNA primary_transcript." [SO:ke]	SO:0001244	"The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin structure." [SO:ke]	490852	\N	\N	sequence	1	SO	miRNA_primary_transcript_region	pre_miRNA
SO:0000835	SO:0001243	\N	"A part of a primary transcript." [SO:ke]	SO:0001244	"The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin structure." [SO:ke]	1073416	\N	SOFA	sequence	2	SO	primary_transcript_region	pre_miRNA
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001244	"The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin structure." [SO:ke]	1904491	SOFA	SOFA	sequence	3	SO	primary_transcript	pre_miRNA
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0001244	"The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin structure." [SO:ke]	1904492	SOFA	SOFA	sequence	3	SO	transcript_region	pre_miRNA
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001244	"The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin structure." [SO:ke]	2928930	SOFA	SOFA	sequence	4	SO	transcript	pre_miRNA
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001244	"The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin structure." [SO:ke]	2928931	SOFA	SOFA	sequence	4	SO	transcript	pre_miRNA
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001244	"The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin structure." [SO:ke]	2928932	SOFA	SOFA	sequence	4	SO	biological_region	pre_miRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001244	"The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin structure." [SO:ke]	4002151	SOFA	SOFA	sequence	5	SO	gene_member_region	pre_miRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001244	"The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin structure." [SO:ke]	5741299	SOFA	SOFA	sequence	7	SO	region	pre_miRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001244	"The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin structure." [SO:ke]	4966541	SOFA	SOFA	sequence	6	SO	biological_region	pre_miRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001244	"The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin structure." [SO:ke]	5996432	SOFA	SOFA	sequence	8	SO	sequence_feature	pre_miRNA
SO:0001245	\N	\N	"The stem of the hairpin loop formed by folding of the pre-miRNA." [SO:ke]	SO:0001245	"The stem of the hairpin loop formed by folding of the pre-miRNA." [SO:ke]	46121	\N	\N	sequence	0	SO	miRNA_stem	miRNA_stem
SO:0001243	SO:0001245	\N	"A part of an miRNA primary_transcript." [SO:ke]	SO:0001245	"The stem of the hairpin loop formed by folding of the pre-miRNA." [SO:ke]	490853	\N	\N	sequence	1	SO	miRNA_primary_transcript_region	miRNA_stem
SO:0001244	SO:0001245	\N	"The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin structure." [SO:ke]	SO:0001245	"The stem of the hairpin loop formed by folding of the pre-miRNA." [SO:ke]	490854	\N	\N	sequence	1	SO	pre_miRNA	miRNA_stem
SO:0000835	SO:0001243	\N	"A part of a primary transcript." [SO:ke]	SO:0001245	"The stem of the hairpin loop formed by folding of the pre-miRNA." [SO:ke]	1904495	\N	SOFA	sequence	3	SO	primary_transcript_region	miRNA_stem
SO:0001243	SO:0001244	\N	"A part of an miRNA primary_transcript." [SO:ke]	SO:0001245	"The stem of the hairpin loop formed by folding of the pre-miRNA." [SO:ke]	1073418	\N	\N	sequence	2	SO	miRNA_primary_transcript_region	miRNA_stem
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001245	"The stem of the hairpin loop formed by folding of the pre-miRNA." [SO:ke]	2018242	SOFA	SOFA	sequence	4	SO	primary_transcript	miRNA_stem
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0001245	"The stem of the hairpin loop formed by folding of the pre-miRNA." [SO:ke]	2018243	SOFA	SOFA	sequence	4	SO	transcript_region	miRNA_stem
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001245	"The stem of the hairpin loop formed by folding of the pre-miRNA." [SO:ke]	3173963	SOFA	SOFA	sequence	5	SO	transcript	miRNA_stem
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001245	"The stem of the hairpin loop formed by folding of the pre-miRNA." [SO:ke]	3173964	SOFA	SOFA	sequence	5	SO	transcript	miRNA_stem
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001245	"The stem of the hairpin loop formed by folding of the pre-miRNA." [SO:ke]	3173965	SOFA	SOFA	sequence	5	SO	biological_region	miRNA_stem
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001245	"The stem of the hairpin loop formed by folding of the pre-miRNA." [SO:ke]	4385815	SOFA	SOFA	sequence	6	SO	gene_member_region	miRNA_stem
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001245	"The stem of the hairpin loop formed by folding of the pre-miRNA." [SO:ke]	6146674	SOFA	SOFA	sequence	8	SO	region	miRNA_stem
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001245	"The stem of the hairpin loop formed by folding of the pre-miRNA." [SO:ke]	5407471	SOFA	SOFA	sequence	7	SO	biological_region	miRNA_stem
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001245	"The stem of the hairpin loop formed by folding of the pre-miRNA." [SO:ke]	6469756	SOFA	SOFA	sequence	9	SO	sequence_feature	miRNA_stem
SO:0001246	\N	\N	"The loop of the hairpin loop formed by folding of the pre-miRNA." [SO:ke]	SO:0001246	"The loop of the hairpin loop formed by folding of the pre-miRNA." [SO:ke]	46122	\N	\N	sequence	0	SO	miRNA_loop	miRNA_loop
SO:0001243	SO:0001246	\N	"A part of an miRNA primary_transcript." [SO:ke]	SO:0001246	"The loop of the hairpin loop formed by folding of the pre-miRNA." [SO:ke]	490855	\N	\N	sequence	1	SO	miRNA_primary_transcript_region	miRNA_loop
SO:0001244	SO:0001246	\N	"The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin structure." [SO:ke]	SO:0001246	"The loop of the hairpin loop formed by folding of the pre-miRNA." [SO:ke]	490856	\N	\N	sequence	1	SO	pre_miRNA	miRNA_loop
SO:0000835	SO:0001243	\N	"A part of a primary transcript." [SO:ke]	SO:0001246	"The loop of the hairpin loop formed by folding of the pre-miRNA." [SO:ke]	1904498	\N	SOFA	sequence	3	SO	primary_transcript_region	miRNA_loop
SO:0001243	SO:0001244	\N	"A part of an miRNA primary_transcript." [SO:ke]	SO:0001246	"The loop of the hairpin loop formed by folding of the pre-miRNA." [SO:ke]	1073420	\N	\N	sequence	2	SO	miRNA_primary_transcript_region	miRNA_loop
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001246	"The loop of the hairpin loop formed by folding of the pre-miRNA." [SO:ke]	2018244	SOFA	SOFA	sequence	4	SO	primary_transcript	miRNA_loop
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0001246	"The loop of the hairpin loop formed by folding of the pre-miRNA." [SO:ke]	2018245	SOFA	SOFA	sequence	4	SO	transcript_region	miRNA_loop
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001246	"The loop of the hairpin loop formed by folding of the pre-miRNA." [SO:ke]	3173966	SOFA	SOFA	sequence	5	SO	transcript	miRNA_loop
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001246	"The loop of the hairpin loop formed by folding of the pre-miRNA." [SO:ke]	3173967	SOFA	SOFA	sequence	5	SO	transcript	miRNA_loop
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001246	"The loop of the hairpin loop formed by folding of the pre-miRNA." [SO:ke]	3173968	SOFA	SOFA	sequence	5	SO	biological_region	miRNA_loop
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001246	"The loop of the hairpin loop formed by folding of the pre-miRNA." [SO:ke]	4385817	SOFA	SOFA	sequence	6	SO	gene_member_region	miRNA_loop
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001246	"The loop of the hairpin loop formed by folding of the pre-miRNA." [SO:ke]	6146675	SOFA	SOFA	sequence	8	SO	region	miRNA_loop
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001246	"The loop of the hairpin loop formed by folding of the pre-miRNA." [SO:ke]	5407473	SOFA	SOFA	sequence	7	SO	biological_region	miRNA_loop
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001246	"The loop of the hairpin loop formed by folding of the pre-miRNA." [SO:ke]	6469757	SOFA	SOFA	sequence	9	SO	sequence_feature	miRNA_loop
SO:0001247	\N	\N	"An oligo composed of synthetic nucleotides." [SO:ke]	SO:0001247	"An oligo composed of synthetic nucleotides." [SO:ke]	46123	\N	\N	sequence	0	SO	synthetic_oligo	synthetic_oligo
SO:0000696	SO:0001247	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0001247	"An oligo composed of synthetic nucleotides." [SO:ke]	490857	\N	SOFA	sequence	1	SO	oligo	synthetic_oligo
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0001247	"An oligo composed of synthetic nucleotides." [SO:ke]	1073421	SOFA	SOFA	sequence	2	SO	reagent	synthetic_oligo
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001247	"An oligo composed of synthetic nucleotides." [SO:ke]	1904499	SOFA	SOFA	sequence	3	SO	biomaterial_region	synthetic_oligo
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001247	"An oligo composed of synthetic nucleotides." [SO:ke]	2928939	SOFA	SOFA	sequence	4	SO	region	synthetic_oligo
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001247	"An oligo composed of synthetic nucleotides." [SO:ke]	4002157	SOFA	SOFA	sequence	5	SO	sequence_feature	synthetic_oligo
SO:0001248	\N	SOFA	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0001248	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	46124	\N	SOFA	sequence	0	SO	assembly	assembly
SO:0001410	SO:0001248	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001248	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	490858	SOFA	SOFA	sequence	1	SO	experimental_feature	assembly
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001248	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	1073422	SOFA	SOFA	sequence	2	SO	region	assembly
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001248	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	1904500	SOFA	SOFA	sequence	3	SO	sequence_feature	assembly
SO:0001249	\N	\N	"A fragment assembly is a genome assembly that orders overlapping fragments of the genome based on landmark sequences. The base pair distance between the landmarks is known allowing additivity of lengths." [SO:ke]	SO:0001249	"A fragment assembly is a genome assembly that orders overlapping fragments of the genome based on landmark sequences. The base pair distance between the landmarks is known allowing additivity of lengths." [SO:ke]	46125	\N	\N	sequence	0	SO	fragment_assembly	fragment_assembly
SO:0001248	SO:0001249	\N	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0001249	"A fragment assembly is a genome assembly that orders overlapping fragments of the genome based on landmark sequences. The base pair distance between the landmarks is known allowing additivity of lengths." [SO:ke]	490859	\N	SOFA	sequence	1	SO	assembly	fragment_assembly
SO:0001410	SO:0001248	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001249	"A fragment assembly is a genome assembly that orders overlapping fragments of the genome based on landmark sequences. The base pair distance between the landmarks is known allowing additivity of lengths." [SO:ke]	1073423	SOFA	SOFA	sequence	2	SO	experimental_feature	fragment_assembly
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001249	"A fragment assembly is a genome assembly that orders overlapping fragments of the genome based on landmark sequences. The base pair distance between the landmarks is known allowing additivity of lengths." [SO:ke]	1904501	SOFA	SOFA	sequence	3	SO	region	fragment_assembly
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001249	"A fragment assembly is a genome assembly that orders overlapping fragments of the genome based on landmark sequences. The base pair distance between the landmarks is known allowing additivity of lengths." [SO:ke]	2928940	SOFA	SOFA	sequence	4	SO	sequence_feature	fragment_assembly
SO:0001250	\N	\N	"A fingerprint_map is a physical map composed of restriction fragments." [SO:ke]	SO:0001250	"A fingerprint_map is a physical map composed of restriction fragments." [SO:ke]	46126	\N	\N	sequence	0	SO	fingerprint_map	fingerprint_map
SO:0001249	SO:0001250	\N	"A fragment assembly is a genome assembly that orders overlapping fragments of the genome based on landmark sequences. The base pair distance between the landmarks is known allowing additivity of lengths." [SO:ke]	SO:0001250	"A fingerprint_map is a physical map composed of restriction fragments." [SO:ke]	490860	\N	\N	sequence	1	SO	fragment_assembly	fingerprint_map
SO:0001248	SO:0001249	\N	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0001250	"A fingerprint_map is a physical map composed of restriction fragments." [SO:ke]	1073424	\N	SOFA	sequence	2	SO	assembly	fingerprint_map
SO:0001410	SO:0001248	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001250	"A fingerprint_map is a physical map composed of restriction fragments." [SO:ke]	1904502	SOFA	SOFA	sequence	3	SO	experimental_feature	fingerprint_map
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001250	"A fingerprint_map is a physical map composed of restriction fragments." [SO:ke]	2928941	SOFA	SOFA	sequence	4	SO	region	fingerprint_map
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001250	"A fingerprint_map is a physical map composed of restriction fragments." [SO:ke]	4002158	SOFA	SOFA	sequence	5	SO	sequence_feature	fingerprint_map
SO:0001251	\N	\N	"An STS map is a physical map organized by the unique STS landmarks." [SO:ke]	SO:0001251	"An STS map is a physical map organized by the unique STS landmarks." [SO:ke]	46127	\N	\N	sequence	0	SO	STS_map	STS_map
SO:0001249	SO:0001251	\N	"A fragment assembly is a genome assembly that orders overlapping fragments of the genome based on landmark sequences. The base pair distance between the landmarks is known allowing additivity of lengths." [SO:ke]	SO:0001251	"An STS map is a physical map organized by the unique STS landmarks." [SO:ke]	490861	\N	\N	sequence	1	SO	fragment_assembly	STS_map
SO:0001248	SO:0001249	\N	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0001251	"An STS map is a physical map organized by the unique STS landmarks." [SO:ke]	1073425	\N	SOFA	sequence	2	SO	assembly	STS_map
SO:0001410	SO:0001248	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001251	"An STS map is a physical map organized by the unique STS landmarks." [SO:ke]	1904503	SOFA	SOFA	sequence	3	SO	experimental_feature	STS_map
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001251	"An STS map is a physical map organized by the unique STS landmarks." [SO:ke]	2928942	SOFA	SOFA	sequence	4	SO	region	STS_map
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001251	"An STS map is a physical map organized by the unique STS landmarks." [SO:ke]	4002159	SOFA	SOFA	sequence	5	SO	sequence_feature	STS_map
SO:0001252	\N	\N	"A radiation hybrid map is a physical map." [SO:ke]	SO:0001252	"A radiation hybrid map is a physical map." [SO:ke]	46128	\N	\N	sequence	0	SO	RH_map	RH_map
SO:0001249	SO:0001252	\N	"A fragment assembly is a genome assembly that orders overlapping fragments of the genome based on landmark sequences. The base pair distance between the landmarks is known allowing additivity of lengths." [SO:ke]	SO:0001252	"A radiation hybrid map is a physical map." [SO:ke]	490862	\N	\N	sequence	1	SO	fragment_assembly	RH_map
SO:0001248	SO:0001249	\N	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0001252	"A radiation hybrid map is a physical map." [SO:ke]	1073426	\N	SOFA	sequence	2	SO	assembly	RH_map
SO:0001410	SO:0001248	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001252	"A radiation hybrid map is a physical map." [SO:ke]	1904504	SOFA	SOFA	sequence	3	SO	experimental_feature	RH_map
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001252	"A radiation hybrid map is a physical map." [SO:ke]	2928943	SOFA	SOFA	sequence	4	SO	region	RH_map
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001252	"A radiation hybrid map is a physical map." [SO:ke]	4002160	SOFA	SOFA	sequence	5	SO	sequence_feature	RH_map
SO:0001253	\N	\N	"A DNA fragment generated by sonication. Sonication is a technique used to sheer DNA into smaller fragments." [SO:ke]	SO:0001253	"A DNA fragment generated by sonication. Sonication is a technique used to sheer DNA into smaller fragments." [SO:ke]	46129	\N	\N	sequence	0	SO	sonicate_fragment	sonicate_fragment
SO:0000143	SO:0001253	\N	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0001253	"A DNA fragment generated by sonication. Sonication is a technique used to sheer DNA into smaller fragments." [SO:ke]	490863	\N	SOFA	sequence	1	SO	assembly_component	sonicate_fragment
SO:0001410	SO:0000143	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001253	"A DNA fragment generated by sonication. Sonication is a technique used to sheer DNA into smaller fragments." [SO:ke]	1073427	SOFA	SOFA	sequence	2	SO	experimental_feature	sonicate_fragment
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001253	"A DNA fragment generated by sonication. Sonication is a technique used to sheer DNA into smaller fragments." [SO:ke]	1904505	SOFA	SOFA	sequence	3	SO	region	sonicate_fragment
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001253	"A DNA fragment generated by sonication. Sonication is a technique used to sheer DNA into smaller fragments." [SO:ke]	2928944	SOFA	SOFA	sequence	4	SO	sequence_feature	sonicate_fragment
SO:0001254	\N	\N	"A kind of chromosome variation where the chromosome complement is an exact multiple of the haploid number and is greater than the diploid number." [SO:ke]	SO:0001254	"A kind of chromosome variation where the chromosome complement is an exact multiple of the haploid number and is greater than the diploid number." [SO:ke]	46130	\N	\N	sequence	0	SO	polyploid	polyploid
SO:1000182	SO:0001254	\N	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number." [SO:ke]	SO:0001254	"A kind of chromosome variation where the chromosome complement is an exact multiple of the haploid number and is greater than the diploid number." [SO:ke]	490864	\N	\N	sequence	1	SO	chromosome_number_variation	polyploid
SO:0000240	SO:1000182	\N	"" []	SO:0001254	"A kind of chromosome variation where the chromosome complement is an exact multiple of the haploid number and is greater than the diploid number." [SO:ke]	1073428	\N	\N	sequence	2	SO	chromosome_variation	polyploid
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0001254	"A kind of chromosome variation where the chromosome complement is an exact multiple of the haploid number and is greater than the diploid number." [SO:ke]	1904506	\N	\N	sequence	3	SO	variant_collection	polyploid
SO:0001524	SO:0000240	\N	"" []	SO:0001254	"A kind of chromosome variation where the chromosome complement is an exact multiple of the haploid number and is greater than the diploid number." [SO:ke]	1904507	\N	\N	sequence	3	SO	chromosomally_aberrant_genome	polyploid
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0001254	"A kind of chromosome variation where the chromosome complement is an exact multiple of the haploid number and is greater than the diploid number." [SO:ke]	2928945	\N	\N	sequence	4	SO	sequence_collection	polyploid
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0001254	"A kind of chromosome variation where the chromosome complement is an exact multiple of the haploid number and is greater than the diploid number." [SO:ke]	2928946	\N	\N	sequence	4	SO	variant_genome	polyploid
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0001254	"A kind of chromosome variation where the chromosome complement is an exact multiple of the haploid number and is greater than the diploid number." [SO:ke]	4002161	\N	\N	sequence	5	SO	genome	polyploid
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0001254	"A kind of chromosome variation where the chromosome complement is an exact multiple of the haploid number and is greater than the diploid number." [SO:ke]	4966547	\N	\N	sequence	6	SO	sequence_collection	polyploid
SO:0001255	\N	\N	"A polyploid where the multiple chromosome set was derived from the same organism." [SO:ke]	SO:0001255	"A polyploid where the multiple chromosome set was derived from the same organism." [SO:ke]	46131	\N	\N	sequence	0	SO	autopolyploid	autopolyploid
SO:0001254	SO:0001255	\N	"A kind of chromosome variation where the chromosome complement is an exact multiple of the haploid number and is greater than the diploid number." [SO:ke]	SO:0001255	"A polyploid where the multiple chromosome set was derived from the same organism." [SO:ke]	490865	\N	\N	sequence	1	SO	polyploid	autopolyploid
SO:1000182	SO:0001254	\N	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number." [SO:ke]	SO:0001255	"A polyploid where the multiple chromosome set was derived from the same organism." [SO:ke]	1073429	\N	\N	sequence	2	SO	chromosome_number_variation	autopolyploid
SO:0000240	SO:1000182	\N	"" []	SO:0001255	"A polyploid where the multiple chromosome set was derived from the same organism." [SO:ke]	1904508	\N	\N	sequence	3	SO	chromosome_variation	autopolyploid
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0001255	"A polyploid where the multiple chromosome set was derived from the same organism." [SO:ke]	2928947	\N	\N	sequence	4	SO	variant_collection	autopolyploid
SO:0001524	SO:0000240	\N	"" []	SO:0001255	"A polyploid where the multiple chromosome set was derived from the same organism." [SO:ke]	2928948	\N	\N	sequence	4	SO	chromosomally_aberrant_genome	autopolyploid
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0001255	"A polyploid where the multiple chromosome set was derived from the same organism." [SO:ke]	4002162	\N	\N	sequence	5	SO	sequence_collection	autopolyploid
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0001255	"A polyploid where the multiple chromosome set was derived from the same organism." [SO:ke]	4002163	\N	\N	sequence	5	SO	variant_genome	autopolyploid
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0001255	"A polyploid where the multiple chromosome set was derived from the same organism." [SO:ke]	4966548	\N	\N	sequence	6	SO	genome	autopolyploid
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0001255	"A polyploid where the multiple chromosome set was derived from the same organism." [SO:ke]	5741302	\N	\N	sequence	7	SO	sequence_collection	autopolyploid
SO:0001256	\N	\N	"A polyploid where the multiple chromosome set was derived from a different organism." [SO:ke]	SO:0001256	"A polyploid where the multiple chromosome set was derived from a different organism." [SO:ke]	46132	\N	\N	sequence	0	SO	allopolyploid	allopolyploid
SO:0001254	SO:0001256	\N	"A kind of chromosome variation where the chromosome complement is an exact multiple of the haploid number and is greater than the diploid number." [SO:ke]	SO:0001256	"A polyploid where the multiple chromosome set was derived from a different organism." [SO:ke]	490866	\N	\N	sequence	1	SO	polyploid	allopolyploid
SO:1000182	SO:0001254	\N	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number." [SO:ke]	SO:0001256	"A polyploid where the multiple chromosome set was derived from a different organism." [SO:ke]	1073430	\N	\N	sequence	2	SO	chromosome_number_variation	allopolyploid
SO:0000240	SO:1000182	\N	"" []	SO:0001256	"A polyploid where the multiple chromosome set was derived from a different organism." [SO:ke]	1904509	\N	\N	sequence	3	SO	chromosome_variation	allopolyploid
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0001256	"A polyploid where the multiple chromosome set was derived from a different organism." [SO:ke]	2928949	\N	\N	sequence	4	SO	variant_collection	allopolyploid
SO:0001524	SO:0000240	\N	"" []	SO:0001256	"A polyploid where the multiple chromosome set was derived from a different organism." [SO:ke]	2928950	\N	\N	sequence	4	SO	chromosomally_aberrant_genome	allopolyploid
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0001256	"A polyploid where the multiple chromosome set was derived from a different organism." [SO:ke]	4002164	\N	\N	sequence	5	SO	sequence_collection	allopolyploid
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0001256	"A polyploid where the multiple chromosome set was derived from a different organism." [SO:ke]	4002165	\N	\N	sequence	5	SO	variant_genome	allopolyploid
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0001256	"A polyploid where the multiple chromosome set was derived from a different organism." [SO:ke]	4966549	\N	\N	sequence	6	SO	genome	allopolyploid
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0001256	"A polyploid where the multiple chromosome set was derived from a different organism." [SO:ke]	5741303	\N	\N	sequence	7	SO	sequence_collection	allopolyploid
SO:0001257	\N	\N	"The binding site (recognition site) of a homing endonuclease. The binding site is typically large." [SO:ke]	SO:0001257	"The binding site (recognition site) of a homing endonuclease. The binding site is typically large." [SO:ke]	46133	\N	\N	sequence	0	SO	homing_endonuclease_binding_site	homing_endonuclease_binding_site
SO:0000059	SO:0001257	\N	"A binding site that, of a nucleotide molecule, that interacts selectively and non-covalently with polypeptide residues of a nuclease." [SO:cb]	SO:0001257	"The binding site (recognition site) of a homing endonuclease. The binding site is typically large." [SO:ke]	490867	\N	SOFA	sequence	1	SO	nuclease_binding_site	homing_endonuclease_binding_site
SO:0001654	SO:0000059	\N	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	SO:0001257	"The binding site (recognition site) of a homing endonuclease. The binding site is typically large." [SO:ke]	1073431	SOFA	SOFA	sequence	2	SO	nucleotide_to_protein_binding_site	homing_endonuclease_binding_site
SO:0000410	SO:0001654	\N	"A binding site that, in the molecule, interacts selectively and non-covalently with polypeptide molecules." [SO:ke]	SO:0001257	"The binding site (recognition site) of a homing endonuclease. The binding site is typically large." [SO:ke]	1904510	SOFA	SOFA	sequence	3	SO	protein_binding_site	homing_endonuclease_binding_site
SO:0000409	SO:0000410	\N	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0001257	"The binding site (recognition site) of a homing endonuclease. The binding site is typically large." [SO:ke]	2928951	SOFA	biosapiens,SOFA	sequence	4	SO	binding_site	homing_endonuclease_binding_site
SO:0001411	SO:0000409	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001257	"The binding site (recognition site) of a homing endonuclease. The binding site is typically large." [SO:ke]	4002166	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	homing_endonuclease_binding_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001257	"The binding site (recognition site) of a homing endonuclease. The binding site is typically large." [SO:ke]	4966550	SOFA	SOFA	sequence	6	SO	region	homing_endonuclease_binding_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001257	"The binding site (recognition site) of a homing endonuclease. The binding site is typically large." [SO:ke]	5741304	SOFA	SOFA	sequence	7	SO	sequence_feature	homing_endonuclease_binding_site
SO:0001258	\N	\N	"A sequence element characteristic of some RNA polymerase II promoters with sequence ATTGCAT that binds Pou-domain transcription factors." [GOC:dh, PMID:3095662]	SO:0001258	"A sequence element characteristic of some RNA polymerase II promoters with sequence ATTGCAT that binds Pou-domain transcription factors." [GOC:dh, PMID:3095662]	46134	\N	\N	sequence	0	SO	octamer_motif	octamer_motif
SO:0000170	SO:0001258	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	SO:0001258	"A sequence element characteristic of some RNA polymerase II promoters with sequence ATTGCAT that binds Pou-domain transcription factors." [GOC:dh, PMID:3095662]	490868	\N	\N	sequence	1	SO	RNApol_II_promoter	octamer_motif
SO:0000713	SO:0001258	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001258	"A sequence element characteristic of some RNA polymerase II promoters with sequence ATTGCAT that binds Pou-domain transcription factors." [GOC:dh, PMID:3095662]	490869	\N	\N	sequence	1	SO	DNA_motif	octamer_motif
SO:0001203	SO:0000170	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001258	"A sequence element characteristic of some RNA polymerase II promoters with sequence ATTGCAT that binds Pou-domain transcription factors." [GOC:dh, PMID:3095662]	1073432	\N	\N	sequence	2	SO	RNA_polymerase_promoter	octamer_motif
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001258	"A sequence element characteristic of some RNA polymerase II promoters with sequence ATTGCAT that binds Pou-domain transcription factors." [GOC:dh, PMID:3095662]	1073433	\N	SOFA	sequence	2	SO	nucleotide_motif	octamer_motif
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001258	"A sequence element characteristic of some RNA polymerase II promoters with sequence ATTGCAT that binds Pou-domain transcription factors." [GOC:dh, PMID:3095662]	1904511	\N	SOFA	sequence	3	SO	promoter	octamer_motif
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001258	"A sequence element characteristic of some RNA polymerase II promoters with sequence ATTGCAT that binds Pou-domain transcription factors." [GOC:dh, PMID:3095662]	1904512	SOFA	SOFA	sequence	3	SO	sequence_motif	octamer_motif
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001258	"A sequence element characteristic of some RNA polymerase II promoters with sequence ATTGCAT that binds Pou-domain transcription factors." [GOC:dh, PMID:3095662]	2928952	SOFA	SOFA	sequence	4	SO	transcriptional_cis_regulatory_region	octamer_motif
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001258	"A sequence element characteristic of some RNA polymerase II promoters with sequence ATTGCAT that binds Pou-domain transcription factors." [GOC:dh, PMID:3095662]	2928953	SOFA	SOFA	sequence	4	SO	biological_region	octamer_motif
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001258	"A sequence element characteristic of some RNA polymerase II promoters with sequence ATTGCAT that binds Pou-domain transcription factors." [GOC:dh, PMID:3095662]	4002167	SOFA	SOFA	sequence	5	SO	transcription_regulatory_region	octamer_motif
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001258	"A sequence element characteristic of some RNA polymerase II promoters with sequence ATTGCAT that binds Pou-domain transcription factors." [GOC:dh, PMID:3095662]	6699371	SOFA	SOFA	sequence	9	SO	region	octamer_motif
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001258	"A sequence element characteristic of some RNA polymerase II promoters with sequence ATTGCAT that binds Pou-domain transcription factors." [GOC:dh, PMID:3095662]	4966551	SOFA	SOFA	sequence	6	SO	regulatory_region	octamer_motif
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001258	"A sequence element characteristic of some RNA polymerase II promoters with sequence ATTGCAT that binds Pou-domain transcription factors." [GOC:dh, PMID:3095662]	6807597	SOFA	SOFA	sequence	10	SO	sequence_feature	octamer_motif
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001258	"A sequence element characteristic of some RNA polymerase II promoters with sequence ATTGCAT that binds Pou-domain transcription factors." [GOC:dh, PMID:3095662]	5741305	SOFA	SOFA	sequence	7	SO	gene_member_region	octamer_motif
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001258	"A sequence element characteristic of some RNA polymerase II promoters with sequence ATTGCAT that binds Pou-domain transcription factors." [GOC:dh, PMID:3095662]	6311108	SOFA	SOFA	sequence	8	SO	biological_region	octamer_motif
SO:0001259	\N	\N	"A chromosome originating in an apicoplast." [SO:xp]	SO:0001259	"A chromosome originating in an apicoplast." [SO:xp]	46135	\N	\N	sequence	0	SO	apicoplast_chromosome	apicoplast_chromosome
SO:0000340	SO:0001259	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0001259	"A chromosome originating in an apicoplast." [SO:xp]	490870	\N	SOFA	sequence	1	SO	chromosome	apicoplast_chromosome
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001259	"A chromosome originating in an apicoplast." [SO:xp]	1073434	SOFA	SOFA	sequence	2	SO	replicon	apicoplast_chromosome
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001259	"A chromosome originating in an apicoplast." [SO:xp]	1904513	SOFA	SOFA	sequence	3	SO	biological_region	apicoplast_chromosome
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001259	"A chromosome originating in an apicoplast." [SO:xp]	2928954	SOFA	SOFA	sequence	4	SO	region	apicoplast_chromosome
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001259	"A chromosome originating in an apicoplast." [SO:xp]	4002169	SOFA	SOFA	sequence	5	SO	sequence_feature	apicoplast_chromosome
SO:0001260	\N	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0001260	"A collection of discontinuous sequences." [SO:ke]	46136	\N	\N	sequence	0	SO	sequence_collection	sequence_collection
SO:0001261	\N	\N	"A continuous region of sequence composed of the overlapping of multiple sequence_features, which ultimately provides evidence for another sequence_feature." [SO:ke]	SO:0001261	"A continuous region of sequence composed of the overlapping of multiple sequence_features, which ultimately provides evidence for another sequence_feature." [SO:ke]	46137	\N	\N	sequence	0	SO	overlapping_feature_set	overlapping_feature_set
SO:0000703	SO:0001261	\N	"A region of sequence implicated in an experimental result." [SO:ke]	SO:0001261	"A continuous region of sequence composed of the overlapping of multiple sequence_features, which ultimately provides evidence for another sequence_feature." [SO:ke]	490871	\N	SOFA	sequence	1	SO	experimental_result_region	overlapping_feature_set
SO:0000700	SO:0000703	\N	"A comment about the sequence." [SO:ke]	SO:0001261	"A continuous region of sequence composed of the overlapping of multiple sequence_features, which ultimately provides evidence for another sequence_feature." [SO:ke]	1073435	SOFA	SOFA	sequence	2	SO	remark	overlapping_feature_set
SO:0001410	SO:0000700	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001261	"A continuous region of sequence composed of the overlapping of multiple sequence_features, which ultimately provides evidence for another sequence_feature." [SO:ke]	1904514	SOFA	SOFA	sequence	3	SO	experimental_feature	overlapping_feature_set
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001261	"A continuous region of sequence composed of the overlapping of multiple sequence_features, which ultimately provides evidence for another sequence_feature." [SO:ke]	2928955	SOFA	SOFA	sequence	4	SO	region	overlapping_feature_set
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001261	"A continuous region of sequence composed of the overlapping of multiple sequence_features, which ultimately provides evidence for another sequence_feature." [SO:ke]	4002170	SOFA	SOFA	sequence	5	SO	sequence_feature	overlapping_feature_set
SO:0001262	\N	\N	"A continous experimental result region extending the length of multiple overlapping EST's." [SO:ke]	SO:0001262	"A continous experimental result region extending the length of multiple overlapping EST's." [SO:ke]	46138	\N	\N	sequence	0	SO	overlapping_EST_set	overlapping_EST_set
SO:0001261	SO:0001262	\N	"A continuous region of sequence composed of the overlapping of multiple sequence_features, which ultimately provides evidence for another sequence_feature." [SO:ke]	SO:0001262	"A continous experimental result region extending the length of multiple overlapping EST's." [SO:ke]	490872	\N	\N	sequence	1	SO	overlapping_feature_set	overlapping_EST_set
SO:0000703	SO:0001261	\N	"A region of sequence implicated in an experimental result." [SO:ke]	SO:0001262	"A continous experimental result region extending the length of multiple overlapping EST's." [SO:ke]	1073436	\N	SOFA	sequence	2	SO	experimental_result_region	overlapping_EST_set
SO:0000700	SO:0000703	\N	"A comment about the sequence." [SO:ke]	SO:0001262	"A continous experimental result region extending the length of multiple overlapping EST's." [SO:ke]	1904515	SOFA	SOFA	sequence	3	SO	remark	overlapping_EST_set
SO:0001410	SO:0000700	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001262	"A continous experimental result region extending the length of multiple overlapping EST's." [SO:ke]	2928956	SOFA	SOFA	sequence	4	SO	experimental_feature	overlapping_EST_set
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001262	"A continous experimental result region extending the length of multiple overlapping EST's." [SO:ke]	4002171	SOFA	SOFA	sequence	5	SO	region	overlapping_EST_set
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001262	"A continous experimental result region extending the length of multiple overlapping EST's." [SO:ke]	4966553	SOFA	SOFA	sequence	6	SO	sequence_feature	overlapping_EST_set
SO:0001263	\N	\N	"A gene that encodes a non-coding RNA." []	SO:0001263	"A gene that encodes a non-coding RNA." []	46139	\N	\N	sequence	0	SO	ncRNA_gene	ncRNA_gene
SO:0000704	SO:0001263	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0001263	"A gene that encodes a non-coding RNA." []	490873	\N	SOFA	sequence	1	SO	gene	ncRNA_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001263	"A gene that encodes a non-coding RNA." []	1073437	SOFA	SOFA	sequence	2	SO	biological_region	ncRNA_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001263	"A gene that encodes a non-coding RNA." []	1904516	SOFA	SOFA	sequence	3	SO	region	ncRNA_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001263	"A gene that encodes a non-coding RNA." []	2928957	SOFA	SOFA	sequence	4	SO	sequence_feature	ncRNA_gene
SO:0001264	\N	\N	"" []	SO:0001264	"" []	46140	\N	\N	sequence	0	SO	gRNA_gene	gRNA_gene
SO:0001263	SO:0001264	\N	"A gene that encodes a non-coding RNA." []	SO:0001264	"" []	490874	\N	\N	sequence	1	SO	ncRNA_gene	gRNA_gene
SO:0000704	SO:0001263	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0001264	"" []	1073438	\N	SOFA	sequence	2	SO	gene	gRNA_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001264	"" []	1904517	SOFA	SOFA	sequence	3	SO	biological_region	gRNA_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001264	"" []	2928958	SOFA	SOFA	sequence	4	SO	region	gRNA_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001264	"" []	4002172	SOFA	SOFA	sequence	5	SO	sequence_feature	gRNA_gene
SO:0001265	\N	\N	"" []	SO:0001265	"" []	46141	\N	\N	sequence	0	SO	miRNA_gene	miRNA_gene
SO:0001263	SO:0001265	\N	"A gene that encodes a non-coding RNA." []	SO:0001265	"" []	490875	\N	\N	sequence	1	SO	ncRNA_gene	miRNA_gene
SO:0000704	SO:0001263	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0001265	"" []	1073439	\N	SOFA	sequence	2	SO	gene	miRNA_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001265	"" []	1904518	SOFA	SOFA	sequence	3	SO	biological_region	miRNA_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001265	"" []	2928959	SOFA	SOFA	sequence	4	SO	region	miRNA_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001265	"" []	4002173	SOFA	SOFA	sequence	5	SO	sequence_feature	miRNA_gene
SO:0001266	\N	\N	"" []	SO:0001266	"" []	46142	\N	\N	sequence	0	SO	scRNA_gene	scRNA_gene
SO:0001263	SO:0001266	\N	"A gene that encodes a non-coding RNA." []	SO:0001266	"" []	490876	\N	\N	sequence	1	SO	ncRNA_gene	scRNA_gene
SO:0000704	SO:0001263	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0001266	"" []	1073440	\N	SOFA	sequence	2	SO	gene	scRNA_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001266	"" []	1904519	SOFA	SOFA	sequence	3	SO	biological_region	scRNA_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001266	"" []	2928960	SOFA	SOFA	sequence	4	SO	region	scRNA_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001266	"" []	4002174	SOFA	SOFA	sequence	5	SO	sequence_feature	scRNA_gene
SO:0001267	\N	\N	"" []	SO:0001267	"" []	46143	\N	\N	sequence	0	SO	snoRNA_gene	snoRNA_gene
SO:0001263	SO:0001267	\N	"A gene that encodes a non-coding RNA." []	SO:0001267	"" []	490877	\N	\N	sequence	1	SO	ncRNA_gene	snoRNA_gene
SO:0000704	SO:0001263	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0001267	"" []	1073441	\N	SOFA	sequence	2	SO	gene	snoRNA_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001267	"" []	1904520	SOFA	SOFA	sequence	3	SO	biological_region	snoRNA_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001267	"" []	2928961	SOFA	SOFA	sequence	4	SO	region	snoRNA_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001267	"" []	4002175	SOFA	SOFA	sequence	5	SO	sequence_feature	snoRNA_gene
SO:0001268	\N	\N	"A gene that encodes a small nuclear RNA." [http://en.wikipedia.org/wiki/Small_nuclear_RNA]	SO:0001268	"A gene that encodes a small nuclear RNA." [http://en.wikipedia.org/wiki/Small_nuclear_RNA]	46144	\N	\N	sequence	0	SO	snRNA_gene	snRNA_gene
SO:0001263	SO:0001268	\N	"A gene that encodes a non-coding RNA." []	SO:0001268	"A gene that encodes a small nuclear RNA." [http://en.wikipedia.org/wiki/Small_nuclear_RNA]	490878	\N	\N	sequence	1	SO	ncRNA_gene	snRNA_gene
SO:0000704	SO:0001263	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0001268	"A gene that encodes a small nuclear RNA." [http://en.wikipedia.org/wiki/Small_nuclear_RNA]	1073442	\N	SOFA	sequence	2	SO	gene	snRNA_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001268	"A gene that encodes a small nuclear RNA." [http://en.wikipedia.org/wiki/Small_nuclear_RNA]	1904521	SOFA	SOFA	sequence	3	SO	biological_region	snRNA_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001268	"A gene that encodes a small nuclear RNA." [http://en.wikipedia.org/wiki/Small_nuclear_RNA]	2928962	SOFA	SOFA	sequence	4	SO	region	snRNA_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001268	"A gene that encodes a small nuclear RNA." [http://en.wikipedia.org/wiki/Small_nuclear_RNA]	4002176	SOFA	SOFA	sequence	5	SO	sequence_feature	snRNA_gene
SO:0001269	\N	\N	"" []	SO:0001269	"" []	46145	\N	\N	sequence	0	SO	SRP_RNA_gene	SRP_RNA_gene
SO:0001263	SO:0001269	\N	"A gene that encodes a non-coding RNA." []	SO:0001269	"" []	490879	\N	\N	sequence	1	SO	ncRNA_gene	SRP_RNA_gene
SO:0000704	SO:0001263	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0001269	"" []	1073443	\N	SOFA	sequence	2	SO	gene	SRP_RNA_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001269	"" []	1904522	SOFA	SOFA	sequence	3	SO	biological_region	SRP_RNA_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001269	"" []	2928963	SOFA	SOFA	sequence	4	SO	region	SRP_RNA_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001269	"" []	4002177	SOFA	SOFA	sequence	5	SO	sequence_feature	SRP_RNA_gene
SO:0001271	\N	\N	"" []	SO:0001271	"" []	46146	\N	\N	sequence	0	SO	tmRNA_gene	tmRNA_gene
SO:0001263	SO:0001271	\N	"A gene that encodes a non-coding RNA." []	SO:0001271	"" []	490880	\N	\N	sequence	1	SO	ncRNA_gene	tmRNA_gene
SO:0000704	SO:0001263	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0001271	"" []	1073444	\N	SOFA	sequence	2	SO	gene	tmRNA_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001271	"" []	1904523	SOFA	SOFA	sequence	3	SO	biological_region	tmRNA_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001271	"" []	2928964	SOFA	SOFA	sequence	4	SO	region	tmRNA_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001271	"" []	4002178	SOFA	SOFA	sequence	5	SO	sequence_feature	tmRNA_gene
SO:0001272	\N	\N	"" []	SO:0001272	"" []	46147	\N	\N	sequence	0	SO	tRNA_gene	tRNA_gene
SO:0001263	SO:0001272	\N	"A gene that encodes a non-coding RNA." []	SO:0001272	"" []	490881	\N	\N	sequence	1	SO	ncRNA_gene	tRNA_gene
SO:0000704	SO:0001263	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0001272	"" []	1073445	\N	SOFA	sequence	2	SO	gene	tRNA_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001272	"" []	1904524	SOFA	SOFA	sequence	3	SO	biological_region	tRNA_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001272	"" []	2928965	SOFA	SOFA	sequence	4	SO	region	tRNA_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001272	"" []	4002179	SOFA	SOFA	sequence	5	SO	sequence_feature	tRNA_gene
SO:0001273	\N	\N	"A modified adenine is an adenine base feature that has been altered." [SO:ke]	SO:0001273	"A modified adenine is an adenine base feature that has been altered." [SO:ke]	46148	\N	\N	sequence	0	SO	modified_adenosine	modified_adenosine
SO:0000250	SO:0001273	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001273	"A modified adenine is an adenine base feature that has been altered." [SO:ke]	490882	\N	\N	sequence	1	SO	modified_RNA_base_feature	modified_adenosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001273	"A modified adenine is an adenine base feature that has been altered." [SO:ke]	1073446	\N	SOFA	sequence	2	SO	base	modified_adenosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001273	"A modified adenine is an adenine base feature that has been altered." [SO:ke]	1904525	SOFA	SOFA	sequence	3	SO	biological_region	modified_adenosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001273	"A modified adenine is an adenine base feature that has been altered." [SO:ke]	2928966	SOFA	SOFA	sequence	4	SO	region	modified_adenosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001273	"A modified adenine is an adenine base feature that has been altered." [SO:ke]	4002180	SOFA	SOFA	sequence	5	SO	sequence_feature	modified_adenosine
SO:0001274	\N	\N	"A modified inosine is an inosine base feature that has been altered." [SO:ke]	SO:0001274	"A modified inosine is an inosine base feature that has been altered." [SO:ke]	46149	\N	\N	sequence	0	SO	modified_inosine	modified_inosine
SO:0001230	SO:0001274	\N	"A modified RNA base in which hypoxanthine is bound to the ribose ring." [http://library.med.utah.edu/RNAmods/, RSC:cb]	SO:0001274	"A modified inosine is an inosine base feature that has been altered." [SO:ke]	490883	\N	\N	sequence	1	SO	inosine	modified_inosine
SO:0000250	SO:0001230	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001274	"A modified inosine is an inosine base feature that has been altered." [SO:ke]	1073447	\N	\N	sequence	2	SO	modified_RNA_base_feature	modified_inosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001274	"A modified inosine is an inosine base feature that has been altered." [SO:ke]	1904526	\N	SOFA	sequence	3	SO	base	modified_inosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001274	"A modified inosine is an inosine base feature that has been altered." [SO:ke]	2928967	SOFA	SOFA	sequence	4	SO	biological_region	modified_inosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001274	"A modified inosine is an inosine base feature that has been altered." [SO:ke]	4002181	SOFA	SOFA	sequence	5	SO	region	modified_inosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001274	"A modified inosine is an inosine base feature that has been altered." [SO:ke]	4966554	SOFA	SOFA	sequence	6	SO	sequence_feature	modified_inosine
SO:0001275	\N	\N	"A modified cytidine is a cytidine base feature which has been altered." [SO:ke]	SO:0001275	"A modified cytidine is a cytidine base feature which has been altered." [SO:ke]	46150	\N	\N	sequence	0	SO	modified_cytidine	modified_cytidine
SO:0000250	SO:0001275	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001275	"A modified cytidine is a cytidine base feature which has been altered." [SO:ke]	490884	\N	\N	sequence	1	SO	modified_RNA_base_feature	modified_cytidine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001275	"A modified cytidine is a cytidine base feature which has been altered." [SO:ke]	1073448	\N	SOFA	sequence	2	SO	base	modified_cytidine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001275	"A modified cytidine is a cytidine base feature which has been altered." [SO:ke]	1904527	SOFA	SOFA	sequence	3	SO	biological_region	modified_cytidine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001275	"A modified cytidine is a cytidine base feature which has been altered." [SO:ke]	2928968	SOFA	SOFA	sequence	4	SO	region	modified_cytidine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001275	"A modified cytidine is a cytidine base feature which has been altered." [SO:ke]	4002182	SOFA	SOFA	sequence	5	SO	sequence_feature	modified_cytidine
SO:0001276	\N	\N	"" []	SO:0001276	"" []	46151	\N	\N	sequence	0	SO	modified_guanosine	modified_guanosine
SO:0000250	SO:0001276	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001276	"" []	490885	\N	\N	sequence	1	SO	modified_RNA_base_feature	modified_guanosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001276	"" []	1073449	\N	SOFA	sequence	2	SO	base	modified_guanosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001276	"" []	1904528	SOFA	SOFA	sequence	3	SO	biological_region	modified_guanosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001276	"" []	2928969	SOFA	SOFA	sequence	4	SO	region	modified_guanosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001276	"" []	4002183	SOFA	SOFA	sequence	5	SO	sequence_feature	modified_guanosine
SO:0001277	\N	\N	"" []	SO:0001277	"" []	46152	\N	\N	sequence	0	SO	modified_uridine	modified_uridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001277	"" []	490886	\N	\N	sequence	1	SO	modified_RNA_base_feature	modified_uridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001277	"" []	1073450	\N	SOFA	sequence	2	SO	base	modified_uridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001277	"" []	1904529	SOFA	SOFA	sequence	3	SO	biological_region	modified_uridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001277	"" []	2928970	SOFA	SOFA	sequence	4	SO	region	modified_uridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001277	"" []	4002184	SOFA	SOFA	sequence	5	SO	sequence_feature	modified_uridine
SO:0001278	\N	\N	"1-methylinosine is a modified inosine." [http://library.med.utah.edu/RNAmods/]	SO:0001278	"1-methylinosine is a modified inosine." [http://library.med.utah.edu/RNAmods/]	46153	\N	\N	sequence	0	SO	one_methylinosine	one_methylinosine
SO:0001274	SO:0001278	\N	"A modified inosine is an inosine base feature that has been altered." [SO:ke]	SO:0001278	"1-methylinosine is a modified inosine." [http://library.med.utah.edu/RNAmods/]	490887	\N	\N	sequence	1	SO	modified_inosine	one_methylinosine
SO:0001230	SO:0001274	\N	"A modified RNA base in which hypoxanthine is bound to the ribose ring." [http://library.med.utah.edu/RNAmods/, RSC:cb]	SO:0001278	"1-methylinosine is a modified inosine." [http://library.med.utah.edu/RNAmods/]	1073451	\N	\N	sequence	2	SO	inosine	one_methylinosine
SO:0000250	SO:0001230	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001278	"1-methylinosine is a modified inosine." [http://library.med.utah.edu/RNAmods/]	1904530	\N	\N	sequence	3	SO	modified_RNA_base_feature	one_methylinosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001278	"1-methylinosine is a modified inosine." [http://library.med.utah.edu/RNAmods/]	2928971	\N	SOFA	sequence	4	SO	base	one_methylinosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001278	"1-methylinosine is a modified inosine." [http://library.med.utah.edu/RNAmods/]	4002185	SOFA	SOFA	sequence	5	SO	biological_region	one_methylinosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001278	"1-methylinosine is a modified inosine." [http://library.med.utah.edu/RNAmods/]	4966555	SOFA	SOFA	sequence	6	SO	region	one_methylinosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001278	"1-methylinosine is a modified inosine." [http://library.med.utah.edu/RNAmods/]	5741306	SOFA	SOFA	sequence	7	SO	sequence_feature	one_methylinosine
SO:0001279	\N	\N	"1,2'-O-dimethylinosine is a modified inosine." [http://library.med.utah.edu/RNAmods/]	SO:0001279	"1,2'-O-dimethylinosine is a modified inosine." [http://library.med.utah.edu/RNAmods/]	46154	\N	\N	sequence	0	SO	one_two_prime_O_dimethylinosine	one_two_prime_O_dimethylinosine
SO:0001274	SO:0001279	\N	"A modified inosine is an inosine base feature that has been altered." [SO:ke]	SO:0001279	"1,2'-O-dimethylinosine is a modified inosine." [http://library.med.utah.edu/RNAmods/]	490888	\N	\N	sequence	1	SO	modified_inosine	one_two_prime_O_dimethylinosine
SO:0001230	SO:0001274	\N	"A modified RNA base in which hypoxanthine is bound to the ribose ring." [http://library.med.utah.edu/RNAmods/, RSC:cb]	SO:0001279	"1,2'-O-dimethylinosine is a modified inosine." [http://library.med.utah.edu/RNAmods/]	1073452	\N	\N	sequence	2	SO	inosine	one_two_prime_O_dimethylinosine
SO:0000250	SO:0001230	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001279	"1,2'-O-dimethylinosine is a modified inosine." [http://library.med.utah.edu/RNAmods/]	1904531	\N	\N	sequence	3	SO	modified_RNA_base_feature	one_two_prime_O_dimethylinosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001279	"1,2'-O-dimethylinosine is a modified inosine." [http://library.med.utah.edu/RNAmods/]	2928972	\N	SOFA	sequence	4	SO	base	one_two_prime_O_dimethylinosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001279	"1,2'-O-dimethylinosine is a modified inosine." [http://library.med.utah.edu/RNAmods/]	4002186	SOFA	SOFA	sequence	5	SO	biological_region	one_two_prime_O_dimethylinosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001279	"1,2'-O-dimethylinosine is a modified inosine." [http://library.med.utah.edu/RNAmods/]	4966556	SOFA	SOFA	sequence	6	SO	region	one_two_prime_O_dimethylinosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001279	"1,2'-O-dimethylinosine is a modified inosine." [http://library.med.utah.edu/RNAmods/]	5741307	SOFA	SOFA	sequence	7	SO	sequence_feature	one_two_prime_O_dimethylinosine
SO:0001280	\N	\N	"2'-O-methylinosine is a modified inosine." [http://library.med.utah.edu/RNAmods/]	SO:0001280	"2'-O-methylinosine is a modified inosine." [http://library.med.utah.edu/RNAmods/]	46155	\N	\N	sequence	0	SO	two_prime_O_methylinosine	two_prime_O_methylinosine
SO:0001274	SO:0001280	\N	"A modified inosine is an inosine base feature that has been altered." [SO:ke]	SO:0001280	"2'-O-methylinosine is a modified inosine." [http://library.med.utah.edu/RNAmods/]	490889	\N	\N	sequence	1	SO	modified_inosine	two_prime_O_methylinosine
SO:0001230	SO:0001274	\N	"A modified RNA base in which hypoxanthine is bound to the ribose ring." [http://library.med.utah.edu/RNAmods/, RSC:cb]	SO:0001280	"2'-O-methylinosine is a modified inosine." [http://library.med.utah.edu/RNAmods/]	1073453	\N	\N	sequence	2	SO	inosine	two_prime_O_methylinosine
SO:0000250	SO:0001230	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001280	"2'-O-methylinosine is a modified inosine." [http://library.med.utah.edu/RNAmods/]	1904532	\N	\N	sequence	3	SO	modified_RNA_base_feature	two_prime_O_methylinosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001280	"2'-O-methylinosine is a modified inosine." [http://library.med.utah.edu/RNAmods/]	2928973	\N	SOFA	sequence	4	SO	base	two_prime_O_methylinosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001280	"2'-O-methylinosine is a modified inosine." [http://library.med.utah.edu/RNAmods/]	4002187	SOFA	SOFA	sequence	5	SO	biological_region	two_prime_O_methylinosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001280	"2'-O-methylinosine is a modified inosine." [http://library.med.utah.edu/RNAmods/]	4966557	SOFA	SOFA	sequence	6	SO	region	two_prime_O_methylinosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001280	"2'-O-methylinosine is a modified inosine." [http://library.med.utah.edu/RNAmods/]	5741308	SOFA	SOFA	sequence	7	SO	sequence_feature	two_prime_O_methylinosine
SO:0001281	\N	\N	"3-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	SO:0001281	"3-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	46156	\N	\N	sequence	0	SO	three_methylcytidine	three_methylcytidine
SO:0001275	SO:0001281	\N	"A modified cytidine is a cytidine base feature which has been altered." [SO:ke]	SO:0001281	"3-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	490890	\N	\N	sequence	1	SO	modified_cytidine	three_methylcytidine
SO:0000250	SO:0001275	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001281	"3-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	1073454	\N	\N	sequence	2	SO	modified_RNA_base_feature	three_methylcytidine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001281	"3-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	1904533	\N	SOFA	sequence	3	SO	base	three_methylcytidine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001281	"3-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	2928974	SOFA	SOFA	sequence	4	SO	biological_region	three_methylcytidine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001281	"3-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	4002188	SOFA	SOFA	sequence	5	SO	region	three_methylcytidine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001281	"3-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	4966558	SOFA	SOFA	sequence	6	SO	sequence_feature	three_methylcytidine
SO:0001282	\N	\N	"5-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	SO:0001282	"5-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	46157	\N	\N	sequence	0	SO	five_methylcytidine	five_methylcytidine
SO:0001275	SO:0001282	\N	"A modified cytidine is a cytidine base feature which has been altered." [SO:ke]	SO:0001282	"5-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	490891	\N	\N	sequence	1	SO	modified_cytidine	five_methylcytidine
SO:0000250	SO:0001275	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001282	"5-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	1073455	\N	\N	sequence	2	SO	modified_RNA_base_feature	five_methylcytidine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001282	"5-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	1904534	\N	SOFA	sequence	3	SO	base	five_methylcytidine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001282	"5-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	2928975	SOFA	SOFA	sequence	4	SO	biological_region	five_methylcytidine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001282	"5-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	4002189	SOFA	SOFA	sequence	5	SO	region	five_methylcytidine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001282	"5-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	4966559	SOFA	SOFA	sequence	6	SO	sequence_feature	five_methylcytidine
SO:0001283	\N	\N	"2'-O-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	SO:0001283	"2'-O-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	46158	\N	\N	sequence	0	SO	two_prime_O_methylcytidine	two_prime_O_methylcytidine
SO:0001275	SO:0001283	\N	"A modified cytidine is a cytidine base feature which has been altered." [SO:ke]	SO:0001283	"2'-O-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	490892	\N	\N	sequence	1	SO	modified_cytidine	two_prime_O_methylcytidine
SO:0000250	SO:0001275	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001283	"2'-O-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	1073456	\N	\N	sequence	2	SO	modified_RNA_base_feature	two_prime_O_methylcytidine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001283	"2'-O-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	1904535	\N	SOFA	sequence	3	SO	base	two_prime_O_methylcytidine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001283	"2'-O-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	2928976	SOFA	SOFA	sequence	4	SO	biological_region	two_prime_O_methylcytidine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001283	"2'-O-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	4002190	SOFA	SOFA	sequence	5	SO	region	two_prime_O_methylcytidine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001283	"2'-O-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	4966560	SOFA	SOFA	sequence	6	SO	sequence_feature	two_prime_O_methylcytidine
SO:0001284	\N	\N	"2-thiocytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	SO:0001284	"2-thiocytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	46159	\N	\N	sequence	0	SO	two_thiocytidine	two_thiocytidine
SO:0001275	SO:0001284	\N	"A modified cytidine is a cytidine base feature which has been altered." [SO:ke]	SO:0001284	"2-thiocytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	490893	\N	\N	sequence	1	SO	modified_cytidine	two_thiocytidine
SO:0000250	SO:0001275	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001284	"2-thiocytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	1073457	\N	\N	sequence	2	SO	modified_RNA_base_feature	two_thiocytidine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001284	"2-thiocytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	1904536	\N	SOFA	sequence	3	SO	base	two_thiocytidine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001284	"2-thiocytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	2928977	SOFA	SOFA	sequence	4	SO	biological_region	two_thiocytidine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001284	"2-thiocytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	4002191	SOFA	SOFA	sequence	5	SO	region	two_thiocytidine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001284	"2-thiocytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	4966561	SOFA	SOFA	sequence	6	SO	sequence_feature	two_thiocytidine
SO:0001285	\N	\N	"N4-acetylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	SO:0001285	"N4-acetylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	46160	\N	\N	sequence	0	SO	N4_acetylcytidine	N4_acetylcytidine
SO:0001275	SO:0001285	\N	"A modified cytidine is a cytidine base feature which has been altered." [SO:ke]	SO:0001285	"N4-acetylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	490894	\N	\N	sequence	1	SO	modified_cytidine	N4_acetylcytidine
SO:0000250	SO:0001275	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001285	"N4-acetylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	1073458	\N	\N	sequence	2	SO	modified_RNA_base_feature	N4_acetylcytidine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001285	"N4-acetylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	1904537	\N	SOFA	sequence	3	SO	base	N4_acetylcytidine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001285	"N4-acetylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	2928978	SOFA	SOFA	sequence	4	SO	biological_region	N4_acetylcytidine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001285	"N4-acetylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	4002192	SOFA	SOFA	sequence	5	SO	region	N4_acetylcytidine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001285	"N4-acetylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	4966562	SOFA	SOFA	sequence	6	SO	sequence_feature	N4_acetylcytidine
SO:0001286	\N	\N	"5-formylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	SO:0001286	"5-formylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	46161	\N	\N	sequence	0	SO	five_formylcytidine	five_formylcytidine
SO:0001275	SO:0001286	\N	"A modified cytidine is a cytidine base feature which has been altered." [SO:ke]	SO:0001286	"5-formylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	490895	\N	\N	sequence	1	SO	modified_cytidine	five_formylcytidine
SO:0000250	SO:0001275	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001286	"5-formylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	1073459	\N	\N	sequence	2	SO	modified_RNA_base_feature	five_formylcytidine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001286	"5-formylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	1904538	\N	SOFA	sequence	3	SO	base	five_formylcytidine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001286	"5-formylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	2928979	SOFA	SOFA	sequence	4	SO	biological_region	five_formylcytidine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001286	"5-formylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	4002193	SOFA	SOFA	sequence	5	SO	region	five_formylcytidine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001286	"5-formylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	4966563	SOFA	SOFA	sequence	6	SO	sequence_feature	five_formylcytidine
SO:0001287	\N	\N	"5,2'-O-dimethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	SO:0001287	"5,2'-O-dimethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	46162	\N	\N	sequence	0	SO	five_two_prime_O_dimethylcytidine	five_two_prime_O_dimethylcytidine
SO:0001275	SO:0001287	\N	"A modified cytidine is a cytidine base feature which has been altered." [SO:ke]	SO:0001287	"5,2'-O-dimethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	490896	\N	\N	sequence	1	SO	modified_cytidine	five_two_prime_O_dimethylcytidine
SO:0000250	SO:0001275	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001287	"5,2'-O-dimethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	1073460	\N	\N	sequence	2	SO	modified_RNA_base_feature	five_two_prime_O_dimethylcytidine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001287	"5,2'-O-dimethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	1904539	\N	SOFA	sequence	3	SO	base	five_two_prime_O_dimethylcytidine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001287	"5,2'-O-dimethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	2928980	SOFA	SOFA	sequence	4	SO	biological_region	five_two_prime_O_dimethylcytidine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001287	"5,2'-O-dimethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	4002194	SOFA	SOFA	sequence	5	SO	region	five_two_prime_O_dimethylcytidine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001287	"5,2'-O-dimethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	4966564	SOFA	SOFA	sequence	6	SO	sequence_feature	five_two_prime_O_dimethylcytidine
SO:0001288	\N	\N	"N4-acetyl-2'-O-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	SO:0001288	"N4-acetyl-2'-O-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	46163	\N	\N	sequence	0	SO	N4_acetyl_2_prime_O_methylcytidine	N4_acetyl_2_prime_O_methylcytidine
SO:0001275	SO:0001288	\N	"A modified cytidine is a cytidine base feature which has been altered." [SO:ke]	SO:0001288	"N4-acetyl-2'-O-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	490897	\N	\N	sequence	1	SO	modified_cytidine	N4_acetyl_2_prime_O_methylcytidine
SO:0000250	SO:0001275	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001288	"N4-acetyl-2'-O-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	1073461	\N	\N	sequence	2	SO	modified_RNA_base_feature	N4_acetyl_2_prime_O_methylcytidine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001288	"N4-acetyl-2'-O-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	1904540	\N	SOFA	sequence	3	SO	base	N4_acetyl_2_prime_O_methylcytidine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001288	"N4-acetyl-2'-O-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	2928981	SOFA	SOFA	sequence	4	SO	biological_region	N4_acetyl_2_prime_O_methylcytidine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001288	"N4-acetyl-2'-O-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	4002195	SOFA	SOFA	sequence	5	SO	region	N4_acetyl_2_prime_O_methylcytidine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001288	"N4-acetyl-2'-O-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	4966565	SOFA	SOFA	sequence	6	SO	sequence_feature	N4_acetyl_2_prime_O_methylcytidine
SO:0001289	\N	\N	"Lysidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	SO:0001289	"Lysidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	46164	\N	\N	sequence	0	SO	lysidine	lysidine
SO:0001275	SO:0001289	\N	"A modified cytidine is a cytidine base feature which has been altered." [SO:ke]	SO:0001289	"Lysidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	490898	\N	\N	sequence	1	SO	modified_cytidine	lysidine
SO:0000250	SO:0001275	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001289	"Lysidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	1073462	\N	\N	sequence	2	SO	modified_RNA_base_feature	lysidine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001289	"Lysidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	1904541	\N	SOFA	sequence	3	SO	base	lysidine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001289	"Lysidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	2928982	SOFA	SOFA	sequence	4	SO	biological_region	lysidine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001289	"Lysidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	4002196	SOFA	SOFA	sequence	5	SO	region	lysidine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001289	"Lysidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	4966566	SOFA	SOFA	sequence	6	SO	sequence_feature	lysidine
SO:0001290	\N	\N	"N4-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	SO:0001290	"N4-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	46165	\N	\N	sequence	0	SO	N4_methylcytidine	N4_methylcytidine
SO:0001275	SO:0001290	\N	"A modified cytidine is a cytidine base feature which has been altered." [SO:ke]	SO:0001290	"N4-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	490899	\N	\N	sequence	1	SO	modified_cytidine	N4_methylcytidine
SO:0000250	SO:0001275	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001290	"N4-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	1073463	\N	\N	sequence	2	SO	modified_RNA_base_feature	N4_methylcytidine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001290	"N4-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	1904542	\N	SOFA	sequence	3	SO	base	N4_methylcytidine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001290	"N4-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	2928983	SOFA	SOFA	sequence	4	SO	biological_region	N4_methylcytidine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001290	"N4-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	4002197	SOFA	SOFA	sequence	5	SO	region	N4_methylcytidine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001290	"N4-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	4966567	SOFA	SOFA	sequence	6	SO	sequence_feature	N4_methylcytidine
SO:0001291	\N	\N	"N4,2'-O-dimethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	SO:0001291	"N4,2'-O-dimethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	46166	\N	\N	sequence	0	SO	N4_2_prime_O_dimethylcytidine	N4_2_prime_O_dimethylcytidine
SO:0001275	SO:0001291	\N	"A modified cytidine is a cytidine base feature which has been altered." [SO:ke]	SO:0001291	"N4,2'-O-dimethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	490900	\N	\N	sequence	1	SO	modified_cytidine	N4_2_prime_O_dimethylcytidine
SO:0000250	SO:0001275	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001291	"N4,2'-O-dimethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	1073464	\N	\N	sequence	2	SO	modified_RNA_base_feature	N4_2_prime_O_dimethylcytidine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001291	"N4,2'-O-dimethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	1904543	\N	SOFA	sequence	3	SO	base	N4_2_prime_O_dimethylcytidine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001291	"N4,2'-O-dimethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	2928984	SOFA	SOFA	sequence	4	SO	biological_region	N4_2_prime_O_dimethylcytidine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001291	"N4,2'-O-dimethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	4002198	SOFA	SOFA	sequence	5	SO	region	N4_2_prime_O_dimethylcytidine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001291	"N4,2'-O-dimethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	4966568	SOFA	SOFA	sequence	6	SO	sequence_feature	N4_2_prime_O_dimethylcytidine
SO:0001292	\N	\N	"5-hydroxymethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	SO:0001292	"5-hydroxymethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	46167	\N	\N	sequence	0	SO	five_hydroxymethylcytidine	five_hydroxymethylcytidine
SO:0001275	SO:0001292	\N	"A modified cytidine is a cytidine base feature which has been altered." [SO:ke]	SO:0001292	"5-hydroxymethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	490901	\N	\N	sequence	1	SO	modified_cytidine	five_hydroxymethylcytidine
SO:0000250	SO:0001275	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001292	"5-hydroxymethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	1073465	\N	\N	sequence	2	SO	modified_RNA_base_feature	five_hydroxymethylcytidine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001292	"5-hydroxymethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	1904544	\N	SOFA	sequence	3	SO	base	five_hydroxymethylcytidine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001292	"5-hydroxymethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	2928985	SOFA	SOFA	sequence	4	SO	biological_region	five_hydroxymethylcytidine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001292	"5-hydroxymethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	4002199	SOFA	SOFA	sequence	5	SO	region	five_hydroxymethylcytidine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001292	"5-hydroxymethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	4966569	SOFA	SOFA	sequence	6	SO	sequence_feature	five_hydroxymethylcytidine
SO:0001293	\N	\N	"5-formyl-2'-O-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	SO:0001293	"5-formyl-2'-O-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	46168	\N	\N	sequence	0	SO	five_formyl_two_prime_O_methylcytidine	five_formyl_two_prime_O_methylcytidine
SO:0001275	SO:0001293	\N	"A modified cytidine is a cytidine base feature which has been altered." [SO:ke]	SO:0001293	"5-formyl-2'-O-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	490902	\N	\N	sequence	1	SO	modified_cytidine	five_formyl_two_prime_O_methylcytidine
SO:0000250	SO:0001275	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001293	"5-formyl-2'-O-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	1073466	\N	\N	sequence	2	SO	modified_RNA_base_feature	five_formyl_two_prime_O_methylcytidine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001293	"5-formyl-2'-O-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	1904545	\N	SOFA	sequence	3	SO	base	five_formyl_two_prime_O_methylcytidine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001293	"5-formyl-2'-O-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	2928986	SOFA	SOFA	sequence	4	SO	biological_region	five_formyl_two_prime_O_methylcytidine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001293	"5-formyl-2'-O-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	4002200	SOFA	SOFA	sequence	5	SO	region	five_formyl_two_prime_O_methylcytidine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001293	"5-formyl-2'-O-methylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	4966570	SOFA	SOFA	sequence	6	SO	sequence_feature	five_formyl_two_prime_O_methylcytidine
SO:0001294	\N	\N	"N4_N4_2_prime_O_trimethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	SO:0001294	"N4_N4_2_prime_O_trimethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	46169	\N	\N	sequence	0	SO	N4_N4_2_prime_O_trimethylcytidine	N4_N4_2_prime_O_trimethylcytidine
SO:0001275	SO:0001294	\N	"A modified cytidine is a cytidine base feature which has been altered." [SO:ke]	SO:0001294	"N4_N4_2_prime_O_trimethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	490903	\N	\N	sequence	1	SO	modified_cytidine	N4_N4_2_prime_O_trimethylcytidine
SO:0000250	SO:0001275	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001294	"N4_N4_2_prime_O_trimethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	1073467	\N	\N	sequence	2	SO	modified_RNA_base_feature	N4_N4_2_prime_O_trimethylcytidine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001294	"N4_N4_2_prime_O_trimethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	1904546	\N	SOFA	sequence	3	SO	base	N4_N4_2_prime_O_trimethylcytidine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001294	"N4_N4_2_prime_O_trimethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	2928987	SOFA	SOFA	sequence	4	SO	biological_region	N4_N4_2_prime_O_trimethylcytidine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001294	"N4_N4_2_prime_O_trimethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	4002201	SOFA	SOFA	sequence	5	SO	region	N4_N4_2_prime_O_trimethylcytidine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001294	"N4_N4_2_prime_O_trimethylcytidine is a modified cytidine." [http://library.med.utah.edu/RNAmods/]	4966571	SOFA	SOFA	sequence	6	SO	sequence_feature	N4_N4_2_prime_O_trimethylcytidine
SO:0001295	\N	\N	"1_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	SO:0001295	"1_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	46170	\N	\N	sequence	0	SO	one_methyladenosine	one_methyladenosine
SO:0001273	SO:0001295	\N	"A modified adenine is an adenine base feature that has been altered." [SO:ke]	SO:0001295	"1_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	490904	\N	\N	sequence	1	SO	modified_adenosine	one_methyladenosine
SO:0000250	SO:0001273	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001295	"1_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1073468	\N	\N	sequence	2	SO	modified_RNA_base_feature	one_methyladenosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001295	"1_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1904547	\N	SOFA	sequence	3	SO	base	one_methyladenosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001295	"1_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	2928988	SOFA	SOFA	sequence	4	SO	biological_region	one_methyladenosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001295	"1_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4002202	SOFA	SOFA	sequence	5	SO	region	one_methyladenosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001295	"1_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4966572	SOFA	SOFA	sequence	6	SO	sequence_feature	one_methyladenosine
SO:0001296	\N	\N	"2_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	SO:0001296	"2_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	46171	\N	\N	sequence	0	SO	two_methyladenosine	two_methyladenosine
SO:0001273	SO:0001296	\N	"A modified adenine is an adenine base feature that has been altered." [SO:ke]	SO:0001296	"2_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	490905	\N	\N	sequence	1	SO	modified_adenosine	two_methyladenosine
SO:0000250	SO:0001273	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001296	"2_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1073469	\N	\N	sequence	2	SO	modified_RNA_base_feature	two_methyladenosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001296	"2_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1904548	\N	SOFA	sequence	3	SO	base	two_methyladenosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001296	"2_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	2928989	SOFA	SOFA	sequence	4	SO	biological_region	two_methyladenosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001296	"2_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4002203	SOFA	SOFA	sequence	5	SO	region	two_methyladenosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001296	"2_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4966573	SOFA	SOFA	sequence	6	SO	sequence_feature	two_methyladenosine
SO:0001297	\N	\N	"N6_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	SO:0001297	"N6_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	46172	\N	\N	sequence	0	SO	N6_methyladenosine	N6_methyladenosine
SO:0001273	SO:0001297	\N	"A modified adenine is an adenine base feature that has been altered." [SO:ke]	SO:0001297	"N6_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	490906	\N	\N	sequence	1	SO	modified_adenosine	N6_methyladenosine
SO:0000250	SO:0001273	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001297	"N6_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1073470	\N	\N	sequence	2	SO	modified_RNA_base_feature	N6_methyladenosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001297	"N6_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1904549	\N	SOFA	sequence	3	SO	base	N6_methyladenosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001297	"N6_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	2928990	SOFA	SOFA	sequence	4	SO	biological_region	N6_methyladenosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001297	"N6_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4002204	SOFA	SOFA	sequence	5	SO	region	N6_methyladenosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001297	"N6_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4966574	SOFA	SOFA	sequence	6	SO	sequence_feature	N6_methyladenosine
SO:0001298	\N	\N	"2prime_O_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	SO:0001298	"2prime_O_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	46173	\N	\N	sequence	0	SO	two_prime_O_methyladenosine	two_prime_O_methyladenosine
SO:0001273	SO:0001298	\N	"A modified adenine is an adenine base feature that has been altered." [SO:ke]	SO:0001298	"2prime_O_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	490907	\N	\N	sequence	1	SO	modified_adenosine	two_prime_O_methyladenosine
SO:0000250	SO:0001273	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001298	"2prime_O_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1073471	\N	\N	sequence	2	SO	modified_RNA_base_feature	two_prime_O_methyladenosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001298	"2prime_O_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1904550	\N	SOFA	sequence	3	SO	base	two_prime_O_methyladenosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001298	"2prime_O_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	2928991	SOFA	SOFA	sequence	4	SO	biological_region	two_prime_O_methyladenosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001298	"2prime_O_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4002205	SOFA	SOFA	sequence	5	SO	region	two_prime_O_methyladenosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001298	"2prime_O_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4966575	SOFA	SOFA	sequence	6	SO	sequence_feature	two_prime_O_methyladenosine
SO:0001299	\N	\N	"2_methylthio_N6_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	SO:0001299	"2_methylthio_N6_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	46174	\N	\N	sequence	0	SO	two_methylthio_N6_methyladenosine	two_methylthio_N6_methyladenosine
SO:0001273	SO:0001299	\N	"A modified adenine is an adenine base feature that has been altered." [SO:ke]	SO:0001299	"2_methylthio_N6_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	490908	\N	\N	sequence	1	SO	modified_adenosine	two_methylthio_N6_methyladenosine
SO:0000250	SO:0001273	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001299	"2_methylthio_N6_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1073472	\N	\N	sequence	2	SO	modified_RNA_base_feature	two_methylthio_N6_methyladenosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001299	"2_methylthio_N6_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1904551	\N	SOFA	sequence	3	SO	base	two_methylthio_N6_methyladenosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001299	"2_methylthio_N6_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	2928992	SOFA	SOFA	sequence	4	SO	biological_region	two_methylthio_N6_methyladenosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001299	"2_methylthio_N6_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4002206	SOFA	SOFA	sequence	5	SO	region	two_methylthio_N6_methyladenosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001299	"2_methylthio_N6_methyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4966576	SOFA	SOFA	sequence	6	SO	sequence_feature	two_methylthio_N6_methyladenosine
SO:0001300	\N	\N	"N6_isopentenyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	SO:0001300	"N6_isopentenyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	46175	\N	\N	sequence	0	SO	N6_isopentenyladenosine	N6_isopentenyladenosine
SO:0001273	SO:0001300	\N	"A modified adenine is an adenine base feature that has been altered." [SO:ke]	SO:0001300	"N6_isopentenyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	490909	\N	\N	sequence	1	SO	modified_adenosine	N6_isopentenyladenosine
SO:0000250	SO:0001273	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001300	"N6_isopentenyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1073473	\N	\N	sequence	2	SO	modified_RNA_base_feature	N6_isopentenyladenosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001300	"N6_isopentenyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1904552	\N	SOFA	sequence	3	SO	base	N6_isopentenyladenosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001300	"N6_isopentenyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	2928993	SOFA	SOFA	sequence	4	SO	biological_region	N6_isopentenyladenosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001300	"N6_isopentenyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4002207	SOFA	SOFA	sequence	5	SO	region	N6_isopentenyladenosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001300	"N6_isopentenyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4966577	SOFA	SOFA	sequence	6	SO	sequence_feature	N6_isopentenyladenosine
SO:0001301	\N	\N	"2_methylthio_N6_isopentenyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	SO:0001301	"2_methylthio_N6_isopentenyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	46176	\N	\N	sequence	0	SO	two_methylthio_N6_isopentenyladenosine	two_methylthio_N6_isopentenyladenosine
SO:0001273	SO:0001301	\N	"A modified adenine is an adenine base feature that has been altered." [SO:ke]	SO:0001301	"2_methylthio_N6_isopentenyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	490910	\N	\N	sequence	1	SO	modified_adenosine	two_methylthio_N6_isopentenyladenosine
SO:0000250	SO:0001273	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001301	"2_methylthio_N6_isopentenyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1073474	\N	\N	sequence	2	SO	modified_RNA_base_feature	two_methylthio_N6_isopentenyladenosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001301	"2_methylthio_N6_isopentenyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1904553	\N	SOFA	sequence	3	SO	base	two_methylthio_N6_isopentenyladenosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001301	"2_methylthio_N6_isopentenyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	2928994	SOFA	SOFA	sequence	4	SO	biological_region	two_methylthio_N6_isopentenyladenosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001301	"2_methylthio_N6_isopentenyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4002208	SOFA	SOFA	sequence	5	SO	region	two_methylthio_N6_isopentenyladenosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001301	"2_methylthio_N6_isopentenyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4966578	SOFA	SOFA	sequence	6	SO	sequence_feature	two_methylthio_N6_isopentenyladenosine
SO:0001302	\N	\N	"N6_cis_hydroxyisopentenyl_adenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	SO:0001302	"N6_cis_hydroxyisopentenyl_adenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	46177	\N	\N	sequence	0	SO	N6_cis_hydroxyisopentenyl_adenosine	N6_cis_hydroxyisopentenyl_adenosine
SO:0001273	SO:0001302	\N	"A modified adenine is an adenine base feature that has been altered." [SO:ke]	SO:0001302	"N6_cis_hydroxyisopentenyl_adenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	490911	\N	\N	sequence	1	SO	modified_adenosine	N6_cis_hydroxyisopentenyl_adenosine
SO:0000250	SO:0001273	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001302	"N6_cis_hydroxyisopentenyl_adenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1073475	\N	\N	sequence	2	SO	modified_RNA_base_feature	N6_cis_hydroxyisopentenyl_adenosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001302	"N6_cis_hydroxyisopentenyl_adenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1904554	\N	SOFA	sequence	3	SO	base	N6_cis_hydroxyisopentenyl_adenosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001302	"N6_cis_hydroxyisopentenyl_adenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	2928995	SOFA	SOFA	sequence	4	SO	biological_region	N6_cis_hydroxyisopentenyl_adenosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001302	"N6_cis_hydroxyisopentenyl_adenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4002209	SOFA	SOFA	sequence	5	SO	region	N6_cis_hydroxyisopentenyl_adenosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001302	"N6_cis_hydroxyisopentenyl_adenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4966579	SOFA	SOFA	sequence	6	SO	sequence_feature	N6_cis_hydroxyisopentenyl_adenosine
SO:0001303	\N	\N	"2_methylthio_N6_cis_hydroxyisopentenyl_adenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	SO:0001303	"2_methylthio_N6_cis_hydroxyisopentenyl_adenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	46178	\N	\N	sequence	0	SO	two_methylthio_N6_cis_hydroxyisopentenyl_adenosine	two_methylthio_N6_cis_hydroxyisopentenyl_adenosine
SO:0001273	SO:0001303	\N	"A modified adenine is an adenine base feature that has been altered." [SO:ke]	SO:0001303	"2_methylthio_N6_cis_hydroxyisopentenyl_adenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	490912	\N	\N	sequence	1	SO	modified_adenosine	two_methylthio_N6_cis_hydroxyisopentenyl_adenosine
SO:0000250	SO:0001273	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001303	"2_methylthio_N6_cis_hydroxyisopentenyl_adenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1073476	\N	\N	sequence	2	SO	modified_RNA_base_feature	two_methylthio_N6_cis_hydroxyisopentenyl_adenosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001303	"2_methylthio_N6_cis_hydroxyisopentenyl_adenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1904555	\N	SOFA	sequence	3	SO	base	two_methylthio_N6_cis_hydroxyisopentenyl_adenosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001303	"2_methylthio_N6_cis_hydroxyisopentenyl_adenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	2928996	SOFA	SOFA	sequence	4	SO	biological_region	two_methylthio_N6_cis_hydroxyisopentenyl_adenosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001303	"2_methylthio_N6_cis_hydroxyisopentenyl_adenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4002210	SOFA	SOFA	sequence	5	SO	region	two_methylthio_N6_cis_hydroxyisopentenyl_adenosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001303	"2_methylthio_N6_cis_hydroxyisopentenyl_adenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4966580	SOFA	SOFA	sequence	6	SO	sequence_feature	two_methylthio_N6_cis_hydroxyisopentenyl_adenosine
SO:0001304	\N	\N	"N6_glycinylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	SO:0001304	"N6_glycinylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	46179	\N	\N	sequence	0	SO	N6_glycinylcarbamoyladenosine	N6_glycinylcarbamoyladenosine
SO:0001273	SO:0001304	\N	"A modified adenine is an adenine base feature that has been altered." [SO:ke]	SO:0001304	"N6_glycinylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	490913	\N	\N	sequence	1	SO	modified_adenosine	N6_glycinylcarbamoyladenosine
SO:0000250	SO:0001273	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001304	"N6_glycinylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1073477	\N	\N	sequence	2	SO	modified_RNA_base_feature	N6_glycinylcarbamoyladenosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001304	"N6_glycinylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1904556	\N	SOFA	sequence	3	SO	base	N6_glycinylcarbamoyladenosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001304	"N6_glycinylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	2928997	SOFA	SOFA	sequence	4	SO	biological_region	N6_glycinylcarbamoyladenosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001304	"N6_glycinylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4002211	SOFA	SOFA	sequence	5	SO	region	N6_glycinylcarbamoyladenosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001304	"N6_glycinylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4966581	SOFA	SOFA	sequence	6	SO	sequence_feature	N6_glycinylcarbamoyladenosine
SO:0001305	\N	\N	"N6_threonylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	SO:0001305	"N6_threonylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	46180	\N	\N	sequence	0	SO	N6_threonylcarbamoyladenosine	N6_threonylcarbamoyladenosine
SO:0001273	SO:0001305	\N	"A modified adenine is an adenine base feature that has been altered." [SO:ke]	SO:0001305	"N6_threonylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	490914	\N	\N	sequence	1	SO	modified_adenosine	N6_threonylcarbamoyladenosine
SO:0000250	SO:0001273	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001305	"N6_threonylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1073478	\N	\N	sequence	2	SO	modified_RNA_base_feature	N6_threonylcarbamoyladenosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001305	"N6_threonylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1904557	\N	SOFA	sequence	3	SO	base	N6_threonylcarbamoyladenosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001305	"N6_threonylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	2928998	SOFA	SOFA	sequence	4	SO	biological_region	N6_threonylcarbamoyladenosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001305	"N6_threonylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4002212	SOFA	SOFA	sequence	5	SO	region	N6_threonylcarbamoyladenosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001305	"N6_threonylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4966582	SOFA	SOFA	sequence	6	SO	sequence_feature	N6_threonylcarbamoyladenosine
SO:0001306	\N	\N	"2_methylthio_N6_threonyl_carbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	SO:0001306	"2_methylthio_N6_threonyl_carbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	46181	\N	\N	sequence	0	SO	two_methylthio_N6_threonyl_carbamoyladenosine	two_methylthio_N6_threonyl_carbamoyladenosine
SO:0001273	SO:0001306	\N	"A modified adenine is an adenine base feature that has been altered." [SO:ke]	SO:0001306	"2_methylthio_N6_threonyl_carbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	490915	\N	\N	sequence	1	SO	modified_adenosine	two_methylthio_N6_threonyl_carbamoyladenosine
SO:0000250	SO:0001273	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001306	"2_methylthio_N6_threonyl_carbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1073479	\N	\N	sequence	2	SO	modified_RNA_base_feature	two_methylthio_N6_threonyl_carbamoyladenosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001306	"2_methylthio_N6_threonyl_carbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1904558	\N	SOFA	sequence	3	SO	base	two_methylthio_N6_threonyl_carbamoyladenosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001306	"2_methylthio_N6_threonyl_carbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	2928999	SOFA	SOFA	sequence	4	SO	biological_region	two_methylthio_N6_threonyl_carbamoyladenosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001306	"2_methylthio_N6_threonyl_carbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4002213	SOFA	SOFA	sequence	5	SO	region	two_methylthio_N6_threonyl_carbamoyladenosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001306	"2_methylthio_N6_threonyl_carbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4966583	SOFA	SOFA	sequence	6	SO	sequence_feature	two_methylthio_N6_threonyl_carbamoyladenosine
SO:0001307	\N	\N	"N6_methyl_N6_threonylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	SO:0001307	"N6_methyl_N6_threonylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	46182	\N	\N	sequence	0	SO	N6_methyl_N6_threonylcarbamoyladenosine	N6_methyl_N6_threonylcarbamoyladenosine
SO:0001273	SO:0001307	\N	"A modified adenine is an adenine base feature that has been altered." [SO:ke]	SO:0001307	"N6_methyl_N6_threonylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	490916	\N	\N	sequence	1	SO	modified_adenosine	N6_methyl_N6_threonylcarbamoyladenosine
SO:0000250	SO:0001273	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001307	"N6_methyl_N6_threonylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1073480	\N	\N	sequence	2	SO	modified_RNA_base_feature	N6_methyl_N6_threonylcarbamoyladenosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001307	"N6_methyl_N6_threonylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1904559	\N	SOFA	sequence	3	SO	base	N6_methyl_N6_threonylcarbamoyladenosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001307	"N6_methyl_N6_threonylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	2929000	SOFA	SOFA	sequence	4	SO	biological_region	N6_methyl_N6_threonylcarbamoyladenosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001307	"N6_methyl_N6_threonylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4002214	SOFA	SOFA	sequence	5	SO	region	N6_methyl_N6_threonylcarbamoyladenosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001307	"N6_methyl_N6_threonylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4966584	SOFA	SOFA	sequence	6	SO	sequence_feature	N6_methyl_N6_threonylcarbamoyladenosine
SO:0001308	\N	\N	"N6_hydroxynorvalylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	SO:0001308	"N6_hydroxynorvalylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	46183	\N	\N	sequence	0	SO	N6_hydroxynorvalylcarbamoyladenosine	N6_hydroxynorvalylcarbamoyladenosine
SO:0001273	SO:0001308	\N	"A modified adenine is an adenine base feature that has been altered." [SO:ke]	SO:0001308	"N6_hydroxynorvalylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	490917	\N	\N	sequence	1	SO	modified_adenosine	N6_hydroxynorvalylcarbamoyladenosine
SO:0000250	SO:0001273	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001308	"N6_hydroxynorvalylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1073481	\N	\N	sequence	2	SO	modified_RNA_base_feature	N6_hydroxynorvalylcarbamoyladenosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001308	"N6_hydroxynorvalylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1904560	\N	SOFA	sequence	3	SO	base	N6_hydroxynorvalylcarbamoyladenosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001308	"N6_hydroxynorvalylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	2929001	SOFA	SOFA	sequence	4	SO	biological_region	N6_hydroxynorvalylcarbamoyladenosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001308	"N6_hydroxynorvalylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4002215	SOFA	SOFA	sequence	5	SO	region	N6_hydroxynorvalylcarbamoyladenosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001308	"N6_hydroxynorvalylcarbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4966585	SOFA	SOFA	sequence	6	SO	sequence_feature	N6_hydroxynorvalylcarbamoyladenosine
SO:0001309	\N	\N	"2_methylthio_N6_hydroxynorvalyl_carbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	SO:0001309	"2_methylthio_N6_hydroxynorvalyl_carbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	46184	\N	\N	sequence	0	SO	two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine	two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine
SO:0001273	SO:0001309	\N	"A modified adenine is an adenine base feature that has been altered." [SO:ke]	SO:0001309	"2_methylthio_N6_hydroxynorvalyl_carbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	490918	\N	\N	sequence	1	SO	modified_adenosine	two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine
SO:0000250	SO:0001273	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001309	"2_methylthio_N6_hydroxynorvalyl_carbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1073482	\N	\N	sequence	2	SO	modified_RNA_base_feature	two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001309	"2_methylthio_N6_hydroxynorvalyl_carbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1904561	\N	SOFA	sequence	3	SO	base	two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001309	"2_methylthio_N6_hydroxynorvalyl_carbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	2929002	SOFA	SOFA	sequence	4	SO	biological_region	two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001309	"2_methylthio_N6_hydroxynorvalyl_carbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4002216	SOFA	SOFA	sequence	5	SO	region	two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001309	"2_methylthio_N6_hydroxynorvalyl_carbamoyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4966586	SOFA	SOFA	sequence	6	SO	sequence_feature	two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine
SO:0001310	\N	\N	"2prime_O_ribosyladenosine_phosphate is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	SO:0001310	"2prime_O_ribosyladenosine_phosphate is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	46185	\N	\N	sequence	0	SO	two_prime_O_ribosyladenosine_phosphate	two_prime_O_ribosyladenosine_phosphate
SO:0001273	SO:0001310	\N	"A modified adenine is an adenine base feature that has been altered." [SO:ke]	SO:0001310	"2prime_O_ribosyladenosine_phosphate is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	490919	\N	\N	sequence	1	SO	modified_adenosine	two_prime_O_ribosyladenosine_phosphate
SO:0000250	SO:0001273	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001310	"2prime_O_ribosyladenosine_phosphate is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1073483	\N	\N	sequence	2	SO	modified_RNA_base_feature	two_prime_O_ribosyladenosine_phosphate
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001310	"2prime_O_ribosyladenosine_phosphate is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1904562	\N	SOFA	sequence	3	SO	base	two_prime_O_ribosyladenosine_phosphate
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001310	"2prime_O_ribosyladenosine_phosphate is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	2929003	SOFA	SOFA	sequence	4	SO	biological_region	two_prime_O_ribosyladenosine_phosphate
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001310	"2prime_O_ribosyladenosine_phosphate is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4002217	SOFA	SOFA	sequence	5	SO	region	two_prime_O_ribosyladenosine_phosphate
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001310	"2prime_O_ribosyladenosine_phosphate is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4966587	SOFA	SOFA	sequence	6	SO	sequence_feature	two_prime_O_ribosyladenosine_phosphate
SO:0001311	\N	\N	"N6_N6_dimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	SO:0001311	"N6_N6_dimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	46186	\N	\N	sequence	0	SO	N6_N6_dimethyladenosine	N6_N6_dimethyladenosine
SO:0001273	SO:0001311	\N	"A modified adenine is an adenine base feature that has been altered." [SO:ke]	SO:0001311	"N6_N6_dimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	490920	\N	\N	sequence	1	SO	modified_adenosine	N6_N6_dimethyladenosine
SO:0000250	SO:0001273	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001311	"N6_N6_dimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1073484	\N	\N	sequence	2	SO	modified_RNA_base_feature	N6_N6_dimethyladenosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001311	"N6_N6_dimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1904563	\N	SOFA	sequence	3	SO	base	N6_N6_dimethyladenosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001311	"N6_N6_dimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	2929004	SOFA	SOFA	sequence	4	SO	biological_region	N6_N6_dimethyladenosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001311	"N6_N6_dimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4002218	SOFA	SOFA	sequence	5	SO	region	N6_N6_dimethyladenosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001311	"N6_N6_dimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4966588	SOFA	SOFA	sequence	6	SO	sequence_feature	N6_N6_dimethyladenosine
SO:0001312	\N	\N	"N6_2prime_O_dimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	SO:0001312	"N6_2prime_O_dimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	46187	\N	\N	sequence	0	SO	N6_2_prime_O_dimethyladenosine	N6_2_prime_O_dimethyladenosine
SO:0001273	SO:0001312	\N	"A modified adenine is an adenine base feature that has been altered." [SO:ke]	SO:0001312	"N6_2prime_O_dimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	490921	\N	\N	sequence	1	SO	modified_adenosine	N6_2_prime_O_dimethyladenosine
SO:0000250	SO:0001273	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001312	"N6_2prime_O_dimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1073485	\N	\N	sequence	2	SO	modified_RNA_base_feature	N6_2_prime_O_dimethyladenosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001312	"N6_2prime_O_dimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1904564	\N	SOFA	sequence	3	SO	base	N6_2_prime_O_dimethyladenosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001312	"N6_2prime_O_dimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	2929005	SOFA	SOFA	sequence	4	SO	biological_region	N6_2_prime_O_dimethyladenosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001312	"N6_2prime_O_dimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4002219	SOFA	SOFA	sequence	5	SO	region	N6_2_prime_O_dimethyladenosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001312	"N6_2prime_O_dimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4966589	SOFA	SOFA	sequence	6	SO	sequence_feature	N6_2_prime_O_dimethyladenosine
SO:0001313	\N	\N	"N6_N6_2prime_O_trimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	SO:0001313	"N6_N6_2prime_O_trimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	46188	\N	\N	sequence	0	SO	N6_N6_2_prime_O_trimethyladenosine	N6_N6_2_prime_O_trimethyladenosine
SO:0001273	SO:0001313	\N	"A modified adenine is an adenine base feature that has been altered." [SO:ke]	SO:0001313	"N6_N6_2prime_O_trimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	490922	\N	\N	sequence	1	SO	modified_adenosine	N6_N6_2_prime_O_trimethyladenosine
SO:0000250	SO:0001273	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001313	"N6_N6_2prime_O_trimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1073486	\N	\N	sequence	2	SO	modified_RNA_base_feature	N6_N6_2_prime_O_trimethyladenosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001313	"N6_N6_2prime_O_trimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1904565	\N	SOFA	sequence	3	SO	base	N6_N6_2_prime_O_trimethyladenosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001313	"N6_N6_2prime_O_trimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	2929006	SOFA	SOFA	sequence	4	SO	biological_region	N6_N6_2_prime_O_trimethyladenosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001313	"N6_N6_2prime_O_trimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4002220	SOFA	SOFA	sequence	5	SO	region	N6_N6_2_prime_O_trimethyladenosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001313	"N6_N6_2prime_O_trimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4966590	SOFA	SOFA	sequence	6	SO	sequence_feature	N6_N6_2_prime_O_trimethyladenosine
SO:0001314	\N	\N	"1,2'-O-dimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	SO:0001314	"1,2'-O-dimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	46189	\N	\N	sequence	0	SO	one_two_prime_O_dimethyladenosine	one_two_prime_O_dimethyladenosine
SO:0001273	SO:0001314	\N	"A modified adenine is an adenine base feature that has been altered." [SO:ke]	SO:0001314	"1,2'-O-dimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	490923	\N	\N	sequence	1	SO	modified_adenosine	one_two_prime_O_dimethyladenosine
SO:0000250	SO:0001273	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001314	"1,2'-O-dimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1073487	\N	\N	sequence	2	SO	modified_RNA_base_feature	one_two_prime_O_dimethyladenosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001314	"1,2'-O-dimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1904566	\N	SOFA	sequence	3	SO	base	one_two_prime_O_dimethyladenosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001314	"1,2'-O-dimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	2929007	SOFA	SOFA	sequence	4	SO	biological_region	one_two_prime_O_dimethyladenosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001314	"1,2'-O-dimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4002221	SOFA	SOFA	sequence	5	SO	region	one_two_prime_O_dimethyladenosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001314	"1,2'-O-dimethyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4966591	SOFA	SOFA	sequence	6	SO	sequence_feature	one_two_prime_O_dimethyladenosine
SO:0001315	\N	\N	"N6_acetyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	SO:0001315	"N6_acetyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	46190	\N	\N	sequence	0	SO	N6_acetyladenosine	N6_acetyladenosine
SO:0001273	SO:0001315	\N	"A modified adenine is an adenine base feature that has been altered." [SO:ke]	SO:0001315	"N6_acetyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	490924	\N	\N	sequence	1	SO	modified_adenosine	N6_acetyladenosine
SO:0000250	SO:0001273	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001315	"N6_acetyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1073488	\N	\N	sequence	2	SO	modified_RNA_base_feature	N6_acetyladenosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001315	"N6_acetyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	1904567	\N	SOFA	sequence	3	SO	base	N6_acetyladenosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001315	"N6_acetyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	2929008	SOFA	SOFA	sequence	4	SO	biological_region	N6_acetyladenosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001315	"N6_acetyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4002222	SOFA	SOFA	sequence	5	SO	region	N6_acetyladenosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001315	"N6_acetyladenosine is a modified adenosine." [http://library.med.utah.edu/RNAmods/]	4966592	SOFA	SOFA	sequence	6	SO	sequence_feature	N6_acetyladenosine
SO:0001316	\N	\N	"7-deazaguanosine is a modified guanosine." [http://library.med.utah.edu/RNAmods/]	SO:0001316	"7-deazaguanosine is a modified guanosine." [http://library.med.utah.edu/RNAmods/]	46191	\N	\N	sequence	0	SO	seven_deazaguanosine	seven_deazaguanosine
SO:0001276	SO:0001316	\N	"" []	SO:0001316	"7-deazaguanosine is a modified guanosine." [http://library.med.utah.edu/RNAmods/]	490925	\N	\N	sequence	1	SO	modified_guanosine	seven_deazaguanosine
SO:0000250	SO:0001276	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001316	"7-deazaguanosine is a modified guanosine." [http://library.med.utah.edu/RNAmods/]	1073489	\N	\N	sequence	2	SO	modified_RNA_base_feature	seven_deazaguanosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001316	"7-deazaguanosine is a modified guanosine." [http://library.med.utah.edu/RNAmods/]	1904568	\N	SOFA	sequence	3	SO	base	seven_deazaguanosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001316	"7-deazaguanosine is a modified guanosine." [http://library.med.utah.edu/RNAmods/]	2929009	SOFA	SOFA	sequence	4	SO	biological_region	seven_deazaguanosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001316	"7-deazaguanosine is a modified guanosine." [http://library.med.utah.edu/RNAmods/]	4002223	SOFA	SOFA	sequence	5	SO	region	seven_deazaguanosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001316	"7-deazaguanosine is a modified guanosine." [http://library.med.utah.edu/RNAmods/]	4966593	SOFA	SOFA	sequence	6	SO	sequence_feature	seven_deazaguanosine
SO:0001317	\N	\N	"Queuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	SO:0001317	"Queuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	46192	\N	\N	sequence	0	SO	queuosine	queuosine
SO:0001316	SO:0001317	\N	"7-deazaguanosine is a modified guanosine." [http://library.med.utah.edu/RNAmods/]	SO:0001317	"Queuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	490926	\N	\N	sequence	1	SO	seven_deazaguanosine	queuosine
SO:0001276	SO:0001316	\N	"" []	SO:0001317	"Queuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	1073490	\N	\N	sequence	2	SO	modified_guanosine	queuosine
SO:0000250	SO:0001276	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001317	"Queuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	1904569	\N	\N	sequence	3	SO	modified_RNA_base_feature	queuosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001317	"Queuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	2929010	\N	SOFA	sequence	4	SO	base	queuosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001317	"Queuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	4002224	SOFA	SOFA	sequence	5	SO	biological_region	queuosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001317	"Queuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	4966594	SOFA	SOFA	sequence	6	SO	region	queuosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001317	"Queuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	5741309	SOFA	SOFA	sequence	7	SO	sequence_feature	queuosine
SO:0001318	\N	\N	"Epoxyqueuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	SO:0001318	"Epoxyqueuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	46193	\N	\N	sequence	0	SO	epoxyqueuosine	epoxyqueuosine
SO:0001316	SO:0001318	\N	"7-deazaguanosine is a modified guanosine." [http://library.med.utah.edu/RNAmods/]	SO:0001318	"Epoxyqueuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	490927	\N	\N	sequence	1	SO	seven_deazaguanosine	epoxyqueuosine
SO:0001276	SO:0001316	\N	"" []	SO:0001318	"Epoxyqueuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	1073491	\N	\N	sequence	2	SO	modified_guanosine	epoxyqueuosine
SO:0000250	SO:0001276	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001318	"Epoxyqueuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	1904570	\N	\N	sequence	3	SO	modified_RNA_base_feature	epoxyqueuosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001318	"Epoxyqueuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	2929011	\N	SOFA	sequence	4	SO	base	epoxyqueuosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001318	"Epoxyqueuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	4002225	SOFA	SOFA	sequence	5	SO	biological_region	epoxyqueuosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001318	"Epoxyqueuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	4966595	SOFA	SOFA	sequence	6	SO	region	epoxyqueuosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001318	"Epoxyqueuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	5741310	SOFA	SOFA	sequence	7	SO	sequence_feature	epoxyqueuosine
SO:0001319	\N	\N	"Galactosyl_queuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	SO:0001319	"Galactosyl_queuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	46194	\N	\N	sequence	0	SO	galactosyl_queuosine	galactosyl_queuosine
SO:0001316	SO:0001319	\N	"7-deazaguanosine is a modified guanosine." [http://library.med.utah.edu/RNAmods/]	SO:0001319	"Galactosyl_queuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	490928	\N	\N	sequence	1	SO	seven_deazaguanosine	galactosyl_queuosine
SO:0001276	SO:0001316	\N	"" []	SO:0001319	"Galactosyl_queuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	1073492	\N	\N	sequence	2	SO	modified_guanosine	galactosyl_queuosine
SO:0000250	SO:0001276	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001319	"Galactosyl_queuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	1904571	\N	\N	sequence	3	SO	modified_RNA_base_feature	galactosyl_queuosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001319	"Galactosyl_queuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	2929012	\N	SOFA	sequence	4	SO	base	galactosyl_queuosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001319	"Galactosyl_queuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	4002226	SOFA	SOFA	sequence	5	SO	biological_region	galactosyl_queuosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001319	"Galactosyl_queuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	4966596	SOFA	SOFA	sequence	6	SO	region	galactosyl_queuosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001319	"Galactosyl_queuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	5741311	SOFA	SOFA	sequence	7	SO	sequence_feature	galactosyl_queuosine
SO:0001320	\N	\N	"Mannosyl_queuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	SO:0001320	"Mannosyl_queuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	46195	\N	\N	sequence	0	SO	mannosyl_queuosine	mannosyl_queuosine
SO:0001316	SO:0001320	\N	"7-deazaguanosine is a modified guanosine." [http://library.med.utah.edu/RNAmods/]	SO:0001320	"Mannosyl_queuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	490929	\N	\N	sequence	1	SO	seven_deazaguanosine	mannosyl_queuosine
SO:0001276	SO:0001316	\N	"" []	SO:0001320	"Mannosyl_queuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	1073493	\N	\N	sequence	2	SO	modified_guanosine	mannosyl_queuosine
SO:0000250	SO:0001276	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001320	"Mannosyl_queuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	1904572	\N	\N	sequence	3	SO	modified_RNA_base_feature	mannosyl_queuosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001320	"Mannosyl_queuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	2929013	\N	SOFA	sequence	4	SO	base	mannosyl_queuosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001320	"Mannosyl_queuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	4002227	SOFA	SOFA	sequence	5	SO	biological_region	mannosyl_queuosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001320	"Mannosyl_queuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	4966597	SOFA	SOFA	sequence	6	SO	region	mannosyl_queuosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001320	"Mannosyl_queuosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	5741312	SOFA	SOFA	sequence	7	SO	sequence_feature	mannosyl_queuosine
SO:0001321	\N	\N	"7_cyano_7_deazaguanosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	SO:0001321	"7_cyano_7_deazaguanosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	46196	\N	\N	sequence	0	SO	seven_cyano_seven_deazaguanosine	seven_cyano_seven_deazaguanosine
SO:0001316	SO:0001321	\N	"7-deazaguanosine is a modified guanosine." [http://library.med.utah.edu/RNAmods/]	SO:0001321	"7_cyano_7_deazaguanosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	490930	\N	\N	sequence	1	SO	seven_deazaguanosine	seven_cyano_seven_deazaguanosine
SO:0001276	SO:0001316	\N	"" []	SO:0001321	"7_cyano_7_deazaguanosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	1073494	\N	\N	sequence	2	SO	modified_guanosine	seven_cyano_seven_deazaguanosine
SO:0000250	SO:0001276	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001321	"7_cyano_7_deazaguanosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	1904573	\N	\N	sequence	3	SO	modified_RNA_base_feature	seven_cyano_seven_deazaguanosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001321	"7_cyano_7_deazaguanosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	2929014	\N	SOFA	sequence	4	SO	base	seven_cyano_seven_deazaguanosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001321	"7_cyano_7_deazaguanosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	4002228	SOFA	SOFA	sequence	5	SO	biological_region	seven_cyano_seven_deazaguanosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001321	"7_cyano_7_deazaguanosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	4966598	SOFA	SOFA	sequence	6	SO	region	seven_cyano_seven_deazaguanosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001321	"7_cyano_7_deazaguanosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	5741313	SOFA	SOFA	sequence	7	SO	sequence_feature	seven_cyano_seven_deazaguanosine
SO:0001322	\N	\N	"7_aminomethyl_7_deazaguanosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	SO:0001322	"7_aminomethyl_7_deazaguanosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	46197	\N	\N	sequence	0	SO	seven_aminomethyl_seven_deazaguanosine	seven_aminomethyl_seven_deazaguanosine
SO:0001316	SO:0001322	\N	"7-deazaguanosine is a modified guanosine." [http://library.med.utah.edu/RNAmods/]	SO:0001322	"7_aminomethyl_7_deazaguanosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	490931	\N	\N	sequence	1	SO	seven_deazaguanosine	seven_aminomethyl_seven_deazaguanosine
SO:0001276	SO:0001316	\N	"" []	SO:0001322	"7_aminomethyl_7_deazaguanosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	1073495	\N	\N	sequence	2	SO	modified_guanosine	seven_aminomethyl_seven_deazaguanosine
SO:0000250	SO:0001276	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001322	"7_aminomethyl_7_deazaguanosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	1904574	\N	\N	sequence	3	SO	modified_RNA_base_feature	seven_aminomethyl_seven_deazaguanosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001322	"7_aminomethyl_7_deazaguanosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	2929015	\N	SOFA	sequence	4	SO	base	seven_aminomethyl_seven_deazaguanosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001322	"7_aminomethyl_7_deazaguanosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	4002229	SOFA	SOFA	sequence	5	SO	biological_region	seven_aminomethyl_seven_deazaguanosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001322	"7_aminomethyl_7_deazaguanosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	4966599	SOFA	SOFA	sequence	6	SO	region	seven_aminomethyl_seven_deazaguanosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001322	"7_aminomethyl_7_deazaguanosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	5741314	SOFA	SOFA	sequence	7	SO	sequence_feature	seven_aminomethyl_seven_deazaguanosine
SO:0001323	\N	\N	"Archaeosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	SO:0001323	"Archaeosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	46198	\N	\N	sequence	0	SO	archaeosine	archaeosine
SO:0001316	SO:0001323	\N	"7-deazaguanosine is a modified guanosine." [http://library.med.utah.edu/RNAmods/]	SO:0001323	"Archaeosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	490932	\N	\N	sequence	1	SO	seven_deazaguanosine	archaeosine
SO:0001276	SO:0001316	\N	"" []	SO:0001323	"Archaeosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	1073496	\N	\N	sequence	2	SO	modified_guanosine	archaeosine
SO:0000250	SO:0001276	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001323	"Archaeosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	1904575	\N	\N	sequence	3	SO	modified_RNA_base_feature	archaeosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001323	"Archaeosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	2929016	\N	SOFA	sequence	4	SO	base	archaeosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001323	"Archaeosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	4002230	SOFA	SOFA	sequence	5	SO	biological_region	archaeosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001323	"Archaeosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	4966600	SOFA	SOFA	sequence	6	SO	region	archaeosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001323	"Archaeosine is a modified 7-deazoguanosine." [http://library.med.utah.edu/RNAmods/]	5741315	SOFA	SOFA	sequence	7	SO	sequence_feature	archaeosine
SO:0001324	\N	\N	"1_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001324	"1_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	46199	\N	\N	sequence	0	SO	one_methylguanosine	one_methylguanosine
SO:0001276	SO:0001324	\N	"" []	SO:0001324	"1_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	490933	\N	\N	sequence	1	SO	modified_guanosine	one_methylguanosine
SO:0000250	SO:0001276	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001324	"1_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1073497	\N	\N	sequence	2	SO	modified_RNA_base_feature	one_methylguanosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001324	"1_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1904576	\N	SOFA	sequence	3	SO	base	one_methylguanosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001324	"1_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	2929017	SOFA	SOFA	sequence	4	SO	biological_region	one_methylguanosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001324	"1_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4002231	SOFA	SOFA	sequence	5	SO	region	one_methylguanosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001324	"1_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4966601	SOFA	SOFA	sequence	6	SO	sequence_feature	one_methylguanosine
SO:0001325	\N	\N	"N2_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001325	"N2_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	46200	\N	\N	sequence	0	SO	N2_methylguanosine	N2_methylguanosine
SO:0001276	SO:0001325	\N	"" []	SO:0001325	"N2_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	490934	\N	\N	sequence	1	SO	modified_guanosine	N2_methylguanosine
SO:0000250	SO:0001276	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001325	"N2_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1073498	\N	\N	sequence	2	SO	modified_RNA_base_feature	N2_methylguanosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001325	"N2_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1904577	\N	SOFA	sequence	3	SO	base	N2_methylguanosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001325	"N2_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	2929018	SOFA	SOFA	sequence	4	SO	biological_region	N2_methylguanosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001325	"N2_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4002232	SOFA	SOFA	sequence	5	SO	region	N2_methylguanosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001325	"N2_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4966602	SOFA	SOFA	sequence	6	SO	sequence_feature	N2_methylguanosine
SO:0001326	\N	\N	"7_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001326	"7_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	46201	\N	\N	sequence	0	SO	seven_methylguanosine	seven_methylguanosine
SO:0001276	SO:0001326	\N	"" []	SO:0001326	"7_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	490935	\N	\N	sequence	1	SO	modified_guanosine	seven_methylguanosine
SO:0000250	SO:0001276	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001326	"7_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1073499	\N	\N	sequence	2	SO	modified_RNA_base_feature	seven_methylguanosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001326	"7_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1904578	\N	SOFA	sequence	3	SO	base	seven_methylguanosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001326	"7_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	2929019	SOFA	SOFA	sequence	4	SO	biological_region	seven_methylguanosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001326	"7_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4002233	SOFA	SOFA	sequence	5	SO	region	seven_methylguanosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001326	"7_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4966603	SOFA	SOFA	sequence	6	SO	sequence_feature	seven_methylguanosine
SO:0001327	\N	\N	"2prime_O_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001327	"2prime_O_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	46202	\N	\N	sequence	0	SO	two_prime_O_methylguanosine	two_prime_O_methylguanosine
SO:0001276	SO:0001327	\N	"" []	SO:0001327	"2prime_O_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	490936	\N	\N	sequence	1	SO	modified_guanosine	two_prime_O_methylguanosine
SO:0000250	SO:0001276	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001327	"2prime_O_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1073500	\N	\N	sequence	2	SO	modified_RNA_base_feature	two_prime_O_methylguanosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001327	"2prime_O_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1904579	\N	SOFA	sequence	3	SO	base	two_prime_O_methylguanosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001327	"2prime_O_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	2929020	SOFA	SOFA	sequence	4	SO	biological_region	two_prime_O_methylguanosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001327	"2prime_O_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4002234	SOFA	SOFA	sequence	5	SO	region	two_prime_O_methylguanosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001327	"2prime_O_methylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4966604	SOFA	SOFA	sequence	6	SO	sequence_feature	two_prime_O_methylguanosine
SO:0001328	\N	\N	"N2_N2_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001328	"N2_N2_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	46203	\N	\N	sequence	0	SO	N2_N2_dimethylguanosine	N2_N2_dimethylguanosine
SO:0001276	SO:0001328	\N	"" []	SO:0001328	"N2_N2_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	490937	\N	\N	sequence	1	SO	modified_guanosine	N2_N2_dimethylguanosine
SO:0000250	SO:0001276	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001328	"N2_N2_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1073501	\N	\N	sequence	2	SO	modified_RNA_base_feature	N2_N2_dimethylguanosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001328	"N2_N2_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1904580	\N	SOFA	sequence	3	SO	base	N2_N2_dimethylguanosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001328	"N2_N2_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	2929021	SOFA	SOFA	sequence	4	SO	biological_region	N2_N2_dimethylguanosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001328	"N2_N2_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4002235	SOFA	SOFA	sequence	5	SO	region	N2_N2_dimethylguanosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001328	"N2_N2_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4966605	SOFA	SOFA	sequence	6	SO	sequence_feature	N2_N2_dimethylguanosine
SO:0001329	\N	\N	"N2_2prime_O_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001329	"N2_2prime_O_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	46204	\N	\N	sequence	0	SO	N2_2_prime_O_dimethylguanosine	N2_2_prime_O_dimethylguanosine
SO:0001276	SO:0001329	\N	"" []	SO:0001329	"N2_2prime_O_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	490938	\N	\N	sequence	1	SO	modified_guanosine	N2_2_prime_O_dimethylguanosine
SO:0000250	SO:0001276	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001329	"N2_2prime_O_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1073502	\N	\N	sequence	2	SO	modified_RNA_base_feature	N2_2_prime_O_dimethylguanosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001329	"N2_2prime_O_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1904581	\N	SOFA	sequence	3	SO	base	N2_2_prime_O_dimethylguanosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001329	"N2_2prime_O_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	2929022	SOFA	SOFA	sequence	4	SO	biological_region	N2_2_prime_O_dimethylguanosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001329	"N2_2prime_O_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4002236	SOFA	SOFA	sequence	5	SO	region	N2_2_prime_O_dimethylguanosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001329	"N2_2prime_O_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4966606	SOFA	SOFA	sequence	6	SO	sequence_feature	N2_2_prime_O_dimethylguanosine
SO:0001330	\N	\N	"N2_N2_2prime_O_trimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001330	"N2_N2_2prime_O_trimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	46205	\N	\N	sequence	0	SO	N2_N2_2_prime_O_trimethylguanosine	N2_N2_2_prime_O_trimethylguanosine
SO:0001276	SO:0001330	\N	"" []	SO:0001330	"N2_N2_2prime_O_trimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	490939	\N	\N	sequence	1	SO	modified_guanosine	N2_N2_2_prime_O_trimethylguanosine
SO:0000250	SO:0001276	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001330	"N2_N2_2prime_O_trimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1073503	\N	\N	sequence	2	SO	modified_RNA_base_feature	N2_N2_2_prime_O_trimethylguanosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001330	"N2_N2_2prime_O_trimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1904582	\N	SOFA	sequence	3	SO	base	N2_N2_2_prime_O_trimethylguanosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001330	"N2_N2_2prime_O_trimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	2929023	SOFA	SOFA	sequence	4	SO	biological_region	N2_N2_2_prime_O_trimethylguanosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001330	"N2_N2_2prime_O_trimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4002237	SOFA	SOFA	sequence	5	SO	region	N2_N2_2_prime_O_trimethylguanosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001330	"N2_N2_2prime_O_trimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4966607	SOFA	SOFA	sequence	6	SO	sequence_feature	N2_N2_2_prime_O_trimethylguanosine
SO:0001331	\N	\N	"2prime_O_ribosylguanosine_phosphate is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001331	"2prime_O_ribosylguanosine_phosphate is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	46206	\N	\N	sequence	0	SO	two_prime_O_ribosylguanosine_phosphate	two_prime_O_ribosylguanosine_phosphate
SO:0001276	SO:0001331	\N	"" []	SO:0001331	"2prime_O_ribosylguanosine_phosphate is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	490940	\N	\N	sequence	1	SO	modified_guanosine	two_prime_O_ribosylguanosine_phosphate
SO:0000250	SO:0001276	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001331	"2prime_O_ribosylguanosine_phosphate is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1073504	\N	\N	sequence	2	SO	modified_RNA_base_feature	two_prime_O_ribosylguanosine_phosphate
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001331	"2prime_O_ribosylguanosine_phosphate is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1904583	\N	SOFA	sequence	3	SO	base	two_prime_O_ribosylguanosine_phosphate
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001331	"2prime_O_ribosylguanosine_phosphate is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	2929024	SOFA	SOFA	sequence	4	SO	biological_region	two_prime_O_ribosylguanosine_phosphate
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001331	"2prime_O_ribosylguanosine_phosphate is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4002238	SOFA	SOFA	sequence	5	SO	region	two_prime_O_ribosylguanosine_phosphate
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001331	"2prime_O_ribosylguanosine_phosphate is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4966608	SOFA	SOFA	sequence	6	SO	sequence_feature	two_prime_O_ribosylguanosine_phosphate
SO:0001332	\N	\N	"Wybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001332	"Wybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	46207	\N	\N	sequence	0	SO	wybutosine	wybutosine
SO:0001276	SO:0001332	\N	"" []	SO:0001332	"Wybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	490941	\N	\N	sequence	1	SO	modified_guanosine	wybutosine
SO:0000250	SO:0001276	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001332	"Wybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1073505	\N	\N	sequence	2	SO	modified_RNA_base_feature	wybutosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001332	"Wybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1904584	\N	SOFA	sequence	3	SO	base	wybutosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001332	"Wybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	2929025	SOFA	SOFA	sequence	4	SO	biological_region	wybutosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001332	"Wybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4002239	SOFA	SOFA	sequence	5	SO	region	wybutosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001332	"Wybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4966609	SOFA	SOFA	sequence	6	SO	sequence_feature	wybutosine
SO:0001333	\N	\N	"Peroxywybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001333	"Peroxywybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	46208	\N	\N	sequence	0	SO	peroxywybutosine	peroxywybutosine
SO:0001276	SO:0001333	\N	"" []	SO:0001333	"Peroxywybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	490942	\N	\N	sequence	1	SO	modified_guanosine	peroxywybutosine
SO:0000250	SO:0001276	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001333	"Peroxywybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1073506	\N	\N	sequence	2	SO	modified_RNA_base_feature	peroxywybutosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001333	"Peroxywybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1904585	\N	SOFA	sequence	3	SO	base	peroxywybutosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001333	"Peroxywybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	2929026	SOFA	SOFA	sequence	4	SO	biological_region	peroxywybutosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001333	"Peroxywybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4002240	SOFA	SOFA	sequence	5	SO	region	peroxywybutosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001333	"Peroxywybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4966610	SOFA	SOFA	sequence	6	SO	sequence_feature	peroxywybutosine
SO:0001334	\N	\N	"Hydroxywybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001334	"Hydroxywybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	46209	\N	\N	sequence	0	SO	hydroxywybutosine	hydroxywybutosine
SO:0001276	SO:0001334	\N	"" []	SO:0001334	"Hydroxywybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	490943	\N	\N	sequence	1	SO	modified_guanosine	hydroxywybutosine
SO:0000250	SO:0001276	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001334	"Hydroxywybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1073507	\N	\N	sequence	2	SO	modified_RNA_base_feature	hydroxywybutosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001334	"Hydroxywybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1904586	\N	SOFA	sequence	3	SO	base	hydroxywybutosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001334	"Hydroxywybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	2929027	SOFA	SOFA	sequence	4	SO	biological_region	hydroxywybutosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001334	"Hydroxywybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4002241	SOFA	SOFA	sequence	5	SO	region	hydroxywybutosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001334	"Hydroxywybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4966611	SOFA	SOFA	sequence	6	SO	sequence_feature	hydroxywybutosine
SO:0001335	\N	\N	"Undermodified_hydroxywybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001335	"Undermodified_hydroxywybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	46210	\N	\N	sequence	0	SO	undermodified_hydroxywybutosine	undermodified_hydroxywybutosine
SO:0001276	SO:0001335	\N	"" []	SO:0001335	"Undermodified_hydroxywybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	490944	\N	\N	sequence	1	SO	modified_guanosine	undermodified_hydroxywybutosine
SO:0000250	SO:0001276	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001335	"Undermodified_hydroxywybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1073508	\N	\N	sequence	2	SO	modified_RNA_base_feature	undermodified_hydroxywybutosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001335	"Undermodified_hydroxywybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1904587	\N	SOFA	sequence	3	SO	base	undermodified_hydroxywybutosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001335	"Undermodified_hydroxywybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	2929028	SOFA	SOFA	sequence	4	SO	biological_region	undermodified_hydroxywybutosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001335	"Undermodified_hydroxywybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4002242	SOFA	SOFA	sequence	5	SO	region	undermodified_hydroxywybutosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001335	"Undermodified_hydroxywybutosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4966612	SOFA	SOFA	sequence	6	SO	sequence_feature	undermodified_hydroxywybutosine
SO:0001336	\N	\N	"Wyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001336	"Wyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	46211	\N	\N	sequence	0	SO	wyosine	wyosine
SO:0001276	SO:0001336	\N	"" []	SO:0001336	"Wyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	490945	\N	\N	sequence	1	SO	modified_guanosine	wyosine
SO:0000250	SO:0001276	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001336	"Wyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1073509	\N	\N	sequence	2	SO	modified_RNA_base_feature	wyosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001336	"Wyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1904588	\N	SOFA	sequence	3	SO	base	wyosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001336	"Wyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	2929029	SOFA	SOFA	sequence	4	SO	biological_region	wyosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001336	"Wyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4002243	SOFA	SOFA	sequence	5	SO	region	wyosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001336	"Wyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4966613	SOFA	SOFA	sequence	6	SO	sequence_feature	wyosine
SO:0001337	\N	\N	"Methylwyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001337	"Methylwyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	46212	\N	\N	sequence	0	SO	methylwyosine	methylwyosine
SO:0001276	SO:0001337	\N	"" []	SO:0001337	"Methylwyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	490946	\N	\N	sequence	1	SO	modified_guanosine	methylwyosine
SO:0000250	SO:0001276	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001337	"Methylwyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1073510	\N	\N	sequence	2	SO	modified_RNA_base_feature	methylwyosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001337	"Methylwyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1904589	\N	SOFA	sequence	3	SO	base	methylwyosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001337	"Methylwyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	2929030	SOFA	SOFA	sequence	4	SO	biological_region	methylwyosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001337	"Methylwyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4002244	SOFA	SOFA	sequence	5	SO	region	methylwyosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001337	"Methylwyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4966614	SOFA	SOFA	sequence	6	SO	sequence_feature	methylwyosine
SO:0001338	\N	\N	"N2_7_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001338	"N2_7_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	46213	\N	\N	sequence	0	SO	N2_7_dimethylguanosine	N2_7_dimethylguanosine
SO:0001276	SO:0001338	\N	"" []	SO:0001338	"N2_7_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	490947	\N	\N	sequence	1	SO	modified_guanosine	N2_7_dimethylguanosine
SO:0000250	SO:0001276	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001338	"N2_7_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1073511	\N	\N	sequence	2	SO	modified_RNA_base_feature	N2_7_dimethylguanosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001338	"N2_7_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1904590	\N	SOFA	sequence	3	SO	base	N2_7_dimethylguanosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001338	"N2_7_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	2929031	SOFA	SOFA	sequence	4	SO	biological_region	N2_7_dimethylguanosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001338	"N2_7_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4002245	SOFA	SOFA	sequence	5	SO	region	N2_7_dimethylguanosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001338	"N2_7_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4966615	SOFA	SOFA	sequence	6	SO	sequence_feature	N2_7_dimethylguanosine
SO:0001339	\N	\N	"N2_N2_7_trimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001339	"N2_N2_7_trimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	46214	\N	\N	sequence	0	SO	N2_N2_7_trimethylguanosine	N2_N2_7_trimethylguanosine
SO:0001276	SO:0001339	\N	"" []	SO:0001339	"N2_N2_7_trimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	490948	\N	\N	sequence	1	SO	modified_guanosine	N2_N2_7_trimethylguanosine
SO:0000250	SO:0001276	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001339	"N2_N2_7_trimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1073512	\N	\N	sequence	2	SO	modified_RNA_base_feature	N2_N2_7_trimethylguanosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001339	"N2_N2_7_trimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1904591	\N	SOFA	sequence	3	SO	base	N2_N2_7_trimethylguanosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001339	"N2_N2_7_trimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	2929032	SOFA	SOFA	sequence	4	SO	biological_region	N2_N2_7_trimethylguanosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001339	"N2_N2_7_trimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4002246	SOFA	SOFA	sequence	5	SO	region	N2_N2_7_trimethylguanosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001339	"N2_N2_7_trimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4966616	SOFA	SOFA	sequence	6	SO	sequence_feature	N2_N2_7_trimethylguanosine
SO:0001340	\N	\N	"1_2prime_O_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001340	"1_2prime_O_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	46215	\N	\N	sequence	0	SO	one_two_prime_O_dimethylguanosine	one_two_prime_O_dimethylguanosine
SO:0001276	SO:0001340	\N	"" []	SO:0001340	"1_2prime_O_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	490949	\N	\N	sequence	1	SO	modified_guanosine	one_two_prime_O_dimethylguanosine
SO:0000250	SO:0001276	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001340	"1_2prime_O_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1073513	\N	\N	sequence	2	SO	modified_RNA_base_feature	one_two_prime_O_dimethylguanosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001340	"1_2prime_O_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1904592	\N	SOFA	sequence	3	SO	base	one_two_prime_O_dimethylguanosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001340	"1_2prime_O_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	2929033	SOFA	SOFA	sequence	4	SO	biological_region	one_two_prime_O_dimethylguanosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001340	"1_2prime_O_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4002247	SOFA	SOFA	sequence	5	SO	region	one_two_prime_O_dimethylguanosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001340	"1_2prime_O_dimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4966617	SOFA	SOFA	sequence	6	SO	sequence_feature	one_two_prime_O_dimethylguanosine
SO:0001341	\N	\N	"4_demethylwyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001341	"4_demethylwyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	46216	\N	\N	sequence	0	SO	four_demethylwyosine	four_demethylwyosine
SO:0001276	SO:0001341	\N	"" []	SO:0001341	"4_demethylwyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	490950	\N	\N	sequence	1	SO	modified_guanosine	four_demethylwyosine
SO:0000250	SO:0001276	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001341	"4_demethylwyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1073514	\N	\N	sequence	2	SO	modified_RNA_base_feature	four_demethylwyosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001341	"4_demethylwyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1904593	\N	SOFA	sequence	3	SO	base	four_demethylwyosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001341	"4_demethylwyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	2929034	SOFA	SOFA	sequence	4	SO	biological_region	four_demethylwyosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001341	"4_demethylwyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4002248	SOFA	SOFA	sequence	5	SO	region	four_demethylwyosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001341	"4_demethylwyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4966618	SOFA	SOFA	sequence	6	SO	sequence_feature	four_demethylwyosine
SO:0001342	\N	\N	"Isowyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001342	"Isowyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	46217	\N	\N	sequence	0	SO	isowyosine	isowyosine
SO:0001276	SO:0001342	\N	"" []	SO:0001342	"Isowyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	490951	\N	\N	sequence	1	SO	modified_guanosine	isowyosine
SO:0000250	SO:0001276	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001342	"Isowyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1073515	\N	\N	sequence	2	SO	modified_RNA_base_feature	isowyosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001342	"Isowyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1904594	\N	SOFA	sequence	3	SO	base	isowyosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001342	"Isowyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	2929035	SOFA	SOFA	sequence	4	SO	biological_region	isowyosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001342	"Isowyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4002249	SOFA	SOFA	sequence	5	SO	region	isowyosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001342	"Isowyosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4966619	SOFA	SOFA	sequence	6	SO	sequence_feature	isowyosine
SO:0001343	\N	\N	"N2_7_2prirme_O_trimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001343	"N2_7_2prirme_O_trimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	46218	\N	\N	sequence	0	SO	N2_7_2prirme_O_trimethylguanosine	N2_7_2prirme_O_trimethylguanosine
SO:0001276	SO:0001343	\N	"" []	SO:0001343	"N2_7_2prirme_O_trimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	490952	\N	\N	sequence	1	SO	modified_guanosine	N2_7_2prirme_O_trimethylguanosine
SO:0000250	SO:0001276	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001343	"N2_7_2prirme_O_trimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1073516	\N	\N	sequence	2	SO	modified_RNA_base_feature	N2_7_2prirme_O_trimethylguanosine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001343	"N2_7_2prirme_O_trimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	1904595	\N	SOFA	sequence	3	SO	base	N2_7_2prirme_O_trimethylguanosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001343	"N2_7_2prirme_O_trimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	2929036	SOFA	SOFA	sequence	4	SO	biological_region	N2_7_2prirme_O_trimethylguanosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001343	"N2_7_2prirme_O_trimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4002250	SOFA	SOFA	sequence	5	SO	region	N2_7_2prirme_O_trimethylguanosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001343	"N2_7_2prirme_O_trimethylguanosine is a modified guanosine base feature." [http://library.med.utah.edu/RNAmods/]	4966620	SOFA	SOFA	sequence	6	SO	sequence_feature	N2_7_2prirme_O_trimethylguanosine
SO:0001344	\N	\N	"5_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001344	"5_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46219	\N	\N	sequence	0	SO	five_methyluridine	five_methyluridine
SO:0001277	SO:0001344	\N	"" []	SO:0001344	"5_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490953	\N	\N	sequence	1	SO	modified_uridine	five_methyluridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001344	"5_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073517	\N	\N	sequence	2	SO	modified_RNA_base_feature	five_methyluridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001344	"5_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904596	\N	SOFA	sequence	3	SO	base	five_methyluridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001344	"5_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929037	SOFA	SOFA	sequence	4	SO	biological_region	five_methyluridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001344	"5_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002251	SOFA	SOFA	sequence	5	SO	region	five_methyluridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001344	"5_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966621	SOFA	SOFA	sequence	6	SO	sequence_feature	five_methyluridine
SO:0001345	\N	\N	"2prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001345	"2prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46220	\N	\N	sequence	0	SO	two_prime_O_methyluridine	two_prime_O_methyluridine
SO:0001277	SO:0001345	\N	"" []	SO:0001345	"2prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490954	\N	\N	sequence	1	SO	modified_uridine	two_prime_O_methyluridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001345	"2prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073518	\N	\N	sequence	2	SO	modified_RNA_base_feature	two_prime_O_methyluridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001345	"2prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904597	\N	SOFA	sequence	3	SO	base	two_prime_O_methyluridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001345	"2prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929038	SOFA	SOFA	sequence	4	SO	biological_region	two_prime_O_methyluridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001345	"2prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002252	SOFA	SOFA	sequence	5	SO	region	two_prime_O_methyluridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001345	"2prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966622	SOFA	SOFA	sequence	6	SO	sequence_feature	two_prime_O_methyluridine
SO:0001346	\N	\N	"5_2_prime_O_dimethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001346	"5_2_prime_O_dimethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46221	\N	\N	sequence	0	SO	five_two_prime_O_dimethyluridine	five_two_prime_O_dimethyluridine
SO:0001277	SO:0001346	\N	"" []	SO:0001346	"5_2_prime_O_dimethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490955	\N	\N	sequence	1	SO	modified_uridine	five_two_prime_O_dimethyluridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001346	"5_2_prime_O_dimethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073519	\N	\N	sequence	2	SO	modified_RNA_base_feature	five_two_prime_O_dimethyluridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001346	"5_2_prime_O_dimethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904598	\N	SOFA	sequence	3	SO	base	five_two_prime_O_dimethyluridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001346	"5_2_prime_O_dimethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929039	SOFA	SOFA	sequence	4	SO	biological_region	five_two_prime_O_dimethyluridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001346	"5_2_prime_O_dimethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002253	SOFA	SOFA	sequence	5	SO	region	five_two_prime_O_dimethyluridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001346	"5_2_prime_O_dimethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966623	SOFA	SOFA	sequence	6	SO	sequence_feature	five_two_prime_O_dimethyluridine
SO:0001347	\N	\N	"1_methylpseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001347	"1_methylpseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46222	\N	\N	sequence	0	SO	one_methylpseudouridine	one_methylpseudouridine
SO:0001277	SO:0001347	\N	"" []	SO:0001347	"1_methylpseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490956	\N	\N	sequence	1	SO	modified_uridine	one_methylpseudouridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001347	"1_methylpseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073520	\N	\N	sequence	2	SO	modified_RNA_base_feature	one_methylpseudouridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001347	"1_methylpseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904599	\N	SOFA	sequence	3	SO	base	one_methylpseudouridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001347	"1_methylpseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929040	SOFA	SOFA	sequence	4	SO	biological_region	one_methylpseudouridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001347	"1_methylpseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002254	SOFA	SOFA	sequence	5	SO	region	one_methylpseudouridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001347	"1_methylpseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966624	SOFA	SOFA	sequence	6	SO	sequence_feature	one_methylpseudouridine
SO:0001348	\N	\N	"2prime_O_methylpseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001348	"2prime_O_methylpseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46223	\N	\N	sequence	0	SO	two_prime_O_methylpseudouridine	two_prime_O_methylpseudouridine
SO:0001277	SO:0001348	\N	"" []	SO:0001348	"2prime_O_methylpseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490957	\N	\N	sequence	1	SO	modified_uridine	two_prime_O_methylpseudouridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001348	"2prime_O_methylpseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073521	\N	\N	sequence	2	SO	modified_RNA_base_feature	two_prime_O_methylpseudouridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001348	"2prime_O_methylpseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904600	\N	SOFA	sequence	3	SO	base	two_prime_O_methylpseudouridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001348	"2prime_O_methylpseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929041	SOFA	SOFA	sequence	4	SO	biological_region	two_prime_O_methylpseudouridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001348	"2prime_O_methylpseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002255	SOFA	SOFA	sequence	5	SO	region	two_prime_O_methylpseudouridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001348	"2prime_O_methylpseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966625	SOFA	SOFA	sequence	6	SO	sequence_feature	two_prime_O_methylpseudouridine
SO:0001349	\N	\N	"2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001349	"2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46224	\N	\N	sequence	0	SO	two_thiouridine	two_thiouridine
SO:0001277	SO:0001349	\N	"" []	SO:0001349	"2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490958	\N	\N	sequence	1	SO	modified_uridine	two_thiouridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001349	"2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073522	\N	\N	sequence	2	SO	modified_RNA_base_feature	two_thiouridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001349	"2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904601	\N	SOFA	sequence	3	SO	base	two_thiouridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001349	"2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929042	SOFA	SOFA	sequence	4	SO	biological_region	two_thiouridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001349	"2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002256	SOFA	SOFA	sequence	5	SO	region	two_thiouridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001349	"2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966626	SOFA	SOFA	sequence	6	SO	sequence_feature	two_thiouridine
SO:0001350	\N	\N	"4_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001350	"4_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46225	\N	\N	sequence	0	SO	four_thiouridine	four_thiouridine
SO:0001277	SO:0001350	\N	"" []	SO:0001350	"4_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490959	\N	\N	sequence	1	SO	modified_uridine	four_thiouridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001350	"4_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073523	\N	\N	sequence	2	SO	modified_RNA_base_feature	four_thiouridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001350	"4_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904602	\N	SOFA	sequence	3	SO	base	four_thiouridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001350	"4_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929043	SOFA	SOFA	sequence	4	SO	biological_region	four_thiouridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001350	"4_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002257	SOFA	SOFA	sequence	5	SO	region	four_thiouridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001350	"4_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966627	SOFA	SOFA	sequence	6	SO	sequence_feature	four_thiouridine
SO:0001351	\N	\N	"5_methyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001351	"5_methyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46226	\N	\N	sequence	0	SO	five_methyl_2_thiouridine	five_methyl_2_thiouridine
SO:0001277	SO:0001351	\N	"" []	SO:0001351	"5_methyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490960	\N	\N	sequence	1	SO	modified_uridine	five_methyl_2_thiouridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001351	"5_methyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073524	\N	\N	sequence	2	SO	modified_RNA_base_feature	five_methyl_2_thiouridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001351	"5_methyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904603	\N	SOFA	sequence	3	SO	base	five_methyl_2_thiouridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001351	"5_methyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929044	SOFA	SOFA	sequence	4	SO	biological_region	five_methyl_2_thiouridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001351	"5_methyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002258	SOFA	SOFA	sequence	5	SO	region	five_methyl_2_thiouridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001351	"5_methyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966628	SOFA	SOFA	sequence	6	SO	sequence_feature	five_methyl_2_thiouridine
SO:0001352	\N	\N	"2_thio_2prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001352	"2_thio_2prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46227	\N	\N	sequence	0	SO	two_thio_two_prime_O_methyluridine	two_thio_two_prime_O_methyluridine
SO:0001277	SO:0001352	\N	"" []	SO:0001352	"2_thio_2prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490961	\N	\N	sequence	1	SO	modified_uridine	two_thio_two_prime_O_methyluridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001352	"2_thio_2prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073525	\N	\N	sequence	2	SO	modified_RNA_base_feature	two_thio_two_prime_O_methyluridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001352	"2_thio_2prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904604	\N	SOFA	sequence	3	SO	base	two_thio_two_prime_O_methyluridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001352	"2_thio_2prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929045	SOFA	SOFA	sequence	4	SO	biological_region	two_thio_two_prime_O_methyluridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001352	"2_thio_2prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002259	SOFA	SOFA	sequence	5	SO	region	two_thio_two_prime_O_methyluridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001352	"2_thio_2prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966629	SOFA	SOFA	sequence	6	SO	sequence_feature	two_thio_two_prime_O_methyluridine
SO:0001353	\N	\N	"3_3_amino_3_carboxypropyl_uridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001353	"3_3_amino_3_carboxypropyl_uridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46228	\N	\N	sequence	0	SO	three_three_amino_three_carboxypropyl_uridine	three_three_amino_three_carboxypropyl_uridine
SO:0001277	SO:0001353	\N	"" []	SO:0001353	"3_3_amino_3_carboxypropyl_uridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490962	\N	\N	sequence	1	SO	modified_uridine	three_three_amino_three_carboxypropyl_uridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001353	"3_3_amino_3_carboxypropyl_uridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073526	\N	\N	sequence	2	SO	modified_RNA_base_feature	three_three_amino_three_carboxypropyl_uridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001353	"3_3_amino_3_carboxypropyl_uridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904605	\N	SOFA	sequence	3	SO	base	three_three_amino_three_carboxypropyl_uridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001353	"3_3_amino_3_carboxypropyl_uridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929046	SOFA	SOFA	sequence	4	SO	biological_region	three_three_amino_three_carboxypropyl_uridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001353	"3_3_amino_3_carboxypropyl_uridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002260	SOFA	SOFA	sequence	5	SO	region	three_three_amino_three_carboxypropyl_uridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001353	"3_3_amino_3_carboxypropyl_uridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966630	SOFA	SOFA	sequence	6	SO	sequence_feature	three_three_amino_three_carboxypropyl_uridine
SO:0001354	\N	\N	"5_hydroxyuridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001354	"5_hydroxyuridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46229	\N	\N	sequence	0	SO	five_hydroxyuridine	five_hydroxyuridine
SO:0001277	SO:0001354	\N	"" []	SO:0001354	"5_hydroxyuridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490963	\N	\N	sequence	1	SO	modified_uridine	five_hydroxyuridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001354	"5_hydroxyuridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073527	\N	\N	sequence	2	SO	modified_RNA_base_feature	five_hydroxyuridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001354	"5_hydroxyuridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904606	\N	SOFA	sequence	3	SO	base	five_hydroxyuridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001354	"5_hydroxyuridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929047	SOFA	SOFA	sequence	4	SO	biological_region	five_hydroxyuridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001354	"5_hydroxyuridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002261	SOFA	SOFA	sequence	5	SO	region	five_hydroxyuridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001354	"5_hydroxyuridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966631	SOFA	SOFA	sequence	6	SO	sequence_feature	five_hydroxyuridine
SO:0001355	\N	\N	"5_methoxyuridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001355	"5_methoxyuridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46230	\N	\N	sequence	0	SO	five_methoxyuridine	five_methoxyuridine
SO:0001277	SO:0001355	\N	"" []	SO:0001355	"5_methoxyuridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490964	\N	\N	sequence	1	SO	modified_uridine	five_methoxyuridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001355	"5_methoxyuridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073528	\N	\N	sequence	2	SO	modified_RNA_base_feature	five_methoxyuridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001355	"5_methoxyuridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904607	\N	SOFA	sequence	3	SO	base	five_methoxyuridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001355	"5_methoxyuridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929048	SOFA	SOFA	sequence	4	SO	biological_region	five_methoxyuridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001355	"5_methoxyuridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002262	SOFA	SOFA	sequence	5	SO	region	five_methoxyuridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001355	"5_methoxyuridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966632	SOFA	SOFA	sequence	6	SO	sequence_feature	five_methoxyuridine
SO:0001356	\N	\N	"Uridine_5_oxyacetic_acid is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001356	"Uridine_5_oxyacetic_acid is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46231	\N	\N	sequence	0	SO	uridine_five_oxyacetic_acid	uridine_five_oxyacetic_acid
SO:0001277	SO:0001356	\N	"" []	SO:0001356	"Uridine_5_oxyacetic_acid is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490965	\N	\N	sequence	1	SO	modified_uridine	uridine_five_oxyacetic_acid
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001356	"Uridine_5_oxyacetic_acid is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073529	\N	\N	sequence	2	SO	modified_RNA_base_feature	uridine_five_oxyacetic_acid
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001356	"Uridine_5_oxyacetic_acid is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904608	\N	SOFA	sequence	3	SO	base	uridine_five_oxyacetic_acid
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001356	"Uridine_5_oxyacetic_acid is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929049	SOFA	SOFA	sequence	4	SO	biological_region	uridine_five_oxyacetic_acid
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001356	"Uridine_5_oxyacetic_acid is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002263	SOFA	SOFA	sequence	5	SO	region	uridine_five_oxyacetic_acid
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001356	"Uridine_5_oxyacetic_acid is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966633	SOFA	SOFA	sequence	6	SO	sequence_feature	uridine_five_oxyacetic_acid
SO:0001357	\N	\N	"Uridine_5_oxyacetic_acid_methyl_ester is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001357	"Uridine_5_oxyacetic_acid_methyl_ester is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46232	\N	\N	sequence	0	SO	uridine_five_oxyacetic_acid_methyl_ester	uridine_five_oxyacetic_acid_methyl_ester
SO:0001277	SO:0001357	\N	"" []	SO:0001357	"Uridine_5_oxyacetic_acid_methyl_ester is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490966	\N	\N	sequence	1	SO	modified_uridine	uridine_five_oxyacetic_acid_methyl_ester
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001357	"Uridine_5_oxyacetic_acid_methyl_ester is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073530	\N	\N	sequence	2	SO	modified_RNA_base_feature	uridine_five_oxyacetic_acid_methyl_ester
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001357	"Uridine_5_oxyacetic_acid_methyl_ester is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904609	\N	SOFA	sequence	3	SO	base	uridine_five_oxyacetic_acid_methyl_ester
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001357	"Uridine_5_oxyacetic_acid_methyl_ester is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929050	SOFA	SOFA	sequence	4	SO	biological_region	uridine_five_oxyacetic_acid_methyl_ester
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001357	"Uridine_5_oxyacetic_acid_methyl_ester is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002264	SOFA	SOFA	sequence	5	SO	region	uridine_five_oxyacetic_acid_methyl_ester
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001357	"Uridine_5_oxyacetic_acid_methyl_ester is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966634	SOFA	SOFA	sequence	6	SO	sequence_feature	uridine_five_oxyacetic_acid_methyl_ester
SO:0001358	\N	\N	"5_carboxyhydroxymethyl_uridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001358	"5_carboxyhydroxymethyl_uridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46233	\N	\N	sequence	0	SO	five_carboxyhydroxymethyl_uridine	five_carboxyhydroxymethyl_uridine
SO:0001277	SO:0001358	\N	"" []	SO:0001358	"5_carboxyhydroxymethyl_uridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490967	\N	\N	sequence	1	SO	modified_uridine	five_carboxyhydroxymethyl_uridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001358	"5_carboxyhydroxymethyl_uridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073531	\N	\N	sequence	2	SO	modified_RNA_base_feature	five_carboxyhydroxymethyl_uridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001358	"5_carboxyhydroxymethyl_uridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904610	\N	SOFA	sequence	3	SO	base	five_carboxyhydroxymethyl_uridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001358	"5_carboxyhydroxymethyl_uridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929051	SOFA	SOFA	sequence	4	SO	biological_region	five_carboxyhydroxymethyl_uridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001358	"5_carboxyhydroxymethyl_uridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002265	SOFA	SOFA	sequence	5	SO	region	five_carboxyhydroxymethyl_uridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001358	"5_carboxyhydroxymethyl_uridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966635	SOFA	SOFA	sequence	6	SO	sequence_feature	five_carboxyhydroxymethyl_uridine
SO:0001359	\N	\N	"5_carboxyhydroxymethyl_uridine_methyl_ester is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001359	"5_carboxyhydroxymethyl_uridine_methyl_ester is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46234	\N	\N	sequence	0	SO	five_carboxyhydroxymethyl_uridine_methyl_ester	five_carboxyhydroxymethyl_uridine_methyl_ester
SO:0001277	SO:0001359	\N	"" []	SO:0001359	"5_carboxyhydroxymethyl_uridine_methyl_ester is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490968	\N	\N	sequence	1	SO	modified_uridine	five_carboxyhydroxymethyl_uridine_methyl_ester
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001359	"5_carboxyhydroxymethyl_uridine_methyl_ester is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073532	\N	\N	sequence	2	SO	modified_RNA_base_feature	five_carboxyhydroxymethyl_uridine_methyl_ester
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001359	"5_carboxyhydroxymethyl_uridine_methyl_ester is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904611	\N	SOFA	sequence	3	SO	base	five_carboxyhydroxymethyl_uridine_methyl_ester
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001359	"5_carboxyhydroxymethyl_uridine_methyl_ester is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929052	SOFA	SOFA	sequence	4	SO	biological_region	five_carboxyhydroxymethyl_uridine_methyl_ester
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001359	"5_carboxyhydroxymethyl_uridine_methyl_ester is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002266	SOFA	SOFA	sequence	5	SO	region	five_carboxyhydroxymethyl_uridine_methyl_ester
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001359	"5_carboxyhydroxymethyl_uridine_methyl_ester is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966636	SOFA	SOFA	sequence	6	SO	sequence_feature	five_carboxyhydroxymethyl_uridine_methyl_ester
SO:0001360	\N	\N	"Five_methoxycarbonylmethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001360	"Five_methoxycarbonylmethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46235	\N	\N	sequence	0	SO	five_methoxycarbonylmethyluridine	five_methoxycarbonylmethyluridine
SO:0001277	SO:0001360	\N	"" []	SO:0001360	"Five_methoxycarbonylmethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490969	\N	\N	sequence	1	SO	modified_uridine	five_methoxycarbonylmethyluridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001360	"Five_methoxycarbonylmethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073533	\N	\N	sequence	2	SO	modified_RNA_base_feature	five_methoxycarbonylmethyluridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001360	"Five_methoxycarbonylmethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904612	\N	SOFA	sequence	3	SO	base	five_methoxycarbonylmethyluridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001360	"Five_methoxycarbonylmethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929053	SOFA	SOFA	sequence	4	SO	biological_region	five_methoxycarbonylmethyluridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001360	"Five_methoxycarbonylmethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002267	SOFA	SOFA	sequence	5	SO	region	five_methoxycarbonylmethyluridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001360	"Five_methoxycarbonylmethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966637	SOFA	SOFA	sequence	6	SO	sequence_feature	five_methoxycarbonylmethyluridine
SO:0001361	\N	\N	"Five_methoxycarbonylmethyl_2_prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001361	"Five_methoxycarbonylmethyl_2_prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46236	\N	\N	sequence	0	SO	five_methoxycarbonylmethyl_two_prime_O_methyluridine	five_methoxycarbonylmethyl_two_prime_O_methyluridine
SO:0001277	SO:0001361	\N	"" []	SO:0001361	"Five_methoxycarbonylmethyl_2_prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490970	\N	\N	sequence	1	SO	modified_uridine	five_methoxycarbonylmethyl_two_prime_O_methyluridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001361	"Five_methoxycarbonylmethyl_2_prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073534	\N	\N	sequence	2	SO	modified_RNA_base_feature	five_methoxycarbonylmethyl_two_prime_O_methyluridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001361	"Five_methoxycarbonylmethyl_2_prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904613	\N	SOFA	sequence	3	SO	base	five_methoxycarbonylmethyl_two_prime_O_methyluridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001361	"Five_methoxycarbonylmethyl_2_prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929054	SOFA	SOFA	sequence	4	SO	biological_region	five_methoxycarbonylmethyl_two_prime_O_methyluridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001361	"Five_methoxycarbonylmethyl_2_prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002268	SOFA	SOFA	sequence	5	SO	region	five_methoxycarbonylmethyl_two_prime_O_methyluridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001361	"Five_methoxycarbonylmethyl_2_prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966638	SOFA	SOFA	sequence	6	SO	sequence_feature	five_methoxycarbonylmethyl_two_prime_O_methyluridine
SO:0001362	\N	\N	"5_methoxycarbonylmethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001362	"5_methoxycarbonylmethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46237	\N	\N	sequence	0	SO	five_methoxycarbonylmethyl_two_thiouridine	five_methoxycarbonylmethyl_two_thiouridine
SO:0001277	SO:0001362	\N	"" []	SO:0001362	"5_methoxycarbonylmethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490971	\N	\N	sequence	1	SO	modified_uridine	five_methoxycarbonylmethyl_two_thiouridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001362	"5_methoxycarbonylmethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073535	\N	\N	sequence	2	SO	modified_RNA_base_feature	five_methoxycarbonylmethyl_two_thiouridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001362	"5_methoxycarbonylmethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904614	\N	SOFA	sequence	3	SO	base	five_methoxycarbonylmethyl_two_thiouridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001362	"5_methoxycarbonylmethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929055	SOFA	SOFA	sequence	4	SO	biological_region	five_methoxycarbonylmethyl_two_thiouridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001362	"5_methoxycarbonylmethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002269	SOFA	SOFA	sequence	5	SO	region	five_methoxycarbonylmethyl_two_thiouridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001362	"5_methoxycarbonylmethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966639	SOFA	SOFA	sequence	6	SO	sequence_feature	five_methoxycarbonylmethyl_two_thiouridine
SO:0001363	\N	\N	"5_aminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001363	"5_aminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46238	\N	\N	sequence	0	SO	five_aminomethyl_two_thiouridine	five_aminomethyl_two_thiouridine
SO:0001277	SO:0001363	\N	"" []	SO:0001363	"5_aminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490972	\N	\N	sequence	1	SO	modified_uridine	five_aminomethyl_two_thiouridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001363	"5_aminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073536	\N	\N	sequence	2	SO	modified_RNA_base_feature	five_aminomethyl_two_thiouridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001363	"5_aminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904615	\N	SOFA	sequence	3	SO	base	five_aminomethyl_two_thiouridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001363	"5_aminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929056	SOFA	SOFA	sequence	4	SO	biological_region	five_aminomethyl_two_thiouridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001363	"5_aminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002270	SOFA	SOFA	sequence	5	SO	region	five_aminomethyl_two_thiouridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001363	"5_aminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966640	SOFA	SOFA	sequence	6	SO	sequence_feature	five_aminomethyl_two_thiouridine
SO:0001364	\N	\N	"5_methylaminomethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001364	"5_methylaminomethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46239	\N	\N	sequence	0	SO	five_methylaminomethyluridine	five_methylaminomethyluridine
SO:0001277	SO:0001364	\N	"" []	SO:0001364	"5_methylaminomethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490973	\N	\N	sequence	1	SO	modified_uridine	five_methylaminomethyluridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001364	"5_methylaminomethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073537	\N	\N	sequence	2	SO	modified_RNA_base_feature	five_methylaminomethyluridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001364	"5_methylaminomethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904616	\N	SOFA	sequence	3	SO	base	five_methylaminomethyluridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001364	"5_methylaminomethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929057	SOFA	SOFA	sequence	4	SO	biological_region	five_methylaminomethyluridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001364	"5_methylaminomethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002271	SOFA	SOFA	sequence	5	SO	region	five_methylaminomethyluridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001364	"5_methylaminomethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966641	SOFA	SOFA	sequence	6	SO	sequence_feature	five_methylaminomethyluridine
SO:0001365	\N	\N	"5_methylaminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001365	"5_methylaminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46240	\N	\N	sequence	0	SO	five_methylaminomethyl_two_thiouridine	five_methylaminomethyl_two_thiouridine
SO:0001277	SO:0001365	\N	"" []	SO:0001365	"5_methylaminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490974	\N	\N	sequence	1	SO	modified_uridine	five_methylaminomethyl_two_thiouridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001365	"5_methylaminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073538	\N	\N	sequence	2	SO	modified_RNA_base_feature	five_methylaminomethyl_two_thiouridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001365	"5_methylaminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904617	\N	SOFA	sequence	3	SO	base	five_methylaminomethyl_two_thiouridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001365	"5_methylaminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929058	SOFA	SOFA	sequence	4	SO	biological_region	five_methylaminomethyl_two_thiouridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001365	"5_methylaminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002272	SOFA	SOFA	sequence	5	SO	region	five_methylaminomethyl_two_thiouridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001365	"5_methylaminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966642	SOFA	SOFA	sequence	6	SO	sequence_feature	five_methylaminomethyl_two_thiouridine
SO:0001366	\N	\N	"5_methylaminomethyl_2_selenouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001366	"5_methylaminomethyl_2_selenouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46241	\N	\N	sequence	0	SO	five_methylaminomethyl_two_selenouridine	five_methylaminomethyl_two_selenouridine
SO:0001277	SO:0001366	\N	"" []	SO:0001366	"5_methylaminomethyl_2_selenouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490975	\N	\N	sequence	1	SO	modified_uridine	five_methylaminomethyl_two_selenouridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001366	"5_methylaminomethyl_2_selenouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073539	\N	\N	sequence	2	SO	modified_RNA_base_feature	five_methylaminomethyl_two_selenouridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001366	"5_methylaminomethyl_2_selenouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904618	\N	SOFA	sequence	3	SO	base	five_methylaminomethyl_two_selenouridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001366	"5_methylaminomethyl_2_selenouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929059	SOFA	SOFA	sequence	4	SO	biological_region	five_methylaminomethyl_two_selenouridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001366	"5_methylaminomethyl_2_selenouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002273	SOFA	SOFA	sequence	5	SO	region	five_methylaminomethyl_two_selenouridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001366	"5_methylaminomethyl_2_selenouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966643	SOFA	SOFA	sequence	6	SO	sequence_feature	five_methylaminomethyl_two_selenouridine
SO:0001367	\N	\N	"5_carbamoylmethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001367	"5_carbamoylmethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46242	\N	\N	sequence	0	SO	five_carbamoylmethyluridine	five_carbamoylmethyluridine
SO:0001277	SO:0001367	\N	"" []	SO:0001367	"5_carbamoylmethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490976	\N	\N	sequence	1	SO	modified_uridine	five_carbamoylmethyluridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001367	"5_carbamoylmethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073540	\N	\N	sequence	2	SO	modified_RNA_base_feature	five_carbamoylmethyluridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001367	"5_carbamoylmethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904619	\N	SOFA	sequence	3	SO	base	five_carbamoylmethyluridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001367	"5_carbamoylmethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929060	SOFA	SOFA	sequence	4	SO	biological_region	five_carbamoylmethyluridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001367	"5_carbamoylmethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002274	SOFA	SOFA	sequence	5	SO	region	five_carbamoylmethyluridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001367	"5_carbamoylmethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966644	SOFA	SOFA	sequence	6	SO	sequence_feature	five_carbamoylmethyluridine
SO:0001368	\N	\N	"5_carbamoylmethyl_2_prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001368	"5_carbamoylmethyl_2_prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46243	\N	\N	sequence	0	SO	five_carbamoylmethyl_two_prime_O_methyluridine	five_carbamoylmethyl_two_prime_O_methyluridine
SO:0001277	SO:0001368	\N	"" []	SO:0001368	"5_carbamoylmethyl_2_prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490977	\N	\N	sequence	1	SO	modified_uridine	five_carbamoylmethyl_two_prime_O_methyluridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001368	"5_carbamoylmethyl_2_prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073541	\N	\N	sequence	2	SO	modified_RNA_base_feature	five_carbamoylmethyl_two_prime_O_methyluridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001368	"5_carbamoylmethyl_2_prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904620	\N	SOFA	sequence	3	SO	base	five_carbamoylmethyl_two_prime_O_methyluridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001368	"5_carbamoylmethyl_2_prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929061	SOFA	SOFA	sequence	4	SO	biological_region	five_carbamoylmethyl_two_prime_O_methyluridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001368	"5_carbamoylmethyl_2_prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002275	SOFA	SOFA	sequence	5	SO	region	five_carbamoylmethyl_two_prime_O_methyluridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001368	"5_carbamoylmethyl_2_prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966645	SOFA	SOFA	sequence	6	SO	sequence_feature	five_carbamoylmethyl_two_prime_O_methyluridine
SO:0001369	\N	\N	"5_carboxymethylaminomethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001369	"5_carboxymethylaminomethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46244	\N	\N	sequence	0	SO	five_carboxymethylaminomethyluridine	five_carboxymethylaminomethyluridine
SO:0001277	SO:0001369	\N	"" []	SO:0001369	"5_carboxymethylaminomethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490978	\N	\N	sequence	1	SO	modified_uridine	five_carboxymethylaminomethyluridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001369	"5_carboxymethylaminomethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073542	\N	\N	sequence	2	SO	modified_RNA_base_feature	five_carboxymethylaminomethyluridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001369	"5_carboxymethylaminomethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904621	\N	SOFA	sequence	3	SO	base	five_carboxymethylaminomethyluridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001369	"5_carboxymethylaminomethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929062	SOFA	SOFA	sequence	4	SO	biological_region	five_carboxymethylaminomethyluridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001369	"5_carboxymethylaminomethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002276	SOFA	SOFA	sequence	5	SO	region	five_carboxymethylaminomethyluridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001369	"5_carboxymethylaminomethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966646	SOFA	SOFA	sequence	6	SO	sequence_feature	five_carboxymethylaminomethyluridine
SO:0001370	\N	\N	"5_carboxymethylaminomethyl_2_prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001370	"5_carboxymethylaminomethyl_2_prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46245	\N	\N	sequence	0	SO	five_carboxymethylaminomethyl_two_prime_O_methyluridine	five_carboxymethylaminomethyl_two_prime_O_methyluridine
SO:0001277	SO:0001370	\N	"" []	SO:0001370	"5_carboxymethylaminomethyl_2_prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490979	\N	\N	sequence	1	SO	modified_uridine	five_carboxymethylaminomethyl_two_prime_O_methyluridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001370	"5_carboxymethylaminomethyl_2_prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073543	\N	\N	sequence	2	SO	modified_RNA_base_feature	five_carboxymethylaminomethyl_two_prime_O_methyluridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001370	"5_carboxymethylaminomethyl_2_prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904622	\N	SOFA	sequence	3	SO	base	five_carboxymethylaminomethyl_two_prime_O_methyluridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001370	"5_carboxymethylaminomethyl_2_prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929063	SOFA	SOFA	sequence	4	SO	biological_region	five_carboxymethylaminomethyl_two_prime_O_methyluridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001370	"5_carboxymethylaminomethyl_2_prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002277	SOFA	SOFA	sequence	5	SO	region	five_carboxymethylaminomethyl_two_prime_O_methyluridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001370	"5_carboxymethylaminomethyl_2_prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966647	SOFA	SOFA	sequence	6	SO	sequence_feature	five_carboxymethylaminomethyl_two_prime_O_methyluridine
SO:0001371	\N	\N	"5_carboxymethylaminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001371	"5_carboxymethylaminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46246	\N	\N	sequence	0	SO	five_carboxymethylaminomethyl_two_thiouridine	five_carboxymethylaminomethyl_two_thiouridine
SO:0001277	SO:0001371	\N	"" []	SO:0001371	"5_carboxymethylaminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490980	\N	\N	sequence	1	SO	modified_uridine	five_carboxymethylaminomethyl_two_thiouridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001371	"5_carboxymethylaminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073544	\N	\N	sequence	2	SO	modified_RNA_base_feature	five_carboxymethylaminomethyl_two_thiouridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001371	"5_carboxymethylaminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904623	\N	SOFA	sequence	3	SO	base	five_carboxymethylaminomethyl_two_thiouridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001371	"5_carboxymethylaminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929064	SOFA	SOFA	sequence	4	SO	biological_region	five_carboxymethylaminomethyl_two_thiouridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001371	"5_carboxymethylaminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002278	SOFA	SOFA	sequence	5	SO	region	five_carboxymethylaminomethyl_two_thiouridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001371	"5_carboxymethylaminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966648	SOFA	SOFA	sequence	6	SO	sequence_feature	five_carboxymethylaminomethyl_two_thiouridine
SO:0001372	\N	\N	"3_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001372	"3_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46247	\N	\N	sequence	0	SO	three_methyluridine	three_methyluridine
SO:0001277	SO:0001372	\N	"" []	SO:0001372	"3_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490981	\N	\N	sequence	1	SO	modified_uridine	three_methyluridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001372	"3_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073545	\N	\N	sequence	2	SO	modified_RNA_base_feature	three_methyluridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001372	"3_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904624	\N	SOFA	sequence	3	SO	base	three_methyluridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001372	"3_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929065	SOFA	SOFA	sequence	4	SO	biological_region	three_methyluridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001372	"3_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002279	SOFA	SOFA	sequence	5	SO	region	three_methyluridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001372	"3_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966649	SOFA	SOFA	sequence	6	SO	sequence_feature	three_methyluridine
SO:0001373	\N	\N	"1_methyl_3_3_amino_3_carboxypropyl_pseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001373	"1_methyl_3_3_amino_3_carboxypropyl_pseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46248	\N	\N	sequence	0	SO	one_methyl_three_three_amino_three_carboxypropyl_pseudouridine	one_methyl_three_three_amino_three_carboxypropyl_pseudouridine
SO:0001277	SO:0001373	\N	"" []	SO:0001373	"1_methyl_3_3_amino_3_carboxypropyl_pseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490982	\N	\N	sequence	1	SO	modified_uridine	one_methyl_three_three_amino_three_carboxypropyl_pseudouridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001373	"1_methyl_3_3_amino_3_carboxypropyl_pseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073546	\N	\N	sequence	2	SO	modified_RNA_base_feature	one_methyl_three_three_amino_three_carboxypropyl_pseudouridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001373	"1_methyl_3_3_amino_3_carboxypropyl_pseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904625	\N	SOFA	sequence	3	SO	base	one_methyl_three_three_amino_three_carboxypropyl_pseudouridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001373	"1_methyl_3_3_amino_3_carboxypropyl_pseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929066	SOFA	SOFA	sequence	4	SO	biological_region	one_methyl_three_three_amino_three_carboxypropyl_pseudouridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001373	"1_methyl_3_3_amino_3_carboxypropyl_pseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002280	SOFA	SOFA	sequence	5	SO	region	one_methyl_three_three_amino_three_carboxypropyl_pseudouridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001373	"1_methyl_3_3_amino_3_carboxypropyl_pseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966650	SOFA	SOFA	sequence	6	SO	sequence_feature	one_methyl_three_three_amino_three_carboxypropyl_pseudouridine
SO:0001374	\N	\N	"5_carboxymethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001374	"5_carboxymethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46249	\N	\N	sequence	0	SO	five_carboxymethyluridine	five_carboxymethyluridine
SO:0001277	SO:0001374	\N	"" []	SO:0001374	"5_carboxymethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490983	\N	\N	sequence	1	SO	modified_uridine	five_carboxymethyluridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001374	"5_carboxymethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073547	\N	\N	sequence	2	SO	modified_RNA_base_feature	five_carboxymethyluridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001374	"5_carboxymethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904626	\N	SOFA	sequence	3	SO	base	five_carboxymethyluridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001374	"5_carboxymethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929067	SOFA	SOFA	sequence	4	SO	biological_region	five_carboxymethyluridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001374	"5_carboxymethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002281	SOFA	SOFA	sequence	5	SO	region	five_carboxymethyluridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001374	"5_carboxymethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966651	SOFA	SOFA	sequence	6	SO	sequence_feature	five_carboxymethyluridine
SO:0001375	\N	\N	"3_2prime_O_dimethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001375	"3_2prime_O_dimethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46250	\N	\N	sequence	0	SO	three_two_prime_O_dimethyluridine	three_two_prime_O_dimethyluridine
SO:0001277	SO:0001375	\N	"" []	SO:0001375	"3_2prime_O_dimethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490984	\N	\N	sequence	1	SO	modified_uridine	three_two_prime_O_dimethyluridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001375	"3_2prime_O_dimethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073548	\N	\N	sequence	2	SO	modified_RNA_base_feature	three_two_prime_O_dimethyluridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001375	"3_2prime_O_dimethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904627	\N	SOFA	sequence	3	SO	base	three_two_prime_O_dimethyluridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001375	"3_2prime_O_dimethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929068	SOFA	SOFA	sequence	4	SO	biological_region	three_two_prime_O_dimethyluridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001375	"3_2prime_O_dimethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002282	SOFA	SOFA	sequence	5	SO	region	three_two_prime_O_dimethyluridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001375	"3_2prime_O_dimethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966652	SOFA	SOFA	sequence	6	SO	sequence_feature	three_two_prime_O_dimethyluridine
SO:0001376	\N	\N	"5_methyldihydrouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001376	"5_methyldihydrouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46251	\N	\N	sequence	0	SO	five_methyldihydrouridine	five_methyldihydrouridine
SO:0001277	SO:0001376	\N	"" []	SO:0001376	"5_methyldihydrouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490985	\N	\N	sequence	1	SO	modified_uridine	five_methyldihydrouridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001376	"5_methyldihydrouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073549	\N	\N	sequence	2	SO	modified_RNA_base_feature	five_methyldihydrouridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001376	"5_methyldihydrouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904628	\N	SOFA	sequence	3	SO	base	five_methyldihydrouridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001376	"5_methyldihydrouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929069	SOFA	SOFA	sequence	4	SO	biological_region	five_methyldihydrouridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001376	"5_methyldihydrouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002283	SOFA	SOFA	sequence	5	SO	region	five_methyldihydrouridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001376	"5_methyldihydrouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966653	SOFA	SOFA	sequence	6	SO	sequence_feature	five_methyldihydrouridine
SO:0001377	\N	\N	"3_methylpseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001377	"3_methylpseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46252	\N	\N	sequence	0	SO	three_methylpseudouridine	three_methylpseudouridine
SO:0001277	SO:0001377	\N	"" []	SO:0001377	"3_methylpseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490986	\N	\N	sequence	1	SO	modified_uridine	three_methylpseudouridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001377	"3_methylpseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073550	\N	\N	sequence	2	SO	modified_RNA_base_feature	three_methylpseudouridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001377	"3_methylpseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904629	\N	SOFA	sequence	3	SO	base	three_methylpseudouridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001377	"3_methylpseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929070	SOFA	SOFA	sequence	4	SO	biological_region	three_methylpseudouridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001377	"3_methylpseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002284	SOFA	SOFA	sequence	5	SO	region	three_methylpseudouridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001377	"3_methylpseudouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966654	SOFA	SOFA	sequence	6	SO	sequence_feature	three_methylpseudouridine
SO:0001378	\N	\N	"5_taurinomethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001378	"5_taurinomethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46253	\N	\N	sequence	0	SO	five_taurinomethyluridine	five_taurinomethyluridine
SO:0001277	SO:0001378	\N	"" []	SO:0001378	"5_taurinomethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490987	\N	\N	sequence	1	SO	modified_uridine	five_taurinomethyluridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001378	"5_taurinomethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073551	\N	\N	sequence	2	SO	modified_RNA_base_feature	five_taurinomethyluridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001378	"5_taurinomethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904630	\N	SOFA	sequence	3	SO	base	five_taurinomethyluridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001378	"5_taurinomethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929071	SOFA	SOFA	sequence	4	SO	biological_region	five_taurinomethyluridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001378	"5_taurinomethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002285	SOFA	SOFA	sequence	5	SO	region	five_taurinomethyluridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001378	"5_taurinomethyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966655	SOFA	SOFA	sequence	6	SO	sequence_feature	five_taurinomethyluridine
SO:0001379	\N	\N	"5_taurinomethyl_2_thiouridineis a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001379	"5_taurinomethyl_2_thiouridineis a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46254	\N	\N	sequence	0	SO	five_taurinomethyl_two_thiouridine	five_taurinomethyl_two_thiouridine
SO:0001277	SO:0001379	\N	"" []	SO:0001379	"5_taurinomethyl_2_thiouridineis a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490988	\N	\N	sequence	1	SO	modified_uridine	five_taurinomethyl_two_thiouridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001379	"5_taurinomethyl_2_thiouridineis a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073552	\N	\N	sequence	2	SO	modified_RNA_base_feature	five_taurinomethyl_two_thiouridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001379	"5_taurinomethyl_2_thiouridineis a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904631	\N	SOFA	sequence	3	SO	base	five_taurinomethyl_two_thiouridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001379	"5_taurinomethyl_2_thiouridineis a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929072	SOFA	SOFA	sequence	4	SO	biological_region	five_taurinomethyl_two_thiouridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001379	"5_taurinomethyl_2_thiouridineis a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002286	SOFA	SOFA	sequence	5	SO	region	five_taurinomethyl_two_thiouridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001379	"5_taurinomethyl_2_thiouridineis a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966656	SOFA	SOFA	sequence	6	SO	sequence_feature	five_taurinomethyl_two_thiouridine
SO:0001380	\N	\N	"5_isopentenylaminomethyl_uridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001380	"5_isopentenylaminomethyl_uridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46255	\N	\N	sequence	0	SO	five_isopentenylaminomethyl_uridine	five_isopentenylaminomethyl_uridine
SO:0001277	SO:0001380	\N	"" []	SO:0001380	"5_isopentenylaminomethyl_uridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490989	\N	\N	sequence	1	SO	modified_uridine	five_isopentenylaminomethyl_uridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001380	"5_isopentenylaminomethyl_uridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073553	\N	\N	sequence	2	SO	modified_RNA_base_feature	five_isopentenylaminomethyl_uridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001380	"5_isopentenylaminomethyl_uridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904632	\N	SOFA	sequence	3	SO	base	five_isopentenylaminomethyl_uridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001380	"5_isopentenylaminomethyl_uridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929073	SOFA	SOFA	sequence	4	SO	biological_region	five_isopentenylaminomethyl_uridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001380	"5_isopentenylaminomethyl_uridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002287	SOFA	SOFA	sequence	5	SO	region	five_isopentenylaminomethyl_uridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001380	"5_isopentenylaminomethyl_uridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966657	SOFA	SOFA	sequence	6	SO	sequence_feature	five_isopentenylaminomethyl_uridine
SO:0001381	\N	\N	"5_isopentenylaminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001381	"5_isopentenylaminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46256	\N	\N	sequence	0	SO	five_isopentenylaminomethyl_two_thiouridine	five_isopentenylaminomethyl_two_thiouridine
SO:0001277	SO:0001381	\N	"" []	SO:0001381	"5_isopentenylaminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490990	\N	\N	sequence	1	SO	modified_uridine	five_isopentenylaminomethyl_two_thiouridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001381	"5_isopentenylaminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073554	\N	\N	sequence	2	SO	modified_RNA_base_feature	five_isopentenylaminomethyl_two_thiouridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001381	"5_isopentenylaminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904633	\N	SOFA	sequence	3	SO	base	five_isopentenylaminomethyl_two_thiouridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001381	"5_isopentenylaminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929074	SOFA	SOFA	sequence	4	SO	biological_region	five_isopentenylaminomethyl_two_thiouridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001381	"5_isopentenylaminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002288	SOFA	SOFA	sequence	5	SO	region	five_isopentenylaminomethyl_two_thiouridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001381	"5_isopentenylaminomethyl_2_thiouridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966658	SOFA	SOFA	sequence	6	SO	sequence_feature	five_isopentenylaminomethyl_two_thiouridine
SO:0001382	\N	\N	"5_isopentenylaminomethyl_2prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	SO:0001382	"5_isopentenylaminomethyl_2prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	46257	\N	\N	sequence	0	SO	five_isopentenylaminomethyl_two_prime_O_methyluridine	five_isopentenylaminomethyl_two_prime_O_methyluridine
SO:0001277	SO:0001382	\N	"" []	SO:0001382	"5_isopentenylaminomethyl_2prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	490991	\N	\N	sequence	1	SO	modified_uridine	five_isopentenylaminomethyl_two_prime_O_methyluridine
SO:0000250	SO:0001277	\N	"A post_transcriptionally modified base." [SO:ke]	SO:0001382	"5_isopentenylaminomethyl_2prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1073555	\N	\N	sequence	2	SO	modified_RNA_base_feature	five_isopentenylaminomethyl_two_prime_O_methyluridine
SO:0001236	SO:0000250	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001382	"5_isopentenylaminomethyl_2prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	1904634	\N	SOFA	sequence	3	SO	base	five_isopentenylaminomethyl_two_prime_O_methyluridine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001382	"5_isopentenylaminomethyl_2prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	2929075	SOFA	SOFA	sequence	4	SO	biological_region	five_isopentenylaminomethyl_two_prime_O_methyluridine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001382	"5_isopentenylaminomethyl_2prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4002289	SOFA	SOFA	sequence	5	SO	region	five_isopentenylaminomethyl_two_prime_O_methyluridine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001382	"5_isopentenylaminomethyl_2prime_O_methyluridine is a modified uridine base feature." [http://library.med.utah.edu/RNAmods/]	4966659	SOFA	SOFA	sequence	6	SO	sequence_feature	five_isopentenylaminomethyl_two_prime_O_methyluridine
SO:0001383	\N	\N	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues of a histone." [SO:ke]	SO:0001383	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues of a histone." [SO:ke]	46258	\N	\N	sequence	0	SO	histone_binding_site	histone_binding_site
SO:0001654	SO:0001383	\N	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	SO:0001383	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues of a histone." [SO:ke]	490992	\N	SOFA	sequence	1	SO	nucleotide_to_protein_binding_site	histone_binding_site
SO:0000410	SO:0001654	\N	"A binding site that, in the molecule, interacts selectively and non-covalently with polypeptide molecules." [SO:ke]	SO:0001383	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues of a histone." [SO:ke]	1073556	SOFA	SOFA	sequence	2	SO	protein_binding_site	histone_binding_site
SO:0000409	SO:0000410	\N	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0001383	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues of a histone." [SO:ke]	1904635	SOFA	biosapiens,SOFA	sequence	3	SO	binding_site	histone_binding_site
SO:0001411	SO:0000409	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001383	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues of a histone." [SO:ke]	2929076	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	histone_binding_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001383	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues of a histone." [SO:ke]	4002290	SOFA	SOFA	sequence	5	SO	region	histone_binding_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001383	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues of a histone." [SO:ke]	4966660	SOFA	SOFA	sequence	6	SO	sequence_feature	histone_binding_site
SO:0001384	\N	\N	"" []	SO:0001384	"" []	46259	\N	\N	sequence	0	SO	CDS_fragment	CDS_fragment
SO:0000316	SO:0001384	\N	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	SO:0001384	"" []	490993	\N	SOFA	sequence	1	SO	CDS	CDS_fragment
SO:0000836	SO:0000316	\N	"A region of an mRNA." [SO:cb]	SO:0001384	"" []	1073557	SOFA	SOFA	sequence	2	SO	mRNA_region	CDS_fragment
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0001384	"" []	1904636	SOFA	SOFA	sequence	3	SO	mRNA	CDS_fragment
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:0001384	"" []	1904637	SOFA	SOFA	sequence	3	SO	mature_transcript_region	CDS_fragment
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001384	"" []	2929077	SOFA	SOFA	sequence	4	SO	mature_transcript	CDS_fragment
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0001384	"" []	2929078	SOFA	SOFA	sequence	4	SO	transcript_region	CDS_fragment
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001384	"" []	4002291	SOFA	SOFA	sequence	5	SO	transcript	CDS_fragment
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001384	"" []	4002292	SOFA	SOFA	sequence	5	SO	transcript	CDS_fragment
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001384	"" []	4002293	SOFA	SOFA	sequence	5	SO	biological_region	CDS_fragment
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001384	"" []	4966661	SOFA	SOFA	sequence	6	SO	gene_member_region	CDS_fragment
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001384	"" []	6311109	SOFA	SOFA	sequence	8	SO	region	CDS_fragment
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001384	"" []	5741316	SOFA	SOFA	sequence	7	SO	biological_region	CDS_fragment
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001384	"" []	6550280	SOFA	SOFA	sequence	9	SO	sequence_feature	CDS_fragment
SO:0001385	\N	\N	"A post translationally modified amino acid feature." [SO:ke]	SO:0001385	"A post translationally modified amino acid feature." [SO:ke]	46260	\N	\N	sequence	0	SO	modified_amino_acid_feature	modified_amino_acid_feature
SO:0001237	SO:0001385	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001385	"A post translationally modified amino acid feature." [SO:ke]	490994	\N	\N	sequence	1	SO	amino_acid	modified_amino_acid_feature
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001385	"A post translationally modified amino acid feature." [SO:ke]	1073558	\N	SOFA	sequence	2	SO	polypeptide	modified_amino_acid_feature
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001385	"A post translationally modified amino acid feature." [SO:ke]	1073559	\N	SOFA	sequence	2	SO	biological_region	modified_amino_acid_feature
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001385	"A post translationally modified amino acid feature." [SO:ke]	1904638	SOFA	SOFA	sequence	3	SO	biological_region	modified_amino_acid_feature
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001385	"A post translationally modified amino acid feature." [SO:ke]	2929079	SOFA	SOFA	sequence	4	SO	region	modified_amino_acid_feature
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001385	"A post translationally modified amino acid feature." [SO:ke]	3173969	SOFA	SOFA	sequence	5	SO	sequence_feature	modified_amino_acid_feature
SO:0001386	\N	\N	"A post translationally modified glycine amino acid feature." [SO:ke]	SO:0001386	"A post translationally modified glycine amino acid feature." [SO:ke]	46261	\N	\N	sequence	0	SO	modified_glycine	modified_glycine
SO:0001385	SO:0001386	\N	"A post translationally modified amino acid feature." [SO:ke]	SO:0001386	"A post translationally modified glycine amino acid feature." [SO:ke]	490995	\N	\N	sequence	1	SO	modified_amino_acid_feature	modified_glycine
SO:0001237	SO:0001385	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001386	"A post translationally modified glycine amino acid feature." [SO:ke]	1073560	\N	\N	sequence	2	SO	amino_acid	modified_glycine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001386	"A post translationally modified glycine amino acid feature." [SO:ke]	1904640	\N	SOFA	sequence	3	SO	polypeptide	modified_glycine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001386	"A post translationally modified glycine amino acid feature." [SO:ke]	1904641	\N	SOFA	sequence	3	SO	biological_region	modified_glycine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001386	"A post translationally modified glycine amino acid feature." [SO:ke]	2929081	SOFA	SOFA	sequence	4	SO	biological_region	modified_glycine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001386	"A post translationally modified glycine amino acid feature." [SO:ke]	4002294	SOFA	SOFA	sequence	5	SO	region	modified_glycine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001386	"A post translationally modified glycine amino acid feature." [SO:ke]	4385819	SOFA	SOFA	sequence	6	SO	sequence_feature	modified_glycine
SO:0001387	\N	\N	"A post translationally modified alanine amino acid feature." [SO:ke]	SO:0001387	"A post translationally modified alanine amino acid feature." [SO:ke]	46262	\N	\N	sequence	0	SO	modified_L_alanine	modified_L_alanine
SO:0001385	SO:0001387	\N	"A post translationally modified amino acid feature." [SO:ke]	SO:0001387	"A post translationally modified alanine amino acid feature." [SO:ke]	490996	\N	\N	sequence	1	SO	modified_amino_acid_feature	modified_L_alanine
SO:0001237	SO:0001385	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001387	"A post translationally modified alanine amino acid feature." [SO:ke]	1073561	\N	\N	sequence	2	SO	amino_acid	modified_L_alanine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001387	"A post translationally modified alanine amino acid feature." [SO:ke]	1904642	\N	SOFA	sequence	3	SO	polypeptide	modified_L_alanine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001387	"A post translationally modified alanine amino acid feature." [SO:ke]	1904643	\N	SOFA	sequence	3	SO	biological_region	modified_L_alanine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001387	"A post translationally modified alanine amino acid feature." [SO:ke]	2929083	SOFA	SOFA	sequence	4	SO	biological_region	modified_L_alanine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001387	"A post translationally modified alanine amino acid feature." [SO:ke]	4002296	SOFA	SOFA	sequence	5	SO	region	modified_L_alanine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001387	"A post translationally modified alanine amino acid feature." [SO:ke]	4385820	SOFA	SOFA	sequence	6	SO	sequence_feature	modified_L_alanine
SO:0001388	\N	\N	"A post translationally modified asparagine amino acid feature." [SO:ke]	SO:0001388	"A post translationally modified asparagine amino acid feature." [SO:ke]	46263	\N	\N	sequence	0	SO	modified_L_asparagine	modified_L_asparagine
SO:0001385	SO:0001388	\N	"A post translationally modified amino acid feature." [SO:ke]	SO:0001388	"A post translationally modified asparagine amino acid feature." [SO:ke]	490997	\N	\N	sequence	1	SO	modified_amino_acid_feature	modified_L_asparagine
SO:0001237	SO:0001385	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001388	"A post translationally modified asparagine amino acid feature." [SO:ke]	1073562	\N	\N	sequence	2	SO	amino_acid	modified_L_asparagine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001388	"A post translationally modified asparagine amino acid feature." [SO:ke]	1904644	\N	SOFA	sequence	3	SO	polypeptide	modified_L_asparagine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001388	"A post translationally modified asparagine amino acid feature." [SO:ke]	1904645	\N	SOFA	sequence	3	SO	biological_region	modified_L_asparagine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001388	"A post translationally modified asparagine amino acid feature." [SO:ke]	2929085	SOFA	SOFA	sequence	4	SO	biological_region	modified_L_asparagine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001388	"A post translationally modified asparagine amino acid feature." [SO:ke]	4002298	SOFA	SOFA	sequence	5	SO	region	modified_L_asparagine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001388	"A post translationally modified asparagine amino acid feature." [SO:ke]	4385821	SOFA	SOFA	sequence	6	SO	sequence_feature	modified_L_asparagine
SO:0001389	\N	\N	"A post translationally modified aspartic acid amino acid feature." [SO:ke]	SO:0001389	"A post translationally modified aspartic acid amino acid feature." [SO:ke]	46264	\N	\N	sequence	0	SO	modified_L_aspartic_acid	modified_L_aspartic_acid
SO:0001385	SO:0001389	\N	"A post translationally modified amino acid feature." [SO:ke]	SO:0001389	"A post translationally modified aspartic acid amino acid feature." [SO:ke]	490998	\N	\N	sequence	1	SO	modified_amino_acid_feature	modified_L_aspartic_acid
SO:0001237	SO:0001385	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001389	"A post translationally modified aspartic acid amino acid feature." [SO:ke]	1073563	\N	\N	sequence	2	SO	amino_acid	modified_L_aspartic_acid
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001389	"A post translationally modified aspartic acid amino acid feature." [SO:ke]	1904646	\N	SOFA	sequence	3	SO	polypeptide	modified_L_aspartic_acid
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001389	"A post translationally modified aspartic acid amino acid feature." [SO:ke]	1904647	\N	SOFA	sequence	3	SO	biological_region	modified_L_aspartic_acid
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001389	"A post translationally modified aspartic acid amino acid feature." [SO:ke]	2929087	SOFA	SOFA	sequence	4	SO	biological_region	modified_L_aspartic_acid
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001389	"A post translationally modified aspartic acid amino acid feature." [SO:ke]	4002300	SOFA	SOFA	sequence	5	SO	region	modified_L_aspartic_acid
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001389	"A post translationally modified aspartic acid amino acid feature." [SO:ke]	4385822	SOFA	SOFA	sequence	6	SO	sequence_feature	modified_L_aspartic_acid
SO:0001390	\N	\N	"A post translationally modified cysteine amino acid feature." [SO:ke]	SO:0001390	"A post translationally modified cysteine amino acid feature." [SO:ke]	46265	\N	\N	sequence	0	SO	modified_L_cysteine	modified_L_cysteine
SO:0001385	SO:0001390	\N	"A post translationally modified amino acid feature." [SO:ke]	SO:0001390	"A post translationally modified cysteine amino acid feature." [SO:ke]	490999	\N	\N	sequence	1	SO	modified_amino_acid_feature	modified_L_cysteine
SO:0001237	SO:0001385	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001390	"A post translationally modified cysteine amino acid feature." [SO:ke]	1073564	\N	\N	sequence	2	SO	amino_acid	modified_L_cysteine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001390	"A post translationally modified cysteine amino acid feature." [SO:ke]	1904648	\N	SOFA	sequence	3	SO	polypeptide	modified_L_cysteine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001390	"A post translationally modified cysteine amino acid feature." [SO:ke]	1904649	\N	SOFA	sequence	3	SO	biological_region	modified_L_cysteine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001390	"A post translationally modified cysteine amino acid feature." [SO:ke]	2929089	SOFA	SOFA	sequence	4	SO	biological_region	modified_L_cysteine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001390	"A post translationally modified cysteine amino acid feature." [SO:ke]	4002302	SOFA	SOFA	sequence	5	SO	region	modified_L_cysteine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001390	"A post translationally modified cysteine amino acid feature." [SO:ke]	4385823	SOFA	SOFA	sequence	6	SO	sequence_feature	modified_L_cysteine
SO:0001391	\N	\N	"" []	SO:0001391	"" []	46266	\N	\N	sequence	0	SO	modified_L_glutamic_acid	modified_L_glutamic_acid
SO:0001385	SO:0001391	\N	"A post translationally modified amino acid feature." [SO:ke]	SO:0001391	"" []	491000	\N	\N	sequence	1	SO	modified_amino_acid_feature	modified_L_glutamic_acid
SO:0001237	SO:0001385	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001391	"" []	1073565	\N	\N	sequence	2	SO	amino_acid	modified_L_glutamic_acid
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001391	"" []	1904650	\N	SOFA	sequence	3	SO	polypeptide	modified_L_glutamic_acid
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001391	"" []	1904651	\N	SOFA	sequence	3	SO	biological_region	modified_L_glutamic_acid
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001391	"" []	2929091	SOFA	SOFA	sequence	4	SO	biological_region	modified_L_glutamic_acid
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001391	"" []	4002304	SOFA	SOFA	sequence	5	SO	region	modified_L_glutamic_acid
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001391	"" []	4385824	SOFA	SOFA	sequence	6	SO	sequence_feature	modified_L_glutamic_acid
SO:0001392	\N	\N	"A post translationally modified threonine amino acid feature." [SO:ke]	SO:0001392	"A post translationally modified threonine amino acid feature." [SO:ke]	46267	\N	\N	sequence	0	SO	modified_L_threonine	modified_L_threonine
SO:0001385	SO:0001392	\N	"A post translationally modified amino acid feature." [SO:ke]	SO:0001392	"A post translationally modified threonine amino acid feature." [SO:ke]	491001	\N	\N	sequence	1	SO	modified_amino_acid_feature	modified_L_threonine
SO:0001237	SO:0001385	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001392	"A post translationally modified threonine amino acid feature." [SO:ke]	1073566	\N	\N	sequence	2	SO	amino_acid	modified_L_threonine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001392	"A post translationally modified threonine amino acid feature." [SO:ke]	1904652	\N	SOFA	sequence	3	SO	polypeptide	modified_L_threonine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001392	"A post translationally modified threonine amino acid feature." [SO:ke]	1904653	\N	SOFA	sequence	3	SO	biological_region	modified_L_threonine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001392	"A post translationally modified threonine amino acid feature." [SO:ke]	2929093	SOFA	SOFA	sequence	4	SO	biological_region	modified_L_threonine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001392	"A post translationally modified threonine amino acid feature." [SO:ke]	4002306	SOFA	SOFA	sequence	5	SO	region	modified_L_threonine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001392	"A post translationally modified threonine amino acid feature." [SO:ke]	4385825	SOFA	SOFA	sequence	6	SO	sequence_feature	modified_L_threonine
SO:0001393	\N	\N	"A post translationally modified tryptophan amino acid feature." [SO:ke]	SO:0001393	"A post translationally modified tryptophan amino acid feature." [SO:ke]	46268	\N	\N	sequence	0	SO	modified_L_tryptophan	modified_L_tryptophan
SO:0001385	SO:0001393	\N	"A post translationally modified amino acid feature." [SO:ke]	SO:0001393	"A post translationally modified tryptophan amino acid feature." [SO:ke]	491002	\N	\N	sequence	1	SO	modified_amino_acid_feature	modified_L_tryptophan
SO:0001237	SO:0001385	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001393	"A post translationally modified tryptophan amino acid feature." [SO:ke]	1073567	\N	\N	sequence	2	SO	amino_acid	modified_L_tryptophan
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001393	"A post translationally modified tryptophan amino acid feature." [SO:ke]	1904654	\N	SOFA	sequence	3	SO	polypeptide	modified_L_tryptophan
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001393	"A post translationally modified tryptophan amino acid feature." [SO:ke]	1904655	\N	SOFA	sequence	3	SO	biological_region	modified_L_tryptophan
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001393	"A post translationally modified tryptophan amino acid feature." [SO:ke]	2929095	SOFA	SOFA	sequence	4	SO	biological_region	modified_L_tryptophan
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001393	"A post translationally modified tryptophan amino acid feature." [SO:ke]	4002308	SOFA	SOFA	sequence	5	SO	region	modified_L_tryptophan
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001393	"A post translationally modified tryptophan amino acid feature." [SO:ke]	4385826	SOFA	SOFA	sequence	6	SO	sequence_feature	modified_L_tryptophan
SO:0001394	\N	\N	"A post translationally modified glutamine amino acid feature." [SO:ke]	SO:0001394	"A post translationally modified glutamine amino acid feature." [SO:ke]	46269	\N	\N	sequence	0	SO	modified_L_glutamine	modified_L_glutamine
SO:0001385	SO:0001394	\N	"A post translationally modified amino acid feature." [SO:ke]	SO:0001394	"A post translationally modified glutamine amino acid feature." [SO:ke]	491003	\N	\N	sequence	1	SO	modified_amino_acid_feature	modified_L_glutamine
SO:0001237	SO:0001385	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001394	"A post translationally modified glutamine amino acid feature." [SO:ke]	1073568	\N	\N	sequence	2	SO	amino_acid	modified_L_glutamine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001394	"A post translationally modified glutamine amino acid feature." [SO:ke]	1904656	\N	SOFA	sequence	3	SO	polypeptide	modified_L_glutamine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001394	"A post translationally modified glutamine amino acid feature." [SO:ke]	1904657	\N	SOFA	sequence	3	SO	biological_region	modified_L_glutamine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001394	"A post translationally modified glutamine amino acid feature." [SO:ke]	2929097	SOFA	SOFA	sequence	4	SO	biological_region	modified_L_glutamine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001394	"A post translationally modified glutamine amino acid feature." [SO:ke]	4002310	SOFA	SOFA	sequence	5	SO	region	modified_L_glutamine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001394	"A post translationally modified glutamine amino acid feature." [SO:ke]	4385827	SOFA	SOFA	sequence	6	SO	sequence_feature	modified_L_glutamine
SO:0001395	\N	\N	"A post translationally modified methionine amino acid feature." [SO:ke]	SO:0001395	"A post translationally modified methionine amino acid feature." [SO:ke]	46270	\N	\N	sequence	0	SO	modified_L_methionine	modified_L_methionine
SO:0001385	SO:0001395	\N	"A post translationally modified amino acid feature." [SO:ke]	SO:0001395	"A post translationally modified methionine amino acid feature." [SO:ke]	491004	\N	\N	sequence	1	SO	modified_amino_acid_feature	modified_L_methionine
SO:0001237	SO:0001385	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001395	"A post translationally modified methionine amino acid feature." [SO:ke]	1073569	\N	\N	sequence	2	SO	amino_acid	modified_L_methionine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001395	"A post translationally modified methionine amino acid feature." [SO:ke]	1904658	\N	SOFA	sequence	3	SO	polypeptide	modified_L_methionine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001395	"A post translationally modified methionine amino acid feature." [SO:ke]	1904659	\N	SOFA	sequence	3	SO	biological_region	modified_L_methionine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001395	"A post translationally modified methionine amino acid feature." [SO:ke]	2929099	SOFA	SOFA	sequence	4	SO	biological_region	modified_L_methionine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001395	"A post translationally modified methionine amino acid feature." [SO:ke]	4002312	SOFA	SOFA	sequence	5	SO	region	modified_L_methionine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001395	"A post translationally modified methionine amino acid feature." [SO:ke]	4385828	SOFA	SOFA	sequence	6	SO	sequence_feature	modified_L_methionine
SO:0001396	\N	\N	"A post translationally modified isoleucine amino acid feature." [SO:ke]	SO:0001396	"A post translationally modified isoleucine amino acid feature." [SO:ke]	46271	\N	\N	sequence	0	SO	modified_L_isoleucine	modified_L_isoleucine
SO:0001385	SO:0001396	\N	"A post translationally modified amino acid feature." [SO:ke]	SO:0001396	"A post translationally modified isoleucine amino acid feature." [SO:ke]	491005	\N	\N	sequence	1	SO	modified_amino_acid_feature	modified_L_isoleucine
SO:0001237	SO:0001385	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001396	"A post translationally modified isoleucine amino acid feature." [SO:ke]	1073570	\N	\N	sequence	2	SO	amino_acid	modified_L_isoleucine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001396	"A post translationally modified isoleucine amino acid feature." [SO:ke]	1904660	\N	SOFA	sequence	3	SO	polypeptide	modified_L_isoleucine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001396	"A post translationally modified isoleucine amino acid feature." [SO:ke]	1904661	\N	SOFA	sequence	3	SO	biological_region	modified_L_isoleucine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001396	"A post translationally modified isoleucine amino acid feature." [SO:ke]	2929101	SOFA	SOFA	sequence	4	SO	biological_region	modified_L_isoleucine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001396	"A post translationally modified isoleucine amino acid feature." [SO:ke]	4002314	SOFA	SOFA	sequence	5	SO	region	modified_L_isoleucine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001396	"A post translationally modified isoleucine amino acid feature." [SO:ke]	4385829	SOFA	SOFA	sequence	6	SO	sequence_feature	modified_L_isoleucine
SO:0001397	\N	\N	"A post translationally modified phenylalanine amino acid feature." [SO:ke]	SO:0001397	"A post translationally modified phenylalanine amino acid feature." [SO:ke]	46272	\N	\N	sequence	0	SO	modified_L_phenylalanine	modified_L_phenylalanine
SO:0001385	SO:0001397	\N	"A post translationally modified amino acid feature." [SO:ke]	SO:0001397	"A post translationally modified phenylalanine amino acid feature." [SO:ke]	491006	\N	\N	sequence	1	SO	modified_amino_acid_feature	modified_L_phenylalanine
SO:0001237	SO:0001385	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001397	"A post translationally modified phenylalanine amino acid feature." [SO:ke]	1073571	\N	\N	sequence	2	SO	amino_acid	modified_L_phenylalanine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001397	"A post translationally modified phenylalanine amino acid feature." [SO:ke]	1904662	\N	SOFA	sequence	3	SO	polypeptide	modified_L_phenylalanine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001397	"A post translationally modified phenylalanine amino acid feature." [SO:ke]	1904663	\N	SOFA	sequence	3	SO	biological_region	modified_L_phenylalanine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001397	"A post translationally modified phenylalanine amino acid feature." [SO:ke]	2929103	SOFA	SOFA	sequence	4	SO	biological_region	modified_L_phenylalanine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001397	"A post translationally modified phenylalanine amino acid feature." [SO:ke]	4002316	SOFA	SOFA	sequence	5	SO	region	modified_L_phenylalanine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001397	"A post translationally modified phenylalanine amino acid feature." [SO:ke]	4385830	SOFA	SOFA	sequence	6	SO	sequence_feature	modified_L_phenylalanine
SO:0001398	\N	\N	"A post translationally modified histidine amino acid feature." [SO:ke]	SO:0001398	"A post translationally modified histidine amino acid feature." [SO:ke]	46273	\N	\N	sequence	0	SO	modified_L_histidine	modified_L_histidine
SO:0001385	SO:0001398	\N	"A post translationally modified amino acid feature." [SO:ke]	SO:0001398	"A post translationally modified histidine amino acid feature." [SO:ke]	491007	\N	\N	sequence	1	SO	modified_amino_acid_feature	modified_L_histidine
SO:0001237	SO:0001385	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001398	"A post translationally modified histidine amino acid feature." [SO:ke]	1073572	\N	\N	sequence	2	SO	amino_acid	modified_L_histidine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001398	"A post translationally modified histidine amino acid feature." [SO:ke]	1904664	\N	SOFA	sequence	3	SO	polypeptide	modified_L_histidine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001398	"A post translationally modified histidine amino acid feature." [SO:ke]	1904665	\N	SOFA	sequence	3	SO	biological_region	modified_L_histidine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001398	"A post translationally modified histidine amino acid feature." [SO:ke]	2929105	SOFA	SOFA	sequence	4	SO	biological_region	modified_L_histidine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001398	"A post translationally modified histidine amino acid feature." [SO:ke]	4002318	SOFA	SOFA	sequence	5	SO	region	modified_L_histidine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001398	"A post translationally modified histidine amino acid feature." [SO:ke]	4385831	SOFA	SOFA	sequence	6	SO	sequence_feature	modified_L_histidine
SO:0001399	\N	\N	"A post translationally modified serine amino acid feature." [SO:ke]	SO:0001399	"A post translationally modified serine amino acid feature." [SO:ke]	46274	\N	\N	sequence	0	SO	modified_L_serine	modified_L_serine
SO:0001385	SO:0001399	\N	"A post translationally modified amino acid feature." [SO:ke]	SO:0001399	"A post translationally modified serine amino acid feature." [SO:ke]	491008	\N	\N	sequence	1	SO	modified_amino_acid_feature	modified_L_serine
SO:0001237	SO:0001385	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001399	"A post translationally modified serine amino acid feature." [SO:ke]	1073573	\N	\N	sequence	2	SO	amino_acid	modified_L_serine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001399	"A post translationally modified serine amino acid feature." [SO:ke]	1904666	\N	SOFA	sequence	3	SO	polypeptide	modified_L_serine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001399	"A post translationally modified serine amino acid feature." [SO:ke]	1904667	\N	SOFA	sequence	3	SO	biological_region	modified_L_serine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001399	"A post translationally modified serine amino acid feature." [SO:ke]	2929107	SOFA	SOFA	sequence	4	SO	biological_region	modified_L_serine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001399	"A post translationally modified serine amino acid feature." [SO:ke]	4002320	SOFA	SOFA	sequence	5	SO	region	modified_L_serine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001399	"A post translationally modified serine amino acid feature." [SO:ke]	4385832	SOFA	SOFA	sequence	6	SO	sequence_feature	modified_L_serine
SO:0001400	\N	\N	"A post translationally modified lysine amino acid feature." [SO:ke]	SO:0001400	"A post translationally modified lysine amino acid feature." [SO:ke]	46275	\N	\N	sequence	0	SO	modified_L_lysine	modified_L_lysine
SO:0001385	SO:0001400	\N	"A post translationally modified amino acid feature." [SO:ke]	SO:0001400	"A post translationally modified lysine amino acid feature." [SO:ke]	491009	\N	\N	sequence	1	SO	modified_amino_acid_feature	modified_L_lysine
SO:0001237	SO:0001385	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001400	"A post translationally modified lysine amino acid feature." [SO:ke]	1073574	\N	\N	sequence	2	SO	amino_acid	modified_L_lysine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001400	"A post translationally modified lysine amino acid feature." [SO:ke]	1904668	\N	SOFA	sequence	3	SO	polypeptide	modified_L_lysine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001400	"A post translationally modified lysine amino acid feature." [SO:ke]	1904669	\N	SOFA	sequence	3	SO	biological_region	modified_L_lysine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001400	"A post translationally modified lysine amino acid feature." [SO:ke]	2929109	SOFA	SOFA	sequence	4	SO	biological_region	modified_L_lysine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001400	"A post translationally modified lysine amino acid feature." [SO:ke]	4002322	SOFA	SOFA	sequence	5	SO	region	modified_L_lysine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001400	"A post translationally modified lysine amino acid feature." [SO:ke]	4385833	SOFA	SOFA	sequence	6	SO	sequence_feature	modified_L_lysine
SO:0001401	\N	\N	"A post translationally modified leucine amino acid feature." [SO:ke]	SO:0001401	"A post translationally modified leucine amino acid feature." [SO:ke]	46276	\N	\N	sequence	0	SO	modified_L_leucine	modified_L_leucine
SO:0001385	SO:0001401	\N	"A post translationally modified amino acid feature." [SO:ke]	SO:0001401	"A post translationally modified leucine amino acid feature." [SO:ke]	491010	\N	\N	sequence	1	SO	modified_amino_acid_feature	modified_L_leucine
SO:0001237	SO:0001385	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001401	"A post translationally modified leucine amino acid feature." [SO:ke]	1073575	\N	\N	sequence	2	SO	amino_acid	modified_L_leucine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001401	"A post translationally modified leucine amino acid feature." [SO:ke]	1904670	\N	SOFA	sequence	3	SO	polypeptide	modified_L_leucine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001401	"A post translationally modified leucine amino acid feature." [SO:ke]	1904671	\N	SOFA	sequence	3	SO	biological_region	modified_L_leucine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001401	"A post translationally modified leucine amino acid feature." [SO:ke]	2929111	SOFA	SOFA	sequence	4	SO	biological_region	modified_L_leucine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001401	"A post translationally modified leucine amino acid feature." [SO:ke]	4002324	SOFA	SOFA	sequence	5	SO	region	modified_L_leucine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001401	"A post translationally modified leucine amino acid feature." [SO:ke]	4385834	SOFA	SOFA	sequence	6	SO	sequence_feature	modified_L_leucine
SO:0001402	\N	\N	"A post translationally modified selenocysteine amino acid feature." [SO:ke]	SO:0001402	"A post translationally modified selenocysteine amino acid feature." [SO:ke]	46277	\N	\N	sequence	0	SO	modified_L_selenocysteine	modified_L_selenocysteine
SO:0001385	SO:0001402	\N	"A post translationally modified amino acid feature." [SO:ke]	SO:0001402	"A post translationally modified selenocysteine amino acid feature." [SO:ke]	491011	\N	\N	sequence	1	SO	modified_amino_acid_feature	modified_L_selenocysteine
SO:0001237	SO:0001385	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001402	"A post translationally modified selenocysteine amino acid feature." [SO:ke]	1073576	\N	\N	sequence	2	SO	amino_acid	modified_L_selenocysteine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001402	"A post translationally modified selenocysteine amino acid feature." [SO:ke]	1904672	\N	SOFA	sequence	3	SO	polypeptide	modified_L_selenocysteine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001402	"A post translationally modified selenocysteine amino acid feature." [SO:ke]	1904673	\N	SOFA	sequence	3	SO	biological_region	modified_L_selenocysteine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001402	"A post translationally modified selenocysteine amino acid feature." [SO:ke]	2929113	SOFA	SOFA	sequence	4	SO	biological_region	modified_L_selenocysteine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001402	"A post translationally modified selenocysteine amino acid feature." [SO:ke]	4002326	SOFA	SOFA	sequence	5	SO	region	modified_L_selenocysteine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001402	"A post translationally modified selenocysteine amino acid feature." [SO:ke]	4385835	SOFA	SOFA	sequence	6	SO	sequence_feature	modified_L_selenocysteine
SO:0001403	\N	\N	"A post translationally modified valine amino acid feature." [SO:ke]	SO:0001403	"A post translationally modified valine amino acid feature." [SO:ke]	46278	\N	\N	sequence	0	SO	modified_L_valine	modified_L_valine
SO:0001385	SO:0001403	\N	"A post translationally modified amino acid feature." [SO:ke]	SO:0001403	"A post translationally modified valine amino acid feature." [SO:ke]	491012	\N	\N	sequence	1	SO	modified_amino_acid_feature	modified_L_valine
SO:0001237	SO:0001385	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001403	"A post translationally modified valine amino acid feature." [SO:ke]	1073577	\N	\N	sequence	2	SO	amino_acid	modified_L_valine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001403	"A post translationally modified valine amino acid feature." [SO:ke]	1904674	\N	SOFA	sequence	3	SO	polypeptide	modified_L_valine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001403	"A post translationally modified valine amino acid feature." [SO:ke]	1904675	\N	SOFA	sequence	3	SO	biological_region	modified_L_valine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001403	"A post translationally modified valine amino acid feature." [SO:ke]	2929115	SOFA	SOFA	sequence	4	SO	biological_region	modified_L_valine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001403	"A post translationally modified valine amino acid feature." [SO:ke]	4002328	SOFA	SOFA	sequence	5	SO	region	modified_L_valine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001403	"A post translationally modified valine amino acid feature." [SO:ke]	4385836	SOFA	SOFA	sequence	6	SO	sequence_feature	modified_L_valine
SO:0001404	\N	\N	"A post translationally modified proline amino acid feature." [SO:ke]	SO:0001404	"A post translationally modified proline amino acid feature." [SO:ke]	46279	\N	\N	sequence	0	SO	modified_L_proline	modified_L_proline
SO:0001385	SO:0001404	\N	"A post translationally modified amino acid feature." [SO:ke]	SO:0001404	"A post translationally modified proline amino acid feature." [SO:ke]	491013	\N	\N	sequence	1	SO	modified_amino_acid_feature	modified_L_proline
SO:0001237	SO:0001385	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001404	"A post translationally modified proline amino acid feature." [SO:ke]	1073578	\N	\N	sequence	2	SO	amino_acid	modified_L_proline
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001404	"A post translationally modified proline amino acid feature." [SO:ke]	1904676	\N	SOFA	sequence	3	SO	polypeptide	modified_L_proline
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001404	"A post translationally modified proline amino acid feature." [SO:ke]	1904677	\N	SOFA	sequence	3	SO	biological_region	modified_L_proline
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001404	"A post translationally modified proline amino acid feature." [SO:ke]	2929117	SOFA	SOFA	sequence	4	SO	biological_region	modified_L_proline
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001404	"A post translationally modified proline amino acid feature." [SO:ke]	4002330	SOFA	SOFA	sequence	5	SO	region	modified_L_proline
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001404	"A post translationally modified proline amino acid feature." [SO:ke]	4385837	SOFA	SOFA	sequence	6	SO	sequence_feature	modified_L_proline
SO:0001405	\N	\N	"A post translationally modified tyrosine amino acid feature." [SO:ke]	SO:0001405	"A post translationally modified tyrosine amino acid feature." [SO:ke]	46280	\N	\N	sequence	0	SO	modified_L_tyrosine	modified_L_tyrosine
SO:0001385	SO:0001405	\N	"A post translationally modified amino acid feature." [SO:ke]	SO:0001405	"A post translationally modified tyrosine amino acid feature." [SO:ke]	491014	\N	\N	sequence	1	SO	modified_amino_acid_feature	modified_L_tyrosine
SO:0001237	SO:0001385	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001405	"A post translationally modified tyrosine amino acid feature." [SO:ke]	1073579	\N	\N	sequence	2	SO	amino_acid	modified_L_tyrosine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001405	"A post translationally modified tyrosine amino acid feature." [SO:ke]	1904678	\N	SOFA	sequence	3	SO	polypeptide	modified_L_tyrosine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001405	"A post translationally modified tyrosine amino acid feature." [SO:ke]	1904679	\N	SOFA	sequence	3	SO	biological_region	modified_L_tyrosine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001405	"A post translationally modified tyrosine amino acid feature." [SO:ke]	2929119	SOFA	SOFA	sequence	4	SO	biological_region	modified_L_tyrosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001405	"A post translationally modified tyrosine amino acid feature." [SO:ke]	4002332	SOFA	SOFA	sequence	5	SO	region	modified_L_tyrosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001405	"A post translationally modified tyrosine amino acid feature." [SO:ke]	4385838	SOFA	SOFA	sequence	6	SO	sequence_feature	modified_L_tyrosine
SO:0001406	\N	\N	"A post translationally modified arginine amino acid feature." [SO:ke]	SO:0001406	"A post translationally modified arginine amino acid feature." [SO:ke]	46281	\N	\N	sequence	0	SO	modified_L_arginine	modified_L_arginine
SO:0001385	SO:0001406	\N	"A post translationally modified amino acid feature." [SO:ke]	SO:0001406	"A post translationally modified arginine amino acid feature." [SO:ke]	491015	\N	\N	sequence	1	SO	modified_amino_acid_feature	modified_L_arginine
SO:0001237	SO:0001385	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001406	"A post translationally modified arginine amino acid feature." [SO:ke]	1073580	\N	\N	sequence	2	SO	amino_acid	modified_L_arginine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001406	"A post translationally modified arginine amino acid feature." [SO:ke]	1904680	\N	SOFA	sequence	3	SO	polypeptide	modified_L_arginine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001406	"A post translationally modified arginine amino acid feature." [SO:ke]	1904681	\N	SOFA	sequence	3	SO	biological_region	modified_L_arginine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001406	"A post translationally modified arginine amino acid feature." [SO:ke]	2929121	SOFA	SOFA	sequence	4	SO	biological_region	modified_L_arginine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001406	"A post translationally modified arginine amino acid feature." [SO:ke]	4002334	SOFA	SOFA	sequence	5	SO	region	modified_L_arginine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001406	"A post translationally modified arginine amino acid feature." [SO:ke]	4385839	SOFA	SOFA	sequence	6	SO	sequence_feature	modified_L_arginine
SO:0001407	\N	\N	"An attribute describing the nature of a proteinaceous polymer, where by the amino acid units are joined by peptide bonds." [SO:ke]	SO:0001407	"An attribute describing the nature of a proteinaceous polymer, where by the amino acid units are joined by peptide bonds." [SO:ke]	46282	\N	\N	sequence	0	SO	peptidyl	peptidyl
SO:0000443	SO:0001407	\N	"An attribute to describe the kind of biological sequence." [SO:ke]	SO:0001407	"An attribute describing the nature of a proteinaceous polymer, where by the amino acid units are joined by peptide bonds." [SO:ke]	491016	\N	\N	sequence	1	SO	polymer_attribute	peptidyl
SO:0000400	SO:0000443	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001407	"An attribute describing the nature of a proteinaceous polymer, where by the amino acid units are joined by peptide bonds." [SO:ke]	1073581	\N	\N	sequence	2	SO	sequence_attribute	peptidyl
SO:0001408	\N	\N	"The C-terminal residues of a polypeptide which are exchanged for a GPI-anchor." [EBI:rh]	SO:0001408	"The C-terminal residues of a polypeptide which are exchanged for a GPI-anchor." [EBI:rh]	46283	\N	\N	sequence	0	SO	cleaved_for_gpi_anchor_region	cleaved_for_gpi_anchor_region
SO:0100011	SO:0001408	\N	"The cleaved_peptide_region is the region of a peptide sequence that is cleaved during maturation." [EBIBS:GAR]	SO:0001408	"The C-terminal residues of a polypeptide which are exchanged for a GPI-anchor." [EBI:rh]	491017	\N	biosapiens,SOFA	sequence	1	SO	cleaved_peptide_region	cleaved_for_gpi_anchor_region
SO:0000839	SO:0100011	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001408	"The C-terminal residues of a polypeptide which are exchanged for a GPI-anchor." [EBI:rh]	1073582	biosapiens,SOFA	biosapiens,SOFA	sequence	2	SO	polypeptide_region	cleaved_for_gpi_anchor_region
SO:0001063	SO:0100011	\N	"An immature_peptide_region is the extent of the peptide after it has been translated and before any processing occurs." [EBIBS:GAR]	SO:0001408	"The C-terminal residues of a polypeptide which are exchanged for a GPI-anchor." [EBI:rh]	1073583	biosapiens,SOFA	biosapiens,SOFA	sequence	2	SO	immature_peptide_region	cleaved_for_gpi_anchor_region
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001408	"The C-terminal residues of a polypeptide which are exchanged for a GPI-anchor." [EBI:rh]	2929125	biosapiens,SOFA	SOFA	sequence	4	SO	polypeptide	cleaved_for_gpi_anchor_region
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001408	"The C-terminal residues of a polypeptide which are exchanged for a GPI-anchor." [EBI:rh]	2929126	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	cleaved_for_gpi_anchor_region
SO:0000839	SO:0001063	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001408	"The C-terminal residues of a polypeptide which are exchanged for a GPI-anchor." [EBI:rh]	1904684	biosapiens,SOFA	biosapiens,SOFA	sequence	3	SO	polypeptide_region	cleaved_for_gpi_anchor_region
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001408	"The C-terminal residues of a polypeptide which are exchanged for a GPI-anchor." [EBI:rh]	3173970	SOFA	SOFA	sequence	5	SO	biological_region	cleaved_for_gpi_anchor_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001408	"The C-terminal residues of a polypeptide which are exchanged for a GPI-anchor." [EBI:rh]	4385840	SOFA	SOFA	sequence	6	SO	region	cleaved_for_gpi_anchor_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001408	"The C-terminal residues of a polypeptide which are exchanged for a GPI-anchor." [EBI:rh]	5180727	SOFA	SOFA	sequence	7	SO	sequence_feature	cleaved_for_gpi_anchor_region
SO:0001409	\N	SOFA	"A region which is intended for use in an experiment." [SO:cb]	SO:0001409	"A region which is intended for use in an experiment." [SO:cb]	46284	\N	SOFA	sequence	0	SO	biomaterial_region	biomaterial_region
SO:0000001	SO:0001409	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001409	"A region which is intended for use in an experiment." [SO:cb]	491018	SOFA	SOFA	sequence	1	SO	region	biomaterial_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001409	"A region which is intended for use in an experiment." [SO:cb]	1073584	SOFA	SOFA	sequence	2	SO	sequence_feature	biomaterial_region
SO:0001410	\N	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001410	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	46285	\N	SOFA	sequence	0	SO	experimental_feature	experimental_feature
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001410	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	491019	SOFA	SOFA	sequence	1	SO	region	experimental_feature
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001410	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	1073585	SOFA	SOFA	sequence	2	SO	sequence_feature	experimental_feature
SO:0001411	\N	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001411	"A region defined by its disposition to be involved in a biological process." [SO:cb]	46286	\N	SOFA	sequence	0	SO	biological_region	biological_region
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001411	"A region defined by its disposition to be involved in a biological process." [SO:cb]	491020	SOFA	SOFA	sequence	1	SO	region	biological_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001411	"A region defined by its disposition to be involved in a biological process." [SO:cb]	1073586	SOFA	SOFA	sequence	2	SO	sequence_feature	biological_region
SO:0001412	\N	SOFA	"A region that is defined according to its relations with other regions within the same sequence." [SO:cb]	SO:0001412	"A region that is defined according to its relations with other regions within the same sequence." [SO:cb]	46287	\N	SOFA	sequence	0	SO	topologically_defined_region	topologically_defined_region
SO:0000001	SO:0001412	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001412	"A region that is defined according to its relations with other regions within the same sequence." [SO:cb]	491021	SOFA	SOFA	sequence	1	SO	region	topologically_defined_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001412	"A region that is defined according to its relations with other regions within the same sequence." [SO:cb]	1073587	SOFA	SOFA	sequence	2	SO	sequence_feature	topologically_defined_region
SO:0001413	\N	\N	"The point within a chromosome where a translocation begins or ends." [SO:cb]	SO:0001413	"The point within a chromosome where a translocation begins or ends." [SO:cb]	46288	\N	\N	sequence	0	SO	translocation_breakpoint	translocation_breakpoint
SO:0001021	SO:0001413	\N	"" []	SO:0001413	"The point within a chromosome where a translocation begins or ends." [SO:cb]	491022	\N	\N	sequence	1	SO	chromosome_breakpoint	translocation_breakpoint
SO:0000340	SO:0001021	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0001413	"The point within a chromosome where a translocation begins or ends." [SO:cb]	1073588	\N	SOFA	sequence	2	SO	chromosome	translocation_breakpoint
SO:0000699	SO:0001021	\N	"A sequence_feature with an extent of zero." [SO:ke]	SO:0001413	"The point within a chromosome where a translocation begins or ends." [SO:cb]	1073589	\N	SOFA	sequence	2	SO	junction	translocation_breakpoint
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001413	"The point within a chromosome where a translocation begins or ends." [SO:cb]	1904685	SOFA	SOFA	sequence	3	SO	replicon	translocation_breakpoint
SO:0000110	SO:0000699	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001413	"The point within a chromosome where a translocation begins or ends." [SO:cb]	1904686	SOFA	SOFA	sequence	3	SO	sequence_feature	translocation_breakpoint
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001413	"The point within a chromosome where a translocation begins or ends." [SO:cb]	2929127	SOFA	SOFA	sequence	4	SO	biological_region	translocation_breakpoint
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001413	"The point within a chromosome where a translocation begins or ends." [SO:cb]	4002337	SOFA	SOFA	sequence	5	SO	region	translocation_breakpoint
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001413	"The point within a chromosome where a translocation begins or ends." [SO:cb]	4966663	SOFA	SOFA	sequence	6	SO	sequence_feature	translocation_breakpoint
SO:0001414	\N	\N	"The point within a chromosome where a insertion begins or ends." [SO:cb]	SO:0001414	"The point within a chromosome where a insertion begins or ends." [SO:cb]	46289	\N	\N	sequence	0	SO	insertion_breakpoint	insertion_breakpoint
SO:0001021	SO:0001414	\N	"" []	SO:0001414	"The point within a chromosome where a insertion begins or ends." [SO:cb]	491023	\N	\N	sequence	1	SO	chromosome_breakpoint	insertion_breakpoint
SO:0000340	SO:0001021	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0001414	"The point within a chromosome where a insertion begins or ends." [SO:cb]	1073590	\N	SOFA	sequence	2	SO	chromosome	insertion_breakpoint
SO:0000699	SO:0001021	\N	"A sequence_feature with an extent of zero." [SO:ke]	SO:0001414	"The point within a chromosome where a insertion begins or ends." [SO:cb]	1073591	\N	SOFA	sequence	2	SO	junction	insertion_breakpoint
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001414	"The point within a chromosome where a insertion begins or ends." [SO:cb]	1904687	SOFA	SOFA	sequence	3	SO	replicon	insertion_breakpoint
SO:0000110	SO:0000699	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001414	"The point within a chromosome where a insertion begins or ends." [SO:cb]	1904688	SOFA	SOFA	sequence	3	SO	sequence_feature	insertion_breakpoint
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001414	"The point within a chromosome where a insertion begins or ends." [SO:cb]	2929128	SOFA	SOFA	sequence	4	SO	biological_region	insertion_breakpoint
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001414	"The point within a chromosome where a insertion begins or ends." [SO:cb]	4002338	SOFA	SOFA	sequence	5	SO	region	insertion_breakpoint
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001414	"The point within a chromosome where a insertion begins or ends." [SO:cb]	4966664	SOFA	SOFA	sequence	6	SO	sequence_feature	insertion_breakpoint
SO:0001415	\N	\N	"The point within a chromosome where a deletion begins or ends." [SO:cb]	SO:0001415	"The point within a chromosome where a deletion begins or ends." [SO:cb]	46290	\N	\N	sequence	0	SO	deletion_breakpoint	deletion_breakpoint
SO:0001021	SO:0001415	\N	"" []	SO:0001415	"The point within a chromosome where a deletion begins or ends." [SO:cb]	491024	\N	\N	sequence	1	SO	chromosome_breakpoint	deletion_breakpoint
SO:0000340	SO:0001021	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0001415	"The point within a chromosome where a deletion begins or ends." [SO:cb]	1073592	\N	SOFA	sequence	2	SO	chromosome	deletion_breakpoint
SO:0000699	SO:0001021	\N	"A sequence_feature with an extent of zero." [SO:ke]	SO:0001415	"The point within a chromosome where a deletion begins or ends." [SO:cb]	1073593	\N	SOFA	sequence	2	SO	junction	deletion_breakpoint
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001415	"The point within a chromosome where a deletion begins or ends." [SO:cb]	1904689	SOFA	SOFA	sequence	3	SO	replicon	deletion_breakpoint
SO:0000110	SO:0000699	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001415	"The point within a chromosome where a deletion begins or ends." [SO:cb]	1904690	SOFA	SOFA	sequence	3	SO	sequence_feature	deletion_breakpoint
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001415	"The point within a chromosome where a deletion begins or ends." [SO:cb]	2929129	SOFA	SOFA	sequence	4	SO	biological_region	deletion_breakpoint
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001415	"The point within a chromosome where a deletion begins or ends." [SO:cb]	4002339	SOFA	SOFA	sequence	5	SO	region	deletion_breakpoint
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001415	"The point within a chromosome where a deletion begins or ends." [SO:cb]	4966665	SOFA	SOFA	sequence	6	SO	sequence_feature	deletion_breakpoint
SO:0001416	\N	\N	"A flanking region located five prime of a specific region." [SO:chado]	SO:0001416	"A flanking region located five prime of a specific region." [SO:chado]	46291	\N	\N	sequence	0	SO	five_prime_flanking_region	five_prime_flanking_region
SO:0000239	SO:0001416	\N	"The sequences extending on either side of a specific region." [SO:ke]	SO:0001416	"A flanking region located five prime of a specific region." [SO:chado]	491025	\N	SOFA	sequence	1	SO	flanking_region	five_prime_flanking_region
SO:0001412	SO:0000239	\N	"A region that is defined according to its relations with other regions within the same sequence." [SO:cb]	SO:0001416	"A flanking region located five prime of a specific region." [SO:chado]	1073594	SOFA	SOFA	sequence	2	SO	topologically_defined_region	five_prime_flanking_region
SO:0000001	SO:0001412	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001416	"A flanking region located five prime of a specific region." [SO:chado]	1904691	SOFA	SOFA	sequence	3	SO	region	five_prime_flanking_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001416	"A flanking region located five prime of a specific region." [SO:chado]	2929130	SOFA	SOFA	sequence	4	SO	sequence_feature	five_prime_flanking_region
SO:0001417	\N	\N	"A flanking region located three prime of a specific region." [SO:chado]	SO:0001417	"A flanking region located three prime of a specific region." [SO:chado]	46292	\N	\N	sequence	0	SO	three_prime_flanking_region	three_prime_flanking_region
SO:0000239	SO:0001417	\N	"The sequences extending on either side of a specific region." [SO:ke]	SO:0001417	"A flanking region located three prime of a specific region." [SO:chado]	491026	\N	SOFA	sequence	1	SO	flanking_region	three_prime_flanking_region
SO:0001412	SO:0000239	\N	"A region that is defined according to its relations with other regions within the same sequence." [SO:cb]	SO:0001417	"A flanking region located three prime of a specific region." [SO:chado]	1073595	SOFA	SOFA	sequence	2	SO	topologically_defined_region	three_prime_flanking_region
SO:0000001	SO:0001412	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001417	"A flanking region located three prime of a specific region." [SO:chado]	1904692	SOFA	SOFA	sequence	3	SO	region	three_prime_flanking_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001417	"A flanking region located three prime of a specific region." [SO:chado]	2929131	SOFA	SOFA	sequence	4	SO	sequence_feature	three_prime_flanking_region
SO:0001418	\N	\N	"An experimental region, defined by a tiling array experiment to be transcribed at some level." [SO:ke]	SO:0001418	"An experimental region, defined by a tiling array experiment to be transcribed at some level." [SO:ke]	46293	\N	\N	sequence	0	SO	transcribed_fragment	transcribed_fragment
SO:0001410	SO:0001418	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001418	"An experimental region, defined by a tiling array experiment to be transcribed at some level." [SO:ke]	491027	\N	SOFA	sequence	1	SO	experimental_feature	transcribed_fragment
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001418	"An experimental region, defined by a tiling array experiment to be transcribed at some level." [SO:ke]	1073596	SOFA	SOFA	sequence	2	SO	region	transcribed_fragment
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001418	"An experimental region, defined by a tiling array experiment to be transcribed at some level." [SO:ke]	1904693	SOFA	SOFA	sequence	3	SO	sequence_feature	transcribed_fragment
SO:0001419	\N	SOFA	"Intronic 2 bp region bordering exon. A splice_site that adjacent_to exon and overlaps intron." [SO:cjm, SO:ke]	SO:0001419	"Intronic 2 bp region bordering exon. A splice_site that adjacent_to exon and overlaps intron." [SO:cjm, SO:ke]	46294	\N	SOFA	sequence	0	SO	cis_splice_site	cis_splice_site
SO:0000162	SO:0001419	SOFA	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	SO:0001419	"Intronic 2 bp region bordering exon. A splice_site that adjacent_to exon and overlaps intron." [SO:cjm, SO:ke]	491028	SOFA	SOFA	sequence	1	SO	splice_site	cis_splice_site
SO:0000835	SO:0000162	SOFA	"A part of a primary transcript." [SO:ke]	SO:0001419	"Intronic 2 bp region bordering exon. A splice_site that adjacent_to exon and overlaps intron." [SO:cjm, SO:ke]	1073597	SOFA	SOFA	sequence	2	SO	primary_transcript_region	cis_splice_site
SO:0000185	SO:0000835	SOFA	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001419	"Intronic 2 bp region bordering exon. A splice_site that adjacent_to exon and overlaps intron." [SO:cjm, SO:ke]	1904694	SOFA	SOFA	sequence	3	SO	primary_transcript	cis_splice_site
SO:0000833	SO:0000835	SOFA	"A region of a transcript." [SO:ke]	SO:0001419	"Intronic 2 bp region bordering exon. A splice_site that adjacent_to exon and overlaps intron." [SO:cjm, SO:ke]	1904695	SOFA	SOFA	sequence	3	SO	transcript_region	cis_splice_site
SO:0000673	SO:0000185	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001419	"Intronic 2 bp region bordering exon. A splice_site that adjacent_to exon and overlaps intron." [SO:cjm, SO:ke]	2929132	SOFA	SOFA	sequence	4	SO	transcript	cis_splice_site
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001419	"Intronic 2 bp region bordering exon. A splice_site that adjacent_to exon and overlaps intron." [SO:cjm, SO:ke]	2929133	SOFA	SOFA	sequence	4	SO	transcript	cis_splice_site
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001419	"Intronic 2 bp region bordering exon. A splice_site that adjacent_to exon and overlaps intron." [SO:cjm, SO:ke]	2929134	SOFA	SOFA	sequence	4	SO	biological_region	cis_splice_site
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0001419	"Intronic 2 bp region bordering exon. A splice_site that adjacent_to exon and overlaps intron." [SO:cjm, SO:ke]	4002340	SOFA	SOFA	sequence	5	SO	gene_member_region	cis_splice_site
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001419	"Intronic 2 bp region bordering exon. A splice_site that adjacent_to exon and overlaps intron." [SO:cjm, SO:ke]	5741318	SOFA	SOFA	sequence	7	SO	region	cis_splice_site
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001419	"Intronic 2 bp region bordering exon. A splice_site that adjacent_to exon and overlaps intron." [SO:cjm, SO:ke]	4966666	SOFA	SOFA	sequence	6	SO	biological_region	cis_splice_site
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001419	"Intronic 2 bp region bordering exon. A splice_site that adjacent_to exon and overlaps intron." [SO:cjm, SO:ke]	5996435	SOFA	SOFA	sequence	8	SO	sequence_feature	cis_splice_site
SO:0001420	\N	SOFA	"Primary transcript region bordering trans-splice junction." [SO:ke]	SO:0001420	"Primary transcript region bordering trans-splice junction." [SO:ke]	46295	\N	SOFA	sequence	0	SO	trans_splice_site	trans_splice_site
SO:0000162	SO:0001420	SOFA	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	SO:0001420	"Primary transcript region bordering trans-splice junction." [SO:ke]	491029	SOFA	SOFA	sequence	1	SO	splice_site	trans_splice_site
SO:0000835	SO:0000162	SOFA	"A part of a primary transcript." [SO:ke]	SO:0001420	"Primary transcript region bordering trans-splice junction." [SO:ke]	1073598	SOFA	SOFA	sequence	2	SO	primary_transcript_region	trans_splice_site
SO:0000185	SO:0000835	SOFA	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001420	"Primary transcript region bordering trans-splice junction." [SO:ke]	1904696	SOFA	SOFA	sequence	3	SO	primary_transcript	trans_splice_site
SO:0000833	SO:0000835	SOFA	"A region of a transcript." [SO:ke]	SO:0001420	"Primary transcript region bordering trans-splice junction." [SO:ke]	1904697	SOFA	SOFA	sequence	3	SO	transcript_region	trans_splice_site
SO:0000673	SO:0000185	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001420	"Primary transcript region bordering trans-splice junction." [SO:ke]	2929135	SOFA	SOFA	sequence	4	SO	transcript	trans_splice_site
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001420	"Primary transcript region bordering trans-splice junction." [SO:ke]	2929136	SOFA	SOFA	sequence	4	SO	transcript	trans_splice_site
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001420	"Primary transcript region bordering trans-splice junction." [SO:ke]	2929137	SOFA	SOFA	sequence	4	SO	biological_region	trans_splice_site
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0001420	"Primary transcript region bordering trans-splice junction." [SO:ke]	4002342	SOFA	SOFA	sequence	5	SO	gene_member_region	trans_splice_site
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001420	"Primary transcript region bordering trans-splice junction." [SO:ke]	5741319	SOFA	SOFA	sequence	7	SO	region	trans_splice_site
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001420	"Primary transcript region bordering trans-splice junction." [SO:ke]	4966668	SOFA	SOFA	sequence	6	SO	biological_region	trans_splice_site
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001420	"Primary transcript region bordering trans-splice junction." [SO:ke]	5996436	SOFA	SOFA	sequence	8	SO	sequence_feature	trans_splice_site
SO:0001421	\N	\N	"The boundary between an intron and an exon." [SO:ke]	SO:0001421	"The boundary between an intron and an exon." [SO:ke]	46296	\N	\N	sequence	0	SO	splice_junction	splice_junction
SO:0000699	SO:0001421	\N	"A sequence_feature with an extent of zero." [SO:ke]	SO:0001421	"The boundary between an intron and an exon." [SO:ke]	491030	\N	SOFA	sequence	1	SO	junction	splice_junction
SO:0000110	SO:0000699	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001421	"The boundary between an intron and an exon." [SO:ke]	1073599	SOFA	SOFA	sequence	2	SO	sequence_feature	splice_junction
SO:0001422	\N	\N	"A region of a polypeptide, involved in the transition from one conformational state to another." [SO:ke]	SO:0001422	"A region of a polypeptide, involved in the transition from one conformational state to another." [SO:ke]	46297	\N	\N	sequence	0	SO	conformational_switch	conformational_switch
SO:0100001	SO:0001422	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001422	"A region of a polypeptide, involved in the transition from one conformational state to another." [SO:ke]	491031	\N	biosapiens	sequence	1	SO	biochemical_region_of_peptide	conformational_switch
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001422	"A region of a polypeptide, involved in the transition from one conformational state to another." [SO:ke]	1073600	biosapiens	biosapiens	sequence	2	SO	polypeptide_motif	conformational_switch
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001422	"A region of a polypeptide, involved in the transition from one conformational state to another." [SO:ke]	1904698	biosapiens	biosapiens	sequence	3	SO	polypeptide_conserved_region	conformational_switch
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001422	"A region of a polypeptide, involved in the transition from one conformational state to another." [SO:ke]	2929138	biosapiens	biosapiens,SOFA	sequence	4	SO	polypeptide_region	conformational_switch
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001422	"A region of a polypeptide, involved in the transition from one conformational state to another." [SO:ke]	4002344	biosapiens,SOFA	SOFA	sequence	5	SO	polypeptide	conformational_switch
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001422	"A region of a polypeptide, involved in the transition from one conformational state to another." [SO:ke]	4002345	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	conformational_switch
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001422	"A region of a polypeptide, involved in the transition from one conformational state to another." [SO:ke]	4966670	SOFA	SOFA	sequence	6	SO	biological_region	conformational_switch
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001422	"A region of a polypeptide, involved in the transition from one conformational state to another." [SO:ke]	5741320	SOFA	SOFA	sequence	7	SO	region	conformational_switch
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001422	"A region of a polypeptide, involved in the transition from one conformational state to another." [SO:ke]	6146676	SOFA	SOFA	sequence	8	SO	sequence_feature	conformational_switch
SO:0001423	\N	\N	"A read produced by the dye terminator method of sequencing." [SO:ke]	SO:0001423	"A read produced by the dye terminator method of sequencing." [SO:ke]	46298	\N	\N	sequence	0	SO	dye_terminator_read	dye_terminator_read
SO:0000150	SO:0001423	\N	"A sequence obtained from a single sequencing experiment. Typically a read is produced when a base calling program interprets information from a chromatogram trace file produced from a sequencing machine." [SO:rd]	SO:0001423	"A read produced by the dye terminator method of sequencing." [SO:ke]	491032	\N	SOFA	sequence	1	SO	read	dye_terminator_read
SO:0000143	SO:0000150	\N	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0001423	"A read produced by the dye terminator method of sequencing." [SO:ke]	1073601	SOFA	SOFA	sequence	2	SO	assembly_component	dye_terminator_read
SO:0000149	SO:0000150	\N	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	SO:0001423	"A read produced by the dye terminator method of sequencing." [SO:ke]	1073602	SOFA	SOFA	sequence	2	SO	contig	dye_terminator_read
SO:0001410	SO:0000143	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001423	"A read produced by the dye terminator method of sequencing." [SO:ke]	2929140	SOFA	SOFA	sequence	4	SO	experimental_feature	dye_terminator_read
SO:0000143	SO:0000149	\N	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0001423	"A read produced by the dye terminator method of sequencing." [SO:ke]	1904700	SOFA	SOFA	sequence	3	SO	assembly_component	dye_terminator_read
SO:0000148	SO:0000149	\N	"One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's." [SO:ls]	SO:0001423	"A read produced by the dye terminator method of sequencing." [SO:ke]	1904701	SOFA	SOFA	sequence	3	SO	supercontig	dye_terminator_read
SO:0000353	SO:0000149	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001423	"A read produced by the dye terminator method of sequencing." [SO:ke]	1904702	SOFA	SOFA	sequence	3	SO	sequence_assembly	dye_terminator_read
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001423	"A read produced by the dye terminator method of sequencing." [SO:ke]	6469758	SOFA	SOFA	sequence	9	SO	region	dye_terminator_read
SO:0000719	SO:0000148	\N	"An ordered and oriented set of scaffolds based on somewhat weaker sets of inferential evidence such as one set of mate pair reads together with supporting evidence from ESTs or location of markers from SNP or microsatellite maps, or cytogenetic localization of contained markers." [FB:WG]	SO:0001423	"A read produced by the dye terminator method of sequencing." [SO:ke]	2929141	SOFA	SOFA	sequence	4	SO	ultracontig	dye_terminator_read
SO:0001876	SO:0000148	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001423	"A read produced by the dye terminator method of sequencing." [SO:ke]	2929142	SOFA	\N	sequence	4	SO	partial_genomic_sequence_assembly	dye_terminator_read
SO:0001248	SO:0000353	\N	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0001423	"A read produced by the dye terminator method of sequencing." [SO:ke]	5407475	SOFA	SOFA	sequence	7	SO	assembly	dye_terminator_read
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001423	"A read produced by the dye terminator method of sequencing." [SO:ke]	6778556	SOFA	SOFA	sequence	10	SO	sequence_feature	dye_terminator_read
SO:0001876	SO:0000719	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001423	"A read produced by the dye terminator method of sequencing." [SO:ke]	4002347	SOFA	\N	sequence	5	SO	partial_genomic_sequence_assembly	dye_terminator_read
SO:0000353	SO:0001876	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001423	"A read produced by the dye terminator method of sequencing." [SO:ke]	4966672	\N	SOFA	sequence	6	SO	sequence_assembly	dye_terminator_read
SO:0001410	SO:0001248	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001423	"A read produced by the dye terminator method of sequencing." [SO:ke]	5876448	SOFA	SOFA	sequence	8	SO	experimental_feature	dye_terminator_read
SO:0001424	\N	\N	"A read produced by pyrosequencing technology." [SO:ke]	SO:0001424	"A read produced by pyrosequencing technology." [SO:ke]	46299	\N	\N	sequence	0	SO	pyrosequenced_read	pyrosequenced_read
SO:0000150	SO:0001424	\N	"A sequence obtained from a single sequencing experiment. Typically a read is produced when a base calling program interprets information from a chromatogram trace file produced from a sequencing machine." [SO:rd]	SO:0001424	"A read produced by pyrosequencing technology." [SO:ke]	491033	\N	SOFA	sequence	1	SO	read	pyrosequenced_read
SO:0000143	SO:0000150	\N	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0001424	"A read produced by pyrosequencing technology." [SO:ke]	1073603	SOFA	SOFA	sequence	2	SO	assembly_component	pyrosequenced_read
SO:0000149	SO:0000150	\N	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	SO:0001424	"A read produced by pyrosequencing technology." [SO:ke]	1073604	SOFA	SOFA	sequence	2	SO	contig	pyrosequenced_read
SO:0001410	SO:0000143	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001424	"A read produced by pyrosequencing technology." [SO:ke]	2929145	SOFA	SOFA	sequence	4	SO	experimental_feature	pyrosequenced_read
SO:0000143	SO:0000149	\N	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0001424	"A read produced by pyrosequencing technology." [SO:ke]	1904704	SOFA	SOFA	sequence	3	SO	assembly_component	pyrosequenced_read
SO:0000148	SO:0000149	\N	"One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's." [SO:ls]	SO:0001424	"A read produced by pyrosequencing technology." [SO:ke]	1904705	SOFA	SOFA	sequence	3	SO	supercontig	pyrosequenced_read
SO:0000353	SO:0000149	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001424	"A read produced by pyrosequencing technology." [SO:ke]	1904706	SOFA	SOFA	sequence	3	SO	sequence_assembly	pyrosequenced_read
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001424	"A read produced by pyrosequencing technology." [SO:ke]	6469759	SOFA	SOFA	sequence	9	SO	region	pyrosequenced_read
SO:0000719	SO:0000148	\N	"An ordered and oriented set of scaffolds based on somewhat weaker sets of inferential evidence such as one set of mate pair reads together with supporting evidence from ESTs or location of markers from SNP or microsatellite maps, or cytogenetic localization of contained markers." [FB:WG]	SO:0001424	"A read produced by pyrosequencing technology." [SO:ke]	2929146	SOFA	SOFA	sequence	4	SO	ultracontig	pyrosequenced_read
SO:0001876	SO:0000148	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001424	"A read produced by pyrosequencing technology." [SO:ke]	2929147	SOFA	\N	sequence	4	SO	partial_genomic_sequence_assembly	pyrosequenced_read
SO:0001248	SO:0000353	\N	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0001424	"A read produced by pyrosequencing technology." [SO:ke]	5407476	SOFA	SOFA	sequence	7	SO	assembly	pyrosequenced_read
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001424	"A read produced by pyrosequencing technology." [SO:ke]	6778557	SOFA	SOFA	sequence	10	SO	sequence_feature	pyrosequenced_read
SO:0001876	SO:0000719	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001424	"A read produced by pyrosequencing technology." [SO:ke]	4002351	SOFA	\N	sequence	5	SO	partial_genomic_sequence_assembly	pyrosequenced_read
SO:0000353	SO:0001876	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001424	"A read produced by pyrosequencing technology." [SO:ke]	4966675	\N	SOFA	sequence	6	SO	sequence_assembly	pyrosequenced_read
SO:0001410	SO:0001248	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001424	"A read produced by pyrosequencing technology." [SO:ke]	5876449	SOFA	SOFA	sequence	8	SO	experimental_feature	pyrosequenced_read
SO:0001425	\N	\N	"A read produced by ligation based sequencing technologies." [SO:ke]	SO:0001425	"A read produced by ligation based sequencing technologies." [SO:ke]	46300	\N	\N	sequence	0	SO	ligation_based_read	ligation_based_read
SO:0000150	SO:0001425	\N	"A sequence obtained from a single sequencing experiment. Typically a read is produced when a base calling program interprets information from a chromatogram trace file produced from a sequencing machine." [SO:rd]	SO:0001425	"A read produced by ligation based sequencing technologies." [SO:ke]	491034	\N	SOFA	sequence	1	SO	read	ligation_based_read
SO:0000143	SO:0000150	\N	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0001425	"A read produced by ligation based sequencing technologies." [SO:ke]	1073605	SOFA	SOFA	sequence	2	SO	assembly_component	ligation_based_read
SO:0000149	SO:0000150	\N	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	SO:0001425	"A read produced by ligation based sequencing technologies." [SO:ke]	1073606	SOFA	SOFA	sequence	2	SO	contig	ligation_based_read
SO:0001410	SO:0000143	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001425	"A read produced by ligation based sequencing technologies." [SO:ke]	2929150	SOFA	SOFA	sequence	4	SO	experimental_feature	ligation_based_read
SO:0000143	SO:0000149	\N	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0001425	"A read produced by ligation based sequencing technologies." [SO:ke]	1904708	SOFA	SOFA	sequence	3	SO	assembly_component	ligation_based_read
SO:0000148	SO:0000149	\N	"One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's." [SO:ls]	SO:0001425	"A read produced by ligation based sequencing technologies." [SO:ke]	1904709	SOFA	SOFA	sequence	3	SO	supercontig	ligation_based_read
SO:0000353	SO:0000149	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001425	"A read produced by ligation based sequencing technologies." [SO:ke]	1904710	SOFA	SOFA	sequence	3	SO	sequence_assembly	ligation_based_read
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001425	"A read produced by ligation based sequencing technologies." [SO:ke]	6469760	SOFA	SOFA	sequence	9	SO	region	ligation_based_read
SO:0000719	SO:0000148	\N	"An ordered and oriented set of scaffolds based on somewhat weaker sets of inferential evidence such as one set of mate pair reads together with supporting evidence from ESTs or location of markers from SNP or microsatellite maps, or cytogenetic localization of contained markers." [FB:WG]	SO:0001425	"A read produced by ligation based sequencing technologies." [SO:ke]	2929151	SOFA	SOFA	sequence	4	SO	ultracontig	ligation_based_read
SO:0001876	SO:0000148	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001425	"A read produced by ligation based sequencing technologies." [SO:ke]	2929152	SOFA	\N	sequence	4	SO	partial_genomic_sequence_assembly	ligation_based_read
SO:0001248	SO:0000353	\N	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0001425	"A read produced by ligation based sequencing technologies." [SO:ke]	5407477	SOFA	SOFA	sequence	7	SO	assembly	ligation_based_read
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001425	"A read produced by ligation based sequencing technologies." [SO:ke]	6778558	SOFA	SOFA	sequence	10	SO	sequence_feature	ligation_based_read
SO:0001876	SO:0000719	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001425	"A read produced by ligation based sequencing technologies." [SO:ke]	4002355	SOFA	\N	sequence	5	SO	partial_genomic_sequence_assembly	ligation_based_read
SO:0000353	SO:0001876	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001425	"A read produced by ligation based sequencing technologies." [SO:ke]	4966678	\N	SOFA	sequence	6	SO	sequence_assembly	ligation_based_read
SO:0001410	SO:0001248	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001425	"A read produced by ligation based sequencing technologies." [SO:ke]	5876450	SOFA	SOFA	sequence	8	SO	experimental_feature	ligation_based_read
SO:0001426	\N	\N	"A read produced by the polymerase based sequence by synthesis method." [SO:ke]	SO:0001426	"A read produced by the polymerase based sequence by synthesis method." [SO:ke]	46301	\N	\N	sequence	0	SO	polymerase_synthesis_read	polymerase_synthesis_read
SO:0000150	SO:0001426	\N	"A sequence obtained from a single sequencing experiment. Typically a read is produced when a base calling program interprets information from a chromatogram trace file produced from a sequencing machine." [SO:rd]	SO:0001426	"A read produced by the polymerase based sequence by synthesis method." [SO:ke]	491035	\N	SOFA	sequence	1	SO	read	polymerase_synthesis_read
SO:0000143	SO:0000150	\N	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0001426	"A read produced by the polymerase based sequence by synthesis method." [SO:ke]	1073607	SOFA	SOFA	sequence	2	SO	assembly_component	polymerase_synthesis_read
SO:0000149	SO:0000150	\N	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	SO:0001426	"A read produced by the polymerase based sequence by synthesis method." [SO:ke]	1073608	SOFA	SOFA	sequence	2	SO	contig	polymerase_synthesis_read
SO:0001410	SO:0000143	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001426	"A read produced by the polymerase based sequence by synthesis method." [SO:ke]	2929155	SOFA	SOFA	sequence	4	SO	experimental_feature	polymerase_synthesis_read
SO:0000143	SO:0000149	\N	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0001426	"A read produced by the polymerase based sequence by synthesis method." [SO:ke]	1904712	SOFA	SOFA	sequence	3	SO	assembly_component	polymerase_synthesis_read
SO:0000148	SO:0000149	\N	"One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's." [SO:ls]	SO:0001426	"A read produced by the polymerase based sequence by synthesis method." [SO:ke]	1904713	SOFA	SOFA	sequence	3	SO	supercontig	polymerase_synthesis_read
SO:0000353	SO:0000149	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001426	"A read produced by the polymerase based sequence by synthesis method." [SO:ke]	1904714	SOFA	SOFA	sequence	3	SO	sequence_assembly	polymerase_synthesis_read
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001426	"A read produced by the polymerase based sequence by synthesis method." [SO:ke]	6469761	SOFA	SOFA	sequence	9	SO	region	polymerase_synthesis_read
SO:0000719	SO:0000148	\N	"An ordered and oriented set of scaffolds based on somewhat weaker sets of inferential evidence such as one set of mate pair reads together with supporting evidence from ESTs or location of markers from SNP or microsatellite maps, or cytogenetic localization of contained markers." [FB:WG]	SO:0001426	"A read produced by the polymerase based sequence by synthesis method." [SO:ke]	2929156	SOFA	SOFA	sequence	4	SO	ultracontig	polymerase_synthesis_read
SO:0001876	SO:0000148	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001426	"A read produced by the polymerase based sequence by synthesis method." [SO:ke]	2929157	SOFA	\N	sequence	4	SO	partial_genomic_sequence_assembly	polymerase_synthesis_read
SO:0001248	SO:0000353	\N	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0001426	"A read produced by the polymerase based sequence by synthesis method." [SO:ke]	5407478	SOFA	SOFA	sequence	7	SO	assembly	polymerase_synthesis_read
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001426	"A read produced by the polymerase based sequence by synthesis method." [SO:ke]	6778559	SOFA	SOFA	sequence	10	SO	sequence_feature	polymerase_synthesis_read
SO:0001876	SO:0000719	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001426	"A read produced by the polymerase based sequence by synthesis method." [SO:ke]	4002359	SOFA	\N	sequence	5	SO	partial_genomic_sequence_assembly	polymerase_synthesis_read
SO:0000353	SO:0001876	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001426	"A read produced by the polymerase based sequence by synthesis method." [SO:ke]	4966681	\N	SOFA	sequence	6	SO	sequence_assembly	polymerase_synthesis_read
SO:0001410	SO:0001248	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001426	"A read produced by the polymerase based sequence by synthesis method." [SO:ke]	5876451	SOFA	SOFA	sequence	8	SO	experimental_feature	polymerase_synthesis_read
SO:0001427	\N	\N	"A structural region in an RNA molecule which promotes ribosomal frameshifting of cis coding sequence." [RFAM:jd]	SO:0001427	"A structural region in an RNA molecule which promotes ribosomal frameshifting of cis coding sequence." [RFAM:jd]	46302	\N	\N	sequence	0	SO	cis_regulatory_frameshift_element	cis_regulatory_frameshift_element
SO:0001679	SO:0001427	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001427	"A structural region in an RNA molecule which promotes ribosomal frameshifting of cis coding sequence." [RFAM:jd]	491036	\N	SOFA	sequence	1	SO	transcription_regulatory_region	cis_regulatory_frameshift_element
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001427	"A structural region in an RNA molecule which promotes ribosomal frameshifting of cis coding sequence." [RFAM:jd]	1073609	SOFA	SOFA	sequence	2	SO	regulatory_region	cis_regulatory_frameshift_element
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001427	"A structural region in an RNA molecule which promotes ribosomal frameshifting of cis coding sequence." [RFAM:jd]	1904715	SOFA	SOFA	sequence	3	SO	gene_member_region	cis_regulatory_frameshift_element
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001427	"A structural region in an RNA molecule which promotes ribosomal frameshifting of cis coding sequence." [RFAM:jd]	2929159	SOFA	SOFA	sequence	4	SO	biological_region	cis_regulatory_frameshift_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001427	"A structural region in an RNA molecule which promotes ribosomal frameshifting of cis coding sequence." [RFAM:jd]	4002362	SOFA	SOFA	sequence	5	SO	region	cis_regulatory_frameshift_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001427	"A structural region in an RNA molecule which promotes ribosomal frameshifting of cis coding sequence." [RFAM:jd]	4966684	SOFA	SOFA	sequence	6	SO	sequence_feature	cis_regulatory_frameshift_element
SO:0001428	\N	\N	"A sequence assembly derived from expressed sequences." [SO:ke]	SO:0001428	"A sequence assembly derived from expressed sequences." [SO:ke]	46303	\N	\N	sequence	0	SO	expressed_sequence_assembly	expressed_sequence_assembly
SO:0000353	SO:0001428	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001428	"A sequence assembly derived from expressed sequences." [SO:ke]	491037	\N	SOFA	sequence	1	SO	sequence_assembly	expressed_sequence_assembly
SO:0001248	SO:0000353	\N	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0001428	"A sequence assembly derived from expressed sequences." [SO:ke]	1073610	SOFA	SOFA	sequence	2	SO	assembly	expressed_sequence_assembly
SO:0001410	SO:0001248	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001428	"A sequence assembly derived from expressed sequences." [SO:ke]	1904716	SOFA	SOFA	sequence	3	SO	experimental_feature	expressed_sequence_assembly
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001428	"A sequence assembly derived from expressed sequences." [SO:ke]	2929160	SOFA	SOFA	sequence	4	SO	region	expressed_sequence_assembly
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001428	"A sequence assembly derived from expressed sequences." [SO:ke]	4002363	SOFA	SOFA	sequence	5	SO	sequence_feature	expressed_sequence_assembly
SO:0001429	\N	\N	"A binding site that, in the molecule, interacts selectively and non-covalently with DNA." [SO:ke]	SO:0001429	"A binding site that, in the molecule, interacts selectively and non-covalently with DNA." [SO:ke]	46304	\N	\N	sequence	0	SO	DNA_binding_site	DNA_binding_site
SO:0001655	SO:0001429	\N	"A binding site that, in the molecule, interacts selectively and non-covalently with nucleotide residues." [SO:cb]	SO:0001429	"A binding site that, in the molecule, interacts selectively and non-covalently with DNA." [SO:ke]	491038	\N	\N	sequence	1	SO	nucleotide_binding_site	DNA_binding_site
SO:0000409	SO:0001655	\N	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0001429	"A binding site that, in the molecule, interacts selectively and non-covalently with DNA." [SO:ke]	1073611	\N	biosapiens,SOFA	sequence	2	SO	binding_site	DNA_binding_site
SO:0001411	SO:0000409	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001429	"A binding site that, in the molecule, interacts selectively and non-covalently with DNA." [SO:ke]	1904717	biosapiens,SOFA	SOFA	sequence	3	SO	biological_region	DNA_binding_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001429	"A binding site that, in the molecule, interacts selectively and non-covalently with DNA." [SO:ke]	2929161	SOFA	SOFA	sequence	4	SO	region	DNA_binding_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001429	"A binding site that, in the molecule, interacts selectively and non-covalently with DNA." [SO:ke]	4002364	SOFA	SOFA	sequence	5	SO	sequence_feature	DNA_binding_site
SO:0001431	\N	\N	"A gene that is not transcribed under normal conditions and is not critical to normal cellular functioning." [SO:ke]	SO:0001431	"A gene that is not transcribed under normal conditions and is not critical to normal cellular functioning." [SO:ke]	46305	\N	\N	sequence	0	SO	cryptic_gene	cryptic_gene
SO:0000704	SO:0001431	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0001431	"A gene that is not transcribed under normal conditions and is not critical to normal cellular functioning." [SO:ke]	491039	\N	SOFA	sequence	1	SO	gene	cryptic_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001431	"A gene that is not transcribed under normal conditions and is not critical to normal cellular functioning." [SO:ke]	1073612	SOFA	SOFA	sequence	2	SO	biological_region	cryptic_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001431	"A gene that is not transcribed under normal conditions and is not critical to normal cellular functioning." [SO:ke]	1904718	SOFA	SOFA	sequence	3	SO	region	cryptic_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001431	"A gene that is not transcribed under normal conditions and is not critical to normal cellular functioning." [SO:ke]	2929162	SOFA	SOFA	sequence	4	SO	sequence_feature	cryptic_gene
SO:0001433	\N	\N	"A three prime RACE (Rapid Amplification of cDNA Ends) clone is a cDNA clone copied from the 3' end of an mRNA (using a poly-dT primer to capture the polyA tail and a gene-specific or randomly primed 5' primer), and spliced into a vector for propagation in a suitable host." [modENCODE:nlw]	SO:0001433	"A three prime RACE (Rapid Amplification of cDNA Ends) clone is a cDNA clone copied from the 3' end of an mRNA (using a poly-dT primer to capture the polyA tail and a gene-specific or randomly primed 5' primer), and spliced into a vector for propagation in a suitable host." [modENCODE:nlw]	46306	\N	\N	sequence	0	SO	three_prime_RACE_clone	three_prime_RACE_clone
SO:0000317	SO:0001433	\N	"Complementary DNA; A piece of DNA copied from an mRNA and spliced into a vector for propagation in a suitable host." [http://seqcore.brcf.med.umich.edu/doc/educ/dnapr/mbglossary/mbgloss.html]	SO:0001433	"A three prime RACE (Rapid Amplification of cDNA Ends) clone is a cDNA clone copied from the 3' end of an mRNA (using a poly-dT primer to capture the polyA tail and a gene-specific or randomly primed 5' primer), and spliced into a vector for propagation in a suitable host." [modENCODE:nlw]	491040	\N	\N	sequence	1	SO	cDNA_clone	three_prime_RACE_clone
SO:0000151	SO:0000317	\N	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0001433	"A three prime RACE (Rapid Amplification of cDNA Ends) clone is a cDNA clone copied from the 3' end of an mRNA (using a poly-dT primer to capture the polyA tail and a gene-specific or randomly primed 5' primer), and spliced into a vector for propagation in a suitable host." [modENCODE:nlw]	1073613	\N	SOFA	sequence	2	SO	clone	three_prime_RACE_clone
SO:0000695	SO:0000151	\N	"A sequence used in experiment." [SO:ke]	SO:0001433	"A three prime RACE (Rapid Amplification of cDNA Ends) clone is a cDNA clone copied from the 3' end of an mRNA (using a poly-dT primer to capture the polyA tail and a gene-specific or randomly primed 5' primer), and spliced into a vector for propagation in a suitable host." [modENCODE:nlw]	1904719	SOFA	SOFA	sequence	3	SO	reagent	three_prime_RACE_clone
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001433	"A three prime RACE (Rapid Amplification of cDNA Ends) clone is a cDNA clone copied from the 3' end of an mRNA (using a poly-dT primer to capture the polyA tail and a gene-specific or randomly primed 5' primer), and spliced into a vector for propagation in a suitable host." [modENCODE:nlw]	2929163	SOFA	SOFA	sequence	4	SO	biomaterial_region	three_prime_RACE_clone
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001433	"A three prime RACE (Rapid Amplification of cDNA Ends) clone is a cDNA clone copied from the 3' end of an mRNA (using a poly-dT primer to capture the polyA tail and a gene-specific or randomly primed 5' primer), and spliced into a vector for propagation in a suitable host." [modENCODE:nlw]	4002365	SOFA	SOFA	sequence	5	SO	region	three_prime_RACE_clone
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001433	"A three prime RACE (Rapid Amplification of cDNA Ends) clone is a cDNA clone copied from the 3' end of an mRNA (using a poly-dT primer to capture the polyA tail and a gene-specific or randomly primed 5' primer), and spliced into a vector for propagation in a suitable host." [modENCODE:nlw]	4966685	SOFA	SOFA	sequence	6	SO	sequence_feature	three_prime_RACE_clone
SO:0001434	\N	\N	"A cassette pseudogene is a kind of gene in an inactive form which may recombine at a telomeric locus to form a functional copy." [SO:ke]	SO:0001434	"A cassette pseudogene is a kind of gene in an inactive form which may recombine at a telomeric locus to form a functional copy." [SO:ke]	46307	\N	\N	sequence	0	SO	cassette_pseudogene	cassette_pseudogene
SO:0001760	SO:0001434	\N	"A pseudogene that arose from a means other than retrotransposition. A pseudogene created via genomic duplication of a functional protein-coding parent gene followed by accumulation of deleterious mutations." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, SO:ke]	SO:0001434	"A cassette pseudogene is a kind of gene in an inactive form which may recombine at a telomeric locus to form a functional copy." [SO:ke]	491041	\N	\N	sequence	1	SO	non_processed_pseudogene	cassette_pseudogene
SO:0000336	SO:0001760	\N	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	SO:0001434	"A cassette pseudogene is a kind of gene in an inactive form which may recombine at a telomeric locus to form a functional copy." [SO:ke]	1073614	\N	SOFA	sequence	2	SO	pseudogene	cassette_pseudogene
SO:0001411	SO:0000336	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001434	"A cassette pseudogene is a kind of gene in an inactive form which may recombine at a telomeric locus to form a functional copy." [SO:ke]	1904720	SOFA	SOFA	sequence	3	SO	biological_region	cassette_pseudogene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001434	"A cassette pseudogene is a kind of gene in an inactive form which may recombine at a telomeric locus to form a functional copy." [SO:ke]	2929164	SOFA	SOFA	sequence	4	SO	region	cassette_pseudogene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001434	"A cassette pseudogene is a kind of gene in an inactive form which may recombine at a telomeric locus to form a functional copy." [SO:ke]	4002366	SOFA	SOFA	sequence	5	SO	sequence_feature	cassette_pseudogene
SO:0001435	\N	\N	"" []	SO:0001435	"" []	46308	\N	\N	sequence	0	SO	alanine	alanine
SO:0001237	SO:0001435	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001435	"" []	491042	\N	\N	sequence	1	SO	amino_acid	alanine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001435	"" []	1073615	\N	SOFA	sequence	2	SO	polypeptide	alanine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001435	"" []	1073616	\N	SOFA	sequence	2	SO	biological_region	alanine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001435	"" []	1904721	SOFA	SOFA	sequence	3	SO	biological_region	alanine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001435	"" []	2929165	SOFA	SOFA	sequence	4	SO	region	alanine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001435	"" []	3173976	SOFA	SOFA	sequence	5	SO	sequence_feature	alanine
SO:0001436	\N	\N	"" []	SO:0001436	"" []	46309	\N	\N	sequence	0	SO	valine	valine
SO:0001237	SO:0001436	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001436	"" []	491043	\N	\N	sequence	1	SO	amino_acid	valine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001436	"" []	1073617	\N	SOFA	sequence	2	SO	polypeptide	valine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001436	"" []	1073618	\N	SOFA	sequence	2	SO	biological_region	valine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001436	"" []	1904723	SOFA	SOFA	sequence	3	SO	biological_region	valine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001436	"" []	2929167	SOFA	SOFA	sequence	4	SO	region	valine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001436	"" []	3173977	SOFA	SOFA	sequence	5	SO	sequence_feature	valine
SO:0001437	\N	\N	"" []	SO:0001437	"" []	46310	\N	\N	sequence	0	SO	leucine	leucine
SO:0001237	SO:0001437	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001437	"" []	491044	\N	\N	sequence	1	SO	amino_acid	leucine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001437	"" []	1073619	\N	SOFA	sequence	2	SO	polypeptide	leucine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001437	"" []	1073620	\N	SOFA	sequence	2	SO	biological_region	leucine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001437	"" []	1904725	SOFA	SOFA	sequence	3	SO	biological_region	leucine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001437	"" []	2929169	SOFA	SOFA	sequence	4	SO	region	leucine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001437	"" []	3173978	SOFA	SOFA	sequence	5	SO	sequence_feature	leucine
SO:0001438	\N	\N	"" []	SO:0001438	"" []	46311	\N	\N	sequence	0	SO	isoleucine	isoleucine
SO:0001237	SO:0001438	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001438	"" []	491045	\N	\N	sequence	1	SO	amino_acid	isoleucine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001438	"" []	1073621	\N	SOFA	sequence	2	SO	polypeptide	isoleucine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001438	"" []	1073622	\N	SOFA	sequence	2	SO	biological_region	isoleucine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001438	"" []	1904727	SOFA	SOFA	sequence	3	SO	biological_region	isoleucine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001438	"" []	2929171	SOFA	SOFA	sequence	4	SO	region	isoleucine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001438	"" []	3173979	SOFA	SOFA	sequence	5	SO	sequence_feature	isoleucine
SO:0001439	\N	\N	"" []	SO:0001439	"" []	46312	\N	\N	sequence	0	SO	proline	proline
SO:0001237	SO:0001439	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001439	"" []	491046	\N	\N	sequence	1	SO	amino_acid	proline
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001439	"" []	1073623	\N	SOFA	sequence	2	SO	polypeptide	proline
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001439	"" []	1073624	\N	SOFA	sequence	2	SO	biological_region	proline
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001439	"" []	1904729	SOFA	SOFA	sequence	3	SO	biological_region	proline
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001439	"" []	2929173	SOFA	SOFA	sequence	4	SO	region	proline
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001439	"" []	3173980	SOFA	SOFA	sequence	5	SO	sequence_feature	proline
SO:0001440	\N	\N	"" []	SO:0001440	"" []	46313	\N	\N	sequence	0	SO	tryptophan	tryptophan
SO:0001237	SO:0001440	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001440	"" []	491047	\N	\N	sequence	1	SO	amino_acid	tryptophan
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001440	"" []	1073625	\N	SOFA	sequence	2	SO	polypeptide	tryptophan
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001440	"" []	1073626	\N	SOFA	sequence	2	SO	biological_region	tryptophan
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001440	"" []	1904731	SOFA	SOFA	sequence	3	SO	biological_region	tryptophan
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001440	"" []	2929175	SOFA	SOFA	sequence	4	SO	region	tryptophan
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001440	"" []	3173981	SOFA	SOFA	sequence	5	SO	sequence_feature	tryptophan
SO:0001441	\N	\N	"" []	SO:0001441	"" []	46314	\N	\N	sequence	0	SO	phenylalanine	phenylalanine
SO:0001237	SO:0001441	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001441	"" []	491048	\N	\N	sequence	1	SO	amino_acid	phenylalanine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001441	"" []	1073627	\N	SOFA	sequence	2	SO	polypeptide	phenylalanine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001441	"" []	1073628	\N	SOFA	sequence	2	SO	biological_region	phenylalanine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001441	"" []	1904733	SOFA	SOFA	sequence	3	SO	biological_region	phenylalanine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001441	"" []	2929177	SOFA	SOFA	sequence	4	SO	region	phenylalanine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001441	"" []	3173982	SOFA	SOFA	sequence	5	SO	sequence_feature	phenylalanine
SO:0001442	\N	\N	"" []	SO:0001442	"" []	46315	\N	\N	sequence	0	SO	methionine	methionine
SO:0001237	SO:0001442	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001442	"" []	491049	\N	\N	sequence	1	SO	amino_acid	methionine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001442	"" []	1073629	\N	SOFA	sequence	2	SO	polypeptide	methionine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001442	"" []	1073630	\N	SOFA	sequence	2	SO	biological_region	methionine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001442	"" []	1904735	SOFA	SOFA	sequence	3	SO	biological_region	methionine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001442	"" []	2929179	SOFA	SOFA	sequence	4	SO	region	methionine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001442	"" []	3173983	SOFA	SOFA	sequence	5	SO	sequence_feature	methionine
SO:0001443	\N	\N	"" []	SO:0001443	"" []	46316	\N	\N	sequence	0	SO	glycine	glycine
SO:0001237	SO:0001443	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001443	"" []	491050	\N	\N	sequence	1	SO	amino_acid	glycine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001443	"" []	1073631	\N	SOFA	sequence	2	SO	polypeptide	glycine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001443	"" []	1073632	\N	SOFA	sequence	2	SO	biological_region	glycine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001443	"" []	1904737	SOFA	SOFA	sequence	3	SO	biological_region	glycine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001443	"" []	2929181	SOFA	SOFA	sequence	4	SO	region	glycine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001443	"" []	3173984	SOFA	SOFA	sequence	5	SO	sequence_feature	glycine
SO:0001444	\N	\N	"" []	SO:0001444	"" []	46317	\N	\N	sequence	0	SO	serine	serine
SO:0001237	SO:0001444	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001444	"" []	491051	\N	\N	sequence	1	SO	amino_acid	serine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001444	"" []	1073633	\N	SOFA	sequence	2	SO	polypeptide	serine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001444	"" []	1073634	\N	SOFA	sequence	2	SO	biological_region	serine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001444	"" []	1904739	SOFA	SOFA	sequence	3	SO	biological_region	serine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001444	"" []	2929183	SOFA	SOFA	sequence	4	SO	region	serine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001444	"" []	3173985	SOFA	SOFA	sequence	5	SO	sequence_feature	serine
SO:0001445	\N	\N	"" []	SO:0001445	"" []	46318	\N	\N	sequence	0	SO	threonine	threonine
SO:0001237	SO:0001445	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001445	"" []	491052	\N	\N	sequence	1	SO	amino_acid	threonine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001445	"" []	1073635	\N	SOFA	sequence	2	SO	polypeptide	threonine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001445	"" []	1073636	\N	SOFA	sequence	2	SO	biological_region	threonine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001445	"" []	1904741	SOFA	SOFA	sequence	3	SO	biological_region	threonine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001445	"" []	2929185	SOFA	SOFA	sequence	4	SO	region	threonine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001445	"" []	3173986	SOFA	SOFA	sequence	5	SO	sequence_feature	threonine
SO:0001446	\N	\N	"" []	SO:0001446	"" []	46319	\N	\N	sequence	0	SO	tyrosine	tyrosine
SO:0001237	SO:0001446	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001446	"" []	491053	\N	\N	sequence	1	SO	amino_acid	tyrosine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001446	"" []	1073637	\N	SOFA	sequence	2	SO	polypeptide	tyrosine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001446	"" []	1073638	\N	SOFA	sequence	2	SO	biological_region	tyrosine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001446	"" []	1904743	SOFA	SOFA	sequence	3	SO	biological_region	tyrosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001446	"" []	2929187	SOFA	SOFA	sequence	4	SO	region	tyrosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001446	"" []	3173987	SOFA	SOFA	sequence	5	SO	sequence_feature	tyrosine
SO:0001447	\N	\N	"" []	SO:0001447	"" []	46320	\N	\N	sequence	0	SO	cysteine	cysteine
SO:0001237	SO:0001447	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001447	"" []	491054	\N	\N	sequence	1	SO	amino_acid	cysteine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001447	"" []	1073639	\N	SOFA	sequence	2	SO	polypeptide	cysteine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001447	"" []	1073640	\N	SOFA	sequence	2	SO	biological_region	cysteine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001447	"" []	1904745	SOFA	SOFA	sequence	3	SO	biological_region	cysteine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001447	"" []	2929189	SOFA	SOFA	sequence	4	SO	region	cysteine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001447	"" []	3173988	SOFA	SOFA	sequence	5	SO	sequence_feature	cysteine
SO:0001448	\N	\N	"" []	SO:0001448	"" []	46321	\N	\N	sequence	0	SO	glutamine	glutamine
SO:0001237	SO:0001448	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001448	"" []	491055	\N	\N	sequence	1	SO	amino_acid	glutamine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001448	"" []	1073641	\N	SOFA	sequence	2	SO	polypeptide	glutamine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001448	"" []	1073642	\N	SOFA	sequence	2	SO	biological_region	glutamine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001448	"" []	1904747	SOFA	SOFA	sequence	3	SO	biological_region	glutamine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001448	"" []	2929191	SOFA	SOFA	sequence	4	SO	region	glutamine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001448	"" []	3173989	SOFA	SOFA	sequence	5	SO	sequence_feature	glutamine
SO:0001449	\N	\N	"" []	SO:0001449	"" []	46322	\N	\N	sequence	0	SO	asparagine	asparagine
SO:0001237	SO:0001449	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001449	"" []	491056	\N	\N	sequence	1	SO	amino_acid	asparagine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001449	"" []	1073643	\N	SOFA	sequence	2	SO	polypeptide	asparagine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001449	"" []	1073644	\N	SOFA	sequence	2	SO	biological_region	asparagine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001449	"" []	1904749	SOFA	SOFA	sequence	3	SO	biological_region	asparagine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001449	"" []	2929193	SOFA	SOFA	sequence	4	SO	region	asparagine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001449	"" []	3173990	SOFA	SOFA	sequence	5	SO	sequence_feature	asparagine
SO:0001450	\N	\N	"" []	SO:0001450	"" []	46323	\N	\N	sequence	0	SO	lysine	lysine
SO:0001237	SO:0001450	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001450	"" []	491057	\N	\N	sequence	1	SO	amino_acid	lysine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001450	"" []	1073645	\N	SOFA	sequence	2	SO	polypeptide	lysine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001450	"" []	1073646	\N	SOFA	sequence	2	SO	biological_region	lysine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001450	"" []	1904751	SOFA	SOFA	sequence	3	SO	biological_region	lysine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001450	"" []	2929195	SOFA	SOFA	sequence	4	SO	region	lysine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001450	"" []	3173991	SOFA	SOFA	sequence	5	SO	sequence_feature	lysine
SO:0001451	\N	\N	"" []	SO:0001451	"" []	46324	\N	\N	sequence	0	SO	arginine	arginine
SO:0001237	SO:0001451	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001451	"" []	491058	\N	\N	sequence	1	SO	amino_acid	arginine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001451	"" []	1073647	\N	SOFA	sequence	2	SO	polypeptide	arginine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001451	"" []	1073648	\N	SOFA	sequence	2	SO	biological_region	arginine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001451	"" []	1904753	SOFA	SOFA	sequence	3	SO	biological_region	arginine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001451	"" []	2929197	SOFA	SOFA	sequence	4	SO	region	arginine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001451	"" []	3173992	SOFA	SOFA	sequence	5	SO	sequence_feature	arginine
SO:0001452	\N	\N	"" []	SO:0001452	"" []	46325	\N	\N	sequence	0	SO	histidine	histidine
SO:0001237	SO:0001452	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001452	"" []	491059	\N	\N	sequence	1	SO	amino_acid	histidine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001452	"" []	1073649	\N	SOFA	sequence	2	SO	polypeptide	histidine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001452	"" []	1073650	\N	SOFA	sequence	2	SO	biological_region	histidine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001452	"" []	1904755	SOFA	SOFA	sequence	3	SO	biological_region	histidine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001452	"" []	2929199	SOFA	SOFA	sequence	4	SO	region	histidine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001452	"" []	3173993	SOFA	SOFA	sequence	5	SO	sequence_feature	histidine
SO:0001453	\N	\N	"" []	SO:0001453	"" []	46326	\N	\N	sequence	0	SO	aspartic_acid	aspartic_acid
SO:0001237	SO:0001453	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001453	"" []	491060	\N	\N	sequence	1	SO	amino_acid	aspartic_acid
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001453	"" []	1073651	\N	SOFA	sequence	2	SO	polypeptide	aspartic_acid
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001453	"" []	1073652	\N	SOFA	sequence	2	SO	biological_region	aspartic_acid
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001453	"" []	1904757	SOFA	SOFA	sequence	3	SO	biological_region	aspartic_acid
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001453	"" []	2929201	SOFA	SOFA	sequence	4	SO	region	aspartic_acid
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001453	"" []	3173994	SOFA	SOFA	sequence	5	SO	sequence_feature	aspartic_acid
SO:0001454	\N	\N	"" []	SO:0001454	"" []	46327	\N	\N	sequence	0	SO	glutamic_acid	glutamic_acid
SO:0001237	SO:0001454	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001454	"" []	491061	\N	\N	sequence	1	SO	amino_acid	glutamic_acid
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001454	"" []	1073653	\N	SOFA	sequence	2	SO	polypeptide	glutamic_acid
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001454	"" []	1073654	\N	SOFA	sequence	2	SO	biological_region	glutamic_acid
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001454	"" []	1904759	SOFA	SOFA	sequence	3	SO	biological_region	glutamic_acid
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001454	"" []	2929203	SOFA	SOFA	sequence	4	SO	region	glutamic_acid
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001454	"" []	3173995	SOFA	SOFA	sequence	5	SO	sequence_feature	glutamic_acid
SO:0001455	\N	\N	"" []	SO:0001455	"" []	46328	\N	\N	sequence	0	SO	selenocysteine	selenocysteine
SO:0001237	SO:0001455	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001455	"" []	491062	\N	\N	sequence	1	SO	amino_acid	selenocysteine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001455	"" []	1073655	\N	SOFA	sequence	2	SO	polypeptide	selenocysteine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001455	"" []	1073656	\N	SOFA	sequence	2	SO	biological_region	selenocysteine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001455	"" []	1904761	SOFA	SOFA	sequence	3	SO	biological_region	selenocysteine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001455	"" []	2929205	SOFA	SOFA	sequence	4	SO	region	selenocysteine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001455	"" []	3173996	SOFA	SOFA	sequence	5	SO	sequence_feature	selenocysteine
SO:0001456	\N	\N	"" []	SO:0001456	"" []	46329	\N	\N	sequence	0	SO	pyrrolysine	pyrrolysine
SO:0001237	SO:0001456	\N	"A sequence feature that corresponds to a single amino acid residue in a polypeptide." [RSC:cb]	SO:0001456	"" []	491063	\N	\N	sequence	1	SO	amino_acid	pyrrolysine
SO:0000104	SO:0001237	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001456	"" []	1073657	\N	SOFA	sequence	2	SO	polypeptide	pyrrolysine
SO:0001411	SO:0001237	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001456	"" []	1073658	\N	SOFA	sequence	2	SO	biological_region	pyrrolysine
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001456	"" []	1904763	SOFA	SOFA	sequence	3	SO	biological_region	pyrrolysine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001456	"" []	2929207	SOFA	SOFA	sequence	4	SO	region	pyrrolysine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001456	"" []	3173997	SOFA	SOFA	sequence	5	SO	sequence_feature	pyrrolysine
SO:0001457	\N	\N	"A region defined by a set of transcribed sequences from the same gene or expressed pseudogene." [SO:ke]	SO:0001457	"A region defined by a set of transcribed sequences from the same gene or expressed pseudogene." [SO:ke]	46330	\N	\N	sequence	0	SO	transcribed_cluster	transcribed_cluster
SO:0001410	SO:0001457	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001457	"A region defined by a set of transcribed sequences from the same gene or expressed pseudogene." [SO:ke]	491064	\N	SOFA	sequence	1	SO	experimental_feature	transcribed_cluster
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001457	"A region defined by a set of transcribed sequences from the same gene or expressed pseudogene." [SO:ke]	1073659	SOFA	SOFA	sequence	2	SO	region	transcribed_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001457	"A region defined by a set of transcribed sequences from the same gene or expressed pseudogene." [SO:ke]	1904765	SOFA	SOFA	sequence	3	SO	sequence_feature	transcribed_cluster
SO:0001458	\N	\N	"A kind of transcribed_cluster defined by a set of transcribed sequences from the a unique gene." [SO:ke]	SO:0001458	"A kind of transcribed_cluster defined by a set of transcribed sequences from the a unique gene." [SO:ke]	46331	\N	\N	sequence	0	SO	unigene_cluster	unigene_cluster
SO:0001457	SO:0001458	\N	"A region defined by a set of transcribed sequences from the same gene or expressed pseudogene." [SO:ke]	SO:0001458	"A kind of transcribed_cluster defined by a set of transcribed sequences from the a unique gene." [SO:ke]	491065	\N	\N	sequence	1	SO	transcribed_cluster	unigene_cluster
SO:0001410	SO:0001457	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001458	"A kind of transcribed_cluster defined by a set of transcribed sequences from the a unique gene." [SO:ke]	1073660	\N	SOFA	sequence	2	SO	experimental_feature	unigene_cluster
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001458	"A kind of transcribed_cluster defined by a set of transcribed sequences from the a unique gene." [SO:ke]	1904766	SOFA	SOFA	sequence	3	SO	region	unigene_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001458	"A kind of transcribed_cluster defined by a set of transcribed sequences from the a unique gene." [SO:ke]	2929209	SOFA	SOFA	sequence	4	SO	sequence_feature	unigene_cluster
SO:0001459	\N	\N	"Clustered Palindromic Repeats interspersed with bacteriophage derived spacer sequences." [RFAM:jd]	SO:0001459	"Clustered Palindromic Repeats interspersed with bacteriophage derived spacer sequences." [RFAM:jd]	46332	\N	\N	sequence	0	SO	CRISPR	CRISPR
SO:0000314	SO:0001459	\N	"A repeat where the same sequence is repeated in the same direction. Example: GCTGA-followed by-GCTGA." [SO:ke]	SO:0001459	"Clustered Palindromic Repeats interspersed with bacteriophage derived spacer sequences." [RFAM:jd]	491066	\N	SOFA	sequence	1	SO	direct_repeat	CRISPR
SO:0000657	SO:0000314	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0001459	"Clustered Palindromic Repeats interspersed with bacteriophage derived spacer sequences." [RFAM:jd]	1073661	SOFA	SOFA	sequence	2	SO	repeat_region	CRISPR
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001459	"Clustered Palindromic Repeats interspersed with bacteriophage derived spacer sequences." [RFAM:jd]	1904767	SOFA	SOFA	sequence	3	SO	biological_region	CRISPR
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001459	"Clustered Palindromic Repeats interspersed with bacteriophage derived spacer sequences." [RFAM:jd]	2929210	SOFA	SOFA	sequence	4	SO	region	CRISPR
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001459	"Clustered Palindromic Repeats interspersed with bacteriophage derived spacer sequences." [RFAM:jd]	4002367	SOFA	SOFA	sequence	5	SO	sequence_feature	CRISPR
SO:0001460	\N	\N	"A binding site that, in an insulator region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	SO:0001460	"A binding site that, in an insulator region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	46333	\N	\N	sequence	0	SO	insulator_binding_site	insulator_binding_site
SO:0000627	SO:0001460	\N	"A transcriptional cis regulatory region that when located between a CM and a gene's promoter prevents the CRM from modulating that genes expression." [SO:regcreative]	SO:0001460	"A binding site that, in an insulator region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	491067	\N	SOFA	sequence	1	SO	insulator	insulator_binding_site
SO:0001654	SO:0001460	\N	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	SO:0001460	"A binding site that, in an insulator region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	491068	\N	SOFA	sequence	1	SO	nucleotide_to_protein_binding_site	insulator_binding_site
SO:0001055	SO:0000627	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001460	"A binding site that, in an insulator region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	1073662	SOFA	SOFA	sequence	2	SO	transcriptional_cis_regulatory_region	insulator_binding_site
SO:0000410	SO:0001654	\N	"A binding site that, in the molecule, interacts selectively and non-covalently with polypeptide molecules." [SO:ke]	SO:0001460	"A binding site that, in an insulator region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	1073663	SOFA	SOFA	sequence	2	SO	protein_binding_site	insulator_binding_site
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001460	"A binding site that, in an insulator region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	1904768	SOFA	SOFA	sequence	3	SO	transcription_regulatory_region	insulator_binding_site
SO:0000409	SO:0000410	\N	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0001460	"A binding site that, in an insulator region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	1904769	SOFA	biosapiens,SOFA	sequence	3	SO	binding_site	insulator_binding_site
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001460	"A binding site that, in an insulator region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	2929211	SOFA	SOFA	sequence	4	SO	regulatory_region	insulator_binding_site
SO:0001411	SO:0000409	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001460	"A binding site that, in an insulator region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	2929212	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	insulator_binding_site
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001460	"A binding site that, in an insulator region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	4002368	SOFA	SOFA	sequence	5	SO	gene_member_region	insulator_binding_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001460	"A binding site that, in an insulator region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	5741322	SOFA	SOFA	sequence	7	SO	region	insulator_binding_site
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001460	"A binding site that, in an insulator region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	4966686	SOFA	SOFA	sequence	6	SO	biological_region	insulator_binding_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001460	"A binding site that, in an insulator region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	5996441	SOFA	SOFA	sequence	8	SO	sequence_feature	insulator_binding_site
SO:0001461	\N	\N	"A binding site that, in the enhancer region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	SO:0001461	"A binding site that, in the enhancer region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	46334	\N	\N	sequence	0	SO	enhancer_binding_site	enhancer_binding_site
SO:0000165	SO:0001461	\N	"A cis-acting sequence that increases the utilization of (some) eukaryotic promoters, and can function in either orientation and in any location (upstream or downstream) relative to the promoter." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001461	"A binding site that, in the enhancer region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	491069	\N	SOFA	sequence	1	SO	enhancer	enhancer_binding_site
SO:0001654	SO:0001461	\N	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	SO:0001461	"A binding site that, in the enhancer region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	491070	\N	SOFA	sequence	1	SO	nucleotide_to_protein_binding_site	enhancer_binding_site
SO:0000727	SO:0000165	\N	"A regulatory region where transcription factor binding sites clustered to regulate various aspects of transcription activities. (CRMs can be located a few kb to hundred kb upstream of the basal promoter, in the coding sequence, within introns, or in the downstream 3'UTR sequences, as well as on different chromosome). A single gene can be regulated by multiple CRMs to give precise control of its spatial and temporal expression. CRMs function as nodes in large, intertwined regulatory network." [PMID:19660565, SO:SG]	SO:0001461	"A binding site that, in the enhancer region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	1073664	SOFA	SOFA	sequence	2	SO	CRM	enhancer_binding_site
SO:0000410	SO:0001654	\N	"A binding site that, in the molecule, interacts selectively and non-covalently with polypeptide molecules." [SO:ke]	SO:0001461	"A binding site that, in the enhancer region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	1073665	SOFA	SOFA	sequence	2	SO	protein_binding_site	enhancer_binding_site
SO:0001055	SO:0000727	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001461	"A binding site that, in the enhancer region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	1904770	SOFA	SOFA	sequence	3	SO	transcriptional_cis_regulatory_region	enhancer_binding_site
SO:0000409	SO:0000410	\N	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0001461	"A binding site that, in the enhancer region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	1904771	SOFA	biosapiens,SOFA	sequence	3	SO	binding_site	enhancer_binding_site
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001461	"A binding site that, in the enhancer region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	2929213	SOFA	SOFA	sequence	4	SO	transcription_regulatory_region	enhancer_binding_site
SO:0001411	SO:0000409	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001461	"A binding site that, in the enhancer region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	2929214	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	enhancer_binding_site
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001461	"A binding site that, in the enhancer region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	4002370	SOFA	SOFA	sequence	5	SO	regulatory_region	enhancer_binding_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001461	"A binding site that, in the enhancer region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	6311110	SOFA	SOFA	sequence	8	SO	region	enhancer_binding_site
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001461	"A binding site that, in the enhancer region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	4966688	SOFA	SOFA	sequence	6	SO	gene_member_region	enhancer_binding_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001461	"A binding site that, in the enhancer region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	6469762	SOFA	SOFA	sequence	9	SO	sequence_feature	enhancer_binding_site
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001461	"A binding site that, in the enhancer region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	5741323	SOFA	SOFA	sequence	7	SO	biological_region	enhancer_binding_site
SO:0001462	\N	\N	"A collection of contigs." [SO:ke]	SO:0001462	"A collection of contigs." [SO:ke]	46335	\N	\N	sequence	0	SO	contig_collection	contig_collection
SO:0001085	SO:0001462	\N	"Different sources report differing sequences." [EBIBS:GAR, UniProt:curation_manual]	SO:0001462	"A collection of contigs." [SO:ke]	491071	\N	biosapiens	sequence	1	SO	sequence_conflict	contig_collection
SO:0001260	SO:0001462	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0001462	"A collection of contigs." [SO:ke]	491072	\N	\N	sequence	1	SO	sequence_collection	contig_collection
SO:0001082	SO:0001085	\N	"Incompatibility in the sequence due to some experimental problem." [EBIBS:GAR]	SO:0001462	"A collection of contigs." [SO:ke]	1073666	biosapiens	biosapiens	sequence	2	SO	polypeptide_sequencing_information	contig_collection
SO:0000700	SO:0001082	\N	"A comment about the sequence." [SO:ke]	SO:0001462	"A collection of contigs." [SO:ke]	1904772	biosapiens	SOFA	sequence	3	SO	remark	contig_collection
SO:0001410	SO:0000700	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001462	"A collection of contigs." [SO:ke]	2929215	SOFA	SOFA	sequence	4	SO	experimental_feature	contig_collection
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001462	"A collection of contigs." [SO:ke]	4002372	SOFA	SOFA	sequence	5	SO	region	contig_collection
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001462	"A collection of contigs." [SO:ke]	4966690	SOFA	SOFA	sequence	6	SO	sequence_feature	contig_collection
SO:0001463	\N	\N	"Long, intervening non-coding RNA. A transcript that does not overlap within the start or end genomic coordinates of a coding gene or pseudogene on either strand." [http://www.gencodegenes.org/gencode_biotypes.html, PMID:19182780, PMID:23463798, SO:ke]	SO:0001463	"Long, intervening non-coding RNA. A transcript that does not overlap within the start or end genomic coordinates of a coding gene or pseudogene on either strand." [http://www.gencodegenes.org/gencode_biotypes.html, PMID:19182780, PMID:23463798, SO:ke]	46336	\N	\N	sequence	0	SO	lincRNA	lincRNA
SO:0001877	SO:0001463	\N	"A non-coding RNA over 200nucleotides in length." [HGNC:mw]	SO:0001463	"Long, intervening non-coding RNA. A transcript that does not overlap within the start or end genomic coordinates of a coding gene or pseudogene on either strand." [http://www.gencodegenes.org/gencode_biotypes.html, PMID:19182780, PMID:23463798, SO:ke]	491073	\N	\N	sequence	1	SO	lnc_RNA	lincRNA
SO:0000655	SO:0001877	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0001463	"Long, intervening non-coding RNA. A transcript that does not overlap within the start or end genomic coordinates of a coding gene or pseudogene on either strand." [http://www.gencodegenes.org/gencode_biotypes.html, PMID:19182780, PMID:23463798, SO:ke]	1073667	\N	SOFA	sequence	2	SO	ncRNA	lincRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001463	"Long, intervening non-coding RNA. A transcript that does not overlap within the start or end genomic coordinates of a coding gene or pseudogene on either strand." [http://www.gencodegenes.org/gencode_biotypes.html, PMID:19182780, PMID:23463798, SO:ke]	1904773	SOFA	SOFA	sequence	3	SO	mature_transcript	lincRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001463	"Long, intervening non-coding RNA. A transcript that does not overlap within the start or end genomic coordinates of a coding gene or pseudogene on either strand." [http://www.gencodegenes.org/gencode_biotypes.html, PMID:19182780, PMID:23463798, SO:ke]	2929216	SOFA	SOFA	sequence	4	SO	transcript	lincRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001463	"Long, intervening non-coding RNA. A transcript that does not overlap within the start or end genomic coordinates of a coding gene or pseudogene on either strand." [http://www.gencodegenes.org/gencode_biotypes.html, PMID:19182780, PMID:23463798, SO:ke]	4002373	SOFA	SOFA	sequence	5	SO	gene_member_region	lincRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001463	"Long, intervening non-coding RNA. A transcript that does not overlap within the start or end genomic coordinates of a coding gene or pseudogene on either strand." [http://www.gencodegenes.org/gencode_biotypes.html, PMID:19182780, PMID:23463798, SO:ke]	4966691	SOFA	SOFA	sequence	6	SO	biological_region	lincRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001463	"Long, intervening non-coding RNA. A transcript that does not overlap within the start or end genomic coordinates of a coding gene or pseudogene on either strand." [http://www.gencodegenes.org/gencode_biotypes.html, PMID:19182780, PMID:23463798, SO:ke]	5741324	SOFA	SOFA	sequence	7	SO	region	lincRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001463	"Long, intervening non-coding RNA. A transcript that does not overlap within the start or end genomic coordinates of a coding gene or pseudogene on either strand." [http://www.gencodegenes.org/gencode_biotypes.html, PMID:19182780, PMID:23463798, SO:ke]	6311111	SOFA	SOFA	sequence	8	SO	sequence_feature	lincRNA
SO:0001464	\N	\N	"An EST spanning part or all of the untranslated regions of a protein-coding transcript." [SO:nlw]	SO:0001464	"An EST spanning part or all of the untranslated regions of a protein-coding transcript." [SO:nlw]	46337	\N	\N	sequence	0	SO	UST	UST
SO:0000345	SO:0001464	\N	"A tag produced from a single sequencing read from a cDNA clone or PCR product; typically a few hundred base pairs long." [SO:ke]	SO:0001464	"An EST spanning part or all of the untranslated regions of a protein-coding transcript." [SO:nlw]	491074	\N	SOFA	sequence	1	SO	EST	UST
SO:0000324	SO:0000345	\N	"A nucleotide sequence that may be used to identify a larger sequence." [SO:ke]	SO:0001464	"An EST spanning part or all of the untranslated regions of a protein-coding transcript." [SO:nlw]	1073668	SOFA	SOFA	sequence	2	SO	tag	UST
SO:0000696	SO:0000324	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0001464	"An EST spanning part or all of the untranslated regions of a protein-coding transcript." [SO:nlw]	1904774	SOFA	SOFA	sequence	3	SO	oligo	UST
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0001464	"An EST spanning part or all of the untranslated regions of a protein-coding transcript." [SO:nlw]	2929217	SOFA	SOFA	sequence	4	SO	reagent	UST
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001464	"An EST spanning part or all of the untranslated regions of a protein-coding transcript." [SO:nlw]	4002374	SOFA	SOFA	sequence	5	SO	biomaterial_region	UST
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001464	"An EST spanning part or all of the untranslated regions of a protein-coding transcript." [SO:nlw]	4966692	SOFA	SOFA	sequence	6	SO	region	UST
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001464	"An EST spanning part or all of the untranslated regions of a protein-coding transcript." [SO:nlw]	5741325	SOFA	SOFA	sequence	7	SO	sequence_feature	UST
SO:0001465	\N	\N	"A UST located in the 3'UTR of a protein-coding transcript." [SO:nlw]	SO:0001465	"A UST located in the 3'UTR of a protein-coding transcript." [SO:nlw]	46338	\N	\N	sequence	0	SO	three_prime_UST	three_prime_UST
SO:0001464	SO:0001465	\N	"An EST spanning part or all of the untranslated regions of a protein-coding transcript." [SO:nlw]	SO:0001465	"A UST located in the 3'UTR of a protein-coding transcript." [SO:nlw]	491075	\N	\N	sequence	1	SO	UST	three_prime_UST
SO:0000345	SO:0001464	\N	"A tag produced from a single sequencing read from a cDNA clone or PCR product; typically a few hundred base pairs long." [SO:ke]	SO:0001465	"A UST located in the 3'UTR of a protein-coding transcript." [SO:nlw]	1073669	\N	SOFA	sequence	2	SO	EST	three_prime_UST
SO:0000324	SO:0000345	\N	"A nucleotide sequence that may be used to identify a larger sequence." [SO:ke]	SO:0001465	"A UST located in the 3'UTR of a protein-coding transcript." [SO:nlw]	1904775	SOFA	SOFA	sequence	3	SO	tag	three_prime_UST
SO:0000696	SO:0000324	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0001465	"A UST located in the 3'UTR of a protein-coding transcript." [SO:nlw]	2929218	SOFA	SOFA	sequence	4	SO	oligo	three_prime_UST
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0001465	"A UST located in the 3'UTR of a protein-coding transcript." [SO:nlw]	4002375	SOFA	SOFA	sequence	5	SO	reagent	three_prime_UST
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001465	"A UST located in the 3'UTR of a protein-coding transcript." [SO:nlw]	4966693	SOFA	SOFA	sequence	6	SO	biomaterial_region	three_prime_UST
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001465	"A UST located in the 3'UTR of a protein-coding transcript." [SO:nlw]	5741326	SOFA	SOFA	sequence	7	SO	region	three_prime_UST
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001465	"A UST located in the 3'UTR of a protein-coding transcript." [SO:nlw]	6311112	SOFA	SOFA	sequence	8	SO	sequence_feature	three_prime_UST
SO:0001466	\N	\N	"An UST located in the 5'UTR of a protein-coding transcript." [SO:nlw]	SO:0001466	"An UST located in the 5'UTR of a protein-coding transcript." [SO:nlw]	46339	\N	\N	sequence	0	SO	five_prime_UST	five_prime_UST
SO:0001464	SO:0001466	\N	"An EST spanning part or all of the untranslated regions of a protein-coding transcript." [SO:nlw]	SO:0001466	"An UST located in the 5'UTR of a protein-coding transcript." [SO:nlw]	491076	\N	\N	sequence	1	SO	UST	five_prime_UST
SO:0000345	SO:0001464	\N	"A tag produced from a single sequencing read from a cDNA clone or PCR product; typically a few hundred base pairs long." [SO:ke]	SO:0001466	"An UST located in the 5'UTR of a protein-coding transcript." [SO:nlw]	1073670	\N	SOFA	sequence	2	SO	EST	five_prime_UST
SO:0000324	SO:0000345	\N	"A nucleotide sequence that may be used to identify a larger sequence." [SO:ke]	SO:0001466	"An UST located in the 5'UTR of a protein-coding transcript." [SO:nlw]	1904776	SOFA	SOFA	sequence	3	SO	tag	five_prime_UST
SO:0000696	SO:0000324	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0001466	"An UST located in the 5'UTR of a protein-coding transcript." [SO:nlw]	2929219	SOFA	SOFA	sequence	4	SO	oligo	five_prime_UST
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0001466	"An UST located in the 5'UTR of a protein-coding transcript." [SO:nlw]	4002376	SOFA	SOFA	sequence	5	SO	reagent	five_prime_UST
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001466	"An UST located in the 5'UTR of a protein-coding transcript." [SO:nlw]	4966694	SOFA	SOFA	sequence	6	SO	biomaterial_region	five_prime_UST
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001466	"An UST located in the 5'UTR of a protein-coding transcript." [SO:nlw]	5741327	SOFA	SOFA	sequence	7	SO	region	five_prime_UST
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001466	"An UST located in the 5'UTR of a protein-coding transcript." [SO:nlw]	6311113	SOFA	SOFA	sequence	8	SO	sequence_feature	five_prime_UST
SO:0001467	\N	\N	"A tag produced from a single sequencing read from a RACE product; typically a few hundred base pairs long." [SO:nlw]	SO:0001467	"A tag produced from a single sequencing read from a RACE product; typically a few hundred base pairs long." [SO:nlw]	46340	\N	\N	sequence	0	SO	RST	RST
SO:0000345	SO:0001467	\N	"A tag produced from a single sequencing read from a cDNA clone or PCR product; typically a few hundred base pairs long." [SO:ke]	SO:0001467	"A tag produced from a single sequencing read from a RACE product; typically a few hundred base pairs long." [SO:nlw]	491077	\N	SOFA	sequence	1	SO	EST	RST
SO:0000324	SO:0000345	\N	"A nucleotide sequence that may be used to identify a larger sequence." [SO:ke]	SO:0001467	"A tag produced from a single sequencing read from a RACE product; typically a few hundred base pairs long." [SO:nlw]	1073671	SOFA	SOFA	sequence	2	SO	tag	RST
SO:0000696	SO:0000324	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0001467	"A tag produced from a single sequencing read from a RACE product; typically a few hundred base pairs long." [SO:nlw]	1904777	SOFA	SOFA	sequence	3	SO	oligo	RST
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0001467	"A tag produced from a single sequencing read from a RACE product; typically a few hundred base pairs long." [SO:nlw]	2929220	SOFA	SOFA	sequence	4	SO	reagent	RST
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001467	"A tag produced from a single sequencing read from a RACE product; typically a few hundred base pairs long." [SO:nlw]	4002377	SOFA	SOFA	sequence	5	SO	biomaterial_region	RST
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001467	"A tag produced from a single sequencing read from a RACE product; typically a few hundred base pairs long." [SO:nlw]	4966695	SOFA	SOFA	sequence	6	SO	region	RST
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001467	"A tag produced from a single sequencing read from a RACE product; typically a few hundred base pairs long." [SO:nlw]	5741328	SOFA	SOFA	sequence	7	SO	sequence_feature	RST
SO:0001468	\N	\N	"A tag produced from a single sequencing read from a 3'-RACE product; typically a few hundred base pairs long." [SO:nlw]	SO:0001468	"A tag produced from a single sequencing read from a 3'-RACE product; typically a few hundred base pairs long." [SO:nlw]	46341	\N	\N	sequence	0	SO	three_prime_RST	three_prime_RST
SO:0001467	SO:0001468	\N	"A tag produced from a single sequencing read from a RACE product; typically a few hundred base pairs long." [SO:nlw]	SO:0001468	"A tag produced from a single sequencing read from a 3'-RACE product; typically a few hundred base pairs long." [SO:nlw]	491078	\N	\N	sequence	1	SO	RST	three_prime_RST
SO:0000345	SO:0001467	\N	"A tag produced from a single sequencing read from a cDNA clone or PCR product; typically a few hundred base pairs long." [SO:ke]	SO:0001468	"A tag produced from a single sequencing read from a 3'-RACE product; typically a few hundred base pairs long." [SO:nlw]	1073672	\N	SOFA	sequence	2	SO	EST	three_prime_RST
SO:0000324	SO:0000345	\N	"A nucleotide sequence that may be used to identify a larger sequence." [SO:ke]	SO:0001468	"A tag produced from a single sequencing read from a 3'-RACE product; typically a few hundred base pairs long." [SO:nlw]	1904778	SOFA	SOFA	sequence	3	SO	tag	three_prime_RST
SO:0000696	SO:0000324	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0001468	"A tag produced from a single sequencing read from a 3'-RACE product; typically a few hundred base pairs long." [SO:nlw]	2929221	SOFA	SOFA	sequence	4	SO	oligo	three_prime_RST
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0001468	"A tag produced from a single sequencing read from a 3'-RACE product; typically a few hundred base pairs long." [SO:nlw]	4002378	SOFA	SOFA	sequence	5	SO	reagent	three_prime_RST
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001468	"A tag produced from a single sequencing read from a 3'-RACE product; typically a few hundred base pairs long." [SO:nlw]	4966696	SOFA	SOFA	sequence	6	SO	biomaterial_region	three_prime_RST
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001468	"A tag produced from a single sequencing read from a 3'-RACE product; typically a few hundred base pairs long." [SO:nlw]	5741329	SOFA	SOFA	sequence	7	SO	region	three_prime_RST
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001468	"A tag produced from a single sequencing read from a 3'-RACE product; typically a few hundred base pairs long." [SO:nlw]	6311114	SOFA	SOFA	sequence	8	SO	sequence_feature	three_prime_RST
SO:0001469	\N	\N	"A tag produced from a single sequencing read from a 5'-RACE product; typically a few hundred base pairs long." [SO:nlw]	SO:0001469	"A tag produced from a single sequencing read from a 5'-RACE product; typically a few hundred base pairs long." [SO:nlw]	46342	\N	\N	sequence	0	SO	five_prime_RST	five_prime_RST
SO:0001467	SO:0001469	\N	"A tag produced from a single sequencing read from a RACE product; typically a few hundred base pairs long." [SO:nlw]	SO:0001469	"A tag produced from a single sequencing read from a 5'-RACE product; typically a few hundred base pairs long." [SO:nlw]	491079	\N	\N	sequence	1	SO	RST	five_prime_RST
SO:0000345	SO:0001467	\N	"A tag produced from a single sequencing read from a cDNA clone or PCR product; typically a few hundred base pairs long." [SO:ke]	SO:0001469	"A tag produced from a single sequencing read from a 5'-RACE product; typically a few hundred base pairs long." [SO:nlw]	1073673	\N	SOFA	sequence	2	SO	EST	five_prime_RST
SO:0000324	SO:0000345	\N	"A nucleotide sequence that may be used to identify a larger sequence." [SO:ke]	SO:0001469	"A tag produced from a single sequencing read from a 5'-RACE product; typically a few hundred base pairs long." [SO:nlw]	1904779	SOFA	SOFA	sequence	3	SO	tag	five_prime_RST
SO:0000696	SO:0000324	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0001469	"A tag produced from a single sequencing read from a 5'-RACE product; typically a few hundred base pairs long." [SO:nlw]	2929222	SOFA	SOFA	sequence	4	SO	oligo	five_prime_RST
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0001469	"A tag produced from a single sequencing read from a 5'-RACE product; typically a few hundred base pairs long." [SO:nlw]	4002379	SOFA	SOFA	sequence	5	SO	reagent	five_prime_RST
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001469	"A tag produced from a single sequencing read from a 5'-RACE product; typically a few hundred base pairs long." [SO:nlw]	4966697	SOFA	SOFA	sequence	6	SO	biomaterial_region	five_prime_RST
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001469	"A tag produced from a single sequencing read from a 5'-RACE product; typically a few hundred base pairs long." [SO:nlw]	5741330	SOFA	SOFA	sequence	7	SO	region	five_prime_RST
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001469	"A tag produced from a single sequencing read from a 5'-RACE product; typically a few hundred base pairs long." [SO:nlw]	6311115	SOFA	SOFA	sequence	8	SO	sequence_feature	five_prime_RST
SO:0001470	\N	\N	"A match against an UST sequence." [SO:nlw]	SO:0001470	"A match against an UST sequence." [SO:nlw]	46343	\N	\N	sequence	0	SO	UST_match	UST_match
SO:0000102	SO:0001470	\N	"A match to an EST or cDNA sequence." [SO:ke]	SO:0001470	"A match against an UST sequence." [SO:nlw]	491080	\N	SOFA	sequence	1	SO	expressed_sequence_match	UST_match
SO:0000347	SO:0000102	\N	"A match against a nucleotide sequence." [SO:ke]	SO:0001470	"A match against an UST sequence." [SO:nlw]	1073674	SOFA	SOFA	sequence	2	SO	nucleotide_match	UST_match
SO:0000343	SO:0000347	\N	"A region of sequence, aligned to another sequence with some statistical significance, using an algorithm such as BLAST or SIM4." [SO:ke]	SO:0001470	"A match against an UST sequence." [SO:nlw]	1904780	SOFA	SOFA	sequence	3	SO	match	UST_match
SO:0001410	SO:0000343	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001470	"A match against an UST sequence." [SO:nlw]	2929223	SOFA	SOFA	sequence	4	SO	experimental_feature	UST_match
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001470	"A match against an UST sequence." [SO:nlw]	4002380	SOFA	SOFA	sequence	5	SO	region	UST_match
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001470	"A match against an UST sequence." [SO:nlw]	4966698	SOFA	SOFA	sequence	6	SO	sequence_feature	UST_match
SO:0001471	\N	\N	"A match against an RST sequence." [SO:nlw]	SO:0001471	"A match against an RST sequence." [SO:nlw]	46344	\N	\N	sequence	0	SO	RST_match	RST_match
SO:0000102	SO:0001471	\N	"A match to an EST or cDNA sequence." [SO:ke]	SO:0001471	"A match against an RST sequence." [SO:nlw]	491081	\N	SOFA	sequence	1	SO	expressed_sequence_match	RST_match
SO:0000347	SO:0000102	\N	"A match against a nucleotide sequence." [SO:ke]	SO:0001471	"A match against an RST sequence." [SO:nlw]	1073675	SOFA	SOFA	sequence	2	SO	nucleotide_match	RST_match
SO:0000343	SO:0000347	\N	"A region of sequence, aligned to another sequence with some statistical significance, using an algorithm such as BLAST or SIM4." [SO:ke]	SO:0001471	"A match against an RST sequence." [SO:nlw]	1904781	SOFA	SOFA	sequence	3	SO	match	RST_match
SO:0001410	SO:0000343	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001471	"A match against an RST sequence." [SO:nlw]	2929224	SOFA	SOFA	sequence	4	SO	experimental_feature	RST_match
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001471	"A match against an RST sequence." [SO:nlw]	4002381	SOFA	SOFA	sequence	5	SO	region	RST_match
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001471	"A match against an RST sequence." [SO:nlw]	4966699	SOFA	SOFA	sequence	6	SO	sequence_feature	RST_match
SO:0001472	\N	\N	"A nucleotide match to a primer sequence." [SO:nlw]	SO:0001472	"A nucleotide match to a primer sequence." [SO:nlw]	46345	\N	\N	sequence	0	SO	primer_match	primer_match
SO:0000347	SO:0001472	\N	"A match against a nucleotide sequence." [SO:ke]	SO:0001472	"A nucleotide match to a primer sequence." [SO:nlw]	491082	\N	SOFA	sequence	1	SO	nucleotide_match	primer_match
SO:0000343	SO:0000347	\N	"A region of sequence, aligned to another sequence with some statistical significance, using an algorithm such as BLAST or SIM4." [SO:ke]	SO:0001472	"A nucleotide match to a primer sequence." [SO:nlw]	1073676	SOFA	SOFA	sequence	2	SO	match	primer_match
SO:0001410	SO:0000343	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001472	"A nucleotide match to a primer sequence." [SO:nlw]	1904782	SOFA	SOFA	sequence	3	SO	experimental_feature	primer_match
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001472	"A nucleotide match to a primer sequence." [SO:nlw]	2929225	SOFA	SOFA	sequence	4	SO	region	primer_match
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001472	"A nucleotide match to a primer sequence." [SO:nlw]	4002382	SOFA	SOFA	sequence	5	SO	sequence_feature	primer_match
SO:0001473	\N	\N	"A region of the pri miRNA that base pairs with the guide to form the hairpin." [SO:ke]	SO:0001473	"A region of the pri miRNA that base pairs with the guide to form the hairpin." [SO:ke]	46346	\N	\N	sequence	0	SO	miRNA_antiguide	miRNA_antiguide
SO:0001243	SO:0001473	\N	"A part of an miRNA primary_transcript." [SO:ke]	SO:0001473	"A region of the pri miRNA that base pairs with the guide to form the hairpin." [SO:ke]	491083	\N	\N	sequence	1	SO	miRNA_primary_transcript_region	miRNA_antiguide
SO:0000835	SO:0001243	\N	"A part of a primary transcript." [SO:ke]	SO:0001473	"A region of the pri miRNA that base pairs with the guide to form the hairpin." [SO:ke]	1073677	\N	SOFA	sequence	2	SO	primary_transcript_region	miRNA_antiguide
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001473	"A region of the pri miRNA that base pairs with the guide to form the hairpin." [SO:ke]	1904783	SOFA	SOFA	sequence	3	SO	primary_transcript	miRNA_antiguide
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0001473	"A region of the pri miRNA that base pairs with the guide to form the hairpin." [SO:ke]	1904784	SOFA	SOFA	sequence	3	SO	transcript_region	miRNA_antiguide
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001473	"A region of the pri miRNA that base pairs with the guide to form the hairpin." [SO:ke]	2929226	SOFA	SOFA	sequence	4	SO	transcript	miRNA_antiguide
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001473	"A region of the pri miRNA that base pairs with the guide to form the hairpin." [SO:ke]	2929227	SOFA	SOFA	sequence	4	SO	transcript	miRNA_antiguide
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001473	"A region of the pri miRNA that base pairs with the guide to form the hairpin." [SO:ke]	2929228	SOFA	SOFA	sequence	4	SO	biological_region	miRNA_antiguide
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001473	"A region of the pri miRNA that base pairs with the guide to form the hairpin." [SO:ke]	4002383	SOFA	SOFA	sequence	5	SO	gene_member_region	miRNA_antiguide
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001473	"A region of the pri miRNA that base pairs with the guide to form the hairpin." [SO:ke]	5741331	SOFA	SOFA	sequence	7	SO	region	miRNA_antiguide
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001473	"A region of the pri miRNA that base pairs with the guide to form the hairpin." [SO:ke]	4966700	SOFA	SOFA	sequence	6	SO	biological_region	miRNA_antiguide
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001473	"A region of the pri miRNA that base pairs with the guide to form the hairpin." [SO:ke]	5996442	SOFA	SOFA	sequence	8	SO	sequence_feature	miRNA_antiguide
SO:0001474	\N	\N	"The boundary between the spliced leader and the first exon of the mRNA." [SO:ke]	SO:0001474	"The boundary between the spliced leader and the first exon of the mRNA." [SO:ke]	46347	\N	\N	sequence	0	SO	trans_splice_junction	trans_splice_junction
SO:0000699	SO:0001474	\N	"A sequence_feature with an extent of zero." [SO:ke]	SO:0001474	"The boundary between the spliced leader and the first exon of the mRNA." [SO:ke]	491084	\N	SOFA	sequence	1	SO	junction	trans_splice_junction
SO:0000110	SO:0000699	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001474	"The boundary between the spliced leader and the first exon of the mRNA." [SO:ke]	1073678	SOFA	SOFA	sequence	2	SO	sequence_feature	trans_splice_junction
SO:0001475	\N	\N	"A region of a primary transcript, that is removed via trans splicing." [PMID:16401417, SO:ke]	SO:0001475	"A region of a primary transcript, that is removed via trans splicing." [PMID:16401417, SO:ke]	46348	\N	\N	sequence	0	SO	outron	outron
SO:0000835	SO:0001475	\N	"A part of a primary transcript." [SO:ke]	SO:0001475	"A region of a primary transcript, that is removed via trans splicing." [PMID:16401417, SO:ke]	491085	\N	SOFA	sequence	1	SO	primary_transcript_region	outron
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001475	"A region of a primary transcript, that is removed via trans splicing." [PMID:16401417, SO:ke]	1073679	SOFA	SOFA	sequence	2	SO	primary_transcript	outron
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0001475	"A region of a primary transcript, that is removed via trans splicing." [PMID:16401417, SO:ke]	1073680	SOFA	SOFA	sequence	2	SO	transcript_region	outron
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001475	"A region of a primary transcript, that is removed via trans splicing." [PMID:16401417, SO:ke]	1904785	SOFA	SOFA	sequence	3	SO	transcript	outron
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001475	"A region of a primary transcript, that is removed via trans splicing." [PMID:16401417, SO:ke]	1904786	SOFA	SOFA	sequence	3	SO	transcript	outron
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001475	"A region of a primary transcript, that is removed via trans splicing." [PMID:16401417, SO:ke]	1904787	SOFA	SOFA	sequence	3	SO	biological_region	outron
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001475	"A region of a primary transcript, that is removed via trans splicing." [PMID:16401417, SO:ke]	2929229	SOFA	SOFA	sequence	4	SO	gene_member_region	outron
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001475	"A region of a primary transcript, that is removed via trans splicing." [PMID:16401417, SO:ke]	4966702	SOFA	SOFA	sequence	6	SO	region	outron
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001475	"A region of a primary transcript, that is removed via trans splicing." [PMID:16401417, SO:ke]	4002385	SOFA	SOFA	sequence	5	SO	biological_region	outron
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001475	"A region of a primary transcript, that is removed via trans splicing." [PMID:16401417, SO:ke]	5180736	SOFA	SOFA	sequence	7	SO	sequence_feature	outron
SO:0001476	\N	\N	"A plasmid that occurs naturally." [SO:xp]	SO:0001476	"A plasmid that occurs naturally." [SO:xp]	46349	\N	\N	sequence	0	SO	natural_plasmid	natural_plasmid
SO:0000155	SO:0001476	\N	"A self replicating, using the hosts cellular machinery, often circular nucleic acid molecule that is distinct from a chromosome in the organism." [SO:ma]	SO:0001476	"A plasmid that occurs naturally." [SO:xp]	491086	\N	\N	sequence	1	SO	plasmid	natural_plasmid
SO:0001038	SO:0001476	\N	"An MGE that is not integrated into the host chromosome." [SO:ke]	SO:0001476	"A plasmid that occurs naturally." [SO:xp]	491087	\N	\N	sequence	1	SO	extrachromosomal_mobile_genetic_element	natural_plasmid
SO:0001235	SO:0000155	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001476	"A plasmid that occurs naturally." [SO:xp]	1073681	\N	SOFA	sequence	2	SO	replicon	natural_plasmid
SO:0001037	SO:0001038	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0001476	"A plasmid that occurs naturally." [SO:xp]	1073682	\N	SOFA	sequence	2	SO	mobile_genetic_element	natural_plasmid
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001476	"A plasmid that occurs naturally." [SO:xp]	1904788	SOFA	SOFA	sequence	3	SO	biological_region	natural_plasmid
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001476	"A plasmid that occurs naturally." [SO:xp]	1904789	SOFA	SOFA	sequence	3	SO	biological_region	natural_plasmid
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001476	"A plasmid that occurs naturally." [SO:xp]	2929231	SOFA	SOFA	sequence	4	SO	region	natural_plasmid
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001476	"A plasmid that occurs naturally." [SO:xp]	4002387	SOFA	SOFA	sequence	5	SO	sequence_feature	natural_plasmid
SO:0001477	\N	\N	"A gene trap construct is a type of engineered plasmid which is designed to integrate into a genome and produce a fusion transcript between exons of the gene into which it inserts and a reporter element in the construct. Gene traps contain a splice acceptor, do not contain promoter elements for the reporter, and are mutagenic. Gene traps may be bicistronic with the second cassette containing a promoter driving an a selectable marker." [ZFIN:dh]	SO:0001477	"A gene trap construct is a type of engineered plasmid which is designed to integrate into a genome and produce a fusion transcript between exons of the gene into which it inserts and a reporter element in the construct. Gene traps contain a splice acceptor, do not contain promoter elements for the reporter, and are mutagenic. Gene traps may be bicistronic with the second cassette containing a promoter driving an a selectable marker." [ZFIN:dh]	46350	\N	\N	sequence	0	SO	gene_trap_construct	gene_trap_construct
SO:0000637	SO:0001477	\N	"A plasmid that is engineered." [SO:xp]	SO:0001477	"A gene trap construct is a type of engineered plasmid which is designed to integrate into a genome and produce a fusion transcript between exons of the gene into which it inserts and a reporter element in the construct. Gene traps contain a splice acceptor, do not contain promoter elements for the reporter, and are mutagenic. Gene traps may be bicistronic with the second cassette containing a promoter driving an a selectable marker." [ZFIN:dh]	491088	\N	\N	sequence	1	SO	engineered_plasmid	gene_trap_construct
SO:0000155	SO:0000637	\N	"A self replicating, using the hosts cellular machinery, often circular nucleic acid molecule that is distinct from a chromosome in the organism." [SO:ma]	SO:0001477	"A gene trap construct is a type of engineered plasmid which is designed to integrate into a genome and produce a fusion transcript between exons of the gene into which it inserts and a reporter element in the construct. Gene traps contain a splice acceptor, do not contain promoter elements for the reporter, and are mutagenic. Gene traps may be bicistronic with the second cassette containing a promoter driving an a selectable marker." [ZFIN:dh]	1073683	\N	\N	sequence	2	SO	plasmid	gene_trap_construct
SO:0000804	SO:0000637	\N	"A region that is engineered." [SO:xp]	SO:0001477	"A gene trap construct is a type of engineered plasmid which is designed to integrate into a genome and produce a fusion transcript between exons of the gene into which it inserts and a reporter element in the construct. Gene traps contain a splice acceptor, do not contain promoter elements for the reporter, and are mutagenic. Gene traps may be bicistronic with the second cassette containing a promoter driving an a selectable marker." [ZFIN:dh]	1073684	\N	\N	sequence	2	SO	engineered_region	gene_trap_construct
SO:0001235	SO:0000155	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001477	"A gene trap construct is a type of engineered plasmid which is designed to integrate into a genome and produce a fusion transcript between exons of the gene into which it inserts and a reporter element in the construct. Gene traps contain a splice acceptor, do not contain promoter elements for the reporter, and are mutagenic. Gene traps may be bicistronic with the second cassette containing a promoter driving an a selectable marker." [ZFIN:dh]	1904790	\N	SOFA	sequence	3	SO	replicon	gene_trap_construct
SO:0001409	SO:0000804	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001477	"A gene trap construct is a type of engineered plasmid which is designed to integrate into a genome and produce a fusion transcript between exons of the gene into which it inserts and a reporter element in the construct. Gene traps contain a splice acceptor, do not contain promoter elements for the reporter, and are mutagenic. Gene traps may be bicistronic with the second cassette containing a promoter driving an a selectable marker." [ZFIN:dh]	1904791	\N	SOFA	sequence	3	SO	biomaterial_region	gene_trap_construct
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001477	"A gene trap construct is a type of engineered plasmid which is designed to integrate into a genome and produce a fusion transcript between exons of the gene into which it inserts and a reporter element in the construct. Gene traps contain a splice acceptor, do not contain promoter elements for the reporter, and are mutagenic. Gene traps may be bicistronic with the second cassette containing a promoter driving an a selectable marker." [ZFIN:dh]	2929232	SOFA	SOFA	sequence	4	SO	biological_region	gene_trap_construct
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001477	"A gene trap construct is a type of engineered plasmid which is designed to integrate into a genome and produce a fusion transcript between exons of the gene into which it inserts and a reporter element in the construct. Gene traps contain a splice acceptor, do not contain promoter elements for the reporter, and are mutagenic. Gene traps may be bicistronic with the second cassette containing a promoter driving an a selectable marker." [ZFIN:dh]	2929233	SOFA	SOFA	sequence	4	SO	region	gene_trap_construct
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001477	"A gene trap construct is a type of engineered plasmid which is designed to integrate into a genome and produce a fusion transcript between exons of the gene into which it inserts and a reporter element in the construct. Gene traps contain a splice acceptor, do not contain promoter elements for the reporter, and are mutagenic. Gene traps may be bicistronic with the second cassette containing a promoter driving an a selectable marker." [ZFIN:dh]	4002388	SOFA	SOFA	sequence	5	SO	region	gene_trap_construct
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001477	"A gene trap construct is a type of engineered plasmid which is designed to integrate into a genome and produce a fusion transcript between exons of the gene into which it inserts and a reporter element in the construct. Gene traps contain a splice acceptor, do not contain promoter elements for the reporter, and are mutagenic. Gene traps may be bicistronic with the second cassette containing a promoter driving an a selectable marker." [ZFIN:dh]	4966703	SOFA	SOFA	sequence	6	SO	sequence_feature	gene_trap_construct
SO:0001478	\N	\N	"A promoter trap construct is a type of engineered plasmid which is designed to integrate into a genome and express a reporter when inserted in close proximity to a promoter element. Promoter traps typically do not contain promoter elements and are mutagenic." [ZFIN:dh]	SO:0001478	"A promoter trap construct is a type of engineered plasmid which is designed to integrate into a genome and express a reporter when inserted in close proximity to a promoter element. Promoter traps typically do not contain promoter elements and are mutagenic." [ZFIN:dh]	46351	\N	\N	sequence	0	SO	promoter_trap_construct	promoter_trap_construct
SO:0000637	SO:0001478	\N	"A plasmid that is engineered." [SO:xp]	SO:0001478	"A promoter trap construct is a type of engineered plasmid which is designed to integrate into a genome and express a reporter when inserted in close proximity to a promoter element. Promoter traps typically do not contain promoter elements and are mutagenic." [ZFIN:dh]	491089	\N	\N	sequence	1	SO	engineered_plasmid	promoter_trap_construct
SO:0000155	SO:0000637	\N	"A self replicating, using the hosts cellular machinery, often circular nucleic acid molecule that is distinct from a chromosome in the organism." [SO:ma]	SO:0001478	"A promoter trap construct is a type of engineered plasmid which is designed to integrate into a genome and express a reporter when inserted in close proximity to a promoter element. Promoter traps typically do not contain promoter elements and are mutagenic." [ZFIN:dh]	1073685	\N	\N	sequence	2	SO	plasmid	promoter_trap_construct
SO:0000804	SO:0000637	\N	"A region that is engineered." [SO:xp]	SO:0001478	"A promoter trap construct is a type of engineered plasmid which is designed to integrate into a genome and express a reporter when inserted in close proximity to a promoter element. Promoter traps typically do not contain promoter elements and are mutagenic." [ZFIN:dh]	1073686	\N	\N	sequence	2	SO	engineered_region	promoter_trap_construct
SO:0001235	SO:0000155	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001478	"A promoter trap construct is a type of engineered plasmid which is designed to integrate into a genome and express a reporter when inserted in close proximity to a promoter element. Promoter traps typically do not contain promoter elements and are mutagenic." [ZFIN:dh]	1904792	\N	SOFA	sequence	3	SO	replicon	promoter_trap_construct
SO:0001409	SO:0000804	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001478	"A promoter trap construct is a type of engineered plasmid which is designed to integrate into a genome and express a reporter when inserted in close proximity to a promoter element. Promoter traps typically do not contain promoter elements and are mutagenic." [ZFIN:dh]	1904793	\N	SOFA	sequence	3	SO	biomaterial_region	promoter_trap_construct
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001478	"A promoter trap construct is a type of engineered plasmid which is designed to integrate into a genome and express a reporter when inserted in close proximity to a promoter element. Promoter traps typically do not contain promoter elements and are mutagenic." [ZFIN:dh]	2929234	SOFA	SOFA	sequence	4	SO	biological_region	promoter_trap_construct
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001478	"A promoter trap construct is a type of engineered plasmid which is designed to integrate into a genome and express a reporter when inserted in close proximity to a promoter element. Promoter traps typically do not contain promoter elements and are mutagenic." [ZFIN:dh]	2929235	SOFA	SOFA	sequence	4	SO	region	promoter_trap_construct
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001478	"A promoter trap construct is a type of engineered plasmid which is designed to integrate into a genome and express a reporter when inserted in close proximity to a promoter element. Promoter traps typically do not contain promoter elements and are mutagenic." [ZFIN:dh]	4002390	SOFA	SOFA	sequence	5	SO	region	promoter_trap_construct
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001478	"A promoter trap construct is a type of engineered plasmid which is designed to integrate into a genome and express a reporter when inserted in close proximity to a promoter element. Promoter traps typically do not contain promoter elements and are mutagenic." [ZFIN:dh]	4966704	SOFA	SOFA	sequence	6	SO	sequence_feature	promoter_trap_construct
SO:0001479	\N	\N	"An enhancer trap construct is a type of engineered plasmid which is designed to integrate into a genome and express a reporter when the expression from a basic minimal promoter is enhanced by genomic enhancer elements. Enhancer traps contain promoter elements and are not usually mutagenic." [ZFIN:dh]	SO:0001479	"An enhancer trap construct is a type of engineered plasmid which is designed to integrate into a genome and express a reporter when the expression from a basic minimal promoter is enhanced by genomic enhancer elements. Enhancer traps contain promoter elements and are not usually mutagenic." [ZFIN:dh]	46352	\N	\N	sequence	0	SO	enhancer_trap_construct	enhancer_trap_construct
SO:0000637	SO:0001479	\N	"A plasmid that is engineered." [SO:xp]	SO:0001479	"An enhancer trap construct is a type of engineered plasmid which is designed to integrate into a genome and express a reporter when the expression from a basic minimal promoter is enhanced by genomic enhancer elements. Enhancer traps contain promoter elements and are not usually mutagenic." [ZFIN:dh]	491090	\N	\N	sequence	1	SO	engineered_plasmid	enhancer_trap_construct
SO:0000155	SO:0000637	\N	"A self replicating, using the hosts cellular machinery, often circular nucleic acid molecule that is distinct from a chromosome in the organism." [SO:ma]	SO:0001479	"An enhancer trap construct is a type of engineered plasmid which is designed to integrate into a genome and express a reporter when the expression from a basic minimal promoter is enhanced by genomic enhancer elements. Enhancer traps contain promoter elements and are not usually mutagenic." [ZFIN:dh]	1073687	\N	\N	sequence	2	SO	plasmid	enhancer_trap_construct
SO:0000804	SO:0000637	\N	"A region that is engineered." [SO:xp]	SO:0001479	"An enhancer trap construct is a type of engineered plasmid which is designed to integrate into a genome and express a reporter when the expression from a basic minimal promoter is enhanced by genomic enhancer elements. Enhancer traps contain promoter elements and are not usually mutagenic." [ZFIN:dh]	1073688	\N	\N	sequence	2	SO	engineered_region	enhancer_trap_construct
SO:0001235	SO:0000155	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001479	"An enhancer trap construct is a type of engineered plasmid which is designed to integrate into a genome and express a reporter when the expression from a basic minimal promoter is enhanced by genomic enhancer elements. Enhancer traps contain promoter elements and are not usually mutagenic." [ZFIN:dh]	1904794	\N	SOFA	sequence	3	SO	replicon	enhancer_trap_construct
SO:0001409	SO:0000804	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001479	"An enhancer trap construct is a type of engineered plasmid which is designed to integrate into a genome and express a reporter when the expression from a basic minimal promoter is enhanced by genomic enhancer elements. Enhancer traps contain promoter elements and are not usually mutagenic." [ZFIN:dh]	1904795	\N	SOFA	sequence	3	SO	biomaterial_region	enhancer_trap_construct
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001479	"An enhancer trap construct is a type of engineered plasmid which is designed to integrate into a genome and express a reporter when the expression from a basic minimal promoter is enhanced by genomic enhancer elements. Enhancer traps contain promoter elements and are not usually mutagenic." [ZFIN:dh]	2929236	SOFA	SOFA	sequence	4	SO	biological_region	enhancer_trap_construct
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001479	"An enhancer trap construct is a type of engineered plasmid which is designed to integrate into a genome and express a reporter when the expression from a basic minimal promoter is enhanced by genomic enhancer elements. Enhancer traps contain promoter elements and are not usually mutagenic." [ZFIN:dh]	2929237	SOFA	SOFA	sequence	4	SO	region	enhancer_trap_construct
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001479	"An enhancer trap construct is a type of engineered plasmid which is designed to integrate into a genome and express a reporter when the expression from a basic minimal promoter is enhanced by genomic enhancer elements. Enhancer traps contain promoter elements and are not usually mutagenic." [ZFIN:dh]	4002392	SOFA	SOFA	sequence	5	SO	region	enhancer_trap_construct
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001479	"An enhancer trap construct is a type of engineered plasmid which is designed to integrate into a genome and express a reporter when the expression from a basic minimal promoter is enhanced by genomic enhancer elements. Enhancer traps contain promoter elements and are not usually mutagenic." [ZFIN:dh]	4966705	SOFA	SOFA	sequence	6	SO	sequence_feature	enhancer_trap_construct
SO:0001480	\N	\N	"A region of sequence from the end of a PAC clone that may provide a highly specific marker." [ZFIN:mh]	SO:0001480	"A region of sequence from the end of a PAC clone that may provide a highly specific marker." [ZFIN:mh]	46353	\N	\N	sequence	0	SO	PAC_end	PAC_end
SO:0000150	SO:0001480	\N	"A sequence obtained from a single sequencing experiment. Typically a read is produced when a base calling program interprets information from a chromatogram trace file produced from a sequencing machine." [SO:rd]	SO:0001480	"A region of sequence from the end of a PAC clone that may provide a highly specific marker." [ZFIN:mh]	491091	\N	SOFA	sequence	1	SO	read	PAC_end
SO:0000154	SO:0001480	\N	"The P1-derived artificial chromosome are DNA constructs that are derived from the DNA of P1 bacteriophage. They can carry large amounts (about 100-300 kilobases) of other sequences for a variety of bioengineering purposes. It is one type of vector used to clone DNA fragments (100- to 300-kb insert size; average, 150 kb) in Escherichia coli cells." [http://en.wikipedia.org/wiki/P1-derived_artificial_chromosome]	SO:0001480	"A region of sequence from the end of a PAC clone that may provide a highly specific marker." [ZFIN:mh]	491092	\N	\N	sequence	1	SO	PAC	PAC_end
SO:0000143	SO:0000150	\N	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0001480	"A region of sequence from the end of a PAC clone that may provide a highly specific marker." [ZFIN:mh]	1073689	SOFA	SOFA	sequence	2	SO	assembly_component	PAC_end
SO:0000149	SO:0000150	\N	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	SO:0001480	"A region of sequence from the end of a PAC clone that may provide a highly specific marker." [ZFIN:mh]	1073690	SOFA	SOFA	sequence	2	SO	contig	PAC_end
SO:0000440	SO:0000154	\N	"A replicon that has been modified to act as a vector for foreign sequence." [SO:ma]	SO:0001480	"A region of sequence from the end of a PAC clone that may provide a highly specific marker." [ZFIN:mh]	1073691	\N	\N	sequence	2	SO	vector_replicon	PAC_end
SO:0001410	SO:0000143	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001480	"A region of sequence from the end of a PAC clone that may provide a highly specific marker." [ZFIN:mh]	2929239	SOFA	SOFA	sequence	4	SO	experimental_feature	PAC_end
SO:0000143	SO:0000149	\N	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0001480	"A region of sequence from the end of a PAC clone that may provide a highly specific marker." [ZFIN:mh]	1904797	SOFA	SOFA	sequence	3	SO	assembly_component	PAC_end
SO:0000148	SO:0000149	\N	"One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's." [SO:ls]	SO:0001480	"A region of sequence from the end of a PAC clone that may provide a highly specific marker." [ZFIN:mh]	1904798	SOFA	SOFA	sequence	3	SO	supercontig	PAC_end
SO:0000353	SO:0000149	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001480	"A region of sequence from the end of a PAC clone that may provide a highly specific marker." [ZFIN:mh]	1904799	SOFA	SOFA	sequence	3	SO	sequence_assembly	PAC_end
SO:0000151	SO:0000440	\N	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0001480	"A region of sequence from the end of a PAC clone that may provide a highly specific marker." [ZFIN:mh]	1904800	\N	SOFA	sequence	3	SO	clone	PAC_end
SO:0001235	SO:0000440	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001480	"A region of sequence from the end of a PAC clone that may provide a highly specific marker." [ZFIN:mh]	1904801	\N	SOFA	sequence	3	SO	replicon	PAC_end
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001480	"A region of sequence from the end of a PAC clone that may provide a highly specific marker." [ZFIN:mh]	6469763	SOFA	SOFA	sequence	9	SO	region	PAC_end
SO:0000719	SO:0000148	\N	"An ordered and oriented set of scaffolds based on somewhat weaker sets of inferential evidence such as one set of mate pair reads together with supporting evidence from ESTs or location of markers from SNP or microsatellite maps, or cytogenetic localization of contained markers." [FB:WG]	SO:0001480	"A region of sequence from the end of a PAC clone that may provide a highly specific marker." [ZFIN:mh]	2929240	SOFA	SOFA	sequence	4	SO	ultracontig	PAC_end
SO:0001876	SO:0000148	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001480	"A region of sequence from the end of a PAC clone that may provide a highly specific marker." [ZFIN:mh]	2929241	SOFA	\N	sequence	4	SO	partial_genomic_sequence_assembly	PAC_end
SO:0001248	SO:0000353	\N	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0001480	"A region of sequence from the end of a PAC clone that may provide a highly specific marker." [ZFIN:mh]	5407479	SOFA	SOFA	sequence	7	SO	assembly	PAC_end
SO:0000695	SO:0000151	\N	"A sequence used in experiment." [SO:ke]	SO:0001480	"A region of sequence from the end of a PAC clone that may provide a highly specific marker." [ZFIN:mh]	2929243	SOFA	SOFA	sequence	4	SO	reagent	PAC_end
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001480	"A region of sequence from the end of a PAC clone that may provide a highly specific marker." [ZFIN:mh]	2929244	SOFA	SOFA	sequence	4	SO	biological_region	PAC_end
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001480	"A region of sequence from the end of a PAC clone that may provide a highly specific marker." [ZFIN:mh]	6778560	SOFA	SOFA	sequence	10	SO	sequence_feature	PAC_end
SO:0001876	SO:0000719	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001480	"A region of sequence from the end of a PAC clone that may provide a highly specific marker." [ZFIN:mh]	4002395	SOFA	\N	sequence	5	SO	partial_genomic_sequence_assembly	PAC_end
SO:0000353	SO:0001876	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001480	"A region of sequence from the end of a PAC clone that may provide a highly specific marker." [ZFIN:mh]	4966706	\N	SOFA	sequence	6	SO	sequence_assembly	PAC_end
SO:0001410	SO:0001248	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001480	"A region of sequence from the end of a PAC clone that may provide a highly specific marker." [ZFIN:mh]	5876452	SOFA	SOFA	sequence	8	SO	experimental_feature	PAC_end
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001480	"A region of sequence from the end of a PAC clone that may provide a highly specific marker." [ZFIN:mh]	4002398	SOFA	SOFA	sequence	5	SO	biomaterial_region	PAC_end
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001480	"A region of sequence from the end of a PAC clone that may provide a highly specific marker." [ZFIN:mh]	4002399	SOFA	SOFA	sequence	5	SO	region	PAC_end
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001480	"A region of sequence from the end of a PAC clone that may provide a highly specific marker." [ZFIN:mh]	4966709	SOFA	SOFA	sequence	6	SO	region	PAC_end
SO:0001481	\N	\N	"RAPD is a 'PCR product' where a sequence variant is identified through the use of PCR with random primers." [ZFIN:mh]	SO:0001481	"RAPD is a 'PCR product' where a sequence variant is identified through the use of PCR with random primers." [ZFIN:mh]	46354	\N	\N	sequence	0	SO	RAPD	RAPD
SO:0000006	SO:0001481	\N	"A region amplified by a PCR reaction." [SO:ke]	SO:0001481	"RAPD is a 'PCR product' where a sequence variant is identified through the use of PCR with random primers." [ZFIN:mh]	491093	\N	SOFA	sequence	1	SO	PCR_product	RAPD
SO:0000695	SO:0000006	\N	"A sequence used in experiment." [SO:ke]	SO:0001481	"RAPD is a 'PCR product' where a sequence variant is identified through the use of PCR with random primers." [ZFIN:mh]	1073692	SOFA	SOFA	sequence	2	SO	reagent	RAPD
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001481	"RAPD is a 'PCR product' where a sequence variant is identified through the use of PCR with random primers." [ZFIN:mh]	1904802	SOFA	SOFA	sequence	3	SO	biomaterial_region	RAPD
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001481	"RAPD is a 'PCR product' where a sequence variant is identified through the use of PCR with random primers." [ZFIN:mh]	2929245	SOFA	SOFA	sequence	4	SO	region	RAPD
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001481	"RAPD is a 'PCR product' where a sequence variant is identified through the use of PCR with random primers." [ZFIN:mh]	4002400	SOFA	SOFA	sequence	5	SO	sequence_feature	RAPD
SO:0001482	\N	\N	"" []	SO:0001482	"" []	46355	\N	\N	sequence	0	SO	shadow_enhancer	shadow_enhancer
SO:0000165	SO:0001482	\N	"A cis-acting sequence that increases the utilization of (some) eukaryotic promoters, and can function in either orientation and in any location (upstream or downstream) relative to the promoter." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001482	"" []	491094	\N	SOFA	sequence	1	SO	enhancer	shadow_enhancer
SO:0000727	SO:0000165	\N	"A regulatory region where transcription factor binding sites clustered to regulate various aspects of transcription activities. (CRMs can be located a few kb to hundred kb upstream of the basal promoter, in the coding sequence, within introns, or in the downstream 3'UTR sequences, as well as on different chromosome). A single gene can be regulated by multiple CRMs to give precise control of its spatial and temporal expression. CRMs function as nodes in large, intertwined regulatory network." [PMID:19660565, SO:SG]	SO:0001482	"" []	1073693	SOFA	SOFA	sequence	2	SO	CRM	shadow_enhancer
SO:0001055	SO:0000727	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001482	"" []	1904803	SOFA	SOFA	sequence	3	SO	transcriptional_cis_regulatory_region	shadow_enhancer
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001482	"" []	2929246	SOFA	SOFA	sequence	4	SO	transcription_regulatory_region	shadow_enhancer
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001482	"" []	4002401	SOFA	SOFA	sequence	5	SO	regulatory_region	shadow_enhancer
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001482	"" []	4966710	SOFA	SOFA	sequence	6	SO	gene_member_region	shadow_enhancer
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001482	"" []	5741332	SOFA	SOFA	sequence	7	SO	biological_region	shadow_enhancer
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001482	"" []	6311116	SOFA	SOFA	sequence	8	SO	region	shadow_enhancer
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001482	"" []	6699372	SOFA	SOFA	sequence	9	SO	sequence_feature	shadow_enhancer
SO:0001483	\N	SOFA	"SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist." [SO:bm]	SO:0001483	"SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist." [SO:bm]	46356	\N	SOFA	sequence	0	SO	SNV	SNV
SO:1000002	SO:0001483	SOFA	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	SO:0001483	"SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist." [SO:bm]	491095	SOFA	SOFA	sequence	1	SO	substitution	SNV
SO:0001059	SO:1000002	SOFA	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0001483	"SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist." [SO:bm]	1073694	SOFA	SOFA	sequence	2	SO	sequence_alteration	SNV
SO:0001411	SO:1000002	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001483	"SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist." [SO:bm]	1073695	SOFA	SOFA	sequence	2	SO	biological_region	SNV
SO:0002072	SO:0001059	SOFA	"" []	SO:0001483	"SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist." [SO:bm]	1904804	SOFA	\N	sequence	3	SO	sequence_comparison	SNV
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001483	"SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist." [SO:bm]	1904805	SOFA	SOFA	sequence	3	SO	region	SNV
SO:0000110	SO:0002072	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001483	"SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist." [SO:bm]	2929247	\N	SOFA	sequence	4	SO	sequence_feature	SNV
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001483	"SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist." [SO:bm]	2929248	SOFA	SOFA	sequence	4	SO	sequence_feature	SNV
SO:0001484	\N	\N	"An X element combinatorial repeat is a repeat region located between the X element and the telomere or adjacent Y' element." [http://www.yeastgenome.org/help/glossary.html]	SO:0001484	"An X element combinatorial repeat is a repeat region located between the X element and the telomere or adjacent Y' element." [http://www.yeastgenome.org/help/glossary.html]	46357	\N	\N	sequence	0	SO	X_element_combinatorial_repeat	X_element_combinatorial_repeat
SO:0000624	SO:0001484	\N	"A specific structure at the end of a linear chromosome, required for the integrity and maintenance of the end." [SO:ma]	SO:0001484	"An X element combinatorial repeat is a repeat region located between the X element and the telomere or adjacent Y' element." [http://www.yeastgenome.org/help/glossary.html]	491096	\N	SOFA	sequence	1	SO	telomere	X_element_combinatorial_repeat
SO:0000657	SO:0001484	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0001484	"An X element combinatorial repeat is a repeat region located between the X element and the telomere or adjacent Y' element." [http://www.yeastgenome.org/help/glossary.html]	491097	\N	SOFA	sequence	1	SO	repeat_region	X_element_combinatorial_repeat
SO:0000628	SO:0000624	\N	"" []	SO:0001484	"An X element combinatorial repeat is a repeat region located between the X element and the telomere or adjacent Y' element." [http://www.yeastgenome.org/help/glossary.html]	1073696	SOFA	SOFA	sequence	2	SO	chromosomal_structural_element	X_element_combinatorial_repeat
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001484	"An X element combinatorial repeat is a repeat region located between the X element and the telomere or adjacent Y' element." [http://www.yeastgenome.org/help/glossary.html]	1073697	SOFA	SOFA	sequence	2	SO	biological_region	X_element_combinatorial_repeat
SO:0000830	SO:0000628	\N	"A region of a chromosome." [SO:ke]	SO:0001484	"An X element combinatorial repeat is a repeat region located between the X element and the telomere or adjacent Y' element." [http://www.yeastgenome.org/help/glossary.html]	1904806	SOFA	SOFA	sequence	3	SO	chromosome_part	X_element_combinatorial_repeat
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001484	"An X element combinatorial repeat is a repeat region located between the X element and the telomere or adjacent Y' element." [http://www.yeastgenome.org/help/glossary.html]	5741333	SOFA	SOFA	sequence	7	SO	region	X_element_combinatorial_repeat
SO:0000340	SO:0000830	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0001484	"An X element combinatorial repeat is a repeat region located between the X element and the telomere or adjacent Y' element." [http://www.yeastgenome.org/help/glossary.html]	2929249	SOFA	SOFA	sequence	4	SO	chromosome	X_element_combinatorial_repeat
SO:0001411	SO:0000830	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001484	"An X element combinatorial repeat is a repeat region located between the X element and the telomere or adjacent Y' element." [http://www.yeastgenome.org/help/glossary.html]	2929250	SOFA	SOFA	sequence	4	SO	biological_region	X_element_combinatorial_repeat
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001484	"An X element combinatorial repeat is a repeat region located between the X element and the telomere or adjacent Y' element." [http://www.yeastgenome.org/help/glossary.html]	5817335	SOFA	SOFA	sequence	8	SO	sequence_feature	X_element_combinatorial_repeat
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001484	"An X element combinatorial repeat is a repeat region located between the X element and the telomere or adjacent Y' element." [http://www.yeastgenome.org/help/glossary.html]	4002402	SOFA	SOFA	sequence	5	SO	replicon	X_element_combinatorial_repeat
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001484	"An X element combinatorial repeat is a repeat region located between the X element and the telomere or adjacent Y' element." [http://www.yeastgenome.org/help/glossary.html]	4966711	SOFA	SOFA	sequence	6	SO	biological_region	X_element_combinatorial_repeat
SO:0001485	\N	\N	"A Y' element is a repeat region (SO:0000657) located adjacent to telomeric repeats or X element combinatorial repeats, either as a single copy or tandem repeat of two to four copies." [http:http\\://www.yeastgenome.org/help/glossary.html]	SO:0001485	"A Y' element is a repeat region (SO:0000657) located adjacent to telomeric repeats or X element combinatorial repeats, either as a single copy or tandem repeat of two to four copies." [http:http\\://www.yeastgenome.org/help/glossary.html]	46358	\N	\N	sequence	0	SO	Y_prime_element	Y_prime_element
SO:0000624	SO:0001485	\N	"A specific structure at the end of a linear chromosome, required for the integrity and maintenance of the end." [SO:ma]	SO:0001485	"A Y' element is a repeat region (SO:0000657) located adjacent to telomeric repeats or X element combinatorial repeats, either as a single copy or tandem repeat of two to four copies." [http:http\\://www.yeastgenome.org/help/glossary.html]	491098	\N	SOFA	sequence	1	SO	telomere	Y_prime_element
SO:0000657	SO:0001485	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0001485	"A Y' element is a repeat region (SO:0000657) located adjacent to telomeric repeats or X element combinatorial repeats, either as a single copy or tandem repeat of two to four copies." [http:http\\://www.yeastgenome.org/help/glossary.html]	491099	\N	SOFA	sequence	1	SO	repeat_region	Y_prime_element
SO:0000628	SO:0000624	\N	"" []	SO:0001485	"A Y' element is a repeat region (SO:0000657) located adjacent to telomeric repeats or X element combinatorial repeats, either as a single copy or tandem repeat of two to four copies." [http:http\\://www.yeastgenome.org/help/glossary.html]	1073698	SOFA	SOFA	sequence	2	SO	chromosomal_structural_element	Y_prime_element
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001485	"A Y' element is a repeat region (SO:0000657) located adjacent to telomeric repeats or X element combinatorial repeats, either as a single copy or tandem repeat of two to four copies." [http:http\\://www.yeastgenome.org/help/glossary.html]	1073699	SOFA	SOFA	sequence	2	SO	biological_region	Y_prime_element
SO:0000830	SO:0000628	\N	"A region of a chromosome." [SO:ke]	SO:0001485	"A Y' element is a repeat region (SO:0000657) located adjacent to telomeric repeats or X element combinatorial repeats, either as a single copy or tandem repeat of two to four copies." [http:http\\://www.yeastgenome.org/help/glossary.html]	1904808	SOFA	SOFA	sequence	3	SO	chromosome_part	Y_prime_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001485	"A Y' element is a repeat region (SO:0000657) located adjacent to telomeric repeats or X element combinatorial repeats, either as a single copy or tandem repeat of two to four copies." [http:http\\://www.yeastgenome.org/help/glossary.html]	5741334	SOFA	SOFA	sequence	7	SO	region	Y_prime_element
SO:0000340	SO:0000830	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0001485	"A Y' element is a repeat region (SO:0000657) located adjacent to telomeric repeats or X element combinatorial repeats, either as a single copy or tandem repeat of two to four copies." [http:http\\://www.yeastgenome.org/help/glossary.html]	2929252	SOFA	SOFA	sequence	4	SO	chromosome	Y_prime_element
SO:0001411	SO:0000830	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001485	"A Y' element is a repeat region (SO:0000657) located adjacent to telomeric repeats or X element combinatorial repeats, either as a single copy or tandem repeat of two to four copies." [http:http\\://www.yeastgenome.org/help/glossary.html]	2929253	SOFA	SOFA	sequence	4	SO	biological_region	Y_prime_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001485	"A Y' element is a repeat region (SO:0000657) located adjacent to telomeric repeats or X element combinatorial repeats, either as a single copy or tandem repeat of two to four copies." [http:http\\://www.yeastgenome.org/help/glossary.html]	5817336	SOFA	SOFA	sequence	8	SO	sequence_feature	Y_prime_element
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001485	"A Y' element is a repeat region (SO:0000657) located adjacent to telomeric repeats or X element combinatorial repeats, either as a single copy or tandem repeat of two to four copies." [http:http\\://www.yeastgenome.org/help/glossary.html]	4002404	SOFA	SOFA	sequence	5	SO	replicon	Y_prime_element
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001485	"A Y' element is a repeat region (SO:0000657) located adjacent to telomeric repeats or X element combinatorial repeats, either as a single copy or tandem repeat of two to four copies." [http:http\\://www.yeastgenome.org/help/glossary.html]	4966712	SOFA	SOFA	sequence	6	SO	biological_region	Y_prime_element
SO:0001486	\N	\N	"The status of a whole genome sequence, where the data is minimally filtered or un-filtered, from any number of sequencing platforms, and is assembled into contigs. Genome sequence of this quality may harbour regions of poor quality and can be relatively incomplete." [DOI:10.1126]	SO:0001486	"The status of a whole genome sequence, where the data is minimally filtered or un-filtered, from any number of sequencing platforms, and is assembled into contigs. Genome sequence of this quality may harbour regions of poor quality and can be relatively incomplete." [DOI:10.1126]	46359	\N	\N	sequence	0	SO	standard_draft	standard_draft
SO:0001499	SO:0001486	\N	"The status of whole genome sequence." [DOI:10.1126]	SO:0001486	"The status of a whole genome sequence, where the data is minimally filtered or un-filtered, from any number of sequencing platforms, and is assembled into contigs. Genome sequence of this quality may harbour regions of poor quality and can be relatively incomplete." [DOI:10.1126]	491100	\N	\N	sequence	1	SO	whole_genome_sequence_status	standard_draft
SO:0000905	SO:0001499	\N	"An attribute describing the status of a feature, based on the available evidence." [SO:ke]	SO:0001486	"The status of a whole genome sequence, where the data is minimally filtered or un-filtered, from any number of sequencing platforms, and is assembled into contigs. Genome sequence of this quality may harbour regions of poor quality and can be relatively incomplete." [DOI:10.1126]	1073700	\N	\N	sequence	2	SO	status	standard_draft
SO:0000733	SO:0000905	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001486	"The status of a whole genome sequence, where the data is minimally filtered or un-filtered, from any number of sequencing platforms, and is assembled into contigs. Genome sequence of this quality may harbour regions of poor quality and can be relatively incomplete." [DOI:10.1126]	1904810	\N	\N	sequence	3	SO	feature_attribute	standard_draft
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001486	"The status of a whole genome sequence, where the data is minimally filtered or un-filtered, from any number of sequencing platforms, and is assembled into contigs. Genome sequence of this quality may harbour regions of poor quality and can be relatively incomplete." [DOI:10.1126]	2929255	\N	\N	sequence	4	SO	sequence_attribute	standard_draft
SO:0001487	\N	\N	"The status of a whole genome sequence, where overall coverage represents at least 90 percent of the genome." [DOI:10.1126]	SO:0001487	"The status of a whole genome sequence, where overall coverage represents at least 90 percent of the genome." [DOI:10.1126]	46360	\N	\N	sequence	0	SO	high_quality_draft	high_quality_draft
SO:0001499	SO:0001487	\N	"The status of whole genome sequence." [DOI:10.1126]	SO:0001487	"The status of a whole genome sequence, where overall coverage represents at least 90 percent of the genome." [DOI:10.1126]	491101	\N	\N	sequence	1	SO	whole_genome_sequence_status	high_quality_draft
SO:0000905	SO:0001499	\N	"An attribute describing the status of a feature, based on the available evidence." [SO:ke]	SO:0001487	"The status of a whole genome sequence, where overall coverage represents at least 90 percent of the genome." [DOI:10.1126]	1073701	\N	\N	sequence	2	SO	status	high_quality_draft
SO:0000733	SO:0000905	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001487	"The status of a whole genome sequence, where overall coverage represents at least 90 percent of the genome." [DOI:10.1126]	1904811	\N	\N	sequence	3	SO	feature_attribute	high_quality_draft
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001487	"The status of a whole genome sequence, where overall coverage represents at least 90 percent of the genome." [DOI:10.1126]	2929256	\N	\N	sequence	4	SO	sequence_attribute	high_quality_draft
SO:0001488	\N	\N	"The status of a whole genome sequence, where additional work has been performed, using either manual or automated methods, such as gap resolution." [DOI:10.1126]	SO:0001488	"The status of a whole genome sequence, where additional work has been performed, using either manual or automated methods, such as gap resolution." [DOI:10.1126]	46361	\N	\N	sequence	0	SO	improved_high_quality_draft	improved_high_quality_draft
SO:0001499	SO:0001488	\N	"The status of whole genome sequence." [DOI:10.1126]	SO:0001488	"The status of a whole genome sequence, where additional work has been performed, using either manual or automated methods, such as gap resolution." [DOI:10.1126]	491102	\N	\N	sequence	1	SO	whole_genome_sequence_status	improved_high_quality_draft
SO:0000905	SO:0001499	\N	"An attribute describing the status of a feature, based on the available evidence." [SO:ke]	SO:0001488	"The status of a whole genome sequence, where additional work has been performed, using either manual or automated methods, such as gap resolution." [DOI:10.1126]	1073702	\N	\N	sequence	2	SO	status	improved_high_quality_draft
SO:0000733	SO:0000905	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001488	"The status of a whole genome sequence, where additional work has been performed, using either manual or automated methods, such as gap resolution." [DOI:10.1126]	1904812	\N	\N	sequence	3	SO	feature_attribute	improved_high_quality_draft
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001488	"The status of a whole genome sequence, where additional work has been performed, using either manual or automated methods, such as gap resolution." [DOI:10.1126]	2929257	\N	\N	sequence	4	SO	sequence_attribute	improved_high_quality_draft
SO:0001489	\N	\N	"The status of a whole genome sequence,where annotation, and verification of coding regions has occurred." [DOI:10.1126]	SO:0001489	"The status of a whole genome sequence,where annotation, and verification of coding regions has occurred." [DOI:10.1126]	46362	\N	\N	sequence	0	SO	annotation_directed_improved_draft	annotation_directed_improved_draft
SO:0001499	SO:0001489	\N	"The status of whole genome sequence." [DOI:10.1126]	SO:0001489	"The status of a whole genome sequence,where annotation, and verification of coding regions has occurred." [DOI:10.1126]	491103	\N	\N	sequence	1	SO	whole_genome_sequence_status	annotation_directed_improved_draft
SO:0000905	SO:0001499	\N	"An attribute describing the status of a feature, based on the available evidence." [SO:ke]	SO:0001489	"The status of a whole genome sequence,where annotation, and verification of coding regions has occurred." [DOI:10.1126]	1073703	\N	\N	sequence	2	SO	status	annotation_directed_improved_draft
SO:0000733	SO:0000905	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001489	"The status of a whole genome sequence,where annotation, and verification of coding regions has occurred." [DOI:10.1126]	1904813	\N	\N	sequence	3	SO	feature_attribute	annotation_directed_improved_draft
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001489	"The status of a whole genome sequence,where annotation, and verification of coding regions has occurred." [DOI:10.1126]	2929258	\N	\N	sequence	4	SO	sequence_attribute	annotation_directed_improved_draft
SO:0001490	\N	\N	"The status of a whole genome sequence, where the assembly is high quality, closure approaches have been successful for most gaps, misassemblies and low quality regions." [DOI:10.1126]	SO:0001490	"The status of a whole genome sequence, where the assembly is high quality, closure approaches have been successful for most gaps, misassemblies and low quality regions." [DOI:10.1126]	46363	\N	\N	sequence	0	SO	noncontiguous_finished	noncontiguous_finished
SO:0001499	SO:0001490	\N	"The status of whole genome sequence." [DOI:10.1126]	SO:0001490	"The status of a whole genome sequence, where the assembly is high quality, closure approaches have been successful for most gaps, misassemblies and low quality regions." [DOI:10.1126]	491104	\N	\N	sequence	1	SO	whole_genome_sequence_status	noncontiguous_finished
SO:0000905	SO:0001499	\N	"An attribute describing the status of a feature, based on the available evidence." [SO:ke]	SO:0001490	"The status of a whole genome sequence, where the assembly is high quality, closure approaches have been successful for most gaps, misassemblies and low quality regions." [DOI:10.1126]	1073704	\N	\N	sequence	2	SO	status	noncontiguous_finished
SO:0000733	SO:0000905	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001490	"The status of a whole genome sequence, where the assembly is high quality, closure approaches have been successful for most gaps, misassemblies and low quality regions." [DOI:10.1126]	1904814	\N	\N	sequence	3	SO	feature_attribute	noncontiguous_finished
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001490	"The status of a whole genome sequence, where the assembly is high quality, closure approaches have been successful for most gaps, misassemblies and low quality regions." [DOI:10.1126]	2929259	\N	\N	sequence	4	SO	sequence_attribute	noncontiguous_finished
SO:0001491	\N	\N	"The status of a whole genome sequence, with less than 1 error per 100,000 base pairs." [DOI:10.1126]	SO:0001491	"The status of a whole genome sequence, with less than 1 error per 100,000 base pairs." [DOI:10.1126]	46364	\N	\N	sequence	0	SO	finished_genome	finished_genome
SO:0001499	SO:0001491	\N	"The status of whole genome sequence." [DOI:10.1126]	SO:0001491	"The status of a whole genome sequence, with less than 1 error per 100,000 base pairs." [DOI:10.1126]	491105	\N	\N	sequence	1	SO	whole_genome_sequence_status	finished_genome
SO:0000905	SO:0001499	\N	"An attribute describing the status of a feature, based on the available evidence." [SO:ke]	SO:0001491	"The status of a whole genome sequence, with less than 1 error per 100,000 base pairs." [DOI:10.1126]	1073705	\N	\N	sequence	2	SO	status	finished_genome
SO:0000733	SO:0000905	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001491	"The status of a whole genome sequence, with less than 1 error per 100,000 base pairs." [DOI:10.1126]	1904815	\N	\N	sequence	3	SO	feature_attribute	finished_genome
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001491	"The status of a whole genome sequence, with less than 1 error per 100,000 base pairs." [DOI:10.1126]	2929260	\N	\N	sequence	4	SO	sequence_attribute	finished_genome
SO:0001492	\N	\N	"A regulatory region that is part of an intron." [SO:ke]	SO:0001492	"A regulatory region that is part of an intron." [SO:ke]	46365	\N	\N	sequence	0	SO	intronic_regulatory_region	intronic_regulatory_region
SO:0000188	SO:0001492	\N	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001492	"A regulatory region that is part of an intron." [SO:ke]	491106	\N	SOFA	sequence	1	SO	intron	intronic_regulatory_region
SO:0001679	SO:0001492	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001492	"A regulatory region that is part of an intron." [SO:ke]	491107	\N	SOFA	sequence	1	SO	transcription_regulatory_region	intronic_regulatory_region
SO:0000835	SO:0000188	\N	"A part of a primary transcript." [SO:ke]	SO:0001492	"A regulatory region that is part of an intron." [SO:ke]	1073706	SOFA	SOFA	sequence	2	SO	primary_transcript_region	intronic_regulatory_region
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001492	"A regulatory region that is part of an intron." [SO:ke]	1073707	SOFA	SOFA	sequence	2	SO	regulatory_region	intronic_regulatory_region
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001492	"A regulatory region that is part of an intron." [SO:ke]	1904816	SOFA	SOFA	sequence	3	SO	primary_transcript	intronic_regulatory_region
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0001492	"A regulatory region that is part of an intron." [SO:ke]	1904817	SOFA	SOFA	sequence	3	SO	transcript_region	intronic_regulatory_region
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001492	"A regulatory region that is part of an intron." [SO:ke]	1904818	SOFA	SOFA	sequence	3	SO	gene_member_region	intronic_regulatory_region
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001492	"A regulatory region that is part of an intron." [SO:ke]	2929261	SOFA	SOFA	sequence	4	SO	transcript	intronic_regulatory_region
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001492	"A regulatory region that is part of an intron." [SO:ke]	2929262	SOFA	SOFA	sequence	4	SO	transcript	intronic_regulatory_region
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001492	"A regulatory region that is part of an intron." [SO:ke]	2929263	SOFA	SOFA	sequence	4	SO	biological_region	intronic_regulatory_region
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001492	"A regulatory region that is part of an intron." [SO:ke]	4966713	SOFA	SOFA	sequence	6	SO	biological_region	intronic_regulatory_region
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001492	"A regulatory region that is part of an intron." [SO:ke]	4002406	SOFA	SOFA	sequence	5	SO	gene_member_region	intronic_regulatory_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001492	"A regulatory region that is part of an intron." [SO:ke]	5180739	SOFA	SOFA	sequence	7	SO	region	intronic_regulatory_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001492	"A regulatory region that is part of an intron." [SO:ke]	5996444	SOFA	SOFA	sequence	8	SO	sequence_feature	intronic_regulatory_region
SO:0001493	\N	\N	"A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region composed of 8-11bp which enables binding by the centromere binding factor 1(Cbf1p)." [PMID:11222754]	SO:0001493	"A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region composed of 8-11bp which enables binding by the centromere binding factor 1(Cbf1p)." [PMID:11222754]	46366	\N	\N	sequence	0	SO	centromere_DNA_Element_I	centromere_DNA_Element_I
SO:0000330	SO:0001493	\N	"Region of sequence similarity by descent from a common ancestor." [SO:ke]	SO:0001493	"A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region composed of 8-11bp which enables binding by the centromere binding factor 1(Cbf1p)." [PMID:11222754]	491108	\N	SOFA	sequence	1	SO	conserved_region	centromere_DNA_Element_I
SO:0001794	SO:0001493	\N	"A point centromere is a relatively small centromere (about 125 bp DNA) in discrete sequence, found in some yeast including S. cerevisiae." [PMID:7502067, SO:vw]	SO:0001493	"A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region composed of 8-11bp which enables binding by the centromere binding factor 1(Cbf1p)." [PMID:11222754]	491109	\N	\N	sequence	1	SO	point_centromere	centromere_DNA_Element_I
SO:0001410	SO:0000330	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001493	"A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region composed of 8-11bp which enables binding by the centromere binding factor 1(Cbf1p)." [PMID:11222754]	1073708	SOFA	SOFA	sequence	2	SO	experimental_feature	centromere_DNA_Element_I
SO:0000577	SO:0001794	\N	"A region of chromosome where the spindle fibers attach during mitosis and meiosis." [SO:ke]	SO:0001493	"A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region composed of 8-11bp which enables binding by the centromere binding factor 1(Cbf1p)." [PMID:11222754]	1073709	\N	SOFA	sequence	2	SO	centromere	centromere_DNA_Element_I
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001493	"A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region composed of 8-11bp which enables binding by the centromere binding factor 1(Cbf1p)." [PMID:11222754]	1904819	SOFA	SOFA	sequence	3	SO	region	centromere_DNA_Element_I
SO:0000628	SO:0000577	\N	"" []	SO:0001493	"A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region composed of 8-11bp which enables binding by the centromere binding factor 1(Cbf1p)." [PMID:11222754]	1904820	SOFA	SOFA	sequence	3	SO	chromosomal_structural_element	centromere_DNA_Element_I
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001493	"A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region composed of 8-11bp which enables binding by the centromere binding factor 1(Cbf1p)." [PMID:11222754]	6550281	SOFA	SOFA	sequence	9	SO	sequence_feature	centromere_DNA_Element_I
SO:0000830	SO:0000628	\N	"A region of a chromosome." [SO:ke]	SO:0001493	"A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region composed of 8-11bp which enables binding by the centromere binding factor 1(Cbf1p)." [PMID:11222754]	2929266	SOFA	SOFA	sequence	4	SO	chromosome_part	centromere_DNA_Element_I
SO:0000340	SO:0000830	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0001493	"A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region composed of 8-11bp which enables binding by the centromere binding factor 1(Cbf1p)." [PMID:11222754]	4002408	SOFA	SOFA	sequence	5	SO	chromosome	centromere_DNA_Element_I
SO:0001411	SO:0000830	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001493	"A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region composed of 8-11bp which enables binding by the centromere binding factor 1(Cbf1p)." [PMID:11222754]	4002409	SOFA	SOFA	sequence	5	SO	biological_region	centromere_DNA_Element_I
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001493	"A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region composed of 8-11bp which enables binding by the centromere binding factor 1(Cbf1p)." [PMID:11222754]	4966715	SOFA	SOFA	sequence	6	SO	replicon	centromere_DNA_Element_I
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001493	"A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region composed of 8-11bp which enables binding by the centromere binding factor 1(Cbf1p)." [PMID:11222754]	6311117	SOFA	SOFA	sequence	8	SO	region	centromere_DNA_Element_I
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001493	"A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region composed of 8-11bp which enables binding by the centromere binding factor 1(Cbf1p)." [PMID:11222754]	5741335	SOFA	SOFA	sequence	7	SO	biological_region	centromere_DNA_Element_I
SO:0001494	\N	\N	"A centromere DNA Element II (CDEII) is part a conserved region of the centromere, consisting of a consensus region that is AT-rich and ~ 75-100 bp in length." [PMID:11222754]	SO:0001494	"A centromere DNA Element II (CDEII) is part a conserved region of the centromere, consisting of a consensus region that is AT-rich and ~ 75-100 bp in length." [PMID:11222754]	46367	\N	\N	sequence	0	SO	centromere_DNA_Element_II	centromere_DNA_Element_II
SO:0000330	SO:0001494	\N	"Region of sequence similarity by descent from a common ancestor." [SO:ke]	SO:0001494	"A centromere DNA Element II (CDEII) is part a conserved region of the centromere, consisting of a consensus region that is AT-rich and ~ 75-100 bp in length." [PMID:11222754]	491110	\N	SOFA	sequence	1	SO	conserved_region	centromere_DNA_Element_II
SO:0001794	SO:0001494	\N	"A point centromere is a relatively small centromere (about 125 bp DNA) in discrete sequence, found in some yeast including S. cerevisiae." [PMID:7502067, SO:vw]	SO:0001494	"A centromere DNA Element II (CDEII) is part a conserved region of the centromere, consisting of a consensus region that is AT-rich and ~ 75-100 bp in length." [PMID:11222754]	491111	\N	\N	sequence	1	SO	point_centromere	centromere_DNA_Element_II
SO:0001410	SO:0000330	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001494	"A centromere DNA Element II (CDEII) is part a conserved region of the centromere, consisting of a consensus region that is AT-rich and ~ 75-100 bp in length." [PMID:11222754]	1073710	SOFA	SOFA	sequence	2	SO	experimental_feature	centromere_DNA_Element_II
SO:0000577	SO:0001794	\N	"A region of chromosome where the spindle fibers attach during mitosis and meiosis." [SO:ke]	SO:0001494	"A centromere DNA Element II (CDEII) is part a conserved region of the centromere, consisting of a consensus region that is AT-rich and ~ 75-100 bp in length." [PMID:11222754]	1073711	\N	SOFA	sequence	2	SO	centromere	centromere_DNA_Element_II
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001494	"A centromere DNA Element II (CDEII) is part a conserved region of the centromere, consisting of a consensus region that is AT-rich and ~ 75-100 bp in length." [PMID:11222754]	1904821	SOFA	SOFA	sequence	3	SO	region	centromere_DNA_Element_II
SO:0000628	SO:0000577	\N	"" []	SO:0001494	"A centromere DNA Element II (CDEII) is part a conserved region of the centromere, consisting of a consensus region that is AT-rich and ~ 75-100 bp in length." [PMID:11222754]	1904822	SOFA	SOFA	sequence	3	SO	chromosomal_structural_element	centromere_DNA_Element_II
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001494	"A centromere DNA Element II (CDEII) is part a conserved region of the centromere, consisting of a consensus region that is AT-rich and ~ 75-100 bp in length." [PMID:11222754]	6550282	SOFA	SOFA	sequence	9	SO	sequence_feature	centromere_DNA_Element_II
SO:0000830	SO:0000628	\N	"A region of a chromosome." [SO:ke]	SO:0001494	"A centromere DNA Element II (CDEII) is part a conserved region of the centromere, consisting of a consensus region that is AT-rich and ~ 75-100 bp in length." [PMID:11222754]	2929268	SOFA	SOFA	sequence	4	SO	chromosome_part	centromere_DNA_Element_II
SO:0000340	SO:0000830	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0001494	"A centromere DNA Element II (CDEII) is part a conserved region of the centromere, consisting of a consensus region that is AT-rich and ~ 75-100 bp in length." [PMID:11222754]	4002410	SOFA	SOFA	sequence	5	SO	chromosome	centromere_DNA_Element_II
SO:0001411	SO:0000830	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001494	"A centromere DNA Element II (CDEII) is part a conserved region of the centromere, consisting of a consensus region that is AT-rich and ~ 75-100 bp in length." [PMID:11222754]	4002411	SOFA	SOFA	sequence	5	SO	biological_region	centromere_DNA_Element_II
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001494	"A centromere DNA Element II (CDEII) is part a conserved region of the centromere, consisting of a consensus region that is AT-rich and ~ 75-100 bp in length." [PMID:11222754]	4966717	SOFA	SOFA	sequence	6	SO	replicon	centromere_DNA_Element_II
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001494	"A centromere DNA Element II (CDEII) is part a conserved region of the centromere, consisting of a consensus region that is AT-rich and ~ 75-100 bp in length." [PMID:11222754]	6311118	SOFA	SOFA	sequence	8	SO	region	centromere_DNA_Element_II
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001494	"A centromere DNA Element II (CDEII) is part a conserved region of the centromere, consisting of a consensus region that is AT-rich and ~ 75-100 bp in length." [PMID:11222754]	5741337	SOFA	SOFA	sequence	7	SO	biological_region	centromere_DNA_Element_II
SO:0001495	\N	\N	"A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region that consists of a 25-bp which enables binding by the centromere DNA binding factor 3 (CBF3) complex." [PMID:11222754]	SO:0001495	"A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region that consists of a 25-bp which enables binding by the centromere DNA binding factor 3 (CBF3) complex." [PMID:11222754]	46368	\N	\N	sequence	0	SO	centromere_DNA_Element_III	centromere_DNA_Element_III
SO:0000330	SO:0001495	\N	"Region of sequence similarity by descent from a common ancestor." [SO:ke]	SO:0001495	"A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region that consists of a 25-bp which enables binding by the centromere DNA binding factor 3 (CBF3) complex." [PMID:11222754]	491112	\N	SOFA	sequence	1	SO	conserved_region	centromere_DNA_Element_III
SO:0001794	SO:0001495	\N	"A point centromere is a relatively small centromere (about 125 bp DNA) in discrete sequence, found in some yeast including S. cerevisiae." [PMID:7502067, SO:vw]	SO:0001495	"A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region that consists of a 25-bp which enables binding by the centromere DNA binding factor 3 (CBF3) complex." [PMID:11222754]	491113	\N	\N	sequence	1	SO	point_centromere	centromere_DNA_Element_III
SO:0001410	SO:0000330	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001495	"A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region that consists of a 25-bp which enables binding by the centromere DNA binding factor 3 (CBF3) complex." [PMID:11222754]	1073712	SOFA	SOFA	sequence	2	SO	experimental_feature	centromere_DNA_Element_III
SO:0000577	SO:0001794	\N	"A region of chromosome where the spindle fibers attach during mitosis and meiosis." [SO:ke]	SO:0001495	"A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region that consists of a 25-bp which enables binding by the centromere DNA binding factor 3 (CBF3) complex." [PMID:11222754]	1073713	\N	SOFA	sequence	2	SO	centromere	centromere_DNA_Element_III
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001495	"A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region that consists of a 25-bp which enables binding by the centromere DNA binding factor 3 (CBF3) complex." [PMID:11222754]	1904823	SOFA	SOFA	sequence	3	SO	region	centromere_DNA_Element_III
SO:0000628	SO:0000577	\N	"" []	SO:0001495	"A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region that consists of a 25-bp which enables binding by the centromere DNA binding factor 3 (CBF3) complex." [PMID:11222754]	1904824	SOFA	SOFA	sequence	3	SO	chromosomal_structural_element	centromere_DNA_Element_III
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001495	"A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region that consists of a 25-bp which enables binding by the centromere DNA binding factor 3 (CBF3) complex." [PMID:11222754]	6550283	SOFA	SOFA	sequence	9	SO	sequence_feature	centromere_DNA_Element_III
SO:0000830	SO:0000628	\N	"A region of a chromosome." [SO:ke]	SO:0001495	"A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region that consists of a 25-bp which enables binding by the centromere DNA binding factor 3 (CBF3) complex." [PMID:11222754]	2929270	SOFA	SOFA	sequence	4	SO	chromosome_part	centromere_DNA_Element_III
SO:0000340	SO:0000830	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0001495	"A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region that consists of a 25-bp which enables binding by the centromere DNA binding factor 3 (CBF3) complex." [PMID:11222754]	4002412	SOFA	SOFA	sequence	5	SO	chromosome	centromere_DNA_Element_III
SO:0001411	SO:0000830	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001495	"A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region that consists of a 25-bp which enables binding by the centromere DNA binding factor 3 (CBF3) complex." [PMID:11222754]	4002413	SOFA	SOFA	sequence	5	SO	biological_region	centromere_DNA_Element_III
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001495	"A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region that consists of a 25-bp which enables binding by the centromere DNA binding factor 3 (CBF3) complex." [PMID:11222754]	4966719	SOFA	SOFA	sequence	6	SO	replicon	centromere_DNA_Element_III
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001495	"A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region that consists of a 25-bp which enables binding by the centromere DNA binding factor 3 (CBF3) complex." [PMID:11222754]	6311119	SOFA	SOFA	sequence	8	SO	region	centromere_DNA_Element_III
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001495	"A centromere DNA Element I (CDEI) is a conserved region, part of the centromere, consisting of a consensus region that consists of a 25-bp which enables binding by the centromere DNA binding factor 3 (CBF3) complex." [PMID:11222754]	5741339	SOFA	SOFA	sequence	7	SO	biological_region	centromere_DNA_Element_III
SO:0001496	\N	\N	"The telomeric repeat is a repeat region, part of the chromosome, which in yeast, is a G-rich terminal sequence of the form (TG(1-3))n or more precisely ((TG)(1-6)TG(2-3))n." [PMID:8720065]	SO:0001496	"The telomeric repeat is a repeat region, part of the chromosome, which in yeast, is a G-rich terminal sequence of the form (TG(1-3))n or more precisely ((TG)(1-6)TG(2-3))n." [PMID:8720065]	46369	\N	\N	sequence	0	SO	telomeric_repeat	telomeric_repeat
SO:0000624	SO:0001496	\N	"A specific structure at the end of a linear chromosome, required for the integrity and maintenance of the end." [SO:ma]	SO:0001496	"The telomeric repeat is a repeat region, part of the chromosome, which in yeast, is a G-rich terminal sequence of the form (TG(1-3))n or more precisely ((TG)(1-6)TG(2-3))n." [PMID:8720065]	491114	\N	SOFA	sequence	1	SO	telomere	telomeric_repeat
SO:0000657	SO:0001496	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0001496	"The telomeric repeat is a repeat region, part of the chromosome, which in yeast, is a G-rich terminal sequence of the form (TG(1-3))n or more precisely ((TG)(1-6)TG(2-3))n." [PMID:8720065]	491115	\N	SOFA	sequence	1	SO	repeat_region	telomeric_repeat
SO:0000628	SO:0000624	\N	"" []	SO:0001496	"The telomeric repeat is a repeat region, part of the chromosome, which in yeast, is a G-rich terminal sequence of the form (TG(1-3))n or more precisely ((TG)(1-6)TG(2-3))n." [PMID:8720065]	1073714	SOFA	SOFA	sequence	2	SO	chromosomal_structural_element	telomeric_repeat
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001496	"The telomeric repeat is a repeat region, part of the chromosome, which in yeast, is a G-rich terminal sequence of the form (TG(1-3))n or more precisely ((TG)(1-6)TG(2-3))n." [PMID:8720065]	1073715	SOFA	SOFA	sequence	2	SO	biological_region	telomeric_repeat
SO:0000830	SO:0000628	\N	"A region of a chromosome." [SO:ke]	SO:0001496	"The telomeric repeat is a repeat region, part of the chromosome, which in yeast, is a G-rich terminal sequence of the form (TG(1-3))n or more precisely ((TG)(1-6)TG(2-3))n." [PMID:8720065]	1904825	SOFA	SOFA	sequence	3	SO	chromosome_part	telomeric_repeat
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001496	"The telomeric repeat is a repeat region, part of the chromosome, which in yeast, is a G-rich terminal sequence of the form (TG(1-3))n or more precisely ((TG)(1-6)TG(2-3))n." [PMID:8720065]	5741341	SOFA	SOFA	sequence	7	SO	region	telomeric_repeat
SO:0000340	SO:0000830	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0001496	"The telomeric repeat is a repeat region, part of the chromosome, which in yeast, is a G-rich terminal sequence of the form (TG(1-3))n or more precisely ((TG)(1-6)TG(2-3))n." [PMID:8720065]	2929271	SOFA	SOFA	sequence	4	SO	chromosome	telomeric_repeat
SO:0001411	SO:0000830	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001496	"The telomeric repeat is a repeat region, part of the chromosome, which in yeast, is a G-rich terminal sequence of the form (TG(1-3))n or more precisely ((TG)(1-6)TG(2-3))n." [PMID:8720065]	2929272	SOFA	SOFA	sequence	4	SO	biological_region	telomeric_repeat
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001496	"The telomeric repeat is a repeat region, part of the chromosome, which in yeast, is a G-rich terminal sequence of the form (TG(1-3))n or more precisely ((TG)(1-6)TG(2-3))n." [PMID:8720065]	5817337	SOFA	SOFA	sequence	8	SO	sequence_feature	telomeric_repeat
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001496	"The telomeric repeat is a repeat region, part of the chromosome, which in yeast, is a G-rich terminal sequence of the form (TG(1-3))n or more precisely ((TG)(1-6)TG(2-3))n." [PMID:8720065]	4002414	SOFA	SOFA	sequence	5	SO	replicon	telomeric_repeat
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001496	"The telomeric repeat is a repeat region, part of the chromosome, which in yeast, is a G-rich terminal sequence of the form (TG(1-3))n or more precisely ((TG)(1-6)TG(2-3))n." [PMID:8720065]	4966721	SOFA	SOFA	sequence	6	SO	biological_region	telomeric_repeat
SO:0001497	\N	\N	"The X element is a conserved region, of the telomere, of ~475 bp that contains an ARS sequence and in most cases an Abf1p binding site." [http://www.yeastgenome.org/help/glossary.html#xelemcoresequence, PMID:7785338, PMID:8005434]	SO:0001497	"The X element is a conserved region, of the telomere, of ~475 bp that contains an ARS sequence and in most cases an Abf1p binding site." [http://www.yeastgenome.org/help/glossary.html#xelemcoresequence, PMID:7785338, PMID:8005434]	46370	\N	\N	sequence	0	SO	X_element	X_element
SO:0000330	SO:0001497	\N	"Region of sequence similarity by descent from a common ancestor." [SO:ke]	SO:0001497	"The X element is a conserved region, of the telomere, of ~475 bp that contains an ARS sequence and in most cases an Abf1p binding site." [http://www.yeastgenome.org/help/glossary.html#xelemcoresequence, PMID:7785338, PMID:8005434]	491116	\N	SOFA	sequence	1	SO	conserved_region	X_element
SO:0000624	SO:0001497	\N	"A specific structure at the end of a linear chromosome, required for the integrity and maintenance of the end." [SO:ma]	SO:0001497	"The X element is a conserved region, of the telomere, of ~475 bp that contains an ARS sequence and in most cases an Abf1p binding site." [http://www.yeastgenome.org/help/glossary.html#xelemcoresequence, PMID:7785338, PMID:8005434]	491117	\N	SOFA	sequence	1	SO	telomere	X_element
SO:0001410	SO:0000330	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001497	"The X element is a conserved region, of the telomere, of ~475 bp that contains an ARS sequence and in most cases an Abf1p binding site." [http://www.yeastgenome.org/help/glossary.html#xelemcoresequence, PMID:7785338, PMID:8005434]	1073716	SOFA	SOFA	sequence	2	SO	experimental_feature	X_element
SO:0000628	SO:0000624	\N	"" []	SO:0001497	"The X element is a conserved region, of the telomere, of ~475 bp that contains an ARS sequence and in most cases an Abf1p binding site." [http://www.yeastgenome.org/help/glossary.html#xelemcoresequence, PMID:7785338, PMID:8005434]	1073717	SOFA	SOFA	sequence	2	SO	chromosomal_structural_element	X_element
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001497	"The X element is a conserved region, of the telomere, of ~475 bp that contains an ARS sequence and in most cases an Abf1p binding site." [http://www.yeastgenome.org/help/glossary.html#xelemcoresequence, PMID:7785338, PMID:8005434]	1904827	SOFA	SOFA	sequence	3	SO	region	X_element
SO:0000830	SO:0000628	\N	"A region of a chromosome." [SO:ke]	SO:0001497	"The X element is a conserved region, of the telomere, of ~475 bp that contains an ARS sequence and in most cases an Abf1p binding site." [http://www.yeastgenome.org/help/glossary.html#xelemcoresequence, PMID:7785338, PMID:8005434]	1904828	SOFA	SOFA	sequence	3	SO	chromosome_part	X_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001497	"The X element is a conserved region, of the telomere, of ~475 bp that contains an ARS sequence and in most cases an Abf1p binding site." [http://www.yeastgenome.org/help/glossary.html#xelemcoresequence, PMID:7785338, PMID:8005434]	5996445	SOFA	SOFA	sequence	8	SO	sequence_feature	X_element
SO:0000340	SO:0000830	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0001497	"The X element is a conserved region, of the telomere, of ~475 bp that contains an ARS sequence and in most cases an Abf1p binding site." [http://www.yeastgenome.org/help/glossary.html#xelemcoresequence, PMID:7785338, PMID:8005434]	2929275	SOFA	SOFA	sequence	4	SO	chromosome	X_element
SO:0001411	SO:0000830	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001497	"The X element is a conserved region, of the telomere, of ~475 bp that contains an ARS sequence and in most cases an Abf1p binding site." [http://www.yeastgenome.org/help/glossary.html#xelemcoresequence, PMID:7785338, PMID:8005434]	2929276	SOFA	SOFA	sequence	4	SO	biological_region	X_element
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001497	"The X element is a conserved region, of the telomere, of ~475 bp that contains an ARS sequence and in most cases an Abf1p binding site." [http://www.yeastgenome.org/help/glossary.html#xelemcoresequence, PMID:7785338, PMID:8005434]	4002416	SOFA	SOFA	sequence	5	SO	replicon	X_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001497	"The X element is a conserved region, of the telomere, of ~475 bp that contains an ARS sequence and in most cases an Abf1p binding site." [http://www.yeastgenome.org/help/glossary.html#xelemcoresequence, PMID:7785338, PMID:8005434]	5741342	SOFA	SOFA	sequence	7	SO	region	X_element
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001497	"The X element is a conserved region, of the telomere, of ~475 bp that contains an ARS sequence and in most cases an Abf1p binding site." [http://www.yeastgenome.org/help/glossary.html#xelemcoresequence, PMID:7785338, PMID:8005434]	4966722	SOFA	SOFA	sequence	6	SO	biological_region	X_element
SO:0001498	\N	\N	"A region of sequence from the end of a YAC clone that may provide a highly specific marker." [SO:ke]	SO:0001498	"A region of sequence from the end of a YAC clone that may provide a highly specific marker." [SO:ke]	46371	\N	\N	sequence	0	SO	YAC_end	YAC_end
SO:0000150	SO:0001498	\N	"A sequence obtained from a single sequencing experiment. Typically a read is produced when a base calling program interprets information from a chromatogram trace file produced from a sequencing machine." [SO:rd]	SO:0001498	"A region of sequence from the end of a YAC clone that may provide a highly specific marker." [SO:ke]	491118	\N	SOFA	sequence	1	SO	read	YAC_end
SO:0000152	SO:0001498	\N	"Yeast Artificial Chromosome, a vector constructed from the telomeric, centromeric, and replication origin sequences needed for replication in yeast cells." [SO:ma]	SO:0001498	"A region of sequence from the end of a YAC clone that may provide a highly specific marker." [SO:ke]	491119	\N	\N	sequence	1	SO	YAC	YAC_end
SO:0000143	SO:0000150	\N	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0001498	"A region of sequence from the end of a YAC clone that may provide a highly specific marker." [SO:ke]	1073718	SOFA	SOFA	sequence	2	SO	assembly_component	YAC_end
SO:0000149	SO:0000150	\N	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	SO:0001498	"A region of sequence from the end of a YAC clone that may provide a highly specific marker." [SO:ke]	1073719	SOFA	SOFA	sequence	2	SO	contig	YAC_end
SO:0000440	SO:0000152	\N	"A replicon that has been modified to act as a vector for foreign sequence." [SO:ma]	SO:0001498	"A region of sequence from the end of a YAC clone that may provide a highly specific marker." [SO:ke]	1073720	\N	\N	sequence	2	SO	vector_replicon	YAC_end
SO:0001410	SO:0000143	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001498	"A region of sequence from the end of a YAC clone that may provide a highly specific marker." [SO:ke]	2929278	SOFA	SOFA	sequence	4	SO	experimental_feature	YAC_end
SO:0000143	SO:0000149	\N	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0001498	"A region of sequence from the end of a YAC clone that may provide a highly specific marker." [SO:ke]	1904830	SOFA	SOFA	sequence	3	SO	assembly_component	YAC_end
SO:0000148	SO:0000149	\N	"One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's." [SO:ls]	SO:0001498	"A region of sequence from the end of a YAC clone that may provide a highly specific marker." [SO:ke]	1904831	SOFA	SOFA	sequence	3	SO	supercontig	YAC_end
SO:0000353	SO:0000149	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001498	"A region of sequence from the end of a YAC clone that may provide a highly specific marker." [SO:ke]	1904832	SOFA	SOFA	sequence	3	SO	sequence_assembly	YAC_end
SO:0000151	SO:0000440	\N	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0001498	"A region of sequence from the end of a YAC clone that may provide a highly specific marker." [SO:ke]	1904833	\N	SOFA	sequence	3	SO	clone	YAC_end
SO:0001235	SO:0000440	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001498	"A region of sequence from the end of a YAC clone that may provide a highly specific marker." [SO:ke]	1904834	\N	SOFA	sequence	3	SO	replicon	YAC_end
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001498	"A region of sequence from the end of a YAC clone that may provide a highly specific marker." [SO:ke]	6469764	SOFA	SOFA	sequence	9	SO	region	YAC_end
SO:0000719	SO:0000148	\N	"An ordered and oriented set of scaffolds based on somewhat weaker sets of inferential evidence such as one set of mate pair reads together with supporting evidence from ESTs or location of markers from SNP or microsatellite maps, or cytogenetic localization of contained markers." [FB:WG]	SO:0001498	"A region of sequence from the end of a YAC clone that may provide a highly specific marker." [SO:ke]	2929279	SOFA	SOFA	sequence	4	SO	ultracontig	YAC_end
SO:0001876	SO:0000148	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001498	"A region of sequence from the end of a YAC clone that may provide a highly specific marker." [SO:ke]	2929280	SOFA	\N	sequence	4	SO	partial_genomic_sequence_assembly	YAC_end
SO:0001248	SO:0000353	\N	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0001498	"A region of sequence from the end of a YAC clone that may provide a highly specific marker." [SO:ke]	5407480	SOFA	SOFA	sequence	7	SO	assembly	YAC_end
SO:0000695	SO:0000151	\N	"A sequence used in experiment." [SO:ke]	SO:0001498	"A region of sequence from the end of a YAC clone that may provide a highly specific marker." [SO:ke]	2929282	SOFA	SOFA	sequence	4	SO	reagent	YAC_end
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001498	"A region of sequence from the end of a YAC clone that may provide a highly specific marker." [SO:ke]	2929283	SOFA	SOFA	sequence	4	SO	biological_region	YAC_end
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001498	"A region of sequence from the end of a YAC clone that may provide a highly specific marker." [SO:ke]	6778561	SOFA	SOFA	sequence	10	SO	sequence_feature	YAC_end
SO:0001876	SO:0000719	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001498	"A region of sequence from the end of a YAC clone that may provide a highly specific marker." [SO:ke]	4002419	SOFA	\N	sequence	5	SO	partial_genomic_sequence_assembly	YAC_end
SO:0000353	SO:0001876	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001498	"A region of sequence from the end of a YAC clone that may provide a highly specific marker." [SO:ke]	4966724	\N	SOFA	sequence	6	SO	sequence_assembly	YAC_end
SO:0001410	SO:0001248	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001498	"A region of sequence from the end of a YAC clone that may provide a highly specific marker." [SO:ke]	5876453	SOFA	SOFA	sequence	8	SO	experimental_feature	YAC_end
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001498	"A region of sequence from the end of a YAC clone that may provide a highly specific marker." [SO:ke]	4002422	SOFA	SOFA	sequence	5	SO	biomaterial_region	YAC_end
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001498	"A region of sequence from the end of a YAC clone that may provide a highly specific marker." [SO:ke]	4002423	SOFA	SOFA	sequence	5	SO	region	YAC_end
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001498	"A region of sequence from the end of a YAC clone that may provide a highly specific marker." [SO:ke]	4966727	SOFA	SOFA	sequence	6	SO	region	YAC_end
SO:0001499	\N	\N	"The status of whole genome sequence." [DOI:10.1126]	SO:0001499	"The status of whole genome sequence." [DOI:10.1126]	46372	\N	\N	sequence	0	SO	whole_genome_sequence_status	whole_genome_sequence_status
SO:0000905	SO:0001499	\N	"An attribute describing the status of a feature, based on the available evidence." [SO:ke]	SO:0001499	"The status of whole genome sequence." [DOI:10.1126]	491120	\N	\N	sequence	1	SO	status	whole_genome_sequence_status
SO:0000733	SO:0000905	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001499	"The status of whole genome sequence." [DOI:10.1126]	1073721	\N	\N	sequence	2	SO	feature_attribute	whole_genome_sequence_status
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001499	"The status of whole genome sequence." [DOI:10.1126]	1904835	\N	\N	sequence	3	SO	sequence_attribute	whole_genome_sequence_status
SO:0001500	\N	\N	"A biological_region characterized as a single heritable trait in a phenotype screen. The heritable phenotype may be mapped to a chromosome but generally has not been characterized to a specific gene locus." [JAX:hdene]	SO:0001500	"A biological_region characterized as a single heritable trait in a phenotype screen. The heritable phenotype may be mapped to a chromosome but generally has not been characterized to a specific gene locus." [JAX:hdene]	46373	\N	\N	sequence	0	SO	heritable_phenotypic_marker	heritable_phenotypic_marker
SO:0001645	SO:0001500	\N	"A measurable sequence feature that varies within a population." [SO:db]	SO:0001500	"A biological_region characterized as a single heritable trait in a phenotype screen. The heritable phenotype may be mapped to a chromosome but generally has not been characterized to a specific gene locus." [JAX:hdene]	491121	\N	\N	sequence	1	SO	genetic_marker	heritable_phenotypic_marker
SO:0001411	SO:0001645	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001500	"A biological_region characterized as a single heritable trait in a phenotype screen. The heritable phenotype may be mapped to a chromosome but generally has not been characterized to a specific gene locus." [JAX:hdene]	1073722	\N	SOFA	sequence	2	SO	biological_region	heritable_phenotypic_marker
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001500	"A biological_region characterized as a single heritable trait in a phenotype screen. The heritable phenotype may be mapped to a chromosome but generally has not been characterized to a specific gene locus." [JAX:hdene]	1904836	SOFA	SOFA	sequence	3	SO	region	heritable_phenotypic_marker
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001500	"A biological_region characterized as a single heritable trait in a phenotype screen. The heritable phenotype may be mapped to a chromosome but generally has not been characterized to a specific gene locus." [JAX:hdene]	2929284	SOFA	SOFA	sequence	4	SO	sequence_feature	heritable_phenotypic_marker
SO:0001501	\N	\N	"A collection of peptide sequences." [BBOP:nlw]	SO:0001501	"A collection of peptide sequences." [BBOP:nlw]	46374	\N	\N	sequence	0	SO	peptide_collection	peptide_collection
SO:0001260	SO:0001501	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0001501	"A collection of peptide sequences." [BBOP:nlw]	491122	\N	\N	sequence	1	SO	sequence_collection	peptide_collection
SO:0001502	\N	\N	"An experimental feature with high sequence identity to another sequence." [SO:ke]	SO:0001502	"An experimental feature with high sequence identity to another sequence." [SO:ke]	46375	\N	\N	sequence	0	SO	high_identity_region	high_identity_region
SO:0001410	SO:0001502	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001502	"An experimental feature with high sequence identity to another sequence." [SO:ke]	491123	\N	SOFA	sequence	1	SO	experimental_feature	high_identity_region
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001502	"An experimental feature with high sequence identity to another sequence." [SO:ke]	1073723	SOFA	SOFA	sequence	2	SO	region	high_identity_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001502	"An experimental feature with high sequence identity to another sequence." [SO:ke]	1904837	SOFA	SOFA	sequence	3	SO	sequence_feature	high_identity_region
SO:0001503	\N	\N	"A transcript for which no open reading frame has been identified and for which no other function has been determined." [MGI:hdeen]	SO:0001503	"A transcript for which no open reading frame has been identified and for which no other function has been determined." [MGI:hdeen]	46376	\N	\N	sequence	0	SO	processed_transcript	processed_transcript
SO:0000673	SO:0001503	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001503	"A transcript for which no open reading frame has been identified and for which no other function has been determined." [MGI:hdeen]	491124	\N	SOFA	sequence	1	SO	transcript	processed_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001503	"A transcript for which no open reading frame has been identified and for which no other function has been determined." [MGI:hdeen]	1073724	SOFA	SOFA	sequence	2	SO	gene_member_region	processed_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001503	"A transcript for which no open reading frame has been identified and for which no other function has been determined." [MGI:hdeen]	1904838	SOFA	SOFA	sequence	3	SO	biological_region	processed_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001503	"A transcript for which no open reading frame has been identified and for which no other function has been determined." [MGI:hdeen]	2929285	SOFA	SOFA	sequence	4	SO	region	processed_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001503	"A transcript for which no open reading frame has been identified and for which no other function has been determined." [MGI:hdeen]	4002424	SOFA	SOFA	sequence	5	SO	sequence_feature	processed_transcript
SO:0001504	\N	\N	"A chromosome variation derived from an event during meiosis." [SO:ke]	SO:0001504	"A chromosome variation derived from an event during meiosis." [SO:ke]	46377	\N	\N	sequence	0	SO	assortment_derived_variation	assortment_derived_variation
SO:0000240	SO:0001504	\N	"" []	SO:0001504	"A chromosome variation derived from an event during meiosis." [SO:ke]	491125	\N	\N	sequence	1	SO	chromosome_variation	assortment_derived_variation
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0001504	"A chromosome variation derived from an event during meiosis." [SO:ke]	1073725	\N	\N	sequence	2	SO	variant_collection	assortment_derived_variation
SO:0001524	SO:0000240	\N	"" []	SO:0001504	"A chromosome variation derived from an event during meiosis." [SO:ke]	1073726	\N	\N	sequence	2	SO	chromosomally_aberrant_genome	assortment_derived_variation
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0001504	"A chromosome variation derived from an event during meiosis." [SO:ke]	1904839	\N	\N	sequence	3	SO	sequence_collection	assortment_derived_variation
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0001504	"A chromosome variation derived from an event during meiosis." [SO:ke]	1904840	\N	\N	sequence	3	SO	variant_genome	assortment_derived_variation
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0001504	"A chromosome variation derived from an event during meiosis." [SO:ke]	2929286	\N	\N	sequence	4	SO	genome	assortment_derived_variation
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0001504	"A chromosome variation derived from an event during meiosis." [SO:ke]	4002425	\N	\N	sequence	5	SO	sequence_collection	assortment_derived_variation
SO:0001505	\N	\N	"A collection of sequences (often chromosomes) taken as the standard for a given organism and genome assembly." [SO:ke]	SO:0001505	"A collection of sequences (often chromosomes) taken as the standard for a given organism and genome assembly." [SO:ke]	46378	\N	\N	sequence	0	SO	reference_genome	reference_genome
SO:0001026	SO:0001505	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0001505	"A collection of sequences (often chromosomes) taken as the standard for a given organism and genome assembly." [SO:ke]	491126	\N	\N	sequence	1	SO	genome	reference_genome
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0001505	"A collection of sequences (often chromosomes) taken as the standard for a given organism and genome assembly." [SO:ke]	1073727	\N	\N	sequence	2	SO	sequence_collection	reference_genome
SO:0001506	\N	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0001506	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	46379	\N	\N	sequence	0	SO	variant_genome	variant_genome
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0001506	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	491127	\N	\N	sequence	1	SO	genome	variant_genome
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0001506	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	1073728	\N	\N	sequence	2	SO	sequence_collection	variant_genome
SO:0001507	\N	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0001507	"A collection of one or more sequences of an individual." [SO:ke]	46380	\N	\N	sequence	0	SO	variant_collection	variant_collection
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0001507	"A collection of one or more sequences of an individual." [SO:ke]	491128	\N	\N	sequence	1	SO	sequence_collection	variant_collection
SO:0001508	\N	\N	"" []	SO:0001508	"" []	46381	\N	\N	sequence	0	SO	alteration_attribute	alteration_attribute
SO:0000733	SO:0001508	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001508	"" []	491129	\N	\N	sequence	1	SO	feature_attribute	alteration_attribute
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001508	"" []	1073729	\N	\N	sequence	2	SO	sequence_attribute	alteration_attribute
SO:0001509	\N	\N	"" []	SO:0001509	"" []	46382	\N	\N	sequence	0	SO	chromosomal_variation_attribute	chromosomal_variation_attribute
SO:0001508	SO:0001509	\N	"" []	SO:0001509	"" []	491130	\N	\N	sequence	1	SO	alteration_attribute	chromosomal_variation_attribute
SO:0000733	SO:0001508	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001509	"" []	1073730	\N	\N	sequence	2	SO	feature_attribute	chromosomal_variation_attribute
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001509	"" []	1904841	\N	\N	sequence	3	SO	sequence_attribute	chromosomal_variation_attribute
SO:0001510	\N	\N	"" []	SO:0001510	"" []	46383	\N	\N	sequence	0	SO	intrachromosomal	intrachromosomal
SO:0001509	SO:0001510	\N	"" []	SO:0001510	"" []	491131	\N	\N	sequence	1	SO	chromosomal_variation_attribute	intrachromosomal
SO:0001508	SO:0001509	\N	"" []	SO:0001510	"" []	1073731	\N	\N	sequence	2	SO	alteration_attribute	intrachromosomal
SO:0000733	SO:0001508	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001510	"" []	1904842	\N	\N	sequence	3	SO	feature_attribute	intrachromosomal
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001510	"" []	2929287	\N	\N	sequence	4	SO	sequence_attribute	intrachromosomal
SO:0001511	\N	\N	"" []	SO:0001511	"" []	46384	\N	\N	sequence	0	SO	interchromosomal	interchromosomal
SO:0001509	SO:0001511	\N	"" []	SO:0001511	"" []	491132	\N	\N	sequence	1	SO	chromosomal_variation_attribute	interchromosomal
SO:0001508	SO:0001509	\N	"" []	SO:0001511	"" []	1073732	\N	\N	sequence	2	SO	alteration_attribute	interchromosomal
SO:0000733	SO:0001508	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001511	"" []	1904843	\N	\N	sequence	3	SO	feature_attribute	interchromosomal
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001511	"" []	2929288	\N	\N	sequence	4	SO	sequence_attribute	interchromosomal
SO:0001512	\N	\N	"A quality of a chromosomal insertion,." [SO:ke]	SO:0001512	"A quality of a chromosomal insertion,." [SO:ke]	46385	\N	\N	sequence	0	SO	insertion_attribute	insertion_attribute
SO:0001508	SO:0001512	\N	"" []	SO:0001512	"A quality of a chromosomal insertion,." [SO:ke]	491133	\N	\N	sequence	1	SO	alteration_attribute	insertion_attribute
SO:0000733	SO:0001508	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001512	"A quality of a chromosomal insertion,." [SO:ke]	1073733	\N	\N	sequence	2	SO	feature_attribute	insertion_attribute
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001512	"A quality of a chromosomal insertion,." [SO:ke]	1904844	\N	\N	sequence	3	SO	sequence_attribute	insertion_attribute
SO:0001513	\N	\N	"" []	SO:0001513	"" []	46386	\N	\N	sequence	0	SO	tandem	tandem
SO:0001512	SO:0001513	\N	"A quality of a chromosomal insertion,." [SO:ke]	SO:0001513	"" []	491134	\N	\N	sequence	1	SO	insertion_attribute	tandem
SO:0001508	SO:0001512	\N	"" []	SO:0001513	"" []	1073734	\N	\N	sequence	2	SO	alteration_attribute	tandem
SO:0000733	SO:0001508	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001513	"" []	1904845	\N	\N	sequence	3	SO	feature_attribute	tandem
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001513	"" []	2929289	\N	\N	sequence	4	SO	sequence_attribute	tandem
SO:0001514	\N	\N	"A quality of an insertion where the insert is not in a cytologically inverted orientation." [SO:ke]	SO:0001514	"A quality of an insertion where the insert is not in a cytologically inverted orientation." [SO:ke]	46387	\N	\N	sequence	0	SO	direct	direct
SO:0001512	SO:0001514	\N	"A quality of a chromosomal insertion,." [SO:ke]	SO:0001514	"A quality of an insertion where the insert is not in a cytologically inverted orientation." [SO:ke]	491135	\N	\N	sequence	1	SO	insertion_attribute	direct
SO:0001508	SO:0001512	\N	"" []	SO:0001514	"A quality of an insertion where the insert is not in a cytologically inverted orientation." [SO:ke]	1073735	\N	\N	sequence	2	SO	alteration_attribute	direct
SO:0000733	SO:0001508	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001514	"A quality of an insertion where the insert is not in a cytologically inverted orientation." [SO:ke]	1904846	\N	\N	sequence	3	SO	feature_attribute	direct
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001514	"A quality of an insertion where the insert is not in a cytologically inverted orientation." [SO:ke]	2929290	\N	\N	sequence	4	SO	sequence_attribute	direct
SO:0001515	\N	\N	"A quality of an insertion where the insert is in a cytologically inverted orientation." [SO:ke]	SO:0001515	"A quality of an insertion where the insert is in a cytologically inverted orientation." [SO:ke]	46388	\N	\N	sequence	0	SO	inverted	inverted
SO:0001512	SO:0001515	\N	"A quality of a chromosomal insertion,." [SO:ke]	SO:0001515	"A quality of an insertion where the insert is in a cytologically inverted orientation." [SO:ke]	491136	\N	\N	sequence	1	SO	insertion_attribute	inverted
SO:0001508	SO:0001512	\N	"" []	SO:0001515	"A quality of an insertion where the insert is in a cytologically inverted orientation." [SO:ke]	1073736	\N	\N	sequence	2	SO	alteration_attribute	inverted
SO:0000733	SO:0001508	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001515	"A quality of an insertion where the insert is in a cytologically inverted orientation." [SO:ke]	1904847	\N	\N	sequence	3	SO	feature_attribute	inverted
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001515	"A quality of an insertion where the insert is in a cytologically inverted orientation." [SO:ke]	2929291	\N	\N	sequence	4	SO	sequence_attribute	inverted
SO:0001516	\N	\N	"The quality of a duplication where the new region exists independently of the original." [SO:ke]	SO:0001516	"The quality of a duplication where the new region exists independently of the original." [SO:ke]	46389	\N	\N	sequence	0	SO	free	free
SO:0001523	SO:0001516	\N	"" []	SO:0001516	"The quality of a duplication where the new region exists independently of the original." [SO:ke]	491137	\N	\N	sequence	1	SO	duplication_attribute	free
SO:0001508	SO:0001523	\N	"" []	SO:0001516	"The quality of a duplication where the new region exists independently of the original." [SO:ke]	1073737	\N	\N	sequence	2	SO	alteration_attribute	free
SO:0000733	SO:0001508	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001516	"The quality of a duplication where the new region exists independently of the original." [SO:ke]	1904848	\N	\N	sequence	3	SO	feature_attribute	free
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001516	"The quality of a duplication where the new region exists independently of the original." [SO:ke]	2929292	\N	\N	sequence	4	SO	sequence_attribute	free
SO:0001517	\N	\N	"" []	SO:0001517	"" []	46390	\N	\N	sequence	0	SO	inversion_attribute	inversion_attribute
SO:0001508	SO:0001517	\N	"" []	SO:0001517	"" []	491138	\N	\N	sequence	1	SO	alteration_attribute	inversion_attribute
SO:0000733	SO:0001508	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001517	"" []	1073738	\N	\N	sequence	2	SO	feature_attribute	inversion_attribute
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001517	"" []	1904849	\N	\N	sequence	3	SO	sequence_attribute	inversion_attribute
SO:0001518	\N	\N	"" []	SO:0001518	"" []	46391	\N	\N	sequence	0	SO	pericentric	pericentric
SO:0001517	SO:0001518	\N	"" []	SO:0001518	"" []	491139	\N	\N	sequence	1	SO	inversion_attribute	pericentric
SO:0001508	SO:0001517	\N	"" []	SO:0001518	"" []	1073739	\N	\N	sequence	2	SO	alteration_attribute	pericentric
SO:0000733	SO:0001508	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001518	"" []	1904850	\N	\N	sequence	3	SO	feature_attribute	pericentric
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001518	"" []	2929293	\N	\N	sequence	4	SO	sequence_attribute	pericentric
SO:0001519	\N	\N	"" []	SO:0001519	"" []	46392	\N	\N	sequence	0	SO	paracentric	paracentric
SO:0001517	SO:0001519	\N	"" []	SO:0001519	"" []	491140	\N	\N	sequence	1	SO	inversion_attribute	paracentric
SO:0001508	SO:0001517	\N	"" []	SO:0001519	"" []	1073740	\N	\N	sequence	2	SO	alteration_attribute	paracentric
SO:0000733	SO:0001508	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001519	"" []	1904851	\N	\N	sequence	3	SO	feature_attribute	paracentric
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001519	"" []	2929294	\N	\N	sequence	4	SO	sequence_attribute	paracentric
SO:0001520	\N	\N	"" []	SO:0001520	"" []	46393	\N	\N	sequence	0	SO	translocaton_attribute	translocaton_attribute
SO:0001508	SO:0001520	\N	"" []	SO:0001520	"" []	491141	\N	\N	sequence	1	SO	alteration_attribute	translocaton_attribute
SO:0000733	SO:0001508	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001520	"" []	1073741	\N	\N	sequence	2	SO	feature_attribute	translocaton_attribute
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001520	"" []	1904852	\N	\N	sequence	3	SO	sequence_attribute	translocaton_attribute
SO:0001521	\N	\N	"" []	SO:0001521	"" []	46394	\N	\N	sequence	0	SO	reciprocal	reciprocal
SO:0001520	SO:0001521	\N	"" []	SO:0001521	"" []	491142	\N	\N	sequence	1	SO	translocaton_attribute	reciprocal
SO:0001508	SO:0001520	\N	"" []	SO:0001521	"" []	1073742	\N	\N	sequence	2	SO	alteration_attribute	reciprocal
SO:0000733	SO:0001508	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001521	"" []	1904853	\N	\N	sequence	3	SO	feature_attribute	reciprocal
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001521	"" []	2929295	\N	\N	sequence	4	SO	sequence_attribute	reciprocal
SO:0001522	\N	\N	"" []	SO:0001522	"" []	46395	\N	\N	sequence	0	SO	insertional	insertional
SO:0001520	SO:0001522	\N	"" []	SO:0001522	"" []	491143	\N	\N	sequence	1	SO	translocaton_attribute	insertional
SO:0001508	SO:0001520	\N	"" []	SO:0001522	"" []	1073743	\N	\N	sequence	2	SO	alteration_attribute	insertional
SO:0000733	SO:0001508	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001522	"" []	1904854	\N	\N	sequence	3	SO	feature_attribute	insertional
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001522	"" []	2929296	\N	\N	sequence	4	SO	sequence_attribute	insertional
SO:0001523	\N	\N	"" []	SO:0001523	"" []	46396	\N	\N	sequence	0	SO	duplication_attribute	duplication_attribute
SO:0001508	SO:0001523	\N	"" []	SO:0001523	"" []	491144	\N	\N	sequence	1	SO	alteration_attribute	duplication_attribute
SO:0000733	SO:0001508	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001523	"" []	1073744	\N	\N	sequence	2	SO	feature_attribute	duplication_attribute
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001523	"" []	1904855	\N	\N	sequence	3	SO	sequence_attribute	duplication_attribute
SO:0001524	\N	\N	"" []	SO:0001524	"" []	46397	\N	\N	sequence	0	SO	chromosomally_aberrant_genome	chromosomally_aberrant_genome
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0001524	"" []	491145	\N	\N	sequence	1	SO	variant_genome	chromosomally_aberrant_genome
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0001524	"" []	1073745	\N	\N	sequence	2	SO	genome	chromosomally_aberrant_genome
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0001524	"" []	1904856	\N	\N	sequence	3	SO	sequence_collection	chromosomally_aberrant_genome
SO:0001525	\N	\N	"A region of sequence where the final nucleotide assignment differs from the original assembly due to an improvement that replaces a mistake." [SO:ke]	SO:0001525	"A region of sequence where the final nucleotide assignment differs from the original assembly due to an improvement that replaces a mistake." [SO:ke]	46398	\N	\N	sequence	0	SO	assembly_error_correction	assembly_error_correction
SO:0000413	SO:0001525	\N	"A region where the sequence differs from that of a specified sequence." [SO:ke]	SO:0001525	"A region of sequence where the final nucleotide assignment differs from the original assembly due to an improvement that replaces a mistake." [SO:ke]	491146	\N	SOFA	sequence	1	SO	sequence_difference	assembly_error_correction
SO:0000700	SO:0000413	\N	"A comment about the sequence." [SO:ke]	SO:0001525	"A region of sequence where the final nucleotide assignment differs from the original assembly due to an improvement that replaces a mistake." [SO:ke]	1073746	SOFA	SOFA	sequence	2	SO	remark	assembly_error_correction
SO:0001410	SO:0000700	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001525	"A region of sequence where the final nucleotide assignment differs from the original assembly due to an improvement that replaces a mistake." [SO:ke]	1904857	SOFA	SOFA	sequence	3	SO	experimental_feature	assembly_error_correction
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001525	"A region of sequence where the final nucleotide assignment differs from the original assembly due to an improvement that replaces a mistake." [SO:ke]	2929297	SOFA	SOFA	sequence	4	SO	region	assembly_error_correction
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001525	"A region of sequence where the final nucleotide assignment differs from the original assembly due to an improvement that replaces a mistake." [SO:ke]	4002426	SOFA	SOFA	sequence	5	SO	sequence_feature	assembly_error_correction
SO:0001526	\N	\N	"A region of sequence where the final nucleotide assignment is different from that given by the base caller due to an improvement that replaces a mistake." [SO:ke]	SO:0001526	"A region of sequence where the final nucleotide assignment is different from that given by the base caller due to an improvement that replaces a mistake." [SO:ke]	46399	\N	\N	sequence	0	SO	base_call_error_correction	base_call_error_correction
SO:0000413	SO:0001526	\N	"A region where the sequence differs from that of a specified sequence." [SO:ke]	SO:0001526	"A region of sequence where the final nucleotide assignment is different from that given by the base caller due to an improvement that replaces a mistake." [SO:ke]	491147	\N	SOFA	sequence	1	SO	sequence_difference	base_call_error_correction
SO:0000700	SO:0000413	\N	"A comment about the sequence." [SO:ke]	SO:0001526	"A region of sequence where the final nucleotide assignment is different from that given by the base caller due to an improvement that replaces a mistake." [SO:ke]	1073747	SOFA	SOFA	sequence	2	SO	remark	base_call_error_correction
SO:0001410	SO:0000700	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001526	"A region of sequence where the final nucleotide assignment is different from that given by the base caller due to an improvement that replaces a mistake." [SO:ke]	1904858	SOFA	SOFA	sequence	3	SO	experimental_feature	base_call_error_correction
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001526	"A region of sequence where the final nucleotide assignment is different from that given by the base caller due to an improvement that replaces a mistake." [SO:ke]	2929298	SOFA	SOFA	sequence	4	SO	region	base_call_error_correction
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001526	"A region of sequence where the final nucleotide assignment is different from that given by the base caller due to an improvement that replaces a mistake." [SO:ke]	4002427	SOFA	SOFA	sequence	5	SO	sequence_feature	base_call_error_correction
SO:0001527	\N	SOFA	"A region of peptide sequence used to target the polypeptide molecule to a specific organelle." [SO:ke]	SO:0001527	"A region of peptide sequence used to target the polypeptide molecule to a specific organelle." [SO:ke]	46400	\N	SOFA	sequence	0	SO	peptide_localization_signal	peptide_localization_signal
SO:0000839	SO:0001527	SOFA	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001527	"A region of peptide sequence used to target the polypeptide molecule to a specific organelle." [SO:ke]	491148	SOFA	biosapiens,SOFA	sequence	1	SO	polypeptide_region	peptide_localization_signal
SO:0000104	SO:0000839	SOFA	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001527	"A region of peptide sequence used to target the polypeptide molecule to a specific organelle." [SO:ke]	1073748	biosapiens,SOFA	SOFA	sequence	2	SO	polypeptide	peptide_localization_signal
SO:0001411	SO:0000839	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001527	"A region of peptide sequence used to target the polypeptide molecule to a specific organelle." [SO:ke]	1073749	biosapiens,SOFA	SOFA	sequence	2	SO	biological_region	peptide_localization_signal
SO:0001411	SO:0000104	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001527	"A region of peptide sequence used to target the polypeptide molecule to a specific organelle." [SO:ke]	1904859	SOFA	SOFA	sequence	3	SO	biological_region	peptide_localization_signal
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001527	"A region of peptide sequence used to target the polypeptide molecule to a specific organelle." [SO:ke]	2929299	SOFA	SOFA	sequence	4	SO	region	peptide_localization_signal
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001527	"A region of peptide sequence used to target the polypeptide molecule to a specific organelle." [SO:ke]	3174000	SOFA	SOFA	sequence	5	SO	sequence_feature	peptide_localization_signal
SO:0001528	\N	\N	"A polypeptide region that targets a polypeptide to the nucleus." [SO:ke]	SO:0001528	"A polypeptide region that targets a polypeptide to the nucleus." [SO:ke]	46401	\N	\N	sequence	0	SO	nuclear_localization_signal	nuclear_localization_signal
SO:0001527	SO:0001528	\N	"A region of peptide sequence used to target the polypeptide molecule to a specific organelle." [SO:ke]	SO:0001528	"A polypeptide region that targets a polypeptide to the nucleus." [SO:ke]	491149	\N	SOFA	sequence	1	SO	peptide_localization_signal	nuclear_localization_signal
SO:0000839	SO:0001527	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001528	"A polypeptide region that targets a polypeptide to the nucleus." [SO:ke]	1073750	SOFA	biosapiens,SOFA	sequence	2	SO	polypeptide_region	nuclear_localization_signal
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001528	"A polypeptide region that targets a polypeptide to the nucleus." [SO:ke]	1904861	biosapiens,SOFA	SOFA	sequence	3	SO	polypeptide	nuclear_localization_signal
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001528	"A polypeptide region that targets a polypeptide to the nucleus." [SO:ke]	1904862	biosapiens,SOFA	SOFA	sequence	3	SO	biological_region	nuclear_localization_signal
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001528	"A polypeptide region that targets a polypeptide to the nucleus." [SO:ke]	2929301	SOFA	SOFA	sequence	4	SO	biological_region	nuclear_localization_signal
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001528	"A polypeptide region that targets a polypeptide to the nucleus." [SO:ke]	4002428	SOFA	SOFA	sequence	5	SO	region	nuclear_localization_signal
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001528	"A polypeptide region that targets a polypeptide to the nucleus." [SO:ke]	4385848	SOFA	SOFA	sequence	6	SO	sequence_feature	nuclear_localization_signal
SO:0001529	\N	\N	"A polypeptide region that targets a polypeptide to the endosome." [SO:ke]	SO:0001529	"A polypeptide region that targets a polypeptide to the endosome." [SO:ke]	46402	\N	\N	sequence	0	SO	endosomal_localization_signal	endosomal_localization_signal
SO:0001527	SO:0001529	\N	"A region of peptide sequence used to target the polypeptide molecule to a specific organelle." [SO:ke]	SO:0001529	"A polypeptide region that targets a polypeptide to the endosome." [SO:ke]	491150	\N	SOFA	sequence	1	SO	peptide_localization_signal	endosomal_localization_signal
SO:0000839	SO:0001527	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001529	"A polypeptide region that targets a polypeptide to the endosome." [SO:ke]	1073751	SOFA	biosapiens,SOFA	sequence	2	SO	polypeptide_region	endosomal_localization_signal
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001529	"A polypeptide region that targets a polypeptide to the endosome." [SO:ke]	1904863	biosapiens,SOFA	SOFA	sequence	3	SO	polypeptide	endosomal_localization_signal
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001529	"A polypeptide region that targets a polypeptide to the endosome." [SO:ke]	1904864	biosapiens,SOFA	SOFA	sequence	3	SO	biological_region	endosomal_localization_signal
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001529	"A polypeptide region that targets a polypeptide to the endosome." [SO:ke]	2929303	SOFA	SOFA	sequence	4	SO	biological_region	endosomal_localization_signal
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001529	"A polypeptide region that targets a polypeptide to the endosome." [SO:ke]	4002430	SOFA	SOFA	sequence	5	SO	region	endosomal_localization_signal
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001529	"A polypeptide region that targets a polypeptide to the endosome." [SO:ke]	4385849	SOFA	SOFA	sequence	6	SO	sequence_feature	endosomal_localization_signal
SO:0001530	\N	\N	"A polypeptide region that targets a polypeptide to the lysosome." [SO:ke]	SO:0001530	"A polypeptide region that targets a polypeptide to the lysosome." [SO:ke]	46403	\N	\N	sequence	0	SO	lysosomal_localization_signal	lysosomal_localization_signal
SO:0001527	SO:0001530	\N	"A region of peptide sequence used to target the polypeptide molecule to a specific organelle." [SO:ke]	SO:0001530	"A polypeptide region that targets a polypeptide to the lysosome." [SO:ke]	491151	\N	SOFA	sequence	1	SO	peptide_localization_signal	lysosomal_localization_signal
SO:0000839	SO:0001527	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001530	"A polypeptide region that targets a polypeptide to the lysosome." [SO:ke]	1073752	SOFA	biosapiens,SOFA	sequence	2	SO	polypeptide_region	lysosomal_localization_signal
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001530	"A polypeptide region that targets a polypeptide to the lysosome." [SO:ke]	1904865	biosapiens,SOFA	SOFA	sequence	3	SO	polypeptide	lysosomal_localization_signal
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001530	"A polypeptide region that targets a polypeptide to the lysosome." [SO:ke]	1904866	biosapiens,SOFA	SOFA	sequence	3	SO	biological_region	lysosomal_localization_signal
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001530	"A polypeptide region that targets a polypeptide to the lysosome." [SO:ke]	2929305	SOFA	SOFA	sequence	4	SO	biological_region	lysosomal_localization_signal
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001530	"A polypeptide region that targets a polypeptide to the lysosome." [SO:ke]	4002432	SOFA	SOFA	sequence	5	SO	region	lysosomal_localization_signal
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001530	"A polypeptide region that targets a polypeptide to the lysosome." [SO:ke]	4385850	SOFA	SOFA	sequence	6	SO	sequence_feature	lysosomal_localization_signal
SO:0001531	\N	\N	"A polypeptide region that targets a polypeptide to he cytoplasm." [SO:ke]	SO:0001531	"A polypeptide region that targets a polypeptide to he cytoplasm." [SO:ke]	46404	\N	\N	sequence	0	SO	nuclear_export_signal	nuclear_export_signal
SO:0001527	SO:0001531	\N	"A region of peptide sequence used to target the polypeptide molecule to a specific organelle." [SO:ke]	SO:0001531	"A polypeptide region that targets a polypeptide to he cytoplasm." [SO:ke]	491152	\N	SOFA	sequence	1	SO	peptide_localization_signal	nuclear_export_signal
SO:0000839	SO:0001527	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001531	"A polypeptide region that targets a polypeptide to he cytoplasm." [SO:ke]	1073753	SOFA	biosapiens,SOFA	sequence	2	SO	polypeptide_region	nuclear_export_signal
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001531	"A polypeptide region that targets a polypeptide to he cytoplasm." [SO:ke]	1904867	biosapiens,SOFA	SOFA	sequence	3	SO	polypeptide	nuclear_export_signal
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001531	"A polypeptide region that targets a polypeptide to he cytoplasm." [SO:ke]	1904868	biosapiens,SOFA	SOFA	sequence	3	SO	biological_region	nuclear_export_signal
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001531	"A polypeptide region that targets a polypeptide to he cytoplasm." [SO:ke]	2929307	SOFA	SOFA	sequence	4	SO	biological_region	nuclear_export_signal
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001531	"A polypeptide region that targets a polypeptide to he cytoplasm." [SO:ke]	4002434	SOFA	SOFA	sequence	5	SO	region	nuclear_export_signal
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001531	"A polypeptide region that targets a polypeptide to he cytoplasm." [SO:ke]	4385851	SOFA	SOFA	sequence	6	SO	sequence_feature	nuclear_export_signal
SO:0001532	\N	\N	"A region recognized by a recombinase." [SO:ke]	SO:0001532	"A region recognized by a recombinase." [SO:ke]	46405	\N	\N	sequence	0	SO	recombination_signal_sequence	recombination_signal_sequence
SO:0000299	SO:0001532	\N	"" []	SO:0001532	"A region recognized by a recombinase." [SO:ke]	491153	\N	\N	sequence	1	SO	specific_recombination_site	recombination_signal_sequence
SO:0000669	SO:0000299	\N	"" []	SO:0001532	"A region recognized by a recombinase." [SO:ke]	1073754	\N	\N	sequence	2	SO	sequence_rearrangement_feature	recombination_signal_sequence
SO:0000298	SO:0000669	\N	"" []	SO:0001532	"A region recognized by a recombinase." [SO:ke]	1904869	\N	\N	sequence	3	SO	recombination_feature	recombination_signal_sequence
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001532	"A region recognized by a recombinase." [SO:ke]	2929309	\N	SOFA	sequence	4	SO	biological_region	recombination_signal_sequence
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001532	"A region recognized by a recombinase." [SO:ke]	4002436	SOFA	SOFA	sequence	5	SO	region	recombination_signal_sequence
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001532	"A region recognized by a recombinase." [SO:ke]	4966728	SOFA	SOFA	sequence	6	SO	sequence_feature	recombination_signal_sequence
SO:0001533	\N	\N	"A splice site that is in part of the transcript not normally spliced. They occur via mutation or transcriptional error." [SO:ke]	SO:0001533	"A splice site that is in part of the transcript not normally spliced. They occur via mutation or transcriptional error." [SO:ke]	46406	\N	\N	sequence	0	SO	cryptic_splice_site	cryptic_splice_site
SO:0000162	SO:0001533	\N	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	SO:0001533	"A splice site that is in part of the transcript not normally spliced. They occur via mutation or transcriptional error." [SO:ke]	491154	\N	SOFA	sequence	1	SO	splice_site	cryptic_splice_site
SO:0000835	SO:0000162	\N	"A part of a primary transcript." [SO:ke]	SO:0001533	"A splice site that is in part of the transcript not normally spliced. They occur via mutation or transcriptional error." [SO:ke]	1073755	SOFA	SOFA	sequence	2	SO	primary_transcript_region	cryptic_splice_site
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001533	"A splice site that is in part of the transcript not normally spliced. They occur via mutation or transcriptional error." [SO:ke]	1904870	SOFA	SOFA	sequence	3	SO	primary_transcript	cryptic_splice_site
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0001533	"A splice site that is in part of the transcript not normally spliced. They occur via mutation or transcriptional error." [SO:ke]	1904871	SOFA	SOFA	sequence	3	SO	transcript_region	cryptic_splice_site
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001533	"A splice site that is in part of the transcript not normally spliced. They occur via mutation or transcriptional error." [SO:ke]	2929310	SOFA	SOFA	sequence	4	SO	transcript	cryptic_splice_site
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001533	"A splice site that is in part of the transcript not normally spliced. They occur via mutation or transcriptional error." [SO:ke]	2929311	SOFA	SOFA	sequence	4	SO	transcript	cryptic_splice_site
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001533	"A splice site that is in part of the transcript not normally spliced. They occur via mutation or transcriptional error." [SO:ke]	2929312	SOFA	SOFA	sequence	4	SO	biological_region	cryptic_splice_site
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001533	"A splice site that is in part of the transcript not normally spliced. They occur via mutation or transcriptional error." [SO:ke]	4002437	SOFA	SOFA	sequence	5	SO	gene_member_region	cryptic_splice_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001533	"A splice site that is in part of the transcript not normally spliced. They occur via mutation or transcriptional error." [SO:ke]	5741343	SOFA	SOFA	sequence	7	SO	region	cryptic_splice_site
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001533	"A splice site that is in part of the transcript not normally spliced. They occur via mutation or transcriptional error." [SO:ke]	4966729	SOFA	SOFA	sequence	6	SO	biological_region	cryptic_splice_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001533	"A splice site that is in part of the transcript not normally spliced. They occur via mutation or transcriptional error." [SO:ke]	5996447	SOFA	SOFA	sequence	8	SO	sequence_feature	cryptic_splice_site
SO:0001534	\N	\N	"A polypeptide region that targets a polypeptide to the nuclear rim." [SO:ke]	SO:0001534	"A polypeptide region that targets a polypeptide to the nuclear rim." [SO:ke]	46407	\N	\N	sequence	0	SO	nuclear_rim_localization_signal	nuclear_rim_localization_signal
SO:0001527	SO:0001534	\N	"A region of peptide sequence used to target the polypeptide molecule to a specific organelle." [SO:ke]	SO:0001534	"A polypeptide region that targets a polypeptide to the nuclear rim." [SO:ke]	491155	\N	SOFA	sequence	1	SO	peptide_localization_signal	nuclear_rim_localization_signal
SO:0000839	SO:0001527	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001534	"A polypeptide region that targets a polypeptide to the nuclear rim." [SO:ke]	1073756	SOFA	biosapiens,SOFA	sequence	2	SO	polypeptide_region	nuclear_rim_localization_signal
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001534	"A polypeptide region that targets a polypeptide to the nuclear rim." [SO:ke]	1904872	biosapiens,SOFA	SOFA	sequence	3	SO	polypeptide	nuclear_rim_localization_signal
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001534	"A polypeptide region that targets a polypeptide to the nuclear rim." [SO:ke]	1904873	biosapiens,SOFA	SOFA	sequence	3	SO	biological_region	nuclear_rim_localization_signal
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001534	"A polypeptide region that targets a polypeptide to the nuclear rim." [SO:ke]	2929313	SOFA	SOFA	sequence	4	SO	biological_region	nuclear_rim_localization_signal
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001534	"A polypeptide region that targets a polypeptide to the nuclear rim." [SO:ke]	4002439	SOFA	SOFA	sequence	5	SO	region	nuclear_rim_localization_signal
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001534	"A polypeptide region that targets a polypeptide to the nuclear rim." [SO:ke]	4385852	SOFA	SOFA	sequence	6	SO	sequence_feature	nuclear_rim_localization_signal
SO:0001535	\N	\N	"A P_element is a DNA transposon responsible for hybrid dysgenesis." [SO:ke]	SO:0001535	"A P_element is a DNA transposon responsible for hybrid dysgenesis." [SO:ke]	46408	\N	\N	sequence	0	SO	p_element	p_element
SO:0000182	SO:0001535	\N	"A transposon where the mechanism of transposition is via a DNA intermediate." [SO:ke]	SO:0001535	"A P_element is a DNA transposon responsible for hybrid dysgenesis." [SO:ke]	491156	\N	\N	sequence	1	SO	DNA_transposon	p_element
SO:0000101	SO:0000182	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0001535	"A P_element is a DNA transposon responsible for hybrid dysgenesis." [SO:ke]	1073757	\N	SOFA	sequence	2	SO	transposable_element	p_element
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0001535	"A P_element is a DNA transposon responsible for hybrid dysgenesis." [SO:ke]	1904874	SOFA	SOFA	sequence	3	SO	integrated_mobile_genetic_element	p_element
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0001535	"A P_element is a DNA transposon responsible for hybrid dysgenesis." [SO:ke]	2929315	SOFA	SOFA	sequence	4	SO	mobile_genetic_element	p_element
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001535	"A P_element is a DNA transposon responsible for hybrid dysgenesis." [SO:ke]	4002441	SOFA	SOFA	sequence	5	SO	biological_region	p_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001535	"A P_element is a DNA transposon responsible for hybrid dysgenesis." [SO:ke]	4966731	SOFA	SOFA	sequence	6	SO	region	p_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001535	"A P_element is a DNA transposon responsible for hybrid dysgenesis." [SO:ke]	5741344	SOFA	SOFA	sequence	7	SO	sequence_feature	p_element
SO:0001536	\N	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001536	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	46409	\N	\N	sequence	0	SO	functional_variant	functional_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001536	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	491157	\N	\N	sequence	1	SO	sequence_variant	functional_variant
SO:0001537	\N	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001537	"A sequence variant that changes one or more sequence features." [SO:ke]	46410	\N	\N	sequence	0	SO	structural_variant	structural_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001537	"A sequence variant that changes one or more sequence features." [SO:ke]	491158	\N	\N	sequence	1	SO	sequence_variant	structural_variant
SO:0001538	\N	\N	"A sequence variant which alters the functioning of a transcript with respect to a reference sequence." [SO:ke]	SO:0001538	"A sequence variant which alters the functioning of a transcript with respect to a reference sequence." [SO:ke]	46411	\N	\N	sequence	0	SO	transcript_function_variant	transcript_function_variant
SO:0001536	SO:0001538	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001538	"A sequence variant which alters the functioning of a transcript with respect to a reference sequence." [SO:ke]	491159	\N	\N	sequence	1	SO	functional_variant	transcript_function_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001538	"A sequence variant which alters the functioning of a transcript with respect to a reference sequence." [SO:ke]	1073758	\N	\N	sequence	2	SO	sequence_variant	transcript_function_variant
SO:0001539	\N	\N	"A sequence variant that affects the functioning of a translational product with respect to a reference sequence." [SO:ke]	SO:0001539	"A sequence variant that affects the functioning of a translational product with respect to a reference sequence." [SO:ke]	46412	\N	\N	sequence	0	SO	translational_product_function_variant	translational_product_function_variant
SO:0001536	SO:0001539	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001539	"A sequence variant that affects the functioning of a translational product with respect to a reference sequence." [SO:ke]	491160	\N	\N	sequence	1	SO	functional_variant	translational_product_function_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001539	"A sequence variant that affects the functioning of a translational product with respect to a reference sequence." [SO:ke]	1073759	\N	\N	sequence	2	SO	sequence_variant	translational_product_function_variant
SO:0001540	\N	\N	"A sequence variant which alters the level of a transcript." [SO:ke]	SO:0001540	"A sequence variant which alters the level of a transcript." [SO:ke]	46413	\N	\N	sequence	0	SO	level_of_transcript_variant	level_of_transcript_variant
SO:0001538	SO:0001540	\N	"A sequence variant which alters the functioning of a transcript with respect to a reference sequence." [SO:ke]	SO:0001540	"A sequence variant which alters the level of a transcript." [SO:ke]	491161	\N	\N	sequence	1	SO	transcript_function_variant	level_of_transcript_variant
SO:0001536	SO:0001538	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001540	"A sequence variant which alters the level of a transcript." [SO:ke]	1073760	\N	\N	sequence	2	SO	functional_variant	level_of_transcript_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001540	"A sequence variant which alters the level of a transcript." [SO:ke]	1904875	\N	\N	sequence	3	SO	sequence_variant	level_of_transcript_variant
SO:0001541	\N	\N	"A sequence variant that decreases the level of mature, spliced and processed RNA with respect to a reference sequence." [SO:ke]	SO:0001541	"A sequence variant that decreases the level of mature, spliced and processed RNA with respect to a reference sequence." [SO:ke]	46414	\N	\N	sequence	0	SO	decreased_transcript_level_variant	decreased_transcript_level_variant
SO:0001540	SO:0001541	\N	"A sequence variant which alters the level of a transcript." [SO:ke]	SO:0001541	"A sequence variant that decreases the level of mature, spliced and processed RNA with respect to a reference sequence." [SO:ke]	491162	\N	\N	sequence	1	SO	level_of_transcript_variant	decreased_transcript_level_variant
SO:0001538	SO:0001540	\N	"A sequence variant which alters the functioning of a transcript with respect to a reference sequence." [SO:ke]	SO:0001541	"A sequence variant that decreases the level of mature, spliced and processed RNA with respect to a reference sequence." [SO:ke]	1073761	\N	\N	sequence	2	SO	transcript_function_variant	decreased_transcript_level_variant
SO:0001536	SO:0001538	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001541	"A sequence variant that decreases the level of mature, spliced and processed RNA with respect to a reference sequence." [SO:ke]	1904876	\N	\N	sequence	3	SO	functional_variant	decreased_transcript_level_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001541	"A sequence variant that decreases the level of mature, spliced and processed RNA with respect to a reference sequence." [SO:ke]	2929316	\N	\N	sequence	4	SO	sequence_variant	decreased_transcript_level_variant
SO:0001542	\N	\N	"A sequence variant that increases the level of mature, spliced and processed RNA with respect to a reference sequence." [SO:ke]	SO:0001542	"A sequence variant that increases the level of mature, spliced and processed RNA with respect to a reference sequence." [SO:ke]	46415	\N	\N	sequence	0	SO	increased_transcript_level_variant	increased_transcript_level_variant
SO:0001540	SO:0001542	\N	"A sequence variant which alters the level of a transcript." [SO:ke]	SO:0001542	"A sequence variant that increases the level of mature, spliced and processed RNA with respect to a reference sequence." [SO:ke]	491163	\N	\N	sequence	1	SO	level_of_transcript_variant	increased_transcript_level_variant
SO:0001538	SO:0001540	\N	"A sequence variant which alters the functioning of a transcript with respect to a reference sequence." [SO:ke]	SO:0001542	"A sequence variant that increases the level of mature, spliced and processed RNA with respect to a reference sequence." [SO:ke]	1073762	\N	\N	sequence	2	SO	transcript_function_variant	increased_transcript_level_variant
SO:0001536	SO:0001538	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001542	"A sequence variant that increases the level of mature, spliced and processed RNA with respect to a reference sequence." [SO:ke]	1904877	\N	\N	sequence	3	SO	functional_variant	increased_transcript_level_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001542	"A sequence variant that increases the level of mature, spliced and processed RNA with respect to a reference sequence." [SO:ke]	2929317	\N	\N	sequence	4	SO	sequence_variant	increased_transcript_level_variant
SO:0001543	\N	\N	"A sequence variant that affects the post transcriptional processing of a transcript with respect to a reference sequence." [SO:ke]	SO:0001543	"A sequence variant that affects the post transcriptional processing of a transcript with respect to a reference sequence." [SO:ke]	46416	\N	\N	sequence	0	SO	transcript_processing_variant	transcript_processing_variant
SO:0001538	SO:0001543	\N	"A sequence variant which alters the functioning of a transcript with respect to a reference sequence." [SO:ke]	SO:0001543	"A sequence variant that affects the post transcriptional processing of a transcript with respect to a reference sequence." [SO:ke]	491164	\N	\N	sequence	1	SO	transcript_function_variant	transcript_processing_variant
SO:0001536	SO:0001538	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001543	"A sequence variant that affects the post transcriptional processing of a transcript with respect to a reference sequence." [SO:ke]	1073763	\N	\N	sequence	2	SO	functional_variant	transcript_processing_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001543	"A sequence variant that affects the post transcriptional processing of a transcript with respect to a reference sequence." [SO:ke]	1904878	\N	\N	sequence	3	SO	sequence_variant	transcript_processing_variant
SO:0001544	\N	\N	"A transcript processing variant whereby the process of editing is disrupted with respect to the reference." [SO:ke]	SO:0001544	"A transcript processing variant whereby the process of editing is disrupted with respect to the reference." [SO:ke]	46417	\N	\N	sequence	0	SO	editing_variant	editing_variant
SO:0001543	SO:0001544	\N	"A sequence variant that affects the post transcriptional processing of a transcript with respect to a reference sequence." [SO:ke]	SO:0001544	"A transcript processing variant whereby the process of editing is disrupted with respect to the reference." [SO:ke]	491165	\N	\N	sequence	1	SO	transcript_processing_variant	editing_variant
SO:0001538	SO:0001543	\N	"A sequence variant which alters the functioning of a transcript with respect to a reference sequence." [SO:ke]	SO:0001544	"A transcript processing variant whereby the process of editing is disrupted with respect to the reference." [SO:ke]	1073764	\N	\N	sequence	2	SO	transcript_function_variant	editing_variant
SO:0001536	SO:0001538	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001544	"A transcript processing variant whereby the process of editing is disrupted with respect to the reference." [SO:ke]	1904879	\N	\N	sequence	3	SO	functional_variant	editing_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001544	"A transcript processing variant whereby the process of editing is disrupted with respect to the reference." [SO:ke]	2929318	\N	\N	sequence	4	SO	sequence_variant	editing_variant
SO:0001545	\N	\N	"A sequence variant that changes polyadenylation with respect to a reference sequence." [SO:ke]	SO:0001545	"A sequence variant that changes polyadenylation with respect to a reference sequence." [SO:ke]	46418	\N	\N	sequence	0	SO	polyadenylation_variant	polyadenylation_variant
SO:0001543	SO:0001545	\N	"A sequence variant that affects the post transcriptional processing of a transcript with respect to a reference sequence." [SO:ke]	SO:0001545	"A sequence variant that changes polyadenylation with respect to a reference sequence." [SO:ke]	491166	\N	\N	sequence	1	SO	transcript_processing_variant	polyadenylation_variant
SO:0001538	SO:0001543	\N	"A sequence variant which alters the functioning of a transcript with respect to a reference sequence." [SO:ke]	SO:0001545	"A sequence variant that changes polyadenylation with respect to a reference sequence." [SO:ke]	1073765	\N	\N	sequence	2	SO	transcript_function_variant	polyadenylation_variant
SO:0001536	SO:0001538	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001545	"A sequence variant that changes polyadenylation with respect to a reference sequence." [SO:ke]	1904880	\N	\N	sequence	3	SO	functional_variant	polyadenylation_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001545	"A sequence variant that changes polyadenylation with respect to a reference sequence." [SO:ke]	2929319	\N	\N	sequence	4	SO	sequence_variant	polyadenylation_variant
SO:0001546	\N	\N	"A variant that changes the stability of a transcript with respect to a reference sequence." [SO:ke]	SO:0001546	"A variant that changes the stability of a transcript with respect to a reference sequence." [SO:ke]	46419	\N	\N	sequence	0	SO	transcript_stability_variant	transcript_stability_variant
SO:0001538	SO:0001546	\N	"A sequence variant which alters the functioning of a transcript with respect to a reference sequence." [SO:ke]	SO:0001546	"A variant that changes the stability of a transcript with respect to a reference sequence." [SO:ke]	491167	\N	\N	sequence	1	SO	transcript_function_variant	transcript_stability_variant
SO:0001536	SO:0001538	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001546	"A variant that changes the stability of a transcript with respect to a reference sequence." [SO:ke]	1073766	\N	\N	sequence	2	SO	functional_variant	transcript_stability_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001546	"A variant that changes the stability of a transcript with respect to a reference sequence." [SO:ke]	1904881	\N	\N	sequence	3	SO	sequence_variant	transcript_stability_variant
SO:0001547	\N	\N	"A sequence variant that decreases transcript stability with respect to a reference sequence." [SO:ke]	SO:0001547	"A sequence variant that decreases transcript stability with respect to a reference sequence." [SO:ke]	46420	\N	\N	sequence	0	SO	decreased_transcript_stability_variant	decreased_transcript_stability_variant
SO:0001546	SO:0001547	\N	"A variant that changes the stability of a transcript with respect to a reference sequence." [SO:ke]	SO:0001547	"A sequence variant that decreases transcript stability with respect to a reference sequence." [SO:ke]	491168	\N	\N	sequence	1	SO	transcript_stability_variant	decreased_transcript_stability_variant
SO:0001538	SO:0001546	\N	"A sequence variant which alters the functioning of a transcript with respect to a reference sequence." [SO:ke]	SO:0001547	"A sequence variant that decreases transcript stability with respect to a reference sequence." [SO:ke]	1073767	\N	\N	sequence	2	SO	transcript_function_variant	decreased_transcript_stability_variant
SO:0001536	SO:0001538	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001547	"A sequence variant that decreases transcript stability with respect to a reference sequence." [SO:ke]	1904882	\N	\N	sequence	3	SO	functional_variant	decreased_transcript_stability_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001547	"A sequence variant that decreases transcript stability with respect to a reference sequence." [SO:ke]	2929320	\N	\N	sequence	4	SO	sequence_variant	decreased_transcript_stability_variant
SO:0001548	\N	\N	"A sequence variant that increases transcript stability with respect to a reference sequence." [SO:ke]	SO:0001548	"A sequence variant that increases transcript stability with respect to a reference sequence." [SO:ke]	46421	\N	\N	sequence	0	SO	increased_transcript_stability_variant	increased_transcript_stability_variant
SO:0001546	SO:0001548	\N	"A variant that changes the stability of a transcript with respect to a reference sequence." [SO:ke]	SO:0001548	"A sequence variant that increases transcript stability with respect to a reference sequence." [SO:ke]	491169	\N	\N	sequence	1	SO	transcript_stability_variant	increased_transcript_stability_variant
SO:0001538	SO:0001546	\N	"A sequence variant which alters the functioning of a transcript with respect to a reference sequence." [SO:ke]	SO:0001548	"A sequence variant that increases transcript stability with respect to a reference sequence." [SO:ke]	1073768	\N	\N	sequence	2	SO	transcript_function_variant	increased_transcript_stability_variant
SO:0001536	SO:0001538	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001548	"A sequence variant that increases transcript stability with respect to a reference sequence." [SO:ke]	1904883	\N	\N	sequence	3	SO	functional_variant	increased_transcript_stability_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001548	"A sequence variant that increases transcript stability with respect to a reference sequence." [SO:ke]	2929321	\N	\N	sequence	4	SO	sequence_variant	increased_transcript_stability_variant
SO:0001549	\N	\N	"A variant that changes alters the transcription of a transcript with respect to a reference sequence." [SO:ke]	SO:0001549	"A variant that changes alters the transcription of a transcript with respect to a reference sequence." [SO:ke]	46422	\N	\N	sequence	0	SO	transcription_variant	transcription_variant
SO:0001538	SO:0001549	\N	"A sequence variant which alters the functioning of a transcript with respect to a reference sequence." [SO:ke]	SO:0001549	"A variant that changes alters the transcription of a transcript with respect to a reference sequence." [SO:ke]	491170	\N	\N	sequence	1	SO	transcript_function_variant	transcription_variant
SO:0001536	SO:0001538	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001549	"A variant that changes alters the transcription of a transcript with respect to a reference sequence." [SO:ke]	1073769	\N	\N	sequence	2	SO	functional_variant	transcription_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001549	"A variant that changes alters the transcription of a transcript with respect to a reference sequence." [SO:ke]	1904884	\N	\N	sequence	3	SO	sequence_variant	transcription_variant
SO:0001550	\N	\N	"A sequence variant that changes the rate of transcription with respect to a reference sequence." [SO:ke]	SO:0001550	"A sequence variant that changes the rate of transcription with respect to a reference sequence." [SO:ke]	46423	\N	\N	sequence	0	SO	rate_of_transcription_variant	rate_of_transcription_variant
SO:0001549	SO:0001550	\N	"A variant that changes alters the transcription of a transcript with respect to a reference sequence." [SO:ke]	SO:0001550	"A sequence variant that changes the rate of transcription with respect to a reference sequence." [SO:ke]	491171	\N	\N	sequence	1	SO	transcription_variant	rate_of_transcription_variant
SO:0001538	SO:0001549	\N	"A sequence variant which alters the functioning of a transcript with respect to a reference sequence." [SO:ke]	SO:0001550	"A sequence variant that changes the rate of transcription with respect to a reference sequence." [SO:ke]	1073770	\N	\N	sequence	2	SO	transcript_function_variant	rate_of_transcription_variant
SO:0001536	SO:0001538	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001550	"A sequence variant that changes the rate of transcription with respect to a reference sequence." [SO:ke]	1904885	\N	\N	sequence	3	SO	functional_variant	rate_of_transcription_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001550	"A sequence variant that changes the rate of transcription with respect to a reference sequence." [SO:ke]	2929322	\N	\N	sequence	4	SO	sequence_variant	rate_of_transcription_variant
SO:0001551	\N	\N	"A sequence variant that increases the rate of transcription with respect to a reference sequence." [SO:ke]	SO:0001551	"A sequence variant that increases the rate of transcription with respect to a reference sequence." [SO:ke]	46424	\N	\N	sequence	0	SO	increased_transcription_rate_variant	increased_transcription_rate_variant
SO:0001550	SO:0001551	\N	"A sequence variant that changes the rate of transcription with respect to a reference sequence." [SO:ke]	SO:0001551	"A sequence variant that increases the rate of transcription with respect to a reference sequence." [SO:ke]	491172	\N	\N	sequence	1	SO	rate_of_transcription_variant	increased_transcription_rate_variant
SO:0001549	SO:0001550	\N	"A variant that changes alters the transcription of a transcript with respect to a reference sequence." [SO:ke]	SO:0001551	"A sequence variant that increases the rate of transcription with respect to a reference sequence." [SO:ke]	1073771	\N	\N	sequence	2	SO	transcription_variant	increased_transcription_rate_variant
SO:0001538	SO:0001549	\N	"A sequence variant which alters the functioning of a transcript with respect to a reference sequence." [SO:ke]	SO:0001551	"A sequence variant that increases the rate of transcription with respect to a reference sequence." [SO:ke]	1904886	\N	\N	sequence	3	SO	transcript_function_variant	increased_transcription_rate_variant
SO:0001536	SO:0001538	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001551	"A sequence variant that increases the rate of transcription with respect to a reference sequence." [SO:ke]	2929323	\N	\N	sequence	4	SO	functional_variant	increased_transcription_rate_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001551	"A sequence variant that increases the rate of transcription with respect to a reference sequence." [SO:ke]	4002442	\N	\N	sequence	5	SO	sequence_variant	increased_transcription_rate_variant
SO:0001552	\N	\N	"A sequence variant that decreases the rate of transcription with respect to a reference sequence." [SO:ke]	SO:0001552	"A sequence variant that decreases the rate of transcription with respect to a reference sequence." [SO:ke]	46425	\N	\N	sequence	0	SO	decreased_transcription_rate_variant	decreased_transcription_rate_variant
SO:0001550	SO:0001552	\N	"A sequence variant that changes the rate of transcription with respect to a reference sequence." [SO:ke]	SO:0001552	"A sequence variant that decreases the rate of transcription with respect to a reference sequence." [SO:ke]	491173	\N	\N	sequence	1	SO	rate_of_transcription_variant	decreased_transcription_rate_variant
SO:0001549	SO:0001550	\N	"A variant that changes alters the transcription of a transcript with respect to a reference sequence." [SO:ke]	SO:0001552	"A sequence variant that decreases the rate of transcription with respect to a reference sequence." [SO:ke]	1073772	\N	\N	sequence	2	SO	transcription_variant	decreased_transcription_rate_variant
SO:0001538	SO:0001549	\N	"A sequence variant which alters the functioning of a transcript with respect to a reference sequence." [SO:ke]	SO:0001552	"A sequence variant that decreases the rate of transcription with respect to a reference sequence." [SO:ke]	1904887	\N	\N	sequence	3	SO	transcript_function_variant	decreased_transcription_rate_variant
SO:0001536	SO:0001538	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001552	"A sequence variant that decreases the rate of transcription with respect to a reference sequence." [SO:ke]	2929324	\N	\N	sequence	4	SO	functional_variant	decreased_transcription_rate_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001552	"A sequence variant that decreases the rate of transcription with respect to a reference sequence." [SO:ke]	4002443	\N	\N	sequence	5	SO	sequence_variant	decreased_transcription_rate_variant
SO:0001553	\N	\N	"A functional variant that changes the translational product level with respect to a reference sequence." [SO:ke]	SO:0001553	"A functional variant that changes the translational product level with respect to a reference sequence." [SO:ke]	46426	\N	\N	sequence	0	SO	translational_product_level_variant	translational_product_level_variant
SO:0001539	SO:0001553	\N	"A sequence variant that affects the functioning of a translational product with respect to a reference sequence." [SO:ke]	SO:0001553	"A functional variant that changes the translational product level with respect to a reference sequence." [SO:ke]	491174	\N	\N	sequence	1	SO	translational_product_function_variant	translational_product_level_variant
SO:0001536	SO:0001539	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001553	"A functional variant that changes the translational product level with respect to a reference sequence." [SO:ke]	1073773	\N	\N	sequence	2	SO	functional_variant	translational_product_level_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001553	"A functional variant that changes the translational product level with respect to a reference sequence." [SO:ke]	1904888	\N	\N	sequence	3	SO	sequence_variant	translational_product_level_variant
SO:0001554	\N	\N	"A sequence variant which changes polypeptide functioning with respect to a reference sequence." [SO:ke]	SO:0001554	"A sequence variant which changes polypeptide functioning with respect to a reference sequence." [SO:ke]	46427	\N	\N	sequence	0	SO	polypeptide_function_variant	polypeptide_function_variant
SO:0001539	SO:0001554	\N	"A sequence variant that affects the functioning of a translational product with respect to a reference sequence." [SO:ke]	SO:0001554	"A sequence variant which changes polypeptide functioning with respect to a reference sequence." [SO:ke]	491175	\N	\N	sequence	1	SO	translational_product_function_variant	polypeptide_function_variant
SO:0001536	SO:0001539	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001554	"A sequence variant which changes polypeptide functioning with respect to a reference sequence." [SO:ke]	1073774	\N	\N	sequence	2	SO	functional_variant	polypeptide_function_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001554	"A sequence variant which changes polypeptide functioning with respect to a reference sequence." [SO:ke]	1904889	\N	\N	sequence	3	SO	sequence_variant	polypeptide_function_variant
SO:0001555	\N	\N	"A sequence variant which decreases the translational product level with respect to a reference sequence." [SO:ke]	SO:0001555	"A sequence variant which decreases the translational product level with respect to a reference sequence." [SO:ke]	46428	\N	\N	sequence	0	SO	decreased_translational_product_level	decreased_translational_product_level
SO:0001553	SO:0001555	\N	"A functional variant that changes the translational product level with respect to a reference sequence." [SO:ke]	SO:0001555	"A sequence variant which decreases the translational product level with respect to a reference sequence." [SO:ke]	491176	\N	\N	sequence	1	SO	translational_product_level_variant	decreased_translational_product_level
SO:0001539	SO:0001553	\N	"A sequence variant that affects the functioning of a translational product with respect to a reference sequence." [SO:ke]	SO:0001555	"A sequence variant which decreases the translational product level with respect to a reference sequence." [SO:ke]	1073775	\N	\N	sequence	2	SO	translational_product_function_variant	decreased_translational_product_level
SO:0001536	SO:0001539	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001555	"A sequence variant which decreases the translational product level with respect to a reference sequence." [SO:ke]	1904890	\N	\N	sequence	3	SO	functional_variant	decreased_translational_product_level
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001555	"A sequence variant which decreases the translational product level with respect to a reference sequence." [SO:ke]	2929325	\N	\N	sequence	4	SO	sequence_variant	decreased_translational_product_level
SO:0001556	\N	\N	"A sequence variant which increases the translational product level with respect to a reference sequence." [SO:ke]	SO:0001556	"A sequence variant which increases the translational product level with respect to a reference sequence." [SO:ke]	46429	\N	\N	sequence	0	SO	increased_translational_product_level	increased_translational_product_level
SO:0001553	SO:0001556	\N	"A functional variant that changes the translational product level with respect to a reference sequence." [SO:ke]	SO:0001556	"A sequence variant which increases the translational product level with respect to a reference sequence." [SO:ke]	491177	\N	\N	sequence	1	SO	translational_product_level_variant	increased_translational_product_level
SO:0001539	SO:0001553	\N	"A sequence variant that affects the functioning of a translational product with respect to a reference sequence." [SO:ke]	SO:0001556	"A sequence variant which increases the translational product level with respect to a reference sequence." [SO:ke]	1073776	\N	\N	sequence	2	SO	translational_product_function_variant	increased_translational_product_level
SO:0001536	SO:0001539	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001556	"A sequence variant which increases the translational product level with respect to a reference sequence." [SO:ke]	1904891	\N	\N	sequence	3	SO	functional_variant	increased_translational_product_level
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001556	"A sequence variant which increases the translational product level with respect to a reference sequence." [SO:ke]	2929326	\N	\N	sequence	4	SO	sequence_variant	increased_translational_product_level
SO:0001557	\N	\N	"A sequence variant which causes gain of polypeptide function with respect to a reference sequence." [SO:ke]	SO:0001557	"A sequence variant which causes gain of polypeptide function with respect to a reference sequence." [SO:ke]	46430	\N	\N	sequence	0	SO	polypeptide_gain_of_function_variant	polypeptide_gain_of_function_variant
SO:0001554	SO:0001557	\N	"A sequence variant which changes polypeptide functioning with respect to a reference sequence." [SO:ke]	SO:0001557	"A sequence variant which causes gain of polypeptide function with respect to a reference sequence." [SO:ke]	491178	\N	\N	sequence	1	SO	polypeptide_function_variant	polypeptide_gain_of_function_variant
SO:0001539	SO:0001554	\N	"A sequence variant that affects the functioning of a translational product with respect to a reference sequence." [SO:ke]	SO:0001557	"A sequence variant which causes gain of polypeptide function with respect to a reference sequence." [SO:ke]	1073777	\N	\N	sequence	2	SO	translational_product_function_variant	polypeptide_gain_of_function_variant
SO:0001536	SO:0001539	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001557	"A sequence variant which causes gain of polypeptide function with respect to a reference sequence." [SO:ke]	1904892	\N	\N	sequence	3	SO	functional_variant	polypeptide_gain_of_function_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001557	"A sequence variant which causes gain of polypeptide function with respect to a reference sequence." [SO:ke]	2929327	\N	\N	sequence	4	SO	sequence_variant	polypeptide_gain_of_function_variant
SO:0001558	\N	\N	"A sequence variant which changes the localization of a polypeptide with respect to a reference sequence." [SO:ke]	SO:0001558	"A sequence variant which changes the localization of a polypeptide with respect to a reference sequence." [SO:ke]	46431	\N	\N	sequence	0	SO	polypeptide_localization_variant	polypeptide_localization_variant
SO:0001554	SO:0001558	\N	"A sequence variant which changes polypeptide functioning with respect to a reference sequence." [SO:ke]	SO:0001558	"A sequence variant which changes the localization of a polypeptide with respect to a reference sequence." [SO:ke]	491179	\N	\N	sequence	1	SO	polypeptide_function_variant	polypeptide_localization_variant
SO:0001539	SO:0001554	\N	"A sequence variant that affects the functioning of a translational product with respect to a reference sequence." [SO:ke]	SO:0001558	"A sequence variant which changes the localization of a polypeptide with respect to a reference sequence." [SO:ke]	1073778	\N	\N	sequence	2	SO	translational_product_function_variant	polypeptide_localization_variant
SO:0001536	SO:0001539	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001558	"A sequence variant which changes the localization of a polypeptide with respect to a reference sequence." [SO:ke]	1904893	\N	\N	sequence	3	SO	functional_variant	polypeptide_localization_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001558	"A sequence variant which changes the localization of a polypeptide with respect to a reference sequence." [SO:ke]	2929328	\N	\N	sequence	4	SO	sequence_variant	polypeptide_localization_variant
SO:0001559	\N	\N	"A sequence variant that causes the loss of a polypeptide function with respect to a reference sequence." [SO:ke]	SO:0001559	"A sequence variant that causes the loss of a polypeptide function with respect to a reference sequence." [SO:ke]	46432	\N	\N	sequence	0	SO	polypeptide_loss_of_function_variant	polypeptide_loss_of_function_variant
SO:0001554	SO:0001559	\N	"A sequence variant which changes polypeptide functioning with respect to a reference sequence." [SO:ke]	SO:0001559	"A sequence variant that causes the loss of a polypeptide function with respect to a reference sequence." [SO:ke]	491180	\N	\N	sequence	1	SO	polypeptide_function_variant	polypeptide_loss_of_function_variant
SO:0001539	SO:0001554	\N	"A sequence variant that affects the functioning of a translational product with respect to a reference sequence." [SO:ke]	SO:0001559	"A sequence variant that causes the loss of a polypeptide function with respect to a reference sequence." [SO:ke]	1073779	\N	\N	sequence	2	SO	translational_product_function_variant	polypeptide_loss_of_function_variant
SO:0001536	SO:0001539	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001559	"A sequence variant that causes the loss of a polypeptide function with respect to a reference sequence." [SO:ke]	1904894	\N	\N	sequence	3	SO	functional_variant	polypeptide_loss_of_function_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001559	"A sequence variant that causes the loss of a polypeptide function with respect to a reference sequence." [SO:ke]	2929329	\N	\N	sequence	4	SO	sequence_variant	polypeptide_loss_of_function_variant
SO:0001560	\N	\N	"A sequence variant that causes the inactivation of a ligand binding site with respect to a reference sequence." [SO:ke]	SO:0001560	"A sequence variant that causes the inactivation of a ligand binding site with respect to a reference sequence." [SO:ke]	46433	\N	\N	sequence	0	SO	inactive_ligand_binding_site	inactive_ligand_binding_site
SO:0001559	SO:0001560	\N	"A sequence variant that causes the loss of a polypeptide function with respect to a reference sequence." [SO:ke]	SO:0001560	"A sequence variant that causes the inactivation of a ligand binding site with respect to a reference sequence." [SO:ke]	491181	\N	\N	sequence	1	SO	polypeptide_loss_of_function_variant	inactive_ligand_binding_site
SO:0001554	SO:0001559	\N	"A sequence variant which changes polypeptide functioning with respect to a reference sequence." [SO:ke]	SO:0001560	"A sequence variant that causes the inactivation of a ligand binding site with respect to a reference sequence." [SO:ke]	1073780	\N	\N	sequence	2	SO	polypeptide_function_variant	inactive_ligand_binding_site
SO:0001539	SO:0001554	\N	"A sequence variant that affects the functioning of a translational product with respect to a reference sequence." [SO:ke]	SO:0001560	"A sequence variant that causes the inactivation of a ligand binding site with respect to a reference sequence." [SO:ke]	1904895	\N	\N	sequence	3	SO	translational_product_function_variant	inactive_ligand_binding_site
SO:0001536	SO:0001539	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001560	"A sequence variant that causes the inactivation of a ligand binding site with respect to a reference sequence." [SO:ke]	2929330	\N	\N	sequence	4	SO	functional_variant	inactive_ligand_binding_site
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001560	"A sequence variant that causes the inactivation of a ligand binding site with respect to a reference sequence." [SO:ke]	4002444	\N	\N	sequence	5	SO	sequence_variant	inactive_ligand_binding_site
SO:0001561	\N	\N	"A sequence variant that causes some but not all loss of polypeptide function with respect to a reference sequence." [SO:ke]	SO:0001561	"A sequence variant that causes some but not all loss of polypeptide function with respect to a reference sequence." [SO:ke]	46434	\N	\N	sequence	0	SO	polypeptide_partial_loss_of_function	polypeptide_partial_loss_of_function
SO:0001559	SO:0001561	\N	"A sequence variant that causes the loss of a polypeptide function with respect to a reference sequence." [SO:ke]	SO:0001561	"A sequence variant that causes some but not all loss of polypeptide function with respect to a reference sequence." [SO:ke]	491182	\N	\N	sequence	1	SO	polypeptide_loss_of_function_variant	polypeptide_partial_loss_of_function
SO:0001554	SO:0001559	\N	"A sequence variant which changes polypeptide functioning with respect to a reference sequence." [SO:ke]	SO:0001561	"A sequence variant that causes some but not all loss of polypeptide function with respect to a reference sequence." [SO:ke]	1073781	\N	\N	sequence	2	SO	polypeptide_function_variant	polypeptide_partial_loss_of_function
SO:0001539	SO:0001554	\N	"A sequence variant that affects the functioning of a translational product with respect to a reference sequence." [SO:ke]	SO:0001561	"A sequence variant that causes some but not all loss of polypeptide function with respect to a reference sequence." [SO:ke]	1904896	\N	\N	sequence	3	SO	translational_product_function_variant	polypeptide_partial_loss_of_function
SO:0001536	SO:0001539	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001561	"A sequence variant that causes some but not all loss of polypeptide function with respect to a reference sequence." [SO:ke]	2929331	\N	\N	sequence	4	SO	functional_variant	polypeptide_partial_loss_of_function
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001561	"A sequence variant that causes some but not all loss of polypeptide function with respect to a reference sequence." [SO:ke]	4002445	\N	\N	sequence	5	SO	sequence_variant	polypeptide_partial_loss_of_function
SO:0001562	\N	\N	"A sequence variant that causes a change in post translational processing of the peptide with respect to a reference sequence." [SO:ke]	SO:0001562	"A sequence variant that causes a change in post translational processing of the peptide with respect to a reference sequence." [SO:ke]	46435	\N	\N	sequence	0	SO	polypeptide_post_translational_processing_variant	polypeptide_post_translational_processing_variant
SO:0001554	SO:0001562	\N	"A sequence variant which changes polypeptide functioning with respect to a reference sequence." [SO:ke]	SO:0001562	"A sequence variant that causes a change in post translational processing of the peptide with respect to a reference sequence." [SO:ke]	491183	\N	\N	sequence	1	SO	polypeptide_function_variant	polypeptide_post_translational_processing_variant
SO:0001539	SO:0001554	\N	"A sequence variant that affects the functioning of a translational product with respect to a reference sequence." [SO:ke]	SO:0001562	"A sequence variant that causes a change in post translational processing of the peptide with respect to a reference sequence." [SO:ke]	1073782	\N	\N	sequence	2	SO	translational_product_function_variant	polypeptide_post_translational_processing_variant
SO:0001536	SO:0001539	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001562	"A sequence variant that causes a change in post translational processing of the peptide with respect to a reference sequence." [SO:ke]	1904897	\N	\N	sequence	3	SO	functional_variant	polypeptide_post_translational_processing_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001562	"A sequence variant that causes a change in post translational processing of the peptide with respect to a reference sequence." [SO:ke]	2929332	\N	\N	sequence	4	SO	sequence_variant	polypeptide_post_translational_processing_variant
SO:0001563	\N	\N	"A sequence variant where copies of a feature (CNV) are either increased or decreased." [SO:ke]	SO:0001563	"A sequence variant where copies of a feature (CNV) are either increased or decreased." [SO:ke]	46436	\N	\N	sequence	0	SO	copy_number_change	copy_number_change
SO:0002160	SO:0001563	\N	"A sequence variant that changes the length of one or more sequence features." []	SO:0001563	"A sequence variant where copies of a feature (CNV) are either increased or decreased." [SO:ke]	491184	\N	\N	sequence	1	SO	sequence_length_variant	copy_number_change
SO:0001537	SO:0002160	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001563	"A sequence variant where copies of a feature (CNV) are either increased or decreased." [SO:ke]	1073783	\N	\N	sequence	2	SO	structural_variant	copy_number_change
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001563	"A sequence variant where copies of a feature (CNV) are either increased or decreased." [SO:ke]	1904898	\N	\N	sequence	3	SO	sequence_variant	copy_number_change
SO:0001564	\N	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001564	"A sequence variant where the structure of the gene is changed." [SO:ke]	46437	\N	\N	sequence	0	SO	gene_variant	gene_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001564	"A sequence variant where the structure of the gene is changed." [SO:ke]	491185	\N	\N	sequence	1	SO	feature_variant	gene_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001564	"A sequence variant where the structure of the gene is changed." [SO:ke]	1073784	\N	\N	sequence	2	SO	structural_variant	gene_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001564	"A sequence variant where the structure of the gene is changed." [SO:ke]	1904899	\N	\N	sequence	3	SO	sequence_variant	gene_variant
SO:0001565	\N	\N	"A sequence variant whereby a two genes have become joined." [SO:ke]	SO:0001565	"A sequence variant whereby a two genes have become joined." [SO:ke]	46438	\N	\N	sequence	0	SO	gene_fusion	gene_fusion
SO:0001564	SO:0001565	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001565	"A sequence variant whereby a two genes have become joined." [SO:ke]	491186	\N	\N	sequence	1	SO	gene_variant	gene_fusion
SO:0001882	SO:0001565	\N	"A sequence variant, caused by an alteration of the genomic sequence, where a deletion fuses genomic features." [SO:ke]	SO:0001565	"A sequence variant whereby a two genes have become joined." [SO:ke]	491187	\N	\N	sequence	1	SO	feature_fusion	gene_fusion
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001565	"A sequence variant whereby a two genes have become joined." [SO:ke]	1073785	\N	\N	sequence	2	SO	feature_variant	gene_fusion
SO:0001537	SO:0001882	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001565	"A sequence variant whereby a two genes have become joined." [SO:ke]	1073786	\N	\N	sequence	2	SO	structural_variant	gene_fusion
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001565	"A sequence variant whereby a two genes have become joined." [SO:ke]	1904900	\N	\N	sequence	3	SO	structural_variant	gene_fusion
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001565	"A sequence variant whereby a two genes have become joined." [SO:ke]	2929333	\N	\N	sequence	4	SO	sequence_variant	gene_fusion
SO:0001566	\N	\N	"A sequence variant located within a regulatory region." [SO:ke]	SO:0001566	"A sequence variant located within a regulatory region." [SO:ke]	46439	\N	\N	sequence	0	SO	regulatory_region_variant	regulatory_region_variant
SO:0001878	SO:0001566	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001566	"A sequence variant located within a regulatory region." [SO:ke]	491188	\N	\N	sequence	1	SO	feature_variant	regulatory_region_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001566	"A sequence variant located within a regulatory region." [SO:ke]	1073787	\N	\N	sequence	2	SO	structural_variant	regulatory_region_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001566	"A sequence variant located within a regulatory region." [SO:ke]	1904902	\N	\N	sequence	3	SO	sequence_variant	regulatory_region_variant
SO:0001567	\N	\N	"A sequence variant where at least one base in the terminator codon is changed, but the terminator remains." [SO:ke]	SO:0001567	"A sequence variant where at least one base in the terminator codon is changed, but the terminator remains." [SO:ke]	46440	\N	\N	sequence	0	SO	stop_retained_variant	stop_retained_variant
SO:0001590	SO:0001567	\N	"A sequence variant whereby at least one of the bases in the terminator codon is changed." [SO:ke]	SO:0001567	"A sequence variant where at least one base in the terminator codon is changed, but the terminator remains." [SO:ke]	491189	\N	\N	sequence	1	SO	terminator_codon_variant	stop_retained_variant
SO:0001819	SO:0001567	\N	"A sequence variant where there is no resulting change to the encoded amino acid." [SO:ke]	SO:0001567	"A sequence variant where at least one base in the terminator codon is changed, but the terminator remains." [SO:ke]	491190	\N	\N	sequence	1	SO	synonymous_variant	stop_retained_variant
SO:0001580	SO:0001590	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001567	"A sequence variant where at least one base in the terminator codon is changed, but the terminator remains." [SO:ke]	1073788	\N	\N	sequence	2	SO	coding_sequence_variant	stop_retained_variant
SO:0001580	SO:0001819	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001567	"A sequence variant where at least one base in the terminator codon is changed, but the terminator remains." [SO:ke]	1073789	\N	\N	sequence	2	SO	coding_sequence_variant	stop_retained_variant
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001567	"A sequence variant where at least one base in the terminator codon is changed, but the terminator remains." [SO:ke]	1904903	\N	\N	sequence	3	SO	exon_variant	stop_retained_variant
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001567	"A sequence variant where at least one base in the terminator codon is changed, but the terminator remains." [SO:ke]	1904904	\N	\N	sequence	3	SO	coding_transcript_variant	stop_retained_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001567	"A sequence variant where at least one base in the terminator codon is changed, but the terminator remains." [SO:ke]	2929334	\N	\N	sequence	4	SO	transcript_variant	stop_retained_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001567	"A sequence variant where at least one base in the terminator codon is changed, but the terminator remains." [SO:ke]	2929335	\N	\N	sequence	4	SO	transcript_variant	stop_retained_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001567	"A sequence variant where at least one base in the terminator codon is changed, but the terminator remains." [SO:ke]	4002446	\N	\N	sequence	5	SO	gene_variant	stop_retained_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001567	"A sequence variant where at least one base in the terminator codon is changed, but the terminator remains." [SO:ke]	4966732	\N	\N	sequence	6	SO	feature_variant	stop_retained_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001567	"A sequence variant where at least one base in the terminator codon is changed, but the terminator remains." [SO:ke]	5741345	\N	\N	sequence	7	SO	structural_variant	stop_retained_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001567	"A sequence variant where at least one base in the terminator codon is changed, but the terminator remains." [SO:ke]	6311120	\N	\N	sequence	8	SO	sequence_variant	stop_retained_variant
SO:0001568	\N	\N	"A sequence variant that changes the process of splicing." [SO:ke]	SO:0001568	"A sequence variant that changes the process of splicing." [SO:ke]	46441	\N	\N	sequence	0	SO	splicing_variant	splicing_variant
SO:0001576	SO:0001568	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001568	"A sequence variant that changes the process of splicing." [SO:ke]	491191	\N	\N	sequence	1	SO	transcript_variant	splicing_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001568	"A sequence variant that changes the process of splicing." [SO:ke]	1073790	\N	\N	sequence	2	SO	gene_variant	splicing_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001568	"A sequence variant that changes the process of splicing." [SO:ke]	1904905	\N	\N	sequence	3	SO	feature_variant	splicing_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001568	"A sequence variant that changes the process of splicing." [SO:ke]	2929336	\N	\N	sequence	4	SO	structural_variant	splicing_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001568	"A sequence variant that changes the process of splicing." [SO:ke]	4002447	\N	\N	sequence	5	SO	sequence_variant	splicing_variant
SO:0001569	\N	\N	"A sequence variant causing a new (functional) splice site." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	SO:0001569	"A sequence variant causing a new (functional) splice site." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	46442	\N	\N	sequence	0	SO	cryptic_splice_site_variant	cryptic_splice_site_variant
SO:0001568	SO:0001569	\N	"A sequence variant that changes the process of splicing." [SO:ke]	SO:0001569	"A sequence variant causing a new (functional) splice site." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	491192	\N	\N	sequence	1	SO	splicing_variant	cryptic_splice_site_variant
SO:0001576	SO:0001568	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001569	"A sequence variant causing a new (functional) splice site." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	1073791	\N	\N	sequence	2	SO	transcript_variant	cryptic_splice_site_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001569	"A sequence variant causing a new (functional) splice site." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	1904906	\N	\N	sequence	3	SO	gene_variant	cryptic_splice_site_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001569	"A sequence variant causing a new (functional) splice site." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	2929337	\N	\N	sequence	4	SO	feature_variant	cryptic_splice_site_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001569	"A sequence variant causing a new (functional) splice site." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	4002448	\N	\N	sequence	5	SO	structural_variant	cryptic_splice_site_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001569	"A sequence variant causing a new (functional) splice site." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	4966733	\N	\N	sequence	6	SO	sequence_variant	cryptic_splice_site_variant
SO:0001570	\N	\N	"A sequence variant whereby a new splice site is created due to the activation of a new acceptor." [SO:ke]	SO:0001570	"A sequence variant whereby a new splice site is created due to the activation of a new acceptor." [SO:ke]	46443	\N	\N	sequence	0	SO	cryptic_splice_acceptor	cryptic_splice_acceptor
SO:0001569	SO:0001570	\N	"A sequence variant causing a new (functional) splice site." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	SO:0001570	"A sequence variant whereby a new splice site is created due to the activation of a new acceptor." [SO:ke]	491193	\N	\N	sequence	1	SO	cryptic_splice_site_variant	cryptic_splice_acceptor
SO:0001568	SO:0001569	\N	"A sequence variant that changes the process of splicing." [SO:ke]	SO:0001570	"A sequence variant whereby a new splice site is created due to the activation of a new acceptor." [SO:ke]	1073792	\N	\N	sequence	2	SO	splicing_variant	cryptic_splice_acceptor
SO:0001576	SO:0001568	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001570	"A sequence variant whereby a new splice site is created due to the activation of a new acceptor." [SO:ke]	1904907	\N	\N	sequence	3	SO	transcript_variant	cryptic_splice_acceptor
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001570	"A sequence variant whereby a new splice site is created due to the activation of a new acceptor." [SO:ke]	2929338	\N	\N	sequence	4	SO	gene_variant	cryptic_splice_acceptor
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001570	"A sequence variant whereby a new splice site is created due to the activation of a new acceptor." [SO:ke]	4002449	\N	\N	sequence	5	SO	feature_variant	cryptic_splice_acceptor
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001570	"A sequence variant whereby a new splice site is created due to the activation of a new acceptor." [SO:ke]	4966734	\N	\N	sequence	6	SO	structural_variant	cryptic_splice_acceptor
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001570	"A sequence variant whereby a new splice site is created due to the activation of a new acceptor." [SO:ke]	5741346	\N	\N	sequence	7	SO	sequence_variant	cryptic_splice_acceptor
SO:0001571	\N	\N	"A sequence variant whereby a new splice site is created due to the activation of a new donor." [SO:ke]	SO:0001571	"A sequence variant whereby a new splice site is created due to the activation of a new donor." [SO:ke]	46444	\N	\N	sequence	0	SO	cryptic_splice_donor	cryptic_splice_donor
SO:0001569	SO:0001571	\N	"A sequence variant causing a new (functional) splice site." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	SO:0001571	"A sequence variant whereby a new splice site is created due to the activation of a new donor." [SO:ke]	491194	\N	\N	sequence	1	SO	cryptic_splice_site_variant	cryptic_splice_donor
SO:0001568	SO:0001569	\N	"A sequence variant that changes the process of splicing." [SO:ke]	SO:0001571	"A sequence variant whereby a new splice site is created due to the activation of a new donor." [SO:ke]	1073793	\N	\N	sequence	2	SO	splicing_variant	cryptic_splice_donor
SO:0001576	SO:0001568	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001571	"A sequence variant whereby a new splice site is created due to the activation of a new donor." [SO:ke]	1904908	\N	\N	sequence	3	SO	transcript_variant	cryptic_splice_donor
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001571	"A sequence variant whereby a new splice site is created due to the activation of a new donor." [SO:ke]	2929339	\N	\N	sequence	4	SO	gene_variant	cryptic_splice_donor
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001571	"A sequence variant whereby a new splice site is created due to the activation of a new donor." [SO:ke]	4002450	\N	\N	sequence	5	SO	feature_variant	cryptic_splice_donor
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001571	"A sequence variant whereby a new splice site is created due to the activation of a new donor." [SO:ke]	4966735	\N	\N	sequence	6	SO	structural_variant	cryptic_splice_donor
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001571	"A sequence variant whereby a new splice site is created due to the activation of a new donor." [SO:ke]	5741347	\N	\N	sequence	7	SO	sequence_variant	cryptic_splice_donor
SO:0001572	\N	\N	"A sequence variant whereby an exon is lost from the transcript." [SO:ke]	SO:0001572	"A sequence variant whereby an exon is lost from the transcript." [SO:ke]	46445	\N	\N	sequence	0	SO	exon_loss_variant	exon_loss_variant
SO:0001568	SO:0001572	\N	"A sequence variant that changes the process of splicing." [SO:ke]	SO:0001572	"A sequence variant whereby an exon is lost from the transcript." [SO:ke]	491195	\N	\N	sequence	1	SO	splicing_variant	exon_loss_variant
SO:0001576	SO:0001568	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001572	"A sequence variant whereby an exon is lost from the transcript." [SO:ke]	1073794	\N	\N	sequence	2	SO	transcript_variant	exon_loss_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001572	"A sequence variant whereby an exon is lost from the transcript." [SO:ke]	1904909	\N	\N	sequence	3	SO	gene_variant	exon_loss_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001572	"A sequence variant whereby an exon is lost from the transcript." [SO:ke]	2929340	\N	\N	sequence	4	SO	feature_variant	exon_loss_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001572	"A sequence variant whereby an exon is lost from the transcript." [SO:ke]	4002451	\N	\N	sequence	5	SO	structural_variant	exon_loss_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001572	"A sequence variant whereby an exon is lost from the transcript." [SO:ke]	4966736	\N	\N	sequence	6	SO	sequence_variant	exon_loss_variant
SO:0001573	\N	\N	"A sequence variant whereby an intron is gained by the processed transcript; usually a result of an alteration of the donor or acceptor." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	SO:0001573	"A sequence variant whereby an intron is gained by the processed transcript; usually a result of an alteration of the donor or acceptor." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	46446	\N	\N	sequence	0	SO	intron_gain_variant	intron_gain_variant
SO:0001568	SO:0001573	\N	"A sequence variant that changes the process of splicing." [SO:ke]	SO:0001573	"A sequence variant whereby an intron is gained by the processed transcript; usually a result of an alteration of the donor or acceptor." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	491196	\N	\N	sequence	1	SO	splicing_variant	intron_gain_variant
SO:0001576	SO:0001568	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001573	"A sequence variant whereby an intron is gained by the processed transcript; usually a result of an alteration of the donor or acceptor." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	1073795	\N	\N	sequence	2	SO	transcript_variant	intron_gain_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001573	"A sequence variant whereby an intron is gained by the processed transcript; usually a result of an alteration of the donor or acceptor." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	1904910	\N	\N	sequence	3	SO	gene_variant	intron_gain_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001573	"A sequence variant whereby an intron is gained by the processed transcript; usually a result of an alteration of the donor or acceptor." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	2929341	\N	\N	sequence	4	SO	feature_variant	intron_gain_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001573	"A sequence variant whereby an intron is gained by the processed transcript; usually a result of an alteration of the donor or acceptor." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	4002452	\N	\N	sequence	5	SO	structural_variant	intron_gain_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001573	"A sequence variant whereby an intron is gained by the processed transcript; usually a result of an alteration of the donor or acceptor." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	4966737	\N	\N	sequence	6	SO	sequence_variant	intron_gain_variant
SO:0001574	\N	\N	"A splice variant that changes the 2 base region at the 3' end of an intron." [SO:ke]	SO:0001574	"A splice variant that changes the 2 base region at the 3' end of an intron." [SO:ke]	46447	\N	\N	sequence	0	SO	splice_acceptor_variant	splice_acceptor_variant
SO:0001629	SO:0001574	\N	"A sequence variant that changes the first two or last two bases of an intron, or the 5th base from the start of the intron in the orientation of the transcript." [http://ensembl.org/info/docs/variation/index.html]	SO:0001574	"A splice variant that changes the 2 base region at the 3' end of an intron." [SO:ke]	491197	\N	\N	sequence	1	SO	splice_site_variant	splice_acceptor_variant
SO:0001568	SO:0001629	\N	"A sequence variant that changes the process of splicing." [SO:ke]	SO:0001574	"A splice variant that changes the 2 base region at the 3' end of an intron." [SO:ke]	1073796	\N	\N	sequence	2	SO	splicing_variant	splice_acceptor_variant
SO:0001627	SO:0001629	\N	"A transcript variant occurring within an intron." [SO:ke]	SO:0001574	"A splice variant that changes the 2 base region at the 3' end of an intron." [SO:ke]	1073797	\N	\N	sequence	2	SO	intron_variant	splice_acceptor_variant
SO:0001576	SO:0001568	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001574	"A splice variant that changes the 2 base region at the 3' end of an intron." [SO:ke]	1904911	\N	\N	sequence	3	SO	transcript_variant	splice_acceptor_variant
SO:0001576	SO:0001627	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001574	"A splice variant that changes the 2 base region at the 3' end of an intron." [SO:ke]	1904912	\N	\N	sequence	3	SO	transcript_variant	splice_acceptor_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001574	"A splice variant that changes the 2 base region at the 3' end of an intron." [SO:ke]	2929342	\N	\N	sequence	4	SO	gene_variant	splice_acceptor_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001574	"A splice variant that changes the 2 base region at the 3' end of an intron." [SO:ke]	4002453	\N	\N	sequence	5	SO	feature_variant	splice_acceptor_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001574	"A splice variant that changes the 2 base region at the 3' end of an intron." [SO:ke]	4966738	\N	\N	sequence	6	SO	structural_variant	splice_acceptor_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001574	"A splice variant that changes the 2 base region at the 3' end of an intron." [SO:ke]	5741348	\N	\N	sequence	7	SO	sequence_variant	splice_acceptor_variant
SO:0001575	\N	\N	"A splice variant that changes the 2 base pair region at the 5' end of an intron." [SO:ke]	SO:0001575	"A splice variant that changes the 2 base pair region at the 5' end of an intron." [SO:ke]	46448	\N	\N	sequence	0	SO	splice_donor_variant	splice_donor_variant
SO:0001629	SO:0001575	\N	"A sequence variant that changes the first two or last two bases of an intron, or the 5th base from the start of the intron in the orientation of the transcript." [http://ensembl.org/info/docs/variation/index.html]	SO:0001575	"A splice variant that changes the 2 base pair region at the 5' end of an intron." [SO:ke]	491198	\N	\N	sequence	1	SO	splice_site_variant	splice_donor_variant
SO:0001568	SO:0001629	\N	"A sequence variant that changes the process of splicing." [SO:ke]	SO:0001575	"A splice variant that changes the 2 base pair region at the 5' end of an intron." [SO:ke]	1073798	\N	\N	sequence	2	SO	splicing_variant	splice_donor_variant
SO:0001627	SO:0001629	\N	"A transcript variant occurring within an intron." [SO:ke]	SO:0001575	"A splice variant that changes the 2 base pair region at the 5' end of an intron." [SO:ke]	1073799	\N	\N	sequence	2	SO	intron_variant	splice_donor_variant
SO:0001576	SO:0001568	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001575	"A splice variant that changes the 2 base pair region at the 5' end of an intron." [SO:ke]	1904913	\N	\N	sequence	3	SO	transcript_variant	splice_donor_variant
SO:0001576	SO:0001627	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001575	"A splice variant that changes the 2 base pair region at the 5' end of an intron." [SO:ke]	1904914	\N	\N	sequence	3	SO	transcript_variant	splice_donor_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001575	"A splice variant that changes the 2 base pair region at the 5' end of an intron." [SO:ke]	2929343	\N	\N	sequence	4	SO	gene_variant	splice_donor_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001575	"A splice variant that changes the 2 base pair region at the 5' end of an intron." [SO:ke]	4002454	\N	\N	sequence	5	SO	feature_variant	splice_donor_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001575	"A splice variant that changes the 2 base pair region at the 5' end of an intron." [SO:ke]	4966739	\N	\N	sequence	6	SO	structural_variant	splice_donor_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001575	"A splice variant that changes the 2 base pair region at the 5' end of an intron." [SO:ke]	5741349	\N	\N	sequence	7	SO	sequence_variant	splice_donor_variant
SO:0001576	\N	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001576	"A sequence variant that changes the structure of the transcript." [SO:ke]	46449	\N	\N	sequence	0	SO	transcript_variant	transcript_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001576	"A sequence variant that changes the structure of the transcript." [SO:ke]	491199	\N	\N	sequence	1	SO	gene_variant	transcript_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001576	"A sequence variant that changes the structure of the transcript." [SO:ke]	1073800	\N	\N	sequence	2	SO	feature_variant	transcript_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001576	"A sequence variant that changes the structure of the transcript." [SO:ke]	1904915	\N	\N	sequence	3	SO	structural_variant	transcript_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001576	"A sequence variant that changes the structure of the transcript." [SO:ke]	2929344	\N	\N	sequence	4	SO	sequence_variant	transcript_variant
SO:0001577	\N	\N	"A transcript variant with a complex INDEL- Insertion or deletion that spans an exon/intron border or a coding sequence/UTR border." [http://ensembl.org/info/docs/variation/index.html]	SO:0001577	"A transcript variant with a complex INDEL- Insertion or deletion that spans an exon/intron border or a coding sequence/UTR border." [http://ensembl.org/info/docs/variation/index.html]	46450	\N	\N	sequence	0	SO	complex_transcript_variant	complex_transcript_variant
SO:0001576	SO:0001577	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001577	"A transcript variant with a complex INDEL- Insertion or deletion that spans an exon/intron border or a coding sequence/UTR border." [http://ensembl.org/info/docs/variation/index.html]	491200	\N	\N	sequence	1	SO	transcript_variant	complex_transcript_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001577	"A transcript variant with a complex INDEL- Insertion or deletion that spans an exon/intron border or a coding sequence/UTR border." [http://ensembl.org/info/docs/variation/index.html]	1073801	\N	\N	sequence	2	SO	gene_variant	complex_transcript_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001577	"A transcript variant with a complex INDEL- Insertion or deletion that spans an exon/intron border or a coding sequence/UTR border." [http://ensembl.org/info/docs/variation/index.html]	1904916	\N	\N	sequence	3	SO	feature_variant	complex_transcript_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001577	"A transcript variant with a complex INDEL- Insertion or deletion that spans an exon/intron border or a coding sequence/UTR border." [http://ensembl.org/info/docs/variation/index.html]	2929345	\N	\N	sequence	4	SO	structural_variant	complex_transcript_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001577	"A transcript variant with a complex INDEL- Insertion or deletion that spans an exon/intron border or a coding sequence/UTR border." [http://ensembl.org/info/docs/variation/index.html]	4002455	\N	\N	sequence	5	SO	sequence_variant	complex_transcript_variant
SO:0001578	\N	\N	"A sequence variant where at least one base of the terminator codon (stop) is changed, resulting in an elongated transcript." [SO:ke]	SO:0001578	"A sequence variant where at least one base of the terminator codon (stop) is changed, resulting in an elongated transcript." [SO:ke]	46451	\N	\N	sequence	0	SO	stop_lost	stop_lost
SO:0001590	SO:0001578	\N	"A sequence variant whereby at least one of the bases in the terminator codon is changed." [SO:ke]	SO:0001578	"A sequence variant where at least one base of the terminator codon (stop) is changed, resulting in an elongated transcript." [SO:ke]	491201	\N	\N	sequence	1	SO	terminator_codon_variant	stop_lost
SO:0001907	SO:0001578	\N	"A sequence variant that causes the extension of a genomic feature, with regard to the reference sequence." [SO:ke]	SO:0001578	"A sequence variant where at least one base of the terminator codon (stop) is changed, resulting in an elongated transcript." [SO:ke]	491202	\N	\N	sequence	1	SO	feature_elongation	stop_lost
SO:0001992	SO:0001578	\N	"A non-synonymous variant is an inframe, protein altering variant, resulting in a codon change." [SO:ke]	SO:0001578	"A sequence variant where at least one base of the terminator codon (stop) is changed, resulting in an elongated transcript." [SO:ke]	491203	\N	\N	sequence	1	SO	nonsynonymous_variant	stop_lost
SO:0001580	SO:0001590	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001578	"A sequence variant where at least one base of the terminator codon (stop) is changed, resulting in an elongated transcript." [SO:ke]	1073802	\N	\N	sequence	2	SO	coding_sequence_variant	stop_lost
SO:0001878	SO:0001907	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001578	"A sequence variant where at least one base of the terminator codon (stop) is changed, resulting in an elongated transcript." [SO:ke]	1073803	\N	\N	sequence	2	SO	feature_variant	stop_lost
SO:0001650	SO:0001992	\N	"A sequence variant which does not cause a disruption of the translational reading frame." [SO:ke]	SO:0001578	"A sequence variant where at least one base of the terminator codon (stop) is changed, resulting in an elongated transcript." [SO:ke]	1073804	\N	\N	sequence	2	SO	inframe_variant	stop_lost
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001578	"A sequence variant where at least one base of the terminator codon (stop) is changed, resulting in an elongated transcript." [SO:ke]	4002457	\N	\N	sequence	5	SO	exon_variant	stop_lost
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001578	"A sequence variant where at least one base of the terminator codon (stop) is changed, resulting in an elongated transcript." [SO:ke]	4002458	\N	\N	sequence	5	SO	coding_transcript_variant	stop_lost
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001578	"A sequence variant where at least one base of the terminator codon (stop) is changed, resulting in an elongated transcript." [SO:ke]	6550284	\N	\N	sequence	9	SO	structural_variant	stop_lost
SO:0001818	SO:0001650	\N	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	SO:0001578	"A sequence variant where at least one base of the terminator codon (stop) is changed, resulting in an elongated transcript." [SO:ke]	1904920	\N	\N	sequence	3	SO	protein_altering_variant	stop_lost
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001578	"A sequence variant where at least one base of the terminator codon (stop) is changed, resulting in an elongated transcript." [SO:ke]	4132330	\N	\N	sequence	6	SO	transcript_variant	stop_lost
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001578	"A sequence variant where at least one base of the terminator codon (stop) is changed, resulting in an elongated transcript." [SO:ke]	4132331	\N	\N	sequence	6	SO	transcript_variant	stop_lost
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001578	"A sequence variant where at least one base of the terminator codon (stop) is changed, resulting in an elongated transcript." [SO:ke]	6762340	\N	\N	sequence	10	SO	sequence_variant	stop_lost
SO:0001580	SO:0001818	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001578	"A sequence variant where at least one base of the terminator codon (stop) is changed, resulting in an elongated transcript." [SO:ke]	2929349	\N	\N	sequence	4	SO	coding_sequence_variant	stop_lost
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001578	"A sequence variant where at least one base of the terminator codon (stop) is changed, resulting in an elongated transcript." [SO:ke]	5180742	\N	\N	sequence	7	SO	gene_variant	stop_lost
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001578	"A sequence variant where at least one base of the terminator codon (stop) is changed, resulting in an elongated transcript." [SO:ke]	5996448	\N	\N	sequence	8	SO	feature_variant	stop_lost
SO:0001580	\N	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001580	"A sequence variant that changes the coding sequence." [SO:ke]	46452	\N	\N	sequence	0	SO	coding_sequence_variant	coding_sequence_variant
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001580	"A sequence variant that changes the coding sequence." [SO:ke]	491204	\N	\N	sequence	1	SO	exon_variant	coding_sequence_variant
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001580	"A sequence variant that changes the coding sequence." [SO:ke]	491205	\N	\N	sequence	1	SO	coding_transcript_variant	coding_sequence_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001580	"A sequence variant that changes the coding sequence." [SO:ke]	1073805	\N	\N	sequence	2	SO	transcript_variant	coding_sequence_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001580	"A sequence variant that changes the coding sequence." [SO:ke]	1073806	\N	\N	sequence	2	SO	transcript_variant	coding_sequence_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001580	"A sequence variant that changes the coding sequence." [SO:ke]	1904921	\N	\N	sequence	3	SO	gene_variant	coding_sequence_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001580	"A sequence variant that changes the coding sequence." [SO:ke]	2929350	\N	\N	sequence	4	SO	feature_variant	coding_sequence_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001580	"A sequence variant that changes the coding sequence." [SO:ke]	4002459	\N	\N	sequence	5	SO	structural_variant	coding_sequence_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001580	"A sequence variant that changes the coding sequence." [SO:ke]	4966741	\N	\N	sequence	6	SO	sequence_variant	coding_sequence_variant
SO:0001582	\N	\N	"A codon variant that changes at least one base of the first codon of a transcript." [SO:ke]	SO:0001582	"A codon variant that changes at least one base of the first codon of a transcript." [SO:ke]	46453	\N	\N	sequence	0	SO	initiator_codon_variant	initiator_codon_variant
SO:0001580	SO:0001582	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001582	"A codon variant that changes at least one base of the first codon of a transcript." [SO:ke]	491206	\N	\N	sequence	1	SO	coding_sequence_variant	initiator_codon_variant
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001582	"A codon variant that changes at least one base of the first codon of a transcript." [SO:ke]	1073807	\N	\N	sequence	2	SO	exon_variant	initiator_codon_variant
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001582	"A codon variant that changes at least one base of the first codon of a transcript." [SO:ke]	1073808	\N	\N	sequence	2	SO	coding_transcript_variant	initiator_codon_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001582	"A codon variant that changes at least one base of the first codon of a transcript." [SO:ke]	1904922	\N	\N	sequence	3	SO	transcript_variant	initiator_codon_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001582	"A codon variant that changes at least one base of the first codon of a transcript." [SO:ke]	1904923	\N	\N	sequence	3	SO	transcript_variant	initiator_codon_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001582	"A codon variant that changes at least one base of the first codon of a transcript." [SO:ke]	2929351	\N	\N	sequence	4	SO	gene_variant	initiator_codon_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001582	"A codon variant that changes at least one base of the first codon of a transcript." [SO:ke]	4002460	\N	\N	sequence	5	SO	feature_variant	initiator_codon_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001582	"A codon variant that changes at least one base of the first codon of a transcript." [SO:ke]	4966742	\N	\N	sequence	6	SO	structural_variant	initiator_codon_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001582	"A codon variant that changes at least one base of the first codon of a transcript." [SO:ke]	5741351	\N	\N	sequence	7	SO	sequence_variant	initiator_codon_variant
SO:0001583	\N	\N	"A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preserved." [EBI:fc, EBI:gr, SO:ke]	SO:0001583	"A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preserved." [EBI:fc, EBI:gr, SO:ke]	46454	\N	\N	sequence	0	SO	missense_variant	missense_variant
SO:0001992	SO:0001583	\N	"A non-synonymous variant is an inframe, protein altering variant, resulting in a codon change." [SO:ke]	SO:0001583	"A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preserved." [EBI:fc, EBI:gr, SO:ke]	491207	\N	\N	sequence	1	SO	nonsynonymous_variant	missense_variant
SO:0001650	SO:0001992	\N	"A sequence variant which does not cause a disruption of the translational reading frame." [SO:ke]	SO:0001583	"A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preserved." [EBI:fc, EBI:gr, SO:ke]	1073809	\N	\N	sequence	2	SO	inframe_variant	missense_variant
SO:0001818	SO:0001650	\N	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	SO:0001583	"A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preserved." [EBI:fc, EBI:gr, SO:ke]	1904924	\N	\N	sequence	3	SO	protein_altering_variant	missense_variant
SO:0001580	SO:0001818	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001583	"A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preserved." [EBI:fc, EBI:gr, SO:ke]	2929352	\N	\N	sequence	4	SO	coding_sequence_variant	missense_variant
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001583	"A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preserved." [EBI:fc, EBI:gr, SO:ke]	4002461	\N	\N	sequence	5	SO	exon_variant	missense_variant
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001583	"A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preserved." [EBI:fc, EBI:gr, SO:ke]	4002462	\N	\N	sequence	5	SO	coding_transcript_variant	missense_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001583	"A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preserved." [EBI:fc, EBI:gr, SO:ke]	4966743	\N	\N	sequence	6	SO	transcript_variant	missense_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001583	"A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preserved." [EBI:fc, EBI:gr, SO:ke]	4966744	\N	\N	sequence	6	SO	transcript_variant	missense_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001583	"A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preserved." [EBI:fc, EBI:gr, SO:ke]	5741352	\N	\N	sequence	7	SO	gene_variant	missense_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001583	"A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preserved." [EBI:fc, EBI:gr, SO:ke]	6311121	\N	\N	sequence	8	SO	feature_variant	missense_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001583	"A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preserved." [EBI:fc, EBI:gr, SO:ke]	6699373	\N	\N	sequence	9	SO	structural_variant	missense_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001583	"A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preserved." [EBI:fc, EBI:gr, SO:ke]	6948091	\N	\N	sequence	10	SO	sequence_variant	missense_variant
SO:0001585	\N	\N	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for a different but similar amino acid. These variants may or may not be deleterious." [SO:ke]	SO:0001585	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for a different but similar amino acid. These variants may or may not be deleterious." [SO:ke]	46455	\N	\N	sequence	0	SO	conservative_missense_variant	conservative_missense_variant
SO:0001583	SO:0001585	\N	"A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preserved." [EBI:fc, EBI:gr, SO:ke]	SO:0001585	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for a different but similar amino acid. These variants may or may not be deleterious." [SO:ke]	491208	\N	\N	sequence	1	SO	missense_variant	conservative_missense_variant
SO:0001992	SO:0001583	\N	"A non-synonymous variant is an inframe, protein altering variant, resulting in a codon change." [SO:ke]	SO:0001585	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for a different but similar amino acid. These variants may or may not be deleterious." [SO:ke]	1073810	\N	\N	sequence	2	SO	nonsynonymous_variant	conservative_missense_variant
SO:0001650	SO:0001992	\N	"A sequence variant which does not cause a disruption of the translational reading frame." [SO:ke]	SO:0001585	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for a different but similar amino acid. These variants may or may not be deleterious." [SO:ke]	1904925	\N	\N	sequence	3	SO	inframe_variant	conservative_missense_variant
SO:0001818	SO:0001650	\N	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	SO:0001585	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for a different but similar amino acid. These variants may or may not be deleterious." [SO:ke]	2929353	\N	\N	sequence	4	SO	protein_altering_variant	conservative_missense_variant
SO:0001580	SO:0001818	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001585	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for a different but similar amino acid. These variants may or may not be deleterious." [SO:ke]	4002463	\N	\N	sequence	5	SO	coding_sequence_variant	conservative_missense_variant
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001585	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for a different but similar amino acid. These variants may or may not be deleterious." [SO:ke]	4966745	\N	\N	sequence	6	SO	exon_variant	conservative_missense_variant
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001585	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for a different but similar amino acid. These variants may or may not be deleterious." [SO:ke]	4966746	\N	\N	sequence	6	SO	coding_transcript_variant	conservative_missense_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001585	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for a different but similar amino acid. These variants may or may not be deleterious." [SO:ke]	5741353	\N	\N	sequence	7	SO	transcript_variant	conservative_missense_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001585	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for a different but similar amino acid. These variants may or may not be deleterious." [SO:ke]	5741354	\N	\N	sequence	7	SO	transcript_variant	conservative_missense_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001585	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for a different but similar amino acid. These variants may or may not be deleterious." [SO:ke]	6311122	\N	\N	sequence	8	SO	gene_variant	conservative_missense_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001585	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for a different but similar amino acid. These variants may or may not be deleterious." [SO:ke]	6699374	\N	\N	sequence	9	SO	feature_variant	conservative_missense_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001585	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for a different but similar amino acid. These variants may or may not be deleterious." [SO:ke]	6948092	\N	\N	sequence	10	SO	structural_variant	conservative_missense_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001585	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for a different but similar amino acid. These variants may or may not be deleterious." [SO:ke]	7105121	\N	\N	sequence	11	SO	sequence_variant	conservative_missense_variant
SO:0001586	\N	\N	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for an amino acid with different biochemical properties." [SO:ke]	SO:0001586	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for an amino acid with different biochemical properties." [SO:ke]	46456	\N	\N	sequence	0	SO	non_conservative_missense_variant	non_conservative_missense_variant
SO:0001583	SO:0001586	\N	"A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preserved." [EBI:fc, EBI:gr, SO:ke]	SO:0001586	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for an amino acid with different biochemical properties." [SO:ke]	491209	\N	\N	sequence	1	SO	missense_variant	non_conservative_missense_variant
SO:0001992	SO:0001583	\N	"A non-synonymous variant is an inframe, protein altering variant, resulting in a codon change." [SO:ke]	SO:0001586	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for an amino acid with different biochemical properties." [SO:ke]	1073811	\N	\N	sequence	2	SO	nonsynonymous_variant	non_conservative_missense_variant
SO:0001650	SO:0001992	\N	"A sequence variant which does not cause a disruption of the translational reading frame." [SO:ke]	SO:0001586	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for an amino acid with different biochemical properties." [SO:ke]	1904926	\N	\N	sequence	3	SO	inframe_variant	non_conservative_missense_variant
SO:0001818	SO:0001650	\N	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	SO:0001586	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for an amino acid with different biochemical properties." [SO:ke]	2929354	\N	\N	sequence	4	SO	protein_altering_variant	non_conservative_missense_variant
SO:0001580	SO:0001818	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001586	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for an amino acid with different biochemical properties." [SO:ke]	4002464	\N	\N	sequence	5	SO	coding_sequence_variant	non_conservative_missense_variant
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001586	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for an amino acid with different biochemical properties." [SO:ke]	4966747	\N	\N	sequence	6	SO	exon_variant	non_conservative_missense_variant
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001586	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for an amino acid with different biochemical properties." [SO:ke]	4966748	\N	\N	sequence	6	SO	coding_transcript_variant	non_conservative_missense_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001586	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for an amino acid with different biochemical properties." [SO:ke]	5741355	\N	\N	sequence	7	SO	transcript_variant	non_conservative_missense_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001586	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for an amino acid with different biochemical properties." [SO:ke]	5741356	\N	\N	sequence	7	SO	transcript_variant	non_conservative_missense_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001586	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for an amino acid with different biochemical properties." [SO:ke]	6311123	\N	\N	sequence	8	SO	gene_variant	non_conservative_missense_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001586	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for an amino acid with different biochemical properties." [SO:ke]	6699375	\N	\N	sequence	9	SO	feature_variant	non_conservative_missense_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001586	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for an amino acid with different biochemical properties." [SO:ke]	6948093	\N	\N	sequence	10	SO	structural_variant	non_conservative_missense_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001586	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for an amino acid with different biochemical properties." [SO:ke]	7105122	\N	\N	sequence	11	SO	sequence_variant	non_conservative_missense_variant
SO:0001587	\N	\N	"A sequence variant whereby at least one base of a codon is changed, resulting in a premature stop codon, leading to a shortened polypeptide." [SO:ke]	SO:0001587	"A sequence variant whereby at least one base of a codon is changed, resulting in a premature stop codon, leading to a shortened polypeptide." [SO:ke]	46457	\N	\N	sequence	0	SO	stop_gained	stop_gained
SO:0001906	SO:0001587	\N	"A sequence variant that causes the reduction of a genomic feature, with regard to the reference sequence." [SO:ke]	SO:0001587	"A sequence variant whereby at least one base of a codon is changed, resulting in a premature stop codon, leading to a shortened polypeptide." [SO:ke]	491210	\N	\N	sequence	1	SO	feature_truncation	stop_gained
SO:0001992	SO:0001587	\N	"A non-synonymous variant is an inframe, protein altering variant, resulting in a codon change." [SO:ke]	SO:0001587	"A sequence variant whereby at least one base of a codon is changed, resulting in a premature stop codon, leading to a shortened polypeptide." [SO:ke]	491211	\N	\N	sequence	1	SO	nonsynonymous_variant	stop_gained
SO:0001878	SO:0001906	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001587	"A sequence variant whereby at least one base of a codon is changed, resulting in a premature stop codon, leading to a shortened polypeptide." [SO:ke]	1073812	\N	\N	sequence	2	SO	feature_variant	stop_gained
SO:0001650	SO:0001992	\N	"A sequence variant which does not cause a disruption of the translational reading frame." [SO:ke]	SO:0001587	"A sequence variant whereby at least one base of a codon is changed, resulting in a premature stop codon, leading to a shortened polypeptide." [SO:ke]	1073813	\N	\N	sequence	2	SO	inframe_variant	stop_gained
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001587	"A sequence variant whereby at least one base of a codon is changed, resulting in a premature stop codon, leading to a shortened polypeptide." [SO:ke]	6699376	\N	\N	sequence	9	SO	structural_variant	stop_gained
SO:0001818	SO:0001650	\N	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	SO:0001587	"A sequence variant whereby at least one base of a codon is changed, resulting in a premature stop codon, leading to a shortened polypeptide." [SO:ke]	1904928	\N	\N	sequence	3	SO	protein_altering_variant	stop_gained
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001587	"A sequence variant whereby at least one base of a codon is changed, resulting in a premature stop codon, leading to a shortened polypeptide." [SO:ke]	6762341	\N	\N	sequence	10	SO	sequence_variant	stop_gained
SO:0001580	SO:0001818	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001587	"A sequence variant whereby at least one base of a codon is changed, resulting in a premature stop codon, leading to a shortened polypeptide." [SO:ke]	2929356	\N	\N	sequence	4	SO	coding_sequence_variant	stop_gained
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001587	"A sequence variant whereby at least one base of a codon is changed, resulting in a premature stop codon, leading to a shortened polypeptide." [SO:ke]	4002465	\N	\N	sequence	5	SO	exon_variant	stop_gained
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001587	"A sequence variant whereby at least one base of a codon is changed, resulting in a premature stop codon, leading to a shortened polypeptide." [SO:ke]	4002466	\N	\N	sequence	5	SO	coding_transcript_variant	stop_gained
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001587	"A sequence variant whereby at least one base of a codon is changed, resulting in a premature stop codon, leading to a shortened polypeptide." [SO:ke]	4966749	\N	\N	sequence	6	SO	transcript_variant	stop_gained
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001587	"A sequence variant whereby at least one base of a codon is changed, resulting in a premature stop codon, leading to a shortened polypeptide." [SO:ke]	4966750	\N	\N	sequence	6	SO	transcript_variant	stop_gained
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001587	"A sequence variant whereby at least one base of a codon is changed, resulting in a premature stop codon, leading to a shortened polypeptide." [SO:ke]	5741357	\N	\N	sequence	7	SO	gene_variant	stop_gained
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001587	"A sequence variant whereby at least one base of a codon is changed, resulting in a premature stop codon, leading to a shortened polypeptide." [SO:ke]	6311124	\N	\N	sequence	8	SO	feature_variant	stop_gained
SO:0001589	\N	\N	"A sequence variant which causes a disruption of the translational reading frame, because the number of nucleotides inserted or deleted is not a multiple of three." [SO:ke]	SO:0001589	"A sequence variant which causes a disruption of the translational reading frame, because the number of nucleotides inserted or deleted is not a multiple of three." [SO:ke]	46458	\N	\N	sequence	0	SO	frameshift_variant	frameshift_variant
SO:0001818	SO:0001589	\N	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	SO:0001589	"A sequence variant which causes a disruption of the translational reading frame, because the number of nucleotides inserted or deleted is not a multiple of three." [SO:ke]	491212	\N	\N	sequence	1	SO	protein_altering_variant	frameshift_variant
SO:0001580	SO:0001818	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001589	"A sequence variant which causes a disruption of the translational reading frame, because the number of nucleotides inserted or deleted is not a multiple of three." [SO:ke]	1073814	\N	\N	sequence	2	SO	coding_sequence_variant	frameshift_variant
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001589	"A sequence variant which causes a disruption of the translational reading frame, because the number of nucleotides inserted or deleted is not a multiple of three." [SO:ke]	1904929	\N	\N	sequence	3	SO	exon_variant	frameshift_variant
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001589	"A sequence variant which causes a disruption of the translational reading frame, because the number of nucleotides inserted or deleted is not a multiple of three." [SO:ke]	1904930	\N	\N	sequence	3	SO	coding_transcript_variant	frameshift_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001589	"A sequence variant which causes a disruption of the translational reading frame, because the number of nucleotides inserted or deleted is not a multiple of three." [SO:ke]	2929357	\N	\N	sequence	4	SO	transcript_variant	frameshift_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001589	"A sequence variant which causes a disruption of the translational reading frame, because the number of nucleotides inserted or deleted is not a multiple of three." [SO:ke]	2929358	\N	\N	sequence	4	SO	transcript_variant	frameshift_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001589	"A sequence variant which causes a disruption of the translational reading frame, because the number of nucleotides inserted or deleted is not a multiple of three." [SO:ke]	4002467	\N	\N	sequence	5	SO	gene_variant	frameshift_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001589	"A sequence variant which causes a disruption of the translational reading frame, because the number of nucleotides inserted or deleted is not a multiple of three." [SO:ke]	4966751	\N	\N	sequence	6	SO	feature_variant	frameshift_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001589	"A sequence variant which causes a disruption of the translational reading frame, because the number of nucleotides inserted or deleted is not a multiple of three." [SO:ke]	5741358	\N	\N	sequence	7	SO	structural_variant	frameshift_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001589	"A sequence variant which causes a disruption of the translational reading frame, because the number of nucleotides inserted or deleted is not a multiple of three." [SO:ke]	6311125	\N	\N	sequence	8	SO	sequence_variant	frameshift_variant
SO:0001590	\N	\N	"A sequence variant whereby at least one of the bases in the terminator codon is changed." [SO:ke]	SO:0001590	"A sequence variant whereby at least one of the bases in the terminator codon is changed." [SO:ke]	46459	\N	\N	sequence	0	SO	terminator_codon_variant	terminator_codon_variant
SO:0001580	SO:0001590	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001590	"A sequence variant whereby at least one of the bases in the terminator codon is changed." [SO:ke]	491213	\N	\N	sequence	1	SO	coding_sequence_variant	terminator_codon_variant
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001590	"A sequence variant whereby at least one of the bases in the terminator codon is changed." [SO:ke]	1073815	\N	\N	sequence	2	SO	exon_variant	terminator_codon_variant
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001590	"A sequence variant whereby at least one of the bases in the terminator codon is changed." [SO:ke]	1073816	\N	\N	sequence	2	SO	coding_transcript_variant	terminator_codon_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001590	"A sequence variant whereby at least one of the bases in the terminator codon is changed." [SO:ke]	1904931	\N	\N	sequence	3	SO	transcript_variant	terminator_codon_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001590	"A sequence variant whereby at least one of the bases in the terminator codon is changed." [SO:ke]	1904932	\N	\N	sequence	3	SO	transcript_variant	terminator_codon_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001590	"A sequence variant whereby at least one of the bases in the terminator codon is changed." [SO:ke]	2929359	\N	\N	sequence	4	SO	gene_variant	terminator_codon_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001590	"A sequence variant whereby at least one of the bases in the terminator codon is changed." [SO:ke]	4002468	\N	\N	sequence	5	SO	feature_variant	terminator_codon_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001590	"A sequence variant whereby at least one of the bases in the terminator codon is changed." [SO:ke]	4966752	\N	\N	sequence	6	SO	structural_variant	terminator_codon_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001590	"A sequence variant whereby at least one of the bases in the terminator codon is changed." [SO:ke]	5741359	\N	\N	sequence	7	SO	sequence_variant	terminator_codon_variant
SO:0001591	\N	\N	"A sequence variant that reverts the sequence of a previous frameshift mutation back to the initial frame." [SO:ke]	SO:0001591	"A sequence variant that reverts the sequence of a previous frameshift mutation back to the initial frame." [SO:ke]	46460	\N	\N	sequence	0	SO	frame_restoring_variant	frame_restoring_variant
SO:0001589	SO:0001591	\N	"A sequence variant which causes a disruption of the translational reading frame, because the number of nucleotides inserted or deleted is not a multiple of three." [SO:ke]	SO:0001591	"A sequence variant that reverts the sequence of a previous frameshift mutation back to the initial frame." [SO:ke]	491214	\N	\N	sequence	1	SO	frameshift_variant	frame_restoring_variant
SO:0001818	SO:0001589	\N	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	SO:0001591	"A sequence variant that reverts the sequence of a previous frameshift mutation back to the initial frame." [SO:ke]	1073817	\N	\N	sequence	2	SO	protein_altering_variant	frame_restoring_variant
SO:0001580	SO:0001818	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001591	"A sequence variant that reverts the sequence of a previous frameshift mutation back to the initial frame." [SO:ke]	1904933	\N	\N	sequence	3	SO	coding_sequence_variant	frame_restoring_variant
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001591	"A sequence variant that reverts the sequence of a previous frameshift mutation back to the initial frame." [SO:ke]	2929360	\N	\N	sequence	4	SO	exon_variant	frame_restoring_variant
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001591	"A sequence variant that reverts the sequence of a previous frameshift mutation back to the initial frame." [SO:ke]	2929361	\N	\N	sequence	4	SO	coding_transcript_variant	frame_restoring_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001591	"A sequence variant that reverts the sequence of a previous frameshift mutation back to the initial frame." [SO:ke]	4002469	\N	\N	sequence	5	SO	transcript_variant	frame_restoring_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001591	"A sequence variant that reverts the sequence of a previous frameshift mutation back to the initial frame." [SO:ke]	4002470	\N	\N	sequence	5	SO	transcript_variant	frame_restoring_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001591	"A sequence variant that reverts the sequence of a previous frameshift mutation back to the initial frame." [SO:ke]	4966753	\N	\N	sequence	6	SO	gene_variant	frame_restoring_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001591	"A sequence variant that reverts the sequence of a previous frameshift mutation back to the initial frame." [SO:ke]	5741360	\N	\N	sequence	7	SO	feature_variant	frame_restoring_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001591	"A sequence variant that reverts the sequence of a previous frameshift mutation back to the initial frame." [SO:ke]	6311126	\N	\N	sequence	8	SO	structural_variant	frame_restoring_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001591	"A sequence variant that reverts the sequence of a previous frameshift mutation back to the initial frame." [SO:ke]	6699377	\N	\N	sequence	9	SO	sequence_variant	frame_restoring_variant
SO:0001592	\N	\N	"A sequence variant which causes a disruption of the translational reading frame, by shifting one base ahead." [http://arjournals.annualreviews.org/doi/pdf/10.1146/annurev.ge.08.120174.001535]	SO:0001592	"A sequence variant which causes a disruption of the translational reading frame, by shifting one base ahead." [http://arjournals.annualreviews.org/doi/pdf/10.1146/annurev.ge.08.120174.001535]	46461	\N	\N	sequence	0	SO	minus_1_frameshift_variant	minus_1_frameshift_variant
SO:0001589	SO:0001592	\N	"A sequence variant which causes a disruption of the translational reading frame, because the number of nucleotides inserted or deleted is not a multiple of three." [SO:ke]	SO:0001592	"A sequence variant which causes a disruption of the translational reading frame, by shifting one base ahead." [http://arjournals.annualreviews.org/doi/pdf/10.1146/annurev.ge.08.120174.001535]	491215	\N	\N	sequence	1	SO	frameshift_variant	minus_1_frameshift_variant
SO:0001818	SO:0001589	\N	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	SO:0001592	"A sequence variant which causes a disruption of the translational reading frame, by shifting one base ahead." [http://arjournals.annualreviews.org/doi/pdf/10.1146/annurev.ge.08.120174.001535]	1073818	\N	\N	sequence	2	SO	protein_altering_variant	minus_1_frameshift_variant
SO:0001580	SO:0001818	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001592	"A sequence variant which causes a disruption of the translational reading frame, by shifting one base ahead." [http://arjournals.annualreviews.org/doi/pdf/10.1146/annurev.ge.08.120174.001535]	1904934	\N	\N	sequence	3	SO	coding_sequence_variant	minus_1_frameshift_variant
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001592	"A sequence variant which causes a disruption of the translational reading frame, by shifting one base ahead." [http://arjournals.annualreviews.org/doi/pdf/10.1146/annurev.ge.08.120174.001535]	2929362	\N	\N	sequence	4	SO	exon_variant	minus_1_frameshift_variant
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001592	"A sequence variant which causes a disruption of the translational reading frame, by shifting one base ahead." [http://arjournals.annualreviews.org/doi/pdf/10.1146/annurev.ge.08.120174.001535]	2929363	\N	\N	sequence	4	SO	coding_transcript_variant	minus_1_frameshift_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001592	"A sequence variant which causes a disruption of the translational reading frame, by shifting one base ahead." [http://arjournals.annualreviews.org/doi/pdf/10.1146/annurev.ge.08.120174.001535]	4002471	\N	\N	sequence	5	SO	transcript_variant	minus_1_frameshift_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001592	"A sequence variant which causes a disruption of the translational reading frame, by shifting one base ahead." [http://arjournals.annualreviews.org/doi/pdf/10.1146/annurev.ge.08.120174.001535]	4002472	\N	\N	sequence	5	SO	transcript_variant	minus_1_frameshift_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001592	"A sequence variant which causes a disruption of the translational reading frame, by shifting one base ahead." [http://arjournals.annualreviews.org/doi/pdf/10.1146/annurev.ge.08.120174.001535]	4966754	\N	\N	sequence	6	SO	gene_variant	minus_1_frameshift_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001592	"A sequence variant which causes a disruption of the translational reading frame, by shifting one base ahead." [http://arjournals.annualreviews.org/doi/pdf/10.1146/annurev.ge.08.120174.001535]	5741361	\N	\N	sequence	7	SO	feature_variant	minus_1_frameshift_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001592	"A sequence variant which causes a disruption of the translational reading frame, by shifting one base ahead." [http://arjournals.annualreviews.org/doi/pdf/10.1146/annurev.ge.08.120174.001535]	6311127	\N	\N	sequence	8	SO	structural_variant	minus_1_frameshift_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001592	"A sequence variant which causes a disruption of the translational reading frame, by shifting one base ahead." [http://arjournals.annualreviews.org/doi/pdf/10.1146/annurev.ge.08.120174.001535]	6699378	\N	\N	sequence	9	SO	sequence_variant	minus_1_frameshift_variant
SO:0001593	\N	\N	"" []	SO:0001593	"" []	46462	\N	\N	sequence	0	SO	minus_2_frameshift_variant	minus_2_frameshift_variant
SO:0001589	SO:0001593	\N	"A sequence variant which causes a disruption of the translational reading frame, because the number of nucleotides inserted or deleted is not a multiple of three." [SO:ke]	SO:0001593	"" []	491216	\N	\N	sequence	1	SO	frameshift_variant	minus_2_frameshift_variant
SO:0001818	SO:0001589	\N	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	SO:0001593	"" []	1073819	\N	\N	sequence	2	SO	protein_altering_variant	minus_2_frameshift_variant
SO:0001580	SO:0001818	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001593	"" []	1904935	\N	\N	sequence	3	SO	coding_sequence_variant	minus_2_frameshift_variant
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001593	"" []	2929364	\N	\N	sequence	4	SO	exon_variant	minus_2_frameshift_variant
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001593	"" []	2929365	\N	\N	sequence	4	SO	coding_transcript_variant	minus_2_frameshift_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001593	"" []	4002473	\N	\N	sequence	5	SO	transcript_variant	minus_2_frameshift_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001593	"" []	4002474	\N	\N	sequence	5	SO	transcript_variant	minus_2_frameshift_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001593	"" []	4966755	\N	\N	sequence	6	SO	gene_variant	minus_2_frameshift_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001593	"" []	5741362	\N	\N	sequence	7	SO	feature_variant	minus_2_frameshift_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001593	"" []	6311128	\N	\N	sequence	8	SO	structural_variant	minus_2_frameshift_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001593	"" []	6699379	\N	\N	sequence	9	SO	sequence_variant	minus_2_frameshift_variant
SO:0001594	\N	\N	"A sequence variant which causes a disruption of the translational reading frame, by shifting one base backward." [http://arjournals.annualreviews.org/doi/pdf/10.1146/annurev.ge.08.120174.001535]	SO:0001594	"A sequence variant which causes a disruption of the translational reading frame, by shifting one base backward." [http://arjournals.annualreviews.org/doi/pdf/10.1146/annurev.ge.08.120174.001535]	46463	\N	\N	sequence	0	SO	plus_1_frameshift_variant	plus_1_frameshift_variant
SO:0001589	SO:0001594	\N	"A sequence variant which causes a disruption of the translational reading frame, because the number of nucleotides inserted or deleted is not a multiple of three." [SO:ke]	SO:0001594	"A sequence variant which causes a disruption of the translational reading frame, by shifting one base backward." [http://arjournals.annualreviews.org/doi/pdf/10.1146/annurev.ge.08.120174.001535]	491217	\N	\N	sequence	1	SO	frameshift_variant	plus_1_frameshift_variant
SO:0001818	SO:0001589	\N	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	SO:0001594	"A sequence variant which causes a disruption of the translational reading frame, by shifting one base backward." [http://arjournals.annualreviews.org/doi/pdf/10.1146/annurev.ge.08.120174.001535]	1073820	\N	\N	sequence	2	SO	protein_altering_variant	plus_1_frameshift_variant
SO:0001580	SO:0001818	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001594	"A sequence variant which causes a disruption of the translational reading frame, by shifting one base backward." [http://arjournals.annualreviews.org/doi/pdf/10.1146/annurev.ge.08.120174.001535]	1904936	\N	\N	sequence	3	SO	coding_sequence_variant	plus_1_frameshift_variant
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001594	"A sequence variant which causes a disruption of the translational reading frame, by shifting one base backward." [http://arjournals.annualreviews.org/doi/pdf/10.1146/annurev.ge.08.120174.001535]	2929366	\N	\N	sequence	4	SO	exon_variant	plus_1_frameshift_variant
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001594	"A sequence variant which causes a disruption of the translational reading frame, by shifting one base backward." [http://arjournals.annualreviews.org/doi/pdf/10.1146/annurev.ge.08.120174.001535]	2929367	\N	\N	sequence	4	SO	coding_transcript_variant	plus_1_frameshift_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001594	"A sequence variant which causes a disruption of the translational reading frame, by shifting one base backward." [http://arjournals.annualreviews.org/doi/pdf/10.1146/annurev.ge.08.120174.001535]	4002475	\N	\N	sequence	5	SO	transcript_variant	plus_1_frameshift_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001594	"A sequence variant which causes a disruption of the translational reading frame, by shifting one base backward." [http://arjournals.annualreviews.org/doi/pdf/10.1146/annurev.ge.08.120174.001535]	4002476	\N	\N	sequence	5	SO	transcript_variant	plus_1_frameshift_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001594	"A sequence variant which causes a disruption of the translational reading frame, by shifting one base backward." [http://arjournals.annualreviews.org/doi/pdf/10.1146/annurev.ge.08.120174.001535]	4966756	\N	\N	sequence	6	SO	gene_variant	plus_1_frameshift_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001594	"A sequence variant which causes a disruption of the translational reading frame, by shifting one base backward." [http://arjournals.annualreviews.org/doi/pdf/10.1146/annurev.ge.08.120174.001535]	5741363	\N	\N	sequence	7	SO	feature_variant	plus_1_frameshift_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001594	"A sequence variant which causes a disruption of the translational reading frame, by shifting one base backward." [http://arjournals.annualreviews.org/doi/pdf/10.1146/annurev.ge.08.120174.001535]	6311129	\N	\N	sequence	8	SO	structural_variant	plus_1_frameshift_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001594	"A sequence variant which causes a disruption of the translational reading frame, by shifting one base backward." [http://arjournals.annualreviews.org/doi/pdf/10.1146/annurev.ge.08.120174.001535]	6699380	\N	\N	sequence	9	SO	sequence_variant	plus_1_frameshift_variant
SO:0001595	\N	\N	"" []	SO:0001595	"" []	46464	\N	\N	sequence	0	SO	plus_2_frameshift_variant	plus_2_frameshift_variant
SO:0001589	SO:0001595	\N	"A sequence variant which causes a disruption of the translational reading frame, because the number of nucleotides inserted or deleted is not a multiple of three." [SO:ke]	SO:0001595	"" []	491218	\N	\N	sequence	1	SO	frameshift_variant	plus_2_frameshift_variant
SO:0001818	SO:0001589	\N	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	SO:0001595	"" []	1073821	\N	\N	sequence	2	SO	protein_altering_variant	plus_2_frameshift_variant
SO:0001580	SO:0001818	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001595	"" []	1904937	\N	\N	sequence	3	SO	coding_sequence_variant	plus_2_frameshift_variant
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001595	"" []	2929368	\N	\N	sequence	4	SO	exon_variant	plus_2_frameshift_variant
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001595	"" []	2929369	\N	\N	sequence	4	SO	coding_transcript_variant	plus_2_frameshift_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001595	"" []	4002477	\N	\N	sequence	5	SO	transcript_variant	plus_2_frameshift_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001595	"" []	4002478	\N	\N	sequence	5	SO	transcript_variant	plus_2_frameshift_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001595	"" []	4966757	\N	\N	sequence	6	SO	gene_variant	plus_2_frameshift_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001595	"" []	5741364	\N	\N	sequence	7	SO	feature_variant	plus_2_frameshift_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001595	"" []	6311130	\N	\N	sequence	8	SO	structural_variant	plus_2_frameshift_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001595	"" []	6699381	\N	\N	sequence	9	SO	sequence_variant	plus_2_frameshift_variant
SO:0001596	\N	\N	"A sequence variant within a transcript that changes the secondary structure of the RNA product." [SO:ke]	SO:0001596	"A sequence variant within a transcript that changes the secondary structure of the RNA product." [SO:ke]	46465	\N	\N	sequence	0	SO	transcript_secondary_structure_variant	transcript_secondary_structure_variant
SO:0001576	SO:0001596	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001596	"A sequence variant within a transcript that changes the secondary structure of the RNA product." [SO:ke]	491219	\N	\N	sequence	1	SO	transcript_variant	transcript_secondary_structure_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001596	"A sequence variant within a transcript that changes the secondary structure of the RNA product." [SO:ke]	1073822	\N	\N	sequence	2	SO	gene_variant	transcript_secondary_structure_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001596	"A sequence variant within a transcript that changes the secondary structure of the RNA product." [SO:ke]	1904938	\N	\N	sequence	3	SO	feature_variant	transcript_secondary_structure_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001596	"A sequence variant within a transcript that changes the secondary structure of the RNA product." [SO:ke]	2929370	\N	\N	sequence	4	SO	structural_variant	transcript_secondary_structure_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001596	"A sequence variant within a transcript that changes the secondary structure of the RNA product." [SO:ke]	4002479	\N	\N	sequence	5	SO	sequence_variant	transcript_secondary_structure_variant
SO:0001597	\N	\N	"A secondary structure variant that compensate for the change made by a previous variant." [SO:ke]	SO:0001597	"A secondary structure variant that compensate for the change made by a previous variant." [SO:ke]	46466	\N	\N	sequence	0	SO	compensatory_transcript_secondary_structure_variant	compensatory_transcript_secondary_structure_variant
SO:0001596	SO:0001597	\N	"A sequence variant within a transcript that changes the secondary structure of the RNA product." [SO:ke]	SO:0001597	"A secondary structure variant that compensate for the change made by a previous variant." [SO:ke]	491220	\N	\N	sequence	1	SO	transcript_secondary_structure_variant	compensatory_transcript_secondary_structure_variant
SO:0001576	SO:0001596	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001597	"A secondary structure variant that compensate for the change made by a previous variant." [SO:ke]	1073823	\N	\N	sequence	2	SO	transcript_variant	compensatory_transcript_secondary_structure_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001597	"A secondary structure variant that compensate for the change made by a previous variant." [SO:ke]	1904939	\N	\N	sequence	3	SO	gene_variant	compensatory_transcript_secondary_structure_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001597	"A secondary structure variant that compensate for the change made by a previous variant." [SO:ke]	2929371	\N	\N	sequence	4	SO	feature_variant	compensatory_transcript_secondary_structure_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001597	"A secondary structure variant that compensate for the change made by a previous variant." [SO:ke]	4002480	\N	\N	sequence	5	SO	structural_variant	compensatory_transcript_secondary_structure_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001597	"A secondary structure variant that compensate for the change made by a previous variant." [SO:ke]	4966758	\N	\N	sequence	6	SO	sequence_variant	compensatory_transcript_secondary_structure_variant
SO:0001598	\N	\N	"A sequence variant within the transcript that changes the structure of the translational product." [SO:ke]	SO:0001598	"A sequence variant within the transcript that changes the structure of the translational product." [SO:ke]	46467	\N	\N	sequence	0	SO	translational_product_structure_variant	translational_product_structure_variant
SO:0001564	SO:0001598	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001598	"A sequence variant within the transcript that changes the structure of the translational product." [SO:ke]	491221	\N	\N	sequence	1	SO	gene_variant	translational_product_structure_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001598	"A sequence variant within the transcript that changes the structure of the translational product." [SO:ke]	1073824	\N	\N	sequence	2	SO	feature_variant	translational_product_structure_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001598	"A sequence variant within the transcript that changes the structure of the translational product." [SO:ke]	1904940	\N	\N	sequence	3	SO	structural_variant	translational_product_structure_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001598	"A sequence variant within the transcript that changes the structure of the translational product." [SO:ke]	2929372	\N	\N	sequence	4	SO	sequence_variant	translational_product_structure_variant
SO:0001599	\N	\N	"A sequence variant that changes the resulting polypeptide structure." [SO:ke]	SO:0001599	"A sequence variant that changes the resulting polypeptide structure." [SO:ke]	46468	\N	\N	sequence	0	SO	3D_polypeptide_structure_variant	3D_polypeptide_structure_variant
SO:0001539	SO:0001599	\N	"A sequence variant that affects the functioning of a translational product with respect to a reference sequence." [SO:ke]	SO:0001599	"A sequence variant that changes the resulting polypeptide structure." [SO:ke]	491222	\N	\N	sequence	1	SO	translational_product_function_variant	3D_polypeptide_structure_variant
SO:0001536	SO:0001539	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001599	"A sequence variant that changes the resulting polypeptide structure." [SO:ke]	1073825	\N	\N	sequence	2	SO	functional_variant	3D_polypeptide_structure_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001599	"A sequence variant that changes the resulting polypeptide structure." [SO:ke]	1904941	\N	\N	sequence	3	SO	sequence_variant	3D_polypeptide_structure_variant
SO:0001600	\N	\N	"A sequence variant that changes the resulting polypeptide structure." [SO:ke]	SO:0001600	"A sequence variant that changes the resulting polypeptide structure." [SO:ke]	46469	\N	\N	sequence	0	SO	complex_3D_structural_variant	complex_3D_structural_variant
SO:0001599	SO:0001600	\N	"A sequence variant that changes the resulting polypeptide structure." [SO:ke]	SO:0001600	"A sequence variant that changes the resulting polypeptide structure." [SO:ke]	491223	\N	\N	sequence	1	SO	3D_polypeptide_structure_variant	complex_3D_structural_variant
SO:0001539	SO:0001599	\N	"A sequence variant that affects the functioning of a translational product with respect to a reference sequence." [SO:ke]	SO:0001600	"A sequence variant that changes the resulting polypeptide structure." [SO:ke]	1073826	\N	\N	sequence	2	SO	translational_product_function_variant	complex_3D_structural_variant
SO:0001536	SO:0001539	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001600	"A sequence variant that changes the resulting polypeptide structure." [SO:ke]	1904942	\N	\N	sequence	3	SO	functional_variant	complex_3D_structural_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001600	"A sequence variant that changes the resulting polypeptide structure." [SO:ke]	2929373	\N	\N	sequence	4	SO	sequence_variant	complex_3D_structural_variant
SO:0001601	\N	\N	"A sequence variant in the CDS region that causes a conformational change in the resulting polypeptide sequence." [SO:ke]	SO:0001601	"A sequence variant in the CDS region that causes a conformational change in the resulting polypeptide sequence." [SO:ke]	46470	\N	\N	sequence	0	SO	conformational_change_variant	conformational_change_variant
SO:0001599	SO:0001601	\N	"A sequence variant that changes the resulting polypeptide structure." [SO:ke]	SO:0001601	"A sequence variant in the CDS region that causes a conformational change in the resulting polypeptide sequence." [SO:ke]	491224	\N	\N	sequence	1	SO	3D_polypeptide_structure_variant	conformational_change_variant
SO:0001539	SO:0001599	\N	"A sequence variant that affects the functioning of a translational product with respect to a reference sequence." [SO:ke]	SO:0001601	"A sequence variant in the CDS region that causes a conformational change in the resulting polypeptide sequence." [SO:ke]	1073827	\N	\N	sequence	2	SO	translational_product_function_variant	conformational_change_variant
SO:0001536	SO:0001539	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001601	"A sequence variant in the CDS region that causes a conformational change in the resulting polypeptide sequence." [SO:ke]	1904943	\N	\N	sequence	3	SO	functional_variant	conformational_change_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001601	"A sequence variant in the CDS region that causes a conformational change in the resulting polypeptide sequence." [SO:ke]	2929374	\N	\N	sequence	4	SO	sequence_variant	conformational_change_variant
SO:0001602	\N	\N	"" []	SO:0001602	"" []	46471	\N	\N	sequence	0	SO	complex_change_of_translational_product_variant	complex_change_of_translational_product_variant
SO:0001539	SO:0001602	\N	"A sequence variant that affects the functioning of a translational product with respect to a reference sequence." [SO:ke]	SO:0001602	"" []	491225	\N	\N	sequence	1	SO	translational_product_function_variant	complex_change_of_translational_product_variant
SO:0001536	SO:0001539	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001602	"" []	1073828	\N	\N	sequence	2	SO	functional_variant	complex_change_of_translational_product_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001602	"" []	1904944	\N	\N	sequence	3	SO	sequence_variant	complex_change_of_translational_product_variant
SO:0001603	\N	\N	"A sequence variant with in the CDS that causes a change in the resulting polypeptide sequence." [SO:ke]	SO:0001603	"A sequence variant with in the CDS that causes a change in the resulting polypeptide sequence." [SO:ke]	46472	\N	\N	sequence	0	SO	polypeptide_sequence_variant	polypeptide_sequence_variant
SO:0001598	SO:0001603	\N	"A sequence variant within the transcript that changes the structure of the translational product." [SO:ke]	SO:0001603	"A sequence variant with in the CDS that causes a change in the resulting polypeptide sequence." [SO:ke]	491226	\N	\N	sequence	1	SO	translational_product_structure_variant	polypeptide_sequence_variant
SO:0001564	SO:0001598	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001603	"A sequence variant with in the CDS that causes a change in the resulting polypeptide sequence." [SO:ke]	1073829	\N	\N	sequence	2	SO	gene_variant	polypeptide_sequence_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001603	"A sequence variant with in the CDS that causes a change in the resulting polypeptide sequence." [SO:ke]	1904945	\N	\N	sequence	3	SO	feature_variant	polypeptide_sequence_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001603	"A sequence variant with in the CDS that causes a change in the resulting polypeptide sequence." [SO:ke]	2929375	\N	\N	sequence	4	SO	structural_variant	polypeptide_sequence_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001603	"A sequence variant with in the CDS that causes a change in the resulting polypeptide sequence." [SO:ke]	4002481	\N	\N	sequence	5	SO	sequence_variant	polypeptide_sequence_variant
SO:0001604	\N	\N	"A sequence variant within a CDS resulting in the loss of an amino acid from the resulting polypeptide." [SO:ke]	SO:0001604	"A sequence variant within a CDS resulting in the loss of an amino acid from the resulting polypeptide." [SO:ke]	46473	\N	\N	sequence	0	SO	amino_acid_deletion	amino_acid_deletion
SO:0001603	SO:0001604	\N	"A sequence variant with in the CDS that causes a change in the resulting polypeptide sequence." [SO:ke]	SO:0001604	"A sequence variant within a CDS resulting in the loss of an amino acid from the resulting polypeptide." [SO:ke]	491227	\N	\N	sequence	1	SO	polypeptide_sequence_variant	amino_acid_deletion
SO:0001598	SO:0001603	\N	"A sequence variant within the transcript that changes the structure of the translational product." [SO:ke]	SO:0001604	"A sequence variant within a CDS resulting in the loss of an amino acid from the resulting polypeptide." [SO:ke]	1073830	\N	\N	sequence	2	SO	translational_product_structure_variant	amino_acid_deletion
SO:0001564	SO:0001598	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001604	"A sequence variant within a CDS resulting in the loss of an amino acid from the resulting polypeptide." [SO:ke]	1904946	\N	\N	sequence	3	SO	gene_variant	amino_acid_deletion
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001604	"A sequence variant within a CDS resulting in the loss of an amino acid from the resulting polypeptide." [SO:ke]	2929376	\N	\N	sequence	4	SO	feature_variant	amino_acid_deletion
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001604	"A sequence variant within a CDS resulting in the loss of an amino acid from the resulting polypeptide." [SO:ke]	4002482	\N	\N	sequence	5	SO	structural_variant	amino_acid_deletion
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001604	"A sequence variant within a CDS resulting in the loss of an amino acid from the resulting polypeptide." [SO:ke]	4966759	\N	\N	sequence	6	SO	sequence_variant	amino_acid_deletion
SO:0001605	\N	\N	"A sequence variant within a CDS resulting in the gain of an amino acid to the resulting polypeptide." [SO:ke]	SO:0001605	"A sequence variant within a CDS resulting in the gain of an amino acid to the resulting polypeptide." [SO:ke]	46474	\N	\N	sequence	0	SO	amino_acid_insertion	amino_acid_insertion
SO:0001603	SO:0001605	\N	"A sequence variant with in the CDS that causes a change in the resulting polypeptide sequence." [SO:ke]	SO:0001605	"A sequence variant within a CDS resulting in the gain of an amino acid to the resulting polypeptide." [SO:ke]	491228	\N	\N	sequence	1	SO	polypeptide_sequence_variant	amino_acid_insertion
SO:0001598	SO:0001603	\N	"A sequence variant within the transcript that changes the structure of the translational product." [SO:ke]	SO:0001605	"A sequence variant within a CDS resulting in the gain of an amino acid to the resulting polypeptide." [SO:ke]	1073831	\N	\N	sequence	2	SO	translational_product_structure_variant	amino_acid_insertion
SO:0001564	SO:0001598	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001605	"A sequence variant within a CDS resulting in the gain of an amino acid to the resulting polypeptide." [SO:ke]	1904947	\N	\N	sequence	3	SO	gene_variant	amino_acid_insertion
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001605	"A sequence variant within a CDS resulting in the gain of an amino acid to the resulting polypeptide." [SO:ke]	2929377	\N	\N	sequence	4	SO	feature_variant	amino_acid_insertion
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001605	"A sequence variant within a CDS resulting in the gain of an amino acid to the resulting polypeptide." [SO:ke]	4002483	\N	\N	sequence	5	SO	structural_variant	amino_acid_insertion
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001605	"A sequence variant within a CDS resulting in the gain of an amino acid to the resulting polypeptide." [SO:ke]	4966760	\N	\N	sequence	6	SO	sequence_variant	amino_acid_insertion
SO:0001606	\N	\N	"A sequence variant of a codon resulting in the substitution of one amino acid for another in the resulting polypeptide." [SO:ke]	SO:0001606	"A sequence variant of a codon resulting in the substitution of one amino acid for another in the resulting polypeptide." [SO:ke]	46475	\N	\N	sequence	0	SO	amino_acid_substitution	amino_acid_substitution
SO:0001603	SO:0001606	\N	"A sequence variant with in the CDS that causes a change in the resulting polypeptide sequence." [SO:ke]	SO:0001606	"A sequence variant of a codon resulting in the substitution of one amino acid for another in the resulting polypeptide." [SO:ke]	491229	\N	\N	sequence	1	SO	polypeptide_sequence_variant	amino_acid_substitution
SO:0001598	SO:0001603	\N	"A sequence variant within the transcript that changes the structure of the translational product." [SO:ke]	SO:0001606	"A sequence variant of a codon resulting in the substitution of one amino acid for another in the resulting polypeptide." [SO:ke]	1073832	\N	\N	sequence	2	SO	translational_product_structure_variant	amino_acid_substitution
SO:0001564	SO:0001598	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001606	"A sequence variant of a codon resulting in the substitution of one amino acid for another in the resulting polypeptide." [SO:ke]	1904948	\N	\N	sequence	3	SO	gene_variant	amino_acid_substitution
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001606	"A sequence variant of a codon resulting in the substitution of one amino acid for another in the resulting polypeptide." [SO:ke]	2929378	\N	\N	sequence	4	SO	feature_variant	amino_acid_substitution
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001606	"A sequence variant of a codon resulting in the substitution of one amino acid for another in the resulting polypeptide." [SO:ke]	4002484	\N	\N	sequence	5	SO	structural_variant	amino_acid_substitution
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001606	"A sequence variant of a codon resulting in the substitution of one amino acid for another in the resulting polypeptide." [SO:ke]	4966761	\N	\N	sequence	6	SO	sequence_variant	amino_acid_substitution
SO:0001607	\N	\N	"A sequence variant of a codon causing the substitution of a similar amino acid for another in the resulting polypeptide." [SO:ke]	SO:0001607	"A sequence variant of a codon causing the substitution of a similar amino acid for another in the resulting polypeptide." [SO:ke]	46476	\N	\N	sequence	0	SO	conservative_amino_acid_substitution	conservative_amino_acid_substitution
SO:0001606	SO:0001607	\N	"A sequence variant of a codon resulting in the substitution of one amino acid for another in the resulting polypeptide." [SO:ke]	SO:0001607	"A sequence variant of a codon causing the substitution of a similar amino acid for another in the resulting polypeptide." [SO:ke]	491230	\N	\N	sequence	1	SO	amino_acid_substitution	conservative_amino_acid_substitution
SO:0001603	SO:0001606	\N	"A sequence variant with in the CDS that causes a change in the resulting polypeptide sequence." [SO:ke]	SO:0001607	"A sequence variant of a codon causing the substitution of a similar amino acid for another in the resulting polypeptide." [SO:ke]	1073833	\N	\N	sequence	2	SO	polypeptide_sequence_variant	conservative_amino_acid_substitution
SO:0001598	SO:0001603	\N	"A sequence variant within the transcript that changes the structure of the translational product." [SO:ke]	SO:0001607	"A sequence variant of a codon causing the substitution of a similar amino acid for another in the resulting polypeptide." [SO:ke]	1904949	\N	\N	sequence	3	SO	translational_product_structure_variant	conservative_amino_acid_substitution
SO:0001564	SO:0001598	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001607	"A sequence variant of a codon causing the substitution of a similar amino acid for another in the resulting polypeptide." [SO:ke]	2929379	\N	\N	sequence	4	SO	gene_variant	conservative_amino_acid_substitution
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001607	"A sequence variant of a codon causing the substitution of a similar amino acid for another in the resulting polypeptide." [SO:ke]	4002485	\N	\N	sequence	5	SO	feature_variant	conservative_amino_acid_substitution
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001607	"A sequence variant of a codon causing the substitution of a similar amino acid for another in the resulting polypeptide." [SO:ke]	4966762	\N	\N	sequence	6	SO	structural_variant	conservative_amino_acid_substitution
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001607	"A sequence variant of a codon causing the substitution of a similar amino acid for another in the resulting polypeptide." [SO:ke]	5741365	\N	\N	sequence	7	SO	sequence_variant	conservative_amino_acid_substitution
SO:0001608	\N	\N	"A sequence variant of a codon causing the substitution of a non conservative amino acid for another in the resulting polypeptide." [SO:ke]	SO:0001608	"A sequence variant of a codon causing the substitution of a non conservative amino acid for another in the resulting polypeptide." [SO:ke]	46477	\N	\N	sequence	0	SO	non_conservative_amino_acid_substitution	non_conservative_amino_acid_substitution
SO:0001606	SO:0001608	\N	"A sequence variant of a codon resulting in the substitution of one amino acid for another in the resulting polypeptide." [SO:ke]	SO:0001608	"A sequence variant of a codon causing the substitution of a non conservative amino acid for another in the resulting polypeptide." [SO:ke]	491231	\N	\N	sequence	1	SO	amino_acid_substitution	non_conservative_amino_acid_substitution
SO:0001603	SO:0001606	\N	"A sequence variant with in the CDS that causes a change in the resulting polypeptide sequence." [SO:ke]	SO:0001608	"A sequence variant of a codon causing the substitution of a non conservative amino acid for another in the resulting polypeptide." [SO:ke]	1073834	\N	\N	sequence	2	SO	polypeptide_sequence_variant	non_conservative_amino_acid_substitution
SO:0001598	SO:0001603	\N	"A sequence variant within the transcript that changes the structure of the translational product." [SO:ke]	SO:0001608	"A sequence variant of a codon causing the substitution of a non conservative amino acid for another in the resulting polypeptide." [SO:ke]	1904950	\N	\N	sequence	3	SO	translational_product_structure_variant	non_conservative_amino_acid_substitution
SO:0001564	SO:0001598	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001608	"A sequence variant of a codon causing the substitution of a non conservative amino acid for another in the resulting polypeptide." [SO:ke]	2929380	\N	\N	sequence	4	SO	gene_variant	non_conservative_amino_acid_substitution
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001608	"A sequence variant of a codon causing the substitution of a non conservative amino acid for another in the resulting polypeptide." [SO:ke]	4002486	\N	\N	sequence	5	SO	feature_variant	non_conservative_amino_acid_substitution
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001608	"A sequence variant of a codon causing the substitution of a non conservative amino acid for another in the resulting polypeptide." [SO:ke]	4966763	\N	\N	sequence	6	SO	structural_variant	non_conservative_amino_acid_substitution
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001608	"A sequence variant of a codon causing the substitution of a non conservative amino acid for another in the resulting polypeptide." [SO:ke]	5741366	\N	\N	sequence	7	SO	sequence_variant	non_conservative_amino_acid_substitution
SO:0001609	\N	\N	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence." [SO:ke]	SO:0001609	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence." [SO:ke]	46478	\N	\N	sequence	0	SO	elongated_polypeptide	elongated_polypeptide
SO:0001603	SO:0001609	\N	"A sequence variant with in the CDS that causes a change in the resulting polypeptide sequence." [SO:ke]	SO:0001609	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence." [SO:ke]	491232	\N	\N	sequence	1	SO	polypeptide_sequence_variant	elongated_polypeptide
SO:0001598	SO:0001603	\N	"A sequence variant within the transcript that changes the structure of the translational product." [SO:ke]	SO:0001609	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence." [SO:ke]	1073835	\N	\N	sequence	2	SO	translational_product_structure_variant	elongated_polypeptide
SO:0001564	SO:0001598	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001609	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence." [SO:ke]	1904951	\N	\N	sequence	3	SO	gene_variant	elongated_polypeptide
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001609	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence." [SO:ke]	2929381	\N	\N	sequence	4	SO	feature_variant	elongated_polypeptide
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001609	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence." [SO:ke]	4002487	\N	\N	sequence	5	SO	structural_variant	elongated_polypeptide
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001609	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence." [SO:ke]	4966764	\N	\N	sequence	6	SO	sequence_variant	elongated_polypeptide
SO:0001610	\N	\N	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence at the C terminus." [SO:ke]	SO:0001610	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence at the C terminus." [SO:ke]	46479	\N	\N	sequence	0	SO	elongated_polypeptide_C_terminal	elongated_polypeptide_C_terminal
SO:0001609	SO:0001610	\N	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence." [SO:ke]	SO:0001610	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence at the C terminus." [SO:ke]	491233	\N	\N	sequence	1	SO	elongated_polypeptide	elongated_polypeptide_C_terminal
SO:0001603	SO:0001609	\N	"A sequence variant with in the CDS that causes a change in the resulting polypeptide sequence." [SO:ke]	SO:0001610	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence at the C terminus." [SO:ke]	1073836	\N	\N	sequence	2	SO	polypeptide_sequence_variant	elongated_polypeptide_C_terminal
SO:0001598	SO:0001603	\N	"A sequence variant within the transcript that changes the structure of the translational product." [SO:ke]	SO:0001610	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence at the C terminus." [SO:ke]	1904952	\N	\N	sequence	3	SO	translational_product_structure_variant	elongated_polypeptide_C_terminal
SO:0001564	SO:0001598	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001610	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence at the C terminus." [SO:ke]	2929382	\N	\N	sequence	4	SO	gene_variant	elongated_polypeptide_C_terminal
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001610	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence at the C terminus." [SO:ke]	4002488	\N	\N	sequence	5	SO	feature_variant	elongated_polypeptide_C_terminal
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001610	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence at the C terminus." [SO:ke]	4966765	\N	\N	sequence	6	SO	structural_variant	elongated_polypeptide_C_terminal
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001610	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence at the C terminus." [SO:ke]	5741367	\N	\N	sequence	7	SO	sequence_variant	elongated_polypeptide_C_terminal
SO:0001611	\N	\N	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence at the N terminus." [SO:ke]	SO:0001611	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence at the N terminus." [SO:ke]	46480	\N	\N	sequence	0	SO	elongated_polypeptide_N_terminal	elongated_polypeptide_N_terminal
SO:0001609	SO:0001611	\N	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence." [SO:ke]	SO:0001611	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence at the N terminus." [SO:ke]	491234	\N	\N	sequence	1	SO	elongated_polypeptide	elongated_polypeptide_N_terminal
SO:0001603	SO:0001609	\N	"A sequence variant with in the CDS that causes a change in the resulting polypeptide sequence." [SO:ke]	SO:0001611	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence at the N terminus." [SO:ke]	1073837	\N	\N	sequence	2	SO	polypeptide_sequence_variant	elongated_polypeptide_N_terminal
SO:0001598	SO:0001603	\N	"A sequence variant within the transcript that changes the structure of the translational product." [SO:ke]	SO:0001611	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence at the N terminus." [SO:ke]	1904953	\N	\N	sequence	3	SO	translational_product_structure_variant	elongated_polypeptide_N_terminal
SO:0001564	SO:0001598	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001611	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence at the N terminus." [SO:ke]	2929383	\N	\N	sequence	4	SO	gene_variant	elongated_polypeptide_N_terminal
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001611	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence at the N terminus." [SO:ke]	4002489	\N	\N	sequence	5	SO	feature_variant	elongated_polypeptide_N_terminal
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001611	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence at the N terminus." [SO:ke]	4966766	\N	\N	sequence	6	SO	structural_variant	elongated_polypeptide_N_terminal
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001611	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence at the N terminus." [SO:ke]	5741368	\N	\N	sequence	7	SO	sequence_variant	elongated_polypeptide_N_terminal
SO:0001612	\N	\N	"A sequence variant with in the CDS that causes in frame elongation of the resulting polypeptide sequence at the C terminus." [SO:ke]	SO:0001612	"A sequence variant with in the CDS that causes in frame elongation of the resulting polypeptide sequence at the C terminus." [SO:ke]	46481	\N	\N	sequence	0	SO	elongated_in_frame_polypeptide_C_terminal	elongated_in_frame_polypeptide_C_terminal
SO:0001610	SO:0001612	\N	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence at the C terminus." [SO:ke]	SO:0001612	"A sequence variant with in the CDS that causes in frame elongation of the resulting polypeptide sequence at the C terminus." [SO:ke]	491235	\N	\N	sequence	1	SO	elongated_polypeptide_C_terminal	elongated_in_frame_polypeptide_C_terminal
SO:0001609	SO:0001610	\N	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence." [SO:ke]	SO:0001612	"A sequence variant with in the CDS that causes in frame elongation of the resulting polypeptide sequence at the C terminus." [SO:ke]	1073838	\N	\N	sequence	2	SO	elongated_polypeptide	elongated_in_frame_polypeptide_C_terminal
SO:0001603	SO:0001609	\N	"A sequence variant with in the CDS that causes a change in the resulting polypeptide sequence." [SO:ke]	SO:0001612	"A sequence variant with in the CDS that causes in frame elongation of the resulting polypeptide sequence at the C terminus." [SO:ke]	1904954	\N	\N	sequence	3	SO	polypeptide_sequence_variant	elongated_in_frame_polypeptide_C_terminal
SO:0001598	SO:0001603	\N	"A sequence variant within the transcript that changes the structure of the translational product." [SO:ke]	SO:0001612	"A sequence variant with in the CDS that causes in frame elongation of the resulting polypeptide sequence at the C terminus." [SO:ke]	2929384	\N	\N	sequence	4	SO	translational_product_structure_variant	elongated_in_frame_polypeptide_C_terminal
SO:0001564	SO:0001598	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001612	"A sequence variant with in the CDS that causes in frame elongation of the resulting polypeptide sequence at the C terminus." [SO:ke]	4002490	\N	\N	sequence	5	SO	gene_variant	elongated_in_frame_polypeptide_C_terminal
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001612	"A sequence variant with in the CDS that causes in frame elongation of the resulting polypeptide sequence at the C terminus." [SO:ke]	4966767	\N	\N	sequence	6	SO	feature_variant	elongated_in_frame_polypeptide_C_terminal
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001612	"A sequence variant with in the CDS that causes in frame elongation of the resulting polypeptide sequence at the C terminus." [SO:ke]	5741369	\N	\N	sequence	7	SO	structural_variant	elongated_in_frame_polypeptide_C_terminal
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001612	"A sequence variant with in the CDS that causes in frame elongation of the resulting polypeptide sequence at the C terminus." [SO:ke]	6311131	\N	\N	sequence	8	SO	sequence_variant	elongated_in_frame_polypeptide_C_terminal
SO:0001613	\N	\N	"A sequence variant with in the CDS that causes out of frame elongation of the resulting polypeptide sequence at the C terminus." [SO:ke]	SO:0001613	"A sequence variant with in the CDS that causes out of frame elongation of the resulting polypeptide sequence at the C terminus." [SO:ke]	46482	\N	\N	sequence	0	SO	elongated_out_of_frame_polypeptide_C_terminal	elongated_out_of_frame_polypeptide_C_terminal
SO:0001610	SO:0001613	\N	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence at the C terminus." [SO:ke]	SO:0001613	"A sequence variant with in the CDS that causes out of frame elongation of the resulting polypeptide sequence at the C terminus." [SO:ke]	491236	\N	\N	sequence	1	SO	elongated_polypeptide_C_terminal	elongated_out_of_frame_polypeptide_C_terminal
SO:0001609	SO:0001610	\N	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence." [SO:ke]	SO:0001613	"A sequence variant with in the CDS that causes out of frame elongation of the resulting polypeptide sequence at the C terminus." [SO:ke]	1073839	\N	\N	sequence	2	SO	elongated_polypeptide	elongated_out_of_frame_polypeptide_C_terminal
SO:0001603	SO:0001609	\N	"A sequence variant with in the CDS that causes a change in the resulting polypeptide sequence." [SO:ke]	SO:0001613	"A sequence variant with in the CDS that causes out of frame elongation of the resulting polypeptide sequence at the C terminus." [SO:ke]	1904955	\N	\N	sequence	3	SO	polypeptide_sequence_variant	elongated_out_of_frame_polypeptide_C_terminal
SO:0001598	SO:0001603	\N	"A sequence variant within the transcript that changes the structure of the translational product." [SO:ke]	SO:0001613	"A sequence variant with in the CDS that causes out of frame elongation of the resulting polypeptide sequence at the C terminus." [SO:ke]	2929385	\N	\N	sequence	4	SO	translational_product_structure_variant	elongated_out_of_frame_polypeptide_C_terminal
SO:0001564	SO:0001598	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001613	"A sequence variant with in the CDS that causes out of frame elongation of the resulting polypeptide sequence at the C terminus." [SO:ke]	4002491	\N	\N	sequence	5	SO	gene_variant	elongated_out_of_frame_polypeptide_C_terminal
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001613	"A sequence variant with in the CDS that causes out of frame elongation of the resulting polypeptide sequence at the C terminus." [SO:ke]	4966768	\N	\N	sequence	6	SO	feature_variant	elongated_out_of_frame_polypeptide_C_terminal
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001613	"A sequence variant with in the CDS that causes out of frame elongation of the resulting polypeptide sequence at the C terminus." [SO:ke]	5741370	\N	\N	sequence	7	SO	structural_variant	elongated_out_of_frame_polypeptide_C_terminal
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001613	"A sequence variant with in the CDS that causes out of frame elongation of the resulting polypeptide sequence at the C terminus." [SO:ke]	6311132	\N	\N	sequence	8	SO	sequence_variant	elongated_out_of_frame_polypeptide_C_terminal
SO:0001614	\N	\N	"A sequence variant with in the CDS that causes in frame elongation of the resulting polypeptide sequence at the N terminus." [SO:ke]	SO:0001614	"A sequence variant with in the CDS that causes in frame elongation of the resulting polypeptide sequence at the N terminus." [SO:ke]	46483	\N	\N	sequence	0	SO	elongated_in_frame_polypeptide_N_terminal_elongation	elongated_in_frame_polypeptide_N_terminal_elongation
SO:0001611	SO:0001614	\N	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence at the N terminus." [SO:ke]	SO:0001614	"A sequence variant with in the CDS that causes in frame elongation of the resulting polypeptide sequence at the N terminus." [SO:ke]	491237	\N	\N	sequence	1	SO	elongated_polypeptide_N_terminal	elongated_in_frame_polypeptide_N_terminal_elongation
SO:0001609	SO:0001611	\N	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence." [SO:ke]	SO:0001614	"A sequence variant with in the CDS that causes in frame elongation of the resulting polypeptide sequence at the N terminus." [SO:ke]	1073840	\N	\N	sequence	2	SO	elongated_polypeptide	elongated_in_frame_polypeptide_N_terminal_elongation
SO:0001603	SO:0001609	\N	"A sequence variant with in the CDS that causes a change in the resulting polypeptide sequence." [SO:ke]	SO:0001614	"A sequence variant with in the CDS that causes in frame elongation of the resulting polypeptide sequence at the N terminus." [SO:ke]	1904956	\N	\N	sequence	3	SO	polypeptide_sequence_variant	elongated_in_frame_polypeptide_N_terminal_elongation
SO:0001598	SO:0001603	\N	"A sequence variant within the transcript that changes the structure of the translational product." [SO:ke]	SO:0001614	"A sequence variant with in the CDS that causes in frame elongation of the resulting polypeptide sequence at the N terminus." [SO:ke]	2929386	\N	\N	sequence	4	SO	translational_product_structure_variant	elongated_in_frame_polypeptide_N_terminal_elongation
SO:0001564	SO:0001598	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001614	"A sequence variant with in the CDS that causes in frame elongation of the resulting polypeptide sequence at the N terminus." [SO:ke]	4002492	\N	\N	sequence	5	SO	gene_variant	elongated_in_frame_polypeptide_N_terminal_elongation
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001614	"A sequence variant with in the CDS that causes in frame elongation of the resulting polypeptide sequence at the N terminus." [SO:ke]	4966769	\N	\N	sequence	6	SO	feature_variant	elongated_in_frame_polypeptide_N_terminal_elongation
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001614	"A sequence variant with in the CDS that causes in frame elongation of the resulting polypeptide sequence at the N terminus." [SO:ke]	5741371	\N	\N	sequence	7	SO	structural_variant	elongated_in_frame_polypeptide_N_terminal_elongation
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001614	"A sequence variant with in the CDS that causes in frame elongation of the resulting polypeptide sequence at the N terminus." [SO:ke]	6311133	\N	\N	sequence	8	SO	sequence_variant	elongated_in_frame_polypeptide_N_terminal_elongation
SO:0001615	\N	\N	"A sequence variant with in the CDS that causes out of frame elongation of the resulting polypeptide sequence at the N terminus." [SO:ke]	SO:0001615	"A sequence variant with in the CDS that causes out of frame elongation of the resulting polypeptide sequence at the N terminus." [SO:ke]	46484	\N	\N	sequence	0	SO	elongated_out_of_frame_polypeptide_N_terminal	elongated_out_of_frame_polypeptide_N_terminal
SO:0001611	SO:0001615	\N	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence at the N terminus." [SO:ke]	SO:0001615	"A sequence variant with in the CDS that causes out of frame elongation of the resulting polypeptide sequence at the N terminus." [SO:ke]	491238	\N	\N	sequence	1	SO	elongated_polypeptide_N_terminal	elongated_out_of_frame_polypeptide_N_terminal
SO:0001609	SO:0001611	\N	"A sequence variant with in the CDS that causes elongation of the resulting polypeptide sequence." [SO:ke]	SO:0001615	"A sequence variant with in the CDS that causes out of frame elongation of the resulting polypeptide sequence at the N terminus." [SO:ke]	1073841	\N	\N	sequence	2	SO	elongated_polypeptide	elongated_out_of_frame_polypeptide_N_terminal
SO:0001603	SO:0001609	\N	"A sequence variant with in the CDS that causes a change in the resulting polypeptide sequence." [SO:ke]	SO:0001615	"A sequence variant with in the CDS that causes out of frame elongation of the resulting polypeptide sequence at the N terminus." [SO:ke]	1904957	\N	\N	sequence	3	SO	polypeptide_sequence_variant	elongated_out_of_frame_polypeptide_N_terminal
SO:0001598	SO:0001603	\N	"A sequence variant within the transcript that changes the structure of the translational product." [SO:ke]	SO:0001615	"A sequence variant with in the CDS that causes out of frame elongation of the resulting polypeptide sequence at the N terminus." [SO:ke]	2929387	\N	\N	sequence	4	SO	translational_product_structure_variant	elongated_out_of_frame_polypeptide_N_terminal
SO:0001564	SO:0001598	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001615	"A sequence variant with in the CDS that causes out of frame elongation of the resulting polypeptide sequence at the N terminus." [SO:ke]	4002493	\N	\N	sequence	5	SO	gene_variant	elongated_out_of_frame_polypeptide_N_terminal
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001615	"A sequence variant with in the CDS that causes out of frame elongation of the resulting polypeptide sequence at the N terminus." [SO:ke]	4966770	\N	\N	sequence	6	SO	feature_variant	elongated_out_of_frame_polypeptide_N_terminal
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001615	"A sequence variant with in the CDS that causes out of frame elongation of the resulting polypeptide sequence at the N terminus." [SO:ke]	5741372	\N	\N	sequence	7	SO	structural_variant	elongated_out_of_frame_polypeptide_N_terminal
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001615	"A sequence variant with in the CDS that causes out of frame elongation of the resulting polypeptide sequence at the N terminus." [SO:ke]	6311134	\N	\N	sequence	8	SO	sequence_variant	elongated_out_of_frame_polypeptide_N_terminal
SO:0001616	\N	\N	"A sequence variant that causes a fusion of two polypeptide sequences." [SO:ke]	SO:0001616	"A sequence variant that causes a fusion of two polypeptide sequences." [SO:ke]	46485	\N	\N	sequence	0	SO	polypeptide_fusion	polypeptide_fusion
SO:0001603	SO:0001616	\N	"A sequence variant with in the CDS that causes a change in the resulting polypeptide sequence." [SO:ke]	SO:0001616	"A sequence variant that causes a fusion of two polypeptide sequences." [SO:ke]	491239	\N	\N	sequence	1	SO	polypeptide_sequence_variant	polypeptide_fusion
SO:0001598	SO:0001603	\N	"A sequence variant within the transcript that changes the structure of the translational product." [SO:ke]	SO:0001616	"A sequence variant that causes a fusion of two polypeptide sequences." [SO:ke]	1073842	\N	\N	sequence	2	SO	translational_product_structure_variant	polypeptide_fusion
SO:0001564	SO:0001598	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001616	"A sequence variant that causes a fusion of two polypeptide sequences." [SO:ke]	1904958	\N	\N	sequence	3	SO	gene_variant	polypeptide_fusion
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001616	"A sequence variant that causes a fusion of two polypeptide sequences." [SO:ke]	2929388	\N	\N	sequence	4	SO	feature_variant	polypeptide_fusion
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001616	"A sequence variant that causes a fusion of two polypeptide sequences." [SO:ke]	4002494	\N	\N	sequence	5	SO	structural_variant	polypeptide_fusion
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001616	"A sequence variant that causes a fusion of two polypeptide sequences." [SO:ke]	4966771	\N	\N	sequence	6	SO	sequence_variant	polypeptide_fusion
SO:0001617	\N	\N	"A sequence variant of the CD that causes a truncation of the resulting polypeptide." [SO:ke]	SO:0001617	"A sequence variant of the CD that causes a truncation of the resulting polypeptide." [SO:ke]	46486	\N	\N	sequence	0	SO	polypeptide_truncation	polypeptide_truncation
SO:0001603	SO:0001617	\N	"A sequence variant with in the CDS that causes a change in the resulting polypeptide sequence." [SO:ke]	SO:0001617	"A sequence variant of the CD that causes a truncation of the resulting polypeptide." [SO:ke]	491240	\N	\N	sequence	1	SO	polypeptide_sequence_variant	polypeptide_truncation
SO:0001598	SO:0001603	\N	"A sequence variant within the transcript that changes the structure of the translational product." [SO:ke]	SO:0001617	"A sequence variant of the CD that causes a truncation of the resulting polypeptide." [SO:ke]	1073843	\N	\N	sequence	2	SO	translational_product_structure_variant	polypeptide_truncation
SO:0001564	SO:0001598	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001617	"A sequence variant of the CD that causes a truncation of the resulting polypeptide." [SO:ke]	1904959	\N	\N	sequence	3	SO	gene_variant	polypeptide_truncation
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001617	"A sequence variant of the CD that causes a truncation of the resulting polypeptide." [SO:ke]	2929389	\N	\N	sequence	4	SO	feature_variant	polypeptide_truncation
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001617	"A sequence variant of the CD that causes a truncation of the resulting polypeptide." [SO:ke]	4002495	\N	\N	sequence	5	SO	structural_variant	polypeptide_truncation
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001617	"A sequence variant of the CD that causes a truncation of the resulting polypeptide." [SO:ke]	4966772	\N	\N	sequence	6	SO	sequence_variant	polypeptide_truncation
SO:0001618	\N	\N	"A sequence variant that causes the inactivation of a catalytic site with respect to a reference sequence." [SO:ke]	SO:0001618	"A sequence variant that causes the inactivation of a catalytic site with respect to a reference sequence." [SO:ke]	46487	\N	\N	sequence	0	SO	inactive_catalytic_site	inactive_catalytic_site
SO:0001560	SO:0001618	\N	"A sequence variant that causes the inactivation of a ligand binding site with respect to a reference sequence." [SO:ke]	SO:0001618	"A sequence variant that causes the inactivation of a catalytic site with respect to a reference sequence." [SO:ke]	491241	\N	\N	sequence	1	SO	inactive_ligand_binding_site	inactive_catalytic_site
SO:0001559	SO:0001560	\N	"A sequence variant that causes the loss of a polypeptide function with respect to a reference sequence." [SO:ke]	SO:0001618	"A sequence variant that causes the inactivation of a catalytic site with respect to a reference sequence." [SO:ke]	1073844	\N	\N	sequence	2	SO	polypeptide_loss_of_function_variant	inactive_catalytic_site
SO:0001554	SO:0001559	\N	"A sequence variant which changes polypeptide functioning with respect to a reference sequence." [SO:ke]	SO:0001618	"A sequence variant that causes the inactivation of a catalytic site with respect to a reference sequence." [SO:ke]	1904960	\N	\N	sequence	3	SO	polypeptide_function_variant	inactive_catalytic_site
SO:0001539	SO:0001554	\N	"A sequence variant that affects the functioning of a translational product with respect to a reference sequence." [SO:ke]	SO:0001618	"A sequence variant that causes the inactivation of a catalytic site with respect to a reference sequence." [SO:ke]	2929390	\N	\N	sequence	4	SO	translational_product_function_variant	inactive_catalytic_site
SO:0001536	SO:0001539	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001618	"A sequence variant that causes the inactivation of a catalytic site with respect to a reference sequence." [SO:ke]	4002496	\N	\N	sequence	5	SO	functional_variant	inactive_catalytic_site
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001618	"A sequence variant that causes the inactivation of a catalytic site with respect to a reference sequence." [SO:ke]	4966773	\N	\N	sequence	6	SO	sequence_variant	inactive_catalytic_site
SO:0001619	\N	\N	"A transcript variant of a non coding RNA gene." [SO:ke]	SO:0001619	"A transcript variant of a non coding RNA gene." [SO:ke]	46488	\N	\N	sequence	0	SO	non_coding_transcript_variant	non_coding_transcript_variant
SO:0001576	SO:0001619	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001619	"A transcript variant of a non coding RNA gene." [SO:ke]	491242	\N	\N	sequence	1	SO	transcript_variant	non_coding_transcript_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001619	"A transcript variant of a non coding RNA gene." [SO:ke]	1073845	\N	\N	sequence	2	SO	gene_variant	non_coding_transcript_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001619	"A transcript variant of a non coding RNA gene." [SO:ke]	1904961	\N	\N	sequence	3	SO	feature_variant	non_coding_transcript_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001619	"A transcript variant of a non coding RNA gene." [SO:ke]	2929391	\N	\N	sequence	4	SO	structural_variant	non_coding_transcript_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001619	"A transcript variant of a non coding RNA gene." [SO:ke]	4002497	\N	\N	sequence	5	SO	sequence_variant	non_coding_transcript_variant
SO:0001620	\N	\N	"A transcript variant located with the sequence of the mature miRNA." [SO:ke]	SO:0001620	"A transcript variant located with the sequence of the mature miRNA." [SO:ke]	46489	\N	\N	sequence	0	SO	mature_miRNA_variant	mature_miRNA_variant
SO:0001619	SO:0001620	\N	"A transcript variant of a non coding RNA gene." [SO:ke]	SO:0001620	"A transcript variant located with the sequence of the mature miRNA." [SO:ke]	491243	\N	\N	sequence	1	SO	non_coding_transcript_variant	mature_miRNA_variant
SO:0001576	SO:0001619	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001620	"A transcript variant located with the sequence of the mature miRNA." [SO:ke]	1073846	\N	\N	sequence	2	SO	transcript_variant	mature_miRNA_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001620	"A transcript variant located with the sequence of the mature miRNA." [SO:ke]	1904962	\N	\N	sequence	3	SO	gene_variant	mature_miRNA_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001620	"A transcript variant located with the sequence of the mature miRNA." [SO:ke]	2929392	\N	\N	sequence	4	SO	feature_variant	mature_miRNA_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001620	"A transcript variant located with the sequence of the mature miRNA." [SO:ke]	4002498	\N	\N	sequence	5	SO	structural_variant	mature_miRNA_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001620	"A transcript variant located with the sequence of the mature miRNA." [SO:ke]	4966774	\N	\N	sequence	6	SO	sequence_variant	mature_miRNA_variant
SO:0001621	\N	\N	"A variant in a transcript that is the target of NMD." [SO:ke]	SO:0001621	"A variant in a transcript that is the target of NMD." [SO:ke]	46490	\N	\N	sequence	0	SO	NMD_transcript_variant	NMD_transcript_variant
SO:0001576	SO:0001621	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001621	"A variant in a transcript that is the target of NMD." [SO:ke]	491244	\N	\N	sequence	1	SO	transcript_variant	NMD_transcript_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001621	"A variant in a transcript that is the target of NMD." [SO:ke]	1073847	\N	\N	sequence	2	SO	gene_variant	NMD_transcript_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001621	"A variant in a transcript that is the target of NMD." [SO:ke]	1904963	\N	\N	sequence	3	SO	feature_variant	NMD_transcript_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001621	"A variant in a transcript that is the target of NMD." [SO:ke]	2929393	\N	\N	sequence	4	SO	structural_variant	NMD_transcript_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001621	"A variant in a transcript that is the target of NMD." [SO:ke]	4002499	\N	\N	sequence	5	SO	sequence_variant	NMD_transcript_variant
SO:0001622	\N	\N	"A transcript variant that is located within the UTR." [SO:ke]	SO:0001622	"A transcript variant that is located within the UTR." [SO:ke]	46491	\N	\N	sequence	0	SO	UTR_variant	UTR_variant
SO:0001791	SO:0001622	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001622	"A transcript variant that is located within the UTR." [SO:ke]	491245	\N	\N	sequence	1	SO	exon_variant	UTR_variant
SO:0001968	SO:0001622	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001622	"A transcript variant that is located within the UTR." [SO:ke]	491246	\N	\N	sequence	1	SO	coding_transcript_variant	UTR_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001622	"A transcript variant that is located within the UTR." [SO:ke]	1073848	\N	\N	sequence	2	SO	transcript_variant	UTR_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001622	"A transcript variant that is located within the UTR." [SO:ke]	1073849	\N	\N	sequence	2	SO	transcript_variant	UTR_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001622	"A transcript variant that is located within the UTR." [SO:ke]	1904964	\N	\N	sequence	3	SO	gene_variant	UTR_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001622	"A transcript variant that is located within the UTR." [SO:ke]	2929394	\N	\N	sequence	4	SO	feature_variant	UTR_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001622	"A transcript variant that is located within the UTR." [SO:ke]	4002500	\N	\N	sequence	5	SO	structural_variant	UTR_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001622	"A transcript variant that is located within the UTR." [SO:ke]	4966775	\N	\N	sequence	6	SO	sequence_variant	UTR_variant
SO:0001623	\N	\N	"A UTR variant of the 5' UTR." [SO:ke]	SO:0001623	"A UTR variant of the 5' UTR." [SO:ke]	46492	\N	\N	sequence	0	SO	5_prime_UTR_variant	5_prime_UTR_variant
SO:0001622	SO:0001623	\N	"A transcript variant that is located within the UTR." [SO:ke]	SO:0001623	"A UTR variant of the 5' UTR." [SO:ke]	491247	\N	\N	sequence	1	SO	UTR_variant	5_prime_UTR_variant
SO:0001791	SO:0001622	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001623	"A UTR variant of the 5' UTR." [SO:ke]	1073850	\N	\N	sequence	2	SO	exon_variant	5_prime_UTR_variant
SO:0001968	SO:0001622	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001623	"A UTR variant of the 5' UTR." [SO:ke]	1073851	\N	\N	sequence	2	SO	coding_transcript_variant	5_prime_UTR_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001623	"A UTR variant of the 5' UTR." [SO:ke]	1904965	\N	\N	sequence	3	SO	transcript_variant	5_prime_UTR_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001623	"A UTR variant of the 5' UTR." [SO:ke]	1904966	\N	\N	sequence	3	SO	transcript_variant	5_prime_UTR_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001623	"A UTR variant of the 5' UTR." [SO:ke]	2929395	\N	\N	sequence	4	SO	gene_variant	5_prime_UTR_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001623	"A UTR variant of the 5' UTR." [SO:ke]	4002501	\N	\N	sequence	5	SO	feature_variant	5_prime_UTR_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001623	"A UTR variant of the 5' UTR." [SO:ke]	4966776	\N	\N	sequence	6	SO	structural_variant	5_prime_UTR_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001623	"A UTR variant of the 5' UTR." [SO:ke]	5741373	\N	\N	sequence	7	SO	sequence_variant	5_prime_UTR_variant
SO:0001624	\N	\N	"A UTR variant of the 3' UTR." [SO:ke]	SO:0001624	"A UTR variant of the 3' UTR." [SO:ke]	46493	\N	\N	sequence	0	SO	3_prime_UTR_variant	3_prime_UTR_variant
SO:0001622	SO:0001624	\N	"A transcript variant that is located within the UTR." [SO:ke]	SO:0001624	"A UTR variant of the 3' UTR." [SO:ke]	491248	\N	\N	sequence	1	SO	UTR_variant	3_prime_UTR_variant
SO:0001791	SO:0001622	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001624	"A UTR variant of the 3' UTR." [SO:ke]	1073852	\N	\N	sequence	2	SO	exon_variant	3_prime_UTR_variant
SO:0001968	SO:0001622	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001624	"A UTR variant of the 3' UTR." [SO:ke]	1073853	\N	\N	sequence	2	SO	coding_transcript_variant	3_prime_UTR_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001624	"A UTR variant of the 3' UTR." [SO:ke]	1904967	\N	\N	sequence	3	SO	transcript_variant	3_prime_UTR_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001624	"A UTR variant of the 3' UTR." [SO:ke]	1904968	\N	\N	sequence	3	SO	transcript_variant	3_prime_UTR_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001624	"A UTR variant of the 3' UTR." [SO:ke]	2929396	\N	\N	sequence	4	SO	gene_variant	3_prime_UTR_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001624	"A UTR variant of the 3' UTR." [SO:ke]	4002502	\N	\N	sequence	5	SO	feature_variant	3_prime_UTR_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001624	"A UTR variant of the 3' UTR." [SO:ke]	4966777	\N	\N	sequence	6	SO	structural_variant	3_prime_UTR_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001624	"A UTR variant of the 3' UTR." [SO:ke]	5741374	\N	\N	sequence	7	SO	sequence_variant	3_prime_UTR_variant
SO:0001626	\N	\N	"A sequence variant where at least one base of the final codon of an incompletely annotated transcript is changed." [SO:ke]	SO:0001626	"A sequence variant where at least one base of the final codon of an incompletely annotated transcript is changed." [SO:ke]	46494	\N	\N	sequence	0	SO	incomplete_terminal_codon_variant	incomplete_terminal_codon_variant
SO:0001590	SO:0001626	\N	"A sequence variant whereby at least one of the bases in the terminator codon is changed." [SO:ke]	SO:0001626	"A sequence variant where at least one base of the final codon of an incompletely annotated transcript is changed." [SO:ke]	491249	\N	\N	sequence	1	SO	terminator_codon_variant	incomplete_terminal_codon_variant
SO:0001650	SO:0001626	\N	"A sequence variant which does not cause a disruption of the translational reading frame." [SO:ke]	SO:0001626	"A sequence variant where at least one base of the final codon of an incompletely annotated transcript is changed." [SO:ke]	491250	\N	\N	sequence	1	SO	inframe_variant	incomplete_terminal_codon_variant
SO:0001580	SO:0001590	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001626	"A sequence variant where at least one base of the final codon of an incompletely annotated transcript is changed." [SO:ke]	1073854	\N	\N	sequence	2	SO	coding_sequence_variant	incomplete_terminal_codon_variant
SO:0001818	SO:0001650	\N	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	SO:0001626	"A sequence variant where at least one base of the final codon of an incompletely annotated transcript is changed." [SO:ke]	1073855	\N	\N	sequence	2	SO	protein_altering_variant	incomplete_terminal_codon_variant
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001626	"A sequence variant where at least one base of the final codon of an incompletely annotated transcript is changed." [SO:ke]	2929399	\N	\N	sequence	4	SO	exon_variant	incomplete_terminal_codon_variant
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001626	"A sequence variant where at least one base of the final codon of an incompletely annotated transcript is changed." [SO:ke]	2929400	\N	\N	sequence	4	SO	coding_transcript_variant	incomplete_terminal_codon_variant
SO:0001580	SO:0001818	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001626	"A sequence variant where at least one base of the final codon of an incompletely annotated transcript is changed." [SO:ke]	1904971	\N	\N	sequence	3	SO	coding_sequence_variant	incomplete_terminal_codon_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001626	"A sequence variant where at least one base of the final codon of an incompletely annotated transcript is changed." [SO:ke]	3174001	\N	\N	sequence	5	SO	transcript_variant	incomplete_terminal_codon_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001626	"A sequence variant where at least one base of the final codon of an incompletely annotated transcript is changed." [SO:ke]	3174002	\N	\N	sequence	5	SO	transcript_variant	incomplete_terminal_codon_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001626	"A sequence variant where at least one base of the final codon of an incompletely annotated transcript is changed." [SO:ke]	4385853	\N	\N	sequence	6	SO	gene_variant	incomplete_terminal_codon_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001626	"A sequence variant where at least one base of the final codon of an incompletely annotated transcript is changed." [SO:ke]	5407481	\N	\N	sequence	7	SO	feature_variant	incomplete_terminal_codon_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001626	"A sequence variant where at least one base of the final codon of an incompletely annotated transcript is changed." [SO:ke]	6146677	\N	\N	sequence	8	SO	structural_variant	incomplete_terminal_codon_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001626	"A sequence variant where at least one base of the final codon of an incompletely annotated transcript is changed." [SO:ke]	6631417	\N	\N	sequence	9	SO	sequence_variant	incomplete_terminal_codon_variant
SO:0001627	\N	\N	"A transcript variant occurring within an intron." [SO:ke]	SO:0001627	"A transcript variant occurring within an intron." [SO:ke]	46495	\N	\N	sequence	0	SO	intron_variant	intron_variant
SO:0001576	SO:0001627	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001627	"A transcript variant occurring within an intron." [SO:ke]	491251	\N	\N	sequence	1	SO	transcript_variant	intron_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001627	"A transcript variant occurring within an intron." [SO:ke]	1073856	\N	\N	sequence	2	SO	gene_variant	intron_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001627	"A transcript variant occurring within an intron." [SO:ke]	1904972	\N	\N	sequence	3	SO	feature_variant	intron_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001627	"A transcript variant occurring within an intron." [SO:ke]	2929401	\N	\N	sequence	4	SO	structural_variant	intron_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001627	"A transcript variant occurring within an intron." [SO:ke]	4002504	\N	\N	sequence	5	SO	sequence_variant	intron_variant
SO:0001628	\N	\N	"A sequence variant located in the intergenic region, between genes." [SO:ke]	SO:0001628	"A sequence variant located in the intergenic region, between genes." [SO:ke]	46496	\N	\N	sequence	0	SO	intergenic_variant	intergenic_variant
SO:0001878	SO:0001628	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001628	"A sequence variant located in the intergenic region, between genes." [SO:ke]	491252	\N	\N	sequence	1	SO	feature_variant	intergenic_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001628	"A sequence variant located in the intergenic region, between genes." [SO:ke]	1073857	\N	\N	sequence	2	SO	structural_variant	intergenic_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001628	"A sequence variant located in the intergenic region, between genes." [SO:ke]	1904973	\N	\N	sequence	3	SO	sequence_variant	intergenic_variant
SO:0001629	\N	\N	"A sequence variant that changes the first two or last two bases of an intron, or the 5th base from the start of the intron in the orientation of the transcript." [http://ensembl.org/info/docs/variation/index.html]	SO:0001629	"A sequence variant that changes the first two or last two bases of an intron, or the 5th base from the start of the intron in the orientation of the transcript." [http://ensembl.org/info/docs/variation/index.html]	46497	\N	\N	sequence	0	SO	splice_site_variant	splice_site_variant
SO:0001568	SO:0001629	\N	"A sequence variant that changes the process of splicing." [SO:ke]	SO:0001629	"A sequence variant that changes the first two or last two bases of an intron, or the 5th base from the start of the intron in the orientation of the transcript." [http://ensembl.org/info/docs/variation/index.html]	491253	\N	\N	sequence	1	SO	splicing_variant	splice_site_variant
SO:0001627	SO:0001629	\N	"A transcript variant occurring within an intron." [SO:ke]	SO:0001629	"A sequence variant that changes the first two or last two bases of an intron, or the 5th base from the start of the intron in the orientation of the transcript." [http://ensembl.org/info/docs/variation/index.html]	491254	\N	\N	sequence	1	SO	intron_variant	splice_site_variant
SO:0001576	SO:0001568	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001629	"A sequence variant that changes the first two or last two bases of an intron, or the 5th base from the start of the intron in the orientation of the transcript." [http://ensembl.org/info/docs/variation/index.html]	1073858	\N	\N	sequence	2	SO	transcript_variant	splice_site_variant
SO:0001576	SO:0001627	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001629	"A sequence variant that changes the first two or last two bases of an intron, or the 5th base from the start of the intron in the orientation of the transcript." [http://ensembl.org/info/docs/variation/index.html]	1073859	\N	\N	sequence	2	SO	transcript_variant	splice_site_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001629	"A sequence variant that changes the first two or last two bases of an intron, or the 5th base from the start of the intron in the orientation of the transcript." [http://ensembl.org/info/docs/variation/index.html]	1904974	\N	\N	sequence	3	SO	gene_variant	splice_site_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001629	"A sequence variant that changes the first two or last two bases of an intron, or the 5th base from the start of the intron in the orientation of the transcript." [http://ensembl.org/info/docs/variation/index.html]	2929402	\N	\N	sequence	4	SO	feature_variant	splice_site_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001629	"A sequence variant that changes the first two or last two bases of an intron, or the 5th base from the start of the intron in the orientation of the transcript." [http://ensembl.org/info/docs/variation/index.html]	4002505	\N	\N	sequence	5	SO	structural_variant	splice_site_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001629	"A sequence variant that changes the first two or last two bases of an intron, or the 5th base from the start of the intron in the orientation of the transcript." [http://ensembl.org/info/docs/variation/index.html]	4966779	\N	\N	sequence	6	SO	sequence_variant	splice_site_variant
SO:0001630	\N	\N	"A sequence variant in which a change has occurred within the region of the splice site, either within 1-3 bases of the exon or 3-8 bases of the intron." [http://ensembl.org/info/docs/variation/index.html]	SO:0001630	"A sequence variant in which a change has occurred within the region of the splice site, either within 1-3 bases of the exon or 3-8 bases of the intron." [http://ensembl.org/info/docs/variation/index.html]	46498	\N	\N	sequence	0	SO	splice_region_variant	splice_region_variant
SO:0001568	SO:0001630	\N	"A sequence variant that changes the process of splicing." [SO:ke]	SO:0001630	"A sequence variant in which a change has occurred within the region of the splice site, either within 1-3 bases of the exon or 3-8 bases of the intron." [http://ensembl.org/info/docs/variation/index.html]	491255	\N	\N	sequence	1	SO	splicing_variant	splice_region_variant
SO:0001576	SO:0001568	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001630	"A sequence variant in which a change has occurred within the region of the splice site, either within 1-3 bases of the exon or 3-8 bases of the intron." [http://ensembl.org/info/docs/variation/index.html]	1073860	\N	\N	sequence	2	SO	transcript_variant	splice_region_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001630	"A sequence variant in which a change has occurred within the region of the splice site, either within 1-3 bases of the exon or 3-8 bases of the intron." [http://ensembl.org/info/docs/variation/index.html]	1904975	\N	\N	sequence	3	SO	gene_variant	splice_region_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001630	"A sequence variant in which a change has occurred within the region of the splice site, either within 1-3 bases of the exon or 3-8 bases of the intron." [http://ensembl.org/info/docs/variation/index.html]	2929403	\N	\N	sequence	4	SO	feature_variant	splice_region_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001630	"A sequence variant in which a change has occurred within the region of the splice site, either within 1-3 bases of the exon or 3-8 bases of the intron." [http://ensembl.org/info/docs/variation/index.html]	4002506	\N	\N	sequence	5	SO	structural_variant	splice_region_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001630	"A sequence variant in which a change has occurred within the region of the splice site, either within 1-3 bases of the exon or 3-8 bases of the intron." [http://ensembl.org/info/docs/variation/index.html]	4966780	\N	\N	sequence	6	SO	sequence_variant	splice_region_variant
SO:0001631	\N	\N	"A sequence variant located 5' of a gene." [SO:ke]	SO:0001631	"A sequence variant located 5' of a gene." [SO:ke]	46499	\N	\N	sequence	0	SO	upstream_gene_variant	upstream_gene_variant
SO:0001628	SO:0001631	\N	"A sequence variant located in the intergenic region, between genes." [SO:ke]	SO:0001631	"A sequence variant located 5' of a gene." [SO:ke]	491256	\N	\N	sequence	1	SO	intergenic_variant	upstream_gene_variant
SO:0001878	SO:0001628	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001631	"A sequence variant located 5' of a gene." [SO:ke]	1073861	\N	\N	sequence	2	SO	feature_variant	upstream_gene_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001631	"A sequence variant located 5' of a gene." [SO:ke]	1904976	\N	\N	sequence	3	SO	structural_variant	upstream_gene_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001631	"A sequence variant located 5' of a gene." [SO:ke]	2929404	\N	\N	sequence	4	SO	sequence_variant	upstream_gene_variant
SO:0001632	\N	\N	"A sequence variant located 3' of a gene." [SO:ke]	SO:0001632	"A sequence variant located 3' of a gene." [SO:ke]	46500	\N	\N	sequence	0	SO	downstream_gene_variant	downstream_gene_variant
SO:0001628	SO:0001632	\N	"A sequence variant located in the intergenic region, between genes." [SO:ke]	SO:0001632	"A sequence variant located 3' of a gene." [SO:ke]	491257	\N	\N	sequence	1	SO	intergenic_variant	downstream_gene_variant
SO:0001878	SO:0001628	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001632	"A sequence variant located 3' of a gene." [SO:ke]	1073862	\N	\N	sequence	2	SO	feature_variant	downstream_gene_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001632	"A sequence variant located 3' of a gene." [SO:ke]	1904977	\N	\N	sequence	3	SO	structural_variant	downstream_gene_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001632	"A sequence variant located 3' of a gene." [SO:ke]	2929405	\N	\N	sequence	4	SO	sequence_variant	downstream_gene_variant
SO:0001633	\N	\N	"A sequence variant located within 5 KB of the end of a gene." [SO:ke]	SO:0001633	"A sequence variant located within 5 KB of the end of a gene." [SO:ke]	46501	\N	\N	sequence	0	SO	5KB_downstream_variant	5KB_downstream_variant
SO:0001632	SO:0001633	\N	"A sequence variant located 3' of a gene." [SO:ke]	SO:0001633	"A sequence variant located within 5 KB of the end of a gene." [SO:ke]	491258	\N	\N	sequence	1	SO	downstream_gene_variant	5KB_downstream_variant
SO:0001628	SO:0001632	\N	"A sequence variant located in the intergenic region, between genes." [SO:ke]	SO:0001633	"A sequence variant located within 5 KB of the end of a gene." [SO:ke]	1073863	\N	\N	sequence	2	SO	intergenic_variant	5KB_downstream_variant
SO:0001878	SO:0001628	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001633	"A sequence variant located within 5 KB of the end of a gene." [SO:ke]	1904978	\N	\N	sequence	3	SO	feature_variant	5KB_downstream_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001633	"A sequence variant located within 5 KB of the end of a gene." [SO:ke]	2929406	\N	\N	sequence	4	SO	structural_variant	5KB_downstream_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001633	"A sequence variant located within 5 KB of the end of a gene." [SO:ke]	4002507	\N	\N	sequence	5	SO	sequence_variant	5KB_downstream_variant
SO:0001634	\N	\N	"A sequence variant located within a half KB of the end of a gene." [SO:ke]	SO:0001634	"A sequence variant located within a half KB of the end of a gene." [SO:ke]	46502	\N	\N	sequence	0	SO	500B_downstream_variant	500B_downstream_variant
SO:0001632	SO:0001634	\N	"A sequence variant located 3' of a gene." [SO:ke]	SO:0001634	"A sequence variant located within a half KB of the end of a gene." [SO:ke]	491259	\N	\N	sequence	1	SO	downstream_gene_variant	500B_downstream_variant
SO:0001628	SO:0001632	\N	"A sequence variant located in the intergenic region, between genes." [SO:ke]	SO:0001634	"A sequence variant located within a half KB of the end of a gene." [SO:ke]	1073864	\N	\N	sequence	2	SO	intergenic_variant	500B_downstream_variant
SO:0001878	SO:0001628	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001634	"A sequence variant located within a half KB of the end of a gene." [SO:ke]	1904979	\N	\N	sequence	3	SO	feature_variant	500B_downstream_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001634	"A sequence variant located within a half KB of the end of a gene." [SO:ke]	2929407	\N	\N	sequence	4	SO	structural_variant	500B_downstream_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001634	"A sequence variant located within a half KB of the end of a gene." [SO:ke]	4002508	\N	\N	sequence	5	SO	sequence_variant	500B_downstream_variant
SO:0001635	\N	\N	"A sequence variant located within 5KB 5' of a gene." [SO:ke]	SO:0001635	"A sequence variant located within 5KB 5' of a gene." [SO:ke]	46503	\N	\N	sequence	0	SO	5KB_upstream_variant	5KB_upstream_variant
SO:0001631	SO:0001635	\N	"A sequence variant located 5' of a gene." [SO:ke]	SO:0001635	"A sequence variant located within 5KB 5' of a gene." [SO:ke]	491260	\N	\N	sequence	1	SO	upstream_gene_variant	5KB_upstream_variant
SO:0001628	SO:0001631	\N	"A sequence variant located in the intergenic region, between genes." [SO:ke]	SO:0001635	"A sequence variant located within 5KB 5' of a gene." [SO:ke]	1073865	\N	\N	sequence	2	SO	intergenic_variant	5KB_upstream_variant
SO:0001878	SO:0001628	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001635	"A sequence variant located within 5KB 5' of a gene." [SO:ke]	1904980	\N	\N	sequence	3	SO	feature_variant	5KB_upstream_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001635	"A sequence variant located within 5KB 5' of a gene." [SO:ke]	2929408	\N	\N	sequence	4	SO	structural_variant	5KB_upstream_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001635	"A sequence variant located within 5KB 5' of a gene." [SO:ke]	4002509	\N	\N	sequence	5	SO	sequence_variant	5KB_upstream_variant
SO:0001636	\N	\N	"A sequence variant located within 2KB 5' of a gene." [SO:ke]	SO:0001636	"A sequence variant located within 2KB 5' of a gene." [SO:ke]	46504	\N	\N	sequence	0	SO	2KB_upstream_variant	2KB_upstream_variant
SO:0001631	SO:0001636	\N	"A sequence variant located 5' of a gene." [SO:ke]	SO:0001636	"A sequence variant located within 2KB 5' of a gene." [SO:ke]	491261	\N	\N	sequence	1	SO	upstream_gene_variant	2KB_upstream_variant
SO:0001628	SO:0001631	\N	"A sequence variant located in the intergenic region, between genes." [SO:ke]	SO:0001636	"A sequence variant located within 2KB 5' of a gene." [SO:ke]	1073866	\N	\N	sequence	2	SO	intergenic_variant	2KB_upstream_variant
SO:0001878	SO:0001628	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001636	"A sequence variant located within 2KB 5' of a gene." [SO:ke]	1904981	\N	\N	sequence	3	SO	feature_variant	2KB_upstream_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001636	"A sequence variant located within 2KB 5' of a gene." [SO:ke]	2929409	\N	\N	sequence	4	SO	structural_variant	2KB_upstream_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001636	"A sequence variant located within 2KB 5' of a gene." [SO:ke]	4002510	\N	\N	sequence	5	SO	sequence_variant	2KB_upstream_variant
SO:0001637	\N	\N	"A gene that encodes for ribosomal RNA." [SO:ke]	SO:0001637	"A gene that encodes for ribosomal RNA." [SO:ke]	46505	\N	\N	sequence	0	SO	rRNA_gene	rRNA_gene
SO:0001263	SO:0001637	\N	"A gene that encodes a non-coding RNA." []	SO:0001637	"A gene that encodes for ribosomal RNA." [SO:ke]	491262	\N	\N	sequence	1	SO	ncRNA_gene	rRNA_gene
SO:0000704	SO:0001263	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0001637	"A gene that encodes for ribosomal RNA." [SO:ke]	1073867	\N	SOFA	sequence	2	SO	gene	rRNA_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001637	"A gene that encodes for ribosomal RNA." [SO:ke]	1904982	SOFA	SOFA	sequence	3	SO	biological_region	rRNA_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001637	"A gene that encodes for ribosomal RNA." [SO:ke]	2929410	SOFA	SOFA	sequence	4	SO	region	rRNA_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001637	"A gene that encodes for ribosomal RNA." [SO:ke]	4002511	SOFA	SOFA	sequence	5	SO	sequence_feature	rRNA_gene
SO:0001638	\N	\N	"A gene that encodes for an piwi associated RNA." [SO:ke]	SO:0001638	"A gene that encodes for an piwi associated RNA." [SO:ke]	46506	\N	\N	sequence	0	SO	piRNA_gene	piRNA_gene
SO:0001263	SO:0001638	\N	"A gene that encodes a non-coding RNA." []	SO:0001638	"A gene that encodes for an piwi associated RNA." [SO:ke]	491263	\N	\N	sequence	1	SO	ncRNA_gene	piRNA_gene
SO:0000704	SO:0001263	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0001638	"A gene that encodes for an piwi associated RNA." [SO:ke]	1073868	\N	SOFA	sequence	2	SO	gene	piRNA_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001638	"A gene that encodes for an piwi associated RNA." [SO:ke]	1904983	SOFA	SOFA	sequence	3	SO	biological_region	piRNA_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001638	"A gene that encodes for an piwi associated RNA." [SO:ke]	2929411	SOFA	SOFA	sequence	4	SO	region	piRNA_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001638	"A gene that encodes for an piwi associated RNA." [SO:ke]	4002512	SOFA	SOFA	sequence	5	SO	sequence_feature	piRNA_gene
SO:0001639	\N	\N	"A gene that encodes an RNase P RNA." [SO:ke]	SO:0001639	"A gene that encodes an RNase P RNA." [SO:ke]	46507	\N	\N	sequence	0	SO	RNase_P_RNA_gene	RNase_P_RNA_gene
SO:0001263	SO:0001639	\N	"A gene that encodes a non-coding RNA." []	SO:0001639	"A gene that encodes an RNase P RNA." [SO:ke]	491264	\N	\N	sequence	1	SO	ncRNA_gene	RNase_P_RNA_gene
SO:0000704	SO:0001263	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0001639	"A gene that encodes an RNase P RNA." [SO:ke]	1073869	\N	SOFA	sequence	2	SO	gene	RNase_P_RNA_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001639	"A gene that encodes an RNase P RNA." [SO:ke]	1904984	SOFA	SOFA	sequence	3	SO	biological_region	RNase_P_RNA_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001639	"A gene that encodes an RNase P RNA." [SO:ke]	2929412	SOFA	SOFA	sequence	4	SO	region	RNase_P_RNA_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001639	"A gene that encodes an RNase P RNA." [SO:ke]	4002513	SOFA	SOFA	sequence	5	SO	sequence_feature	RNase_P_RNA_gene
SO:0001640	\N	\N	"A gene that encodes a RNase_MRP_RNA." [SO:ke]	SO:0001640	"A gene that encodes a RNase_MRP_RNA." [SO:ke]	46508	\N	\N	sequence	0	SO	RNase_MRP_RNA_gene	RNase_MRP_RNA_gene
SO:0001263	SO:0001640	\N	"A gene that encodes a non-coding RNA." []	SO:0001640	"A gene that encodes a RNase_MRP_RNA." [SO:ke]	491265	\N	\N	sequence	1	SO	ncRNA_gene	RNase_MRP_RNA_gene
SO:0000704	SO:0001263	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0001640	"A gene that encodes a RNase_MRP_RNA." [SO:ke]	1073870	\N	SOFA	sequence	2	SO	gene	RNase_MRP_RNA_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001640	"A gene that encodes a RNase_MRP_RNA." [SO:ke]	1904985	SOFA	SOFA	sequence	3	SO	biological_region	RNase_MRP_RNA_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001640	"A gene that encodes a RNase_MRP_RNA." [SO:ke]	2929413	SOFA	SOFA	sequence	4	SO	region	RNase_MRP_RNA_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001640	"A gene that encodes a RNase_MRP_RNA." [SO:ke]	4002514	SOFA	SOFA	sequence	5	SO	sequence_feature	RNase_MRP_RNA_gene
SO:0001641	\N	\N	"A gene that encodes a long, intervening non-coding RNA." [http://www.gencodegenes.org/gencode_biotypes.html, PMID:23463798, SO:ke]	SO:0001641	"A gene that encodes a long, intervening non-coding RNA." [http://www.gencodegenes.org/gencode_biotypes.html, PMID:23463798, SO:ke]	46509	\N	\N	sequence	0	SO	lincRNA_gene	lincRNA_gene
SO:0002127	SO:0001641	\N	"A gene that encodes a long non-coding RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0001641	"A gene that encodes a long, intervening non-coding RNA." [http://www.gencodegenes.org/gencode_biotypes.html, PMID:23463798, SO:ke]	491266	\N	\N	sequence	1	SO	lncRNA_gene	lincRNA_gene
SO:0001263	SO:0002127	\N	"A gene that encodes a non-coding RNA." []	SO:0001641	"A gene that encodes a long, intervening non-coding RNA." [http://www.gencodegenes.org/gencode_biotypes.html, PMID:23463798, SO:ke]	1073871	\N	\N	sequence	2	SO	ncRNA_gene	lincRNA_gene
SO:0000704	SO:0001263	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0001641	"A gene that encodes a long, intervening non-coding RNA." [http://www.gencodegenes.org/gencode_biotypes.html, PMID:23463798, SO:ke]	1904986	\N	SOFA	sequence	3	SO	gene	lincRNA_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001641	"A gene that encodes a long, intervening non-coding RNA." [http://www.gencodegenes.org/gencode_biotypes.html, PMID:23463798, SO:ke]	2929414	SOFA	SOFA	sequence	4	SO	biological_region	lincRNA_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001641	"A gene that encodes a long, intervening non-coding RNA." [http://www.gencodegenes.org/gencode_biotypes.html, PMID:23463798, SO:ke]	4002515	SOFA	SOFA	sequence	5	SO	region	lincRNA_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001641	"A gene that encodes a long, intervening non-coding RNA." [http://www.gencodegenes.org/gencode_biotypes.html, PMID:23463798, SO:ke]	4966781	SOFA	SOFA	sequence	6	SO	sequence_feature	lincRNA_gene
SO:0001642	\N	\N	"A mathematically defined repeat (MDR) is a experimental feature that is determined by querying overlapping oligomers of length k against a database of shotgun sequence data and identifying regions in the query sequence that exceed a statistically determined threshold of repetitiveness." [SO:jestill]	SO:0001642	"A mathematically defined repeat (MDR) is a experimental feature that is determined by querying overlapping oligomers of length k against a database of shotgun sequence data and identifying regions in the query sequence that exceed a statistically determined threshold of repetitiveness." [SO:jestill]	46510	\N	\N	sequence	0	SO	mathematically_defined_repeat	mathematically_defined_repeat
SO:0001410	SO:0001642	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001642	"A mathematically defined repeat (MDR) is a experimental feature that is determined by querying overlapping oligomers of length k against a database of shotgun sequence data and identifying regions in the query sequence that exceed a statistically determined threshold of repetitiveness." [SO:jestill]	491267	\N	SOFA	sequence	1	SO	experimental_feature	mathematically_defined_repeat
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001642	"A mathematically defined repeat (MDR) is a experimental feature that is determined by querying overlapping oligomers of length k against a database of shotgun sequence data and identifying regions in the query sequence that exceed a statistically determined threshold of repetitiveness." [SO:jestill]	1073872	SOFA	SOFA	sequence	2	SO	region	mathematically_defined_repeat
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001642	"A mathematically defined repeat (MDR) is a experimental feature that is determined by querying overlapping oligomers of length k against a database of shotgun sequence data and identifying regions in the query sequence that exceed a statistically determined threshold of repetitiveness." [SO:jestill]	1904987	SOFA	SOFA	sequence	3	SO	sequence_feature	mathematically_defined_repeat
SO:0001643	\N	\N	"A telomerase RNA gene is a non coding RNA gene the RNA product of which is a component of telomerase." [SO:ke]	SO:0001643	"A telomerase RNA gene is a non coding RNA gene the RNA product of which is a component of telomerase." [SO:ke]	46511	\N	\N	sequence	0	SO	telomerase_RNA_gene	telomerase_RNA_gene
SO:0001263	SO:0001643	\N	"A gene that encodes a non-coding RNA." []	SO:0001643	"A telomerase RNA gene is a non coding RNA gene the RNA product of which is a component of telomerase." [SO:ke]	491268	\N	\N	sequence	1	SO	ncRNA_gene	telomerase_RNA_gene
SO:0000704	SO:0001263	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0001643	"A telomerase RNA gene is a non coding RNA gene the RNA product of which is a component of telomerase." [SO:ke]	1073873	\N	SOFA	sequence	2	SO	gene	telomerase_RNA_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001643	"A telomerase RNA gene is a non coding RNA gene the RNA product of which is a component of telomerase." [SO:ke]	1904988	SOFA	SOFA	sequence	3	SO	biological_region	telomerase_RNA_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001643	"A telomerase RNA gene is a non coding RNA gene the RNA product of which is a component of telomerase." [SO:ke]	2929415	SOFA	SOFA	sequence	4	SO	region	telomerase_RNA_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001643	"A telomerase RNA gene is a non coding RNA gene the RNA product of which is a component of telomerase." [SO:ke]	4002516	SOFA	SOFA	sequence	5	SO	sequence_feature	telomerase_RNA_gene
SO:0001644	\N	\N	"An engineered vector that is able to take part in homologous recombination in a host with the intent of introducing site specific genomic modifications." [MGD:tm, PMID:10354467]	SO:0001644	"An engineered vector that is able to take part in homologous recombination in a host with the intent of introducing site specific genomic modifications." [MGD:tm, PMID:10354467]	46512	\N	\N	sequence	0	SO	targeting_vector	targeting_vector
SO:0000440	SO:0001644	\N	"A replicon that has been modified to act as a vector for foreign sequence." [SO:ma]	SO:0001644	"An engineered vector that is able to take part in homologous recombination in a host with the intent of introducing site specific genomic modifications." [MGD:tm, PMID:10354467]	491269	\N	\N	sequence	1	SO	vector_replicon	targeting_vector
SO:0000804	SO:0001644	\N	"A region that is engineered." [SO:xp]	SO:0001644	"An engineered vector that is able to take part in homologous recombination in a host with the intent of introducing site specific genomic modifications." [MGD:tm, PMID:10354467]	491270	\N	\N	sequence	1	SO	engineered_region	targeting_vector
SO:0000151	SO:0000440	\N	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0001644	"An engineered vector that is able to take part in homologous recombination in a host with the intent of introducing site specific genomic modifications." [MGD:tm, PMID:10354467]	1073874	\N	SOFA	sequence	2	SO	clone	targeting_vector
SO:0001235	SO:0000440	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001644	"An engineered vector that is able to take part in homologous recombination in a host with the intent of introducing site specific genomic modifications." [MGD:tm, PMID:10354467]	1073875	\N	SOFA	sequence	2	SO	replicon	targeting_vector
SO:0001409	SO:0000804	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001644	"An engineered vector that is able to take part in homologous recombination in a host with the intent of introducing site specific genomic modifications." [MGD:tm, PMID:10354467]	1073876	\N	SOFA	sequence	2	SO	biomaterial_region	targeting_vector
SO:0000695	SO:0000151	\N	"A sequence used in experiment." [SO:ke]	SO:0001644	"An engineered vector that is able to take part in homologous recombination in a host with the intent of introducing site specific genomic modifications." [MGD:tm, PMID:10354467]	1904989	SOFA	SOFA	sequence	3	SO	reagent	targeting_vector
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001644	"An engineered vector that is able to take part in homologous recombination in a host with the intent of introducing site specific genomic modifications." [MGD:tm, PMID:10354467]	1904990	SOFA	SOFA	sequence	3	SO	biological_region	targeting_vector
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001644	"An engineered vector that is able to take part in homologous recombination in a host with the intent of introducing site specific genomic modifications." [MGD:tm, PMID:10354467]	4002517	SOFA	SOFA	sequence	5	SO	region	targeting_vector
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001644	"An engineered vector that is able to take part in homologous recombination in a host with the intent of introducing site specific genomic modifications." [MGD:tm, PMID:10354467]	2929416	SOFA	SOFA	sequence	4	SO	biomaterial_region	targeting_vector
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001644	"An engineered vector that is able to take part in homologous recombination in a host with the intent of introducing site specific genomic modifications." [MGD:tm, PMID:10354467]	2929417	SOFA	SOFA	sequence	4	SO	region	targeting_vector
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001644	"An engineered vector that is able to take part in homologous recombination in a host with the intent of introducing site specific genomic modifications." [MGD:tm, PMID:10354467]	4132332	SOFA	SOFA	sequence	6	SO	sequence_feature	targeting_vector
SO:0001645	\N	\N	"A measurable sequence feature that varies within a population." [SO:db]	SO:0001645	"A measurable sequence feature that varies within a population." [SO:db]	46513	\N	\N	sequence	0	SO	genetic_marker	genetic_marker
SO:0001411	SO:0001645	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001645	"A measurable sequence feature that varies within a population." [SO:db]	491271	\N	SOFA	sequence	1	SO	biological_region	genetic_marker
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001645	"A measurable sequence feature that varies within a population." [SO:db]	1073877	SOFA	SOFA	sequence	2	SO	region	genetic_marker
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001645	"A measurable sequence feature that varies within a population." [SO:db]	1904992	SOFA	SOFA	sequence	3	SO	sequence_feature	genetic_marker
SO:0001646	\N	\N	"A genetic marker, discovered using Diversity Arrays Technology (DArT) technology." [SO:ke]	SO:0001646	"A genetic marker, discovered using Diversity Arrays Technology (DArT) technology." [SO:ke]	46514	\N	\N	sequence	0	SO	DArT_marker	DArT_marker
SO:0001645	SO:0001646	\N	"A measurable sequence feature that varies within a population." [SO:db]	SO:0001646	"A genetic marker, discovered using Diversity Arrays Technology (DArT) technology." [SO:ke]	491272	\N	\N	sequence	1	SO	genetic_marker	DArT_marker
SO:0001411	SO:0001645	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001646	"A genetic marker, discovered using Diversity Arrays Technology (DArT) technology." [SO:ke]	1073878	\N	SOFA	sequence	2	SO	biological_region	DArT_marker
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001646	"A genetic marker, discovered using Diversity Arrays Technology (DArT) technology." [SO:ke]	1904993	SOFA	SOFA	sequence	3	SO	region	DArT_marker
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001646	"A genetic marker, discovered using Diversity Arrays Technology (DArT) technology." [SO:ke]	2929419	SOFA	SOFA	sequence	4	SO	sequence_feature	DArT_marker
SO:0001647	\N	SOFA	"A kind of ribosome entry site, specific to Eukaryotic organisms that overlaps part of both 5' UTR and CDS sequence." [SO:ke]	SO:0001647	"A kind of ribosome entry site, specific to Eukaryotic organisms that overlaps part of both 5' UTR and CDS sequence." [SO:ke]	46515	\N	SOFA	sequence	0	SO	kozak_sequence	kozak_sequence
SO:0000139	SO:0001647	SOFA	"Region in mRNA where ribosome assembles." [SO:ke]	SO:0001647	"A kind of ribosome entry site, specific to Eukaryotic organisms that overlaps part of both 5' UTR and CDS sequence." [SO:ke]	491273	SOFA	SOFA	sequence	1	SO	ribosome_entry_site	kozak_sequence
SO:0000204	SO:0000139	SOFA	"A region at the 5' end of a mature transcript (preceding the initiation codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001647	"A kind of ribosome entry site, specific to Eukaryotic organisms that overlaps part of both 5' UTR and CDS sequence." [SO:ke]	1073879	SOFA	SOFA	sequence	2	SO	five_prime_UTR	kozak_sequence
SO:0000836	SO:0000139	SOFA	"A region of an mRNA." [SO:cb]	SO:0001647	"A kind of ribosome entry site, specific to Eukaryotic organisms that overlaps part of both 5' UTR and CDS sequence." [SO:ke]	1073880	SOFA	SOFA	sequence	2	SO	mRNA_region	kozak_sequence
SO:0000203	SO:0000204	SOFA	"Messenger RNA sequences that are untranslated and lie five prime or three prime to sequences which are translated." [SO:ke]	SO:0001647	"A kind of ribosome entry site, specific to Eukaryotic organisms that overlaps part of both 5' UTR and CDS sequence." [SO:ke]	1904994	SOFA	SOFA	sequence	3	SO	UTR	kozak_sequence
SO:0000234	SO:0000836	SOFA	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0001647	"A kind of ribosome entry site, specific to Eukaryotic organisms that overlaps part of both 5' UTR and CDS sequence." [SO:ke]	4002519	SOFA	SOFA	sequence	5	SO	mRNA	kozak_sequence
SO:0000834	SO:0000836	SOFA	"A region of a mature transcript." [SO:ke]	SO:0001647	"A kind of ribosome entry site, specific to Eukaryotic organisms that overlaps part of both 5' UTR and CDS sequence." [SO:ke]	4002520	SOFA	SOFA	sequence	5	SO	mature_transcript_region	kozak_sequence
SO:0000836	SO:0000203	SOFA	"A region of an mRNA." [SO:cb]	SO:0001647	"A kind of ribosome entry site, specific to Eukaryotic organisms that overlaps part of both 5' UTR and CDS sequence." [SO:ke]	2929420	SOFA	SOFA	sequence	4	SO	mRNA_region	kozak_sequence
SO:0000233	SO:0000234	SOFA	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001647	"A kind of ribosome entry site, specific to Eukaryotic organisms that overlaps part of both 5' UTR and CDS sequence." [SO:ke]	4132333	SOFA	SOFA	sequence	6	SO	mature_transcript	kozak_sequence
SO:0000833	SO:0000834	SOFA	"A region of a transcript." [SO:ke]	SO:0001647	"A kind of ribosome entry site, specific to Eukaryotic organisms that overlaps part of both 5' UTR and CDS sequence." [SO:ke]	4132334	SOFA	SOFA	sequence	6	SO	transcript_region	kozak_sequence
SO:0000673	SO:0000233	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001647	"A kind of ribosome entry site, specific to Eukaryotic organisms that overlaps part of both 5' UTR and CDS sequence." [SO:ke]	5180743	SOFA	SOFA	sequence	7	SO	transcript	kozak_sequence
SO:0000673	SO:0000833	SOFA	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001647	"A kind of ribosome entry site, specific to Eukaryotic organisms that overlaps part of both 5' UTR and CDS sequence." [SO:ke]	5180744	SOFA	SOFA	sequence	7	SO	transcript	kozak_sequence
SO:0001411	SO:0000833	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001647	"A kind of ribosome entry site, specific to Eukaryotic organisms that overlaps part of both 5' UTR and CDS sequence." [SO:ke]	5180745	SOFA	SOFA	sequence	7	SO	biological_region	kozak_sequence
SO:0000831	SO:0000673	SOFA	"A region of a gene." [SO:ke]	SO:0001647	"A kind of ribosome entry site, specific to Eukaryotic organisms that overlaps part of both 5' UTR and CDS sequence." [SO:ke]	5996449	SOFA	SOFA	sequence	8	SO	gene_member_region	kozak_sequence
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001647	"A kind of ribosome entry site, specific to Eukaryotic organisms that overlaps part of both 5' UTR and CDS sequence." [SO:ke]	6888939	SOFA	SOFA	sequence	10	SO	region	kozak_sequence
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001647	"A kind of ribosome entry site, specific to Eukaryotic organisms that overlaps part of both 5' UTR and CDS sequence." [SO:ke]	6550285	SOFA	SOFA	sequence	9	SO	biological_region	kozak_sequence
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001647	"A kind of ribosome entry site, specific to Eukaryotic organisms that overlaps part of both 5' UTR and CDS sequence." [SO:ke]	7048471	SOFA	SOFA	sequence	11	SO	sequence_feature	kozak_sequence
SO:0001648	\N	\N	"A transposon that is disrupted by the insertion of another element." [SO:ke]	SO:0001648	"A transposon that is disrupted by the insertion of another element." [SO:ke]	46516	\N	\N	sequence	0	SO	nested_transposon	nested_transposon
SO:0000101	SO:0001648	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0001648	"A transposon that is disrupted by the insertion of another element." [SO:ke]	491274	\N	SOFA	sequence	1	SO	transposable_element	nested_transposon
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0001648	"A transposon that is disrupted by the insertion of another element." [SO:ke]	1073881	SOFA	SOFA	sequence	2	SO	integrated_mobile_genetic_element	nested_transposon
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0001648	"A transposon that is disrupted by the insertion of another element." [SO:ke]	1904997	SOFA	SOFA	sequence	3	SO	mobile_genetic_element	nested_transposon
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001648	"A transposon that is disrupted by the insertion of another element." [SO:ke]	2929423	SOFA	SOFA	sequence	4	SO	biological_region	nested_transposon
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001648	"A transposon that is disrupted by the insertion of another element." [SO:ke]	4002524	SOFA	SOFA	sequence	5	SO	region	nested_transposon
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001648	"A transposon that is disrupted by the insertion of another element." [SO:ke]	4966784	SOFA	SOFA	sequence	6	SO	sequence_feature	nested_transposon
SO:0001649	\N	\N	"A repeat that is disrupted by the insertion of another element." [SO:ke]	SO:0001649	"A repeat that is disrupted by the insertion of another element." [SO:ke]	46517	\N	\N	sequence	0	SO	nested_repeat	nested_repeat
SO:0000657	SO:0001649	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0001649	"A repeat that is disrupted by the insertion of another element." [SO:ke]	491275	\N	SOFA	sequence	1	SO	repeat_region	nested_repeat
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001649	"A repeat that is disrupted by the insertion of another element." [SO:ke]	1073882	SOFA	SOFA	sequence	2	SO	biological_region	nested_repeat
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001649	"A repeat that is disrupted by the insertion of another element." [SO:ke]	1904998	SOFA	SOFA	sequence	3	SO	region	nested_repeat
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001649	"A repeat that is disrupted by the insertion of another element." [SO:ke]	2929424	SOFA	SOFA	sequence	4	SO	sequence_feature	nested_repeat
SO:0001650	\N	\N	"A sequence variant which does not cause a disruption of the translational reading frame." [SO:ke]	SO:0001650	"A sequence variant which does not cause a disruption of the translational reading frame." [SO:ke]	46518	\N	\N	sequence	0	SO	inframe_variant	inframe_variant
SO:0001818	SO:0001650	\N	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	SO:0001650	"A sequence variant which does not cause a disruption of the translational reading frame." [SO:ke]	491276	\N	\N	sequence	1	SO	protein_altering_variant	inframe_variant
SO:0001580	SO:0001818	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001650	"A sequence variant which does not cause a disruption of the translational reading frame." [SO:ke]	1073883	\N	\N	sequence	2	SO	coding_sequence_variant	inframe_variant
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001650	"A sequence variant which does not cause a disruption of the translational reading frame." [SO:ke]	1904999	\N	\N	sequence	3	SO	exon_variant	inframe_variant
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001650	"A sequence variant which does not cause a disruption of the translational reading frame." [SO:ke]	1905000	\N	\N	sequence	3	SO	coding_transcript_variant	inframe_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001650	"A sequence variant which does not cause a disruption of the translational reading frame." [SO:ke]	2929425	\N	\N	sequence	4	SO	transcript_variant	inframe_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001650	"A sequence variant which does not cause a disruption of the translational reading frame." [SO:ke]	2929426	\N	\N	sequence	4	SO	transcript_variant	inframe_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001650	"A sequence variant which does not cause a disruption of the translational reading frame." [SO:ke]	4002525	\N	\N	sequence	5	SO	gene_variant	inframe_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001650	"A sequence variant which does not cause a disruption of the translational reading frame." [SO:ke]	4966785	\N	\N	sequence	6	SO	feature_variant	inframe_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001650	"A sequence variant which does not cause a disruption of the translational reading frame." [SO:ke]	5741378	\N	\N	sequence	7	SO	structural_variant	inframe_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001650	"A sequence variant which does not cause a disruption of the translational reading frame." [SO:ke]	6311136	\N	\N	sequence	8	SO	sequence_variant	inframe_variant
SO:0001653	\N	\N	"A transcription factor binding site of variable direct repeats of the sequence PuGGTCA spaced by five nucleotides (DR5) found in the promoters of retinoic acid-responsive genes, to which retinoic acid receptors bind." [PMID:11327309, PMID:19917671]	SO:0001653	"A transcription factor binding site of variable direct repeats of the sequence PuGGTCA spaced by five nucleotides (DR5) found in the promoters of retinoic acid-responsive genes, to which retinoic acid receptors bind." [PMID:11327309, PMID:19917671]	46519	\N	\N	sequence	0	SO	retinoic_acid_responsive_element	retinoic_acid_responsive_element
SO:0000167	SO:0001653	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001653	"A transcription factor binding site of variable direct repeats of the sequence PuGGTCA spaced by five nucleotides (DR5) found in the promoters of retinoic acid-responsive genes, to which retinoic acid receptors bind." [PMID:11327309, PMID:19917671]	491277	\N	SOFA	sequence	1	SO	promoter	retinoic_acid_responsive_element
SO:0000713	SO:0001653	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001653	"A transcription factor binding site of variable direct repeats of the sequence PuGGTCA spaced by five nucleotides (DR5) found in the promoters of retinoic acid-responsive genes, to which retinoic acid receptors bind." [PMID:11327309, PMID:19917671]	491278	\N	\N	sequence	1	SO	DNA_motif	retinoic_acid_responsive_element
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001653	"A transcription factor binding site of variable direct repeats of the sequence PuGGTCA spaced by five nucleotides (DR5) found in the promoters of retinoic acid-responsive genes, to which retinoic acid receptors bind." [PMID:11327309, PMID:19917671]	1073884	SOFA	SOFA	sequence	2	SO	transcriptional_cis_regulatory_region	retinoic_acid_responsive_element
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001653	"A transcription factor binding site of variable direct repeats of the sequence PuGGTCA spaced by five nucleotides (DR5) found in the promoters of retinoic acid-responsive genes, to which retinoic acid receptors bind." [PMID:11327309, PMID:19917671]	1073885	\N	SOFA	sequence	2	SO	nucleotide_motif	retinoic_acid_responsive_element
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001653	"A transcription factor binding site of variable direct repeats of the sequence PuGGTCA spaced by five nucleotides (DR5) found in the promoters of retinoic acid-responsive genes, to which retinoic acid receptors bind." [PMID:11327309, PMID:19917671]	1905001	SOFA	SOFA	sequence	3	SO	transcription_regulatory_region	retinoic_acid_responsive_element
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001653	"A transcription factor binding site of variable direct repeats of the sequence PuGGTCA spaced by five nucleotides (DR5) found in the promoters of retinoic acid-responsive genes, to which retinoic acid receptors bind." [PMID:11327309, PMID:19917671]	1905002	SOFA	SOFA	sequence	3	SO	sequence_motif	retinoic_acid_responsive_element
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001653	"A transcription factor binding site of variable direct repeats of the sequence PuGGTCA spaced by five nucleotides (DR5) found in the promoters of retinoic acid-responsive genes, to which retinoic acid receptors bind." [PMID:11327309, PMID:19917671]	2929427	SOFA	SOFA	sequence	4	SO	regulatory_region	retinoic_acid_responsive_element
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001653	"A transcription factor binding site of variable direct repeats of the sequence PuGGTCA spaced by five nucleotides (DR5) found in the promoters of retinoic acid-responsive genes, to which retinoic acid receptors bind." [PMID:11327309, PMID:19917671]	2929428	SOFA	SOFA	sequence	4	SO	biological_region	retinoic_acid_responsive_element
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001653	"A transcription factor binding site of variable direct repeats of the sequence PuGGTCA spaced by five nucleotides (DR5) found in the promoters of retinoic acid-responsive genes, to which retinoic acid receptors bind." [PMID:11327309, PMID:19917671]	4002526	SOFA	SOFA	sequence	5	SO	gene_member_region	retinoic_acid_responsive_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001653	"A transcription factor binding site of variable direct repeats of the sequence PuGGTCA spaced by five nucleotides (DR5) found in the promoters of retinoic acid-responsive genes, to which retinoic acid receptors bind." [PMID:11327309, PMID:19917671]	5741379	SOFA	SOFA	sequence	7	SO	region	retinoic_acid_responsive_element
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001653	"A transcription factor binding site of variable direct repeats of the sequence PuGGTCA spaced by five nucleotides (DR5) found in the promoters of retinoic acid-responsive genes, to which retinoic acid receptors bind." [PMID:11327309, PMID:19917671]	4966786	SOFA	SOFA	sequence	6	SO	biological_region	retinoic_acid_responsive_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001653	"A transcription factor binding site of variable direct repeats of the sequence PuGGTCA spaced by five nucleotides (DR5) found in the promoters of retinoic acid-responsive genes, to which retinoic acid receptors bind." [PMID:11327309, PMID:19917671]	5996451	SOFA	SOFA	sequence	8	SO	sequence_feature	retinoic_acid_responsive_element
SO:0001654	\N	SOFA	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	SO:0001654	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	46520	\N	SOFA	sequence	0	SO	nucleotide_to_protein_binding_site	nucleotide_to_protein_binding_site
SO:0000410	SO:0001654	SOFA	"A binding site that, in the molecule, interacts selectively and non-covalently with polypeptide molecules." [SO:ke]	SO:0001654	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	491279	SOFA	SOFA	sequence	1	SO	protein_binding_site	nucleotide_to_protein_binding_site
SO:0000409	SO:0000410	SOFA	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0001654	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	1073886	SOFA	biosapiens,SOFA	sequence	2	SO	binding_site	nucleotide_to_protein_binding_site
SO:0001411	SO:0000409	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001654	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	1905003	biosapiens,SOFA	SOFA	sequence	3	SO	biological_region	nucleotide_to_protein_binding_site
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001654	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	2929429	SOFA	SOFA	sequence	4	SO	region	nucleotide_to_protein_binding_site
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001654	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	4002528	SOFA	SOFA	sequence	5	SO	sequence_feature	nucleotide_to_protein_binding_site
SO:0001655	\N	\N	"A binding site that, in the molecule, interacts selectively and non-covalently with nucleotide residues." [SO:cb]	SO:0001655	"A binding site that, in the molecule, interacts selectively and non-covalently with nucleotide residues." [SO:cb]	46521	\N	\N	sequence	0	SO	nucleotide_binding_site	nucleotide_binding_site
SO:0000409	SO:0001655	\N	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0001655	"A binding site that, in the molecule, interacts selectively and non-covalently with nucleotide residues." [SO:cb]	491280	\N	biosapiens,SOFA	sequence	1	SO	binding_site	nucleotide_binding_site
SO:0001411	SO:0000409	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001655	"A binding site that, in the molecule, interacts selectively and non-covalently with nucleotide residues." [SO:cb]	1073887	biosapiens,SOFA	SOFA	sequence	2	SO	biological_region	nucleotide_binding_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001655	"A binding site that, in the molecule, interacts selectively and non-covalently with nucleotide residues." [SO:cb]	1905004	SOFA	SOFA	sequence	3	SO	region	nucleotide_binding_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001655	"A binding site that, in the molecule, interacts selectively and non-covalently with nucleotide residues." [SO:cb]	2929430	SOFA	SOFA	sequence	4	SO	sequence_feature	nucleotide_binding_site
SO:0001656	\N	\N	"A binding site that, in the molecule, interacts selectively and non-covalently with metal ions." [SO:cb]	SO:0001656	"A binding site that, in the molecule, interacts selectively and non-covalently with metal ions." [SO:cb]	46522	\N	\N	sequence	0	SO	metal_binding_site	metal_binding_site
SO:0000409	SO:0001656	\N	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0001656	"A binding site that, in the molecule, interacts selectively and non-covalently with metal ions." [SO:cb]	491281	\N	biosapiens,SOFA	sequence	1	SO	binding_site	metal_binding_site
SO:0001411	SO:0000409	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001656	"A binding site that, in the molecule, interacts selectively and non-covalently with metal ions." [SO:cb]	1073888	biosapiens,SOFA	SOFA	sequence	2	SO	biological_region	metal_binding_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001656	"A binding site that, in the molecule, interacts selectively and non-covalently with metal ions." [SO:cb]	1905005	SOFA	SOFA	sequence	3	SO	region	metal_binding_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001656	"A binding site that, in the molecule, interacts selectively and non-covalently with metal ions." [SO:cb]	2929431	SOFA	SOFA	sequence	4	SO	sequence_feature	metal_binding_site
SO:0001657	\N	\N	"A binding site that, in the molecule, interacts selectively and non-covalently with a small molecule such as a drug, or hormone." [SO:ke]	SO:0001657	"A binding site that, in the molecule, interacts selectively and non-covalently with a small molecule such as a drug, or hormone." [SO:ke]	46523	\N	\N	sequence	0	SO	ligand_binding_site	ligand_binding_site
SO:0000409	SO:0001657	\N	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0001657	"A binding site that, in the molecule, interacts selectively and non-covalently with a small molecule such as a drug, or hormone." [SO:ke]	491282	\N	biosapiens,SOFA	sequence	1	SO	binding_site	ligand_binding_site
SO:0001411	SO:0000409	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001657	"A binding site that, in the molecule, interacts selectively and non-covalently with a small molecule such as a drug, or hormone." [SO:ke]	1073889	biosapiens,SOFA	SOFA	sequence	2	SO	biological_region	ligand_binding_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001657	"A binding site that, in the molecule, interacts selectively and non-covalently with a small molecule such as a drug, or hormone." [SO:ke]	1905006	SOFA	SOFA	sequence	3	SO	region	ligand_binding_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001657	"A binding site that, in the molecule, interacts selectively and non-covalently with a small molecule such as a drug, or hormone." [SO:ke]	2929432	SOFA	SOFA	sequence	4	SO	sequence_feature	ligand_binding_site
SO:0001658	\N	\N	"An NTR is a nested repeat of two distinct tandem motifs interspersed with each other." [SO:AF]	SO:0001658	"An NTR is a nested repeat of two distinct tandem motifs interspersed with each other." [SO:AF]	46524	\N	\N	sequence	0	SO	nested_tandem_repeat	nested_tandem_repeat
SO:0001649	SO:0001658	\N	"A repeat that is disrupted by the insertion of another element." [SO:ke]	SO:0001658	"An NTR is a nested repeat of two distinct tandem motifs interspersed with each other." [SO:AF]	491283	\N	\N	sequence	1	SO	nested_repeat	nested_tandem_repeat
SO:0000657	SO:0001649	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0001658	"An NTR is a nested repeat of two distinct tandem motifs interspersed with each other." [SO:AF]	1073890	\N	SOFA	sequence	2	SO	repeat_region	nested_tandem_repeat
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001658	"An NTR is a nested repeat of two distinct tandem motifs interspersed with each other." [SO:AF]	1905007	SOFA	SOFA	sequence	3	SO	biological_region	nested_tandem_repeat
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001658	"An NTR is a nested repeat of two distinct tandem motifs interspersed with each other." [SO:AF]	2929433	SOFA	SOFA	sequence	4	SO	region	nested_tandem_repeat
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001658	"An NTR is a nested repeat of two distinct tandem motifs interspersed with each other." [SO:AF]	4002529	SOFA	SOFA	sequence	5	SO	sequence_feature	nested_tandem_repeat
SO:0001659	\N	\N	"" []	SO:0001659	"" []	46525	\N	\N	sequence	0	SO	promoter_element	promoter_element
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001659	"" []	491284	\N	\N	sequence	1	SO	DNA_motif	promoter_element
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001659	"" []	1073891	\N	SOFA	sequence	2	SO	nucleotide_motif	promoter_element
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001659	"" []	1905008	SOFA	SOFA	sequence	3	SO	sequence_motif	promoter_element
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001659	"" []	2929434	SOFA	SOFA	sequence	4	SO	biological_region	promoter_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001659	"" []	4002530	SOFA	SOFA	sequence	5	SO	region	promoter_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001659	"" []	4966788	SOFA	SOFA	sequence	6	SO	sequence_feature	promoter_element
SO:0001660	\N	\N	"" []	SO:0001660	"" []	46526	\N	\N	sequence	0	SO	core_promoter_element	core_promoter_element
SO:0001659	SO:0001660	\N	"" []	SO:0001660	"" []	491285	\N	\N	sequence	1	SO	promoter_element	core_promoter_element
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001660	"" []	1073892	\N	\N	sequence	2	SO	DNA_motif	core_promoter_element
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001660	"" []	1905009	\N	SOFA	sequence	3	SO	nucleotide_motif	core_promoter_element
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001660	"" []	2929435	SOFA	SOFA	sequence	4	SO	sequence_motif	core_promoter_element
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001660	"" []	4002531	SOFA	SOFA	sequence	5	SO	biological_region	core_promoter_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001660	"" []	4966789	SOFA	SOFA	sequence	6	SO	region	core_promoter_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001660	"" []	5741380	SOFA	SOFA	sequence	7	SO	sequence_feature	core_promoter_element
SO:0001661	\N	\N	"A TATA box core promoter of a gene transcribed by RNA polymerase II." [PMID:16858867]	SO:0001661	"A TATA box core promoter of a gene transcribed by RNA polymerase II." [PMID:16858867]	46527	\N	\N	sequence	0	SO	RNA_polymerase_II_TATA_box	RNA_polymerase_II_TATA_box
SO:0000174	SO:0001661	\N	"A conserved AT-rich septamer found about 25-bp before the start point of many eukaryotic RNA polymerase II transcript units; may be involved in positioning the enzyme for correct initiation; consensus=TATA(A|T)A(A|T)." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:16858867]	SO:0001661	"A TATA box core promoter of a gene transcribed by RNA polymerase II." [PMID:16858867]	491286	\N	\N	sequence	1	SO	TATA_box	RNA_polymerase_II_TATA_box
SO:0001669	SO:0001661	\N	"The minimal portion of the promoter required to properly initiate transcription in RNA polymerase II transcribed genes." [PMID:16858867]	SO:0001661	"A TATA box core promoter of a gene transcribed by RNA polymerase II." [PMID:16858867]	491287	\N	\N	sequence	1	SO	RNApol_II_core_promoter	RNA_polymerase_II_TATA_box
SO:0001660	SO:0000174	\N	"" []	SO:0001661	"A TATA box core promoter of a gene transcribed by RNA polymerase II." [PMID:16858867]	1073893	\N	\N	sequence	2	SO	core_promoter_element	RNA_polymerase_II_TATA_box
SO:0000170	SO:0001669	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	SO:0001661	"A TATA box core promoter of a gene transcribed by RNA polymerase II." [PMID:16858867]	1073894	\N	\N	sequence	2	SO	RNApol_II_promoter	RNA_polymerase_II_TATA_box
SO:0001659	SO:0001660	\N	"" []	SO:0001661	"A TATA box core promoter of a gene transcribed by RNA polymerase II." [PMID:16858867]	1905010	\N	\N	sequence	3	SO	promoter_element	RNA_polymerase_II_TATA_box
SO:0001203	SO:0000170	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001661	"A TATA box core promoter of a gene transcribed by RNA polymerase II." [PMID:16858867]	1905011	\N	\N	sequence	3	SO	RNA_polymerase_promoter	RNA_polymerase_II_TATA_box
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001661	"A TATA box core promoter of a gene transcribed by RNA polymerase II." [PMID:16858867]	2929436	\N	\N	sequence	4	SO	DNA_motif	RNA_polymerase_II_TATA_box
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001661	"A TATA box core promoter of a gene transcribed by RNA polymerase II." [PMID:16858867]	2929437	\N	SOFA	sequence	4	SO	promoter	RNA_polymerase_II_TATA_box
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001661	"A TATA box core promoter of a gene transcribed by RNA polymerase II." [PMID:16858867]	4002532	\N	SOFA	sequence	5	SO	nucleotide_motif	RNA_polymerase_II_TATA_box
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001661	"A TATA box core promoter of a gene transcribed by RNA polymerase II." [PMID:16858867]	4002533	SOFA	SOFA	sequence	5	SO	transcriptional_cis_regulatory_region	RNA_polymerase_II_TATA_box
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001661	"A TATA box core promoter of a gene transcribed by RNA polymerase II." [PMID:16858867]	4966790	SOFA	SOFA	sequence	6	SO	sequence_motif	RNA_polymerase_II_TATA_box
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001661	"A TATA box core promoter of a gene transcribed by RNA polymerase II." [PMID:16858867]	4966791	SOFA	SOFA	sequence	6	SO	transcription_regulatory_region	RNA_polymerase_II_TATA_box
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001661	"A TATA box core promoter of a gene transcribed by RNA polymerase II." [PMID:16858867]	5741381	SOFA	SOFA	sequence	7	SO	biological_region	RNA_polymerase_II_TATA_box
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001661	"A TATA box core promoter of a gene transcribed by RNA polymerase II." [PMID:16858867]	5741382	SOFA	SOFA	sequence	7	SO	regulatory_region	RNA_polymerase_II_TATA_box
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001661	"A TATA box core promoter of a gene transcribed by RNA polymerase II." [PMID:16858867]	6948094	SOFA	SOFA	sequence	10	SO	region	RNA_polymerase_II_TATA_box
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001661	"A TATA box core promoter of a gene transcribed by RNA polymerase II." [PMID:16858867]	6311138	SOFA	SOFA	sequence	8	SO	gene_member_region	RNA_polymerase_II_TATA_box
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001661	"A TATA box core promoter of a gene transcribed by RNA polymerase II." [PMID:16858867]	7085875	SOFA	SOFA	sequence	11	SO	sequence_feature	RNA_polymerase_II_TATA_box
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001661	"A TATA box core promoter of a gene transcribed by RNA polymerase II." [PMID:16858867]	6699383	SOFA	SOFA	sequence	9	SO	biological_region	RNA_polymerase_II_TATA_box
SO:0001662	\N	\N	"A TATA box core promoter of a gene transcribed by RNA polymerase III." [SO:ke]	SO:0001662	"A TATA box core promoter of a gene transcribed by RNA polymerase III." [SO:ke]	46528	\N	\N	sequence	0	SO	RNA_polymerase_III_TATA_box	RNA_polymerase_III_TATA_box
SO:0000171	SO:0001662	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase III binds, to begin transcription." [SO:ke]	SO:0001662	"A TATA box core promoter of a gene transcribed by RNA polymerase III." [SO:ke]	491288	\N	\N	sequence	1	SO	RNApol_III_promoter	RNA_polymerase_III_TATA_box
SO:0000174	SO:0001662	\N	"A conserved AT-rich septamer found about 25-bp before the start point of many eukaryotic RNA polymerase II transcript units; may be involved in positioning the enzyme for correct initiation; consensus=TATA(A|T)A(A|T)." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:16858867]	SO:0001662	"A TATA box core promoter of a gene transcribed by RNA polymerase III." [SO:ke]	491289	\N	\N	sequence	1	SO	TATA_box	RNA_polymerase_III_TATA_box
SO:0001203	SO:0000171	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001662	"A TATA box core promoter of a gene transcribed by RNA polymerase III." [SO:ke]	1073895	\N	\N	sequence	2	SO	RNA_polymerase_promoter	RNA_polymerase_III_TATA_box
SO:0001660	SO:0000174	\N	"" []	SO:0001662	"A TATA box core promoter of a gene transcribed by RNA polymerase III." [SO:ke]	1073896	\N	\N	sequence	2	SO	core_promoter_element	RNA_polymerase_III_TATA_box
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001662	"A TATA box core promoter of a gene transcribed by RNA polymerase III." [SO:ke]	1905012	\N	SOFA	sequence	3	SO	promoter	RNA_polymerase_III_TATA_box
SO:0001659	SO:0001660	\N	"" []	SO:0001662	"A TATA box core promoter of a gene transcribed by RNA polymerase III." [SO:ke]	1905013	\N	\N	sequence	3	SO	promoter_element	RNA_polymerase_III_TATA_box
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001662	"A TATA box core promoter of a gene transcribed by RNA polymerase III." [SO:ke]	2929438	SOFA	SOFA	sequence	4	SO	transcriptional_cis_regulatory_region	RNA_polymerase_III_TATA_box
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001662	"A TATA box core promoter of a gene transcribed by RNA polymerase III." [SO:ke]	2929439	\N	\N	sequence	4	SO	DNA_motif	RNA_polymerase_III_TATA_box
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001662	"A TATA box core promoter of a gene transcribed by RNA polymerase III." [SO:ke]	4002534	SOFA	SOFA	sequence	5	SO	transcription_regulatory_region	RNA_polymerase_III_TATA_box
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001662	"A TATA box core promoter of a gene transcribed by RNA polymerase III." [SO:ke]	4002535	\N	SOFA	sequence	5	SO	nucleotide_motif	RNA_polymerase_III_TATA_box
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001662	"A TATA box core promoter of a gene transcribed by RNA polymerase III." [SO:ke]	4966792	SOFA	SOFA	sequence	6	SO	regulatory_region	RNA_polymerase_III_TATA_box
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001662	"A TATA box core promoter of a gene transcribed by RNA polymerase III." [SO:ke]	4966793	SOFA	SOFA	sequence	6	SO	sequence_motif	RNA_polymerase_III_TATA_box
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001662	"A TATA box core promoter of a gene transcribed by RNA polymerase III." [SO:ke]	5741383	SOFA	SOFA	sequence	7	SO	gene_member_region	RNA_polymerase_III_TATA_box
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001662	"A TATA box core promoter of a gene transcribed by RNA polymerase III." [SO:ke]	5741384	SOFA	SOFA	sequence	7	SO	biological_region	RNA_polymerase_III_TATA_box
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001662	"A TATA box core promoter of a gene transcribed by RNA polymerase III." [SO:ke]	6311139	SOFA	SOFA	sequence	8	SO	biological_region	RNA_polymerase_III_TATA_box
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001662	"A TATA box core promoter of a gene transcribed by RNA polymerase III." [SO:ke]	6699384	SOFA	SOFA	sequence	9	SO	region	RNA_polymerase_III_TATA_box
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001662	"A TATA box core promoter of a gene transcribed by RNA polymerase III." [SO:ke]	6925095	SOFA	SOFA	sequence	10	SO	sequence_feature	RNA_polymerase_III_TATA_box
SO:0001663	\N	\N	"A core TRNA polymerase II promoter element with consensus (G/A)T(T/G/A)(T/A)(G/T)(T/G)(T/G)." [PMID:16858867]	SO:0001663	"A core TRNA polymerase II promoter element with consensus (G/A)T(T/G/A)(T/A)(G/T)(T/G)(T/G)." [PMID:16858867]	46529	\N	\N	sequence	0	SO	BREd_motif	BREd_motif
SO:0001660	SO:0001663	\N	"" []	SO:0001663	"A core TRNA polymerase II promoter element with consensus (G/A)T(T/G/A)(T/A)(G/T)(T/G)(T/G)." [PMID:16858867]	491290	\N	\N	sequence	1	SO	core_promoter_element	BREd_motif
SO:0001669	SO:0001663	\N	"The minimal portion of the promoter required to properly initiate transcription in RNA polymerase II transcribed genes." [PMID:16858867]	SO:0001663	"A core TRNA polymerase II promoter element with consensus (G/A)T(T/G/A)(T/A)(G/T)(T/G)(T/G)." [PMID:16858867]	491291	\N	\N	sequence	1	SO	RNApol_II_core_promoter	BREd_motif
SO:0001659	SO:0001660	\N	"" []	SO:0001663	"A core TRNA polymerase II promoter element with consensus (G/A)T(T/G/A)(T/A)(G/T)(T/G)(T/G)." [PMID:16858867]	1073897	\N	\N	sequence	2	SO	promoter_element	BREd_motif
SO:0000170	SO:0001669	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	SO:0001663	"A core TRNA polymerase II promoter element with consensus (G/A)T(T/G/A)(T/A)(G/T)(T/G)(T/G)." [PMID:16858867]	1073898	\N	\N	sequence	2	SO	RNApol_II_promoter	BREd_motif
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001663	"A core TRNA polymerase II promoter element with consensus (G/A)T(T/G/A)(T/A)(G/T)(T/G)(T/G)." [PMID:16858867]	1905014	\N	\N	sequence	3	SO	DNA_motif	BREd_motif
SO:0001203	SO:0000170	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001663	"A core TRNA polymerase II promoter element with consensus (G/A)T(T/G/A)(T/A)(G/T)(T/G)(T/G)." [PMID:16858867]	1905015	\N	\N	sequence	3	SO	RNA_polymerase_promoter	BREd_motif
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001663	"A core TRNA polymerase II promoter element with consensus (G/A)T(T/G/A)(T/A)(G/T)(T/G)(T/G)." [PMID:16858867]	2929440	\N	SOFA	sequence	4	SO	nucleotide_motif	BREd_motif
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001663	"A core TRNA polymerase II promoter element with consensus (G/A)T(T/G/A)(T/A)(G/T)(T/G)(T/G)." [PMID:16858867]	2929441	\N	SOFA	sequence	4	SO	promoter	BREd_motif
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001663	"A core TRNA polymerase II promoter element with consensus (G/A)T(T/G/A)(T/A)(G/T)(T/G)(T/G)." [PMID:16858867]	4002536	SOFA	SOFA	sequence	5	SO	sequence_motif	BREd_motif
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001663	"A core TRNA polymerase II promoter element with consensus (G/A)T(T/G/A)(T/A)(G/T)(T/G)(T/G)." [PMID:16858867]	4002537	SOFA	SOFA	sequence	5	SO	transcriptional_cis_regulatory_region	BREd_motif
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001663	"A core TRNA polymerase II promoter element with consensus (G/A)T(T/G/A)(T/A)(G/T)(T/G)(T/G)." [PMID:16858867]	4966794	SOFA	SOFA	sequence	6	SO	biological_region	BREd_motif
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001663	"A core TRNA polymerase II promoter element with consensus (G/A)T(T/G/A)(T/A)(G/T)(T/G)(T/G)." [PMID:16858867]	4966795	SOFA	SOFA	sequence	6	SO	transcription_regulatory_region	BREd_motif
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001663	"A core TRNA polymerase II promoter element with consensus (G/A)T(T/G/A)(T/A)(G/T)(T/G)(T/G)." [PMID:16858867]	6948095	SOFA	SOFA	sequence	10	SO	region	BREd_motif
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001663	"A core TRNA polymerase II promoter element with consensus (G/A)T(T/G/A)(T/A)(G/T)(T/G)(T/G)." [PMID:16858867]	5741386	SOFA	SOFA	sequence	7	SO	regulatory_region	BREd_motif
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001663	"A core TRNA polymerase II promoter element with consensus (G/A)T(T/G/A)(T/A)(G/T)(T/G)(T/G)." [PMID:16858867]	7068347	SOFA	SOFA	sequence	11	SO	sequence_feature	BREd_motif
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001663	"A core TRNA polymerase II promoter element with consensus (G/A)T(T/G/A)(T/A)(G/T)(T/G)(T/G)." [PMID:16858867]	6311142	SOFA	SOFA	sequence	8	SO	gene_member_region	BREd_motif
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001663	"A core TRNA polymerase II promoter element with consensus (G/A)T(T/G/A)(T/A)(G/T)(T/G)(T/G)." [PMID:16858867]	6699386	SOFA	SOFA	sequence	9	SO	biological_region	BREd_motif
SO:0001664	\N	\N	"A discontinuous core element of RNA polymerase II transcribed genes, situated downstream of the TSS. It is composed of three sub elements: SI, SII and SIII." [PMID:16858867]	SO:0001664	"A discontinuous core element of RNA polymerase II transcribed genes, situated downstream of the TSS. It is composed of three sub elements: SI, SII and SIII." [PMID:16858867]	46530	\N	\N	sequence	0	SO	DCE	DCE
SO:0001660	SO:0001664	\N	"" []	SO:0001664	"A discontinuous core element of RNA polymerase II transcribed genes, situated downstream of the TSS. It is composed of three sub elements: SI, SII and SIII." [PMID:16858867]	491292	\N	\N	sequence	1	SO	core_promoter_element	DCE
SO:0001669	SO:0001664	\N	"The minimal portion of the promoter required to properly initiate transcription in RNA polymerase II transcribed genes." [PMID:16858867]	SO:0001664	"A discontinuous core element of RNA polymerase II transcribed genes, situated downstream of the TSS. It is composed of three sub elements: SI, SII and SIII." [PMID:16858867]	491293	\N	\N	sequence	1	SO	RNApol_II_core_promoter	DCE
SO:0001659	SO:0001660	\N	"" []	SO:0001664	"A discontinuous core element of RNA polymerase II transcribed genes, situated downstream of the TSS. It is composed of three sub elements: SI, SII and SIII." [PMID:16858867]	1073899	\N	\N	sequence	2	SO	promoter_element	DCE
SO:0000170	SO:0001669	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	SO:0001664	"A discontinuous core element of RNA polymerase II transcribed genes, situated downstream of the TSS. It is composed of three sub elements: SI, SII and SIII." [PMID:16858867]	1073900	\N	\N	sequence	2	SO	RNApol_II_promoter	DCE
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001664	"A discontinuous core element of RNA polymerase II transcribed genes, situated downstream of the TSS. It is composed of three sub elements: SI, SII and SIII." [PMID:16858867]	1905016	\N	\N	sequence	3	SO	DNA_motif	DCE
SO:0001203	SO:0000170	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001664	"A discontinuous core element of RNA polymerase II transcribed genes, situated downstream of the TSS. It is composed of three sub elements: SI, SII and SIII." [PMID:16858867]	1905017	\N	\N	sequence	3	SO	RNA_polymerase_promoter	DCE
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001664	"A discontinuous core element of RNA polymerase II transcribed genes, situated downstream of the TSS. It is composed of three sub elements: SI, SII and SIII." [PMID:16858867]	2929442	\N	SOFA	sequence	4	SO	nucleotide_motif	DCE
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001664	"A discontinuous core element of RNA polymerase II transcribed genes, situated downstream of the TSS. It is composed of three sub elements: SI, SII and SIII." [PMID:16858867]	2929443	\N	SOFA	sequence	4	SO	promoter	DCE
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001664	"A discontinuous core element of RNA polymerase II transcribed genes, situated downstream of the TSS. It is composed of three sub elements: SI, SII and SIII." [PMID:16858867]	4002538	SOFA	SOFA	sequence	5	SO	sequence_motif	DCE
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001664	"A discontinuous core element of RNA polymerase II transcribed genes, situated downstream of the TSS. It is composed of three sub elements: SI, SII and SIII." [PMID:16858867]	4002539	SOFA	SOFA	sequence	5	SO	transcriptional_cis_regulatory_region	DCE
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001664	"A discontinuous core element of RNA polymerase II transcribed genes, situated downstream of the TSS. It is composed of three sub elements: SI, SII and SIII." [PMID:16858867]	4966796	SOFA	SOFA	sequence	6	SO	biological_region	DCE
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001664	"A discontinuous core element of RNA polymerase II transcribed genes, situated downstream of the TSS. It is composed of three sub elements: SI, SII and SIII." [PMID:16858867]	4966797	SOFA	SOFA	sequence	6	SO	transcription_regulatory_region	DCE
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001664	"A discontinuous core element of RNA polymerase II transcribed genes, situated downstream of the TSS. It is composed of three sub elements: SI, SII and SIII." [PMID:16858867]	6948096	SOFA	SOFA	sequence	10	SO	region	DCE
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001664	"A discontinuous core element of RNA polymerase II transcribed genes, situated downstream of the TSS. It is composed of three sub elements: SI, SII and SIII." [PMID:16858867]	5741388	SOFA	SOFA	sequence	7	SO	regulatory_region	DCE
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001664	"A discontinuous core element of RNA polymerase II transcribed genes, situated downstream of the TSS. It is composed of three sub elements: SI, SII and SIII." [PMID:16858867]	7068348	SOFA	SOFA	sequence	11	SO	sequence_feature	DCE
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001664	"A discontinuous core element of RNA polymerase II transcribed genes, situated downstream of the TSS. It is composed of three sub elements: SI, SII and SIII." [PMID:16858867]	6311144	SOFA	SOFA	sequence	8	SO	gene_member_region	DCE
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001664	"A discontinuous core element of RNA polymerase II transcribed genes, situated downstream of the TSS. It is composed of three sub elements: SI, SII and SIII." [PMID:16858867]	6699387	SOFA	SOFA	sequence	9	SO	biological_region	DCE
SO:0001665	\N	\N	"A sub element of the DCE core promoter element, with consensus sequence CTTC." [PMID:16858867, SO:ke]	SO:0001665	"A sub element of the DCE core promoter element, with consensus sequence CTTC." [PMID:16858867, SO:ke]	46531	\N	\N	sequence	0	SO	DCE_SI	DCE_SI
SO:0000713	SO:0001665	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001665	"A sub element of the DCE core promoter element, with consensus sequence CTTC." [PMID:16858867, SO:ke]	491294	\N	\N	sequence	1	SO	DNA_motif	DCE_SI
SO:0001664	SO:0001665	\N	"A discontinuous core element of RNA polymerase II transcribed genes, situated downstream of the TSS. It is composed of three sub elements: SI, SII and SIII." [PMID:16858867]	SO:0001665	"A sub element of the DCE core promoter element, with consensus sequence CTTC." [PMID:16858867, SO:ke]	491295	\N	\N	sequence	1	SO	DCE	DCE_SI
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001665	"A sub element of the DCE core promoter element, with consensus sequence CTTC." [PMID:16858867, SO:ke]	4002541	\N	SOFA	sequence	5	SO	nucleotide_motif	DCE_SI
SO:0001660	SO:0001664	\N	"" []	SO:0001665	"A sub element of the DCE core promoter element, with consensus sequence CTTC." [PMID:16858867, SO:ke]	1073902	\N	\N	sequence	2	SO	core_promoter_element	DCE_SI
SO:0001669	SO:0001664	\N	"The minimal portion of the promoter required to properly initiate transcription in RNA polymerase II transcribed genes." [PMID:16858867]	SO:0001665	"A sub element of the DCE core promoter element, with consensus sequence CTTC." [PMID:16858867, SO:ke]	1073903	\N	\N	sequence	2	SO	RNApol_II_core_promoter	DCE_SI
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001665	"A sub element of the DCE core promoter element, with consensus sequence CTTC." [PMID:16858867, SO:ke]	4066647	SOFA	SOFA	sequence	6	SO	sequence_motif	DCE_SI
SO:0001659	SO:0001660	\N	"" []	SO:0001665	"A sub element of the DCE core promoter element, with consensus sequence CTTC." [PMID:16858867, SO:ke]	1905019	\N	\N	sequence	3	SO	promoter_element	DCE_SI
SO:0000170	SO:0001669	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	SO:0001665	"A sub element of the DCE core promoter element, with consensus sequence CTTC." [PMID:16858867, SO:ke]	1905020	\N	\N	sequence	3	SO	RNApol_II_promoter	DCE_SI
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001665	"A sub element of the DCE core promoter element, with consensus sequence CTTC." [PMID:16858867, SO:ke]	5059247	SOFA	SOFA	sequence	7	SO	biological_region	DCE_SI
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001665	"A sub element of the DCE core promoter element, with consensus sequence CTTC." [PMID:16858867, SO:ke]	2929445	\N	\N	sequence	4	SO	DNA_motif	DCE_SI
SO:0001203	SO:0000170	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001665	"A sub element of the DCE core promoter element, with consensus sequence CTTC." [PMID:16858867, SO:ke]	2929446	\N	\N	sequence	4	SO	RNA_polymerase_promoter	DCE_SI
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001665	"A sub element of the DCE core promoter element, with consensus sequence CTTC." [PMID:16858867, SO:ke]	7105123	SOFA	SOFA	sequence	11	SO	region	DCE_SI
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001665	"A sub element of the DCE core promoter element, with consensus sequence CTTC." [PMID:16858867, SO:ke]	4002542	\N	SOFA	sequence	5	SO	promoter	DCE_SI
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001665	"A sub element of the DCE core promoter element, with consensus sequence CTTC." [PMID:16858867, SO:ke]	7173608	SOFA	SOFA	sequence	12	SO	sequence_feature	DCE_SI
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001665	"A sub element of the DCE core promoter element, with consensus sequence CTTC." [PMID:16858867, SO:ke]	4966799	SOFA	SOFA	sequence	6	SO	transcriptional_cis_regulatory_region	DCE_SI
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001665	"A sub element of the DCE core promoter element, with consensus sequence CTTC." [PMID:16858867, SO:ke]	5741389	SOFA	SOFA	sequence	7	SO	transcription_regulatory_region	DCE_SI
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001665	"A sub element of the DCE core promoter element, with consensus sequence CTTC." [PMID:16858867, SO:ke]	6311145	SOFA	SOFA	sequence	8	SO	regulatory_region	DCE_SI
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001665	"A sub element of the DCE core promoter element, with consensus sequence CTTC." [PMID:16858867, SO:ke]	6699388	SOFA	SOFA	sequence	9	SO	gene_member_region	DCE_SI
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001665	"A sub element of the DCE core promoter element, with consensus sequence CTTC." [PMID:16858867, SO:ke]	6948097	SOFA	SOFA	sequence	10	SO	biological_region	DCE_SI
SO:0001666	\N	\N	"A sub element of the DCE core promoter element with consensus sequence CTGT." [PMID:16858867, SO:ke]	SO:0001666	"A sub element of the DCE core promoter element with consensus sequence CTGT." [PMID:16858867, SO:ke]	46532	\N	\N	sequence	0	SO	DCE_SII	DCE_SII
SO:0000713	SO:0001666	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001666	"A sub element of the DCE core promoter element with consensus sequence CTGT." [PMID:16858867, SO:ke]	491296	\N	\N	sequence	1	SO	DNA_motif	DCE_SII
SO:0001664	SO:0001666	\N	"A discontinuous core element of RNA polymerase II transcribed genes, situated downstream of the TSS. It is composed of three sub elements: SI, SII and SIII." [PMID:16858867]	SO:0001666	"A sub element of the DCE core promoter element with consensus sequence CTGT." [PMID:16858867, SO:ke]	491297	\N	\N	sequence	1	SO	DCE	DCE_SII
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001666	"A sub element of the DCE core promoter element with consensus sequence CTGT." [PMID:16858867, SO:ke]	4002544	\N	SOFA	sequence	5	SO	nucleotide_motif	DCE_SII
SO:0001660	SO:0001664	\N	"" []	SO:0001666	"A sub element of the DCE core promoter element with consensus sequence CTGT." [PMID:16858867, SO:ke]	1073905	\N	\N	sequence	2	SO	core_promoter_element	DCE_SII
SO:0001669	SO:0001664	\N	"The minimal portion of the promoter required to properly initiate transcription in RNA polymerase II transcribed genes." [PMID:16858867]	SO:0001666	"A sub element of the DCE core promoter element with consensus sequence CTGT." [PMID:16858867, SO:ke]	1073906	\N	\N	sequence	2	SO	RNApol_II_core_promoter	DCE_SII
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001666	"A sub element of the DCE core promoter element with consensus sequence CTGT." [PMID:16858867, SO:ke]	4066648	SOFA	SOFA	sequence	6	SO	sequence_motif	DCE_SII
SO:0001659	SO:0001660	\N	"" []	SO:0001666	"A sub element of the DCE core promoter element with consensus sequence CTGT." [PMID:16858867, SO:ke]	1905022	\N	\N	sequence	3	SO	promoter_element	DCE_SII
SO:0000170	SO:0001669	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	SO:0001666	"A sub element of the DCE core promoter element with consensus sequence CTGT." [PMID:16858867, SO:ke]	1905023	\N	\N	sequence	3	SO	RNApol_II_promoter	DCE_SII
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001666	"A sub element of the DCE core promoter element with consensus sequence CTGT." [PMID:16858867, SO:ke]	5059248	SOFA	SOFA	sequence	7	SO	biological_region	DCE_SII
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001666	"A sub element of the DCE core promoter element with consensus sequence CTGT." [PMID:16858867, SO:ke]	2929448	\N	\N	sequence	4	SO	DNA_motif	DCE_SII
SO:0001203	SO:0000170	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001666	"A sub element of the DCE core promoter element with consensus sequence CTGT." [PMID:16858867, SO:ke]	2929449	\N	\N	sequence	4	SO	RNA_polymerase_promoter	DCE_SII
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001666	"A sub element of the DCE core promoter element with consensus sequence CTGT." [PMID:16858867, SO:ke]	7105124	SOFA	SOFA	sequence	11	SO	region	DCE_SII
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001666	"A sub element of the DCE core promoter element with consensus sequence CTGT." [PMID:16858867, SO:ke]	4002545	\N	SOFA	sequence	5	SO	promoter	DCE_SII
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001666	"A sub element of the DCE core promoter element with consensus sequence CTGT." [PMID:16858867, SO:ke]	7173609	SOFA	SOFA	sequence	12	SO	sequence_feature	DCE_SII
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001666	"A sub element of the DCE core promoter element with consensus sequence CTGT." [PMID:16858867, SO:ke]	4966801	SOFA	SOFA	sequence	6	SO	transcriptional_cis_regulatory_region	DCE_SII
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001666	"A sub element of the DCE core promoter element with consensus sequence CTGT." [PMID:16858867, SO:ke]	5741390	SOFA	SOFA	sequence	7	SO	transcription_regulatory_region	DCE_SII
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001666	"A sub element of the DCE core promoter element with consensus sequence CTGT." [PMID:16858867, SO:ke]	6311146	SOFA	SOFA	sequence	8	SO	regulatory_region	DCE_SII
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001666	"A sub element of the DCE core promoter element with consensus sequence CTGT." [PMID:16858867, SO:ke]	6699389	SOFA	SOFA	sequence	9	SO	gene_member_region	DCE_SII
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001666	"A sub element of the DCE core promoter element with consensus sequence CTGT." [PMID:16858867, SO:ke]	6948098	SOFA	SOFA	sequence	10	SO	biological_region	DCE_SII
SO:0001667	\N	\N	"A sub element of the DCE core promoter element with consensus sequence AGC." [PMID:16858867, SO:ke]	SO:0001667	"A sub element of the DCE core promoter element with consensus sequence AGC." [PMID:16858867, SO:ke]	46533	\N	\N	sequence	0	SO	DCE_SIII	DCE_SIII
SO:0000713	SO:0001667	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001667	"A sub element of the DCE core promoter element with consensus sequence AGC." [PMID:16858867, SO:ke]	491298	\N	\N	sequence	1	SO	DNA_motif	DCE_SIII
SO:0001664	SO:0001667	\N	"A discontinuous core element of RNA polymerase II transcribed genes, situated downstream of the TSS. It is composed of three sub elements: SI, SII and SIII." [PMID:16858867]	SO:0001667	"A sub element of the DCE core promoter element with consensus sequence AGC." [PMID:16858867, SO:ke]	491299	\N	\N	sequence	1	SO	DCE	DCE_SIII
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001667	"A sub element of the DCE core promoter element with consensus sequence AGC." [PMID:16858867, SO:ke]	4002547	\N	SOFA	sequence	5	SO	nucleotide_motif	DCE_SIII
SO:0001660	SO:0001664	\N	"" []	SO:0001667	"A sub element of the DCE core promoter element with consensus sequence AGC." [PMID:16858867, SO:ke]	1073908	\N	\N	sequence	2	SO	core_promoter_element	DCE_SIII
SO:0001669	SO:0001664	\N	"The minimal portion of the promoter required to properly initiate transcription in RNA polymerase II transcribed genes." [PMID:16858867]	SO:0001667	"A sub element of the DCE core promoter element with consensus sequence AGC." [PMID:16858867, SO:ke]	1073909	\N	\N	sequence	2	SO	RNApol_II_core_promoter	DCE_SIII
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001667	"A sub element of the DCE core promoter element with consensus sequence AGC." [PMID:16858867, SO:ke]	4066649	SOFA	SOFA	sequence	6	SO	sequence_motif	DCE_SIII
SO:0001659	SO:0001660	\N	"" []	SO:0001667	"A sub element of the DCE core promoter element with consensus sequence AGC." [PMID:16858867, SO:ke]	1905025	\N	\N	sequence	3	SO	promoter_element	DCE_SIII
SO:0000170	SO:0001669	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	SO:0001667	"A sub element of the DCE core promoter element with consensus sequence AGC." [PMID:16858867, SO:ke]	1905026	\N	\N	sequence	3	SO	RNApol_II_promoter	DCE_SIII
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001667	"A sub element of the DCE core promoter element with consensus sequence AGC." [PMID:16858867, SO:ke]	5059249	SOFA	SOFA	sequence	7	SO	biological_region	DCE_SIII
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001667	"A sub element of the DCE core promoter element with consensus sequence AGC." [PMID:16858867, SO:ke]	2929451	\N	\N	sequence	4	SO	DNA_motif	DCE_SIII
SO:0001203	SO:0000170	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001667	"A sub element of the DCE core promoter element with consensus sequence AGC." [PMID:16858867, SO:ke]	2929452	\N	\N	sequence	4	SO	RNA_polymerase_promoter	DCE_SIII
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001667	"A sub element of the DCE core promoter element with consensus sequence AGC." [PMID:16858867, SO:ke]	7105125	SOFA	SOFA	sequence	11	SO	region	DCE_SIII
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001667	"A sub element of the DCE core promoter element with consensus sequence AGC." [PMID:16858867, SO:ke]	4002548	\N	SOFA	sequence	5	SO	promoter	DCE_SIII
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001667	"A sub element of the DCE core promoter element with consensus sequence AGC." [PMID:16858867, SO:ke]	7173610	SOFA	SOFA	sequence	12	SO	sequence_feature	DCE_SIII
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001667	"A sub element of the DCE core promoter element with consensus sequence AGC." [PMID:16858867, SO:ke]	4966803	SOFA	SOFA	sequence	6	SO	transcriptional_cis_regulatory_region	DCE_SIII
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001667	"A sub element of the DCE core promoter element with consensus sequence AGC." [PMID:16858867, SO:ke]	5741391	SOFA	SOFA	sequence	7	SO	transcription_regulatory_region	DCE_SIII
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001667	"A sub element of the DCE core promoter element with consensus sequence AGC." [PMID:16858867, SO:ke]	6311147	SOFA	SOFA	sequence	8	SO	regulatory_region	DCE_SIII
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001667	"A sub element of the DCE core promoter element with consensus sequence AGC." [PMID:16858867, SO:ke]	6699390	SOFA	SOFA	sequence	9	SO	gene_member_region	DCE_SIII
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001667	"A sub element of the DCE core promoter element with consensus sequence AGC." [PMID:16858867, SO:ke]	6948099	SOFA	SOFA	sequence	10	SO	biological_region	DCE_SIII
SO:0001668	\N	\N	"DNA segment that ranges from about -250 to -40 relative to +1 of RNA transcription start site, where sequence specific DNA-binding transcription factors binds, such as Sp1, CTF (CCAAT-binding transcription factor), and CBF (CCAAT-box binding factor)." [PMID:12515390, PMID:9679020, SO:ml]	SO:0001668	"DNA segment that ranges from about -250 to -40 relative to +1 of RNA transcription start site, where sequence specific DNA-binding transcription factors binds, such as Sp1, CTF (CCAAT-binding transcription factor), and CBF (CCAAT-box binding factor)." [PMID:12515390, PMID:9679020, SO:ml]	46534	\N	\N	sequence	0	SO	proximal_promoter_element	proximal_promoter_element
SO:0001678	SO:0001668	\N	"A promoter element that is not part of the core promoter, but provides the promoter with a specific regulatory region." [PMID:12381659]	SO:0001668	"DNA segment that ranges from about -250 to -40 relative to +1 of RNA transcription start site, where sequence specific DNA-binding transcription factors binds, such as Sp1, CTF (CCAAT-binding transcription factor), and CBF (CCAAT-box binding factor)." [PMID:12515390, PMID:9679020, SO:ml]	491300	\N	\N	sequence	1	SO	regulatory_promoter_element	proximal_promoter_element
SO:0001659	SO:0001678	\N	"" []	SO:0001668	"DNA segment that ranges from about -250 to -40 relative to +1 of RNA transcription start site, where sequence specific DNA-binding transcription factors binds, such as Sp1, CTF (CCAAT-binding transcription factor), and CBF (CCAAT-box binding factor)." [PMID:12515390, PMID:9679020, SO:ml]	1073910	\N	\N	sequence	2	SO	promoter_element	proximal_promoter_element
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001668	"DNA segment that ranges from about -250 to -40 relative to +1 of RNA transcription start site, where sequence specific DNA-binding transcription factors binds, such as Sp1, CTF (CCAAT-binding transcription factor), and CBF (CCAAT-box binding factor)." [PMID:12515390, PMID:9679020, SO:ml]	1905027	\N	\N	sequence	3	SO	DNA_motif	proximal_promoter_element
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001668	"DNA segment that ranges from about -250 to -40 relative to +1 of RNA transcription start site, where sequence specific DNA-binding transcription factors binds, such as Sp1, CTF (CCAAT-binding transcription factor), and CBF (CCAAT-box binding factor)." [PMID:12515390, PMID:9679020, SO:ml]	2929453	\N	SOFA	sequence	4	SO	nucleotide_motif	proximal_promoter_element
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001668	"DNA segment that ranges from about -250 to -40 relative to +1 of RNA transcription start site, where sequence specific DNA-binding transcription factors binds, such as Sp1, CTF (CCAAT-binding transcription factor), and CBF (CCAAT-box binding factor)." [PMID:12515390, PMID:9679020, SO:ml]	4002549	SOFA	SOFA	sequence	5	SO	sequence_motif	proximal_promoter_element
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001668	"DNA segment that ranges from about -250 to -40 relative to +1 of RNA transcription start site, where sequence specific DNA-binding transcription factors binds, such as Sp1, CTF (CCAAT-binding transcription factor), and CBF (CCAAT-box binding factor)." [PMID:12515390, PMID:9679020, SO:ml]	4966804	SOFA	SOFA	sequence	6	SO	biological_region	proximal_promoter_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001668	"DNA segment that ranges from about -250 to -40 relative to +1 of RNA transcription start site, where sequence specific DNA-binding transcription factors binds, such as Sp1, CTF (CCAAT-binding transcription factor), and CBF (CCAAT-box binding factor)." [PMID:12515390, PMID:9679020, SO:ml]	5741392	SOFA	SOFA	sequence	7	SO	region	proximal_promoter_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001668	"DNA segment that ranges from about -250 to -40 relative to +1 of RNA transcription start site, where sequence specific DNA-binding transcription factors binds, such as Sp1, CTF (CCAAT-binding transcription factor), and CBF (CCAAT-box binding factor)." [PMID:12515390, PMID:9679020, SO:ml]	6311148	SOFA	SOFA	sequence	8	SO	sequence_feature	proximal_promoter_element
SO:0001669	\N	\N	"The minimal portion of the promoter required to properly initiate transcription in RNA polymerase II transcribed genes." [PMID:16858867]	SO:0001669	"The minimal portion of the promoter required to properly initiate transcription in RNA polymerase II transcribed genes." [PMID:16858867]	46535	\N	\N	sequence	0	SO	RNApol_II_core_promoter	RNApol_II_core_promoter
SO:0000170	SO:0001669	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase II binds, to begin transcription." [SO:ke]	SO:0001669	"The minimal portion of the promoter required to properly initiate transcription in RNA polymerase II transcribed genes." [PMID:16858867]	491301	\N	\N	sequence	1	SO	RNApol_II_promoter	RNApol_II_core_promoter
SO:0001203	SO:0000170	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001669	"The minimal portion of the promoter required to properly initiate transcription in RNA polymerase II transcribed genes." [PMID:16858867]	1073911	\N	\N	sequence	2	SO	RNA_polymerase_promoter	RNApol_II_core_promoter
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001669	"The minimal portion of the promoter required to properly initiate transcription in RNA polymerase II transcribed genes." [PMID:16858867]	1905028	\N	SOFA	sequence	3	SO	promoter	RNApol_II_core_promoter
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001669	"The minimal portion of the promoter required to properly initiate transcription in RNA polymerase II transcribed genes." [PMID:16858867]	2929454	SOFA	SOFA	sequence	4	SO	transcriptional_cis_regulatory_region	RNApol_II_core_promoter
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001669	"The minimal portion of the promoter required to properly initiate transcription in RNA polymerase II transcribed genes." [PMID:16858867]	4002550	SOFA	SOFA	sequence	5	SO	transcription_regulatory_region	RNApol_II_core_promoter
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001669	"The minimal portion of the promoter required to properly initiate transcription in RNA polymerase II transcribed genes." [PMID:16858867]	4966805	SOFA	SOFA	sequence	6	SO	regulatory_region	RNApol_II_core_promoter
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001669	"The minimal portion of the promoter required to properly initiate transcription in RNA polymerase II transcribed genes." [PMID:16858867]	5741393	SOFA	SOFA	sequence	7	SO	gene_member_region	RNApol_II_core_promoter
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001669	"The minimal portion of the promoter required to properly initiate transcription in RNA polymerase II transcribed genes." [PMID:16858867]	6311149	SOFA	SOFA	sequence	8	SO	biological_region	RNApol_II_core_promoter
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001669	"The minimal portion of the promoter required to properly initiate transcription in RNA polymerase II transcribed genes." [PMID:16858867]	6699391	SOFA	SOFA	sequence	9	SO	region	RNApol_II_core_promoter
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001669	"The minimal portion of the promoter required to properly initiate transcription in RNA polymerase II transcribed genes." [PMID:16858867]	6948100	SOFA	SOFA	sequence	10	SO	sequence_feature	RNApol_II_core_promoter
SO:0001670	\N	\N	"" []	SO:0001670	"" []	46536	\N	\N	sequence	0	SO	distal_promoter_element	distal_promoter_element
SO:0001678	SO:0001670	\N	"A promoter element that is not part of the core promoter, but provides the promoter with a specific regulatory region." [PMID:12381659]	SO:0001670	"" []	491302	\N	\N	sequence	1	SO	regulatory_promoter_element	distal_promoter_element
SO:0001659	SO:0001678	\N	"" []	SO:0001670	"" []	1073912	\N	\N	sequence	2	SO	promoter_element	distal_promoter_element
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001670	"" []	1905029	\N	\N	sequence	3	SO	DNA_motif	distal_promoter_element
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001670	"" []	2929455	\N	SOFA	sequence	4	SO	nucleotide_motif	distal_promoter_element
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001670	"" []	4002551	SOFA	SOFA	sequence	5	SO	sequence_motif	distal_promoter_element
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001670	"" []	4966806	SOFA	SOFA	sequence	6	SO	biological_region	distal_promoter_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001670	"" []	5741394	SOFA	SOFA	sequence	7	SO	region	distal_promoter_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001670	"" []	6311150	SOFA	SOFA	sequence	8	SO	sequence_feature	distal_promoter_element
SO:0001671	\N	\N	"" []	SO:0001671	"" []	46537	\N	\N	sequence	0	SO	bacterial_RNApol_promoter_sigma_70	bacterial_RNApol_promoter_sigma_70
SO:0000613	SO:0001671	\N	"A DNA sequence to which bacterial RNA polymerase binds, to begin transcription." [SO:ke]	SO:0001671	"" []	491303	\N	\N	sequence	1	SO	bacterial_RNApol_promoter	bacterial_RNApol_promoter_sigma_70
SO:0000752	SO:0000613	\N	"" []	SO:0001671	"" []	1073913	\N	SOFA	sequence	2	SO	gene_group_regulatory_region	bacterial_RNApol_promoter_sigma_70
SO:0001203	SO:0000613	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001671	"" []	1073914	\N	\N	sequence	2	SO	RNA_polymerase_promoter	bacterial_RNApol_promoter_sigma_70
SO:0001679	SO:0000752	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001671	"" []	1905030	SOFA	SOFA	sequence	3	SO	transcription_regulatory_region	bacterial_RNApol_promoter_sigma_70
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001671	"" []	1905031	\N	SOFA	sequence	3	SO	promoter	bacterial_RNApol_promoter_sigma_70
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001671	"" []	4966808	SOFA	SOFA	sequence	6	SO	regulatory_region	bacterial_RNApol_promoter_sigma_70
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001671	"" []	2929457	SOFA	SOFA	sequence	4	SO	transcriptional_cis_regulatory_region	bacterial_RNApol_promoter_sigma_70
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001671	"" []	5180746	SOFA	SOFA	sequence	7	SO	gene_member_region	bacterial_RNApol_promoter_sigma_70
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001671	"" []	4002553	SOFA	SOFA	sequence	5	SO	transcription_regulatory_region	bacterial_RNApol_promoter_sigma_70
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001671	"" []	5996452	SOFA	SOFA	sequence	8	SO	biological_region	bacterial_RNApol_promoter_sigma_70
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001671	"" []	6550287	SOFA	SOFA	sequence	9	SO	region	bacterial_RNApol_promoter_sigma_70
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001671	"" []	6888940	SOFA	SOFA	sequence	10	SO	sequence_feature	bacterial_RNApol_promoter_sigma_70
SO:0001672	\N	\N	"" []	SO:0001672	"" []	46538	\N	\N	sequence	0	SO	bacterial_RNApol_promoter_sigma54	bacterial_RNApol_promoter_sigma54
SO:0000613	SO:0001672	\N	"A DNA sequence to which bacterial RNA polymerase binds, to begin transcription." [SO:ke]	SO:0001672	"" []	491304	\N	\N	sequence	1	SO	bacterial_RNApol_promoter	bacterial_RNApol_promoter_sigma54
SO:0000752	SO:0000613	\N	"" []	SO:0001672	"" []	1073915	\N	SOFA	sequence	2	SO	gene_group_regulatory_region	bacterial_RNApol_promoter_sigma54
SO:0001203	SO:0000613	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001672	"" []	1073916	\N	\N	sequence	2	SO	RNA_polymerase_promoter	bacterial_RNApol_promoter_sigma54
SO:0001679	SO:0000752	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001672	"" []	1905032	SOFA	SOFA	sequence	3	SO	transcription_regulatory_region	bacterial_RNApol_promoter_sigma54
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001672	"" []	1905033	\N	SOFA	sequence	3	SO	promoter	bacterial_RNApol_promoter_sigma54
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001672	"" []	4966810	SOFA	SOFA	sequence	6	SO	regulatory_region	bacterial_RNApol_promoter_sigma54
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001672	"" []	2929459	SOFA	SOFA	sequence	4	SO	transcriptional_cis_regulatory_region	bacterial_RNApol_promoter_sigma54
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001672	"" []	5180747	SOFA	SOFA	sequence	7	SO	gene_member_region	bacterial_RNApol_promoter_sigma54
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001672	"" []	4002555	SOFA	SOFA	sequence	5	SO	transcription_regulatory_region	bacterial_RNApol_promoter_sigma54
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001672	"" []	5996453	SOFA	SOFA	sequence	8	SO	biological_region	bacterial_RNApol_promoter_sigma54
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001672	"" []	6550288	SOFA	SOFA	sequence	9	SO	region	bacterial_RNApol_promoter_sigma54
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001672	"" []	6888941	SOFA	SOFA	sequence	10	SO	sequence_feature	bacterial_RNApol_promoter_sigma54
SO:0001673	\N	\N	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	SO:0001673	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	46539	\N	\N	sequence	0	SO	minus_12_signal	minus_12_signal
SO:0000713	SO:0001673	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001673	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	491305	\N	\N	sequence	1	SO	DNA_motif	minus_12_signal
SO:0001672	SO:0001673	\N	"" []	SO:0001673	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	491306	\N	\N	sequence	1	SO	bacterial_RNApol_promoter_sigma54	minus_12_signal
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001673	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	1073917	\N	SOFA	sequence	2	SO	nucleotide_motif	minus_12_signal
SO:0000613	SO:0001672	\N	"A DNA sequence to which bacterial RNA polymerase binds, to begin transcription." [SO:ke]	SO:0001673	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	1073918	\N	\N	sequence	2	SO	bacterial_RNApol_promoter	minus_12_signal
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001673	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	1905034	SOFA	SOFA	sequence	3	SO	sequence_motif	minus_12_signal
SO:0000752	SO:0000613	\N	"" []	SO:0001673	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	1905035	\N	SOFA	sequence	3	SO	gene_group_regulatory_region	minus_12_signal
SO:0001203	SO:0000613	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001673	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	1905036	\N	\N	sequence	3	SO	RNA_polymerase_promoter	minus_12_signal
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001673	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	2929460	SOFA	SOFA	sequence	4	SO	biological_region	minus_12_signal
SO:0001679	SO:0000752	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001673	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	2929461	SOFA	SOFA	sequence	4	SO	transcription_regulatory_region	minus_12_signal
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001673	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	2929462	\N	SOFA	sequence	4	SO	promoter	minus_12_signal
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001673	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	6888942	SOFA	SOFA	sequence	10	SO	region	minus_12_signal
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001673	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	5741398	SOFA	SOFA	sequence	7	SO	regulatory_region	minus_12_signal
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001673	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	4002558	SOFA	SOFA	sequence	5	SO	transcriptional_cis_regulatory_region	minus_12_signal
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001673	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	7029780	SOFA	SOFA	sequence	11	SO	sequence_feature	minus_12_signal
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001673	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	5996454	SOFA	SOFA	sequence	8	SO	gene_member_region	minus_12_signal
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001673	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	4966813	SOFA	SOFA	sequence	6	SO	transcription_regulatory_region	minus_12_signal
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001673	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	6550289	SOFA	SOFA	sequence	9	SO	biological_region	minus_12_signal
SO:0001674	\N	\N	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	SO:0001674	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	46540	\N	\N	sequence	0	SO	minus_24_signal	minus_24_signal
SO:0000713	SO:0001674	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001674	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	491307	\N	\N	sequence	1	SO	DNA_motif	minus_24_signal
SO:0001672	SO:0001674	\N	"" []	SO:0001674	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	491308	\N	\N	sequence	1	SO	bacterial_RNApol_promoter_sigma54	minus_24_signal
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001674	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	1073919	\N	SOFA	sequence	2	SO	nucleotide_motif	minus_24_signal
SO:0000613	SO:0001672	\N	"A DNA sequence to which bacterial RNA polymerase binds, to begin transcription." [SO:ke]	SO:0001674	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	1073920	\N	\N	sequence	2	SO	bacterial_RNApol_promoter	minus_24_signal
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001674	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	1905037	SOFA	SOFA	sequence	3	SO	sequence_motif	minus_24_signal
SO:0000752	SO:0000613	\N	"" []	SO:0001674	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	1905038	\N	SOFA	sequence	3	SO	gene_group_regulatory_region	minus_24_signal
SO:0001203	SO:0000613	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001674	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	1905039	\N	\N	sequence	3	SO	RNA_polymerase_promoter	minus_24_signal
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001674	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	2929463	SOFA	SOFA	sequence	4	SO	biological_region	minus_24_signal
SO:0001679	SO:0000752	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001674	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	2929464	SOFA	SOFA	sequence	4	SO	transcription_regulatory_region	minus_24_signal
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001674	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	2929465	\N	SOFA	sequence	4	SO	promoter	minus_24_signal
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001674	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	6888943	SOFA	SOFA	sequence	10	SO	region	minus_24_signal
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001674	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	5741400	SOFA	SOFA	sequence	7	SO	regulatory_region	minus_24_signal
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001674	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	4002561	SOFA	SOFA	sequence	5	SO	transcriptional_cis_regulatory_region	minus_24_signal
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001674	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	7029781	SOFA	SOFA	sequence	11	SO	sequence_feature	minus_24_signal
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001674	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	5996455	SOFA	SOFA	sequence	8	SO	gene_member_region	minus_24_signal
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001674	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	4966816	SOFA	SOFA	sequence	6	SO	transcription_regulatory_region	minus_24_signal
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001674	"A conserved region about 12-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54." [PMID:18331472]	6550290	SOFA	SOFA	sequence	9	SO	biological_region	minus_24_signal
SO:0001675	\N	\N	"An A box within an RNA polymerase III type 1 promoter." [SO:ke]	SO:0001675	"An A box within an RNA polymerase III type 1 promoter." [SO:ke]	46541	\N	\N	sequence	0	SO	A_box_type_1	A_box_type_1
SO:0000617	SO:0001675	\N	"" []	SO:0001675	"An A box within an RNA polymerase III type 1 promoter." [SO:ke]	491309	\N	\N	sequence	1	SO	RNApol_III_promoter_type_1	A_box_type_1
SO:0000619	SO:0001675	\N	"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence TGGCnnAGTGG." [SO:ke]	SO:0001675	"An A box within an RNA polymerase III type 1 promoter." [SO:ke]	491310	\N	\N	sequence	1	SO	A_box	A_box_type_1
SO:0000171	SO:0000617	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase III binds, to begin transcription." [SO:ke]	SO:0001675	"An A box within an RNA polymerase III type 1 promoter." [SO:ke]	1073921	\N	\N	sequence	2	SO	RNApol_III_promoter	A_box_type_1
SO:0001660	SO:0000619	\N	"" []	SO:0001675	"An A box within an RNA polymerase III type 1 promoter." [SO:ke]	1073922	\N	\N	sequence	2	SO	core_promoter_element	A_box_type_1
SO:0001203	SO:0000171	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001675	"An A box within an RNA polymerase III type 1 promoter." [SO:ke]	1905040	\N	\N	sequence	3	SO	RNA_polymerase_promoter	A_box_type_1
SO:0001659	SO:0001660	\N	"" []	SO:0001675	"An A box within an RNA polymerase III type 1 promoter." [SO:ke]	1905041	\N	\N	sequence	3	SO	promoter_element	A_box_type_1
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001675	"An A box within an RNA polymerase III type 1 promoter." [SO:ke]	2929466	\N	SOFA	sequence	4	SO	promoter	A_box_type_1
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001675	"An A box within an RNA polymerase III type 1 promoter." [SO:ke]	2929467	\N	\N	sequence	4	SO	DNA_motif	A_box_type_1
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001675	"An A box within an RNA polymerase III type 1 promoter." [SO:ke]	4002562	SOFA	SOFA	sequence	5	SO	transcriptional_cis_regulatory_region	A_box_type_1
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001675	"An A box within an RNA polymerase III type 1 promoter." [SO:ke]	4002563	\N	SOFA	sequence	5	SO	nucleotide_motif	A_box_type_1
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001675	"An A box within an RNA polymerase III type 1 promoter." [SO:ke]	4966817	SOFA	SOFA	sequence	6	SO	transcription_regulatory_region	A_box_type_1
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001675	"An A box within an RNA polymerase III type 1 promoter." [SO:ke]	4966818	SOFA	SOFA	sequence	6	SO	sequence_motif	A_box_type_1
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001675	"An A box within an RNA polymerase III type 1 promoter." [SO:ke]	5741401	SOFA	SOFA	sequence	7	SO	regulatory_region	A_box_type_1
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001675	"An A box within an RNA polymerase III type 1 promoter." [SO:ke]	5741402	SOFA	SOFA	sequence	7	SO	biological_region	A_box_type_1
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001675	"An A box within an RNA polymerase III type 1 promoter." [SO:ke]	6311155	SOFA	SOFA	sequence	8	SO	gene_member_region	A_box_type_1
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001675	"An A box within an RNA polymerase III type 1 promoter." [SO:ke]	6948101	SOFA	SOFA	sequence	10	SO	region	A_box_type_1
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001675	"An A box within an RNA polymerase III type 1 promoter." [SO:ke]	6699392	SOFA	SOFA	sequence	9	SO	biological_region	A_box_type_1
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001675	"An A box within an RNA polymerase III type 1 promoter." [SO:ke]	7085876	SOFA	SOFA	sequence	11	SO	sequence_feature	A_box_type_1
SO:0001676	\N	\N	"An A box within an RNA polymerase III type 2 promoter." [SO:ke]	SO:0001676	"An A box within an RNA polymerase III type 2 promoter." [SO:ke]	46542	\N	\N	sequence	0	SO	A_box_type_2	A_box_type_2
SO:0000618	SO:0001676	\N	"" []	SO:0001676	"An A box within an RNA polymerase III type 2 promoter." [SO:ke]	491311	\N	\N	sequence	1	SO	RNApol_III_promoter_type_2	A_box_type_2
SO:0000619	SO:0001676	\N	"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence TGGCnnAGTGG." [SO:ke]	SO:0001676	"An A box within an RNA polymerase III type 2 promoter." [SO:ke]	491312	\N	\N	sequence	1	SO	A_box	A_box_type_2
SO:0000171	SO:0000618	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase III binds, to begin transcription." [SO:ke]	SO:0001676	"An A box within an RNA polymerase III type 2 promoter." [SO:ke]	1073923	\N	\N	sequence	2	SO	RNApol_III_promoter	A_box_type_2
SO:0001660	SO:0000619	\N	"" []	SO:0001676	"An A box within an RNA polymerase III type 2 promoter." [SO:ke]	1073924	\N	\N	sequence	2	SO	core_promoter_element	A_box_type_2
SO:0001203	SO:0000171	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001676	"An A box within an RNA polymerase III type 2 promoter." [SO:ke]	1905042	\N	\N	sequence	3	SO	RNA_polymerase_promoter	A_box_type_2
SO:0001659	SO:0001660	\N	"" []	SO:0001676	"An A box within an RNA polymerase III type 2 promoter." [SO:ke]	1905043	\N	\N	sequence	3	SO	promoter_element	A_box_type_2
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001676	"An A box within an RNA polymerase III type 2 promoter." [SO:ke]	2929468	\N	SOFA	sequence	4	SO	promoter	A_box_type_2
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001676	"An A box within an RNA polymerase III type 2 promoter." [SO:ke]	2929469	\N	\N	sequence	4	SO	DNA_motif	A_box_type_2
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001676	"An A box within an RNA polymerase III type 2 promoter." [SO:ke]	4002564	SOFA	SOFA	sequence	5	SO	transcriptional_cis_regulatory_region	A_box_type_2
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001676	"An A box within an RNA polymerase III type 2 promoter." [SO:ke]	4002565	\N	SOFA	sequence	5	SO	nucleotide_motif	A_box_type_2
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001676	"An A box within an RNA polymerase III type 2 promoter." [SO:ke]	4966819	SOFA	SOFA	sequence	6	SO	transcription_regulatory_region	A_box_type_2
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001676	"An A box within an RNA polymerase III type 2 promoter." [SO:ke]	4966820	SOFA	SOFA	sequence	6	SO	sequence_motif	A_box_type_2
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001676	"An A box within an RNA polymerase III type 2 promoter." [SO:ke]	5741403	SOFA	SOFA	sequence	7	SO	regulatory_region	A_box_type_2
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001676	"An A box within an RNA polymerase III type 2 promoter." [SO:ke]	5741404	SOFA	SOFA	sequence	7	SO	biological_region	A_box_type_2
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001676	"An A box within an RNA polymerase III type 2 promoter." [SO:ke]	6311157	SOFA	SOFA	sequence	8	SO	gene_member_region	A_box_type_2
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001676	"An A box within an RNA polymerase III type 2 promoter." [SO:ke]	6948102	SOFA	SOFA	sequence	10	SO	region	A_box_type_2
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001676	"An A box within an RNA polymerase III type 2 promoter." [SO:ke]	6699394	SOFA	SOFA	sequence	9	SO	biological_region	A_box_type_2
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001676	"An A box within an RNA polymerase III type 2 promoter." [SO:ke]	7085877	SOFA	SOFA	sequence	11	SO	sequence_feature	A_box_type_2
SO:0001677	\N	\N	"A core promoter region of RNA polymerase III type 1 promoters." [PMID:12381659]	SO:0001677	"A core promoter region of RNA polymerase III type 1 promoters." [PMID:12381659]	46543	\N	\N	sequence	0	SO	intermediate_element	intermediate_element
SO:0000617	SO:0001677	\N	"" []	SO:0001677	"A core promoter region of RNA polymerase III type 1 promoters." [PMID:12381659]	491313	\N	\N	sequence	1	SO	RNApol_III_promoter_type_1	intermediate_element
SO:0001660	SO:0001677	\N	"" []	SO:0001677	"A core promoter region of RNA polymerase III type 1 promoters." [PMID:12381659]	491314	\N	\N	sequence	1	SO	core_promoter_element	intermediate_element
SO:0000171	SO:0000617	\N	"A DNA sequence in eukaryotic DNA to which RNA polymerase III binds, to begin transcription." [SO:ke]	SO:0001677	"A core promoter region of RNA polymerase III type 1 promoters." [PMID:12381659]	1073925	\N	\N	sequence	2	SO	RNApol_III_promoter	intermediate_element
SO:0001659	SO:0001660	\N	"" []	SO:0001677	"A core promoter region of RNA polymerase III type 1 promoters." [PMID:12381659]	1073926	\N	\N	sequence	2	SO	promoter_element	intermediate_element
SO:0001203	SO:0000171	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001677	"A core promoter region of RNA polymerase III type 1 promoters." [PMID:12381659]	1905044	\N	\N	sequence	3	SO	RNA_polymerase_promoter	intermediate_element
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001677	"A core promoter region of RNA polymerase III type 1 promoters." [PMID:12381659]	1905045	\N	\N	sequence	3	SO	DNA_motif	intermediate_element
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001677	"A core promoter region of RNA polymerase III type 1 promoters." [PMID:12381659]	2929470	\N	SOFA	sequence	4	SO	promoter	intermediate_element
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001677	"A core promoter region of RNA polymerase III type 1 promoters." [PMID:12381659]	2929471	\N	SOFA	sequence	4	SO	nucleotide_motif	intermediate_element
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001677	"A core promoter region of RNA polymerase III type 1 promoters." [PMID:12381659]	4002566	SOFA	SOFA	sequence	5	SO	transcriptional_cis_regulatory_region	intermediate_element
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001677	"A core promoter region of RNA polymerase III type 1 promoters." [PMID:12381659]	4002567	SOFA	SOFA	sequence	5	SO	sequence_motif	intermediate_element
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001677	"A core promoter region of RNA polymerase III type 1 promoters." [PMID:12381659]	4966821	SOFA	SOFA	sequence	6	SO	transcription_regulatory_region	intermediate_element
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001677	"A core promoter region of RNA polymerase III type 1 promoters." [PMID:12381659]	4966822	SOFA	SOFA	sequence	6	SO	biological_region	intermediate_element
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001677	"A core promoter region of RNA polymerase III type 1 promoters." [PMID:12381659]	5741405	SOFA	SOFA	sequence	7	SO	regulatory_region	intermediate_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001677	"A core promoter region of RNA polymerase III type 1 promoters." [PMID:12381659]	6948103	SOFA	SOFA	sequence	10	SO	region	intermediate_element
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001677	"A core promoter region of RNA polymerase III type 1 promoters." [PMID:12381659]	6311159	SOFA	SOFA	sequence	8	SO	gene_member_region	intermediate_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001677	"A core promoter region of RNA polymerase III type 1 promoters." [PMID:12381659]	7068349	SOFA	SOFA	sequence	11	SO	sequence_feature	intermediate_element
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001677	"A core promoter region of RNA polymerase III type 1 promoters." [PMID:12381659]	6699396	SOFA	SOFA	sequence	9	SO	biological_region	intermediate_element
SO:0001678	\N	\N	"A promoter element that is not part of the core promoter, but provides the promoter with a specific regulatory region." [PMID:12381659]	SO:0001678	"A promoter element that is not part of the core promoter, but provides the promoter with a specific regulatory region." [PMID:12381659]	46544	\N	\N	sequence	0	SO	regulatory_promoter_element	regulatory_promoter_element
SO:0001659	SO:0001678	\N	"" []	SO:0001678	"A promoter element that is not part of the core promoter, but provides the promoter with a specific regulatory region." [PMID:12381659]	491315	\N	\N	sequence	1	SO	promoter_element	regulatory_promoter_element
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001678	"A promoter element that is not part of the core promoter, but provides the promoter with a specific regulatory region." [PMID:12381659]	1073927	\N	\N	sequence	2	SO	DNA_motif	regulatory_promoter_element
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001678	"A promoter element that is not part of the core promoter, but provides the promoter with a specific regulatory region." [PMID:12381659]	1905046	\N	SOFA	sequence	3	SO	nucleotide_motif	regulatory_promoter_element
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001678	"A promoter element that is not part of the core promoter, but provides the promoter with a specific regulatory region." [PMID:12381659]	2929472	SOFA	SOFA	sequence	4	SO	sequence_motif	regulatory_promoter_element
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001678	"A promoter element that is not part of the core promoter, but provides the promoter with a specific regulatory region." [PMID:12381659]	4002568	SOFA	SOFA	sequence	5	SO	biological_region	regulatory_promoter_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001678	"A promoter element that is not part of the core promoter, but provides the promoter with a specific regulatory region." [PMID:12381659]	4966823	SOFA	SOFA	sequence	6	SO	region	regulatory_promoter_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001678	"A promoter element that is not part of the core promoter, but provides the promoter with a specific regulatory region." [PMID:12381659]	5741407	SOFA	SOFA	sequence	7	SO	sequence_feature	regulatory_promoter_element
SO:0001679	\N	SOFA	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001679	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	46545	\N	SOFA	sequence	0	SO	transcription_regulatory_region	transcription_regulatory_region
SO:0005836	SO:0001679	SOFA	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001679	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	491316	SOFA	SOFA	sequence	1	SO	regulatory_region	transcription_regulatory_region
SO:0000831	SO:0005836	SOFA	"A region of a gene." [SO:ke]	SO:0001679	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	1073928	SOFA	SOFA	sequence	2	SO	gene_member_region	transcription_regulatory_region
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001679	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	1905047	SOFA	SOFA	sequence	3	SO	biological_region	transcription_regulatory_region
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001679	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	2929473	SOFA	SOFA	sequence	4	SO	region	transcription_regulatory_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001679	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	4002569	SOFA	SOFA	sequence	5	SO	sequence_feature	transcription_regulatory_region
SO:0001680	\N	\N	"A regulatory region that is involved in the control of the process of translation." [SO:ke]	SO:0001680	"A regulatory region that is involved in the control of the process of translation." [SO:ke]	46546	\N	\N	sequence	0	SO	translation_regulatory_region	translation_regulatory_region
SO:0005836	SO:0001680	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001680	"A regulatory region that is involved in the control of the process of translation." [SO:ke]	491317	\N	SOFA	sequence	1	SO	regulatory_region	translation_regulatory_region
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001680	"A regulatory region that is involved in the control of the process of translation." [SO:ke]	1073929	SOFA	SOFA	sequence	2	SO	gene_member_region	translation_regulatory_region
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001680	"A regulatory region that is involved in the control of the process of translation." [SO:ke]	1905048	SOFA	SOFA	sequence	3	SO	biological_region	translation_regulatory_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001680	"A regulatory region that is involved in the control of the process of translation." [SO:ke]	2929474	SOFA	SOFA	sequence	4	SO	region	translation_regulatory_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001680	"A regulatory region that is involved in the control of the process of translation." [SO:ke]	4002570	SOFA	SOFA	sequence	5	SO	sequence_feature	translation_regulatory_region
SO:0001681	\N	\N	"A regulatory region that is involved in the control of the process of recombination." [SO:ke]	SO:0001681	"A regulatory region that is involved in the control of the process of recombination." [SO:ke]	46547	\N	\N	sequence	0	SO	recombination_regulatory_region	recombination_regulatory_region
SO:0005836	SO:0001681	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001681	"A regulatory region that is involved in the control of the process of recombination." [SO:ke]	491318	\N	SOFA	sequence	1	SO	regulatory_region	recombination_regulatory_region
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001681	"A regulatory region that is involved in the control of the process of recombination." [SO:ke]	1073930	SOFA	SOFA	sequence	2	SO	gene_member_region	recombination_regulatory_region
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001681	"A regulatory region that is involved in the control of the process of recombination." [SO:ke]	1905049	SOFA	SOFA	sequence	3	SO	biological_region	recombination_regulatory_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001681	"A regulatory region that is involved in the control of the process of recombination." [SO:ke]	2929475	SOFA	SOFA	sequence	4	SO	region	recombination_regulatory_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001681	"A regulatory region that is involved in the control of the process of recombination." [SO:ke]	4002571	SOFA	SOFA	sequence	5	SO	sequence_feature	recombination_regulatory_region
SO:0001682	\N	\N	"A regulatory region that is involved in the control of the process of nucleotide replication." [SO:ke]	SO:0001682	"A regulatory region that is involved in the control of the process of nucleotide replication." [SO:ke]	46548	\N	\N	sequence	0	SO	replication_regulatory_region	replication_regulatory_region
SO:0005836	SO:0001682	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001682	"A regulatory region that is involved in the control of the process of nucleotide replication." [SO:ke]	491319	\N	SOFA	sequence	1	SO	regulatory_region	replication_regulatory_region
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001682	"A regulatory region that is involved in the control of the process of nucleotide replication." [SO:ke]	1073931	SOFA	SOFA	sequence	2	SO	gene_member_region	replication_regulatory_region
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001682	"A regulatory region that is involved in the control of the process of nucleotide replication." [SO:ke]	1905050	SOFA	SOFA	sequence	3	SO	biological_region	replication_regulatory_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001682	"A regulatory region that is involved in the control of the process of nucleotide replication." [SO:ke]	2929476	SOFA	SOFA	sequence	4	SO	region	replication_regulatory_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001682	"A regulatory region that is involved in the control of the process of nucleotide replication." [SO:ke]	4002572	SOFA	SOFA	sequence	5	SO	sequence_feature	replication_regulatory_region
SO:0001683	\N	SOFA	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001683	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	46549	\N	SOFA	sequence	0	SO	sequence_motif	sequence_motif
SO:0001411	SO:0001683	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001683	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	491320	SOFA	SOFA	sequence	1	SO	biological_region	sequence_motif
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001683	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	1073932	SOFA	SOFA	sequence	2	SO	region	sequence_motif
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001683	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	1905051	SOFA	SOFA	sequence	3	SO	sequence_feature	sequence_motif
SO:0001684	\N	\N	"An attribute of an experimentally derived feature." [SO:ke]	SO:0001684	"An attribute of an experimentally derived feature." [SO:ke]	46550	\N	\N	sequence	0	SO	experimental_feature_attribute	experimental_feature_attribute
SO:0000733	SO:0001684	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001684	"An attribute of an experimentally derived feature." [SO:ke]	491321	\N	\N	sequence	1	SO	feature_attribute	experimental_feature_attribute
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001684	"An attribute of an experimentally derived feature." [SO:ke]	1073933	\N	\N	sequence	2	SO	sequence_attribute	experimental_feature_attribute
SO:0001685	\N	\N	"The score of an experimentally derived feature such as a p-value." [SO:ke]	SO:0001685	"The score of an experimentally derived feature such as a p-value." [SO:ke]	46551	\N	\N	sequence	0	SO	score	score
SO:0001684	SO:0001685	\N	"An attribute of an experimentally derived feature." [SO:ke]	SO:0001685	"The score of an experimentally derived feature such as a p-value." [SO:ke]	491322	\N	\N	sequence	1	SO	experimental_feature_attribute	score
SO:0000733	SO:0001684	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001685	"The score of an experimentally derived feature such as a p-value." [SO:ke]	1073934	\N	\N	sequence	2	SO	feature_attribute	score
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001685	"The score of an experimentally derived feature such as a p-value." [SO:ke]	1905052	\N	\N	sequence	3	SO	sequence_attribute	score
SO:0001686	\N	\N	"An experimental feature attribute that defines the quality of the feature in a quantitative way, such as a phred quality score." [SO:ke]	SO:0001686	"An experimental feature attribute that defines the quality of the feature in a quantitative way, such as a phred quality score." [SO:ke]	46552	\N	\N	sequence	0	SO	quality_value	quality_value
SO:0001684	SO:0001686	\N	"An attribute of an experimentally derived feature." [SO:ke]	SO:0001686	"An experimental feature attribute that defines the quality of the feature in a quantitative way, such as a phred quality score." [SO:ke]	491323	\N	\N	sequence	1	SO	experimental_feature_attribute	quality_value
SO:0000733	SO:0001684	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001686	"An experimental feature attribute that defines the quality of the feature in a quantitative way, such as a phred quality score." [SO:ke]	1073935	\N	\N	sequence	2	SO	feature_attribute	quality_value
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001686	"An experimental feature attribute that defines the quality of the feature in a quantitative way, such as a phred quality score." [SO:ke]	1905053	\N	\N	sequence	3	SO	sequence_attribute	quality_value
SO:0001687	\N	\N	"The nucleotide region (usually a palindrome) that is recognized by a restriction enzyme. This may or may not be equal to the restriction enzyme binding site." [SO:ke]	SO:0001687	"The nucleotide region (usually a palindrome) that is recognized by a restriction enzyme. This may or may not be equal to the restriction enzyme binding site." [SO:ke]	46553	\N	\N	sequence	0	SO	restriction_enzyme_recognition_site	restriction_enzyme_recognition_site
SO:0001954	SO:0001687	\N	"A region related to restriction enzyme function." [SO:ke]	SO:0001687	"The nucleotide region (usually a palindrome) that is recognized by a restriction enzyme. This may or may not be equal to the restriction enzyme binding site." [SO:ke]	491324	\N	\N	sequence	1	SO	restriction_enzyme_region	restriction_enzyme_recognition_site
SO:0001411	SO:0001954	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001687	"The nucleotide region (usually a palindrome) that is recognized by a restriction enzyme. This may or may not be equal to the restriction enzyme binding site." [SO:ke]	1073936	\N	SOFA	sequence	2	SO	biological_region	restriction_enzyme_recognition_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001687	"The nucleotide region (usually a palindrome) that is recognized by a restriction enzyme. This may or may not be equal to the restriction enzyme binding site." [SO:ke]	1905054	SOFA	SOFA	sequence	3	SO	region	restriction_enzyme_recognition_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001687	"The nucleotide region (usually a palindrome) that is recognized by a restriction enzyme. This may or may not be equal to the restriction enzyme binding site." [SO:ke]	2929477	SOFA	SOFA	sequence	4	SO	sequence_feature	restriction_enzyme_recognition_site
SO:0001688	\N	\N	"The boundary at which a restriction enzyme breaks the nucleotide sequence." [SO:ke]	SO:0001688	"The boundary at which a restriction enzyme breaks the nucleotide sequence." [SO:ke]	46554	\N	\N	sequence	0	SO	restriction_enzyme_cleavage_junction	restriction_enzyme_cleavage_junction
SO:0000699	SO:0001688	\N	"A sequence_feature with an extent of zero." [SO:ke]	SO:0001688	"The boundary at which a restriction enzyme breaks the nucleotide sequence." [SO:ke]	491325	\N	SOFA	sequence	1	SO	junction	restriction_enzyme_cleavage_junction
SO:0000110	SO:0000699	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001688	"The boundary at which a restriction enzyme breaks the nucleotide sequence." [SO:ke]	1073937	SOFA	SOFA	sequence	2	SO	sequence_feature	restriction_enzyme_cleavage_junction
SO:0001689	\N	\N	"The restriction enzyme cleavage junction on the 5' strand of the nucleotide sequence." [SO:ke]	SO:0001689	"The restriction enzyme cleavage junction on the 5' strand of the nucleotide sequence." [SO:ke]	46555	\N	\N	sequence	0	SO	five_prime_restriction_enzyme_junction	five_prime_restriction_enzyme_junction
SO:0001692	SO:0001689	\N	"" []	SO:0001689	"The restriction enzyme cleavage junction on the 5' strand of the nucleotide sequence." [SO:ke]	491326	\N	\N	sequence	1	SO	sticky_end_restriction_enzyme_cleavage_site	five_prime_restriction_enzyme_junction
SO:0001694	SO:0001689	\N	"A restriction enzyme cleavage site whereby only one strand is cut." [SO:ke]	SO:0001689	"The restriction enzyme cleavage junction on the 5' strand of the nucleotide sequence." [SO:ke]	491327	\N	\N	sequence	1	SO	single_strand_restriction_enzyme_cleavage_site	five_prime_restriction_enzyme_junction
SO:0001687	SO:0001692	\N	"The nucleotide region (usually a palindrome) that is recognized by a restriction enzyme. This may or may not be equal to the restriction enzyme binding site." [SO:ke]	SO:0001689	"The restriction enzyme cleavage junction on the 5' strand of the nucleotide sequence." [SO:ke]	1073938	\N	\N	sequence	2	SO	restriction_enzyme_recognition_site	five_prime_restriction_enzyme_junction
SO:0001688	SO:0001694	\N	"The boundary at which a restriction enzyme breaks the nucleotide sequence." [SO:ke]	SO:0001689	"The restriction enzyme cleavage junction on the 5' strand of the nucleotide sequence." [SO:ke]	1073939	\N	\N	sequence	2	SO	restriction_enzyme_cleavage_junction	five_prime_restriction_enzyme_junction
SO:0001954	SO:0001687	\N	"A region related to restriction enzyme function." [SO:ke]	SO:0001689	"The restriction enzyme cleavage junction on the 5' strand of the nucleotide sequence." [SO:ke]	1905055	\N	\N	sequence	3	SO	restriction_enzyme_region	five_prime_restriction_enzyme_junction
SO:0000699	SO:0001688	\N	"A sequence_feature with an extent of zero." [SO:ke]	SO:0001689	"The restriction enzyme cleavage junction on the 5' strand of the nucleotide sequence." [SO:ke]	1905056	\N	SOFA	sequence	3	SO	junction	five_prime_restriction_enzyme_junction
SO:0001411	SO:0001954	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001689	"The restriction enzyme cleavage junction on the 5' strand of the nucleotide sequence." [SO:ke]	2929478	\N	SOFA	sequence	4	SO	biological_region	five_prime_restriction_enzyme_junction
SO:0000110	SO:0000699	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001689	"The restriction enzyme cleavage junction on the 5' strand of the nucleotide sequence." [SO:ke]	2929479	SOFA	SOFA	sequence	4	SO	sequence_feature	five_prime_restriction_enzyme_junction
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001689	"The restriction enzyme cleavage junction on the 5' strand of the nucleotide sequence." [SO:ke]	4002573	SOFA	SOFA	sequence	5	SO	region	five_prime_restriction_enzyme_junction
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001689	"The restriction enzyme cleavage junction on the 5' strand of the nucleotide sequence." [SO:ke]	4966824	SOFA	SOFA	sequence	6	SO	sequence_feature	five_prime_restriction_enzyme_junction
SO:0001690	\N	\N	"" []	SO:0001690	"" []	46556	\N	\N	sequence	0	SO	three_prime_restriction_enzyme_junction	three_prime_restriction_enzyme_junction
SO:0001692	SO:0001690	\N	"" []	SO:0001690	"" []	491328	\N	\N	sequence	1	SO	sticky_end_restriction_enzyme_cleavage_site	three_prime_restriction_enzyme_junction
SO:0001694	SO:0001690	\N	"A restriction enzyme cleavage site whereby only one strand is cut." [SO:ke]	SO:0001690	"" []	491329	\N	\N	sequence	1	SO	single_strand_restriction_enzyme_cleavage_site	three_prime_restriction_enzyme_junction
SO:0001687	SO:0001692	\N	"The nucleotide region (usually a palindrome) that is recognized by a restriction enzyme. This may or may not be equal to the restriction enzyme binding site." [SO:ke]	SO:0001690	"" []	1073940	\N	\N	sequence	2	SO	restriction_enzyme_recognition_site	three_prime_restriction_enzyme_junction
SO:0001688	SO:0001694	\N	"The boundary at which a restriction enzyme breaks the nucleotide sequence." [SO:ke]	SO:0001690	"" []	1073941	\N	\N	sequence	2	SO	restriction_enzyme_cleavage_junction	three_prime_restriction_enzyme_junction
SO:0001954	SO:0001687	\N	"A region related to restriction enzyme function." [SO:ke]	SO:0001690	"" []	1905057	\N	\N	sequence	3	SO	restriction_enzyme_region	three_prime_restriction_enzyme_junction
SO:0000699	SO:0001688	\N	"A sequence_feature with an extent of zero." [SO:ke]	SO:0001690	"" []	1905058	\N	SOFA	sequence	3	SO	junction	three_prime_restriction_enzyme_junction
SO:0001411	SO:0001954	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001690	"" []	2929480	\N	SOFA	sequence	4	SO	biological_region	three_prime_restriction_enzyme_junction
SO:0000110	SO:0000699	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001690	"" []	2929481	SOFA	SOFA	sequence	4	SO	sequence_feature	three_prime_restriction_enzyme_junction
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001690	"" []	4002574	SOFA	SOFA	sequence	5	SO	region	three_prime_restriction_enzyme_junction
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001690	"" []	4966825	SOFA	SOFA	sequence	6	SO	sequence_feature	three_prime_restriction_enzyme_junction
SO:0001691	\N	\N	"A restriction enzyme recognition site that, when cleaved, results in no overhangs." [SBOL:jgquinn, SO:ke]	SO:0001691	"A restriction enzyme recognition site that, when cleaved, results in no overhangs." [SBOL:jgquinn, SO:ke]	46557	\N	\N	sequence	0	SO	blunt_end_restriction_enzyme_cleavage_site	blunt_end_restriction_enzyme_cleavage_site
SO:0001687	SO:0001691	\N	"The nucleotide region (usually a palindrome) that is recognized by a restriction enzyme. This may or may not be equal to the restriction enzyme binding site." [SO:ke]	SO:0001691	"A restriction enzyme recognition site that, when cleaved, results in no overhangs." [SBOL:jgquinn, SO:ke]	491330	\N	\N	sequence	1	SO	restriction_enzyme_recognition_site	blunt_end_restriction_enzyme_cleavage_site
SO:0001954	SO:0001687	\N	"A region related to restriction enzyme function." [SO:ke]	SO:0001691	"A restriction enzyme recognition site that, when cleaved, results in no overhangs." [SBOL:jgquinn, SO:ke]	1073942	\N	\N	sequence	2	SO	restriction_enzyme_region	blunt_end_restriction_enzyme_cleavage_site
SO:0001411	SO:0001954	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001691	"A restriction enzyme recognition site that, when cleaved, results in no overhangs." [SBOL:jgquinn, SO:ke]	1905059	\N	SOFA	sequence	3	SO	biological_region	blunt_end_restriction_enzyme_cleavage_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001691	"A restriction enzyme recognition site that, when cleaved, results in no overhangs." [SBOL:jgquinn, SO:ke]	2929482	SOFA	SOFA	sequence	4	SO	region	blunt_end_restriction_enzyme_cleavage_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001691	"A restriction enzyme recognition site that, when cleaved, results in no overhangs." [SBOL:jgquinn, SO:ke]	4002575	SOFA	SOFA	sequence	5	SO	sequence_feature	blunt_end_restriction_enzyme_cleavage_site
SO:0001692	\N	\N	"" []	SO:0001692	"" []	46558	\N	\N	sequence	0	SO	sticky_end_restriction_enzyme_cleavage_site	sticky_end_restriction_enzyme_cleavage_site
SO:0001687	SO:0001692	\N	"The nucleotide region (usually a palindrome) that is recognized by a restriction enzyme. This may or may not be equal to the restriction enzyme binding site." [SO:ke]	SO:0001692	"" []	491331	\N	\N	sequence	1	SO	restriction_enzyme_recognition_site	sticky_end_restriction_enzyme_cleavage_site
SO:0001954	SO:0001687	\N	"A region related to restriction enzyme function." [SO:ke]	SO:0001692	"" []	1073943	\N	\N	sequence	2	SO	restriction_enzyme_region	sticky_end_restriction_enzyme_cleavage_site
SO:0001411	SO:0001954	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001692	"" []	1905060	\N	SOFA	sequence	3	SO	biological_region	sticky_end_restriction_enzyme_cleavage_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001692	"" []	2929483	SOFA	SOFA	sequence	4	SO	region	sticky_end_restriction_enzyme_cleavage_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001692	"" []	4002576	SOFA	SOFA	sequence	5	SO	sequence_feature	sticky_end_restriction_enzyme_cleavage_site
SO:0001693	\N	\N	"A restriction enzyme cleavage site where both strands are cut at the same position." [SO:ke]	SO:0001693	"A restriction enzyme cleavage site where both strands are cut at the same position." [SO:ke]	46559	\N	\N	sequence	0	SO	blunt_end_restriction_enzyme_cleavage_junction	blunt_end_restriction_enzyme_cleavage_junction
SO:0001688	SO:0001693	\N	"The boundary at which a restriction enzyme breaks the nucleotide sequence." [SO:ke]	SO:0001693	"A restriction enzyme cleavage site where both strands are cut at the same position." [SO:ke]	491332	\N	\N	sequence	1	SO	restriction_enzyme_cleavage_junction	blunt_end_restriction_enzyme_cleavage_junction
SO:0001691	SO:0001693	\N	"A restriction enzyme recognition site that, when cleaved, results in no overhangs." [SBOL:jgquinn, SO:ke]	SO:0001693	"A restriction enzyme cleavage site where both strands are cut at the same position." [SO:ke]	491333	\N	\N	sequence	1	SO	blunt_end_restriction_enzyme_cleavage_site	blunt_end_restriction_enzyme_cleavage_junction
SO:0000699	SO:0001688	\N	"A sequence_feature with an extent of zero." [SO:ke]	SO:0001693	"A restriction enzyme cleavage site where both strands are cut at the same position." [SO:ke]	1073944	\N	SOFA	sequence	2	SO	junction	blunt_end_restriction_enzyme_cleavage_junction
SO:0001687	SO:0001691	\N	"The nucleotide region (usually a palindrome) that is recognized by a restriction enzyme. This may or may not be equal to the restriction enzyme binding site." [SO:ke]	SO:0001693	"A restriction enzyme cleavage site where both strands are cut at the same position." [SO:ke]	1073945	\N	\N	sequence	2	SO	restriction_enzyme_recognition_site	blunt_end_restriction_enzyme_cleavage_junction
SO:0000110	SO:0000699	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001693	"A restriction enzyme cleavage site where both strands are cut at the same position." [SO:ke]	1905061	SOFA	SOFA	sequence	3	SO	sequence_feature	blunt_end_restriction_enzyme_cleavage_junction
SO:0001954	SO:0001687	\N	"A region related to restriction enzyme function." [SO:ke]	SO:0001693	"A restriction enzyme cleavage site where both strands are cut at the same position." [SO:ke]	1905062	\N	\N	sequence	3	SO	restriction_enzyme_region	blunt_end_restriction_enzyme_cleavage_junction
SO:0001411	SO:0001954	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001693	"A restriction enzyme cleavage site where both strands are cut at the same position." [SO:ke]	2929484	\N	SOFA	sequence	4	SO	biological_region	blunt_end_restriction_enzyme_cleavage_junction
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001693	"A restriction enzyme cleavage site where both strands are cut at the same position." [SO:ke]	4002577	SOFA	SOFA	sequence	5	SO	region	blunt_end_restriction_enzyme_cleavage_junction
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001693	"A restriction enzyme cleavage site where both strands are cut at the same position." [SO:ke]	4966826	SOFA	SOFA	sequence	6	SO	sequence_feature	blunt_end_restriction_enzyme_cleavage_junction
SO:0001694	\N	\N	"A restriction enzyme cleavage site whereby only one strand is cut." [SO:ke]	SO:0001694	"A restriction enzyme cleavage site whereby only one strand is cut." [SO:ke]	46560	\N	\N	sequence	0	SO	single_strand_restriction_enzyme_cleavage_site	single_strand_restriction_enzyme_cleavage_site
SO:0001688	SO:0001694	\N	"The boundary at which a restriction enzyme breaks the nucleotide sequence." [SO:ke]	SO:0001694	"A restriction enzyme cleavage site whereby only one strand is cut." [SO:ke]	491334	\N	\N	sequence	1	SO	restriction_enzyme_cleavage_junction	single_strand_restriction_enzyme_cleavage_site
SO:0000699	SO:0001688	\N	"A sequence_feature with an extent of zero." [SO:ke]	SO:0001694	"A restriction enzyme cleavage site whereby only one strand is cut." [SO:ke]	1073946	\N	SOFA	sequence	2	SO	junction	single_strand_restriction_enzyme_cleavage_site
SO:0000110	SO:0000699	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001694	"A restriction enzyme cleavage site whereby only one strand is cut." [SO:ke]	1905063	SOFA	SOFA	sequence	3	SO	sequence_feature	single_strand_restriction_enzyme_cleavage_site
SO:0001695	\N	\N	"A terminal region of DNA sequence where the end of the region is not blunt ended." [SO:ke]	SO:0001695	"A terminal region of DNA sequence where the end of the region is not blunt ended." [SO:ke]	46561	\N	\N	sequence	0	SO	restriction_enzyme_single_strand_overhang	restriction_enzyme_single_strand_overhang
SO:0001692	SO:0001695	\N	"" []	SO:0001695	"A terminal region of DNA sequence where the end of the region is not blunt ended." [SO:ke]	491335	\N	\N	sequence	1	SO	sticky_end_restriction_enzyme_cleavage_site	restriction_enzyme_single_strand_overhang
SO:0001954	SO:0001695	\N	"A region related to restriction enzyme function." [SO:ke]	SO:0001695	"A terminal region of DNA sequence where the end of the region is not blunt ended." [SO:ke]	491336	\N	\N	sequence	1	SO	restriction_enzyme_region	restriction_enzyme_single_strand_overhang
SO:0001687	SO:0001692	\N	"The nucleotide region (usually a palindrome) that is recognized by a restriction enzyme. This may or may not be equal to the restriction enzyme binding site." [SO:ke]	SO:0001695	"A terminal region of DNA sequence where the end of the region is not blunt ended." [SO:ke]	1073947	\N	\N	sequence	2	SO	restriction_enzyme_recognition_site	restriction_enzyme_single_strand_overhang
SO:0001411	SO:0001954	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001695	"A terminal region of DNA sequence where the end of the region is not blunt ended." [SO:ke]	2929485	\N	SOFA	sequence	4	SO	biological_region	restriction_enzyme_single_strand_overhang
SO:0001954	SO:0001687	\N	"A region related to restriction enzyme function." [SO:ke]	SO:0001695	"A terminal region of DNA sequence where the end of the region is not blunt ended." [SO:ke]	1905064	\N	\N	sequence	3	SO	restriction_enzyme_region	restriction_enzyme_single_strand_overhang
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001695	"A terminal region of DNA sequence where the end of the region is not blunt ended." [SO:ke]	2999126	SOFA	SOFA	sequence	5	SO	region	restriction_enzyme_single_strand_overhang
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001695	"A terminal region of DNA sequence where the end of the region is not blunt ended." [SO:ke]	4132335	SOFA	SOFA	sequence	6	SO	sequence_feature	restriction_enzyme_single_strand_overhang
SO:0001696	\N	\N	"A region that has been implicated in binding although the exact coordinates of binding may be unknown." [SO:ke]	SO:0001696	"A region that has been implicated in binding although the exact coordinates of binding may be unknown." [SO:ke]	46562	\N	\N	sequence	0	SO	experimentally_defined_binding_region	experimentally_defined_binding_region
SO:0001410	SO:0001696	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001696	"A region that has been implicated in binding although the exact coordinates of binding may be unknown." [SO:ke]	491337	\N	SOFA	sequence	1	SO	experimental_feature	experimentally_defined_binding_region
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001696	"A region that has been implicated in binding although the exact coordinates of binding may be unknown." [SO:ke]	1073949	SOFA	SOFA	sequence	2	SO	region	experimentally_defined_binding_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001696	"A region that has been implicated in binding although the exact coordinates of binding may be unknown." [SO:ke]	1905066	SOFA	SOFA	sequence	3	SO	sequence_feature	experimentally_defined_binding_region
SO:0001697	\N	\N	"A region of sequence identified by CHiP seq technology to contain a protein binding site." [SO:ke]	SO:0001697	"A region of sequence identified by CHiP seq technology to contain a protein binding site." [SO:ke]	46563	\N	\N	sequence	0	SO	ChIP_seq_region	ChIP_seq_region
SO:0001696	SO:0001697	\N	"A region that has been implicated in binding although the exact coordinates of binding may be unknown." [SO:ke]	SO:0001697	"A region of sequence identified by CHiP seq technology to contain a protein binding site." [SO:ke]	491338	\N	\N	sequence	1	SO	experimentally_defined_binding_region	ChIP_seq_region
SO:0001410	SO:0001696	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001697	"A region of sequence identified by CHiP seq technology to contain a protein binding site." [SO:ke]	1073950	\N	SOFA	sequence	2	SO	experimental_feature	ChIP_seq_region
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001697	"A region of sequence identified by CHiP seq technology to contain a protein binding site." [SO:ke]	1905067	SOFA	SOFA	sequence	3	SO	region	ChIP_seq_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001697	"A region of sequence identified by CHiP seq technology to contain a protein binding site." [SO:ke]	2929487	SOFA	SOFA	sequence	4	SO	sequence_feature	ChIP_seq_region
SO:0001698	\N	\N	"\\"A primer containing an SNV at the 3' end for accurate genotyping." [http://www.ncbi.nlm.nih.gov/pubmed/11252801]	SO:0001698	"\\"A primer containing an SNV at the 3' end for accurate genotyping." [http://www.ncbi.nlm.nih.gov/pubmed/11252801]	46564	\N	\N	sequence	0	SO	ASPE_primer	ASPE_primer
SO:0000112	SO:0001698	\N	"An oligo to which new deoxyribonucleotides can be added by DNA polymerase." [SO:ke]	SO:0001698	"\\"A primer containing an SNV at the 3' end for accurate genotyping." [http://www.ncbi.nlm.nih.gov/pubmed/11252801]	491339	\N	SOFA	sequence	1	SO	primer	ASPE_primer
SO:0000441	SO:0000112	\N	"A single stranded oligonucleotide." [SO:ke]	SO:0001698	"\\"A primer containing an SNV at the 3' end for accurate genotyping." [http://www.ncbi.nlm.nih.gov/pubmed/11252801]	1073951	SOFA	SOFA	sequence	2	SO	ss_oligo	ASPE_primer
SO:0000696	SO:0000441	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0001698	"\\"A primer containing an SNV at the 3' end for accurate genotyping." [http://www.ncbi.nlm.nih.gov/pubmed/11252801]	1905068	SOFA	SOFA	sequence	3	SO	oligo	ASPE_primer
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0001698	"\\"A primer containing an SNV at the 3' end for accurate genotyping." [http://www.ncbi.nlm.nih.gov/pubmed/11252801]	2929488	SOFA	SOFA	sequence	4	SO	reagent	ASPE_primer
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001698	"\\"A primer containing an SNV at the 3' end for accurate genotyping." [http://www.ncbi.nlm.nih.gov/pubmed/11252801]	4002578	SOFA	SOFA	sequence	5	SO	biomaterial_region	ASPE_primer
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001698	"\\"A primer containing an SNV at the 3' end for accurate genotyping." [http://www.ncbi.nlm.nih.gov/pubmed/11252801]	4966827	SOFA	SOFA	sequence	6	SO	region	ASPE_primer
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001698	"\\"A primer containing an SNV at the 3' end for accurate genotyping." [http://www.ncbi.nlm.nih.gov/pubmed/11252801]	5741408	SOFA	SOFA	sequence	7	SO	sequence_feature	ASPE_primer
SO:0001699	\N	\N	"A primer with one or more mismatches to the DNA template corresponding to a position within a restriction enzyme recognition site." [http://www.ncbi.nlm.nih.gov/pubmed/9628033]	SO:0001699	"A primer with one or more mismatches to the DNA template corresponding to a position within a restriction enzyme recognition site." [http://www.ncbi.nlm.nih.gov/pubmed/9628033]	46565	\N	\N	sequence	0	SO	dCAPS_primer	dCAPS_primer
SO:0000112	SO:0001699	\N	"An oligo to which new deoxyribonucleotides can be added by DNA polymerase." [SO:ke]	SO:0001699	"A primer with one or more mismatches to the DNA template corresponding to a position within a restriction enzyme recognition site." [http://www.ncbi.nlm.nih.gov/pubmed/9628033]	491340	\N	SOFA	sequence	1	SO	primer	dCAPS_primer
SO:0000441	SO:0000112	\N	"A single stranded oligonucleotide." [SO:ke]	SO:0001699	"A primer with one or more mismatches to the DNA template corresponding to a position within a restriction enzyme recognition site." [http://www.ncbi.nlm.nih.gov/pubmed/9628033]	1073952	SOFA	SOFA	sequence	2	SO	ss_oligo	dCAPS_primer
SO:0000696	SO:0000441	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0001699	"A primer with one or more mismatches to the DNA template corresponding to a position within a restriction enzyme recognition site." [http://www.ncbi.nlm.nih.gov/pubmed/9628033]	1905069	SOFA	SOFA	sequence	3	SO	oligo	dCAPS_primer
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0001699	"A primer with one or more mismatches to the DNA template corresponding to a position within a restriction enzyme recognition site." [http://www.ncbi.nlm.nih.gov/pubmed/9628033]	2929489	SOFA	SOFA	sequence	4	SO	reagent	dCAPS_primer
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001699	"A primer with one or more mismatches to the DNA template corresponding to a position within a restriction enzyme recognition site." [http://www.ncbi.nlm.nih.gov/pubmed/9628033]	4002579	SOFA	SOFA	sequence	5	SO	biomaterial_region	dCAPS_primer
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001699	"A primer with one or more mismatches to the DNA template corresponding to a position within a restriction enzyme recognition site." [http://www.ncbi.nlm.nih.gov/pubmed/9628033]	4966828	SOFA	SOFA	sequence	6	SO	region	dCAPS_primer
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001699	"A primer with one or more mismatches to the DNA template corresponding to a position within a restriction enzyme recognition site." [http://www.ncbi.nlm.nih.gov/pubmed/9628033]	5741409	SOFA	SOFA	sequence	7	SO	sequence_feature	dCAPS_primer
SO:0001700	\N	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001700	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	46566	\N	\N	sequence	0	SO	histone_modification	histone_modification
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001700	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	491341	\N	biosapiens	sequence	1	SO	post_translationally_modified_region	histone_modification
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001700	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	491342	\N	SOFA	sequence	1	SO	epigenetically_modified_region	histone_modification
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001700	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	1073953	biosapiens	biosapiens	sequence	2	SO	biochemical_region_of_peptide	histone_modification
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001700	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	1073954	SOFA	SOFA	sequence	2	SO	biological_region	histone_modification
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001700	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	1905070	biosapiens	biosapiens	sequence	3	SO	polypeptide_motif	histone_modification
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001700	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	6311161	SOFA	SOFA	sequence	8	SO	region	histone_modification
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001700	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	2929490	biosapiens	biosapiens	sequence	4	SO	polypeptide_conserved_region	histone_modification
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001700	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	6378766	SOFA	SOFA	sequence	9	SO	sequence_feature	histone_modification
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001700	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	4002580	biosapiens	biosapiens,SOFA	sequence	5	SO	polypeptide_region	histone_modification
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001700	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	4966829	biosapiens,SOFA	SOFA	sequence	6	SO	polypeptide	histone_modification
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001700	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	4966830	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	histone_modification
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001700	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	5741410	SOFA	SOFA	sequence	7	SO	biological_region	histone_modification
SO:0001701	\N	\N	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	SO:0001701	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	46567	\N	\N	sequence	0	SO	histone_methylation_site	histone_methylation_site
SO:0001700	SO:0001701	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001701	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	491343	\N	\N	sequence	1	SO	histone_modification	histone_methylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001701	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	1073955	\N	biosapiens	sequence	2	SO	post_translationally_modified_region	histone_methylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001701	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	1073956	\N	SOFA	sequence	2	SO	epigenetically_modified_region	histone_methylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001701	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	1905072	biosapiens	biosapiens	sequence	3	SO	biochemical_region_of_peptide	histone_methylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001701	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	1905073	SOFA	SOFA	sequence	3	SO	biological_region	histone_methylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001701	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	2929492	biosapiens	biosapiens	sequence	4	SO	polypeptide_motif	histone_methylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001701	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	6699397	SOFA	SOFA	sequence	9	SO	region	histone_methylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001701	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	4002581	biosapiens	biosapiens	sequence	5	SO	polypeptide_conserved_region	histone_methylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001701	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	6778562	SOFA	SOFA	sequence	10	SO	sequence_feature	histone_methylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001701	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	4966831	biosapiens	biosapiens,SOFA	sequence	6	SO	polypeptide_region	histone_methylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001701	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	5741412	biosapiens,SOFA	SOFA	sequence	7	SO	polypeptide	histone_methylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001701	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	5741413	biosapiens,SOFA	SOFA	sequence	7	SO	biological_region	histone_methylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001701	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	6311162	SOFA	SOFA	sequence	8	SO	biological_region	histone_methylation_site
SO:0001702	\N	\N	"A histone modification where the modification is the acylation of the residue." [SO:ke]	SO:0001702	"A histone modification where the modification is the acylation of the residue." [SO:ke]	46568	\N	\N	sequence	0	SO	histone_acetylation_site	histone_acetylation_site
SO:0001700	SO:0001702	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001702	"A histone modification where the modification is the acylation of the residue." [SO:ke]	491344	\N	\N	sequence	1	SO	histone_modification	histone_acetylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001702	"A histone modification where the modification is the acylation of the residue." [SO:ke]	1073957	\N	biosapiens	sequence	2	SO	post_translationally_modified_region	histone_acetylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001702	"A histone modification where the modification is the acylation of the residue." [SO:ke]	1073958	\N	SOFA	sequence	2	SO	epigenetically_modified_region	histone_acetylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001702	"A histone modification where the modification is the acylation of the residue." [SO:ke]	1905074	biosapiens	biosapiens	sequence	3	SO	biochemical_region_of_peptide	histone_acetylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001702	"A histone modification where the modification is the acylation of the residue." [SO:ke]	1905075	SOFA	SOFA	sequence	3	SO	biological_region	histone_acetylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001702	"A histone modification where the modification is the acylation of the residue." [SO:ke]	2929494	biosapiens	biosapiens	sequence	4	SO	polypeptide_motif	histone_acetylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001702	"A histone modification where the modification is the acylation of the residue." [SO:ke]	6699398	SOFA	SOFA	sequence	9	SO	region	histone_acetylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001702	"A histone modification where the modification is the acylation of the residue." [SO:ke]	4002583	biosapiens	biosapiens	sequence	5	SO	polypeptide_conserved_region	histone_acetylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001702	"A histone modification where the modification is the acylation of the residue." [SO:ke]	6778563	SOFA	SOFA	sequence	10	SO	sequence_feature	histone_acetylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001702	"A histone modification where the modification is the acylation of the residue." [SO:ke]	4966832	biosapiens	biosapiens,SOFA	sequence	6	SO	polypeptide_region	histone_acetylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001702	"A histone modification where the modification is the acylation of the residue." [SO:ke]	5741414	biosapiens,SOFA	SOFA	sequence	7	SO	polypeptide	histone_acetylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001702	"A histone modification where the modification is the acylation of the residue." [SO:ke]	5741415	biosapiens,SOFA	SOFA	sequence	7	SO	biological_region	histone_acetylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001702	"A histone modification where the modification is the acylation of the residue." [SO:ke]	6311164	SOFA	SOFA	sequence	8	SO	biological_region	histone_acetylation_site
SO:0001703	\N	\N	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	SO:0001703	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	46569	\N	\N	sequence	0	SO	H3K9_acetylation_site	H3K9_acetylation_site
SO:0001973	SO:0001703	\N	"A histone 3 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	SO:0001703	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	491345	\N	\N	sequence	1	SO	histone_3_acetylation_site	H3K9_acetylation_site
SO:0001702	SO:0001973	\N	"A histone modification where the modification is the acylation of the residue." [SO:ke]	SO:0001703	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	1073959	\N	\N	sequence	2	SO	histone_acetylation_site	H3K9_acetylation_site
SO:0001700	SO:0001702	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001703	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	1905076	\N	\N	sequence	3	SO	histone_modification	H3K9_acetylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001703	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	2929496	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H3K9_acetylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001703	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	2929497	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H3K9_acetylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001703	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	4002585	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H3K9_acetylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001703	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	4002586	SOFA	SOFA	sequence	5	SO	biological_region	H3K9_acetylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001703	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	4966833	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H3K9_acetylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001703	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	7105126	SOFA	SOFA	sequence	11	SO	region	H3K9_acetylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001703	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	5741416	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H3K9_acetylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001703	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	7181704	SOFA	SOFA	sequence	12	SO	sequence_feature	H3K9_acetylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001703	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	6311166	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H3K9_acetylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001703	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	6699399	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H3K9_acetylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001703	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	6699400	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H3K9_acetylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001703	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	6948104	SOFA	SOFA	sequence	10	SO	biological_region	H3K9_acetylation_site
SO:0001704	\N	\N	"A kind of histone modification site, whereby the 14th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	SO:0001704	"A kind of histone modification site, whereby the 14th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	46570	\N	\N	sequence	0	SO	H3K14_acetylation_site	H3K14_acetylation_site
SO:0001973	SO:0001704	\N	"A histone 3 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	SO:0001704	"A kind of histone modification site, whereby the 14th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	491346	\N	\N	sequence	1	SO	histone_3_acetylation_site	H3K14_acetylation_site
SO:0001702	SO:0001973	\N	"A histone modification where the modification is the acylation of the residue." [SO:ke]	SO:0001704	"A kind of histone modification site, whereby the 14th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	1073960	\N	\N	sequence	2	SO	histone_acetylation_site	H3K14_acetylation_site
SO:0001700	SO:0001702	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001704	"A kind of histone modification site, whereby the 14th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	1905077	\N	\N	sequence	3	SO	histone_modification	H3K14_acetylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001704	"A kind of histone modification site, whereby the 14th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	2929498	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H3K14_acetylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001704	"A kind of histone modification site, whereby the 14th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	2929499	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H3K14_acetylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001704	"A kind of histone modification site, whereby the 14th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	4002587	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H3K14_acetylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001704	"A kind of histone modification site, whereby the 14th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	4002588	SOFA	SOFA	sequence	5	SO	biological_region	H3K14_acetylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001704	"A kind of histone modification site, whereby the 14th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	4966835	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H3K14_acetylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001704	"A kind of histone modification site, whereby the 14th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	7105127	SOFA	SOFA	sequence	11	SO	region	H3K14_acetylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001704	"A kind of histone modification site, whereby the 14th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	5741418	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H3K14_acetylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001704	"A kind of histone modification site, whereby the 14th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	7181705	SOFA	SOFA	sequence	12	SO	sequence_feature	H3K14_acetylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001704	"A kind of histone modification site, whereby the 14th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	6311167	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H3K14_acetylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001704	"A kind of histone modification site, whereby the 14th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	6699401	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H3K14_acetylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001704	"A kind of histone modification site, whereby the 14th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	6699402	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H3K14_acetylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001704	"A kind of histone modification site, whereby the 14th residue (a lysine), from the start of the H3 histone protein is acetylated." [http://en.wikipedia.org/wiki/Histone]	6948106	SOFA	SOFA	sequence	10	SO	biological_region	H3K14_acetylation_site
SO:0001705	\N	\N	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	SO:0001705	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	46571	\N	\N	sequence	0	SO	H3K4_monomethylation_site	H3K4_monomethylation_site
SO:0001734	SO:0001705	\N	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is methylated." [SO:ke]	SO:0001705	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	491347	\N	\N	sequence	1	SO	H3K4_methylation_site	H3K4_monomethylation_site
SO:0001701	SO:0001734	\N	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	SO:0001705	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	1073961	\N	\N	sequence	2	SO	histone_methylation_site	H3K4_monomethylation_site
SO:0001700	SO:0001701	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001705	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	1905078	\N	\N	sequence	3	SO	histone_modification	H3K4_monomethylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001705	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	2929500	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H3K4_monomethylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001705	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	2929501	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H3K4_monomethylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001705	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	4002589	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H3K4_monomethylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001705	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	4002590	SOFA	SOFA	sequence	5	SO	biological_region	H3K4_monomethylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001705	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	4966837	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H3K4_monomethylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001705	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	7105128	SOFA	SOFA	sequence	11	SO	region	H3K4_monomethylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001705	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	5741420	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H3K4_monomethylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001705	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	7181706	SOFA	SOFA	sequence	12	SO	sequence_feature	H3K4_monomethylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001705	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	6311168	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H3K4_monomethylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001705	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	6699403	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H3K4_monomethylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001705	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	6699404	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H3K4_monomethylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001705	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	6948108	SOFA	SOFA	sequence	10	SO	biological_region	H3K4_monomethylation_site
SO:0001706	\N	\N	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	SO:0001706	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	46572	\N	\N	sequence	0	SO	H3K4_trimethylation	H3K4_trimethylation
SO:0001734	SO:0001706	\N	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is methylated." [SO:ke]	SO:0001706	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	491348	\N	\N	sequence	1	SO	H3K4_methylation_site	H3K4_trimethylation
SO:0001701	SO:0001734	\N	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	SO:0001706	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	1073962	\N	\N	sequence	2	SO	histone_methylation_site	H3K4_trimethylation
SO:0001700	SO:0001701	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001706	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	1905079	\N	\N	sequence	3	SO	histone_modification	H3K4_trimethylation
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001706	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	2929502	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H3K4_trimethylation
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001706	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	2929503	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H3K4_trimethylation
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001706	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	4002591	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H3K4_trimethylation
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001706	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	4002592	SOFA	SOFA	sequence	5	SO	biological_region	H3K4_trimethylation
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001706	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	4966839	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H3K4_trimethylation
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001706	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	7105129	SOFA	SOFA	sequence	11	SO	region	H3K4_trimethylation
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001706	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	5741422	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H3K4_trimethylation
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001706	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	7181707	SOFA	SOFA	sequence	12	SO	sequence_feature	H3K4_trimethylation
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001706	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	6311169	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H3K4_trimethylation
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001706	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	6699405	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H3K4_trimethylation
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001706	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	6699406	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H3K4_trimethylation
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001706	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	6948110	SOFA	SOFA	sequence	10	SO	biological_region	H3K4_trimethylation
SO:0001707	\N	\N	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	SO:0001707	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	46573	\N	\N	sequence	0	SO	H3K9_trimethylation_site	H3K9_trimethylation_site
SO:0001736	SO:0001707	\N	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	SO:0001707	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	491349	\N	\N	sequence	1	SO	H3K9_methylation_site	H3K9_trimethylation_site
SO:0001701	SO:0001736	\N	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	SO:0001707	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	1073963	\N	\N	sequence	2	SO	histone_methylation_site	H3K9_trimethylation_site
SO:0001700	SO:0001701	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001707	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	1905080	\N	\N	sequence	3	SO	histone_modification	H3K9_trimethylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001707	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	2929504	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H3K9_trimethylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001707	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	2929505	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H3K9_trimethylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001707	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	4002593	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H3K9_trimethylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001707	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	4002594	SOFA	SOFA	sequence	5	SO	biological_region	H3K9_trimethylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001707	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	4966841	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H3K9_trimethylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001707	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	7105130	SOFA	SOFA	sequence	11	SO	region	H3K9_trimethylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001707	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	5741424	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H3K9_trimethylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001707	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	7181708	SOFA	SOFA	sequence	12	SO	sequence_feature	H3K9_trimethylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001707	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	6311170	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H3K9_trimethylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001707	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	6699407	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H3K9_trimethylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001707	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	6699408	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H3K9_trimethylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001707	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	6948112	SOFA	SOFA	sequence	10	SO	biological_region	H3K9_trimethylation_site
SO:0001708	\N	\N	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	SO:0001708	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	46574	\N	\N	sequence	0	SO	H3K27_monomethylation_site	H3K27_monomethylation_site
SO:0001732	SO:0001708	\N	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	SO:0001708	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	491350	\N	\N	sequence	1	SO	H3K27_methylation_site	H3K27_monomethylation_site
SO:0001701	SO:0001732	\N	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	SO:0001708	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	1073964	\N	\N	sequence	2	SO	histone_methylation_site	H3K27_monomethylation_site
SO:0001700	SO:0001701	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001708	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	1905081	\N	\N	sequence	3	SO	histone_modification	H3K27_monomethylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001708	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	2929506	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H3K27_monomethylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001708	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	2929507	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H3K27_monomethylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001708	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	4002595	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H3K27_monomethylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001708	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	4002596	SOFA	SOFA	sequence	5	SO	biological_region	H3K27_monomethylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001708	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	4966843	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H3K27_monomethylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001708	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	7105131	SOFA	SOFA	sequence	11	SO	region	H3K27_monomethylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001708	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	5741426	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H3K27_monomethylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001708	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	7181709	SOFA	SOFA	sequence	12	SO	sequence_feature	H3K27_monomethylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001708	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	6311171	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H3K27_monomethylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001708	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	6699409	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H3K27_monomethylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001708	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	6699410	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H3K27_monomethylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001708	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	6948114	SOFA	SOFA	sequence	10	SO	biological_region	H3K27_monomethylation_site
SO:0001709	\N	\N	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	SO:0001709	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	46575	\N	\N	sequence	0	SO	H3K27_trimethylation_site	H3K27_trimethylation_site
SO:0001732	SO:0001709	\N	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	SO:0001709	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	491351	\N	\N	sequence	1	SO	H3K27_methylation_site	H3K27_trimethylation_site
SO:0001701	SO:0001732	\N	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	SO:0001709	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	1073965	\N	\N	sequence	2	SO	histone_methylation_site	H3K27_trimethylation_site
SO:0001700	SO:0001701	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001709	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	1905082	\N	\N	sequence	3	SO	histone_modification	H3K27_trimethylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001709	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	2929508	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H3K27_trimethylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001709	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	2929509	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H3K27_trimethylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001709	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	4002597	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H3K27_trimethylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001709	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	4002598	SOFA	SOFA	sequence	5	SO	biological_region	H3K27_trimethylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001709	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	4966845	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H3K27_trimethylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001709	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	7105132	SOFA	SOFA	sequence	11	SO	region	H3K27_trimethylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001709	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	5741428	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H3K27_trimethylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001709	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	7181710	SOFA	SOFA	sequence	12	SO	sequence_feature	H3K27_trimethylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001709	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	6311172	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H3K27_trimethylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001709	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	6699411	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H3K27_trimethylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001709	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	6699412	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H3K27_trimethylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001709	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	6948116	SOFA	SOFA	sequence	10	SO	biological_region	H3K27_trimethylation_site
SO:0001710	\N	\N	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is mono- methylated." [http://en.wikipedia.org/wiki/Histone]	SO:0001710	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is mono- methylated." [http://en.wikipedia.org/wiki/Histone]	46576	\N	\N	sequence	0	SO	H3K79_monomethylation_site	H3K79_monomethylation_site
SO:0001735	SO:0001710	\N	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	SO:0001710	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is mono- methylated." [http://en.wikipedia.org/wiki/Histone]	491352	\N	\N	sequence	1	SO	H3K79_methylation_site	H3K79_monomethylation_site
SO:0001701	SO:0001735	\N	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	SO:0001710	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is mono- methylated." [http://en.wikipedia.org/wiki/Histone]	1073966	\N	\N	sequence	2	SO	histone_methylation_site	H3K79_monomethylation_site
SO:0001700	SO:0001701	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001710	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is mono- methylated." [http://en.wikipedia.org/wiki/Histone]	1905083	\N	\N	sequence	3	SO	histone_modification	H3K79_monomethylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001710	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is mono- methylated." [http://en.wikipedia.org/wiki/Histone]	2929510	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H3K79_monomethylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001710	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is mono- methylated." [http://en.wikipedia.org/wiki/Histone]	2929511	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H3K79_monomethylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001710	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is mono- methylated." [http://en.wikipedia.org/wiki/Histone]	4002599	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H3K79_monomethylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001710	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is mono- methylated." [http://en.wikipedia.org/wiki/Histone]	4002600	SOFA	SOFA	sequence	5	SO	biological_region	H3K79_monomethylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001710	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is mono- methylated." [http://en.wikipedia.org/wiki/Histone]	4966847	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H3K79_monomethylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001710	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is mono- methylated." [http://en.wikipedia.org/wiki/Histone]	7105133	SOFA	SOFA	sequence	11	SO	region	H3K79_monomethylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001710	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is mono- methylated." [http://en.wikipedia.org/wiki/Histone]	5741430	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H3K79_monomethylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001710	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is mono- methylated." [http://en.wikipedia.org/wiki/Histone]	7181711	SOFA	SOFA	sequence	12	SO	sequence_feature	H3K79_monomethylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001710	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is mono- methylated." [http://en.wikipedia.org/wiki/Histone]	6311173	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H3K79_monomethylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001710	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is mono- methylated." [http://en.wikipedia.org/wiki/Histone]	6699413	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H3K79_monomethylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001710	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is mono- methylated." [http://en.wikipedia.org/wiki/Histone]	6699414	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H3K79_monomethylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001710	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is mono- methylated." [http://en.wikipedia.org/wiki/Histone]	6948118	SOFA	SOFA	sequence	10	SO	biological_region	H3K79_monomethylation_site
SO:0001711	\N	\N	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is di-methylated." [http://en.wikipedia.org/wiki/Histone]	SO:0001711	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is di-methylated." [http://en.wikipedia.org/wiki/Histone]	46577	\N	\N	sequence	0	SO	H3K79_dimethylation_site	H3K79_dimethylation_site
SO:0001735	SO:0001711	\N	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	SO:0001711	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is di-methylated." [http://en.wikipedia.org/wiki/Histone]	491353	\N	\N	sequence	1	SO	H3K79_methylation_site	H3K79_dimethylation_site
SO:0001701	SO:0001735	\N	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	SO:0001711	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is di-methylated." [http://en.wikipedia.org/wiki/Histone]	1073967	\N	\N	sequence	2	SO	histone_methylation_site	H3K79_dimethylation_site
SO:0001700	SO:0001701	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001711	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is di-methylated." [http://en.wikipedia.org/wiki/Histone]	1905084	\N	\N	sequence	3	SO	histone_modification	H3K79_dimethylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001711	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is di-methylated." [http://en.wikipedia.org/wiki/Histone]	2929512	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H3K79_dimethylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001711	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is di-methylated." [http://en.wikipedia.org/wiki/Histone]	2929513	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H3K79_dimethylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001711	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is di-methylated." [http://en.wikipedia.org/wiki/Histone]	4002601	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H3K79_dimethylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001711	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is di-methylated." [http://en.wikipedia.org/wiki/Histone]	4002602	SOFA	SOFA	sequence	5	SO	biological_region	H3K79_dimethylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001711	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is di-methylated." [http://en.wikipedia.org/wiki/Histone]	4966849	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H3K79_dimethylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001711	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is di-methylated." [http://en.wikipedia.org/wiki/Histone]	7105134	SOFA	SOFA	sequence	11	SO	region	H3K79_dimethylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001711	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is di-methylated." [http://en.wikipedia.org/wiki/Histone]	5741432	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H3K79_dimethylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001711	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is di-methylated." [http://en.wikipedia.org/wiki/Histone]	7181712	SOFA	SOFA	sequence	12	SO	sequence_feature	H3K79_dimethylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001711	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is di-methylated." [http://en.wikipedia.org/wiki/Histone]	6311174	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H3K79_dimethylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001711	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is di-methylated." [http://en.wikipedia.org/wiki/Histone]	6699415	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H3K79_dimethylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001711	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is di-methylated." [http://en.wikipedia.org/wiki/Histone]	6699416	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H3K79_dimethylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001711	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is di-methylated." [http://en.wikipedia.org/wiki/Histone]	6948120	SOFA	SOFA	sequence	10	SO	biological_region	H3K79_dimethylation_site
SO:0001712	\N	\N	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	SO:0001712	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	46578	\N	\N	sequence	0	SO	H3K79_trimethylation_site	H3K79_trimethylation_site
SO:0001735	SO:0001712	\N	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	SO:0001712	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	491354	\N	\N	sequence	1	SO	H3K79_methylation_site	H3K79_trimethylation_site
SO:0001701	SO:0001735	\N	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	SO:0001712	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	1073968	\N	\N	sequence	2	SO	histone_methylation_site	H3K79_trimethylation_site
SO:0001700	SO:0001701	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001712	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	1905085	\N	\N	sequence	3	SO	histone_modification	H3K79_trimethylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001712	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	2929514	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H3K79_trimethylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001712	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	2929515	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H3K79_trimethylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001712	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	4002603	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H3K79_trimethylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001712	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	4002604	SOFA	SOFA	sequence	5	SO	biological_region	H3K79_trimethylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001712	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	4966851	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H3K79_trimethylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001712	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	7105135	SOFA	SOFA	sequence	11	SO	region	H3K79_trimethylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001712	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	5741434	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H3K79_trimethylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001712	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	7181713	SOFA	SOFA	sequence	12	SO	sequence_feature	H3K79_trimethylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001712	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	6311175	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H3K79_trimethylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001712	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	6699417	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H3K79_trimethylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001712	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	6699418	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H3K79_trimethylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001712	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [http://en.wikipedia.org/wiki/Histone]	6948122	SOFA	SOFA	sequence	10	SO	biological_region	H3K79_trimethylation_site
SO:0001713	\N	\N	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H4histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	SO:0001713	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H4histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	46579	\N	\N	sequence	0	SO	H4K20_monomethylation_site	H4K20_monomethylation_site
SO:0001701	SO:0001713	\N	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	SO:0001713	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H4histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	491355	\N	\N	sequence	1	SO	histone_methylation_site	H4K20_monomethylation_site
SO:0001700	SO:0001701	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001713	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H4histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	1073969	\N	\N	sequence	2	SO	histone_modification	H4K20_monomethylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001713	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H4histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	1905086	\N	biosapiens	sequence	3	SO	post_translationally_modified_region	H4K20_monomethylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001713	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H4histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	1905087	\N	SOFA	sequence	3	SO	epigenetically_modified_region	H4K20_monomethylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001713	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H4histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	2929516	biosapiens	biosapiens	sequence	4	SO	biochemical_region_of_peptide	H4K20_monomethylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001713	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H4histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	2929517	SOFA	SOFA	sequence	4	SO	biological_region	H4K20_monomethylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001713	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H4histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	4002605	biosapiens	biosapiens	sequence	5	SO	polypeptide_motif	H4K20_monomethylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001713	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H4histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	6948124	SOFA	SOFA	sequence	10	SO	region	H4K20_monomethylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001713	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H4histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	4966853	biosapiens	biosapiens	sequence	6	SO	polypeptide_conserved_region	H4K20_monomethylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001713	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H4histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	7029782	SOFA	SOFA	sequence	11	SO	sequence_feature	H4K20_monomethylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001713	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H4histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	5741436	biosapiens	biosapiens,SOFA	sequence	7	SO	polypeptide_region	H4K20_monomethylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001713	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H4histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	6311176	biosapiens,SOFA	SOFA	sequence	8	SO	polypeptide	H4K20_monomethylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001713	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H4histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	6311177	biosapiens,SOFA	SOFA	sequence	8	SO	biological_region	H4K20_monomethylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001713	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H4histone protein is mono-methylated." [http://en.wikipedia.org/wiki/Histone]	6699419	SOFA	SOFA	sequence	9	SO	biological_region	H4K20_monomethylation_site
SO:0001714	\N	\N	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B protein is methylated." [http://en.wikipedia.org/wiki/Histone]	SO:0001714	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B protein is methylated." [http://en.wikipedia.org/wiki/Histone]	46580	\N	\N	sequence	0	SO	H2BK5_monomethylation_site	H2BK5_monomethylation_site
SO:0001701	SO:0001714	\N	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	SO:0001714	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B protein is methylated." [http://en.wikipedia.org/wiki/Histone]	491356	\N	\N	sequence	1	SO	histone_methylation_site	H2BK5_monomethylation_site
SO:0001700	SO:0001701	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001714	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B protein is methylated." [http://en.wikipedia.org/wiki/Histone]	1073970	\N	\N	sequence	2	SO	histone_modification	H2BK5_monomethylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001714	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B protein is methylated." [http://en.wikipedia.org/wiki/Histone]	1905088	\N	biosapiens	sequence	3	SO	post_translationally_modified_region	H2BK5_monomethylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001714	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B protein is methylated." [http://en.wikipedia.org/wiki/Histone]	1905089	\N	SOFA	sequence	3	SO	epigenetically_modified_region	H2BK5_monomethylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001714	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B protein is methylated." [http://en.wikipedia.org/wiki/Histone]	2929518	biosapiens	biosapiens	sequence	4	SO	biochemical_region_of_peptide	H2BK5_monomethylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001714	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B protein is methylated." [http://en.wikipedia.org/wiki/Histone]	2929519	SOFA	SOFA	sequence	4	SO	biological_region	H2BK5_monomethylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001714	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B protein is methylated." [http://en.wikipedia.org/wiki/Histone]	4002607	biosapiens	biosapiens	sequence	5	SO	polypeptide_motif	H2BK5_monomethylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001714	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B protein is methylated." [http://en.wikipedia.org/wiki/Histone]	6948125	SOFA	SOFA	sequence	10	SO	region	H2BK5_monomethylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001714	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B protein is methylated." [http://en.wikipedia.org/wiki/Histone]	4966855	biosapiens	biosapiens	sequence	6	SO	polypeptide_conserved_region	H2BK5_monomethylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001714	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B protein is methylated." [http://en.wikipedia.org/wiki/Histone]	7029783	SOFA	SOFA	sequence	11	SO	sequence_feature	H2BK5_monomethylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001714	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B protein is methylated." [http://en.wikipedia.org/wiki/Histone]	5741437	biosapiens	biosapiens,SOFA	sequence	7	SO	polypeptide_region	H2BK5_monomethylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001714	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B protein is methylated." [http://en.wikipedia.org/wiki/Histone]	6311178	biosapiens,SOFA	SOFA	sequence	8	SO	polypeptide	H2BK5_monomethylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001714	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B protein is methylated." [http://en.wikipedia.org/wiki/Histone]	6311179	biosapiens,SOFA	SOFA	sequence	8	SO	biological_region	H2BK5_monomethylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001714	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B protein is methylated." [http://en.wikipedia.org/wiki/Histone]	6699421	SOFA	SOFA	sequence	9	SO	biological_region	H2BK5_monomethylation_site
SO:0001715	\N	\N	"An ISRE is a transcriptional cis regulatory region, containing the consensus region: YAGTTTC(A/T)YTTTYCC, responsible for increased transcription via interferon binding." [http://genesdev.cshlp.org/content/2/4/383.abstrac]	SO:0001715	"An ISRE is a transcriptional cis regulatory region, containing the consensus region: YAGTTTC(A/T)YTTTYCC, responsible for increased transcription via interferon binding." [http://genesdev.cshlp.org/content/2/4/383.abstrac]	46581	\N	\N	sequence	0	SO	ISRE	ISRE
SO:0001055	SO:0001715	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001715	"An ISRE is a transcriptional cis regulatory region, containing the consensus region: YAGTTTC(A/T)YTTTYCC, responsible for increased transcription via interferon binding." [http://genesdev.cshlp.org/content/2/4/383.abstrac]	491357	\N	SOFA	sequence	1	SO	transcriptional_cis_regulatory_region	ISRE
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001715	"An ISRE is a transcriptional cis regulatory region, containing the consensus region: YAGTTTC(A/T)YTTTYCC, responsible for increased transcription via interferon binding." [http://genesdev.cshlp.org/content/2/4/383.abstrac]	1073971	SOFA	SOFA	sequence	2	SO	transcription_regulatory_region	ISRE
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001715	"An ISRE is a transcriptional cis regulatory region, containing the consensus region: YAGTTTC(A/T)YTTTYCC, responsible for increased transcription via interferon binding." [http://genesdev.cshlp.org/content/2/4/383.abstrac]	1905090	SOFA	SOFA	sequence	3	SO	regulatory_region	ISRE
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001715	"An ISRE is a transcriptional cis regulatory region, containing the consensus region: YAGTTTC(A/T)YTTTYCC, responsible for increased transcription via interferon binding." [http://genesdev.cshlp.org/content/2/4/383.abstrac]	2929520	SOFA	SOFA	sequence	4	SO	gene_member_region	ISRE
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001715	"An ISRE is a transcriptional cis regulatory region, containing the consensus region: YAGTTTC(A/T)YTTTYCC, responsible for increased transcription via interferon binding." [http://genesdev.cshlp.org/content/2/4/383.abstrac]	4002609	SOFA	SOFA	sequence	5	SO	biological_region	ISRE
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001715	"An ISRE is a transcriptional cis regulatory region, containing the consensus region: YAGTTTC(A/T)YTTTYCC, responsible for increased transcription via interferon binding." [http://genesdev.cshlp.org/content/2/4/383.abstrac]	4966857	SOFA	SOFA	sequence	6	SO	region	ISRE
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001715	"An ISRE is a transcriptional cis regulatory region, containing the consensus region: YAGTTTC(A/T)YTTTYCC, responsible for increased transcription via interferon binding." [http://genesdev.cshlp.org/content/2/4/383.abstrac]	5741438	SOFA	SOFA	sequence	7	SO	sequence_feature	ISRE
SO:0001716	\N	\N	"A histone modification site where ubiquitin may be added." [SO:ke]	SO:0001716	"A histone modification site where ubiquitin may be added." [SO:ke]	46582	\N	\N	sequence	0	SO	histone_ubiqitination_site	histone_ubiqitination_site
SO:0001700	SO:0001716	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001716	"A histone modification site where ubiquitin may be added." [SO:ke]	491358	\N	\N	sequence	1	SO	histone_modification	histone_ubiqitination_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001716	"A histone modification site where ubiquitin may be added." [SO:ke]	1073972	\N	biosapiens	sequence	2	SO	post_translationally_modified_region	histone_ubiqitination_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001716	"A histone modification site where ubiquitin may be added." [SO:ke]	1073973	\N	SOFA	sequence	2	SO	epigenetically_modified_region	histone_ubiqitination_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001716	"A histone modification site where ubiquitin may be added." [SO:ke]	1905091	biosapiens	biosapiens	sequence	3	SO	biochemical_region_of_peptide	histone_ubiqitination_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001716	"A histone modification site where ubiquitin may be added." [SO:ke]	1905092	SOFA	SOFA	sequence	3	SO	biological_region	histone_ubiqitination_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001716	"A histone modification site where ubiquitin may be added." [SO:ke]	2929521	biosapiens	biosapiens	sequence	4	SO	polypeptide_motif	histone_ubiqitination_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001716	"A histone modification site where ubiquitin may be added." [SO:ke]	6699423	SOFA	SOFA	sequence	9	SO	region	histone_ubiqitination_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001716	"A histone modification site where ubiquitin may be added." [SO:ke]	4002610	biosapiens	biosapiens	sequence	5	SO	polypeptide_conserved_region	histone_ubiqitination_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001716	"A histone modification site where ubiquitin may be added." [SO:ke]	6778564	SOFA	SOFA	sequence	10	SO	sequence_feature	histone_ubiqitination_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001716	"A histone modification site where ubiquitin may be added." [SO:ke]	4966858	biosapiens	biosapiens,SOFA	sequence	6	SO	polypeptide_region	histone_ubiqitination_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001716	"A histone modification site where ubiquitin may be added." [SO:ke]	5741439	biosapiens,SOFA	SOFA	sequence	7	SO	polypeptide	histone_ubiqitination_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001716	"A histone modification site where ubiquitin may be added." [SO:ke]	5741440	biosapiens,SOFA	SOFA	sequence	7	SO	biological_region	histone_ubiqitination_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001716	"A histone modification site where ubiquitin may be added." [SO:ke]	6311180	SOFA	SOFA	sequence	8	SO	biological_region	histone_ubiqitination_site
SO:0001717	\N	\N	"A histone modification site on H2B where ubiquitin may be added." [SO:ke]	SO:0001717	"A histone modification site on H2B where ubiquitin may be added." [SO:ke]	46583	\N	\N	sequence	0	SO	H2B_ubiquitination_site	H2B_ubiquitination_site
SO:0001716	SO:0001717	\N	"A histone modification site where ubiquitin may be added." [SO:ke]	SO:0001717	"A histone modification site on H2B where ubiquitin may be added." [SO:ke]	491359	\N	\N	sequence	1	SO	histone_ubiqitination_site	H2B_ubiquitination_site
SO:0001700	SO:0001716	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001717	"A histone modification site on H2B where ubiquitin may be added." [SO:ke]	1073974	\N	\N	sequence	2	SO	histone_modification	H2B_ubiquitination_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001717	"A histone modification site on H2B where ubiquitin may be added." [SO:ke]	1905093	\N	biosapiens	sequence	3	SO	post_translationally_modified_region	H2B_ubiquitination_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001717	"A histone modification site on H2B where ubiquitin may be added." [SO:ke]	1905094	\N	SOFA	sequence	3	SO	epigenetically_modified_region	H2B_ubiquitination_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001717	"A histone modification site on H2B where ubiquitin may be added." [SO:ke]	2929523	biosapiens	biosapiens	sequence	4	SO	biochemical_region_of_peptide	H2B_ubiquitination_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001717	"A histone modification site on H2B where ubiquitin may be added." [SO:ke]	2929524	SOFA	SOFA	sequence	4	SO	biological_region	H2B_ubiquitination_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001717	"A histone modification site on H2B where ubiquitin may be added." [SO:ke]	4002612	biosapiens	biosapiens	sequence	5	SO	polypeptide_motif	H2B_ubiquitination_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001717	"A histone modification site on H2B where ubiquitin may be added." [SO:ke]	6948126	SOFA	SOFA	sequence	10	SO	region	H2B_ubiquitination_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001717	"A histone modification site on H2B where ubiquitin may be added." [SO:ke]	4966859	biosapiens	biosapiens	sequence	6	SO	polypeptide_conserved_region	H2B_ubiquitination_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001717	"A histone modification site on H2B where ubiquitin may be added." [SO:ke]	7029784	SOFA	SOFA	sequence	11	SO	sequence_feature	H2B_ubiquitination_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001717	"A histone modification site on H2B where ubiquitin may be added." [SO:ke]	5741441	biosapiens	biosapiens,SOFA	sequence	7	SO	polypeptide_region	H2B_ubiquitination_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001717	"A histone modification site on H2B where ubiquitin may be added." [SO:ke]	6311182	biosapiens,SOFA	SOFA	sequence	8	SO	polypeptide	H2B_ubiquitination_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001717	"A histone modification site on H2B where ubiquitin may be added." [SO:ke]	6311183	biosapiens,SOFA	SOFA	sequence	8	SO	biological_region	H2B_ubiquitination_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001717	"A histone modification site on H2B where ubiquitin may be added." [SO:ke]	6699424	SOFA	SOFA	sequence	9	SO	biological_region	H2B_ubiquitination_site
SO:0001718	\N	\N	"A kind of histone modification site, whereby the 18th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	SO:0001718	"A kind of histone modification site, whereby the 18th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	46584	\N	\N	sequence	0	SO	H3K18_acetylation_site	H3K18_acetylation_site
SO:0001973	SO:0001718	\N	"A histone 3 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	SO:0001718	"A kind of histone modification site, whereby the 18th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	491360	\N	\N	sequence	1	SO	histone_3_acetylation_site	H3K18_acetylation_site
SO:0001702	SO:0001973	\N	"A histone modification where the modification is the acylation of the residue." [SO:ke]	SO:0001718	"A kind of histone modification site, whereby the 18th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	1073975	\N	\N	sequence	2	SO	histone_acetylation_site	H3K18_acetylation_site
SO:0001700	SO:0001702	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001718	"A kind of histone modification site, whereby the 18th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	1905095	\N	\N	sequence	3	SO	histone_modification	H3K18_acetylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001718	"A kind of histone modification site, whereby the 18th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	2929525	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H3K18_acetylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001718	"A kind of histone modification site, whereby the 18th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	2929526	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H3K18_acetylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001718	"A kind of histone modification site, whereby the 18th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	4002614	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H3K18_acetylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001718	"A kind of histone modification site, whereby the 18th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	4002615	SOFA	SOFA	sequence	5	SO	biological_region	H3K18_acetylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001718	"A kind of histone modification site, whereby the 18th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	4966861	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H3K18_acetylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001718	"A kind of histone modification site, whereby the 18th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	7105136	SOFA	SOFA	sequence	11	SO	region	H3K18_acetylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001718	"A kind of histone modification site, whereby the 18th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	5741442	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H3K18_acetylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001718	"A kind of histone modification site, whereby the 18th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	7181714	SOFA	SOFA	sequence	12	SO	sequence_feature	H3K18_acetylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001718	"A kind of histone modification site, whereby the 18th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	6311184	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H3K18_acetylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001718	"A kind of histone modification site, whereby the 18th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	6699426	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H3K18_acetylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001718	"A kind of histone modification site, whereby the 18th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	6699427	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H3K18_acetylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001718	"A kind of histone modification site, whereby the 18th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	6948127	SOFA	SOFA	sequence	10	SO	biological_region	H3K18_acetylation_site
SO:0001719	\N	\N	"A kind of histone modification, whereby the 23rd residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	SO:0001719	"A kind of histone modification, whereby the 23rd residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	46585	\N	\N	sequence	0	SO	H3K23_acetylation_site	H3K23_acetylation_site
SO:0001973	SO:0001719	\N	"A histone 3 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	SO:0001719	"A kind of histone modification, whereby the 23rd residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	491361	\N	\N	sequence	1	SO	histone_3_acetylation_site	H3K23_acetylation_site
SO:0001702	SO:0001973	\N	"A histone modification where the modification is the acylation of the residue." [SO:ke]	SO:0001719	"A kind of histone modification, whereby the 23rd residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	1073976	\N	\N	sequence	2	SO	histone_acetylation_site	H3K23_acetylation_site
SO:0001700	SO:0001702	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001719	"A kind of histone modification, whereby the 23rd residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	1905096	\N	\N	sequence	3	SO	histone_modification	H3K23_acetylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001719	"A kind of histone modification, whereby the 23rd residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	2929527	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H3K23_acetylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001719	"A kind of histone modification, whereby the 23rd residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	2929528	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H3K23_acetylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001719	"A kind of histone modification, whereby the 23rd residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	4002616	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H3K23_acetylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001719	"A kind of histone modification, whereby the 23rd residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	4002617	SOFA	SOFA	sequence	5	SO	biological_region	H3K23_acetylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001719	"A kind of histone modification, whereby the 23rd residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	4966863	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H3K23_acetylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001719	"A kind of histone modification, whereby the 23rd residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	7105137	SOFA	SOFA	sequence	11	SO	region	H3K23_acetylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001719	"A kind of histone modification, whereby the 23rd residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	5741444	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H3K23_acetylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001719	"A kind of histone modification, whereby the 23rd residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	7181715	SOFA	SOFA	sequence	12	SO	sequence_feature	H3K23_acetylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001719	"A kind of histone modification, whereby the 23rd residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	6311185	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H3K23_acetylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001719	"A kind of histone modification, whereby the 23rd residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	6699428	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H3K23_acetylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001719	"A kind of histone modification, whereby the 23rd residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	6699429	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H3K23_acetylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001719	"A kind of histone modification, whereby the 23rd residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:ke]	6948129	SOFA	SOFA	sequence	10	SO	biological_region	H3K23_acetylation_site
SO:0001720	\N	SOFA	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001720	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	46586	\N	SOFA	sequence	0	SO	epigenetically_modified_region	epigenetically_modified_region
SO:0001411	SO:0001720	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001720	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	491362	SOFA	SOFA	sequence	1	SO	biological_region	epigenetically_modified_region
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001720	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	1073977	SOFA	SOFA	sequence	2	SO	region	epigenetically_modified_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001720	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	1905097	SOFA	SOFA	sequence	3	SO	sequence_feature	epigenetically_modified_region
SO:0001722	\N	\N	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	SO:0001722	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	46587	\N	\N	sequence	0	SO	H3K36_monomethylation_site	H3K36_monomethylation_site
SO:0001733	SO:0001722	\N	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	SO:0001722	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	491363	\N	\N	sequence	1	SO	H3K36_methylation_site	H3K36_monomethylation_site
SO:0001701	SO:0001733	\N	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	SO:0001722	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	1073978	\N	\N	sequence	2	SO	histone_methylation_site	H3K36_monomethylation_site
SO:0001700	SO:0001701	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001722	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	1905098	\N	\N	sequence	3	SO	histone_modification	H3K36_monomethylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001722	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	2929529	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H3K36_monomethylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001722	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	2929530	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H3K36_monomethylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001722	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	4002618	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H3K36_monomethylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001722	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	4002619	SOFA	SOFA	sequence	5	SO	biological_region	H3K36_monomethylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001722	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	4966865	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H3K36_monomethylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001722	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	7105138	SOFA	SOFA	sequence	11	SO	region	H3K36_monomethylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001722	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	5741446	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H3K36_monomethylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001722	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	7181716	SOFA	SOFA	sequence	12	SO	sequence_feature	H3K36_monomethylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001722	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	6311186	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H3K36_monomethylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001722	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	6699430	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H3K36_monomethylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001722	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	6699431	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H3K36_monomethylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001722	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	6948131	SOFA	SOFA	sequence	10	SO	biological_region	H3K36_monomethylation_site
SO:0001723	\N	\N	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is dimethylated." [SO:ke]	SO:0001723	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is dimethylated." [SO:ke]	46588	\N	\N	sequence	0	SO	H3K36_dimethylation_site	H3K36_dimethylation_site
SO:0001733	SO:0001723	\N	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	SO:0001723	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is dimethylated." [SO:ke]	491364	\N	\N	sequence	1	SO	H3K36_methylation_site	H3K36_dimethylation_site
SO:0001701	SO:0001733	\N	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	SO:0001723	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is dimethylated." [SO:ke]	1073979	\N	\N	sequence	2	SO	histone_methylation_site	H3K36_dimethylation_site
SO:0001700	SO:0001701	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001723	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is dimethylated." [SO:ke]	1905099	\N	\N	sequence	3	SO	histone_modification	H3K36_dimethylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001723	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is dimethylated." [SO:ke]	2929531	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H3K36_dimethylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001723	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is dimethylated." [SO:ke]	2929532	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H3K36_dimethylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001723	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is dimethylated." [SO:ke]	4002620	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H3K36_dimethylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001723	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is dimethylated." [SO:ke]	4002621	SOFA	SOFA	sequence	5	SO	biological_region	H3K36_dimethylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001723	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is dimethylated." [SO:ke]	4966867	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H3K36_dimethylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001723	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is dimethylated." [SO:ke]	7105139	SOFA	SOFA	sequence	11	SO	region	H3K36_dimethylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001723	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is dimethylated." [SO:ke]	5741448	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H3K36_dimethylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001723	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is dimethylated." [SO:ke]	7181717	SOFA	SOFA	sequence	12	SO	sequence_feature	H3K36_dimethylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001723	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is dimethylated." [SO:ke]	6311187	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H3K36_dimethylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001723	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is dimethylated." [SO:ke]	6699432	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H3K36_dimethylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001723	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is dimethylated." [SO:ke]	6699433	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H3K36_dimethylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001723	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is dimethylated." [SO:ke]	6948133	SOFA	SOFA	sequence	10	SO	biological_region	H3K36_dimethylation_site
SO:0001724	\N	\N	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [SO:ke]	SO:0001724	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [SO:ke]	46589	\N	\N	sequence	0	SO	H3K36_trimethylation_site	H3K36_trimethylation_site
SO:0001733	SO:0001724	\N	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	SO:0001724	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [SO:ke]	491365	\N	\N	sequence	1	SO	H3K36_methylation_site	H3K36_trimethylation_site
SO:0001701	SO:0001733	\N	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	SO:0001724	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [SO:ke]	1073980	\N	\N	sequence	2	SO	histone_methylation_site	H3K36_trimethylation_site
SO:0001700	SO:0001701	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001724	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [SO:ke]	1905100	\N	\N	sequence	3	SO	histone_modification	H3K36_trimethylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001724	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [SO:ke]	2929533	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H3K36_trimethylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001724	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [SO:ke]	2929534	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H3K36_trimethylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001724	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [SO:ke]	4002622	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H3K36_trimethylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001724	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [SO:ke]	4002623	SOFA	SOFA	sequence	5	SO	biological_region	H3K36_trimethylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001724	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [SO:ke]	4966869	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H3K36_trimethylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001724	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [SO:ke]	7105140	SOFA	SOFA	sequence	11	SO	region	H3K36_trimethylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001724	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [SO:ke]	5741450	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H3K36_trimethylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001724	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [SO:ke]	7181718	SOFA	SOFA	sequence	12	SO	sequence_feature	H3K36_trimethylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001724	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [SO:ke]	6311188	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H3K36_trimethylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001724	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [SO:ke]	6699434	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H3K36_trimethylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001724	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [SO:ke]	6699435	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H3K36_trimethylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001724	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is tri-methylated." [SO:ke]	6948135	SOFA	SOFA	sequence	10	SO	biological_region	H3K36_trimethylation_site
SO:0001725	\N	\N	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	SO:0001725	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	46590	\N	\N	sequence	0	SO	H3K4_dimethylation_site	H3K4_dimethylation_site
SO:0001734	SO:0001725	\N	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is methylated." [SO:ke]	SO:0001725	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	491366	\N	\N	sequence	1	SO	H3K4_methylation_site	H3K4_dimethylation_site
SO:0001701	SO:0001734	\N	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	SO:0001725	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	1073981	\N	\N	sequence	2	SO	histone_methylation_site	H3K4_dimethylation_site
SO:0001700	SO:0001701	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001725	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	1905101	\N	\N	sequence	3	SO	histone_modification	H3K4_dimethylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001725	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	2929535	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H3K4_dimethylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001725	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	2929536	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H3K4_dimethylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001725	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	4002624	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H3K4_dimethylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001725	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	4002625	SOFA	SOFA	sequence	5	SO	biological_region	H3K4_dimethylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001725	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	4966871	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H3K4_dimethylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001725	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	7105141	SOFA	SOFA	sequence	11	SO	region	H3K4_dimethylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001725	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	5741452	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H3K4_dimethylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001725	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	7181719	SOFA	SOFA	sequence	12	SO	sequence_feature	H3K4_dimethylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001725	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	6311189	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H3K4_dimethylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001725	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	6699436	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H3K4_dimethylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001725	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	6699437	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H3K4_dimethylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001725	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	6948137	SOFA	SOFA	sequence	10	SO	biological_region	H3K4_dimethylation_site
SO:0001726	\N	\N	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	SO:0001726	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	46591	\N	\N	sequence	0	SO	H3K27_dimethylation_site	H3K27_dimethylation_site
SO:0001732	SO:0001726	\N	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	SO:0001726	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	491367	\N	\N	sequence	1	SO	H3K27_methylation_site	H3K27_dimethylation_site
SO:0001701	SO:0001732	\N	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	SO:0001726	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	1073982	\N	\N	sequence	2	SO	histone_methylation_site	H3K27_dimethylation_site
SO:0001700	SO:0001701	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001726	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	1905102	\N	\N	sequence	3	SO	histone_modification	H3K27_dimethylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001726	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	2929537	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H3K27_dimethylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001726	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	2929538	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H3K27_dimethylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001726	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	4002626	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H3K27_dimethylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001726	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	4002627	SOFA	SOFA	sequence	5	SO	biological_region	H3K27_dimethylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001726	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	4966873	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H3K27_dimethylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001726	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	7105142	SOFA	SOFA	sequence	11	SO	region	H3K27_dimethylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001726	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	5741454	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H3K27_dimethylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001726	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	7181720	SOFA	SOFA	sequence	12	SO	sequence_feature	H3K27_dimethylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001726	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	6311190	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H3K27_dimethylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001726	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	6699438	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H3K27_dimethylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001726	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	6699439	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H3K27_dimethylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001726	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is di-methylated." [SO:ke]	6948139	SOFA	SOFA	sequence	10	SO	biological_region	H3K27_dimethylation_site
SO:0001727	\N	\N	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	SO:0001727	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	46592	\N	\N	sequence	0	SO	H3K9_monomethylation_site	H3K9_monomethylation_site
SO:0001736	SO:0001727	\N	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	SO:0001727	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	491368	\N	\N	sequence	1	SO	H3K9_methylation_site	H3K9_monomethylation_site
SO:0001701	SO:0001736	\N	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	SO:0001727	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	1073983	\N	\N	sequence	2	SO	histone_methylation_site	H3K9_monomethylation_site
SO:0001700	SO:0001701	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001727	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	1905103	\N	\N	sequence	3	SO	histone_modification	H3K9_monomethylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001727	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	2929539	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H3K9_monomethylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001727	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	2929540	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H3K9_monomethylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001727	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	4002628	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H3K9_monomethylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001727	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	4002629	SOFA	SOFA	sequence	5	SO	biological_region	H3K9_monomethylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001727	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	4966875	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H3K9_monomethylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001727	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	7105143	SOFA	SOFA	sequence	11	SO	region	H3K9_monomethylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001727	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	5741456	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H3K9_monomethylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001727	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	7181721	SOFA	SOFA	sequence	12	SO	sequence_feature	H3K9_monomethylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001727	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	6311191	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H3K9_monomethylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001727	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	6699440	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H3K9_monomethylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001727	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	6699441	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H3K9_monomethylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001727	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is mono-methylated." [SO:ke]	6948141	SOFA	SOFA	sequence	10	SO	biological_region	H3K9_monomethylation_site
SO:0001728	\N	\N	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein may be dimethylated." [SO:ke]	SO:0001728	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein may be dimethylated." [SO:ke]	46593	\N	\N	sequence	0	SO	H3K9_dimethylation_site	H3K9_dimethylation_site
SO:0001736	SO:0001728	\N	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	SO:0001728	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein may be dimethylated." [SO:ke]	491369	\N	\N	sequence	1	SO	H3K9_methylation_site	H3K9_dimethylation_site
SO:0001701	SO:0001736	\N	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	SO:0001728	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein may be dimethylated." [SO:ke]	1073984	\N	\N	sequence	2	SO	histone_methylation_site	H3K9_dimethylation_site
SO:0001700	SO:0001701	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001728	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein may be dimethylated." [SO:ke]	1905104	\N	\N	sequence	3	SO	histone_modification	H3K9_dimethylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001728	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein may be dimethylated." [SO:ke]	2929541	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H3K9_dimethylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001728	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein may be dimethylated." [SO:ke]	2929542	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H3K9_dimethylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001728	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein may be dimethylated." [SO:ke]	4002630	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H3K9_dimethylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001728	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein may be dimethylated." [SO:ke]	4002631	SOFA	SOFA	sequence	5	SO	biological_region	H3K9_dimethylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001728	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein may be dimethylated." [SO:ke]	4966877	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H3K9_dimethylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001728	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein may be dimethylated." [SO:ke]	7105144	SOFA	SOFA	sequence	11	SO	region	H3K9_dimethylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001728	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein may be dimethylated." [SO:ke]	5741458	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H3K9_dimethylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001728	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein may be dimethylated." [SO:ke]	7181722	SOFA	SOFA	sequence	12	SO	sequence_feature	H3K9_dimethylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001728	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein may be dimethylated." [SO:ke]	6311192	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H3K9_dimethylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001728	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein may be dimethylated." [SO:ke]	6699442	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H3K9_dimethylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001728	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein may be dimethylated." [SO:ke]	6699443	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H3K9_dimethylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001728	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein may be dimethylated." [SO:ke]	6948143	SOFA	SOFA	sequence	10	SO	biological_region	H3K9_dimethylation_site
SO:0001729	\N	\N	"A kind of histone modification site, whereby the 16th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	SO:0001729	"A kind of histone modification site, whereby the 16th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	46594	\N	\N	sequence	0	SO	H4K16_acetylation_site	H4K16_acetylation_site
SO:0001972	SO:0001729	\N	"A histone 4 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	SO:0001729	"A kind of histone modification site, whereby the 16th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	491370	\N	\N	sequence	1	SO	histone_4_acetylation_site	H4K16_acetylation_site
SO:0001702	SO:0001972	\N	"A histone modification where the modification is the acylation of the residue." [SO:ke]	SO:0001729	"A kind of histone modification site, whereby the 16th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	1073985	\N	\N	sequence	2	SO	histone_acetylation_site	H4K16_acetylation_site
SO:0001700	SO:0001702	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001729	"A kind of histone modification site, whereby the 16th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	1905105	\N	\N	sequence	3	SO	histone_modification	H4K16_acetylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001729	"A kind of histone modification site, whereby the 16th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	2929543	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H4K16_acetylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001729	"A kind of histone modification site, whereby the 16th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	2929544	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H4K16_acetylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001729	"A kind of histone modification site, whereby the 16th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	4002632	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H4K16_acetylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001729	"A kind of histone modification site, whereby the 16th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	4002633	SOFA	SOFA	sequence	5	SO	biological_region	H4K16_acetylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001729	"A kind of histone modification site, whereby the 16th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	4966879	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H4K16_acetylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001729	"A kind of histone modification site, whereby the 16th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	7105145	SOFA	SOFA	sequence	11	SO	region	H4K16_acetylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001729	"A kind of histone modification site, whereby the 16th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	5741460	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H4K16_acetylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001729	"A kind of histone modification site, whereby the 16th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	7181723	SOFA	SOFA	sequence	12	SO	sequence_feature	H4K16_acetylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001729	"A kind of histone modification site, whereby the 16th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	6311193	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H4K16_acetylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001729	"A kind of histone modification site, whereby the 16th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	6699444	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H4K16_acetylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001729	"A kind of histone modification site, whereby the 16th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	6699445	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H4K16_acetylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001729	"A kind of histone modification site, whereby the 16th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	6948145	SOFA	SOFA	sequence	10	SO	biological_region	H4K16_acetylation_site
SO:0001730	\N	\N	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	SO:0001730	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	46595	\N	\N	sequence	0	SO	H4K5_acetylation_site	H4K5_acetylation_site
SO:0001972	SO:0001730	\N	"A histone 4 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	SO:0001730	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	491371	\N	\N	sequence	1	SO	histone_4_acetylation_site	H4K5_acetylation_site
SO:0001702	SO:0001972	\N	"A histone modification where the modification is the acylation of the residue." [SO:ke]	SO:0001730	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	1073986	\N	\N	sequence	2	SO	histone_acetylation_site	H4K5_acetylation_site
SO:0001700	SO:0001702	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001730	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	1905106	\N	\N	sequence	3	SO	histone_modification	H4K5_acetylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001730	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	2929545	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H4K5_acetylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001730	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	2929546	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H4K5_acetylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001730	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	4002634	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H4K5_acetylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001730	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	4002635	SOFA	SOFA	sequence	5	SO	biological_region	H4K5_acetylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001730	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	4966881	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H4K5_acetylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001730	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	7105146	SOFA	SOFA	sequence	11	SO	region	H4K5_acetylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001730	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	5741462	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H4K5_acetylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001730	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	7181724	SOFA	SOFA	sequence	12	SO	sequence_feature	H4K5_acetylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001730	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	6311194	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H4K5_acetylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001730	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	6699446	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H4K5_acetylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001730	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	6699447	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H4K5_acetylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001730	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:ke]	6948147	SOFA	SOFA	sequence	10	SO	biological_region	H4K5_acetylation_site
SO:0001731	\N	\N	"A kind of histone modification site, whereby the 8th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:KE]	SO:0001731	"A kind of histone modification site, whereby the 8th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:KE]	46596	\N	\N	sequence	0	SO	H4K8_acetylation_site	H4K8_acetylation_site
SO:0001972	SO:0001731	\N	"A histone 4 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	SO:0001731	"A kind of histone modification site, whereby the 8th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:KE]	491372	\N	\N	sequence	1	SO	histone_4_acetylation_site	H4K8_acetylation_site
SO:0001702	SO:0001972	\N	"A histone modification where the modification is the acylation of the residue." [SO:ke]	SO:0001731	"A kind of histone modification site, whereby the 8th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:KE]	1073987	\N	\N	sequence	2	SO	histone_acetylation_site	H4K8_acetylation_site
SO:0001700	SO:0001702	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001731	"A kind of histone modification site, whereby the 8th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:KE]	1905107	\N	\N	sequence	3	SO	histone_modification	H4K8_acetylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001731	"A kind of histone modification site, whereby the 8th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:KE]	2929547	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H4K8_acetylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001731	"A kind of histone modification site, whereby the 8th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:KE]	2929548	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H4K8_acetylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001731	"A kind of histone modification site, whereby the 8th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:KE]	4002636	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H4K8_acetylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001731	"A kind of histone modification site, whereby the 8th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:KE]	4002637	SOFA	SOFA	sequence	5	SO	biological_region	H4K8_acetylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001731	"A kind of histone modification site, whereby the 8th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:KE]	4966883	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H4K8_acetylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001731	"A kind of histone modification site, whereby the 8th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:KE]	7105147	SOFA	SOFA	sequence	11	SO	region	H4K8_acetylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001731	"A kind of histone modification site, whereby the 8th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:KE]	5741464	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H4K8_acetylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001731	"A kind of histone modification site, whereby the 8th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:KE]	7181725	SOFA	SOFA	sequence	12	SO	sequence_feature	H4K8_acetylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001731	"A kind of histone modification site, whereby the 8th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:KE]	6311195	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H4K8_acetylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001731	"A kind of histone modification site, whereby the 8th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:KE]	6699448	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H4K8_acetylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001731	"A kind of histone modification site, whereby the 8th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:KE]	6699449	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H4K8_acetylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001731	"A kind of histone modification site, whereby the 8th residue (a lysine), from the start of the H4 histone protein is acetylated." [SO:KE]	6948149	SOFA	SOFA	sequence	10	SO	biological_region	H4K8_acetylation_site
SO:0001732	\N	\N	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	SO:0001732	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	46597	\N	\N	sequence	0	SO	H3K27_methylation_site	H3K27_methylation_site
SO:0001701	SO:0001732	\N	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	SO:0001732	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	491373	\N	\N	sequence	1	SO	histone_methylation_site	H3K27_methylation_site
SO:0001700	SO:0001701	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001732	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	1073988	\N	\N	sequence	2	SO	histone_modification	H3K27_methylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001732	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	1905108	\N	biosapiens	sequence	3	SO	post_translationally_modified_region	H3K27_methylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001732	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	1905109	\N	SOFA	sequence	3	SO	epigenetically_modified_region	H3K27_methylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001732	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	2929549	biosapiens	biosapiens	sequence	4	SO	biochemical_region_of_peptide	H3K27_methylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001732	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	2929550	SOFA	SOFA	sequence	4	SO	biological_region	H3K27_methylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001732	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	4002638	biosapiens	biosapiens	sequence	5	SO	polypeptide_motif	H3K27_methylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001732	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	6948151	SOFA	SOFA	sequence	10	SO	region	H3K27_methylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001732	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	4966885	biosapiens	biosapiens	sequence	6	SO	polypeptide_conserved_region	H3K27_methylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001732	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	7029785	SOFA	SOFA	sequence	11	SO	sequence_feature	H3K27_methylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001732	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	5741466	biosapiens	biosapiens,SOFA	sequence	7	SO	polypeptide_region	H3K27_methylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001732	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	6311196	biosapiens,SOFA	SOFA	sequence	8	SO	polypeptide	H3K27_methylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001732	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	6311197	biosapiens,SOFA	SOFA	sequence	8	SO	biological_region	H3K27_methylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001732	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	6699450	SOFA	SOFA	sequence	9	SO	biological_region	H3K27_methylation_site
SO:0001733	\N	\N	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	SO:0001733	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	46598	\N	\N	sequence	0	SO	H3K36_methylation_site	H3K36_methylation_site
SO:0001701	SO:0001733	\N	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	SO:0001733	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	491374	\N	\N	sequence	1	SO	histone_methylation_site	H3K36_methylation_site
SO:0001700	SO:0001701	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001733	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	1073989	\N	\N	sequence	2	SO	histone_modification	H3K36_methylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001733	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	1905110	\N	biosapiens	sequence	3	SO	post_translationally_modified_region	H3K36_methylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001733	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	1905111	\N	SOFA	sequence	3	SO	epigenetically_modified_region	H3K36_methylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001733	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	2929551	biosapiens	biosapiens	sequence	4	SO	biochemical_region_of_peptide	H3K36_methylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001733	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	2929552	SOFA	SOFA	sequence	4	SO	biological_region	H3K36_methylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001733	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	4002640	biosapiens	biosapiens	sequence	5	SO	polypeptide_motif	H3K36_methylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001733	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	6948152	SOFA	SOFA	sequence	10	SO	region	H3K36_methylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001733	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	4966887	biosapiens	biosapiens	sequence	6	SO	polypeptide_conserved_region	H3K36_methylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001733	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	7029786	SOFA	SOFA	sequence	11	SO	sequence_feature	H3K36_methylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001733	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	5741467	biosapiens	biosapiens,SOFA	sequence	7	SO	polypeptide_region	H3K36_methylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001733	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	6311198	biosapiens,SOFA	SOFA	sequence	8	SO	polypeptide	H3K36_methylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001733	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	6311199	biosapiens,SOFA	SOFA	sequence	8	SO	biological_region	H3K36_methylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001733	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	6699452	SOFA	SOFA	sequence	9	SO	biological_region	H3K36_methylation_site
SO:0001734	\N	\N	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is methylated." [SO:ke]	SO:0001734	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is methylated." [SO:ke]	46599	\N	\N	sequence	0	SO	H3K4_methylation_site	H3K4_methylation_site
SO:0001701	SO:0001734	\N	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	SO:0001734	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is methylated." [SO:ke]	491375	\N	\N	sequence	1	SO	histone_methylation_site	H3K4_methylation_site
SO:0001700	SO:0001701	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001734	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is methylated." [SO:ke]	1073990	\N	\N	sequence	2	SO	histone_modification	H3K4_methylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001734	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is methylated." [SO:ke]	1905112	\N	biosapiens	sequence	3	SO	post_translationally_modified_region	H3K4_methylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001734	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is methylated." [SO:ke]	1905113	\N	SOFA	sequence	3	SO	epigenetically_modified_region	H3K4_methylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001734	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is methylated." [SO:ke]	2929553	biosapiens	biosapiens	sequence	4	SO	biochemical_region_of_peptide	H3K4_methylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001734	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is methylated." [SO:ke]	2929554	SOFA	SOFA	sequence	4	SO	biological_region	H3K4_methylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001734	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is methylated." [SO:ke]	4002642	biosapiens	biosapiens	sequence	5	SO	polypeptide_motif	H3K4_methylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001734	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is methylated." [SO:ke]	6948153	SOFA	SOFA	sequence	10	SO	region	H3K4_methylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001734	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is methylated." [SO:ke]	4966889	biosapiens	biosapiens	sequence	6	SO	polypeptide_conserved_region	H3K4_methylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001734	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is methylated." [SO:ke]	7029787	SOFA	SOFA	sequence	11	SO	sequence_feature	H3K4_methylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001734	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is methylated." [SO:ke]	5741468	biosapiens	biosapiens,SOFA	sequence	7	SO	polypeptide_region	H3K4_methylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001734	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is methylated." [SO:ke]	6311200	biosapiens,SOFA	SOFA	sequence	8	SO	polypeptide	H3K4_methylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001734	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is methylated." [SO:ke]	6311201	biosapiens,SOFA	SOFA	sequence	8	SO	biological_region	H3K4_methylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001734	"A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is methylated." [SO:ke]	6699454	SOFA	SOFA	sequence	9	SO	biological_region	H3K4_methylation_site
SO:0001735	\N	\N	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	SO:0001735	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	46600	\N	\N	sequence	0	SO	H3K79_methylation_site	H3K79_methylation_site
SO:0001701	SO:0001735	\N	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	SO:0001735	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	491376	\N	\N	sequence	1	SO	histone_methylation_site	H3K79_methylation_site
SO:0001700	SO:0001701	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001735	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	1073991	\N	\N	sequence	2	SO	histone_modification	H3K79_methylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001735	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	1905114	\N	biosapiens	sequence	3	SO	post_translationally_modified_region	H3K79_methylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001735	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	1905115	\N	SOFA	sequence	3	SO	epigenetically_modified_region	H3K79_methylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001735	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	2929555	biosapiens	biosapiens	sequence	4	SO	biochemical_region_of_peptide	H3K79_methylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001735	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	2929556	SOFA	SOFA	sequence	4	SO	biological_region	H3K79_methylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001735	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	4002644	biosapiens	biosapiens	sequence	5	SO	polypeptide_motif	H3K79_methylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001735	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	6948154	SOFA	SOFA	sequence	10	SO	region	H3K79_methylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001735	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	4966891	biosapiens	biosapiens	sequence	6	SO	polypeptide_conserved_region	H3K79_methylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001735	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	7029788	SOFA	SOFA	sequence	11	SO	sequence_feature	H3K79_methylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001735	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	5741469	biosapiens	biosapiens,SOFA	sequence	7	SO	polypeptide_region	H3K79_methylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001735	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	6311202	biosapiens,SOFA	SOFA	sequence	8	SO	polypeptide	H3K79_methylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001735	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	6311203	biosapiens,SOFA	SOFA	sequence	8	SO	biological_region	H3K79_methylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001735	"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	6699456	SOFA	SOFA	sequence	9	SO	biological_region	H3K79_methylation_site
SO:0001736	\N	\N	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	SO:0001736	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	46601	\N	\N	sequence	0	SO	H3K9_methylation_site	H3K9_methylation_site
SO:0001701	SO:0001736	\N	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	SO:0001736	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	491377	\N	\N	sequence	1	SO	histone_methylation_site	H3K9_methylation_site
SO:0001700	SO:0001701	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001736	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	1073992	\N	\N	sequence	2	SO	histone_modification	H3K9_methylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001736	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	1905116	\N	biosapiens	sequence	3	SO	post_translationally_modified_region	H3K9_methylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001736	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	1905117	\N	SOFA	sequence	3	SO	epigenetically_modified_region	H3K9_methylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001736	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	2929557	biosapiens	biosapiens	sequence	4	SO	biochemical_region_of_peptide	H3K9_methylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001736	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	2929558	SOFA	SOFA	sequence	4	SO	biological_region	H3K9_methylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001736	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	4002646	biosapiens	biosapiens	sequence	5	SO	polypeptide_motif	H3K9_methylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001736	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	6948155	SOFA	SOFA	sequence	10	SO	region	H3K9_methylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001736	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	4966893	biosapiens	biosapiens	sequence	6	SO	polypeptide_conserved_region	H3K9_methylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001736	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	7029789	SOFA	SOFA	sequence	11	SO	sequence_feature	H3K9_methylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001736	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	5741470	biosapiens	biosapiens,SOFA	sequence	7	SO	polypeptide_region	H3K9_methylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001736	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	6311204	biosapiens,SOFA	SOFA	sequence	8	SO	polypeptide	H3K9_methylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001736	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	6311205	biosapiens,SOFA	SOFA	sequence	8	SO	biological_region	H3K9_methylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001736	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is methylated." [SO:ke]	6699458	SOFA	SOFA	sequence	9	SO	biological_region	H3K9_methylation_site
SO:0001737	\N	\N	"A histone modification, whereby the histone protein is acylated at multiple sites in a region." [SO:ke]	SO:0001737	"A histone modification, whereby the histone protein is acylated at multiple sites in a region." [SO:ke]	46602	\N	\N	sequence	0	SO	histone_acylation_region	histone_acylation_region
SO:0001700	SO:0001737	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001737	"A histone modification, whereby the histone protein is acylated at multiple sites in a region." [SO:ke]	491378	\N	\N	sequence	1	SO	histone_modification	histone_acylation_region
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001737	"A histone modification, whereby the histone protein is acylated at multiple sites in a region." [SO:ke]	1073993	\N	biosapiens	sequence	2	SO	post_translationally_modified_region	histone_acylation_region
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001737	"A histone modification, whereby the histone protein is acylated at multiple sites in a region." [SO:ke]	1073994	\N	SOFA	sequence	2	SO	epigenetically_modified_region	histone_acylation_region
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001737	"A histone modification, whereby the histone protein is acylated at multiple sites in a region." [SO:ke]	1905118	biosapiens	biosapiens	sequence	3	SO	biochemical_region_of_peptide	histone_acylation_region
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001737	"A histone modification, whereby the histone protein is acylated at multiple sites in a region." [SO:ke]	1905119	SOFA	SOFA	sequence	3	SO	biological_region	histone_acylation_region
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001737	"A histone modification, whereby the histone protein is acylated at multiple sites in a region." [SO:ke]	2929559	biosapiens	biosapiens	sequence	4	SO	polypeptide_motif	histone_acylation_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001737	"A histone modification, whereby the histone protein is acylated at multiple sites in a region." [SO:ke]	6699460	SOFA	SOFA	sequence	9	SO	region	histone_acylation_region
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001737	"A histone modification, whereby the histone protein is acylated at multiple sites in a region." [SO:ke]	4002648	biosapiens	biosapiens	sequence	5	SO	polypeptide_conserved_region	histone_acylation_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001737	"A histone modification, whereby the histone protein is acylated at multiple sites in a region." [SO:ke]	6778565	SOFA	SOFA	sequence	10	SO	sequence_feature	histone_acylation_region
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001737	"A histone modification, whereby the histone protein is acylated at multiple sites in a region." [SO:ke]	4966895	biosapiens	biosapiens,SOFA	sequence	6	SO	polypeptide_region	histone_acylation_region
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001737	"A histone modification, whereby the histone protein is acylated at multiple sites in a region." [SO:ke]	5741471	biosapiens,SOFA	SOFA	sequence	7	SO	polypeptide	histone_acylation_region
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001737	"A histone modification, whereby the histone protein is acylated at multiple sites in a region." [SO:ke]	5741472	biosapiens,SOFA	SOFA	sequence	7	SO	biological_region	histone_acylation_region
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001737	"A histone modification, whereby the histone protein is acylated at multiple sites in a region." [SO:ke]	6311206	SOFA	SOFA	sequence	8	SO	biological_region	histone_acylation_region
SO:0001738	\N	\N	"A region of the H4 histone whereby multiple lysines are acylated." [SO:ke]	SO:0001738	"A region of the H4 histone whereby multiple lysines are acylated." [SO:ke]	46603	\N	\N	sequence	0	SO	H4K_acylation_region	H4K_acylation_region
SO:0001737	SO:0001738	\N	"A histone modification, whereby the histone protein is acylated at multiple sites in a region." [SO:ke]	SO:0001738	"A region of the H4 histone whereby multiple lysines are acylated." [SO:ke]	491379	\N	\N	sequence	1	SO	histone_acylation_region	H4K_acylation_region
SO:0001700	SO:0001737	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001738	"A region of the H4 histone whereby multiple lysines are acylated." [SO:ke]	1073995	\N	\N	sequence	2	SO	histone_modification	H4K_acylation_region
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001738	"A region of the H4 histone whereby multiple lysines are acylated." [SO:ke]	1905120	\N	biosapiens	sequence	3	SO	post_translationally_modified_region	H4K_acylation_region
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001738	"A region of the H4 histone whereby multiple lysines are acylated." [SO:ke]	1905121	\N	SOFA	sequence	3	SO	epigenetically_modified_region	H4K_acylation_region
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001738	"A region of the H4 histone whereby multiple lysines are acylated." [SO:ke]	2929561	biosapiens	biosapiens	sequence	4	SO	biochemical_region_of_peptide	H4K_acylation_region
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001738	"A region of the H4 histone whereby multiple lysines are acylated." [SO:ke]	2929562	SOFA	SOFA	sequence	4	SO	biological_region	H4K_acylation_region
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001738	"A region of the H4 histone whereby multiple lysines are acylated." [SO:ke]	4002650	biosapiens	biosapiens	sequence	5	SO	polypeptide_motif	H4K_acylation_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001738	"A region of the H4 histone whereby multiple lysines are acylated." [SO:ke]	6948156	SOFA	SOFA	sequence	10	SO	region	H4K_acylation_region
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001738	"A region of the H4 histone whereby multiple lysines are acylated." [SO:ke]	4966896	biosapiens	biosapiens	sequence	6	SO	polypeptide_conserved_region	H4K_acylation_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001738	"A region of the H4 histone whereby multiple lysines are acylated." [SO:ke]	7029790	SOFA	SOFA	sequence	11	SO	sequence_feature	H4K_acylation_region
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001738	"A region of the H4 histone whereby multiple lysines are acylated." [SO:ke]	5741473	biosapiens	biosapiens,SOFA	sequence	7	SO	polypeptide_region	H4K_acylation_region
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001738	"A region of the H4 histone whereby multiple lysines are acylated." [SO:ke]	6311208	biosapiens,SOFA	SOFA	sequence	8	SO	polypeptide	H4K_acylation_region
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001738	"A region of the H4 histone whereby multiple lysines are acylated." [SO:ke]	6311209	biosapiens,SOFA	SOFA	sequence	8	SO	biological_region	H4K_acylation_region
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001738	"A region of the H4 histone whereby multiple lysines are acylated." [SO:ke]	6699461	SOFA	SOFA	sequence	9	SO	biological_region	H4K_acylation_region
SO:0001739	\N	\N	"A gene with a start codon other than AUG." [SO:xp]	SO:0001739	"A gene with a start codon other than AUG." [SO:xp]	46604	\N	\N	sequence	0	SO	gene_with_non_canonical_start_codon	gene_with_non_canonical_start_codon
SO:0000704	SO:0001739	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0001739	"A gene with a start codon other than AUG." [SO:xp]	491380	\N	SOFA	sequence	1	SO	gene	gene_with_non_canonical_start_codon
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001739	"A gene with a start codon other than AUG." [SO:xp]	1073996	SOFA	SOFA	sequence	2	SO	biological_region	gene_with_non_canonical_start_codon
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001739	"A gene with a start codon other than AUG." [SO:xp]	1905122	SOFA	SOFA	sequence	3	SO	region	gene_with_non_canonical_start_codon
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001739	"A gene with a start codon other than AUG." [SO:xp]	2929563	SOFA	SOFA	sequence	4	SO	sequence_feature	gene_with_non_canonical_start_codon
SO:0001740	\N	\N	"A gene with a translational start codon of CUG." [SO:mc]	SO:0001740	"A gene with a translational start codon of CUG." [SO:mc]	46605	\N	\N	sequence	0	SO	gene_with_start_codon_CUG	gene_with_start_codon_CUG
SO:0001739	SO:0001740	\N	"A gene with a start codon other than AUG." [SO:xp]	SO:0001740	"A gene with a translational start codon of CUG." [SO:mc]	491381	\N	\N	sequence	1	SO	gene_with_non_canonical_start_codon	gene_with_start_codon_CUG
SO:0000704	SO:0001739	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0001740	"A gene with a translational start codon of CUG." [SO:mc]	1073997	\N	SOFA	sequence	2	SO	gene	gene_with_start_codon_CUG
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001740	"A gene with a translational start codon of CUG." [SO:mc]	1905123	SOFA	SOFA	sequence	3	SO	biological_region	gene_with_start_codon_CUG
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001740	"A gene with a translational start codon of CUG." [SO:mc]	2929564	SOFA	SOFA	sequence	4	SO	region	gene_with_start_codon_CUG
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001740	"A gene with a translational start codon of CUG." [SO:mc]	4002652	SOFA	SOFA	sequence	5	SO	sequence_feature	gene_with_start_codon_CUG
SO:0001741	\N	\N	"A gene segment which when incorporated by somatic recombination in the final gene transcript results in a nonfunctional product." [SO:hd]	SO:0001741	"A gene segment which when incorporated by somatic recombination in the final gene transcript results in a nonfunctional product." [SO:hd]	46606	\N	\N	sequence	0	SO	pseudogenic_gene_segment	pseudogenic_gene_segment
SO:3000000	SO:0001741	\N	"A gene component region which acts as a recombinational unit of a gene whose functional form is generated through somatic recombination." [GOC:add]	SO:0001741	"A gene segment which when incorporated by somatic recombination in the final gene transcript results in a nonfunctional product." [SO:hd]	491382	\N	\N	sequence	1	SO	gene_segment	pseudogenic_gene_segment
SO:0000842	SO:3000000	\N	"" []	SO:0001741	"A gene segment which when incorporated by somatic recombination in the final gene transcript results in a nonfunctional product." [SO:hd]	1073998	\N	SOFA	sequence	2	SO	gene_component_region	pseudogenic_gene_segment
SO:0000704	SO:0000842	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0001741	"A gene segment which when incorporated by somatic recombination in the final gene transcript results in a nonfunctional product." [SO:hd]	1905124	SOFA	SOFA	sequence	3	SO	gene	pseudogenic_gene_segment
SO:0001411	SO:0000842	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001741	"A gene segment which when incorporated by somatic recombination in the final gene transcript results in a nonfunctional product." [SO:hd]	1905125	SOFA	SOFA	sequence	3	SO	biological_region	pseudogenic_gene_segment
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001741	"A gene segment which when incorporated by somatic recombination in the final gene transcript results in a nonfunctional product." [SO:hd]	2929565	SOFA	SOFA	sequence	4	SO	biological_region	pseudogenic_gene_segment
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001741	"A gene segment which when incorporated by somatic recombination in the final gene transcript results in a nonfunctional product." [SO:hd]	4002653	SOFA	SOFA	sequence	5	SO	region	pseudogenic_gene_segment
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001741	"A gene segment which when incorporated by somatic recombination in the final gene transcript results in a nonfunctional product." [SO:hd]	4385854	SOFA	SOFA	sequence	6	SO	sequence_feature	pseudogenic_gene_segment
SO:0001742	\N	DBVAR	"A sequence alteration whereby the copy number of a given regions is greater than the reference sequence." [SO:ke]	SO:0001742	"A sequence alteration whereby the copy number of a given regions is greater than the reference sequence." [SO:ke]	46607	\N	DBVAR	sequence	0	SO	copy_number_gain	copy_number_gain
SO:0001019	SO:0001742	DBVAR	"A variation that increases or decreases the copy number of a given region." [SO:ke]	SO:0001742	"A sequence alteration whereby the copy number of a given regions is greater than the reference sequence." [SO:ke]	491383	DBVAR	SOFA	sequence	1	SO	copy_number_variation	copy_number_gain
SO:0000248	SO:0001019	DBVAR	"A kind of kind of sequence alteration where the copies of a region present varies across a population." [SO:ke]	SO:0001742	"A sequence alteration whereby the copy number of a given regions is greater than the reference sequence." [SO:ke]	1073999	SOFA	\N	sequence	2	SO	sequence_length_alteration	copy_number_gain
SO:0001059	SO:0000248	DBVAR	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0001742	"A sequence alteration whereby the copy number of a given regions is greater than the reference sequence." [SO:ke]	1905126	\N	SOFA	sequence	3	SO	sequence_alteration	copy_number_gain
SO:0002072	SO:0001059	DBVAR	"" []	SO:0001742	"A sequence alteration whereby the copy number of a given regions is greater than the reference sequence." [SO:ke]	2929567	SOFA	\N	sequence	4	SO	sequence_comparison	copy_number_gain
SO:0000110	SO:0002072	DBVAR	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001742	"A sequence alteration whereby the copy number of a given regions is greater than the reference sequence." [SO:ke]	4002655	\N	SOFA	sequence	5	SO	sequence_feature	copy_number_gain
SO:0001743	\N	DBVAR	"A sequence alteration whereby the copy number of a given region is less than the reference sequence." [SO:ke]	SO:0001743	"A sequence alteration whereby the copy number of a given region is less than the reference sequence." [SO:ke]	46608	\N	DBVAR	sequence	0	SO	copy_number_loss	copy_number_loss
SO:0001019	SO:0001743	DBVAR	"A variation that increases or decreases the copy number of a given region." [SO:ke]	SO:0001743	"A sequence alteration whereby the copy number of a given region is less than the reference sequence." [SO:ke]	491384	DBVAR	SOFA	sequence	1	SO	copy_number_variation	copy_number_loss
SO:0000248	SO:0001019	DBVAR	"A kind of kind of sequence alteration where the copies of a region present varies across a population." [SO:ke]	SO:0001743	"A sequence alteration whereby the copy number of a given region is less than the reference sequence." [SO:ke]	1074000	SOFA	\N	sequence	2	SO	sequence_length_alteration	copy_number_loss
SO:0001059	SO:0000248	DBVAR	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0001743	"A sequence alteration whereby the copy number of a given region is less than the reference sequence." [SO:ke]	1905127	\N	SOFA	sequence	3	SO	sequence_alteration	copy_number_loss
SO:0002072	SO:0001059	DBVAR	"" []	SO:0001743	"A sequence alteration whereby the copy number of a given region is less than the reference sequence." [SO:ke]	2929568	SOFA	\N	sequence	4	SO	sequence_comparison	copy_number_loss
SO:0000110	SO:0002072	DBVAR	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001743	"A sequence alteration whereby the copy number of a given region is less than the reference sequence." [SO:ke]	4002656	\N	SOFA	sequence	5	SO	sequence_feature	copy_number_loss
SO:0001744	\N	DBVAR	"Uniparental disomy is a sequence_alteration where a diploid individual receives two copies for all or part of a chromosome from one parent and no copies of the same chromosome or region from the other parent." [SO:BM]	SO:0001744	"Uniparental disomy is a sequence_alteration where a diploid individual receives two copies for all or part of a chromosome from one parent and no copies of the same chromosome or region from the other parent." [SO:BM]	46609	\N	DBVAR	sequence	0	SO	UPD	UPD
SO:0001059	SO:0001744	DBVAR	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0001744	"Uniparental disomy is a sequence_alteration where a diploid individual receives two copies for all or part of a chromosome from one parent and no copies of the same chromosome or region from the other parent." [SO:BM]	491385	DBVAR	SOFA	sequence	1	SO	sequence_alteration	UPD
SO:0002072	SO:0001059	DBVAR	"" []	SO:0001744	"Uniparental disomy is a sequence_alteration where a diploid individual receives two copies for all or part of a chromosome from one parent and no copies of the same chromosome or region from the other parent." [SO:BM]	1074001	SOFA	\N	sequence	2	SO	sequence_comparison	UPD
SO:0000110	SO:0002072	DBVAR	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001744	"Uniparental disomy is a sequence_alteration where a diploid individual receives two copies for all or part of a chromosome from one parent and no copies of the same chromosome or region from the other parent." [SO:BM]	1905128	\N	SOFA	sequence	3	SO	sequence_feature	UPD
SO:0001745	\N	\N	"Uniparental disomy is a sequence_alteration where a diploid individual receives two copies for all or part of a chromosome from the mother and no copies of the same chromosome or region from the father." [SO:bm]	SO:0001745	"Uniparental disomy is a sequence_alteration where a diploid individual receives two copies for all or part of a chromosome from the mother and no copies of the same chromosome or region from the father." [SO:bm]	46610	\N	\N	sequence	0	SO	maternal_uniparental_disomy	maternal_uniparental_disomy
SO:0001744	SO:0001745	\N	"Uniparental disomy is a sequence_alteration where a diploid individual receives two copies for all or part of a chromosome from one parent and no copies of the same chromosome or region from the other parent." [SO:BM]	SO:0001745	"Uniparental disomy is a sequence_alteration where a diploid individual receives two copies for all or part of a chromosome from the mother and no copies of the same chromosome or region from the father." [SO:bm]	491386	\N	DBVAR	sequence	1	SO	UPD	maternal_uniparental_disomy
SO:0001059	SO:0001744	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0001745	"Uniparental disomy is a sequence_alteration where a diploid individual receives two copies for all or part of a chromosome from the mother and no copies of the same chromosome or region from the father." [SO:bm]	1074002	DBVAR	SOFA	sequence	2	SO	sequence_alteration	maternal_uniparental_disomy
SO:0002072	SO:0001059	\N	"" []	SO:0001745	"Uniparental disomy is a sequence_alteration where a diploid individual receives two copies for all or part of a chromosome from the mother and no copies of the same chromosome or region from the father." [SO:bm]	1905129	SOFA	\N	sequence	3	SO	sequence_comparison	maternal_uniparental_disomy
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001745	"Uniparental disomy is a sequence_alteration where a diploid individual receives two copies for all or part of a chromosome from the mother and no copies of the same chromosome or region from the father." [SO:bm]	2929569	\N	SOFA	sequence	4	SO	sequence_feature	maternal_uniparental_disomy
SO:0001746	\N	\N	"Uniparental disomy is a sequence_alteration where a diploid individual receives two copies for all or part of a chromosome from the father and no copies of the same chromosome or region from the mother." [SO:bm]	SO:0001746	"Uniparental disomy is a sequence_alteration where a diploid individual receives two copies for all or part of a chromosome from the father and no copies of the same chromosome or region from the mother." [SO:bm]	46611	\N	\N	sequence	0	SO	paternal_uniparental_disomy	paternal_uniparental_disomy
SO:0001744	SO:0001746	\N	"Uniparental disomy is a sequence_alteration where a diploid individual receives two copies for all or part of a chromosome from one parent and no copies of the same chromosome or region from the other parent." [SO:BM]	SO:0001746	"Uniparental disomy is a sequence_alteration where a diploid individual receives two copies for all or part of a chromosome from the father and no copies of the same chromosome or region from the mother." [SO:bm]	491387	\N	DBVAR	sequence	1	SO	UPD	paternal_uniparental_disomy
SO:0001059	SO:0001744	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0001746	"Uniparental disomy is a sequence_alteration where a diploid individual receives two copies for all or part of a chromosome from the father and no copies of the same chromosome or region from the mother." [SO:bm]	1074003	DBVAR	SOFA	sequence	2	SO	sequence_alteration	paternal_uniparental_disomy
SO:0002072	SO:0001059	\N	"" []	SO:0001746	"Uniparental disomy is a sequence_alteration where a diploid individual receives two copies for all or part of a chromosome from the father and no copies of the same chromosome or region from the mother." [SO:bm]	1905130	SOFA	\N	sequence	3	SO	sequence_comparison	paternal_uniparental_disomy
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001746	"Uniparental disomy is a sequence_alteration where a diploid individual receives two copies for all or part of a chromosome from the father and no copies of the same chromosome or region from the mother." [SO:bm]	2929570	\N	SOFA	sequence	4	SO	sequence_feature	paternal_uniparental_disomy
SO:0001747	\N	\N	"A DNA sequence that in the normal state of the chromosome corresponds to an unfolded, un-complexed stretch of double-stranded DNA." [SO:cb]	SO:0001747	"A DNA sequence that in the normal state of the chromosome corresponds to an unfolded, un-complexed stretch of double-stranded DNA." [SO:cb]	46612	\N	\N	sequence	0	SO	open_chromatin_region	open_chromatin_region
SO:0001411	SO:0001747	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001747	"A DNA sequence that in the normal state of the chromosome corresponds to an unfolded, un-complexed stretch of double-stranded DNA." [SO:cb]	491388	\N	SOFA	sequence	1	SO	biological_region	open_chromatin_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001747	"A DNA sequence that in the normal state of the chromosome corresponds to an unfolded, un-complexed stretch of double-stranded DNA." [SO:cb]	1074004	SOFA	SOFA	sequence	2	SO	region	open_chromatin_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001747	"A DNA sequence that in the normal state of the chromosome corresponds to an unfolded, un-complexed stretch of double-stranded DNA." [SO:cb]	1905131	SOFA	SOFA	sequence	3	SO	sequence_feature	open_chromatin_region
SO:0001748	\N	\N	"A SL2_acceptor_site which appends the SL3 RNA leader sequence to the 5' end of an mRNA. SL3 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	SO:0001748	"A SL2_acceptor_site which appends the SL3 RNA leader sequence to the 5' end of an mRNA. SL3 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	46613	\N	\N	sequence	0	SO	SL3_acceptor_site	SL3_acceptor_site
SO:0000709	SO:0001748	\N	"A trans_splicing_acceptor_site which appends the 22nt SL2 RNA leader sequence to the 5' end of mRNAs. SL2 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	SO:0001748	"A SL2_acceptor_site which appends the SL3 RNA leader sequence to the 5' end of an mRNA. SL3 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	491389	\N	\N	sequence	1	SO	SL2_acceptor_site	SL3_acceptor_site
SO:0000706	SO:0000709	\N	"The 3' splice site of the acceptor primary transcript." [SO:ke]	SO:0001748	"A SL2_acceptor_site which appends the SL3 RNA leader sequence to the 5' end of an mRNA. SL3 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	1074005	\N	SOFA	sequence	2	SO	trans_splice_acceptor_site	SL3_acceptor_site
SO:0001420	SO:0000706	\N	"Primary transcript region bordering trans-splice junction." [SO:ke]	SO:0001748	"A SL2_acceptor_site which appends the SL3 RNA leader sequence to the 5' end of an mRNA. SL3 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	1905132	SOFA	SOFA	sequence	3	SO	trans_splice_site	SL3_acceptor_site
SO:0000162	SO:0001420	\N	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	SO:0001748	"A SL2_acceptor_site which appends the SL3 RNA leader sequence to the 5' end of an mRNA. SL3 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	2929571	SOFA	SOFA	sequence	4	SO	splice_site	SL3_acceptor_site
SO:0000835	SO:0000162	\N	"A part of a primary transcript." [SO:ke]	SO:0001748	"A SL2_acceptor_site which appends the SL3 RNA leader sequence to the 5' end of an mRNA. SL3 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4002657	SOFA	SOFA	sequence	5	SO	primary_transcript_region	SL3_acceptor_site
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001748	"A SL2_acceptor_site which appends the SL3 RNA leader sequence to the 5' end of an mRNA. SL3 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4966898	SOFA	SOFA	sequence	6	SO	primary_transcript	SL3_acceptor_site
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0001748	"A SL2_acceptor_site which appends the SL3 RNA leader sequence to the 5' end of an mRNA. SL3 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4966899	SOFA	SOFA	sequence	6	SO	transcript_region	SL3_acceptor_site
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001748	"A SL2_acceptor_site which appends the SL3 RNA leader sequence to the 5' end of an mRNA. SL3 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	5741474	SOFA	SOFA	sequence	7	SO	transcript	SL3_acceptor_site
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001748	"A SL2_acceptor_site which appends the SL3 RNA leader sequence to the 5' end of an mRNA. SL3 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	5741475	SOFA	SOFA	sequence	7	SO	transcript	SL3_acceptor_site
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001748	"A SL2_acceptor_site which appends the SL3 RNA leader sequence to the 5' end of an mRNA. SL3 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	5741476	SOFA	SOFA	sequence	7	SO	biological_region	SL3_acceptor_site
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001748	"A SL2_acceptor_site which appends the SL3 RNA leader sequence to the 5' end of an mRNA. SL3 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6311210	SOFA	SOFA	sequence	8	SO	gene_member_region	SL3_acceptor_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001748	"A SL2_acceptor_site which appends the SL3 RNA leader sequence to the 5' end of an mRNA. SL3 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6948157	SOFA	SOFA	sequence	10	SO	region	SL3_acceptor_site
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001748	"A SL2_acceptor_site which appends the SL3 RNA leader sequence to the 5' end of an mRNA. SL3 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6699463	SOFA	SOFA	sequence	9	SO	biological_region	SL3_acceptor_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001748	"A SL2_acceptor_site which appends the SL3 RNA leader sequence to the 5' end of an mRNA. SL3 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	7085878	SOFA	SOFA	sequence	11	SO	sequence_feature	SL3_acceptor_site
SO:0001749	\N	\N	"A SL2_acceptor_site which appends the SL4 RNA leader sequence to the 5' end of an mRNA. SL4 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	SO:0001749	"A SL2_acceptor_site which appends the SL4 RNA leader sequence to the 5' end of an mRNA. SL4 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	46614	\N	\N	sequence	0	SO	SL4_acceptor_site	SL4_acceptor_site
SO:0000709	SO:0001749	\N	"A trans_splicing_acceptor_site which appends the 22nt SL2 RNA leader sequence to the 5' end of mRNAs. SL2 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	SO:0001749	"A SL2_acceptor_site which appends the SL4 RNA leader sequence to the 5' end of an mRNA. SL4 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	491390	\N	\N	sequence	1	SO	SL2_acceptor_site	SL4_acceptor_site
SO:0000706	SO:0000709	\N	"The 3' splice site of the acceptor primary transcript." [SO:ke]	SO:0001749	"A SL2_acceptor_site which appends the SL4 RNA leader sequence to the 5' end of an mRNA. SL4 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	1074006	\N	SOFA	sequence	2	SO	trans_splice_acceptor_site	SL4_acceptor_site
SO:0001420	SO:0000706	\N	"Primary transcript region bordering trans-splice junction." [SO:ke]	SO:0001749	"A SL2_acceptor_site which appends the SL4 RNA leader sequence to the 5' end of an mRNA. SL4 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	1905133	SOFA	SOFA	sequence	3	SO	trans_splice_site	SL4_acceptor_site
SO:0000162	SO:0001420	\N	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	SO:0001749	"A SL2_acceptor_site which appends the SL4 RNA leader sequence to the 5' end of an mRNA. SL4 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	2929572	SOFA	SOFA	sequence	4	SO	splice_site	SL4_acceptor_site
SO:0000835	SO:0000162	\N	"A part of a primary transcript." [SO:ke]	SO:0001749	"A SL2_acceptor_site which appends the SL4 RNA leader sequence to the 5' end of an mRNA. SL4 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4002658	SOFA	SOFA	sequence	5	SO	primary_transcript_region	SL4_acceptor_site
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001749	"A SL2_acceptor_site which appends the SL4 RNA leader sequence to the 5' end of an mRNA. SL4 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4966900	SOFA	SOFA	sequence	6	SO	primary_transcript	SL4_acceptor_site
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0001749	"A SL2_acceptor_site which appends the SL4 RNA leader sequence to the 5' end of an mRNA. SL4 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4966901	SOFA	SOFA	sequence	6	SO	transcript_region	SL4_acceptor_site
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001749	"A SL2_acceptor_site which appends the SL4 RNA leader sequence to the 5' end of an mRNA. SL4 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	5741477	SOFA	SOFA	sequence	7	SO	transcript	SL4_acceptor_site
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001749	"A SL2_acceptor_site which appends the SL4 RNA leader sequence to the 5' end of an mRNA. SL4 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	5741478	SOFA	SOFA	sequence	7	SO	transcript	SL4_acceptor_site
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001749	"A SL2_acceptor_site which appends the SL4 RNA leader sequence to the 5' end of an mRNA. SL4 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	5741479	SOFA	SOFA	sequence	7	SO	biological_region	SL4_acceptor_site
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001749	"A SL2_acceptor_site which appends the SL4 RNA leader sequence to the 5' end of an mRNA. SL4 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6311212	SOFA	SOFA	sequence	8	SO	gene_member_region	SL4_acceptor_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001749	"A SL2_acceptor_site which appends the SL4 RNA leader sequence to the 5' end of an mRNA. SL4 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6948158	SOFA	SOFA	sequence	10	SO	region	SL4_acceptor_site
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001749	"A SL2_acceptor_site which appends the SL4 RNA leader sequence to the 5' end of an mRNA. SL4 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6699465	SOFA	SOFA	sequence	9	SO	biological_region	SL4_acceptor_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001749	"A SL2_acceptor_site which appends the SL4 RNA leader sequence to the 5' end of an mRNA. SL4 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	7085879	SOFA	SOFA	sequence	11	SO	sequence_feature	SL4_acceptor_site
SO:0001750	\N	\N	"A SL2_acceptor_site which appends the SL5 RNA leader sequence to the 5' end of an mRNA. SL5 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	SO:0001750	"A SL2_acceptor_site which appends the SL5 RNA leader sequence to the 5' end of an mRNA. SL5 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	46615	\N	\N	sequence	0	SO	SL5_acceptor_site	SL5_acceptor_site
SO:0000709	SO:0001750	\N	"A trans_splicing_acceptor_site which appends the 22nt SL2 RNA leader sequence to the 5' end of mRNAs. SL2 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	SO:0001750	"A SL2_acceptor_site which appends the SL5 RNA leader sequence to the 5' end of an mRNA. SL5 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	491391	\N	\N	sequence	1	SO	SL2_acceptor_site	SL5_acceptor_site
SO:0000706	SO:0000709	\N	"The 3' splice site of the acceptor primary transcript." [SO:ke]	SO:0001750	"A SL2_acceptor_site which appends the SL5 RNA leader sequence to the 5' end of an mRNA. SL5 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	1074007	\N	SOFA	sequence	2	SO	trans_splice_acceptor_site	SL5_acceptor_site
SO:0001420	SO:0000706	\N	"Primary transcript region bordering trans-splice junction." [SO:ke]	SO:0001750	"A SL2_acceptor_site which appends the SL5 RNA leader sequence to the 5' end of an mRNA. SL5 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	1905134	SOFA	SOFA	sequence	3	SO	trans_splice_site	SL5_acceptor_site
SO:0000162	SO:0001420	\N	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	SO:0001750	"A SL2_acceptor_site which appends the SL5 RNA leader sequence to the 5' end of an mRNA. SL5 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	2929573	SOFA	SOFA	sequence	4	SO	splice_site	SL5_acceptor_site
SO:0000835	SO:0000162	\N	"A part of a primary transcript." [SO:ke]	SO:0001750	"A SL2_acceptor_site which appends the SL5 RNA leader sequence to the 5' end of an mRNA. SL5 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4002659	SOFA	SOFA	sequence	5	SO	primary_transcript_region	SL5_acceptor_site
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001750	"A SL2_acceptor_site which appends the SL5 RNA leader sequence to the 5' end of an mRNA. SL5 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4966902	SOFA	SOFA	sequence	6	SO	primary_transcript	SL5_acceptor_site
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0001750	"A SL2_acceptor_site which appends the SL5 RNA leader sequence to the 5' end of an mRNA. SL5 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4966903	SOFA	SOFA	sequence	6	SO	transcript_region	SL5_acceptor_site
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001750	"A SL2_acceptor_site which appends the SL5 RNA leader sequence to the 5' end of an mRNA. SL5 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	5741480	SOFA	SOFA	sequence	7	SO	transcript	SL5_acceptor_site
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001750	"A SL2_acceptor_site which appends the SL5 RNA leader sequence to the 5' end of an mRNA. SL5 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	5741481	SOFA	SOFA	sequence	7	SO	transcript	SL5_acceptor_site
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001750	"A SL2_acceptor_site which appends the SL5 RNA leader sequence to the 5' end of an mRNA. SL5 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	5741482	SOFA	SOFA	sequence	7	SO	biological_region	SL5_acceptor_site
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001750	"A SL2_acceptor_site which appends the SL5 RNA leader sequence to the 5' end of an mRNA. SL5 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6311214	SOFA	SOFA	sequence	8	SO	gene_member_region	SL5_acceptor_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001750	"A SL2_acceptor_site which appends the SL5 RNA leader sequence to the 5' end of an mRNA. SL5 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6948159	SOFA	SOFA	sequence	10	SO	region	SL5_acceptor_site
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001750	"A SL2_acceptor_site which appends the SL5 RNA leader sequence to the 5' end of an mRNA. SL5 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6699467	SOFA	SOFA	sequence	9	SO	biological_region	SL5_acceptor_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001750	"A SL2_acceptor_site which appends the SL5 RNA leader sequence to the 5' end of an mRNA. SL5 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	7085880	SOFA	SOFA	sequence	11	SO	sequence_feature	SL5_acceptor_site
SO:0001751	\N	\N	"A SL2_acceptor_site which appends the SL6 RNA leader sequence to the 5' end of an mRNA. SL6 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	SO:0001751	"A SL2_acceptor_site which appends the SL6 RNA leader sequence to the 5' end of an mRNA. SL6 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	46616	\N	\N	sequence	0	SO	SL6_acceptor_site	SL6_acceptor_site
SO:0000709	SO:0001751	\N	"A trans_splicing_acceptor_site which appends the 22nt SL2 RNA leader sequence to the 5' end of mRNAs. SL2 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	SO:0001751	"A SL2_acceptor_site which appends the SL6 RNA leader sequence to the 5' end of an mRNA. SL6 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	491392	\N	\N	sequence	1	SO	SL2_acceptor_site	SL6_acceptor_site
SO:0000706	SO:0000709	\N	"The 3' splice site of the acceptor primary transcript." [SO:ke]	SO:0001751	"A SL2_acceptor_site which appends the SL6 RNA leader sequence to the 5' end of an mRNA. SL6 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	1074008	\N	SOFA	sequence	2	SO	trans_splice_acceptor_site	SL6_acceptor_site
SO:0001420	SO:0000706	\N	"Primary transcript region bordering trans-splice junction." [SO:ke]	SO:0001751	"A SL2_acceptor_site which appends the SL6 RNA leader sequence to the 5' end of an mRNA. SL6 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	1905135	SOFA	SOFA	sequence	3	SO	trans_splice_site	SL6_acceptor_site
SO:0000162	SO:0001420	\N	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	SO:0001751	"A SL2_acceptor_site which appends the SL6 RNA leader sequence to the 5' end of an mRNA. SL6 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	2929574	SOFA	SOFA	sequence	4	SO	splice_site	SL6_acceptor_site
SO:0000835	SO:0000162	\N	"A part of a primary transcript." [SO:ke]	SO:0001751	"A SL2_acceptor_site which appends the SL6 RNA leader sequence to the 5' end of an mRNA. SL6 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4002660	SOFA	SOFA	sequence	5	SO	primary_transcript_region	SL6_acceptor_site
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001751	"A SL2_acceptor_site which appends the SL6 RNA leader sequence to the 5' end of an mRNA. SL6 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4966904	SOFA	SOFA	sequence	6	SO	primary_transcript	SL6_acceptor_site
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0001751	"A SL2_acceptor_site which appends the SL6 RNA leader sequence to the 5' end of an mRNA. SL6 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4966905	SOFA	SOFA	sequence	6	SO	transcript_region	SL6_acceptor_site
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001751	"A SL2_acceptor_site which appends the SL6 RNA leader sequence to the 5' end of an mRNA. SL6 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	5741483	SOFA	SOFA	sequence	7	SO	transcript	SL6_acceptor_site
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001751	"A SL2_acceptor_site which appends the SL6 RNA leader sequence to the 5' end of an mRNA. SL6 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	5741484	SOFA	SOFA	sequence	7	SO	transcript	SL6_acceptor_site
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001751	"A SL2_acceptor_site which appends the SL6 RNA leader sequence to the 5' end of an mRNA. SL6 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	5741485	SOFA	SOFA	sequence	7	SO	biological_region	SL6_acceptor_site
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001751	"A SL2_acceptor_site which appends the SL6 RNA leader sequence to the 5' end of an mRNA. SL6 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6311216	SOFA	SOFA	sequence	8	SO	gene_member_region	SL6_acceptor_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001751	"A SL2_acceptor_site which appends the SL6 RNA leader sequence to the 5' end of an mRNA. SL6 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6948160	SOFA	SOFA	sequence	10	SO	region	SL6_acceptor_site
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001751	"A SL2_acceptor_site which appends the SL6 RNA leader sequence to the 5' end of an mRNA. SL6 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6699469	SOFA	SOFA	sequence	9	SO	biological_region	SL6_acceptor_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001751	"A SL2_acceptor_site which appends the SL6 RNA leader sequence to the 5' end of an mRNA. SL6 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	7085881	SOFA	SOFA	sequence	11	SO	sequence_feature	SL6_acceptor_site
SO:0001752	\N	\N	"A SL2_acceptor_site which appends the SL7 RNA leader sequence to the 5' end of an mRNA. SL7 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	SO:0001752	"A SL2_acceptor_site which appends the SL7 RNA leader sequence to the 5' end of an mRNA. SL7 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	46617	\N	\N	sequence	0	SO	SL7_acceptor_site	SL7_acceptor_site
SO:0000709	SO:0001752	\N	"A trans_splicing_acceptor_site which appends the 22nt SL2 RNA leader sequence to the 5' end of mRNAs. SL2 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	SO:0001752	"A SL2_acceptor_site which appends the SL7 RNA leader sequence to the 5' end of an mRNA. SL7 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	491393	\N	\N	sequence	1	SO	SL2_acceptor_site	SL7_acceptor_site
SO:0000706	SO:0000709	\N	"The 3' splice site of the acceptor primary transcript." [SO:ke]	SO:0001752	"A SL2_acceptor_site which appends the SL7 RNA leader sequence to the 5' end of an mRNA. SL7 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	1074009	\N	SOFA	sequence	2	SO	trans_splice_acceptor_site	SL7_acceptor_site
SO:0001420	SO:0000706	\N	"Primary transcript region bordering trans-splice junction." [SO:ke]	SO:0001752	"A SL2_acceptor_site which appends the SL7 RNA leader sequence to the 5' end of an mRNA. SL7 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	1905136	SOFA	SOFA	sequence	3	SO	trans_splice_site	SL7_acceptor_site
SO:0000162	SO:0001420	\N	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	SO:0001752	"A SL2_acceptor_site which appends the SL7 RNA leader sequence to the 5' end of an mRNA. SL7 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	2929575	SOFA	SOFA	sequence	4	SO	splice_site	SL7_acceptor_site
SO:0000835	SO:0000162	\N	"A part of a primary transcript." [SO:ke]	SO:0001752	"A SL2_acceptor_site which appends the SL7 RNA leader sequence to the 5' end of an mRNA. SL7 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4002661	SOFA	SOFA	sequence	5	SO	primary_transcript_region	SL7_acceptor_site
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001752	"A SL2_acceptor_site which appends the SL7 RNA leader sequence to the 5' end of an mRNA. SL7 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4966906	SOFA	SOFA	sequence	6	SO	primary_transcript	SL7_acceptor_site
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0001752	"A SL2_acceptor_site which appends the SL7 RNA leader sequence to the 5' end of an mRNA. SL7 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4966907	SOFA	SOFA	sequence	6	SO	transcript_region	SL7_acceptor_site
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001752	"A SL2_acceptor_site which appends the SL7 RNA leader sequence to the 5' end of an mRNA. SL7 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	5741486	SOFA	SOFA	sequence	7	SO	transcript	SL7_acceptor_site
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001752	"A SL2_acceptor_site which appends the SL7 RNA leader sequence to the 5' end of an mRNA. SL7 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	5741487	SOFA	SOFA	sequence	7	SO	transcript	SL7_acceptor_site
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001752	"A SL2_acceptor_site which appends the SL7 RNA leader sequence to the 5' end of an mRNA. SL7 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	5741488	SOFA	SOFA	sequence	7	SO	biological_region	SL7_acceptor_site
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001752	"A SL2_acceptor_site which appends the SL7 RNA leader sequence to the 5' end of an mRNA. SL7 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6311218	SOFA	SOFA	sequence	8	SO	gene_member_region	SL7_acceptor_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001752	"A SL2_acceptor_site which appends the SL7 RNA leader sequence to the 5' end of an mRNA. SL7 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6948161	SOFA	SOFA	sequence	10	SO	region	SL7_acceptor_site
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001752	"A SL2_acceptor_site which appends the SL7 RNA leader sequence to the 5' end of an mRNA. SL7 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6699471	SOFA	SOFA	sequence	9	SO	biological_region	SL7_acceptor_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001752	"A SL2_acceptor_site which appends the SL7 RNA leader sequence to the 5' end of an mRNA. SL7 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	7085882	SOFA	SOFA	sequence	11	SO	sequence_feature	SL7_acceptor_site
SO:0001753	\N	\N	"A SL2_acceptor_site which appends the SL8 RNA leader sequence to the 5' end of an mRNA. SL8 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	SO:0001753	"A SL2_acceptor_site which appends the SL8 RNA leader sequence to the 5' end of an mRNA. SL8 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	46618	\N	\N	sequence	0	SO	SL8_acceptor_site	SL8_acceptor_site
SO:0000709	SO:0001753	\N	"A trans_splicing_acceptor_site which appends the 22nt SL2 RNA leader sequence to the 5' end of mRNAs. SL2 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	SO:0001753	"A SL2_acceptor_site which appends the SL8 RNA leader sequence to the 5' end of an mRNA. SL8 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	491394	\N	\N	sequence	1	SO	SL2_acceptor_site	SL8_acceptor_site
SO:0000706	SO:0000709	\N	"The 3' splice site of the acceptor primary transcript." [SO:ke]	SO:0001753	"A SL2_acceptor_site which appends the SL8 RNA leader sequence to the 5' end of an mRNA. SL8 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	1074010	\N	SOFA	sequence	2	SO	trans_splice_acceptor_site	SL8_acceptor_site
SO:0001420	SO:0000706	\N	"Primary transcript region bordering trans-splice junction." [SO:ke]	SO:0001753	"A SL2_acceptor_site which appends the SL8 RNA leader sequence to the 5' end of an mRNA. SL8 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	1905137	SOFA	SOFA	sequence	3	SO	trans_splice_site	SL8_acceptor_site
SO:0000162	SO:0001420	\N	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	SO:0001753	"A SL2_acceptor_site which appends the SL8 RNA leader sequence to the 5' end of an mRNA. SL8 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	2929576	SOFA	SOFA	sequence	4	SO	splice_site	SL8_acceptor_site
SO:0000835	SO:0000162	\N	"A part of a primary transcript." [SO:ke]	SO:0001753	"A SL2_acceptor_site which appends the SL8 RNA leader sequence to the 5' end of an mRNA. SL8 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4002662	SOFA	SOFA	sequence	5	SO	primary_transcript_region	SL8_acceptor_site
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001753	"A SL2_acceptor_site which appends the SL8 RNA leader sequence to the 5' end of an mRNA. SL8 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4966908	SOFA	SOFA	sequence	6	SO	primary_transcript	SL8_acceptor_site
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0001753	"A SL2_acceptor_site which appends the SL8 RNA leader sequence to the 5' end of an mRNA. SL8 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4966909	SOFA	SOFA	sequence	6	SO	transcript_region	SL8_acceptor_site
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001753	"A SL2_acceptor_site which appends the SL8 RNA leader sequence to the 5' end of an mRNA. SL8 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	5741489	SOFA	SOFA	sequence	7	SO	transcript	SL8_acceptor_site
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001753	"A SL2_acceptor_site which appends the SL8 RNA leader sequence to the 5' end of an mRNA. SL8 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	5741490	SOFA	SOFA	sequence	7	SO	transcript	SL8_acceptor_site
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001753	"A SL2_acceptor_site which appends the SL8 RNA leader sequence to the 5' end of an mRNA. SL8 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	5741491	SOFA	SOFA	sequence	7	SO	biological_region	SL8_acceptor_site
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001753	"A SL2_acceptor_site which appends the SL8 RNA leader sequence to the 5' end of an mRNA. SL8 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6311220	SOFA	SOFA	sequence	8	SO	gene_member_region	SL8_acceptor_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001753	"A SL2_acceptor_site which appends the SL8 RNA leader sequence to the 5' end of an mRNA. SL8 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6948162	SOFA	SOFA	sequence	10	SO	region	SL8_acceptor_site
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001753	"A SL2_acceptor_site which appends the SL8 RNA leader sequence to the 5' end of an mRNA. SL8 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6699473	SOFA	SOFA	sequence	9	SO	biological_region	SL8_acceptor_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001753	"A SL2_acceptor_site which appends the SL8 RNA leader sequence to the 5' end of an mRNA. SL8 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	7085883	SOFA	SOFA	sequence	11	SO	sequence_feature	SL8_acceptor_site
SO:0001754	\N	\N	"A SL2_acceptor_site which appends the SL9 RNA leader sequence to the 5' end of an mRNA. SL9 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	SO:0001754	"A SL2_acceptor_site which appends the SL9 RNA leader sequence to the 5' end of an mRNA. SL9 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	46619	\N	\N	sequence	0	SO	SL9_acceptor_site	SL9_acceptor_site
SO:0000709	SO:0001754	\N	"A trans_splicing_acceptor_site which appends the 22nt SL2 RNA leader sequence to the 5' end of mRNAs. SL2 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	SO:0001754	"A SL2_acceptor_site which appends the SL9 RNA leader sequence to the 5' end of an mRNA. SL9 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	491395	\N	\N	sequence	1	SO	SL2_acceptor_site	SL9_acceptor_site
SO:0000706	SO:0000709	\N	"The 3' splice site of the acceptor primary transcript." [SO:ke]	SO:0001754	"A SL2_acceptor_site which appends the SL9 RNA leader sequence to the 5' end of an mRNA. SL9 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	1074011	\N	SOFA	sequence	2	SO	trans_splice_acceptor_site	SL9_acceptor_site
SO:0001420	SO:0000706	\N	"Primary transcript region bordering trans-splice junction." [SO:ke]	SO:0001754	"A SL2_acceptor_site which appends the SL9 RNA leader sequence to the 5' end of an mRNA. SL9 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	1905138	SOFA	SOFA	sequence	3	SO	trans_splice_site	SL9_acceptor_site
SO:0000162	SO:0001420	\N	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	SO:0001754	"A SL2_acceptor_site which appends the SL9 RNA leader sequence to the 5' end of an mRNA. SL9 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	2929577	SOFA	SOFA	sequence	4	SO	splice_site	SL9_acceptor_site
SO:0000835	SO:0000162	\N	"A part of a primary transcript." [SO:ke]	SO:0001754	"A SL2_acceptor_site which appends the SL9 RNA leader sequence to the 5' end of an mRNA. SL9 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4002663	SOFA	SOFA	sequence	5	SO	primary_transcript_region	SL9_acceptor_site
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001754	"A SL2_acceptor_site which appends the SL9 RNA leader sequence to the 5' end of an mRNA. SL9 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4966910	SOFA	SOFA	sequence	6	SO	primary_transcript	SL9_acceptor_site
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0001754	"A SL2_acceptor_site which appends the SL9 RNA leader sequence to the 5' end of an mRNA. SL9 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4966911	SOFA	SOFA	sequence	6	SO	transcript_region	SL9_acceptor_site
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001754	"A SL2_acceptor_site which appends the SL9 RNA leader sequence to the 5' end of an mRNA. SL9 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	5741492	SOFA	SOFA	sequence	7	SO	transcript	SL9_acceptor_site
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001754	"A SL2_acceptor_site which appends the SL9 RNA leader sequence to the 5' end of an mRNA. SL9 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	5741493	SOFA	SOFA	sequence	7	SO	transcript	SL9_acceptor_site
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001754	"A SL2_acceptor_site which appends the SL9 RNA leader sequence to the 5' end of an mRNA. SL9 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	5741494	SOFA	SOFA	sequence	7	SO	biological_region	SL9_acceptor_site
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001754	"A SL2_acceptor_site which appends the SL9 RNA leader sequence to the 5' end of an mRNA. SL9 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6311222	SOFA	SOFA	sequence	8	SO	gene_member_region	SL9_acceptor_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001754	"A SL2_acceptor_site which appends the SL9 RNA leader sequence to the 5' end of an mRNA. SL9 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6948163	SOFA	SOFA	sequence	10	SO	region	SL9_acceptor_site
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001754	"A SL2_acceptor_site which appends the SL9 RNA leader sequence to the 5' end of an mRNA. SL9 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6699475	SOFA	SOFA	sequence	9	SO	biological_region	SL9_acceptor_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001754	"A SL2_acceptor_site which appends the SL9 RNA leader sequence to the 5' end of an mRNA. SL9 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	7085884	SOFA	SOFA	sequence	11	SO	sequence_feature	SL9_acceptor_site
SO:0001755	\N	\N	"A SL2_acceptor_site which appends the SL10 RNA leader sequence to the 5' end of an mRNA. SL10 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	SO:0001755	"A SL2_acceptor_site which appends the SL10 RNA leader sequence to the 5' end of an mRNA. SL10 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	46620	\N	\N	sequence	0	SO	SL10_acceptor_site	SL10_acceptor_site
SO:0000709	SO:0001755	\N	"A trans_splicing_acceptor_site which appends the 22nt SL2 RNA leader sequence to the 5' end of mRNAs. SL2 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	SO:0001755	"A SL2_acceptor_site which appends the SL10 RNA leader sequence to the 5' end of an mRNA. SL10 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	491396	\N	\N	sequence	1	SO	SL2_acceptor_site	SL10_acceptor_site
SO:0000706	SO:0000709	\N	"The 3' splice site of the acceptor primary transcript." [SO:ke]	SO:0001755	"A SL2_acceptor_site which appends the SL10 RNA leader sequence to the 5' end of an mRNA. SL10 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	1074012	\N	SOFA	sequence	2	SO	trans_splice_acceptor_site	SL10_acceptor_site
SO:0001420	SO:0000706	\N	"Primary transcript region bordering trans-splice junction." [SO:ke]	SO:0001755	"A SL2_acceptor_site which appends the SL10 RNA leader sequence to the 5' end of an mRNA. SL10 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	1905139	SOFA	SOFA	sequence	3	SO	trans_splice_site	SL10_acceptor_site
SO:0000162	SO:0001420	\N	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	SO:0001755	"A SL2_acceptor_site which appends the SL10 RNA leader sequence to the 5' end of an mRNA. SL10 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	2929578	SOFA	SOFA	sequence	4	SO	splice_site	SL10_acceptor_site
SO:0000835	SO:0000162	\N	"A part of a primary transcript." [SO:ke]	SO:0001755	"A SL2_acceptor_site which appends the SL10 RNA leader sequence to the 5' end of an mRNA. SL10 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4002664	SOFA	SOFA	sequence	5	SO	primary_transcript_region	SL10_acceptor_site
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001755	"A SL2_acceptor_site which appends the SL10 RNA leader sequence to the 5' end of an mRNA. SL10 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4966912	SOFA	SOFA	sequence	6	SO	primary_transcript	SL10_acceptor_site
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0001755	"A SL2_acceptor_site which appends the SL10 RNA leader sequence to the 5' end of an mRNA. SL10 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4966913	SOFA	SOFA	sequence	6	SO	transcript_region	SL10_acceptor_site
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001755	"A SL2_acceptor_site which appends the SL10 RNA leader sequence to the 5' end of an mRNA. SL10 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	5741495	SOFA	SOFA	sequence	7	SO	transcript	SL10_acceptor_site
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001755	"A SL2_acceptor_site which appends the SL10 RNA leader sequence to the 5' end of an mRNA. SL10 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	5741496	SOFA	SOFA	sequence	7	SO	transcript	SL10_acceptor_site
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001755	"A SL2_acceptor_site which appends the SL10 RNA leader sequence to the 5' end of an mRNA. SL10 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	5741497	SOFA	SOFA	sequence	7	SO	biological_region	SL10_acceptor_site
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001755	"A SL2_acceptor_site which appends the SL10 RNA leader sequence to the 5' end of an mRNA. SL10 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6311224	SOFA	SOFA	sequence	8	SO	gene_member_region	SL10_acceptor_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001755	"A SL2_acceptor_site which appends the SL10 RNA leader sequence to the 5' end of an mRNA. SL10 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6948164	SOFA	SOFA	sequence	10	SO	region	SL10_acceptor_site
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001755	"A SL2_acceptor_site which appends the SL10 RNA leader sequence to the 5' end of an mRNA. SL10 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6699477	SOFA	SOFA	sequence	9	SO	biological_region	SL10_acceptor_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001755	"A SL2_acceptor_site which appends the SL10 RNA leader sequence to the 5' end of an mRNA. SL10 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	7085885	SOFA	SOFA	sequence	11	SO	sequence_feature	SL10_acceptor_site
SO:0001756	\N	\N	"A SL2_acceptor_site which appends the SL11 RNA leader sequence to the 5' end of an mRNA. SL11 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	SO:0001756	"A SL2_acceptor_site which appends the SL11 RNA leader sequence to the 5' end of an mRNA. SL11 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	46621	\N	\N	sequence	0	SO	SL11_acceptor_site	SL11_acceptor_site
SO:0000709	SO:0001756	\N	"A trans_splicing_acceptor_site which appends the 22nt SL2 RNA leader sequence to the 5' end of mRNAs. SL2 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	SO:0001756	"A SL2_acceptor_site which appends the SL11 RNA leader sequence to the 5' end of an mRNA. SL11 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	491397	\N	\N	sequence	1	SO	SL2_acceptor_site	SL11_acceptor_site
SO:0000706	SO:0000709	\N	"The 3' splice site of the acceptor primary transcript." [SO:ke]	SO:0001756	"A SL2_acceptor_site which appends the SL11 RNA leader sequence to the 5' end of an mRNA. SL11 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	1074013	\N	SOFA	sequence	2	SO	trans_splice_acceptor_site	SL11_acceptor_site
SO:0001420	SO:0000706	\N	"Primary transcript region bordering trans-splice junction." [SO:ke]	SO:0001756	"A SL2_acceptor_site which appends the SL11 RNA leader sequence to the 5' end of an mRNA. SL11 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	1905140	SOFA	SOFA	sequence	3	SO	trans_splice_site	SL11_acceptor_site
SO:0000162	SO:0001420	\N	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	SO:0001756	"A SL2_acceptor_site which appends the SL11 RNA leader sequence to the 5' end of an mRNA. SL11 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	2929579	SOFA	SOFA	sequence	4	SO	splice_site	SL11_acceptor_site
SO:0000835	SO:0000162	\N	"A part of a primary transcript." [SO:ke]	SO:0001756	"A SL2_acceptor_site which appends the SL11 RNA leader sequence to the 5' end of an mRNA. SL11 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4002665	SOFA	SOFA	sequence	5	SO	primary_transcript_region	SL11_acceptor_site
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001756	"A SL2_acceptor_site which appends the SL11 RNA leader sequence to the 5' end of an mRNA. SL11 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4966914	SOFA	SOFA	sequence	6	SO	primary_transcript	SL11_acceptor_site
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0001756	"A SL2_acceptor_site which appends the SL11 RNA leader sequence to the 5' end of an mRNA. SL11 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4966915	SOFA	SOFA	sequence	6	SO	transcript_region	SL11_acceptor_site
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001756	"A SL2_acceptor_site which appends the SL11 RNA leader sequence to the 5' end of an mRNA. SL11 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	5741498	SOFA	SOFA	sequence	7	SO	transcript	SL11_acceptor_site
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001756	"A SL2_acceptor_site which appends the SL11 RNA leader sequence to the 5' end of an mRNA. SL11 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	5741499	SOFA	SOFA	sequence	7	SO	transcript	SL11_acceptor_site
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001756	"A SL2_acceptor_site which appends the SL11 RNA leader sequence to the 5' end of an mRNA. SL11 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	5741500	SOFA	SOFA	sequence	7	SO	biological_region	SL11_acceptor_site
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001756	"A SL2_acceptor_site which appends the SL11 RNA leader sequence to the 5' end of an mRNA. SL11 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6311226	SOFA	SOFA	sequence	8	SO	gene_member_region	SL11_acceptor_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001756	"A SL2_acceptor_site which appends the SL11 RNA leader sequence to the 5' end of an mRNA. SL11 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6948165	SOFA	SOFA	sequence	10	SO	region	SL11_acceptor_site
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001756	"A SL2_acceptor_site which appends the SL11 RNA leader sequence to the 5' end of an mRNA. SL11 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6699479	SOFA	SOFA	sequence	9	SO	biological_region	SL11_acceptor_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001756	"A SL2_acceptor_site which appends the SL11 RNA leader sequence to the 5' end of an mRNA. SL11 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	7085886	SOFA	SOFA	sequence	11	SO	sequence_feature	SL11_acceptor_site
SO:0001757	\N	\N	"A SL2_acceptor_site which appends the SL12 RNA leader sequence to the 5' end of an mRNA. SL12 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	SO:0001757	"A SL2_acceptor_site which appends the SL12 RNA leader sequence to the 5' end of an mRNA. SL12 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	46622	\N	\N	sequence	0	SO	SL12_acceptor_site	SL12_acceptor_site
SO:0000709	SO:0001757	\N	"A trans_splicing_acceptor_site which appends the 22nt SL2 RNA leader sequence to the 5' end of mRNAs. SL2 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	SO:0001757	"A SL2_acceptor_site which appends the SL12 RNA leader sequence to the 5' end of an mRNA. SL12 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	491398	\N	\N	sequence	1	SO	SL2_acceptor_site	SL12_acceptor_site
SO:0000706	SO:0000709	\N	"The 3' splice site of the acceptor primary transcript." [SO:ke]	SO:0001757	"A SL2_acceptor_site which appends the SL12 RNA leader sequence to the 5' end of an mRNA. SL12 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	1074014	\N	SOFA	sequence	2	SO	trans_splice_acceptor_site	SL12_acceptor_site
SO:0001420	SO:0000706	\N	"Primary transcript region bordering trans-splice junction." [SO:ke]	SO:0001757	"A SL2_acceptor_site which appends the SL12 RNA leader sequence to the 5' end of an mRNA. SL12 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	1905141	SOFA	SOFA	sequence	3	SO	trans_splice_site	SL12_acceptor_site
SO:0000162	SO:0001420	\N	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	SO:0001757	"A SL2_acceptor_site which appends the SL12 RNA leader sequence to the 5' end of an mRNA. SL12 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	2929580	SOFA	SOFA	sequence	4	SO	splice_site	SL12_acceptor_site
SO:0000835	SO:0000162	\N	"A part of a primary transcript." [SO:ke]	SO:0001757	"A SL2_acceptor_site which appends the SL12 RNA leader sequence to the 5' end of an mRNA. SL12 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4002666	SOFA	SOFA	sequence	5	SO	primary_transcript_region	SL12_acceptor_site
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001757	"A SL2_acceptor_site which appends the SL12 RNA leader sequence to the 5' end of an mRNA. SL12 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4966916	SOFA	SOFA	sequence	6	SO	primary_transcript	SL12_acceptor_site
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0001757	"A SL2_acceptor_site which appends the SL12 RNA leader sequence to the 5' end of an mRNA. SL12 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	4966917	SOFA	SOFA	sequence	6	SO	transcript_region	SL12_acceptor_site
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001757	"A SL2_acceptor_site which appends the SL12 RNA leader sequence to the 5' end of an mRNA. SL12 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	5741501	SOFA	SOFA	sequence	7	SO	transcript	SL12_acceptor_site
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001757	"A SL2_acceptor_site which appends the SL12 RNA leader sequence to the 5' end of an mRNA. SL12 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	5741502	SOFA	SOFA	sequence	7	SO	transcript	SL12_acceptor_site
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001757	"A SL2_acceptor_site which appends the SL12 RNA leader sequence to the 5' end of an mRNA. SL12 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	5741503	SOFA	SOFA	sequence	7	SO	biological_region	SL12_acceptor_site
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001757	"A SL2_acceptor_site which appends the SL12 RNA leader sequence to the 5' end of an mRNA. SL12 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6311228	SOFA	SOFA	sequence	8	SO	gene_member_region	SL12_acceptor_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001757	"A SL2_acceptor_site which appends the SL12 RNA leader sequence to the 5' end of an mRNA. SL12 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6948166	SOFA	SOFA	sequence	10	SO	region	SL12_acceptor_site
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001757	"A SL2_acceptor_site which appends the SL12 RNA leader sequence to the 5' end of an mRNA. SL12 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	6699481	SOFA	SOFA	sequence	9	SO	biological_region	SL12_acceptor_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001757	"A SL2_acceptor_site which appends the SL12 RNA leader sequence to the 5' end of an mRNA. SL12 acceptor sites occur in genes in internal segments of polycistronic transcripts." [SO:nlw]	7085887	SOFA	SOFA	sequence	11	SO	sequence_feature	SL12_acceptor_site
SO:0001758	\N	\N	"A pseudogene that arose via gene duplication. Generally duplicated pseudogenes have the same structure as the original gene, including intron-exon structure and some regulatory sequence." [http://en.wikipedia.org/wiki/Pseudogene]	SO:0001758	"A pseudogene that arose via gene duplication. Generally duplicated pseudogenes have the same structure as the original gene, including intron-exon structure and some regulatory sequence." [http://en.wikipedia.org/wiki/Pseudogene]	46623	\N	\N	sequence	0	SO	duplicated_pseudogene	duplicated_pseudogene
SO:0001760	SO:0001758	\N	"A pseudogene that arose from a means other than retrotransposition. A pseudogene created via genomic duplication of a functional protein-coding parent gene followed by accumulation of deleterious mutations." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, SO:ke]	SO:0001758	"A pseudogene that arose via gene duplication. Generally duplicated pseudogenes have the same structure as the original gene, including intron-exon structure and some regulatory sequence." [http://en.wikipedia.org/wiki/Pseudogene]	491399	\N	\N	sequence	1	SO	non_processed_pseudogene	duplicated_pseudogene
SO:0000336	SO:0001760	\N	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	SO:0001758	"A pseudogene that arose via gene duplication. Generally duplicated pseudogenes have the same structure as the original gene, including intron-exon structure and some regulatory sequence." [http://en.wikipedia.org/wiki/Pseudogene]	1074015	\N	SOFA	sequence	2	SO	pseudogene	duplicated_pseudogene
SO:0001411	SO:0000336	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001758	"A pseudogene that arose via gene duplication. Generally duplicated pseudogenes have the same structure as the original gene, including intron-exon structure and some regulatory sequence." [http://en.wikipedia.org/wiki/Pseudogene]	1905142	SOFA	SOFA	sequence	3	SO	biological_region	duplicated_pseudogene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001758	"A pseudogene that arose via gene duplication. Generally duplicated pseudogenes have the same structure as the original gene, including intron-exon structure and some regulatory sequence." [http://en.wikipedia.org/wiki/Pseudogene]	2929581	SOFA	SOFA	sequence	4	SO	region	duplicated_pseudogene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001758	"A pseudogene that arose via gene duplication. Generally duplicated pseudogenes have the same structure as the original gene, including intron-exon structure and some regulatory sequence." [http://en.wikipedia.org/wiki/Pseudogene]	4002667	SOFA	SOFA	sequence	5	SO	sequence_feature	duplicated_pseudogene
SO:0001759	\N	\N	"A pseudogene, deactivated from original state by mutation, fixed in a population,where the ortholog in a reference species such as mouse remains functional." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, http://en.wikipedia.org/wiki/Pseudogene, SO:ke]	SO:0001759	"A pseudogene, deactivated from original state by mutation, fixed in a population,where the ortholog in a reference species such as mouse remains functional." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, http://en.wikipedia.org/wiki/Pseudogene, SO:ke]	46624	\N	\N	sequence	0	SO	unitary_pseudogene	unitary_pseudogene
SO:0001760	SO:0001759	\N	"A pseudogene that arose from a means other than retrotransposition. A pseudogene created via genomic duplication of a functional protein-coding parent gene followed by accumulation of deleterious mutations." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, SO:ke]	SO:0001759	"A pseudogene, deactivated from original state by mutation, fixed in a population,where the ortholog in a reference species such as mouse remains functional." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, http://en.wikipedia.org/wiki/Pseudogene, SO:ke]	491400	\N	\N	sequence	1	SO	non_processed_pseudogene	unitary_pseudogene
SO:0000336	SO:0001760	\N	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	SO:0001759	"A pseudogene, deactivated from original state by mutation, fixed in a population,where the ortholog in a reference species such as mouse remains functional." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, http://en.wikipedia.org/wiki/Pseudogene, SO:ke]	1074016	\N	SOFA	sequence	2	SO	pseudogene	unitary_pseudogene
SO:0001411	SO:0000336	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001759	"A pseudogene, deactivated from original state by mutation, fixed in a population,where the ortholog in a reference species such as mouse remains functional." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, http://en.wikipedia.org/wiki/Pseudogene, SO:ke]	1905143	SOFA	SOFA	sequence	3	SO	biological_region	unitary_pseudogene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001759	"A pseudogene, deactivated from original state by mutation, fixed in a population,where the ortholog in a reference species such as mouse remains functional." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, http://en.wikipedia.org/wiki/Pseudogene, SO:ke]	2929582	SOFA	SOFA	sequence	4	SO	region	unitary_pseudogene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001759	"A pseudogene, deactivated from original state by mutation, fixed in a population,where the ortholog in a reference species such as mouse remains functional." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, http://en.wikipedia.org/wiki/Pseudogene, SO:ke]	4002668	SOFA	SOFA	sequence	5	SO	sequence_feature	unitary_pseudogene
SO:0001760	\N	\N	"A pseudogene that arose from a means other than retrotransposition. A pseudogene created via genomic duplication of a functional protein-coding parent gene followed by accumulation of deleterious mutations." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, SO:ke]	SO:0001760	"A pseudogene that arose from a means other than retrotransposition. A pseudogene created via genomic duplication of a functional protein-coding parent gene followed by accumulation of deleterious mutations." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, SO:ke]	46625	\N	\N	sequence	0	SO	non_processed_pseudogene	non_processed_pseudogene
SO:0000336	SO:0001760	\N	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	SO:0001760	"A pseudogene that arose from a means other than retrotransposition. A pseudogene created via genomic duplication of a functional protein-coding parent gene followed by accumulation of deleterious mutations." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, SO:ke]	491401	\N	SOFA	sequence	1	SO	pseudogene	non_processed_pseudogene
SO:0001411	SO:0000336	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001760	"A pseudogene that arose from a means other than retrotransposition. A pseudogene created via genomic duplication of a functional protein-coding parent gene followed by accumulation of deleterious mutations." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, SO:ke]	1074017	SOFA	SOFA	sequence	2	SO	biological_region	non_processed_pseudogene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001760	"A pseudogene that arose from a means other than retrotransposition. A pseudogene created via genomic duplication of a functional protein-coding parent gene followed by accumulation of deleterious mutations." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, SO:ke]	1905144	SOFA	SOFA	sequence	3	SO	region	non_processed_pseudogene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001760	"A pseudogene that arose from a means other than retrotransposition. A pseudogene created via genomic duplication of a functional protein-coding parent gene followed by accumulation of deleterious mutations." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, SO:ke]	2929583	SOFA	SOFA	sequence	4	SO	sequence_feature	non_processed_pseudogene
SO:0001761	\N	\N	"A dependent entity that inheres in a bearer, a sequence variant." [PMID:17597783, SO:ke]	SO:0001761	"A dependent entity that inheres in a bearer, a sequence variant." [PMID:17597783, SO:ke]	46626	\N	\N	sequence	0	SO	variant_quality	variant_quality
SO:0000400	SO:0001761	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001761	"A dependent entity that inheres in a bearer, a sequence variant." [PMID:17597783, SO:ke]	491402	\N	\N	sequence	1	SO	sequence_attribute	variant_quality
SO:0001762	\N	\N	"A quality inhering in a variant by virtue of its origin." [PMID:17597783, SO:ke]	SO:0001762	"A quality inhering in a variant by virtue of its origin." [PMID:17597783, SO:ke]	46627	\N	\N	sequence	0	SO	variant_origin	variant_origin
SO:0001761	SO:0001762	\N	"A dependent entity that inheres in a bearer, a sequence variant." [PMID:17597783, SO:ke]	SO:0001762	"A quality inhering in a variant by virtue of its origin." [PMID:17597783, SO:ke]	491403	\N	\N	sequence	1	SO	variant_quality	variant_origin
SO:0000400	SO:0001761	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001762	"A quality inhering in a variant by virtue of its origin." [PMID:17597783, SO:ke]	1074018	\N	\N	sequence	2	SO	sequence_attribute	variant_origin
SO:0001763	\N	\N	"A physical quality which inheres to the variant by virtue of the number instances of the variant within a population." [PMID:17597783, SO:ke]	SO:0001763	"A physical quality which inheres to the variant by virtue of the number instances of the variant within a population." [PMID:17597783, SO:ke]	46628	\N	\N	sequence	0	SO	variant_frequency	variant_frequency
SO:0001761	SO:0001763	\N	"A dependent entity that inheres in a bearer, a sequence variant." [PMID:17597783, SO:ke]	SO:0001763	"A physical quality which inheres to the variant by virtue of the number instances of the variant within a population." [PMID:17597783, SO:ke]	491404	\N	\N	sequence	1	SO	variant_quality	variant_frequency
SO:0000400	SO:0001761	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001763	"A physical quality which inheres to the variant by virtue of the number instances of the variant within a population." [PMID:17597783, SO:ke]	1074019	\N	\N	sequence	2	SO	sequence_attribute	variant_frequency
SO:0001764	\N	\N	"A physical quality which inheres to the variant by virtue of the number instances of the variant within a population." [SO:ke]	SO:0001764	"A physical quality which inheres to the variant by virtue of the number instances of the variant within a population." [SO:ke]	46629	\N	\N	sequence	0	SO	unique_variant	unique_variant
SO:0001763	SO:0001764	\N	"A physical quality which inheres to the variant by virtue of the number instances of the variant within a population." [PMID:17597783, SO:ke]	SO:0001764	"A physical quality which inheres to the variant by virtue of the number instances of the variant within a population." [SO:ke]	491405	\N	\N	sequence	1	SO	variant_frequency	unique_variant
SO:0001761	SO:0001763	\N	"A dependent entity that inheres in a bearer, a sequence variant." [PMID:17597783, SO:ke]	SO:0001764	"A physical quality which inheres to the variant by virtue of the number instances of the variant within a population." [SO:ke]	1074020	\N	\N	sequence	2	SO	variant_quality	unique_variant
SO:0000400	SO:0001761	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001764	"A physical quality which inheres to the variant by virtue of the number instances of the variant within a population." [SO:ke]	1905145	\N	\N	sequence	3	SO	sequence_attribute	unique_variant
SO:0001765	\N	\N	"" []	SO:0001765	"" []	46630	\N	\N	sequence	0	SO	rare_variant	rare_variant
SO:0001763	SO:0001765	\N	"A physical quality which inheres to the variant by virtue of the number instances of the variant within a population." [PMID:17597783, SO:ke]	SO:0001765	"" []	491406	\N	\N	sequence	1	SO	variant_frequency	rare_variant
SO:0001761	SO:0001763	\N	"A dependent entity that inheres in a bearer, a sequence variant." [PMID:17597783, SO:ke]	SO:0001765	"" []	1074021	\N	\N	sequence	2	SO	variant_quality	rare_variant
SO:0000400	SO:0001761	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001765	"" []	1905146	\N	\N	sequence	3	SO	sequence_attribute	rare_variant
SO:0001766	\N	\N	"" []	SO:0001766	"" []	46631	\N	\N	sequence	0	SO	polymorphic_variant	polymorphic_variant
SO:0001763	SO:0001766	\N	"A physical quality which inheres to the variant by virtue of the number instances of the variant within a population." [PMID:17597783, SO:ke]	SO:0001766	"" []	491407	\N	\N	sequence	1	SO	variant_frequency	polymorphic_variant
SO:0001761	SO:0001763	\N	"A dependent entity that inheres in a bearer, a sequence variant." [PMID:17597783, SO:ke]	SO:0001766	"" []	1074022	\N	\N	sequence	2	SO	variant_quality	polymorphic_variant
SO:0000400	SO:0001761	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001766	"" []	1905147	\N	\N	sequence	3	SO	sequence_attribute	polymorphic_variant
SO:0001767	\N	\N	"" []	SO:0001767	"" []	46632	\N	\N	sequence	0	SO	common_variant	common_variant
SO:0001763	SO:0001767	\N	"A physical quality which inheres to the variant by virtue of the number instances of the variant within a population." [PMID:17597783, SO:ke]	SO:0001767	"" []	491408	\N	\N	sequence	1	SO	variant_frequency	common_variant
SO:0001761	SO:0001763	\N	"A dependent entity that inheres in a bearer, a sequence variant." [PMID:17597783, SO:ke]	SO:0001767	"" []	1074023	\N	\N	sequence	2	SO	variant_quality	common_variant
SO:0000400	SO:0001761	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001767	"" []	1905148	\N	\N	sequence	3	SO	sequence_attribute	common_variant
SO:0001768	\N	\N	"" []	SO:0001768	"" []	46633	\N	\N	sequence	0	SO	fixed_variant	fixed_variant
SO:0001763	SO:0001768	\N	"A physical quality which inheres to the variant by virtue of the number instances of the variant within a population." [PMID:17597783, SO:ke]	SO:0001768	"" []	491409	\N	\N	sequence	1	SO	variant_frequency	fixed_variant
SO:0001761	SO:0001763	\N	"A dependent entity that inheres in a bearer, a sequence variant." [PMID:17597783, SO:ke]	SO:0001768	"" []	1074024	\N	\N	sequence	2	SO	variant_quality	fixed_variant
SO:0000400	SO:0001761	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001768	"" []	1905149	\N	\N	sequence	3	SO	sequence_attribute	fixed_variant
SO:0001769	\N	\N	"A quality inhering in a variant by virtue of its phenotype." [PMID:17597783, SO:ke]	SO:0001769	"A quality inhering in a variant by virtue of its phenotype." [PMID:17597783, SO:ke]	46634	\N	\N	sequence	0	SO	variant_phenotype	variant_phenotype
SO:0001761	SO:0001769	\N	"A dependent entity that inheres in a bearer, a sequence variant." [PMID:17597783, SO:ke]	SO:0001769	"A quality inhering in a variant by virtue of its phenotype." [PMID:17597783, SO:ke]	491410	\N	\N	sequence	1	SO	variant_quality	variant_phenotype
SO:0000400	SO:0001761	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001769	"A quality inhering in a variant by virtue of its phenotype." [PMID:17597783, SO:ke]	1074025	\N	\N	sequence	2	SO	sequence_attribute	variant_phenotype
SO:0001770	\N	\N	"" []	SO:0001770	"" []	46635	\N	\N	sequence	0	SO	benign_variant	benign_variant
SO:0001769	SO:0001770	\N	"A quality inhering in a variant by virtue of its phenotype." [PMID:17597783, SO:ke]	SO:0001770	"" []	491411	\N	\N	sequence	1	SO	variant_phenotype	benign_variant
SO:0001761	SO:0001769	\N	"A dependent entity that inheres in a bearer, a sequence variant." [PMID:17597783, SO:ke]	SO:0001770	"" []	1074026	\N	\N	sequence	2	SO	variant_quality	benign_variant
SO:0000400	SO:0001761	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001770	"" []	1905150	\N	\N	sequence	3	SO	sequence_attribute	benign_variant
SO:0001771	\N	\N	"" []	SO:0001771	"" []	46636	\N	\N	sequence	0	SO	disease_associated_variant	disease_associated_variant
SO:0001769	SO:0001771	\N	"A quality inhering in a variant by virtue of its phenotype." [PMID:17597783, SO:ke]	SO:0001771	"" []	491412	\N	\N	sequence	1	SO	variant_phenotype	disease_associated_variant
SO:0001761	SO:0001769	\N	"A dependent entity that inheres in a bearer, a sequence variant." [PMID:17597783, SO:ke]	SO:0001771	"" []	1074027	\N	\N	sequence	2	SO	variant_quality	disease_associated_variant
SO:0000400	SO:0001761	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001771	"" []	1905151	\N	\N	sequence	3	SO	sequence_attribute	disease_associated_variant
SO:0001772	\N	\N	"" []	SO:0001772	"" []	46637	\N	\N	sequence	0	SO	disease_causing_variant	disease_causing_variant
SO:0001769	SO:0001772	\N	"A quality inhering in a variant by virtue of its phenotype." [PMID:17597783, SO:ke]	SO:0001772	"" []	491413	\N	\N	sequence	1	SO	variant_phenotype	disease_causing_variant
SO:0001761	SO:0001769	\N	"A dependent entity that inheres in a bearer, a sequence variant." [PMID:17597783, SO:ke]	SO:0001772	"" []	1074028	\N	\N	sequence	2	SO	variant_quality	disease_causing_variant
SO:0000400	SO:0001761	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001772	"" []	1905152	\N	\N	sequence	3	SO	sequence_attribute	disease_causing_variant
SO:0001773	\N	\N	"" []	SO:0001773	"" []	46638	\N	\N	sequence	0	SO	lethal_variant	lethal_variant
SO:0001536	SO:0001773	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001773	"" []	491414	\N	\N	sequence	1	SO	functional_variant	lethal_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001773	"" []	1074029	\N	\N	sequence	2	SO	sequence_variant	lethal_variant
SO:0001774	\N	\N	"" []	SO:0001774	"" []	46639	\N	\N	sequence	0	SO	quantitative_variant	quantitative_variant
SO:0001769	SO:0001774	\N	"A quality inhering in a variant by virtue of its phenotype." [PMID:17597783, SO:ke]	SO:0001774	"" []	491415	\N	\N	sequence	1	SO	variant_phenotype	quantitative_variant
SO:0001761	SO:0001769	\N	"A dependent entity that inheres in a bearer, a sequence variant." [PMID:17597783, SO:ke]	SO:0001774	"" []	1074030	\N	\N	sequence	2	SO	variant_quality	quantitative_variant
SO:0000400	SO:0001761	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001774	"" []	1905153	\N	\N	sequence	3	SO	sequence_attribute	quantitative_variant
SO:0001775	\N	\N	"" []	SO:0001775	"" []	46640	\N	\N	sequence	0	SO	maternal_variant	maternal_variant
SO:0001762	SO:0001775	\N	"A quality inhering in a variant by virtue of its origin." [PMID:17597783, SO:ke]	SO:0001775	"" []	491416	\N	\N	sequence	1	SO	variant_origin	maternal_variant
SO:0001761	SO:0001762	\N	"A dependent entity that inheres in a bearer, a sequence variant." [PMID:17597783, SO:ke]	SO:0001775	"" []	1074031	\N	\N	sequence	2	SO	variant_quality	maternal_variant
SO:0000400	SO:0001761	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001775	"" []	1905154	\N	\N	sequence	3	SO	sequence_attribute	maternal_variant
SO:0001776	\N	\N	"" []	SO:0001776	"" []	46641	\N	\N	sequence	0	SO	paternal_variant	paternal_variant
SO:0001762	SO:0001776	\N	"A quality inhering in a variant by virtue of its origin." [PMID:17597783, SO:ke]	SO:0001776	"" []	491417	\N	\N	sequence	1	SO	variant_origin	paternal_variant
SO:0001761	SO:0001762	\N	"A dependent entity that inheres in a bearer, a sequence variant." [PMID:17597783, SO:ke]	SO:0001776	"" []	1074032	\N	\N	sequence	2	SO	variant_quality	paternal_variant
SO:0000400	SO:0001761	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001776	"" []	1905155	\N	\N	sequence	3	SO	sequence_attribute	paternal_variant
SO:0001777	\N	\N	"" []	SO:0001777	"" []	46642	\N	\N	sequence	0	SO	somatic_variant	somatic_variant
SO:0001762	SO:0001777	\N	"A quality inhering in a variant by virtue of its origin." [PMID:17597783, SO:ke]	SO:0001777	"" []	491418	\N	\N	sequence	1	SO	variant_origin	somatic_variant
SO:0001761	SO:0001762	\N	"A dependent entity that inheres in a bearer, a sequence variant." [PMID:17597783, SO:ke]	SO:0001777	"" []	1074033	\N	\N	sequence	2	SO	variant_quality	somatic_variant
SO:0000400	SO:0001761	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001777	"" []	1905156	\N	\N	sequence	3	SO	sequence_attribute	somatic_variant
SO:0001778	\N	\N	"" []	SO:0001778	"" []	46643	\N	\N	sequence	0	SO	germline_variant	germline_variant
SO:0001762	SO:0001778	\N	"A quality inhering in a variant by virtue of its origin." [PMID:17597783, SO:ke]	SO:0001778	"" []	491419	\N	\N	sequence	1	SO	variant_origin	germline_variant
SO:0001761	SO:0001762	\N	"A dependent entity that inheres in a bearer, a sequence variant." [PMID:17597783, SO:ke]	SO:0001778	"" []	1074034	\N	\N	sequence	2	SO	variant_quality	germline_variant
SO:0000400	SO:0001761	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001778	"" []	1905157	\N	\N	sequence	3	SO	sequence_attribute	germline_variant
SO:0001779	\N	\N	"" []	SO:0001779	"" []	46644	\N	\N	sequence	0	SO	pedigree_specific_variant	pedigree_specific_variant
SO:0001762	SO:0001779	\N	"A quality inhering in a variant by virtue of its origin." [PMID:17597783, SO:ke]	SO:0001779	"" []	491420	\N	\N	sequence	1	SO	variant_origin	pedigree_specific_variant
SO:0001761	SO:0001762	\N	"A dependent entity that inheres in a bearer, a sequence variant." [PMID:17597783, SO:ke]	SO:0001779	"" []	1074035	\N	\N	sequence	2	SO	variant_quality	pedigree_specific_variant
SO:0000400	SO:0001761	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001779	"" []	1905158	\N	\N	sequence	3	SO	sequence_attribute	pedigree_specific_variant
SO:0001780	\N	\N	"" []	SO:0001780	"" []	46645	\N	\N	sequence	0	SO	population_specific_variant	population_specific_variant
SO:0001762	SO:0001780	\N	"A quality inhering in a variant by virtue of its origin." [PMID:17597783, SO:ke]	SO:0001780	"" []	491421	\N	\N	sequence	1	SO	variant_origin	population_specific_variant
SO:0001761	SO:0001762	\N	"A dependent entity that inheres in a bearer, a sequence variant." [PMID:17597783, SO:ke]	SO:0001780	"" []	1074036	\N	\N	sequence	2	SO	variant_quality	population_specific_variant
SO:0000400	SO:0001761	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001780	"" []	1905159	\N	\N	sequence	3	SO	sequence_attribute	population_specific_variant
SO:0001781	\N	\N	"" []	SO:0001781	"" []	46646	\N	\N	sequence	0	SO	de_novo_variant	de_novo_variant
SO:0001762	SO:0001781	\N	"A quality inhering in a variant by virtue of its origin." [PMID:17597783, SO:ke]	SO:0001781	"" []	491422	\N	\N	sequence	1	SO	variant_origin	de_novo_variant
SO:0001761	SO:0001762	\N	"A dependent entity that inheres in a bearer, a sequence variant." [PMID:17597783, SO:ke]	SO:0001781	"" []	1074037	\N	\N	sequence	2	SO	variant_quality	de_novo_variant
SO:0000400	SO:0001761	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001781	"" []	1905160	\N	\N	sequence	3	SO	sequence_attribute	de_novo_variant
SO:0001782	\N	\N	"A sequence variant located within a transcription factor binding site." [EBI:fc]	SO:0001782	"A sequence variant located within a transcription factor binding site." [EBI:fc]	46647	\N	\N	sequence	0	SO	TF_binding_site_variant	TF_binding_site_variant
SO:0001566	SO:0001782	\N	"A sequence variant located within a regulatory region." [SO:ke]	SO:0001782	"A sequence variant located within a transcription factor binding site." [EBI:fc]	491423	\N	\N	sequence	1	SO	regulatory_region_variant	TF_binding_site_variant
SO:0001878	SO:0001566	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001782	"A sequence variant located within a transcription factor binding site." [EBI:fc]	1074038	\N	\N	sequence	2	SO	feature_variant	TF_binding_site_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001782	"A sequence variant located within a transcription factor binding site." [EBI:fc]	1905161	\N	\N	sequence	3	SO	structural_variant	TF_binding_site_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001782	"A sequence variant located within a transcription factor binding site." [EBI:fc]	2929584	\N	\N	sequence	4	SO	sequence_variant	TF_binding_site_variant
SO:0001784	\N	DBVAR	"A structural sequence alteration or rearrangement encompassing one or more genome fragments, with 4 or more breakpoints." [FB:reference_manual, NCBI:th, SO:ke]	SO:0001784	"A structural sequence alteration or rearrangement encompassing one or more genome fragments, with 4 or more breakpoints." [FB:reference_manual, NCBI:th, SO:ke]	46648	\N	DBVAR	sequence	0	SO	complex_structural_alteration	complex_structural_alteration
SO:0001785	SO:0001784	DBVAR	"" []	SO:0001784	"A structural sequence alteration or rearrangement encompassing one or more genome fragments, with 4 or more breakpoints." [FB:reference_manual, NCBI:th, SO:ke]	491424	DBVAR	DBVAR	sequence	1	SO	structural_alteration	complex_structural_alteration
SO:1000183	SO:0001784	DBVAR	"" []	SO:0001784	"A structural sequence alteration or rearrangement encompassing one or more genome fragments, with 4 or more breakpoints." [FB:reference_manual, NCBI:th, SO:ke]	491425	DBVAR	\N	sequence	1	SO	chromosome_structure_variation	complex_structural_alteration
SO:0001059	SO:0001785	DBVAR	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0001784	"A structural sequence alteration or rearrangement encompassing one or more genome fragments, with 4 or more breakpoints." [FB:reference_manual, NCBI:th, SO:ke]	1074039	DBVAR	SOFA	sequence	2	SO	sequence_alteration	complex_structural_alteration
SO:0000240	SO:1000183	DBVAR	"" []	SO:0001784	"A structural sequence alteration or rearrangement encompassing one or more genome fragments, with 4 or more breakpoints." [FB:reference_manual, NCBI:th, SO:ke]	1074040	\N	\N	sequence	2	SO	chromosome_variation	complex_structural_alteration
SO:0002072	SO:0001059	DBVAR	"" []	SO:0001784	"A structural sequence alteration or rearrangement encompassing one or more genome fragments, with 4 or more breakpoints." [FB:reference_manual, NCBI:th, SO:ke]	1905162	SOFA	\N	sequence	3	SO	sequence_comparison	complex_structural_alteration
SO:0001507	SO:0000240	DBVAR	"A collection of one or more sequences of an individual." [SO:ke]	SO:0001784	"A structural sequence alteration or rearrangement encompassing one or more genome fragments, with 4 or more breakpoints." [FB:reference_manual, NCBI:th, SO:ke]	1905163	\N	\N	sequence	3	SO	variant_collection	complex_structural_alteration
SO:0001524	SO:0000240	DBVAR	"" []	SO:0001784	"A structural sequence alteration or rearrangement encompassing one or more genome fragments, with 4 or more breakpoints." [FB:reference_manual, NCBI:th, SO:ke]	1905164	\N	\N	sequence	3	SO	chromosomally_aberrant_genome	complex_structural_alteration
SO:0000110	SO:0002072	DBVAR	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001784	"A structural sequence alteration or rearrangement encompassing one or more genome fragments, with 4 or more breakpoints." [FB:reference_manual, NCBI:th, SO:ke]	2929585	\N	SOFA	sequence	4	SO	sequence_feature	complex_structural_alteration
SO:0001260	SO:0001507	DBVAR	"A collection of discontinuous sequences." [SO:ke]	SO:0001784	"A structural sequence alteration or rearrangement encompassing one or more genome fragments, with 4 or more breakpoints." [FB:reference_manual, NCBI:th, SO:ke]	2929586	\N	\N	sequence	4	SO	sequence_collection	complex_structural_alteration
SO:0001506	SO:0001524	DBVAR	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0001784	"A structural sequence alteration or rearrangement encompassing one or more genome fragments, with 4 or more breakpoints." [FB:reference_manual, NCBI:th, SO:ke]	2929587	\N	\N	sequence	4	SO	variant_genome	complex_structural_alteration
SO:0001026	SO:0001506	DBVAR	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0001784	"A structural sequence alteration or rearrangement encompassing one or more genome fragments, with 4 or more breakpoints." [FB:reference_manual, NCBI:th, SO:ke]	4002669	\N	\N	sequence	5	SO	genome	complex_structural_alteration
SO:0001260	SO:0001026	DBVAR	"A collection of discontinuous sequences." [SO:ke]	SO:0001784	"A structural sequence alteration or rearrangement encompassing one or more genome fragments, with 4 or more breakpoints." [FB:reference_manual, NCBI:th, SO:ke]	4966918	\N	\N	sequence	6	SO	sequence_collection	complex_structural_alteration
SO:0001785	\N	DBVAR	"" []	SO:0001785	"" []	46649	\N	DBVAR	sequence	0	SO	structural_alteration	structural_alteration
SO:0001059	SO:0001785	DBVAR	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0001785	"" []	491426	DBVAR	SOFA	sequence	1	SO	sequence_alteration	structural_alteration
SO:0002072	SO:0001059	DBVAR	"" []	SO:0001785	"" []	1074041	SOFA	\N	sequence	2	SO	sequence_comparison	structural_alteration
SO:0000110	SO:0002072	DBVAR	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001785	"" []	1905165	\N	SOFA	sequence	3	SO	sequence_feature	structural_alteration
SO:0001786	\N	DBVAR	"A functional variant whereby the sequence alteration causes a loss of function of one allele of a gene." [SO:ke]	SO:0001786	"A functional variant whereby the sequence alteration causes a loss of function of one allele of a gene." [SO:ke]	46650	\N	DBVAR	sequence	0	SO	loss_of_heterozygosity	loss_of_heterozygosity
SO:0001536	SO:0001786	DBVAR	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001786	"A functional variant whereby the sequence alteration causes a loss of function of one allele of a gene." [SO:ke]	491427	DBVAR	\N	sequence	1	SO	functional_variant	loss_of_heterozygosity
SO:0001060	SO:0001536	DBVAR	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001786	"A functional variant whereby the sequence alteration causes a loss of function of one allele of a gene." [SO:ke]	1074042	\N	\N	sequence	2	SO	sequence_variant	loss_of_heterozygosity
SO:0001787	\N	\N	"A sequence variant that causes a change at the 5th base pair after the start of the intron in the orientation of the transcript." [EBI:gr]	SO:0001787	"A sequence variant that causes a change at the 5th base pair after the start of the intron in the orientation of the transcript." [EBI:gr]	46651	\N	\N	sequence	0	SO	splice_donor_5th_base_variant	splice_donor_5th_base_variant
SO:0001629	SO:0001787	\N	"A sequence variant that changes the first two or last two bases of an intron, or the 5th base from the start of the intron in the orientation of the transcript." [http://ensembl.org/info/docs/variation/index.html]	SO:0001787	"A sequence variant that causes a change at the 5th base pair after the start of the intron in the orientation of the transcript." [EBI:gr]	491428	\N	\N	sequence	1	SO	splice_site_variant	splice_donor_5th_base_variant
SO:0001568	SO:0001629	\N	"A sequence variant that changes the process of splicing." [SO:ke]	SO:0001787	"A sequence variant that causes a change at the 5th base pair after the start of the intron in the orientation of the transcript." [EBI:gr]	1074043	\N	\N	sequence	2	SO	splicing_variant	splice_donor_5th_base_variant
SO:0001627	SO:0001629	\N	"A transcript variant occurring within an intron." [SO:ke]	SO:0001787	"A sequence variant that causes a change at the 5th base pair after the start of the intron in the orientation of the transcript." [EBI:gr]	1074044	\N	\N	sequence	2	SO	intron_variant	splice_donor_5th_base_variant
SO:0001576	SO:0001568	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001787	"A sequence variant that causes a change at the 5th base pair after the start of the intron in the orientation of the transcript." [EBI:gr]	1905166	\N	\N	sequence	3	SO	transcript_variant	splice_donor_5th_base_variant
SO:0001576	SO:0001627	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001787	"A sequence variant that causes a change at the 5th base pair after the start of the intron in the orientation of the transcript." [EBI:gr]	1905167	\N	\N	sequence	3	SO	transcript_variant	splice_donor_5th_base_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001787	"A sequence variant that causes a change at the 5th base pair after the start of the intron in the orientation of the transcript." [EBI:gr]	2929588	\N	\N	sequence	4	SO	gene_variant	splice_donor_5th_base_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001787	"A sequence variant that causes a change at the 5th base pair after the start of the intron in the orientation of the transcript." [EBI:gr]	4002670	\N	\N	sequence	5	SO	feature_variant	splice_donor_5th_base_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001787	"A sequence variant that causes a change at the 5th base pair after the start of the intron in the orientation of the transcript." [EBI:gr]	4966919	\N	\N	sequence	6	SO	structural_variant	splice_donor_5th_base_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001787	"A sequence variant that causes a change at the 5th base pair after the start of the intron in the orientation of the transcript." [EBI:gr]	5741504	\N	\N	sequence	7	SO	sequence_variant	splice_donor_5th_base_variant
SO:0001788	\N	\N	"An U-box is a conserved T-rich region upstream of a retroviral polypurine tract that is involved in PPT primer creation during reverse transcription." [PMID:10556309, PMID:11577982, PMID:9649446]	SO:0001788	"An U-box is a conserved T-rich region upstream of a retroviral polypurine tract that is involved in PPT primer creation during reverse transcription." [PMID:10556309, PMID:11577982, PMID:9649446]	46652	\N	\N	sequence	0	SO	U_box	U_box
SO:0000186	SO:0001788	\N	"A retrotransposon flanked by long terminal repeat sequences." [SO:ke]	SO:0001788	"An U-box is a conserved T-rich region upstream of a retroviral polypurine tract that is involved in PPT primer creation during reverse transcription." [PMID:10556309, PMID:11577982, PMID:9649446]	491429	\N	\N	sequence	1	SO	LTR_retrotransposon	U_box
SO:0000330	SO:0001788	\N	"Region of sequence similarity by descent from a common ancestor." [SO:ke]	SO:0001788	"An U-box is a conserved T-rich region upstream of a retroviral polypurine tract that is involved in PPT primer creation during reverse transcription." [PMID:10556309, PMID:11577982, PMID:9649446]	491430	\N	SOFA	sequence	1	SO	conserved_region	U_box
SO:0000180	SO:0000186	\N	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	SO:0001788	"An U-box is a conserved T-rich region upstream of a retroviral polypurine tract that is involved in PPT primer creation during reverse transcription." [PMID:10556309, PMID:11577982, PMID:9649446]	1074045	\N	\N	sequence	2	SO	retrotransposon	U_box
SO:0001410	SO:0000330	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001788	"An U-box is a conserved T-rich region upstream of a retroviral polypurine tract that is involved in PPT primer creation during reverse transcription." [PMID:10556309, PMID:11577982, PMID:9649446]	1074046	SOFA	SOFA	sequence	2	SO	experimental_feature	U_box
SO:0000101	SO:0000180	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0001788	"An U-box is a conserved T-rich region upstream of a retroviral polypurine tract that is involved in PPT primer creation during reverse transcription." [PMID:10556309, PMID:11577982, PMID:9649446]	1905168	\N	SOFA	sequence	3	SO	transposable_element	U_box
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001788	"An U-box is a conserved T-rich region upstream of a retroviral polypurine tract that is involved in PPT primer creation during reverse transcription." [PMID:10556309, PMID:11577982, PMID:9649446]	1905169	SOFA	SOFA	sequence	3	SO	region	U_box
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0001788	"An U-box is a conserved T-rich region upstream of a retroviral polypurine tract that is involved in PPT primer creation during reverse transcription." [PMID:10556309, PMID:11577982, PMID:9649446]	2929589	SOFA	SOFA	sequence	4	SO	integrated_mobile_genetic_element	U_box
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001788	"An U-box is a conserved T-rich region upstream of a retroviral polypurine tract that is involved in PPT primer creation during reverse transcription." [PMID:10556309, PMID:11577982, PMID:9649446]	6311230	SOFA	SOFA	sequence	8	SO	sequence_feature	U_box
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0001788	"An U-box is a conserved T-rich region upstream of a retroviral polypurine tract that is involved in PPT primer creation during reverse transcription." [PMID:10556309, PMID:11577982, PMID:9649446]	4002671	SOFA	SOFA	sequence	5	SO	mobile_genetic_element	U_box
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001788	"An U-box is a conserved T-rich region upstream of a retroviral polypurine tract that is involved in PPT primer creation during reverse transcription." [PMID:10556309, PMID:11577982, PMID:9649446]	4966920	SOFA	SOFA	sequence	6	SO	biological_region	U_box
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001788	"An U-box is a conserved T-rich region upstream of a retroviral polypurine tract that is involved in PPT primer creation during reverse transcription." [PMID:10556309, PMID:11577982, PMID:9649446]	5741505	SOFA	SOFA	sequence	7	SO	region	U_box
SO:0001789	\N	\N	"A specialized region in the genomes of some yeast and fungi, the genes of which regulate mating type." [SO:ke]	SO:0001789	"A specialized region in the genomes of some yeast and fungi, the genes of which regulate mating type." [SO:ke]	46653	\N	\N	sequence	0	SO	mating_type_region	mating_type_region
SO:0005855	SO:0001789	\N	"A collection of related genes." [SO:ma]	SO:0001789	"A specialized region in the genomes of some yeast and fungi, the genes of which regulate mating type." [SO:ke]	491431	\N	SOFA	sequence	1	SO	gene_group	mating_type_region
SO:0001411	SO:0005855	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001789	"A specialized region in the genomes of some yeast and fungi, the genes of which regulate mating type." [SO:ke]	1074047	SOFA	SOFA	sequence	2	SO	biological_region	mating_type_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001789	"A specialized region in the genomes of some yeast and fungi, the genes of which regulate mating type." [SO:ke]	1905170	SOFA	SOFA	sequence	3	SO	region	mating_type_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001789	"A specialized region in the genomes of some yeast and fungi, the genes of which regulate mating type." [SO:ke]	2929591	SOFA	SOFA	sequence	4	SO	sequence_feature	mating_type_region
SO:0001790	\N	SOFA	"An assembly region that has been sequenced from both ends resulting in a read_pair (mate_pair)." [SO:ke]	SO:0001790	"An assembly region that has been sequenced from both ends resulting in a read_pair (mate_pair)." [SO:ke]	46654	\N	SOFA	sequence	0	SO	paired_end_fragment	paired_end_fragment
SO:0000143	SO:0001790	SOFA	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0001790	"An assembly region that has been sequenced from both ends resulting in a read_pair (mate_pair)." [SO:ke]	491432	SOFA	SOFA	sequence	1	SO	assembly_component	paired_end_fragment
SO:0001410	SO:0000143	SOFA	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001790	"An assembly region that has been sequenced from both ends resulting in a read_pair (mate_pair)." [SO:ke]	1074048	SOFA	SOFA	sequence	2	SO	experimental_feature	paired_end_fragment
SO:0000001	SO:0001410	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001790	"An assembly region that has been sequenced from both ends resulting in a read_pair (mate_pair)." [SO:ke]	1905171	SOFA	SOFA	sequence	3	SO	region	paired_end_fragment
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001790	"An assembly region that has been sequenced from both ends resulting in a read_pair (mate_pair)." [SO:ke]	2929592	SOFA	SOFA	sequence	4	SO	sequence_feature	paired_end_fragment
SO:0001791	\N	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001791	"A sequence variant that changes exon sequence." [SO:ke]	46655	\N	\N	sequence	0	SO	exon_variant	exon_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001791	"A sequence variant that changes exon sequence." [SO:ke]	491433	\N	\N	sequence	1	SO	transcript_variant	exon_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001791	"A sequence variant that changes exon sequence." [SO:ke]	1074049	\N	\N	sequence	2	SO	gene_variant	exon_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001791	"A sequence variant that changes exon sequence." [SO:ke]	1905172	\N	\N	sequence	3	SO	feature_variant	exon_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001791	"A sequence variant that changes exon sequence." [SO:ke]	2929593	\N	\N	sequence	4	SO	structural_variant	exon_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001791	"A sequence variant that changes exon sequence." [SO:ke]	4002672	\N	\N	sequence	5	SO	sequence_variant	exon_variant
SO:0001792	\N	\N	"A sequence variant that changes non-coding exon sequence in a non-coding transcript." [EBI:fc, SO:ke]	SO:0001792	"A sequence variant that changes non-coding exon sequence in a non-coding transcript." [EBI:fc, SO:ke]	46656	\N	\N	sequence	0	SO	non_coding_transcript_exon_variant	non_coding_transcript_exon_variant
SO:0001619	SO:0001792	\N	"A transcript variant of a non coding RNA gene." [SO:ke]	SO:0001792	"A sequence variant that changes non-coding exon sequence in a non-coding transcript." [EBI:fc, SO:ke]	491434	\N	\N	sequence	1	SO	non_coding_transcript_variant	non_coding_transcript_exon_variant
SO:0001791	SO:0001792	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001792	"A sequence variant that changes non-coding exon sequence in a non-coding transcript." [EBI:fc, SO:ke]	491435	\N	\N	sequence	1	SO	exon_variant	non_coding_transcript_exon_variant
SO:0001576	SO:0001619	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001792	"A sequence variant that changes non-coding exon sequence in a non-coding transcript." [EBI:fc, SO:ke]	1074050	\N	\N	sequence	2	SO	transcript_variant	non_coding_transcript_exon_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001792	"A sequence variant that changes non-coding exon sequence in a non-coding transcript." [EBI:fc, SO:ke]	1074051	\N	\N	sequence	2	SO	transcript_variant	non_coding_transcript_exon_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001792	"A sequence variant that changes non-coding exon sequence in a non-coding transcript." [EBI:fc, SO:ke]	1905173	\N	\N	sequence	3	SO	gene_variant	non_coding_transcript_exon_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001792	"A sequence variant that changes non-coding exon sequence in a non-coding transcript." [EBI:fc, SO:ke]	2929594	\N	\N	sequence	4	SO	feature_variant	non_coding_transcript_exon_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001792	"A sequence variant that changes non-coding exon sequence in a non-coding transcript." [EBI:fc, SO:ke]	4002673	\N	\N	sequence	5	SO	structural_variant	non_coding_transcript_exon_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001792	"A sequence variant that changes non-coding exon sequence in a non-coding transcript." [EBI:fc, SO:ke]	4966921	\N	\N	sequence	6	SO	sequence_variant	non_coding_transcript_exon_variant
SO:0001793	\N	\N	"A read from an end of the clone sequence." [SO:ke]	SO:0001793	"A read from an end of the clone sequence." [SO:ke]	46657	\N	\N	sequence	0	SO	clone_end	clone_end
SO:0000150	SO:0001793	\N	"A sequence obtained from a single sequencing experiment. Typically a read is produced when a base calling program interprets information from a chromatogram trace file produced from a sequencing machine." [SO:rd]	SO:0001793	"A read from an end of the clone sequence." [SO:ke]	491436	\N	SOFA	sequence	1	SO	read	clone_end
SO:0000151	SO:0001793	\N	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0001793	"A read from an end of the clone sequence." [SO:ke]	491437	\N	SOFA	sequence	1	SO	clone	clone_end
SO:0000143	SO:0000150	\N	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0001793	"A read from an end of the clone sequence." [SO:ke]	1074052	SOFA	SOFA	sequence	2	SO	assembly_component	clone_end
SO:0000149	SO:0000150	\N	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	SO:0001793	"A read from an end of the clone sequence." [SO:ke]	1074053	SOFA	SOFA	sequence	2	SO	contig	clone_end
SO:0000695	SO:0000151	\N	"A sequence used in experiment." [SO:ke]	SO:0001793	"A read from an end of the clone sequence." [SO:ke]	1074054	SOFA	SOFA	sequence	2	SO	reagent	clone_end
SO:0001410	SO:0000143	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001793	"A read from an end of the clone sequence." [SO:ke]	2929596	SOFA	SOFA	sequence	4	SO	experimental_feature	clone_end
SO:0000143	SO:0000149	\N	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0001793	"A read from an end of the clone sequence." [SO:ke]	1905175	SOFA	SOFA	sequence	3	SO	assembly_component	clone_end
SO:0000148	SO:0000149	\N	"One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's." [SO:ls]	SO:0001793	"A read from an end of the clone sequence." [SO:ke]	1905176	SOFA	SOFA	sequence	3	SO	supercontig	clone_end
SO:0000353	SO:0000149	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001793	"A read from an end of the clone sequence." [SO:ke]	1905177	SOFA	SOFA	sequence	3	SO	sequence_assembly	clone_end
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001793	"A read from an end of the clone sequence." [SO:ke]	1905178	SOFA	SOFA	sequence	3	SO	biomaterial_region	clone_end
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001793	"A read from an end of the clone sequence." [SO:ke]	6469770	SOFA	SOFA	sequence	9	SO	region	clone_end
SO:0000719	SO:0000148	\N	"An ordered and oriented set of scaffolds based on somewhat weaker sets of inferential evidence such as one set of mate pair reads together with supporting evidence from ESTs or location of markers from SNP or microsatellite maps, or cytogenetic localization of contained markers." [FB:WG]	SO:0001793	"A read from an end of the clone sequence." [SO:ke]	2929597	SOFA	SOFA	sequence	4	SO	ultracontig	clone_end
SO:0001876	SO:0000148	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001793	"A read from an end of the clone sequence." [SO:ke]	2929598	SOFA	\N	sequence	4	SO	partial_genomic_sequence_assembly	clone_end
SO:0001248	SO:0000353	\N	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0001793	"A read from an end of the clone sequence." [SO:ke]	5407482	SOFA	SOFA	sequence	7	SO	assembly	clone_end
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001793	"A read from an end of the clone sequence." [SO:ke]	2929600	SOFA	SOFA	sequence	4	SO	region	clone_end
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001793	"A read from an end of the clone sequence." [SO:ke]	6778566	SOFA	SOFA	sequence	10	SO	sequence_feature	clone_end
SO:0001876	SO:0000719	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001793	"A read from an end of the clone sequence." [SO:ke]	4002675	SOFA	\N	sequence	5	SO	partial_genomic_sequence_assembly	clone_end
SO:0000353	SO:0001876	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001793	"A read from an end of the clone sequence." [SO:ke]	4966922	\N	SOFA	sequence	6	SO	sequence_assembly	clone_end
SO:0001410	SO:0001248	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001793	"A read from an end of the clone sequence." [SO:ke]	5876457	SOFA	SOFA	sequence	8	SO	experimental_feature	clone_end
SO:0001794	\N	\N	"A point centromere is a relatively small centromere (about 125 bp DNA) in discrete sequence, found in some yeast including S. cerevisiae." [PMID:7502067, SO:vw]	SO:0001794	"A point centromere is a relatively small centromere (about 125 bp DNA) in discrete sequence, found in some yeast including S. cerevisiae." [PMID:7502067, SO:vw]	46658	\N	\N	sequence	0	SO	point_centromere	point_centromere
SO:0000577	SO:0001794	\N	"A region of chromosome where the spindle fibers attach during mitosis and meiosis." [SO:ke]	SO:0001794	"A point centromere is a relatively small centromere (about 125 bp DNA) in discrete sequence, found in some yeast including S. cerevisiae." [PMID:7502067, SO:vw]	491438	\N	SOFA	sequence	1	SO	centromere	point_centromere
SO:0000628	SO:0000577	\N	"" []	SO:0001794	"A point centromere is a relatively small centromere (about 125 bp DNA) in discrete sequence, found in some yeast including S. cerevisiae." [PMID:7502067, SO:vw]	1074055	SOFA	SOFA	sequence	2	SO	chromosomal_structural_element	point_centromere
SO:0000830	SO:0000628	\N	"A region of a chromosome." [SO:ke]	SO:0001794	"A point centromere is a relatively small centromere (about 125 bp DNA) in discrete sequence, found in some yeast including S. cerevisiae." [PMID:7502067, SO:vw]	1905179	SOFA	SOFA	sequence	3	SO	chromosome_part	point_centromere
SO:0000340	SO:0000830	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0001794	"A point centromere is a relatively small centromere (about 125 bp DNA) in discrete sequence, found in some yeast including S. cerevisiae." [PMID:7502067, SO:vw]	2929601	SOFA	SOFA	sequence	4	SO	chromosome	point_centromere
SO:0001411	SO:0000830	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001794	"A point centromere is a relatively small centromere (about 125 bp DNA) in discrete sequence, found in some yeast including S. cerevisiae." [PMID:7502067, SO:vw]	2929602	SOFA	SOFA	sequence	4	SO	biological_region	point_centromere
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001794	"A point centromere is a relatively small centromere (about 125 bp DNA) in discrete sequence, found in some yeast including S. cerevisiae." [PMID:7502067, SO:vw]	4002678	SOFA	SOFA	sequence	5	SO	replicon	point_centromere
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001794	"A point centromere is a relatively small centromere (about 125 bp DNA) in discrete sequence, found in some yeast including S. cerevisiae." [PMID:7502067, SO:vw]	5741506	SOFA	SOFA	sequence	7	SO	region	point_centromere
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001794	"A point centromere is a relatively small centromere (about 125 bp DNA) in discrete sequence, found in some yeast including S. cerevisiae." [PMID:7502067, SO:vw]	4966925	SOFA	SOFA	sequence	6	SO	biological_region	point_centromere
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001794	"A point centromere is a relatively small centromere (about 125 bp DNA) in discrete sequence, found in some yeast including S. cerevisiae." [PMID:7502067, SO:vw]	5996457	SOFA	SOFA	sequence	8	SO	sequence_feature	point_centromere
SO:0001795	\N	\N	"A regional centromere is a large modular centromere found in fission yeast and higher eukaryotes. It consist of a central core region flanked by inverted inner and outer repeat regions." [PMID:7502067, SO:vw]	SO:0001795	"A regional centromere is a large modular centromere found in fission yeast and higher eukaryotes. It consist of a central core region flanked by inverted inner and outer repeat regions." [PMID:7502067, SO:vw]	46659	\N	\N	sequence	0	SO	regional_centromere	regional_centromere
SO:0000577	SO:0001795	\N	"A region of chromosome where the spindle fibers attach during mitosis and meiosis." [SO:ke]	SO:0001795	"A regional centromere is a large modular centromere found in fission yeast and higher eukaryotes. It consist of a central core region flanked by inverted inner and outer repeat regions." [PMID:7502067, SO:vw]	491439	\N	SOFA	sequence	1	SO	centromere	regional_centromere
SO:0000628	SO:0000577	\N	"" []	SO:0001795	"A regional centromere is a large modular centromere found in fission yeast and higher eukaryotes. It consist of a central core region flanked by inverted inner and outer repeat regions." [PMID:7502067, SO:vw]	1074056	SOFA	SOFA	sequence	2	SO	chromosomal_structural_element	regional_centromere
SO:0000830	SO:0000628	\N	"A region of a chromosome." [SO:ke]	SO:0001795	"A regional centromere is a large modular centromere found in fission yeast and higher eukaryotes. It consist of a central core region flanked by inverted inner and outer repeat regions." [PMID:7502067, SO:vw]	1905180	SOFA	SOFA	sequence	3	SO	chromosome_part	regional_centromere
SO:0000340	SO:0000830	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0001795	"A regional centromere is a large modular centromere found in fission yeast and higher eukaryotes. It consist of a central core region flanked by inverted inner and outer repeat regions." [PMID:7502067, SO:vw]	2929603	SOFA	SOFA	sequence	4	SO	chromosome	regional_centromere
SO:0001411	SO:0000830	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001795	"A regional centromere is a large modular centromere found in fission yeast and higher eukaryotes. It consist of a central core region flanked by inverted inner and outer repeat regions." [PMID:7502067, SO:vw]	2929604	SOFA	SOFA	sequence	4	SO	biological_region	regional_centromere
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001795	"A regional centromere is a large modular centromere found in fission yeast and higher eukaryotes. It consist of a central core region flanked by inverted inner and outer repeat regions." [PMID:7502067, SO:vw]	4002680	SOFA	SOFA	sequence	5	SO	replicon	regional_centromere
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001795	"A regional centromere is a large modular centromere found in fission yeast and higher eukaryotes. It consist of a central core region flanked by inverted inner and outer repeat regions." [PMID:7502067, SO:vw]	5741507	SOFA	SOFA	sequence	7	SO	region	regional_centromere
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001795	"A regional centromere is a large modular centromere found in fission yeast and higher eukaryotes. It consist of a central core region flanked by inverted inner and outer repeat regions." [PMID:7502067, SO:vw]	4966927	SOFA	SOFA	sequence	6	SO	biological_region	regional_centromere
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001795	"A regional centromere is a large modular centromere found in fission yeast and higher eukaryotes. It consist of a central core region flanked by inverted inner and outer repeat regions." [PMID:7502067, SO:vw]	5996458	SOFA	SOFA	sequence	8	SO	sequence_feature	regional_centromere
SO:0001796	\N	\N	"A conserved region within the central region of a modular centromere, where the kinetochore is formed." [SO:vw]	SO:0001796	"A conserved region within the central region of a modular centromere, where the kinetochore is formed." [SO:vw]	46660	\N	\N	sequence	0	SO	regional_centromere_central_core	regional_centromere_central_core
SO:0000330	SO:0001796	\N	"Region of sequence similarity by descent from a common ancestor." [SO:ke]	SO:0001796	"A conserved region within the central region of a modular centromere, where the kinetochore is formed." [SO:vw]	491440	\N	SOFA	sequence	1	SO	conserved_region	regional_centromere_central_core
SO:0001795	SO:0001796	\N	"A regional centromere is a large modular centromere found in fission yeast and higher eukaryotes. It consist of a central core region flanked by inverted inner and outer repeat regions." [PMID:7502067, SO:vw]	SO:0001796	"A conserved region within the central region of a modular centromere, where the kinetochore is formed." [SO:vw]	491441	\N	\N	sequence	1	SO	regional_centromere	regional_centromere_central_core
SO:0001410	SO:0000330	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001796	"A conserved region within the central region of a modular centromere, where the kinetochore is formed." [SO:vw]	1074057	SOFA	SOFA	sequence	2	SO	experimental_feature	regional_centromere_central_core
SO:0000577	SO:0001795	\N	"A region of chromosome where the spindle fibers attach during mitosis and meiosis." [SO:ke]	SO:0001796	"A conserved region within the central region of a modular centromere, where the kinetochore is formed." [SO:vw]	1074058	\N	SOFA	sequence	2	SO	centromere	regional_centromere_central_core
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001796	"A conserved region within the central region of a modular centromere, where the kinetochore is formed." [SO:vw]	1905181	SOFA	SOFA	sequence	3	SO	region	regional_centromere_central_core
SO:0000628	SO:0000577	\N	"" []	SO:0001796	"A conserved region within the central region of a modular centromere, where the kinetochore is formed." [SO:vw]	1905182	SOFA	SOFA	sequence	3	SO	chromosomal_structural_element	regional_centromere_central_core
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001796	"A conserved region within the central region of a modular centromere, where the kinetochore is formed." [SO:vw]	6550291	SOFA	SOFA	sequence	9	SO	sequence_feature	regional_centromere_central_core
SO:0000830	SO:0000628	\N	"A region of a chromosome." [SO:ke]	SO:0001796	"A conserved region within the central region of a modular centromere, where the kinetochore is formed." [SO:vw]	2929606	SOFA	SOFA	sequence	4	SO	chromosome_part	regional_centromere_central_core
SO:0000340	SO:0000830	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0001796	"A conserved region within the central region of a modular centromere, where the kinetochore is formed." [SO:vw]	4002682	SOFA	SOFA	sequence	5	SO	chromosome	regional_centromere_central_core
SO:0001411	SO:0000830	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001796	"A conserved region within the central region of a modular centromere, where the kinetochore is formed." [SO:vw]	4002683	SOFA	SOFA	sequence	5	SO	biological_region	regional_centromere_central_core
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001796	"A conserved region within the central region of a modular centromere, where the kinetochore is formed." [SO:vw]	4966929	SOFA	SOFA	sequence	6	SO	replicon	regional_centromere_central_core
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001796	"A conserved region within the central region of a modular centromere, where the kinetochore is formed." [SO:vw]	6311231	SOFA	SOFA	sequence	8	SO	region	regional_centromere_central_core
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001796	"A conserved region within the central region of a modular centromere, where the kinetochore is formed." [SO:vw]	5741508	SOFA	SOFA	sequence	7	SO	biological_region	regional_centromere_central_core
SO:0001797	\N	\N	"A repeat region found within the modular centromere." [SO:ke]	SO:0001797	"A repeat region found within the modular centromere." [SO:ke]	46661	\N	\N	sequence	0	SO	centromeric_repeat	centromeric_repeat
SO:0000657	SO:0001797	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0001797	"A repeat region found within the modular centromere." [SO:ke]	491442	\N	SOFA	sequence	1	SO	repeat_region	centromeric_repeat
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001797	"A repeat region found within the modular centromere." [SO:ke]	1074059	SOFA	SOFA	sequence	2	SO	biological_region	centromeric_repeat
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001797	"A repeat region found within the modular centromere." [SO:ke]	1905183	SOFA	SOFA	sequence	3	SO	region	centromeric_repeat
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001797	"A repeat region found within the modular centromere." [SO:ke]	2929607	SOFA	SOFA	sequence	4	SO	sequence_feature	centromeric_repeat
SO:0001798	\N	\N	"The inner inverted repeat region of a modular centromere and part of the central core surrounding a non-conserved central region. This region is adjacent to the central core, on each chromosome arm." [SO:vw]	SO:0001798	"The inner inverted repeat region of a modular centromere and part of the central core surrounding a non-conserved central region. This region is adjacent to the central core, on each chromosome arm." [SO:vw]	46662	\N	\N	sequence	0	SO	regional_centromere_inner_repeat_region	regional_centromere_inner_repeat_region
SO:0001795	SO:0001798	\N	"A regional centromere is a large modular centromere found in fission yeast and higher eukaryotes. It consist of a central core region flanked by inverted inner and outer repeat regions." [PMID:7502067, SO:vw]	SO:0001798	"The inner inverted repeat region of a modular centromere and part of the central core surrounding a non-conserved central region. This region is adjacent to the central core, on each chromosome arm." [SO:vw]	491443	\N	\N	sequence	1	SO	regional_centromere	regional_centromere_inner_repeat_region
SO:0001796	SO:0001798	\N	"A conserved region within the central region of a modular centromere, where the kinetochore is formed." [SO:vw]	SO:0001798	"The inner inverted repeat region of a modular centromere and part of the central core surrounding a non-conserved central region. This region is adjacent to the central core, on each chromosome arm." [SO:vw]	491444	\N	\N	sequence	1	SO	regional_centromere_central_core	regional_centromere_inner_repeat_region
SO:0001797	SO:0001798	\N	"A repeat region found within the modular centromere." [SO:ke]	SO:0001798	"The inner inverted repeat region of a modular centromere and part of the central core surrounding a non-conserved central region. This region is adjacent to the central core, on each chromosome arm." [SO:vw]	491445	\N	\N	sequence	1	SO	centromeric_repeat	regional_centromere_inner_repeat_region
SO:0000577	SO:0001795	\N	"A region of chromosome where the spindle fibers attach during mitosis and meiosis." [SO:ke]	SO:0001798	"The inner inverted repeat region of a modular centromere and part of the central core surrounding a non-conserved central region. This region is adjacent to the central core, on each chromosome arm." [SO:vw]	1905186	\N	SOFA	sequence	3	SO	centromere	regional_centromere_inner_repeat_region
SO:0000330	SO:0001796	\N	"Region of sequence similarity by descent from a common ancestor." [SO:ke]	SO:0001798	"The inner inverted repeat region of a modular centromere and part of the central core surrounding a non-conserved central region. This region is adjacent to the central core, on each chromosome arm." [SO:vw]	1074061	\N	SOFA	sequence	2	SO	conserved_region	regional_centromere_inner_repeat_region
SO:0001795	SO:0001796	\N	"A regional centromere is a large modular centromere found in fission yeast and higher eukaryotes. It consist of a central core region flanked by inverted inner and outer repeat regions." [PMID:7502067, SO:vw]	SO:0001798	"The inner inverted repeat region of a modular centromere and part of the central core surrounding a non-conserved central region. This region is adjacent to the central core, on each chromosome arm." [SO:vw]	1074062	\N	\N	sequence	2	SO	regional_centromere	regional_centromere_inner_repeat_region
SO:0000657	SO:0001797	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0001798	"The inner inverted repeat region of a modular centromere and part of the central core surrounding a non-conserved central region. This region is adjacent to the central core, on each chromosome arm." [SO:vw]	1074063	\N	SOFA	sequence	2	SO	repeat_region	regional_centromere_inner_repeat_region
SO:0000628	SO:0000577	\N	"" []	SO:0001798	"The inner inverted repeat region of a modular centromere and part of the central core surrounding a non-conserved central region. This region is adjacent to the central core, on each chromosome arm." [SO:vw]	2018246	SOFA	SOFA	sequence	4	SO	chromosomal_structural_element	regional_centromere_inner_repeat_region
SO:0001410	SO:0000330	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001798	"The inner inverted repeat region of a modular centromere and part of the central core surrounding a non-conserved central region. This region is adjacent to the central core, on each chromosome arm." [SO:vw]	1905185	SOFA	SOFA	sequence	3	SO	experimental_feature	regional_centromere_inner_repeat_region
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001798	"The inner inverted repeat region of a modular centromere and part of the central core surrounding a non-conserved central region. This region is adjacent to the central core, on each chromosome arm." [SO:vw]	1905187	SOFA	SOFA	sequence	3	SO	biological_region	regional_centromere_inner_repeat_region
SO:0000830	SO:0000628	\N	"A region of a chromosome." [SO:ke]	SO:0001798	"The inner inverted repeat region of a modular centromere and part of the central core surrounding a non-conserved central region. This region is adjacent to the central core, on each chromosome arm." [SO:vw]	3174004	SOFA	SOFA	sequence	5	SO	chromosome_part	regional_centromere_inner_repeat_region
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001798	"The inner inverted repeat region of a modular centromere and part of the central core surrounding a non-conserved central region. This region is adjacent to the central core, on each chromosome arm." [SO:vw]	2929609	SOFA	SOFA	sequence	4	SO	region	regional_centromere_inner_repeat_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001798	"The inner inverted repeat region of a modular centromere and part of the central core surrounding a non-conserved central region. This region is adjacent to the central core, on each chromosome arm." [SO:vw]	6631418	SOFA	SOFA	sequence	9	SO	region	regional_centromere_inner_repeat_region
SO:0000340	SO:0000830	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0001798	"The inner inverted repeat region of a modular centromere and part of the central core surrounding a non-conserved central region. This region is adjacent to the central core, on each chromosome arm." [SO:vw]	4385856	SOFA	SOFA	sequence	6	SO	chromosome	regional_centromere_inner_repeat_region
SO:0001411	SO:0000830	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001798	"The inner inverted repeat region of a modular centromere and part of the central core surrounding a non-conserved central region. This region is adjacent to the central core, on each chromosome arm." [SO:vw]	4385857	SOFA	SOFA	sequence	6	SO	biological_region	regional_centromere_inner_repeat_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001798	"The inner inverted repeat region of a modular centromere and part of the central core surrounding a non-conserved central region. This region is adjacent to the central core, on each chromosome arm." [SO:vw]	6778567	SOFA	SOFA	sequence	10	SO	sequence_feature	regional_centromere_inner_repeat_region
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001798	"The inner inverted repeat region of a modular centromere and part of the central core surrounding a non-conserved central region. This region is adjacent to the central core, on each chromosome arm." [SO:vw]	5407483	SOFA	SOFA	sequence	7	SO	replicon	regional_centromere_inner_repeat_region
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001798	"The inner inverted repeat region of a modular centromere and part of the central core surrounding a non-conserved central region. This region is adjacent to the central core, on each chromosome arm." [SO:vw]	6146678	SOFA	SOFA	sequence	8	SO	biological_region	regional_centromere_inner_repeat_region
SO:0001799	\N	\N	"The heterochromatic outer repeat region of a modular centromere. These repeats exist in tandem arrays on both chromosome arms." [SO:vw]	SO:0001799	"The heterochromatic outer repeat region of a modular centromere. These repeats exist in tandem arrays on both chromosome arms." [SO:vw]	46663	\N	\N	sequence	0	SO	regional_centromere_outer_repeat_region	regional_centromere_outer_repeat_region
SO:0001795	SO:0001799	\N	"A regional centromere is a large modular centromere found in fission yeast and higher eukaryotes. It consist of a central core region flanked by inverted inner and outer repeat regions." [PMID:7502067, SO:vw]	SO:0001799	"The heterochromatic outer repeat region of a modular centromere. These repeats exist in tandem arrays on both chromosome arms." [SO:vw]	491446	\N	\N	sequence	1	SO	regional_centromere	regional_centromere_outer_repeat_region
SO:0001797	SO:0001799	\N	"A repeat region found within the modular centromere." [SO:ke]	SO:0001799	"The heterochromatic outer repeat region of a modular centromere. These repeats exist in tandem arrays on both chromosome arms." [SO:vw]	491447	\N	\N	sequence	1	SO	centromeric_repeat	regional_centromere_outer_repeat_region
SO:0000577	SO:0001795	\N	"A region of chromosome where the spindle fibers attach during mitosis and meiosis." [SO:ke]	SO:0001799	"The heterochromatic outer repeat region of a modular centromere. These repeats exist in tandem arrays on both chromosome arms." [SO:vw]	1074064	\N	SOFA	sequence	2	SO	centromere	regional_centromere_outer_repeat_region
SO:0000657	SO:0001797	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0001799	"The heterochromatic outer repeat region of a modular centromere. These repeats exist in tandem arrays on both chromosome arms." [SO:vw]	1074065	\N	SOFA	sequence	2	SO	repeat_region	regional_centromere_outer_repeat_region
SO:0000628	SO:0000577	\N	"" []	SO:0001799	"The heterochromatic outer repeat region of a modular centromere. These repeats exist in tandem arrays on both chromosome arms." [SO:vw]	1905188	SOFA	SOFA	sequence	3	SO	chromosomal_structural_element	regional_centromere_outer_repeat_region
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001799	"The heterochromatic outer repeat region of a modular centromere. These repeats exist in tandem arrays on both chromosome arms." [SO:vw]	1905189	SOFA	SOFA	sequence	3	SO	biological_region	regional_centromere_outer_repeat_region
SO:0000830	SO:0000628	\N	"A region of a chromosome." [SO:ke]	SO:0001799	"The heterochromatic outer repeat region of a modular centromere. These repeats exist in tandem arrays on both chromosome arms." [SO:vw]	2929611	SOFA	SOFA	sequence	4	SO	chromosome_part	regional_centromere_outer_repeat_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001799	"The heterochromatic outer repeat region of a modular centromere. These repeats exist in tandem arrays on both chromosome arms." [SO:vw]	6311233	SOFA	SOFA	sequence	8	SO	region	regional_centromere_outer_repeat_region
SO:0000340	SO:0000830	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0001799	"The heterochromatic outer repeat region of a modular centromere. These repeats exist in tandem arrays on both chromosome arms." [SO:vw]	4002687	SOFA	SOFA	sequence	5	SO	chromosome	regional_centromere_outer_repeat_region
SO:0001411	SO:0000830	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001799	"The heterochromatic outer repeat region of a modular centromere. These repeats exist in tandem arrays on both chromosome arms." [SO:vw]	4002688	SOFA	SOFA	sequence	5	SO	biological_region	regional_centromere_outer_repeat_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001799	"The heterochromatic outer repeat region of a modular centromere. These repeats exist in tandem arrays on both chromosome arms." [SO:vw]	6409717	SOFA	SOFA	sequence	9	SO	sequence_feature	regional_centromere_outer_repeat_region
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001799	"The heterochromatic outer repeat region of a modular centromere. These repeats exist in tandem arrays on both chromosome arms." [SO:vw]	4966933	SOFA	SOFA	sequence	6	SO	replicon	regional_centromere_outer_repeat_region
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001799	"The heterochromatic outer repeat region of a modular centromere. These repeats exist in tandem arrays on both chromosome arms." [SO:vw]	5741511	SOFA	SOFA	sequence	7	SO	biological_region	regional_centromere_outer_repeat_region
SO:0001800	\N	\N	"The sequence of a 21 nucleotide double stranded, polyadenylated non coding RNA, transcribed from the TAS gene." [PMID:16145017]	SO:0001800	"The sequence of a 21 nucleotide double stranded, polyadenylated non coding RNA, transcribed from the TAS gene." [PMID:16145017]	46664	\N	\N	sequence	0	SO	tasiRNA	tasiRNA
SO:0000655	SO:0001800	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0001800	"The sequence of a 21 nucleotide double stranded, polyadenylated non coding RNA, transcribed from the TAS gene." [PMID:16145017]	491448	\N	SOFA	sequence	1	SO	ncRNA	tasiRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001800	"The sequence of a 21 nucleotide double stranded, polyadenylated non coding RNA, transcribed from the TAS gene." [PMID:16145017]	1074066	SOFA	SOFA	sequence	2	SO	mature_transcript	tasiRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001800	"The sequence of a 21 nucleotide double stranded, polyadenylated non coding RNA, transcribed from the TAS gene." [PMID:16145017]	1905190	SOFA	SOFA	sequence	3	SO	transcript	tasiRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001800	"The sequence of a 21 nucleotide double stranded, polyadenylated non coding RNA, transcribed from the TAS gene." [PMID:16145017]	2929613	SOFA	SOFA	sequence	4	SO	gene_member_region	tasiRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001800	"The sequence of a 21 nucleotide double stranded, polyadenylated non coding RNA, transcribed from the TAS gene." [PMID:16145017]	4002690	SOFA	SOFA	sequence	5	SO	biological_region	tasiRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001800	"The sequence of a 21 nucleotide double stranded, polyadenylated non coding RNA, transcribed from the TAS gene." [PMID:16145017]	4966935	SOFA	SOFA	sequence	6	SO	region	tasiRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001800	"The sequence of a 21 nucleotide double stranded, polyadenylated non coding RNA, transcribed from the TAS gene." [PMID:16145017]	5741512	SOFA	SOFA	sequence	7	SO	sequence_feature	tasiRNA
SO:0001801	\N	\N	"A primary transcript encoding a tasiRNA." [PMID:16145017]	SO:0001801	"A primary transcript encoding a tasiRNA." [PMID:16145017]	46665	\N	\N	sequence	0	SO	tasiRNA_primary_transcript	tasiRNA_primary_transcript
SO:0000483	SO:0001801	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0001801	"A primary transcript encoding a tasiRNA." [PMID:16145017]	491449	\N	SOFA	sequence	1	SO	nc_primary_transcript	tasiRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001801	"A primary transcript encoding a tasiRNA." [PMID:16145017]	1074067	SOFA	SOFA	sequence	2	SO	primary_transcript	tasiRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001801	"A primary transcript encoding a tasiRNA." [PMID:16145017]	1905191	SOFA	SOFA	sequence	3	SO	transcript	tasiRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001801	"A primary transcript encoding a tasiRNA." [PMID:16145017]	2929614	SOFA	SOFA	sequence	4	SO	gene_member_region	tasiRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001801	"A primary transcript encoding a tasiRNA." [PMID:16145017]	4002691	SOFA	SOFA	sequence	5	SO	biological_region	tasiRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001801	"A primary transcript encoding a tasiRNA." [PMID:16145017]	4966936	SOFA	SOFA	sequence	6	SO	region	tasiRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001801	"A primary transcript encoding a tasiRNA." [PMID:16145017]	5741513	SOFA	SOFA	sequence	7	SO	sequence_feature	tasiRNA_primary_transcript
SO:0001802	\N	\N	"A transcript processing variant whereby polyadenylation of the encoded transcript is increased with respect to the reference." [SO:ke]	SO:0001802	"A transcript processing variant whereby polyadenylation of the encoded transcript is increased with respect to the reference." [SO:ke]	46666	\N	\N	sequence	0	SO	increased_polyadenylation_variant	increased_polyadenylation_variant
SO:0001545	SO:0001802	\N	"A sequence variant that changes polyadenylation with respect to a reference sequence." [SO:ke]	SO:0001802	"A transcript processing variant whereby polyadenylation of the encoded transcript is increased with respect to the reference." [SO:ke]	491450	\N	\N	sequence	1	SO	polyadenylation_variant	increased_polyadenylation_variant
SO:0001543	SO:0001545	\N	"A sequence variant that affects the post transcriptional processing of a transcript with respect to a reference sequence." [SO:ke]	SO:0001802	"A transcript processing variant whereby polyadenylation of the encoded transcript is increased with respect to the reference." [SO:ke]	1074068	\N	\N	sequence	2	SO	transcript_processing_variant	increased_polyadenylation_variant
SO:0001538	SO:0001543	\N	"A sequence variant which alters the functioning of a transcript with respect to a reference sequence." [SO:ke]	SO:0001802	"A transcript processing variant whereby polyadenylation of the encoded transcript is increased with respect to the reference." [SO:ke]	1905192	\N	\N	sequence	3	SO	transcript_function_variant	increased_polyadenylation_variant
SO:0001536	SO:0001538	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001802	"A transcript processing variant whereby polyadenylation of the encoded transcript is increased with respect to the reference." [SO:ke]	2929615	\N	\N	sequence	4	SO	functional_variant	increased_polyadenylation_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001802	"A transcript processing variant whereby polyadenylation of the encoded transcript is increased with respect to the reference." [SO:ke]	4002692	\N	\N	sequence	5	SO	sequence_variant	increased_polyadenylation_variant
SO:0001803	\N	\N	"A transcript processing variant whereby polyadenylation of the encoded transcript is decreased with respect to the reference." [SO:ke]	SO:0001803	"A transcript processing variant whereby polyadenylation of the encoded transcript is decreased with respect to the reference." [SO:ke]	46667	\N	\N	sequence	0	SO	decreased_polyadenylation_variant	decreased_polyadenylation_variant
SO:0001545	SO:0001803	\N	"A sequence variant that changes polyadenylation with respect to a reference sequence." [SO:ke]	SO:0001803	"A transcript processing variant whereby polyadenylation of the encoded transcript is decreased with respect to the reference." [SO:ke]	491451	\N	\N	sequence	1	SO	polyadenylation_variant	decreased_polyadenylation_variant
SO:0001543	SO:0001545	\N	"A sequence variant that affects the post transcriptional processing of a transcript with respect to a reference sequence." [SO:ke]	SO:0001803	"A transcript processing variant whereby polyadenylation of the encoded transcript is decreased with respect to the reference." [SO:ke]	1074069	\N	\N	sequence	2	SO	transcript_processing_variant	decreased_polyadenylation_variant
SO:0001538	SO:0001543	\N	"A sequence variant which alters the functioning of a transcript with respect to a reference sequence." [SO:ke]	SO:0001803	"A transcript processing variant whereby polyadenylation of the encoded transcript is decreased with respect to the reference." [SO:ke]	1905193	\N	\N	sequence	3	SO	transcript_function_variant	decreased_polyadenylation_variant
SO:0001536	SO:0001538	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0001803	"A transcript processing variant whereby polyadenylation of the encoded transcript is decreased with respect to the reference." [SO:ke]	2929616	\N	\N	sequence	4	SO	functional_variant	decreased_polyadenylation_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001803	"A transcript processing variant whereby polyadenylation of the encoded transcript is decreased with respect to the reference." [SO:ke]	4002693	\N	\N	sequence	5	SO	sequence_variant	decreased_polyadenylation_variant
SO:0001804	\N	\N	"A conserved polypeptide motif that mediates protein-protein interaction and defines adaptor proteins for DDB1/cullin 4 ubiquitin ligases." [PMID:18794354, PMID:19818632]	SO:0001804	"A conserved polypeptide motif that mediates protein-protein interaction and defines adaptor proteins for DDB1/cullin 4 ubiquitin ligases." [PMID:18794354, PMID:19818632]	46668	\N	\N	sequence	0	SO	DDB_box	DDB_box
SO:0001093	SO:0001804	\N	"A binding site that, in the protein molecule, interacts selectively and non-covalently with polypeptide residues." [EBIBS:GAR, UniProt:Curation_manual]	SO:0001804	"A conserved polypeptide motif that mediates protein-protein interaction and defines adaptor proteins for DDB1/cullin 4 ubiquitin ligases." [PMID:18794354, PMID:19818632]	491452	\N	biosapiens	sequence	1	SO	protein_protein_contact	DDB_box
SO:0000410	SO:0001093	\N	"A binding site that, in the molecule, interacts selectively and non-covalently with polypeptide molecules." [SO:ke]	SO:0001804	"A conserved polypeptide motif that mediates protein-protein interaction and defines adaptor proteins for DDB1/cullin 4 ubiquitin ligases." [PMID:18794354, PMID:19818632]	1074070	biosapiens	SOFA	sequence	2	SO	protein_binding_site	DDB_box
SO:0100002	SO:0001093	\N	"A region that is involved a contact with another molecule." [EBIBS:GAR]	SO:0001804	"A conserved polypeptide motif that mediates protein-protein interaction and defines adaptor proteins for DDB1/cullin 4 ubiquitin ligases." [PMID:18794354, PMID:19818632]	1074071	biosapiens	biosapiens	sequence	2	SO	molecular_contact_region	DDB_box
SO:0000409	SO:0000410	\N	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0001804	"A conserved polypeptide motif that mediates protein-protein interaction and defines adaptor proteins for DDB1/cullin 4 ubiquitin ligases." [PMID:18794354, PMID:19818632]	1905194	SOFA	biosapiens,SOFA	sequence	3	SO	binding_site	DDB_box
SO:0100001	SO:0100002	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001804	"A conserved polypeptide motif that mediates protein-protein interaction and defines adaptor proteins for DDB1/cullin 4 ubiquitin ligases." [PMID:18794354, PMID:19818632]	1905195	biosapiens	biosapiens	sequence	3	SO	biochemical_region_of_peptide	DDB_box
SO:0001411	SO:0000409	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001804	"A conserved polypeptide motif that mediates protein-protein interaction and defines adaptor proteins for DDB1/cullin 4 ubiquitin ligases." [PMID:18794354, PMID:19818632]	2929617	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	DDB_box
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001804	"A conserved polypeptide motif that mediates protein-protein interaction and defines adaptor proteins for DDB1/cullin 4 ubiquitin ligases." [PMID:18794354, PMID:19818632]	2929618	biosapiens	biosapiens	sequence	4	SO	polypeptide_motif	DDB_box
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001804	"A conserved polypeptide motif that mediates protein-protein interaction and defines adaptor proteins for DDB1/cullin 4 ubiquitin ligases." [PMID:18794354, PMID:19818632]	6699483	SOFA	SOFA	sequence	9	SO	region	DDB_box
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001804	"A conserved polypeptide motif that mediates protein-protein interaction and defines adaptor proteins for DDB1/cullin 4 ubiquitin ligases." [PMID:18794354, PMID:19818632]	4002695	biosapiens	biosapiens	sequence	5	SO	polypeptide_conserved_region	DDB_box
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001804	"A conserved polypeptide motif that mediates protein-protein interaction and defines adaptor proteins for DDB1/cullin 4 ubiquitin ligases." [PMID:18794354, PMID:19818632]	6807607	SOFA	SOFA	sequence	10	SO	sequence_feature	DDB_box
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001804	"A conserved polypeptide motif that mediates protein-protein interaction and defines adaptor proteins for DDB1/cullin 4 ubiquitin ligases." [PMID:18794354, PMID:19818632]	4966938	biosapiens	biosapiens,SOFA	sequence	6	SO	polypeptide_region	DDB_box
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001804	"A conserved polypeptide motif that mediates protein-protein interaction and defines adaptor proteins for DDB1/cullin 4 ubiquitin ligases." [PMID:18794354, PMID:19818632]	5741514	biosapiens,SOFA	SOFA	sequence	7	SO	polypeptide	DDB_box
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001804	"A conserved polypeptide motif that mediates protein-protein interaction and defines adaptor proteins for DDB1/cullin 4 ubiquitin ligases." [PMID:18794354, PMID:19818632]	5741515	biosapiens,SOFA	SOFA	sequence	7	SO	biological_region	DDB_box
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001804	"A conserved polypeptide motif that mediates protein-protein interaction and defines adaptor proteins for DDB1/cullin 4 ubiquitin ligases." [PMID:18794354, PMID:19818632]	6311234	SOFA	SOFA	sequence	8	SO	biological_region	DDB_box
SO:0001805	\N	\N	"A conserved polypeptide motif that can be recognized by both Fizzy/Cdc20- and FZR/Cdh1-activated anaphase-promoting complex/cyclosome (APC/C) and targets a protein for ubiquitination and subsequent degradation by the APC/C. The consensus sequence is RXXLXXXXN." [PMID:12208841, PMID:1842691]	SO:0001805	"A conserved polypeptide motif that can be recognized by both Fizzy/Cdc20- and FZR/Cdh1-activated anaphase-promoting complex/cyclosome (APC/C) and targets a protein for ubiquitination and subsequent degradation by the APC/C. The consensus sequence is RXXLXXXXN." [PMID:12208841, PMID:1842691]	46669	\N	\N	sequence	0	SO	destruction_box	destruction_box
SO:0100017	SO:0001805	\N	"A conserved motif is a short (up to 20 amino acids) region of biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001805	"A conserved polypeptide motif that can be recognized by both Fizzy/Cdc20- and FZR/Cdh1-activated anaphase-promoting complex/cyclosome (APC/C) and targets a protein for ubiquitination and subsequent degradation by the APC/C. The consensus sequence is RXXLXXXXN." [PMID:12208841, PMID:1842691]	491453	\N	biosapiens	sequence	1	SO	polypeptide_conserved_motif	destruction_box
SO:0001067	SO:0100017	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001805	"A conserved polypeptide motif that can be recognized by both Fizzy/Cdc20- and FZR/Cdh1-activated anaphase-promoting complex/cyclosome (APC/C) and targets a protein for ubiquitination and subsequent degradation by the APC/C. The consensus sequence is RXXLXXXXN." [PMID:12208841, PMID:1842691]	1074072	biosapiens	biosapiens	sequence	2	SO	polypeptide_motif	destruction_box
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001805	"A conserved polypeptide motif that can be recognized by both Fizzy/Cdc20- and FZR/Cdh1-activated anaphase-promoting complex/cyclosome (APC/C) and targets a protein for ubiquitination and subsequent degradation by the APC/C. The consensus sequence is RXXLXXXXN." [PMID:12208841, PMID:1842691]	1905196	biosapiens	biosapiens	sequence	3	SO	polypeptide_conserved_region	destruction_box
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001805	"A conserved polypeptide motif that can be recognized by both Fizzy/Cdc20- and FZR/Cdh1-activated anaphase-promoting complex/cyclosome (APC/C) and targets a protein for ubiquitination and subsequent degradation by the APC/C. The consensus sequence is RXXLXXXXN." [PMID:12208841, PMID:1842691]	2929619	biosapiens	biosapiens,SOFA	sequence	4	SO	polypeptide_region	destruction_box
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001805	"A conserved polypeptide motif that can be recognized by both Fizzy/Cdc20- and FZR/Cdh1-activated anaphase-promoting complex/cyclosome (APC/C) and targets a protein for ubiquitination and subsequent degradation by the APC/C. The consensus sequence is RXXLXXXXN." [PMID:12208841, PMID:1842691]	4002696	biosapiens,SOFA	SOFA	sequence	5	SO	polypeptide	destruction_box
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001805	"A conserved polypeptide motif that can be recognized by both Fizzy/Cdc20- and FZR/Cdh1-activated anaphase-promoting complex/cyclosome (APC/C) and targets a protein for ubiquitination and subsequent degradation by the APC/C. The consensus sequence is RXXLXXXXN." [PMID:12208841, PMID:1842691]	4002697	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	destruction_box
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001805	"A conserved polypeptide motif that can be recognized by both Fizzy/Cdc20- and FZR/Cdh1-activated anaphase-promoting complex/cyclosome (APC/C) and targets a protein for ubiquitination and subsequent degradation by the APC/C. The consensus sequence is RXXLXXXXN." [PMID:12208841, PMID:1842691]	4966939	SOFA	SOFA	sequence	6	SO	biological_region	destruction_box
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001805	"A conserved polypeptide motif that can be recognized by both Fizzy/Cdc20- and FZR/Cdh1-activated anaphase-promoting complex/cyclosome (APC/C) and targets a protein for ubiquitination and subsequent degradation by the APC/C. The consensus sequence is RXXLXXXXN." [PMID:12208841, PMID:1842691]	5741516	SOFA	SOFA	sequence	7	SO	region	destruction_box
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001805	"A conserved polypeptide motif that can be recognized by both Fizzy/Cdc20- and FZR/Cdh1-activated anaphase-promoting complex/cyclosome (APC/C) and targets a protein for ubiquitination and subsequent degradation by the APC/C. The consensus sequence is RXXLXXXXN." [PMID:12208841, PMID:1842691]	6146679	SOFA	SOFA	sequence	8	SO	sequence_feature	destruction_box
SO:0001806	\N	\N	"A C-terminal tetrapeptide motif that mediates retention of a protein in (or retrieval to) the endoplasmic reticulum. In mammals the sequence is KDEL, and in fungi HDEL or DDEL." [doi:10.1093/jxb/50.331.157, PMID:2077689]	SO:0001806	"A C-terminal tetrapeptide motif that mediates retention of a protein in (or retrieval to) the endoplasmic reticulum. In mammals the sequence is KDEL, and in fungi HDEL or DDEL." [doi:10.1093/jxb/50.331.157, PMID:2077689]	46670	\N	\N	sequence	0	SO	ER_retention_signal	ER_retention_signal
SO:0001527	SO:0001806	\N	"A region of peptide sequence used to target the polypeptide molecule to a specific organelle." [SO:ke]	SO:0001806	"A C-terminal tetrapeptide motif that mediates retention of a protein in (or retrieval to) the endoplasmic reticulum. In mammals the sequence is KDEL, and in fungi HDEL or DDEL." [doi:10.1093/jxb/50.331.157, PMID:2077689]	491454	\N	SOFA	sequence	1	SO	peptide_localization_signal	ER_retention_signal
SO:0000839	SO:0001527	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001806	"A C-terminal tetrapeptide motif that mediates retention of a protein in (or retrieval to) the endoplasmic reticulum. In mammals the sequence is KDEL, and in fungi HDEL or DDEL." [doi:10.1093/jxb/50.331.157, PMID:2077689]	1074073	SOFA	biosapiens,SOFA	sequence	2	SO	polypeptide_region	ER_retention_signal
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001806	"A C-terminal tetrapeptide motif that mediates retention of a protein in (or retrieval to) the endoplasmic reticulum. In mammals the sequence is KDEL, and in fungi HDEL or DDEL." [doi:10.1093/jxb/50.331.157, PMID:2077689]	1905197	biosapiens,SOFA	SOFA	sequence	3	SO	polypeptide	ER_retention_signal
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001806	"A C-terminal tetrapeptide motif that mediates retention of a protein in (or retrieval to) the endoplasmic reticulum. In mammals the sequence is KDEL, and in fungi HDEL or DDEL." [doi:10.1093/jxb/50.331.157, PMID:2077689]	1905198	biosapiens,SOFA	SOFA	sequence	3	SO	biological_region	ER_retention_signal
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001806	"A C-terminal tetrapeptide motif that mediates retention of a protein in (or retrieval to) the endoplasmic reticulum. In mammals the sequence is KDEL, and in fungi HDEL or DDEL." [doi:10.1093/jxb/50.331.157, PMID:2077689]	2929620	SOFA	SOFA	sequence	4	SO	biological_region	ER_retention_signal
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001806	"A C-terminal tetrapeptide motif that mediates retention of a protein in (or retrieval to) the endoplasmic reticulum. In mammals the sequence is KDEL, and in fungi HDEL or DDEL." [doi:10.1093/jxb/50.331.157, PMID:2077689]	4002698	SOFA	SOFA	sequence	5	SO	region	ER_retention_signal
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001806	"A C-terminal tetrapeptide motif that mediates retention of a protein in (or retrieval to) the endoplasmic reticulum. In mammals the sequence is KDEL, and in fungi HDEL or DDEL." [doi:10.1093/jxb/50.331.157, PMID:2077689]	4385858	SOFA	SOFA	sequence	6	SO	sequence_feature	ER_retention_signal
SO:0001807	\N	\N	"A conserved polypeptide motif that can be recognized by FZR/Cdh1-activated anaphase-promoting complex/cyclosome (APC/C) and targets a protein for ubiquitination and subsequent degradation by the APC/C. The consensus sequence is KENXXXN." [PMID:10733526, PMID:1220884, PMID:18426916]	SO:0001807	"A conserved polypeptide motif that can be recognized by FZR/Cdh1-activated anaphase-promoting complex/cyclosome (APC/C) and targets a protein for ubiquitination and subsequent degradation by the APC/C. The consensus sequence is KENXXXN." [PMID:10733526, PMID:1220884, PMID:18426916]	46671	\N	\N	sequence	0	SO	KEN_box	KEN_box
SO:0100017	SO:0001807	\N	"A conserved motif is a short (up to 20 amino acids) region of biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001807	"A conserved polypeptide motif that can be recognized by FZR/Cdh1-activated anaphase-promoting complex/cyclosome (APC/C) and targets a protein for ubiquitination and subsequent degradation by the APC/C. The consensus sequence is KENXXXN." [PMID:10733526, PMID:1220884, PMID:18426916]	491455	\N	biosapiens	sequence	1	SO	polypeptide_conserved_motif	KEN_box
SO:0001067	SO:0100017	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001807	"A conserved polypeptide motif that can be recognized by FZR/Cdh1-activated anaphase-promoting complex/cyclosome (APC/C) and targets a protein for ubiquitination and subsequent degradation by the APC/C. The consensus sequence is KENXXXN." [PMID:10733526, PMID:1220884, PMID:18426916]	1074074	biosapiens	biosapiens	sequence	2	SO	polypeptide_motif	KEN_box
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001807	"A conserved polypeptide motif that can be recognized by FZR/Cdh1-activated anaphase-promoting complex/cyclosome (APC/C) and targets a protein for ubiquitination and subsequent degradation by the APC/C. The consensus sequence is KENXXXN." [PMID:10733526, PMID:1220884, PMID:18426916]	1905199	biosapiens	biosapiens	sequence	3	SO	polypeptide_conserved_region	KEN_box
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001807	"A conserved polypeptide motif that can be recognized by FZR/Cdh1-activated anaphase-promoting complex/cyclosome (APC/C) and targets a protein for ubiquitination and subsequent degradation by the APC/C. The consensus sequence is KENXXXN." [PMID:10733526, PMID:1220884, PMID:18426916]	2929622	biosapiens	biosapiens,SOFA	sequence	4	SO	polypeptide_region	KEN_box
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001807	"A conserved polypeptide motif that can be recognized by FZR/Cdh1-activated anaphase-promoting complex/cyclosome (APC/C) and targets a protein for ubiquitination and subsequent degradation by the APC/C. The consensus sequence is KENXXXN." [PMID:10733526, PMID:1220884, PMID:18426916]	4002700	biosapiens,SOFA	SOFA	sequence	5	SO	polypeptide	KEN_box
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001807	"A conserved polypeptide motif that can be recognized by FZR/Cdh1-activated anaphase-promoting complex/cyclosome (APC/C) and targets a protein for ubiquitination and subsequent degradation by the APC/C. The consensus sequence is KENXXXN." [PMID:10733526, PMID:1220884, PMID:18426916]	4002701	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	KEN_box
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001807	"A conserved polypeptide motif that can be recognized by FZR/Cdh1-activated anaphase-promoting complex/cyclosome (APC/C) and targets a protein for ubiquitination and subsequent degradation by the APC/C. The consensus sequence is KENXXXN." [PMID:10733526, PMID:1220884, PMID:18426916]	4966941	SOFA	SOFA	sequence	6	SO	biological_region	KEN_box
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001807	"A conserved polypeptide motif that can be recognized by FZR/Cdh1-activated anaphase-promoting complex/cyclosome (APC/C) and targets a protein for ubiquitination and subsequent degradation by the APC/C. The consensus sequence is KENXXXN." [PMID:10733526, PMID:1220884, PMID:18426916]	5741518	SOFA	SOFA	sequence	7	SO	region	KEN_box
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001807	"A conserved polypeptide motif that can be recognized by FZR/Cdh1-activated anaphase-promoting complex/cyclosome (APC/C) and targets a protein for ubiquitination and subsequent degradation by the APC/C. The consensus sequence is KENXXXN." [PMID:10733526, PMID:1220884, PMID:18426916]	6146680	SOFA	SOFA	sequence	8	SO	sequence_feature	KEN_box
SO:0001808	\N	\N	"A polypeptide region that targets a polypeptide to the mitochondrion." [PomBase:mah]	SO:0001808	"A polypeptide region that targets a polypeptide to the mitochondrion." [PomBase:mah]	46672	\N	\N	sequence	0	SO	mitochondrial_targeting_signal	mitochondrial_targeting_signal
SO:0001527	SO:0001808	\N	"A region of peptide sequence used to target the polypeptide molecule to a specific organelle." [SO:ke]	SO:0001808	"A polypeptide region that targets a polypeptide to the mitochondrion." [PomBase:mah]	491456	\N	SOFA	sequence	1	SO	peptide_localization_signal	mitochondrial_targeting_signal
SO:0000839	SO:0001527	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001808	"A polypeptide region that targets a polypeptide to the mitochondrion." [PomBase:mah]	1074075	SOFA	biosapiens,SOFA	sequence	2	SO	polypeptide_region	mitochondrial_targeting_signal
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001808	"A polypeptide region that targets a polypeptide to the mitochondrion." [PomBase:mah]	1905200	biosapiens,SOFA	SOFA	sequence	3	SO	polypeptide	mitochondrial_targeting_signal
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001808	"A polypeptide region that targets a polypeptide to the mitochondrion." [PomBase:mah]	1905201	biosapiens,SOFA	SOFA	sequence	3	SO	biological_region	mitochondrial_targeting_signal
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001808	"A polypeptide region that targets a polypeptide to the mitochondrion." [PomBase:mah]	2929623	SOFA	SOFA	sequence	4	SO	biological_region	mitochondrial_targeting_signal
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001808	"A polypeptide region that targets a polypeptide to the mitochondrion." [PomBase:mah]	4002702	SOFA	SOFA	sequence	5	SO	region	mitochondrial_targeting_signal
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001808	"A polypeptide region that targets a polypeptide to the mitochondrion." [PomBase:mah]	4385859	SOFA	SOFA	sequence	6	SO	sequence_feature	mitochondrial_targeting_signal
SO:0001809	\N	\N	"A signal sequence that is not cleaved from the polypeptide. Anchors a Type II membrane protein to the membrane." [http://www.cbs.dtu.dk/services/SignalP/background/biobackground.php]	SO:0001809	"A signal sequence that is not cleaved from the polypeptide. Anchors a Type II membrane protein to the membrane." [http://www.cbs.dtu.dk/services/SignalP/background/biobackground.php]	46673	\N	\N	sequence	0	SO	signal_anchor	signal_anchor
SO:0000418	SO:0001809	\N	"The signal_peptide is a short region of the peptide located at the N-terminus that directs the protein to be secreted or part of membrane components." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001809	"A signal sequence that is not cleaved from the polypeptide. Anchors a Type II membrane protein to the membrane." [http://www.cbs.dtu.dk/services/SignalP/background/biobackground.php]	491457	\N	biosapiens,SOFA	sequence	1	SO	signal_peptide	signal_anchor
SO:0001062	SO:0000418	\N	"Part of a peptide chain which is cleaved off during the formation of the mature protein." [EBIBS:GAR]	SO:0001809	"A signal sequence that is not cleaved from the polypeptide. Anchors a Type II membrane protein to the membrane." [http://www.cbs.dtu.dk/services/SignalP/background/biobackground.php]	1074076	biosapiens,SOFA	biosapiens	sequence	2	SO	propeptide	signal_anchor
SO:0001527	SO:0000418	\N	"A region of peptide sequence used to target the polypeptide molecule to a specific organelle." [SO:ke]	SO:0001809	"A signal sequence that is not cleaved from the polypeptide. Anchors a Type II membrane protein to the membrane." [http://www.cbs.dtu.dk/services/SignalP/background/biobackground.php]	1074077	biosapiens,SOFA	SOFA	sequence	2	SO	peptide_localization_signal	signal_anchor
SO:0100011	SO:0001062	\N	"The cleaved_peptide_region is the region of a peptide sequence that is cleaved during maturation." [EBIBS:GAR]	SO:0001809	"A signal sequence that is not cleaved from the polypeptide. Anchors a Type II membrane protein to the membrane." [http://www.cbs.dtu.dk/services/SignalP/background/biobackground.php]	1905202	biosapiens	biosapiens,SOFA	sequence	3	SO	cleaved_peptide_region	signal_anchor
SO:0000839	SO:0001527	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001809	"A signal sequence that is not cleaved from the polypeptide. Anchors a Type II membrane protein to the membrane." [http://www.cbs.dtu.dk/services/SignalP/background/biobackground.php]	1905203	SOFA	biosapiens,SOFA	sequence	3	SO	polypeptide_region	signal_anchor
SO:0000839	SO:0100011	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001809	"A signal sequence that is not cleaved from the polypeptide. Anchors a Type II membrane protein to the membrane." [http://www.cbs.dtu.dk/services/SignalP/background/biobackground.php]	2929625	biosapiens,SOFA	biosapiens,SOFA	sequence	4	SO	polypeptide_region	signal_anchor
SO:0001063	SO:0100011	\N	"An immature_peptide_region is the extent of the peptide after it has been translated and before any processing occurs." [EBIBS:GAR]	SO:0001809	"A signal sequence that is not cleaved from the polypeptide. Anchors a Type II membrane protein to the membrane." [http://www.cbs.dtu.dk/services/SignalP/background/biobackground.php]	2929626	biosapiens,SOFA	biosapiens,SOFA	sequence	4	SO	immature_peptide_region	signal_anchor
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001809	"A signal sequence that is not cleaved from the polypeptide. Anchors a Type II membrane protein to the membrane." [http://www.cbs.dtu.dk/services/SignalP/background/biobackground.php]	4966943	biosapiens,SOFA	SOFA	sequence	6	SO	polypeptide	signal_anchor
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001809	"A signal sequence that is not cleaved from the polypeptide. Anchors a Type II membrane protein to the membrane." [http://www.cbs.dtu.dk/services/SignalP/background/biobackground.php]	4966944	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	signal_anchor
SO:0000839	SO:0001063	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001809	"A signal sequence that is not cleaved from the polypeptide. Anchors a Type II membrane protein to the membrane." [http://www.cbs.dtu.dk/services/SignalP/background/biobackground.php]	4002706	biosapiens,SOFA	biosapiens,SOFA	sequence	5	SO	polypeptide_region	signal_anchor
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001809	"A signal sequence that is not cleaved from the polypeptide. Anchors a Type II membrane protein to the membrane." [http://www.cbs.dtu.dk/services/SignalP/background/biobackground.php]	5180752	SOFA	SOFA	sequence	7	SO	biological_region	signal_anchor
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001809	"A signal sequence that is not cleaved from the polypeptide. Anchors a Type II membrane protein to the membrane." [http://www.cbs.dtu.dk/services/SignalP/background/biobackground.php]	5996459	SOFA	SOFA	sequence	8	SO	region	signal_anchor
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001809	"A signal sequence that is not cleaved from the polypeptide. Anchors a Type II membrane protein to the membrane." [http://www.cbs.dtu.dk/services/SignalP/background/biobackground.php]	6469772	SOFA	SOFA	sequence	9	SO	sequence_feature	signal_anchor
SO:0001810	\N	\N	"A polypeptide region that mediates binding to PCNA. The consensus sequence is QXX(hh)XX(aa), where (h) denotes residues with moderately hydrophobic side chains and (a) denotes residues with highly hydrophobic aromatic side chains." [PMID:9631646]	SO:0001810	"A polypeptide region that mediates binding to PCNA. The consensus sequence is QXX(hh)XX(aa), where (h) denotes residues with moderately hydrophobic side chains and (a) denotes residues with highly hydrophobic aromatic side chains." [PMID:9631646]	46674	\N	\N	sequence	0	SO	PIP_box	PIP_box
SO:0001093	SO:0001810	\N	"A binding site that, in the protein molecule, interacts selectively and non-covalently with polypeptide residues." [EBIBS:GAR, UniProt:Curation_manual]	SO:0001810	"A polypeptide region that mediates binding to PCNA. The consensus sequence is QXX(hh)XX(aa), where (h) denotes residues with moderately hydrophobic side chains and (a) denotes residues with highly hydrophobic aromatic side chains." [PMID:9631646]	491458	\N	biosapiens	sequence	1	SO	protein_protein_contact	PIP_box
SO:0000410	SO:0001093	\N	"A binding site that, in the molecule, interacts selectively and non-covalently with polypeptide molecules." [SO:ke]	SO:0001810	"A polypeptide region that mediates binding to PCNA. The consensus sequence is QXX(hh)XX(aa), where (h) denotes residues with moderately hydrophobic side chains and (a) denotes residues with highly hydrophobic aromatic side chains." [PMID:9631646]	1074078	biosapiens	SOFA	sequence	2	SO	protein_binding_site	PIP_box
SO:0100002	SO:0001093	\N	"A region that is involved a contact with another molecule." [EBIBS:GAR]	SO:0001810	"A polypeptide region that mediates binding to PCNA. The consensus sequence is QXX(hh)XX(aa), where (h) denotes residues with moderately hydrophobic side chains and (a) denotes residues with highly hydrophobic aromatic side chains." [PMID:9631646]	1074079	biosapiens	biosapiens	sequence	2	SO	molecular_contact_region	PIP_box
SO:0000409	SO:0000410	\N	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0001810	"A polypeptide region that mediates binding to PCNA. The consensus sequence is QXX(hh)XX(aa), where (h) denotes residues with moderately hydrophobic side chains and (a) denotes residues with highly hydrophobic aromatic side chains." [PMID:9631646]	1905204	SOFA	biosapiens,SOFA	sequence	3	SO	binding_site	PIP_box
SO:0100001	SO:0100002	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001810	"A polypeptide region that mediates binding to PCNA. The consensus sequence is QXX(hh)XX(aa), where (h) denotes residues with moderately hydrophobic side chains and (a) denotes residues with highly hydrophobic aromatic side chains." [PMID:9631646]	1905205	biosapiens	biosapiens	sequence	3	SO	biochemical_region_of_peptide	PIP_box
SO:0001411	SO:0000409	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001810	"A polypeptide region that mediates binding to PCNA. The consensus sequence is QXX(hh)XX(aa), where (h) denotes residues with moderately hydrophobic side chains and (a) denotes residues with highly hydrophobic aromatic side chains." [PMID:9631646]	2929629	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	PIP_box
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001810	"A polypeptide region that mediates binding to PCNA. The consensus sequence is QXX(hh)XX(aa), where (h) denotes residues with moderately hydrophobic side chains and (a) denotes residues with highly hydrophobic aromatic side chains." [PMID:9631646]	2929630	biosapiens	biosapiens	sequence	4	SO	polypeptide_motif	PIP_box
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001810	"A polypeptide region that mediates binding to PCNA. The consensus sequence is QXX(hh)XX(aa), where (h) denotes residues with moderately hydrophobic side chains and (a) denotes residues with highly hydrophobic aromatic side chains." [PMID:9631646]	6699484	SOFA	SOFA	sequence	9	SO	region	PIP_box
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001810	"A polypeptide region that mediates binding to PCNA. The consensus sequence is QXX(hh)XX(aa), where (h) denotes residues with moderately hydrophobic side chains and (a) denotes residues with highly hydrophobic aromatic side chains." [PMID:9631646]	4002710	biosapiens	biosapiens	sequence	5	SO	polypeptide_conserved_region	PIP_box
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001810	"A polypeptide region that mediates binding to PCNA. The consensus sequence is QXX(hh)XX(aa), where (h) denotes residues with moderately hydrophobic side chains and (a) denotes residues with highly hydrophobic aromatic side chains." [PMID:9631646]	6807608	SOFA	SOFA	sequence	10	SO	sequence_feature	PIP_box
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001810	"A polypeptide region that mediates binding to PCNA. The consensus sequence is QXX(hh)XX(aa), where (h) denotes residues with moderately hydrophobic side chains and (a) denotes residues with highly hydrophobic aromatic side chains." [PMID:9631646]	4966947	biosapiens	biosapiens,SOFA	sequence	6	SO	polypeptide_region	PIP_box
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001810	"A polypeptide region that mediates binding to PCNA. The consensus sequence is QXX(hh)XX(aa), where (h) denotes residues with moderately hydrophobic side chains and (a) denotes residues with highly hydrophobic aromatic side chains." [PMID:9631646]	5741520	biosapiens,SOFA	SOFA	sequence	7	SO	polypeptide	PIP_box
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001810	"A polypeptide region that mediates binding to PCNA. The consensus sequence is QXX(hh)XX(aa), where (h) denotes residues with moderately hydrophobic side chains and (a) denotes residues with highly hydrophobic aromatic side chains." [PMID:9631646]	5741521	biosapiens,SOFA	SOFA	sequence	7	SO	biological_region	PIP_box
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001810	"A polypeptide region that mediates binding to PCNA. The consensus sequence is QXX(hh)XX(aa), where (h) denotes residues with moderately hydrophobic side chains and (a) denotes residues with highly hydrophobic aromatic side chains." [PMID:9631646]	6311236	SOFA	SOFA	sequence	8	SO	biological_region	PIP_box
SO:0001811	\N	\N	"A post-translationally modified region in which residues of the protein are modified by phosphorylation." [PomBase:mah]	SO:0001811	"A post-translationally modified region in which residues of the protein are modified by phosphorylation." [PomBase:mah]	46675	\N	\N	sequence	0	SO	phosphorylation_site	phosphorylation_site
SO:0001089	SO:0001811	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001811	"A post-translationally modified region in which residues of the protein are modified by phosphorylation." [PomBase:mah]	491459	\N	biosapiens	sequence	1	SO	post_translationally_modified_region	phosphorylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001811	"A post-translationally modified region in which residues of the protein are modified by phosphorylation." [PomBase:mah]	1074080	biosapiens	biosapiens	sequence	2	SO	biochemical_region_of_peptide	phosphorylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001811	"A post-translationally modified region in which residues of the protein are modified by phosphorylation." [PomBase:mah]	1905206	biosapiens	biosapiens	sequence	3	SO	polypeptide_motif	phosphorylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001811	"A post-translationally modified region in which residues of the protein are modified by phosphorylation." [PomBase:mah]	2929631	biosapiens	biosapiens	sequence	4	SO	polypeptide_conserved_region	phosphorylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001811	"A post-translationally modified region in which residues of the protein are modified by phosphorylation." [PomBase:mah]	4002711	biosapiens	biosapiens,SOFA	sequence	5	SO	polypeptide_region	phosphorylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001811	"A post-translationally modified region in which residues of the protein are modified by phosphorylation." [PomBase:mah]	4966948	biosapiens,SOFA	SOFA	sequence	6	SO	polypeptide	phosphorylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001811	"A post-translationally modified region in which residues of the protein are modified by phosphorylation." [PomBase:mah]	4966949	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	phosphorylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001811	"A post-translationally modified region in which residues of the protein are modified by phosphorylation." [PomBase:mah]	5741522	SOFA	SOFA	sequence	7	SO	biological_region	phosphorylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001811	"A post-translationally modified region in which residues of the protein are modified by phosphorylation." [PomBase:mah]	6311238	SOFA	SOFA	sequence	8	SO	region	phosphorylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001811	"A post-translationally modified region in which residues of the protein are modified by phosphorylation." [PomBase:mah]	6631419	SOFA	SOFA	sequence	9	SO	sequence_feature	phosphorylation_site
SO:0001812	\N	\N	"A region that traverses the lipid bilayer and adopts a helical secondary structure." [PomBase:mah]	SO:0001812	"A region that traverses the lipid bilayer and adopts a helical secondary structure." [PomBase:mah]	46676	\N	\N	sequence	0	SO	transmembrane_helix	transmembrane_helix
SO:0001077	SO:0001812	\N	"Polypeptide region traversing the lipid bilayer." [EBIBS:GAR, UniProt:curator_manual]	SO:0001812	"A region that traverses the lipid bilayer and adopts a helical secondary structure." [PomBase:mah]	491460	\N	biosapiens	sequence	1	SO	transmembrane_polypeptide_region	transmembrane_helix
SO:0001114	SO:0001812	\N	"A helix is a secondary_structure conformation where the peptide backbone forms a coil." [EBIBS:GAR]	SO:0001812	"A region that traverses the lipid bilayer and adopts a helical secondary structure." [PomBase:mah]	491461	\N	biosapiens	sequence	1	SO	peptide_helix	transmembrane_helix
SO:0001075	SO:0001077	\N	"Polypeptide region present in the lipid bilayer." [EBIBS:GAR]	SO:0001812	"A region that traverses the lipid bilayer and adopts a helical secondary structure." [PomBase:mah]	1074081	biosapiens	biosapiens	sequence	2	SO	intramembrane_polypeptide_region	transmembrane_helix
SO:0001078	SO:0001114	\N	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0001812	"A region that traverses the lipid bilayer and adopts a helical secondary structure." [PomBase:mah]	1074082	biosapiens	biosapiens	sequence	2	SO	polypeptide_secondary_structure	transmembrane_helix
SO:0001070	SO:0001075	\N	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001812	"A region that traverses the lipid bilayer and adopts a helical secondary structure." [PomBase:mah]	1905207	biosapiens	biosapiens	sequence	3	SO	polypeptide_structural_region	transmembrane_helix
SO:0001071	SO:0001075	\N	"Arrangement of the polypeptide with respect to the lipid bilayer." [EBIBS:GAR]	SO:0001812	"A region that traverses the lipid bilayer and adopts a helical secondary structure." [PomBase:mah]	1905208	biosapiens	biosapiens	sequence	3	SO	membrane_structure	transmembrane_helix
SO:0001070	SO:0001078	\N	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001812	"A region that traverses the lipid bilayer and adopts a helical secondary structure." [PomBase:mah]	1905209	biosapiens	biosapiens	sequence	3	SO	polypeptide_structural_region	transmembrane_helix
SO:0000839	SO:0001070	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001812	"A region that traverses the lipid bilayer and adopts a helical secondary structure." [PomBase:mah]	4002714	biosapiens	biosapiens,SOFA	sequence	5	SO	polypeptide_region	transmembrane_helix
SO:0001070	SO:0001071	\N	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0001812	"A region that traverses the lipid bilayer and adopts a helical secondary structure." [PomBase:mah]	2929633	biosapiens	biosapiens	sequence	4	SO	polypeptide_structural_region	transmembrane_helix
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001812	"A region that traverses the lipid bilayer and adopts a helical secondary structure." [PomBase:mah]	4385862	biosapiens,SOFA	SOFA	sequence	6	SO	polypeptide	transmembrane_helix
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001812	"A region that traverses the lipid bilayer and adopts a helical secondary structure." [PomBase:mah]	4385863	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	transmembrane_helix
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001812	"A region that traverses the lipid bilayer and adopts a helical secondary structure." [PomBase:mah]	5407486	SOFA	SOFA	sequence	7	SO	biological_region	transmembrane_helix
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001812	"A region that traverses the lipid bilayer and adopts a helical secondary structure." [PomBase:mah]	6146681	SOFA	SOFA	sequence	8	SO	region	transmembrane_helix
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001812	"A region that traverses the lipid bilayer and adopts a helical secondary structure." [PomBase:mah]	6550292	SOFA	SOFA	sequence	9	SO	sequence_feature	transmembrane_helix
SO:0001813	\N	\N	"A polypeptide region that targets a polypeptide to the vacuole." [PomBase:mah]	SO:0001813	"A polypeptide region that targets a polypeptide to the vacuole." [PomBase:mah]	46677	\N	\N	sequence	0	SO	vacuolar_sorting_signal	vacuolar_sorting_signal
SO:0001527	SO:0001813	\N	"A region of peptide sequence used to target the polypeptide molecule to a specific organelle." [SO:ke]	SO:0001813	"A polypeptide region that targets a polypeptide to the vacuole." [PomBase:mah]	491462	\N	SOFA	sequence	1	SO	peptide_localization_signal	vacuolar_sorting_signal
SO:0000839	SO:0001527	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001813	"A polypeptide region that targets a polypeptide to the vacuole." [PomBase:mah]	1074083	SOFA	biosapiens,SOFA	sequence	2	SO	polypeptide_region	vacuolar_sorting_signal
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001813	"A polypeptide region that targets a polypeptide to the vacuole." [PomBase:mah]	1905210	biosapiens,SOFA	SOFA	sequence	3	SO	polypeptide	vacuolar_sorting_signal
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001813	"A polypeptide region that targets a polypeptide to the vacuole." [PomBase:mah]	1905211	biosapiens,SOFA	SOFA	sequence	3	SO	biological_region	vacuolar_sorting_signal
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001813	"A polypeptide region that targets a polypeptide to the vacuole." [PomBase:mah]	2929634	SOFA	SOFA	sequence	4	SO	biological_region	vacuolar_sorting_signal
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001813	"A polypeptide region that targets a polypeptide to the vacuole." [PomBase:mah]	4002715	SOFA	SOFA	sequence	5	SO	region	vacuolar_sorting_signal
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001813	"A polypeptide region that targets a polypeptide to the vacuole." [PomBase:mah]	4385864	SOFA	SOFA	sequence	6	SO	sequence_feature	vacuolar_sorting_signal
SO:0001814	\N	\N	"" []	SO:0001814	"" []	46678	\N	\N	sequence	0	SO	coding_variant_quality	coding_variant_quality
SO:0001761	SO:0001814	\N	"A dependent entity that inheres in a bearer, a sequence variant." [PMID:17597783, SO:ke]	SO:0001814	"" []	491463	\N	\N	sequence	1	SO	variant_quality	coding_variant_quality
SO:0000400	SO:0001761	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001814	"" []	1074084	\N	\N	sequence	2	SO	sequence_attribute	coding_variant_quality
SO:0001815	\N	\N	"" []	SO:0001815	"" []	46679	\N	\N	sequence	0	SO	synonymous	synonymous
SO:0001814	SO:0001815	\N	"" []	SO:0001815	"" []	491464	\N	\N	sequence	1	SO	coding_variant_quality	synonymous
SO:0001761	SO:0001814	\N	"A dependent entity that inheres in a bearer, a sequence variant." [PMID:17597783, SO:ke]	SO:0001815	"" []	1074085	\N	\N	sequence	2	SO	variant_quality	synonymous
SO:0000400	SO:0001761	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001815	"" []	1905212	\N	\N	sequence	3	SO	sequence_attribute	synonymous
SO:0001816	\N	\N	"" []	SO:0001816	"" []	46680	\N	\N	sequence	0	SO	non_synonymous	non_synonymous
SO:0001814	SO:0001816	\N	"" []	SO:0001816	"" []	491465	\N	\N	sequence	1	SO	coding_variant_quality	non_synonymous
SO:0001761	SO:0001814	\N	"A dependent entity that inheres in a bearer, a sequence variant." [PMID:17597783, SO:ke]	SO:0001816	"" []	1074086	\N	\N	sequence	2	SO	variant_quality	non_synonymous
SO:0000400	SO:0001761	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001816	"" []	1905213	\N	\N	sequence	3	SO	sequence_attribute	non_synonymous
SO:0001817	\N	\N	"An attribute describing a sequence that contains a mutation involving the deletion or insertion of one or more bases, where this number is divisible by 3." [SO:ke]	SO:0001817	"An attribute describing a sequence that contains a mutation involving the deletion or insertion of one or more bases, where this number is divisible by 3." [SO:ke]	46681	\N	\N	sequence	0	SO	inframe	inframe
SO:0000863	SO:0001817	\N	"An attribute describing an mRNA feature." [SO:ke]	SO:0001817	"An attribute describing a sequence that contains a mutation involving the deletion or insertion of one or more bases, where this number is divisible by 3." [SO:ke]	491466	\N	\N	sequence	1	SO	mRNA_attribute	inframe
SO:0000237	SO:0000863	\N	"" []	SO:0001817	"An attribute describing a sequence that contains a mutation involving the deletion or insertion of one or more bases, where this number is divisible by 3." [SO:ke]	1074087	\N	\N	sequence	2	SO	transcript_attribute	inframe
SO:0000733	SO:0000237	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0001817	"An attribute describing a sequence that contains a mutation involving the deletion or insertion of one or more bases, where this number is divisible by 3." [SO:ke]	1905214	\N	\N	sequence	3	SO	feature_attribute	inframe
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0001817	"An attribute describing a sequence that contains a mutation involving the deletion or insertion of one or more bases, where this number is divisible by 3." [SO:ke]	2929636	\N	\N	sequence	4	SO	sequence_attribute	inframe
SO:0001818	\N	\N	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	SO:0001818	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	46682	\N	\N	sequence	0	SO	protein_altering_variant	protein_altering_variant
SO:0001580	SO:0001818	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001818	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	491467	\N	\N	sequence	1	SO	coding_sequence_variant	protein_altering_variant
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001818	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	1074088	\N	\N	sequence	2	SO	exon_variant	protein_altering_variant
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001818	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	1074089	\N	\N	sequence	2	SO	coding_transcript_variant	protein_altering_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001818	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	1905215	\N	\N	sequence	3	SO	transcript_variant	protein_altering_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001818	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	1905216	\N	\N	sequence	3	SO	transcript_variant	protein_altering_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001818	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	2929637	\N	\N	sequence	4	SO	gene_variant	protein_altering_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001818	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	4002717	\N	\N	sequence	5	SO	feature_variant	protein_altering_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001818	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	4966952	\N	\N	sequence	6	SO	structural_variant	protein_altering_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001818	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	5741525	\N	\N	sequence	7	SO	sequence_variant	protein_altering_variant
SO:0001819	\N	\N	"A sequence variant where there is no resulting change to the encoded amino acid." [SO:ke]	SO:0001819	"A sequence variant where there is no resulting change to the encoded amino acid." [SO:ke]	46683	\N	\N	sequence	0	SO	synonymous_variant	synonymous_variant
SO:0001580	SO:0001819	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001819	"A sequence variant where there is no resulting change to the encoded amino acid." [SO:ke]	491468	\N	\N	sequence	1	SO	coding_sequence_variant	synonymous_variant
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001819	"A sequence variant where there is no resulting change to the encoded amino acid." [SO:ke]	1074090	\N	\N	sequence	2	SO	exon_variant	synonymous_variant
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001819	"A sequence variant where there is no resulting change to the encoded amino acid." [SO:ke]	1074091	\N	\N	sequence	2	SO	coding_transcript_variant	synonymous_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001819	"A sequence variant where there is no resulting change to the encoded amino acid." [SO:ke]	1905217	\N	\N	sequence	3	SO	transcript_variant	synonymous_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001819	"A sequence variant where there is no resulting change to the encoded amino acid." [SO:ke]	1905218	\N	\N	sequence	3	SO	transcript_variant	synonymous_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001819	"A sequence variant where there is no resulting change to the encoded amino acid." [SO:ke]	2929638	\N	\N	sequence	4	SO	gene_variant	synonymous_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001819	"A sequence variant where there is no resulting change to the encoded amino acid." [SO:ke]	4002718	\N	\N	sequence	5	SO	feature_variant	synonymous_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001819	"A sequence variant where there is no resulting change to the encoded amino acid." [SO:ke]	4966953	\N	\N	sequence	6	SO	structural_variant	synonymous_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001819	"A sequence variant where there is no resulting change to the encoded amino acid." [SO:ke]	5741526	\N	\N	sequence	7	SO	sequence_variant	synonymous_variant
SO:0001820	\N	\N	"A coding sequence variant where the change does not alter the frame of the transcript." [SO:ke]	SO:0001820	"A coding sequence variant where the change does not alter the frame of the transcript." [SO:ke]	46684	\N	\N	sequence	0	SO	inframe_indel	inframe_indel
SO:0001650	SO:0001820	\N	"A sequence variant which does not cause a disruption of the translational reading frame." [SO:ke]	SO:0001820	"A coding sequence variant where the change does not alter the frame of the transcript." [SO:ke]	491469	\N	\N	sequence	1	SO	inframe_variant	inframe_indel
SO:0001818	SO:0001650	\N	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	SO:0001820	"A coding sequence variant where the change does not alter the frame of the transcript." [SO:ke]	1074092	\N	\N	sequence	2	SO	protein_altering_variant	inframe_indel
SO:0001580	SO:0001818	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001820	"A coding sequence variant where the change does not alter the frame of the transcript." [SO:ke]	1905219	\N	\N	sequence	3	SO	coding_sequence_variant	inframe_indel
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001820	"A coding sequence variant where the change does not alter the frame of the transcript." [SO:ke]	2929639	\N	\N	sequence	4	SO	exon_variant	inframe_indel
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001820	"A coding sequence variant where the change does not alter the frame of the transcript." [SO:ke]	2929640	\N	\N	sequence	4	SO	coding_transcript_variant	inframe_indel
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001820	"A coding sequence variant where the change does not alter the frame of the transcript." [SO:ke]	4002719	\N	\N	sequence	5	SO	transcript_variant	inframe_indel
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001820	"A coding sequence variant where the change does not alter the frame of the transcript." [SO:ke]	4002720	\N	\N	sequence	5	SO	transcript_variant	inframe_indel
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001820	"A coding sequence variant where the change does not alter the frame of the transcript." [SO:ke]	4966954	\N	\N	sequence	6	SO	gene_variant	inframe_indel
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001820	"A coding sequence variant where the change does not alter the frame of the transcript." [SO:ke]	5741527	\N	\N	sequence	7	SO	feature_variant	inframe_indel
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001820	"A coding sequence variant where the change does not alter the frame of the transcript." [SO:ke]	6311240	\N	\N	sequence	8	SO	structural_variant	inframe_indel
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001820	"A coding sequence variant where the change does not alter the frame of the transcript." [SO:ke]	6699485	\N	\N	sequence	9	SO	sequence_variant	inframe_indel
SO:0001821	\N	\N	"An inframe non synonymous variant that inserts bases into in the coding sequence." [EBI:gr]	SO:0001821	"An inframe non synonymous variant that inserts bases into in the coding sequence." [EBI:gr]	46685	\N	\N	sequence	0	SO	inframe_insertion	inframe_insertion
SO:0001820	SO:0001821	\N	"A coding sequence variant where the change does not alter the frame of the transcript." [SO:ke]	SO:0001821	"An inframe non synonymous variant that inserts bases into in the coding sequence." [EBI:gr]	491470	\N	\N	sequence	1	SO	inframe_indel	inframe_insertion
SO:0001908	SO:0001821	\N	"A sequence variant that causes the extension of a genomic feature from within the feature rather than from the terminus of the feature, with regard to the reference sequence." [SO:ke]	SO:0001821	"An inframe non synonymous variant that inserts bases into in the coding sequence." [EBI:gr]	491471	\N	\N	sequence	1	SO	internal_feature_elongation	inframe_insertion
SO:0001650	SO:0001820	\N	"A sequence variant which does not cause a disruption of the translational reading frame." [SO:ke]	SO:0001821	"An inframe non synonymous variant that inserts bases into in the coding sequence." [EBI:gr]	1074093	\N	\N	sequence	2	SO	inframe_variant	inframe_insertion
SO:0001907	SO:0001908	\N	"A sequence variant that causes the extension of a genomic feature, with regard to the reference sequence." [SO:ke]	SO:0001821	"An inframe non synonymous variant that inserts bases into in the coding sequence." [EBI:gr]	1074094	\N	\N	sequence	2	SO	feature_elongation	inframe_insertion
SO:0001818	SO:0001650	\N	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	SO:0001821	"An inframe non synonymous variant that inserts bases into in the coding sequence." [EBI:gr]	1905220	\N	\N	sequence	3	SO	protein_altering_variant	inframe_insertion
SO:0001878	SO:0001907	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001821	"An inframe non synonymous variant that inserts bases into in the coding sequence." [EBI:gr]	1905221	\N	\N	sequence	3	SO	feature_variant	inframe_insertion
SO:0001580	SO:0001818	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001821	"An inframe non synonymous variant that inserts bases into in the coding sequence." [EBI:gr]	2929641	\N	\N	sequence	4	SO	coding_sequence_variant	inframe_insertion
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001821	"An inframe non synonymous variant that inserts bases into in the coding sequence." [EBI:gr]	6699486	\N	\N	sequence	9	SO	structural_variant	inframe_insertion
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001821	"An inframe non synonymous variant that inserts bases into in the coding sequence." [EBI:gr]	4002721	\N	\N	sequence	5	SO	exon_variant	inframe_insertion
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001821	"An inframe non synonymous variant that inserts bases into in the coding sequence." [EBI:gr]	4002722	\N	\N	sequence	5	SO	coding_transcript_variant	inframe_insertion
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001821	"An inframe non synonymous variant that inserts bases into in the coding sequence." [EBI:gr]	6778568	\N	\N	sequence	10	SO	sequence_variant	inframe_insertion
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001821	"An inframe non synonymous variant that inserts bases into in the coding sequence." [EBI:gr]	4966955	\N	\N	sequence	6	SO	transcript_variant	inframe_insertion
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001821	"An inframe non synonymous variant that inserts bases into in the coding sequence." [EBI:gr]	4966956	\N	\N	sequence	6	SO	transcript_variant	inframe_insertion
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001821	"An inframe non synonymous variant that inserts bases into in the coding sequence." [EBI:gr]	5741528	\N	\N	sequence	7	SO	gene_variant	inframe_insertion
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001821	"An inframe non synonymous variant that inserts bases into in the coding sequence." [EBI:gr]	6311241	\N	\N	sequence	8	SO	feature_variant	inframe_insertion
SO:0001822	\N	\N	"An inframe non synonymous variant that deletes bases from the coding sequence." [EBI:gr]	SO:0001822	"An inframe non synonymous variant that deletes bases from the coding sequence." [EBI:gr]	46686	\N	\N	sequence	0	SO	inframe_deletion	inframe_deletion
SO:0001820	SO:0001822	\N	"A coding sequence variant where the change does not alter the frame of the transcript." [SO:ke]	SO:0001822	"An inframe non synonymous variant that deletes bases from the coding sequence." [EBI:gr]	491472	\N	\N	sequence	1	SO	inframe_indel	inframe_deletion
SO:0001906	SO:0001822	\N	"A sequence variant that causes the reduction of a genomic feature, with regard to the reference sequence." [SO:ke]	SO:0001822	"An inframe non synonymous variant that deletes bases from the coding sequence." [EBI:gr]	491473	\N	\N	sequence	1	SO	feature_truncation	inframe_deletion
SO:0001650	SO:0001820	\N	"A sequence variant which does not cause a disruption of the translational reading frame." [SO:ke]	SO:0001822	"An inframe non synonymous variant that deletes bases from the coding sequence." [EBI:gr]	1074095	\N	\N	sequence	2	SO	inframe_variant	inframe_deletion
SO:0001878	SO:0001906	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001822	"An inframe non synonymous variant that deletes bases from the coding sequence." [EBI:gr]	1074096	\N	\N	sequence	2	SO	feature_variant	inframe_deletion
SO:0001818	SO:0001650	\N	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	SO:0001822	"An inframe non synonymous variant that deletes bases from the coding sequence." [EBI:gr]	1905222	\N	\N	sequence	3	SO	protein_altering_variant	inframe_deletion
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001822	"An inframe non synonymous variant that deletes bases from the coding sequence." [EBI:gr]	6699487	\N	\N	sequence	9	SO	structural_variant	inframe_deletion
SO:0001580	SO:0001818	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001822	"An inframe non synonymous variant that deletes bases from the coding sequence." [EBI:gr]	2929643	\N	\N	sequence	4	SO	coding_sequence_variant	inframe_deletion
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001822	"An inframe non synonymous variant that deletes bases from the coding sequence." [EBI:gr]	6762342	\N	\N	sequence	10	SO	sequence_variant	inframe_deletion
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001822	"An inframe non synonymous variant that deletes bases from the coding sequence." [EBI:gr]	4002724	\N	\N	sequence	5	SO	exon_variant	inframe_deletion
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001822	"An inframe non synonymous variant that deletes bases from the coding sequence." [EBI:gr]	4002725	\N	\N	sequence	5	SO	coding_transcript_variant	inframe_deletion
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001822	"An inframe non synonymous variant that deletes bases from the coding sequence." [EBI:gr]	4966957	\N	\N	sequence	6	SO	transcript_variant	inframe_deletion
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001822	"An inframe non synonymous variant that deletes bases from the coding sequence." [EBI:gr]	4966958	\N	\N	sequence	6	SO	transcript_variant	inframe_deletion
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001822	"An inframe non synonymous variant that deletes bases from the coding sequence." [EBI:gr]	5741529	\N	\N	sequence	7	SO	gene_variant	inframe_deletion
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001822	"An inframe non synonymous variant that deletes bases from the coding sequence." [EBI:gr]	6311242	\N	\N	sequence	8	SO	feature_variant	inframe_deletion
SO:0001823	\N	\N	"An inframe increase in cds length that inserts one or more codons into the coding sequence between existing codons." [EBI:gr]	SO:0001823	"An inframe increase in cds length that inserts one or more codons into the coding sequence between existing codons." [EBI:gr]	46687	\N	\N	sequence	0	SO	conservative_inframe_insertion	conservative_inframe_insertion
SO:0001821	SO:0001823	\N	"An inframe non synonymous variant that inserts bases into in the coding sequence." [EBI:gr]	SO:0001823	"An inframe increase in cds length that inserts one or more codons into the coding sequence between existing codons." [EBI:gr]	491474	\N	\N	sequence	1	SO	inframe_insertion	conservative_inframe_insertion
SO:0001820	SO:0001821	\N	"A coding sequence variant where the change does not alter the frame of the transcript." [SO:ke]	SO:0001823	"An inframe increase in cds length that inserts one or more codons into the coding sequence between existing codons." [EBI:gr]	1074097	\N	\N	sequence	2	SO	inframe_indel	conservative_inframe_insertion
SO:0001908	SO:0001821	\N	"A sequence variant that causes the extension of a genomic feature from within the feature rather than from the terminus of the feature, with regard to the reference sequence." [SO:ke]	SO:0001823	"An inframe increase in cds length that inserts one or more codons into the coding sequence between existing codons." [EBI:gr]	1074098	\N	\N	sequence	2	SO	internal_feature_elongation	conservative_inframe_insertion
SO:0001650	SO:0001820	\N	"A sequence variant which does not cause a disruption of the translational reading frame." [SO:ke]	SO:0001823	"An inframe increase in cds length that inserts one or more codons into the coding sequence between existing codons." [EBI:gr]	1905224	\N	\N	sequence	3	SO	inframe_variant	conservative_inframe_insertion
SO:0001907	SO:0001908	\N	"A sequence variant that causes the extension of a genomic feature, with regard to the reference sequence." [SO:ke]	SO:0001823	"An inframe increase in cds length that inserts one or more codons into the coding sequence between existing codons." [EBI:gr]	1905225	\N	\N	sequence	3	SO	feature_elongation	conservative_inframe_insertion
SO:0001818	SO:0001650	\N	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	SO:0001823	"An inframe increase in cds length that inserts one or more codons into the coding sequence between existing codons." [EBI:gr]	2929645	\N	\N	sequence	4	SO	protein_altering_variant	conservative_inframe_insertion
SO:0001878	SO:0001907	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001823	"An inframe increase in cds length that inserts one or more codons into the coding sequence between existing codons." [EBI:gr]	2929646	\N	\N	sequence	4	SO	feature_variant	conservative_inframe_insertion
SO:0001580	SO:0001818	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001823	"An inframe increase in cds length that inserts one or more codons into the coding sequence between existing codons." [EBI:gr]	4002726	\N	\N	sequence	5	SO	coding_sequence_variant	conservative_inframe_insertion
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001823	"An inframe increase in cds length that inserts one or more codons into the coding sequence between existing codons." [EBI:gr]	6948167	\N	\N	sequence	10	SO	structural_variant	conservative_inframe_insertion
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001823	"An inframe increase in cds length that inserts one or more codons into the coding sequence between existing codons." [EBI:gr]	4966959	\N	\N	sequence	6	SO	exon_variant	conservative_inframe_insertion
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001823	"An inframe increase in cds length that inserts one or more codons into the coding sequence between existing codons." [EBI:gr]	4966960	\N	\N	sequence	6	SO	coding_transcript_variant	conservative_inframe_insertion
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001823	"An inframe increase in cds length that inserts one or more codons into the coding sequence between existing codons." [EBI:gr]	7029791	\N	\N	sequence	11	SO	sequence_variant	conservative_inframe_insertion
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001823	"An inframe increase in cds length that inserts one or more codons into the coding sequence between existing codons." [EBI:gr]	5741530	\N	\N	sequence	7	SO	transcript_variant	conservative_inframe_insertion
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001823	"An inframe increase in cds length that inserts one or more codons into the coding sequence between existing codons." [EBI:gr]	5741531	\N	\N	sequence	7	SO	transcript_variant	conservative_inframe_insertion
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001823	"An inframe increase in cds length that inserts one or more codons into the coding sequence between existing codons." [EBI:gr]	6311243	\N	\N	sequence	8	SO	gene_variant	conservative_inframe_insertion
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001823	"An inframe increase in cds length that inserts one or more codons into the coding sequence between existing codons." [EBI:gr]	6699488	\N	\N	sequence	9	SO	feature_variant	conservative_inframe_insertion
SO:0001824	\N	\N	"An inframe increase in cds length that inserts one or more codons into the coding sequence within an existing codon." [EBI:gr]	SO:0001824	"An inframe increase in cds length that inserts one or more codons into the coding sequence within an existing codon." [EBI:gr]	46688	\N	\N	sequence	0	SO	disruptive_inframe_insertion	disruptive_inframe_insertion
SO:0001821	SO:0001824	\N	"An inframe non synonymous variant that inserts bases into in the coding sequence." [EBI:gr]	SO:0001824	"An inframe increase in cds length that inserts one or more codons into the coding sequence within an existing codon." [EBI:gr]	491475	\N	\N	sequence	1	SO	inframe_insertion	disruptive_inframe_insertion
SO:0001820	SO:0001821	\N	"A coding sequence variant where the change does not alter the frame of the transcript." [SO:ke]	SO:0001824	"An inframe increase in cds length that inserts one or more codons into the coding sequence within an existing codon." [EBI:gr]	1074099	\N	\N	sequence	2	SO	inframe_indel	disruptive_inframe_insertion
SO:0001908	SO:0001821	\N	"A sequence variant that causes the extension of a genomic feature from within the feature rather than from the terminus of the feature, with regard to the reference sequence." [SO:ke]	SO:0001824	"An inframe increase in cds length that inserts one or more codons into the coding sequence within an existing codon." [EBI:gr]	1074100	\N	\N	sequence	2	SO	internal_feature_elongation	disruptive_inframe_insertion
SO:0001650	SO:0001820	\N	"A sequence variant which does not cause a disruption of the translational reading frame." [SO:ke]	SO:0001824	"An inframe increase in cds length that inserts one or more codons into the coding sequence within an existing codon." [EBI:gr]	1905226	\N	\N	sequence	3	SO	inframe_variant	disruptive_inframe_insertion
SO:0001907	SO:0001908	\N	"A sequence variant that causes the extension of a genomic feature, with regard to the reference sequence." [SO:ke]	SO:0001824	"An inframe increase in cds length that inserts one or more codons into the coding sequence within an existing codon." [EBI:gr]	1905227	\N	\N	sequence	3	SO	feature_elongation	disruptive_inframe_insertion
SO:0001818	SO:0001650	\N	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	SO:0001824	"An inframe increase in cds length that inserts one or more codons into the coding sequence within an existing codon." [EBI:gr]	2929647	\N	\N	sequence	4	SO	protein_altering_variant	disruptive_inframe_insertion
SO:0001878	SO:0001907	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001824	"An inframe increase in cds length that inserts one or more codons into the coding sequence within an existing codon." [EBI:gr]	2929648	\N	\N	sequence	4	SO	feature_variant	disruptive_inframe_insertion
SO:0001580	SO:0001818	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001824	"An inframe increase in cds length that inserts one or more codons into the coding sequence within an existing codon." [EBI:gr]	4002728	\N	\N	sequence	5	SO	coding_sequence_variant	disruptive_inframe_insertion
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001824	"An inframe increase in cds length that inserts one or more codons into the coding sequence within an existing codon." [EBI:gr]	6948168	\N	\N	sequence	10	SO	structural_variant	disruptive_inframe_insertion
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001824	"An inframe increase in cds length that inserts one or more codons into the coding sequence within an existing codon." [EBI:gr]	4966962	\N	\N	sequence	6	SO	exon_variant	disruptive_inframe_insertion
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001824	"An inframe increase in cds length that inserts one or more codons into the coding sequence within an existing codon." [EBI:gr]	4966963	\N	\N	sequence	6	SO	coding_transcript_variant	disruptive_inframe_insertion
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001824	"An inframe increase in cds length that inserts one or more codons into the coding sequence within an existing codon." [EBI:gr]	7029792	\N	\N	sequence	11	SO	sequence_variant	disruptive_inframe_insertion
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001824	"An inframe increase in cds length that inserts one or more codons into the coding sequence within an existing codon." [EBI:gr]	5741532	\N	\N	sequence	7	SO	transcript_variant	disruptive_inframe_insertion
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001824	"An inframe increase in cds length that inserts one or more codons into the coding sequence within an existing codon." [EBI:gr]	5741533	\N	\N	sequence	7	SO	transcript_variant	disruptive_inframe_insertion
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001824	"An inframe increase in cds length that inserts one or more codons into the coding sequence within an existing codon." [EBI:gr]	6311244	\N	\N	sequence	8	SO	gene_variant	disruptive_inframe_insertion
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001824	"An inframe increase in cds length that inserts one or more codons into the coding sequence within an existing codon." [EBI:gr]	6699489	\N	\N	sequence	9	SO	feature_variant	disruptive_inframe_insertion
SO:0001825	\N	\N	"An inframe decrease in cds length that deletes one or more entire codons from the coding sequence but does not change any remaining codons." [EBI:gr]	SO:0001825	"An inframe decrease in cds length that deletes one or more entire codons from the coding sequence but does not change any remaining codons." [EBI:gr]	46689	\N	\N	sequence	0	SO	conservative_inframe_deletion	conservative_inframe_deletion
SO:0001822	SO:0001825	\N	"An inframe non synonymous variant that deletes bases from the coding sequence." [EBI:gr]	SO:0001825	"An inframe decrease in cds length that deletes one or more entire codons from the coding sequence but does not change any remaining codons." [EBI:gr]	491476	\N	\N	sequence	1	SO	inframe_deletion	conservative_inframe_deletion
SO:0001820	SO:0001822	\N	"A coding sequence variant where the change does not alter the frame of the transcript." [SO:ke]	SO:0001825	"An inframe decrease in cds length that deletes one or more entire codons from the coding sequence but does not change any remaining codons." [EBI:gr]	1074101	\N	\N	sequence	2	SO	inframe_indel	conservative_inframe_deletion
SO:0001906	SO:0001822	\N	"A sequence variant that causes the reduction of a genomic feature, with regard to the reference sequence." [SO:ke]	SO:0001825	"An inframe decrease in cds length that deletes one or more entire codons from the coding sequence but does not change any remaining codons." [EBI:gr]	1074102	\N	\N	sequence	2	SO	feature_truncation	conservative_inframe_deletion
SO:0001650	SO:0001820	\N	"A sequence variant which does not cause a disruption of the translational reading frame." [SO:ke]	SO:0001825	"An inframe decrease in cds length that deletes one or more entire codons from the coding sequence but does not change any remaining codons." [EBI:gr]	1905228	\N	\N	sequence	3	SO	inframe_variant	conservative_inframe_deletion
SO:0001878	SO:0001906	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001825	"An inframe decrease in cds length that deletes one or more entire codons from the coding sequence but does not change any remaining codons." [EBI:gr]	1905229	\N	\N	sequence	3	SO	feature_variant	conservative_inframe_deletion
SO:0001818	SO:0001650	\N	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	SO:0001825	"An inframe decrease in cds length that deletes one or more entire codons from the coding sequence but does not change any remaining codons." [EBI:gr]	2929649	\N	\N	sequence	4	SO	protein_altering_variant	conservative_inframe_deletion
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001825	"An inframe decrease in cds length that deletes one or more entire codons from the coding sequence but does not change any remaining codons." [EBI:gr]	6948169	\N	\N	sequence	10	SO	structural_variant	conservative_inframe_deletion
SO:0001580	SO:0001818	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001825	"An inframe decrease in cds length that deletes one or more entire codons from the coding sequence but does not change any remaining codons." [EBI:gr]	4002730	\N	\N	sequence	5	SO	coding_sequence_variant	conservative_inframe_deletion
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001825	"An inframe decrease in cds length that deletes one or more entire codons from the coding sequence but does not change any remaining codons." [EBI:gr]	7015659	\N	\N	sequence	11	SO	sequence_variant	conservative_inframe_deletion
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001825	"An inframe decrease in cds length that deletes one or more entire codons from the coding sequence but does not change any remaining codons." [EBI:gr]	4966965	\N	\N	sequence	6	SO	exon_variant	conservative_inframe_deletion
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001825	"An inframe decrease in cds length that deletes one or more entire codons from the coding sequence but does not change any remaining codons." [EBI:gr]	4966966	\N	\N	sequence	6	SO	coding_transcript_variant	conservative_inframe_deletion
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001825	"An inframe decrease in cds length that deletes one or more entire codons from the coding sequence but does not change any remaining codons." [EBI:gr]	5741534	\N	\N	sequence	7	SO	transcript_variant	conservative_inframe_deletion
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001825	"An inframe decrease in cds length that deletes one or more entire codons from the coding sequence but does not change any remaining codons." [EBI:gr]	5741535	\N	\N	sequence	7	SO	transcript_variant	conservative_inframe_deletion
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001825	"An inframe decrease in cds length that deletes one or more entire codons from the coding sequence but does not change any remaining codons." [EBI:gr]	6311245	\N	\N	sequence	8	SO	gene_variant	conservative_inframe_deletion
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001825	"An inframe decrease in cds length that deletes one or more entire codons from the coding sequence but does not change any remaining codons." [EBI:gr]	6699490	\N	\N	sequence	9	SO	feature_variant	conservative_inframe_deletion
SO:0001826	\N	\N	"An inframe decrease in cds length that deletes bases from the coding sequence starting within an existing codon." [EBI:gr]	SO:0001826	"An inframe decrease in cds length that deletes bases from the coding sequence starting within an existing codon." [EBI:gr]	46690	\N	\N	sequence	0	SO	disruptive_inframe_deletion	disruptive_inframe_deletion
SO:0001822	SO:0001826	\N	"An inframe non synonymous variant that deletes bases from the coding sequence." [EBI:gr]	SO:0001826	"An inframe decrease in cds length that deletes bases from the coding sequence starting within an existing codon." [EBI:gr]	491477	\N	\N	sequence	1	SO	inframe_deletion	disruptive_inframe_deletion
SO:0001820	SO:0001822	\N	"A coding sequence variant where the change does not alter the frame of the transcript." [SO:ke]	SO:0001826	"An inframe decrease in cds length that deletes bases from the coding sequence starting within an existing codon." [EBI:gr]	1074103	\N	\N	sequence	2	SO	inframe_indel	disruptive_inframe_deletion
SO:0001906	SO:0001822	\N	"A sequence variant that causes the reduction of a genomic feature, with regard to the reference sequence." [SO:ke]	SO:0001826	"An inframe decrease in cds length that deletes bases from the coding sequence starting within an existing codon." [EBI:gr]	1074104	\N	\N	sequence	2	SO	feature_truncation	disruptive_inframe_deletion
SO:0001650	SO:0001820	\N	"A sequence variant which does not cause a disruption of the translational reading frame." [SO:ke]	SO:0001826	"An inframe decrease in cds length that deletes bases from the coding sequence starting within an existing codon." [EBI:gr]	1905230	\N	\N	sequence	3	SO	inframe_variant	disruptive_inframe_deletion
SO:0001878	SO:0001906	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001826	"An inframe decrease in cds length that deletes bases from the coding sequence starting within an existing codon." [EBI:gr]	1905231	\N	\N	sequence	3	SO	feature_variant	disruptive_inframe_deletion
SO:0001818	SO:0001650	\N	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	SO:0001826	"An inframe decrease in cds length that deletes bases from the coding sequence starting within an existing codon." [EBI:gr]	2929651	\N	\N	sequence	4	SO	protein_altering_variant	disruptive_inframe_deletion
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001826	"An inframe decrease in cds length that deletes bases from the coding sequence starting within an existing codon." [EBI:gr]	6948170	\N	\N	sequence	10	SO	structural_variant	disruptive_inframe_deletion
SO:0001580	SO:0001818	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001826	"An inframe decrease in cds length that deletes bases from the coding sequence starting within an existing codon." [EBI:gr]	4002732	\N	\N	sequence	5	SO	coding_sequence_variant	disruptive_inframe_deletion
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001826	"An inframe decrease in cds length that deletes bases from the coding sequence starting within an existing codon." [EBI:gr]	7015660	\N	\N	sequence	11	SO	sequence_variant	disruptive_inframe_deletion
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001826	"An inframe decrease in cds length that deletes bases from the coding sequence starting within an existing codon." [EBI:gr]	4966967	\N	\N	sequence	6	SO	exon_variant	disruptive_inframe_deletion
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001826	"An inframe decrease in cds length that deletes bases from the coding sequence starting within an existing codon." [EBI:gr]	4966968	\N	\N	sequence	6	SO	coding_transcript_variant	disruptive_inframe_deletion
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001826	"An inframe decrease in cds length that deletes bases from the coding sequence starting within an existing codon." [EBI:gr]	5741536	\N	\N	sequence	7	SO	transcript_variant	disruptive_inframe_deletion
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001826	"An inframe decrease in cds length that deletes bases from the coding sequence starting within an existing codon." [EBI:gr]	5741537	\N	\N	sequence	7	SO	transcript_variant	disruptive_inframe_deletion
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001826	"An inframe decrease in cds length that deletes bases from the coding sequence starting within an existing codon." [EBI:gr]	6311246	\N	\N	sequence	8	SO	gene_variant	disruptive_inframe_deletion
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001826	"An inframe decrease in cds length that deletes bases from the coding sequence starting within an existing codon." [EBI:gr]	6699491	\N	\N	sequence	9	SO	feature_variant	disruptive_inframe_deletion
SO:0001827	\N	\N	"A sequencer read of an mRNA substrate." [SO:ke]	SO:0001827	"A sequencer read of an mRNA substrate." [SO:ke]	46691	\N	\N	sequence	0	SO	mRNA_read	mRNA_read
SO:0000150	SO:0001827	\N	"A sequence obtained from a single sequencing experiment. Typically a read is produced when a base calling program interprets information from a chromatogram trace file produced from a sequencing machine." [SO:rd]	SO:0001827	"A sequencer read of an mRNA substrate." [SO:ke]	491478	\N	SOFA	sequence	1	SO	read	mRNA_read
SO:0000143	SO:0000150	\N	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0001827	"A sequencer read of an mRNA substrate." [SO:ke]	1074105	SOFA	SOFA	sequence	2	SO	assembly_component	mRNA_read
SO:0000149	SO:0000150	\N	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	SO:0001827	"A sequencer read of an mRNA substrate." [SO:ke]	1074106	SOFA	SOFA	sequence	2	SO	contig	mRNA_read
SO:0001410	SO:0000143	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001827	"A sequencer read of an mRNA substrate." [SO:ke]	2929654	SOFA	SOFA	sequence	4	SO	experimental_feature	mRNA_read
SO:0000143	SO:0000149	\N	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0001827	"A sequencer read of an mRNA substrate." [SO:ke]	1905233	SOFA	SOFA	sequence	3	SO	assembly_component	mRNA_read
SO:0000148	SO:0000149	\N	"One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's." [SO:ls]	SO:0001827	"A sequencer read of an mRNA substrate." [SO:ke]	1905234	SOFA	SOFA	sequence	3	SO	supercontig	mRNA_read
SO:0000353	SO:0000149	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001827	"A sequencer read of an mRNA substrate." [SO:ke]	1905235	SOFA	SOFA	sequence	3	SO	sequence_assembly	mRNA_read
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001827	"A sequencer read of an mRNA substrate." [SO:ke]	6469774	SOFA	SOFA	sequence	9	SO	region	mRNA_read
SO:0000719	SO:0000148	\N	"An ordered and oriented set of scaffolds based on somewhat weaker sets of inferential evidence such as one set of mate pair reads together with supporting evidence from ESTs or location of markers from SNP or microsatellite maps, or cytogenetic localization of contained markers." [FB:WG]	SO:0001827	"A sequencer read of an mRNA substrate." [SO:ke]	2929655	SOFA	SOFA	sequence	4	SO	ultracontig	mRNA_read
SO:0001876	SO:0000148	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001827	"A sequencer read of an mRNA substrate." [SO:ke]	2929656	SOFA	\N	sequence	4	SO	partial_genomic_sequence_assembly	mRNA_read
SO:0001248	SO:0000353	\N	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0001827	"A sequencer read of an mRNA substrate." [SO:ke]	5407488	SOFA	SOFA	sequence	7	SO	assembly	mRNA_read
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001827	"A sequencer read of an mRNA substrate." [SO:ke]	6778569	SOFA	SOFA	sequence	10	SO	sequence_feature	mRNA_read
SO:0001876	SO:0000719	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001827	"A sequencer read of an mRNA substrate." [SO:ke]	4002735	SOFA	\N	sequence	5	SO	partial_genomic_sequence_assembly	mRNA_read
SO:0000353	SO:0001876	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001827	"A sequencer read of an mRNA substrate." [SO:ke]	4966969	\N	SOFA	sequence	6	SO	sequence_assembly	mRNA_read
SO:0001410	SO:0001248	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001827	"A sequencer read of an mRNA substrate." [SO:ke]	5876459	SOFA	SOFA	sequence	8	SO	experimental_feature	mRNA_read
SO:0001828	\N	\N	"A sequencer read of a genomic DNA substrate." [SO:ke]	SO:0001828	"A sequencer read of a genomic DNA substrate." [SO:ke]	46692	\N	\N	sequence	0	SO	genomic_DNA_read	genomic_DNA_read
SO:0000150	SO:0001828	\N	"A sequence obtained from a single sequencing experiment. Typically a read is produced when a base calling program interprets information from a chromatogram trace file produced from a sequencing machine." [SO:rd]	SO:0001828	"A sequencer read of a genomic DNA substrate." [SO:ke]	491479	\N	SOFA	sequence	1	SO	read	genomic_DNA_read
SO:0000143	SO:0000150	\N	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0001828	"A sequencer read of a genomic DNA substrate." [SO:ke]	1074107	SOFA	SOFA	sequence	2	SO	assembly_component	genomic_DNA_read
SO:0000149	SO:0000150	\N	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	SO:0001828	"A sequencer read of a genomic DNA substrate." [SO:ke]	1074108	SOFA	SOFA	sequence	2	SO	contig	genomic_DNA_read
SO:0001410	SO:0000143	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001828	"A sequencer read of a genomic DNA substrate." [SO:ke]	2929659	SOFA	SOFA	sequence	4	SO	experimental_feature	genomic_DNA_read
SO:0000143	SO:0000149	\N	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0001828	"A sequencer read of a genomic DNA substrate." [SO:ke]	1905237	SOFA	SOFA	sequence	3	SO	assembly_component	genomic_DNA_read
SO:0000148	SO:0000149	\N	"One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's." [SO:ls]	SO:0001828	"A sequencer read of a genomic DNA substrate." [SO:ke]	1905238	SOFA	SOFA	sequence	3	SO	supercontig	genomic_DNA_read
SO:0000353	SO:0000149	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001828	"A sequencer read of a genomic DNA substrate." [SO:ke]	1905239	SOFA	SOFA	sequence	3	SO	sequence_assembly	genomic_DNA_read
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001828	"A sequencer read of a genomic DNA substrate." [SO:ke]	6469775	SOFA	SOFA	sequence	9	SO	region	genomic_DNA_read
SO:0000719	SO:0000148	\N	"An ordered and oriented set of scaffolds based on somewhat weaker sets of inferential evidence such as one set of mate pair reads together with supporting evidence from ESTs or location of markers from SNP or microsatellite maps, or cytogenetic localization of contained markers." [FB:WG]	SO:0001828	"A sequencer read of a genomic DNA substrate." [SO:ke]	2929660	SOFA	SOFA	sequence	4	SO	ultracontig	genomic_DNA_read
SO:0001876	SO:0000148	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001828	"A sequencer read of a genomic DNA substrate." [SO:ke]	2929661	SOFA	\N	sequence	4	SO	partial_genomic_sequence_assembly	genomic_DNA_read
SO:0001248	SO:0000353	\N	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0001828	"A sequencer read of a genomic DNA substrate." [SO:ke]	5407489	SOFA	SOFA	sequence	7	SO	assembly	genomic_DNA_read
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001828	"A sequencer read of a genomic DNA substrate." [SO:ke]	6778570	SOFA	SOFA	sequence	10	SO	sequence_feature	genomic_DNA_read
SO:0001876	SO:0000719	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001828	"A sequencer read of a genomic DNA substrate." [SO:ke]	4002739	SOFA	\N	sequence	5	SO	partial_genomic_sequence_assembly	genomic_DNA_read
SO:0000353	SO:0001876	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001828	"A sequencer read of a genomic DNA substrate." [SO:ke]	4966972	\N	SOFA	sequence	6	SO	sequence_assembly	genomic_DNA_read
SO:0001410	SO:0001248	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001828	"A sequencer read of a genomic DNA substrate." [SO:ke]	5876460	SOFA	SOFA	sequence	8	SO	experimental_feature	genomic_DNA_read
SO:0001829	\N	\N	"A contig composed of mRNA_reads." [SO:ke]	SO:0001829	"A contig composed of mRNA_reads." [SO:ke]	46693	\N	\N	sequence	0	SO	mRNA_contig	mRNA_contig
SO:0000149	SO:0001829	\N	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	SO:0001829	"A contig composed of mRNA_reads." [SO:ke]	491480	\N	SOFA	sequence	1	SO	contig	mRNA_contig
SO:0000143	SO:0000149	\N	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0001829	"A contig composed of mRNA_reads." [SO:ke]	1074109	SOFA	SOFA	sequence	2	SO	assembly_component	mRNA_contig
SO:0000148	SO:0000149	\N	"One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's." [SO:ls]	SO:0001829	"A contig composed of mRNA_reads." [SO:ke]	1074110	SOFA	SOFA	sequence	2	SO	supercontig	mRNA_contig
SO:0000353	SO:0000149	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001829	"A contig composed of mRNA_reads." [SO:ke]	1074111	SOFA	SOFA	sequence	2	SO	sequence_assembly	mRNA_contig
SO:0001410	SO:0000143	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001829	"A contig composed of mRNA_reads." [SO:ke]	1905240	SOFA	SOFA	sequence	3	SO	experimental_feature	mRNA_contig
SO:0000719	SO:0000148	\N	"An ordered and oriented set of scaffolds based on somewhat weaker sets of inferential evidence such as one set of mate pair reads together with supporting evidence from ESTs or location of markers from SNP or microsatellite maps, or cytogenetic localization of contained markers." [FB:WG]	SO:0001829	"A contig composed of mRNA_reads." [SO:ke]	1905241	SOFA	SOFA	sequence	3	SO	ultracontig	mRNA_contig
SO:0001876	SO:0000148	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001829	"A contig composed of mRNA_reads." [SO:ke]	1905242	SOFA	\N	sequence	3	SO	partial_genomic_sequence_assembly	mRNA_contig
SO:0001248	SO:0000353	\N	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0001829	"A contig composed of mRNA_reads." [SO:ke]	4385868	SOFA	SOFA	sequence	6	SO	assembly	mRNA_contig
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001829	"A contig composed of mRNA_reads." [SO:ke]	5876462	SOFA	SOFA	sequence	8	SO	region	mRNA_contig
SO:0001876	SO:0000719	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001829	"A contig composed of mRNA_reads." [SO:ke]	2929664	SOFA	\N	sequence	4	SO	partial_genomic_sequence_assembly	mRNA_contig
SO:0000353	SO:0001876	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001829	"A contig composed of mRNA_reads." [SO:ke]	4002743	\N	SOFA	sequence	5	SO	sequence_assembly	mRNA_contig
SO:0001410	SO:0001248	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001829	"A contig composed of mRNA_reads." [SO:ke]	5059250	SOFA	SOFA	sequence	7	SO	experimental_feature	mRNA_contig
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001829	"A contig composed of mRNA_reads." [SO:ke]	6409720	SOFA	SOFA	sequence	9	SO	sequence_feature	mRNA_contig
SO:0001830	\N	\N	"A PCR product obtained by applying the AFLP technique, based on a restriction enzyme digestion of genomic DNA and an amplification of the resulting fragments." [GMOD:ea]	SO:0001830	"A PCR product obtained by applying the AFLP technique, based on a restriction enzyme digestion of genomic DNA and an amplification of the resulting fragments." [GMOD:ea]	46694	\N	\N	sequence	0	SO	AFLP_fragment	AFLP_fragment
SO:0000006	SO:0001830	\N	"A region amplified by a PCR reaction." [SO:ke]	SO:0001830	"A PCR product obtained by applying the AFLP technique, based on a restriction enzyme digestion of genomic DNA and an amplification of the resulting fragments." [GMOD:ea]	491481	\N	SOFA	sequence	1	SO	PCR_product	AFLP_fragment
SO:0000695	SO:0000006	\N	"A sequence used in experiment." [SO:ke]	SO:0001830	"A PCR product obtained by applying the AFLP technique, based on a restriction enzyme digestion of genomic DNA and an amplification of the resulting fragments." [GMOD:ea]	1074112	SOFA	SOFA	sequence	2	SO	reagent	AFLP_fragment
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001830	"A PCR product obtained by applying the AFLP technique, based on a restriction enzyme digestion of genomic DNA and an amplification of the resulting fragments." [GMOD:ea]	1905244	SOFA	SOFA	sequence	3	SO	biomaterial_region	AFLP_fragment
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001830	"A PCR product obtained by applying the AFLP technique, based on a restriction enzyme digestion of genomic DNA and an amplification of the resulting fragments." [GMOD:ea]	2929667	SOFA	SOFA	sequence	4	SO	region	AFLP_fragment
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001830	"A PCR product obtained by applying the AFLP technique, based on a restriction enzyme digestion of genomic DNA and an amplification of the resulting fragments." [GMOD:ea]	4002746	SOFA	SOFA	sequence	5	SO	sequence_feature	AFLP_fragment
SO:0001831	\N	\N	"A match to a protein HMM such as pfam." [SO:ke]	SO:0001831	"A match to a protein HMM such as pfam." [SO:ke]	46695	\N	\N	sequence	0	SO	protein_hmm_match	protein_hmm_match
SO:0000349	SO:0001831	\N	"A match against a protein sequence." [SO:ke]	SO:0001831	"A match to a protein HMM such as pfam." [SO:ke]	491482	\N	SOFA	sequence	1	SO	protein_match	protein_hmm_match
SO:0000343	SO:0000349	\N	"A region of sequence, aligned to another sequence with some statistical significance, using an algorithm such as BLAST or SIM4." [SO:ke]	SO:0001831	"A match to a protein HMM such as pfam." [SO:ke]	1074113	SOFA	SOFA	sequence	2	SO	match	protein_hmm_match
SO:0001410	SO:0000343	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001831	"A match to a protein HMM such as pfam." [SO:ke]	1905245	SOFA	SOFA	sequence	3	SO	experimental_feature	protein_hmm_match
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001831	"A match to a protein HMM such as pfam." [SO:ke]	2929668	SOFA	SOFA	sequence	4	SO	region	protein_hmm_match
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001831	"A match to a protein HMM such as pfam." [SO:ke]	4002747	SOFA	SOFA	sequence	5	SO	sequence_feature	protein_hmm_match
SO:0001832	\N	\N	"A region of immunoglobulin sequence, either constant or variable." [SO:ke]	SO:0001832	"A region of immunoglobulin sequence, either constant or variable." [SO:ke]	46696	\N	\N	sequence	0	SO	immunoglobulin_region	immunoglobulin_region
SO:0000839	SO:0001832	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001832	"A region of immunoglobulin sequence, either constant or variable." [SO:ke]	491483	\N	biosapiens,SOFA	sequence	1	SO	polypeptide_region	immunoglobulin_region
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001832	"A region of immunoglobulin sequence, either constant or variable." [SO:ke]	1074114	biosapiens,SOFA	SOFA	sequence	2	SO	polypeptide	immunoglobulin_region
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001832	"A region of immunoglobulin sequence, either constant or variable." [SO:ke]	1074115	biosapiens,SOFA	SOFA	sequence	2	SO	biological_region	immunoglobulin_region
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001832	"A region of immunoglobulin sequence, either constant or variable." [SO:ke]	1905246	SOFA	SOFA	sequence	3	SO	biological_region	immunoglobulin_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001832	"A region of immunoglobulin sequence, either constant or variable." [SO:ke]	2929669	SOFA	SOFA	sequence	4	SO	region	immunoglobulin_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001832	"A region of immunoglobulin sequence, either constant or variable." [SO:ke]	3174007	SOFA	SOFA	sequence	5	SO	sequence_feature	immunoglobulin_region
SO:0001833	\N	\N	"The variable region of an immunoglobulin polypeptide sequence." [SO:ke]	SO:0001833	"The variable region of an immunoglobulin polypeptide sequence." [SO:ke]	46697	\N	\N	sequence	0	SO	V_region	V_region
SO:0001832	SO:0001833	\N	"A region of immunoglobulin sequence, either constant or variable." [SO:ke]	SO:0001833	"The variable region of an immunoglobulin polypeptide sequence." [SO:ke]	491484	\N	\N	sequence	1	SO	immunoglobulin_region	V_region
SO:0000839	SO:0001832	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001833	"The variable region of an immunoglobulin polypeptide sequence." [SO:ke]	1074116	\N	biosapiens,SOFA	sequence	2	SO	polypeptide_region	V_region
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001833	"The variable region of an immunoglobulin polypeptide sequence." [SO:ke]	1905248	biosapiens,SOFA	SOFA	sequence	3	SO	polypeptide	V_region
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001833	"The variable region of an immunoglobulin polypeptide sequence." [SO:ke]	1905249	biosapiens,SOFA	SOFA	sequence	3	SO	biological_region	V_region
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001833	"The variable region of an immunoglobulin polypeptide sequence." [SO:ke]	2929671	SOFA	SOFA	sequence	4	SO	biological_region	V_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001833	"The variable region of an immunoglobulin polypeptide sequence." [SO:ke]	4002748	SOFA	SOFA	sequence	5	SO	region	V_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001833	"The variable region of an immunoglobulin polypeptide sequence." [SO:ke]	4385869	SOFA	SOFA	sequence	6	SO	sequence_feature	V_region
SO:0001834	\N	\N	"The constant region of an immunoglobulin polypeptide sequence." [SO:ke]	SO:0001834	"The constant region of an immunoglobulin polypeptide sequence." [SO:ke]	46698	\N	\N	sequence	0	SO	C_region	C_region
SO:0001832	SO:0001834	\N	"A region of immunoglobulin sequence, either constant or variable." [SO:ke]	SO:0001834	"The constant region of an immunoglobulin polypeptide sequence." [SO:ke]	491485	\N	\N	sequence	1	SO	immunoglobulin_region	C_region
SO:0000839	SO:0001832	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001834	"The constant region of an immunoglobulin polypeptide sequence." [SO:ke]	1074117	\N	biosapiens,SOFA	sequence	2	SO	polypeptide_region	C_region
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001834	"The constant region of an immunoglobulin polypeptide sequence." [SO:ke]	1905250	biosapiens,SOFA	SOFA	sequence	3	SO	polypeptide	C_region
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001834	"The constant region of an immunoglobulin polypeptide sequence." [SO:ke]	1905251	biosapiens,SOFA	SOFA	sequence	3	SO	biological_region	C_region
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001834	"The constant region of an immunoglobulin polypeptide sequence." [SO:ke]	2929673	SOFA	SOFA	sequence	4	SO	biological_region	C_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001834	"The constant region of an immunoglobulin polypeptide sequence." [SO:ke]	4002750	SOFA	SOFA	sequence	5	SO	region	C_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001834	"The constant region of an immunoglobulin polypeptide sequence." [SO:ke]	4385870	SOFA	SOFA	sequence	6	SO	sequence_feature	C_region
SO:0001835	\N	\N	"Extra nucleotides inserted between rearranged immunoglobulin segments." [SO:ke]	SO:0001835	"Extra nucleotides inserted between rearranged immunoglobulin segments." [SO:ke]	46699	\N	\N	sequence	0	SO	N_region	N_region
SO:0000301	SO:0001835	\N	"" []	SO:0001835	"Extra nucleotides inserted between rearranged immunoglobulin segments." [SO:ke]	491486	\N	\N	sequence	1	SO	vertebrate_immune_system_gene_recombination_feature	N_region
SO:0000300	SO:0000301	\N	"" []	SO:0001835	"Extra nucleotides inserted between rearranged immunoglobulin segments." [SO:ke]	1074118	\N	\N	sequence	2	SO	recombination_feature_of_rearranged_gene	N_region
SO:0000299	SO:0000300	\N	"" []	SO:0001835	"Extra nucleotides inserted between rearranged immunoglobulin segments." [SO:ke]	1905252	\N	\N	sequence	3	SO	specific_recombination_site	N_region
SO:0000669	SO:0000299	\N	"" []	SO:0001835	"Extra nucleotides inserted between rearranged immunoglobulin segments." [SO:ke]	2929675	\N	\N	sequence	4	SO	sequence_rearrangement_feature	N_region
SO:0000298	SO:0000669	\N	"" []	SO:0001835	"Extra nucleotides inserted between rearranged immunoglobulin segments." [SO:ke]	4002752	\N	\N	sequence	5	SO	recombination_feature	N_region
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001835	"Extra nucleotides inserted between rearranged immunoglobulin segments." [SO:ke]	4966975	\N	SOFA	sequence	6	SO	biological_region	N_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001835	"Extra nucleotides inserted between rearranged immunoglobulin segments." [SO:ke]	5741538	SOFA	SOFA	sequence	7	SO	region	N_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001835	"Extra nucleotides inserted between rearranged immunoglobulin segments." [SO:ke]	6311247	SOFA	SOFA	sequence	8	SO	sequence_feature	N_region
SO:0001836	\N	\N	"The switch region of immunoglobulin heavy chains; it is involved in the rearrangement of heavy chain DNA leading to the expression of a different immunoglobulin classes from the same B-cell." [SO:ke]	SO:0001836	"The switch region of immunoglobulin heavy chains; it is involved in the rearrangement of heavy chain DNA leading to the expression of a different immunoglobulin classes from the same B-cell." [SO:ke]	46700	\N	\N	sequence	0	SO	S_region	S_region
SO:0000301	SO:0001836	\N	"" []	SO:0001836	"The switch region of immunoglobulin heavy chains; it is involved in the rearrangement of heavy chain DNA leading to the expression of a different immunoglobulin classes from the same B-cell." [SO:ke]	491487	\N	\N	sequence	1	SO	vertebrate_immune_system_gene_recombination_feature	S_region
SO:0000300	SO:0000301	\N	"" []	SO:0001836	"The switch region of immunoglobulin heavy chains; it is involved in the rearrangement of heavy chain DNA leading to the expression of a different immunoglobulin classes from the same B-cell." [SO:ke]	1074119	\N	\N	sequence	2	SO	recombination_feature_of_rearranged_gene	S_region
SO:0000299	SO:0000300	\N	"" []	SO:0001836	"The switch region of immunoglobulin heavy chains; it is involved in the rearrangement of heavy chain DNA leading to the expression of a different immunoglobulin classes from the same B-cell." [SO:ke]	1905253	\N	\N	sequence	3	SO	specific_recombination_site	S_region
SO:0000669	SO:0000299	\N	"" []	SO:0001836	"The switch region of immunoglobulin heavy chains; it is involved in the rearrangement of heavy chain DNA leading to the expression of a different immunoglobulin classes from the same B-cell." [SO:ke]	2929676	\N	\N	sequence	4	SO	sequence_rearrangement_feature	S_region
SO:0000298	SO:0000669	\N	"" []	SO:0001836	"The switch region of immunoglobulin heavy chains; it is involved in the rearrangement of heavy chain DNA leading to the expression of a different immunoglobulin classes from the same B-cell." [SO:ke]	4002753	\N	\N	sequence	5	SO	recombination_feature	S_region
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001836	"The switch region of immunoglobulin heavy chains; it is involved in the rearrangement of heavy chain DNA leading to the expression of a different immunoglobulin classes from the same B-cell." [SO:ke]	4966976	\N	SOFA	sequence	6	SO	biological_region	S_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001836	"The switch region of immunoglobulin heavy chains; it is involved in the rearrangement of heavy chain DNA leading to the expression of a different immunoglobulin classes from the same B-cell." [SO:ke]	5741539	SOFA	SOFA	sequence	7	SO	region	S_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001836	"The switch region of immunoglobulin heavy chains; it is involved in the rearrangement of heavy chain DNA leading to the expression of a different immunoglobulin classes from the same B-cell." [SO:ke]	6311248	SOFA	SOFA	sequence	8	SO	sequence_feature	S_region
SO:0001837	\N	\N	"A kind of insertion where the inserted sequence is a mobile element." [EBI:dvga]	SO:0001837	"A kind of insertion where the inserted sequence is a mobile element." [EBI:dvga]	46701	\N	\N	sequence	0	SO	mobile_element_insertion	mobile_element_insertion
SO:0000667	SO:0001837	\N	"The sequence of one or more nucleotides added between two adjacent nucleotides in the sequence." [SO:ke]	SO:0001837	"A kind of insertion where the inserted sequence is a mobile element." [EBI:dvga]	491488	\N	DBVAR,SOFA	sequence	1	SO	insertion	mobile_element_insertion
SO:0001059	SO:0000667	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0001837	"A kind of insertion where the inserted sequence is a mobile element." [EBI:dvga]	1074120	DBVAR,SOFA	SOFA	sequence	2	SO	sequence_alteration	mobile_element_insertion
SO:0001411	SO:0000667	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001837	"A kind of insertion where the inserted sequence is a mobile element." [EBI:dvga]	1074121	DBVAR,SOFA	SOFA	sequence	2	SO	biological_region	mobile_element_insertion
SO:0002072	SO:0001059	\N	"" []	SO:0001837	"A kind of insertion where the inserted sequence is a mobile element." [EBI:dvga]	1905254	SOFA	\N	sequence	3	SO	sequence_comparison	mobile_element_insertion
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001837	"A kind of insertion where the inserted sequence is a mobile element." [EBI:dvga]	1905255	SOFA	SOFA	sequence	3	SO	region	mobile_element_insertion
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001837	"A kind of insertion where the inserted sequence is a mobile element." [EBI:dvga]	2929677	\N	SOFA	sequence	4	SO	sequence_feature	mobile_element_insertion
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001837	"A kind of insertion where the inserted sequence is a mobile element." [EBI:dvga]	2929678	SOFA	SOFA	sequence	4	SO	sequence_feature	mobile_element_insertion
SO:0001838	\N	\N	"An insertion the sequence of which cannot be mapped to the reference genome." [NCBI:th]	SO:0001838	"An insertion the sequence of which cannot be mapped to the reference genome." [NCBI:th]	46702	\N	\N	sequence	0	SO	novel_sequence_insertion	novel_sequence_insertion
SO:0000667	SO:0001838	\N	"The sequence of one or more nucleotides added between two adjacent nucleotides in the sequence." [SO:ke]	SO:0001838	"An insertion the sequence of which cannot be mapped to the reference genome." [NCBI:th]	491489	\N	DBVAR,SOFA	sequence	1	SO	insertion	novel_sequence_insertion
SO:0001059	SO:0000667	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0001838	"An insertion the sequence of which cannot be mapped to the reference genome." [NCBI:th]	1074122	DBVAR,SOFA	SOFA	sequence	2	SO	sequence_alteration	novel_sequence_insertion
SO:0001411	SO:0000667	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001838	"An insertion the sequence of which cannot be mapped to the reference genome." [NCBI:th]	1074123	DBVAR,SOFA	SOFA	sequence	2	SO	biological_region	novel_sequence_insertion
SO:0002072	SO:0001059	\N	"" []	SO:0001838	"An insertion the sequence of which cannot be mapped to the reference genome." [NCBI:th]	1905256	SOFA	\N	sequence	3	SO	sequence_comparison	novel_sequence_insertion
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001838	"An insertion the sequence of which cannot be mapped to the reference genome." [NCBI:th]	1905257	SOFA	SOFA	sequence	3	SO	region	novel_sequence_insertion
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001838	"An insertion the sequence of which cannot be mapped to the reference genome." [NCBI:th]	2929679	\N	SOFA	sequence	4	SO	sequence_feature	novel_sequence_insertion
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001838	"An insertion the sequence of which cannot be mapped to the reference genome." [NCBI:th]	2929680	SOFA	SOFA	sequence	4	SO	sequence_feature	novel_sequence_insertion
SO:0001839	\N	\N	"A promoter element with consensus sequence GTGRGAA, bound by CSL (CBF1/RBP-JK/Suppressor of Hairless/LAG-1) transcription factors." [PMID:19101542]	SO:0001839	"A promoter element with consensus sequence GTGRGAA, bound by CSL (CBF1/RBP-JK/Suppressor of Hairless/LAG-1) transcription factors." [PMID:19101542]	46703	\N	\N	sequence	0	SO	CSL_response_element	CSL_response_element
SO:0001659	SO:0001839	\N	"" []	SO:0001839	"A promoter element with consensus sequence GTGRGAA, bound by CSL (CBF1/RBP-JK/Suppressor of Hairless/LAG-1) transcription factors." [PMID:19101542]	491490	\N	\N	sequence	1	SO	promoter_element	CSL_response_element
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001839	"A promoter element with consensus sequence GTGRGAA, bound by CSL (CBF1/RBP-JK/Suppressor of Hairless/LAG-1) transcription factors." [PMID:19101542]	1074124	\N	\N	sequence	2	SO	DNA_motif	CSL_response_element
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001839	"A promoter element with consensus sequence GTGRGAA, bound by CSL (CBF1/RBP-JK/Suppressor of Hairless/LAG-1) transcription factors." [PMID:19101542]	1905258	\N	SOFA	sequence	3	SO	nucleotide_motif	CSL_response_element
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001839	"A promoter element with consensus sequence GTGRGAA, bound by CSL (CBF1/RBP-JK/Suppressor of Hairless/LAG-1) transcription factors." [PMID:19101542]	2929681	SOFA	SOFA	sequence	4	SO	sequence_motif	CSL_response_element
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001839	"A promoter element with consensus sequence GTGRGAA, bound by CSL (CBF1/RBP-JK/Suppressor of Hairless/LAG-1) transcription factors." [PMID:19101542]	4002754	SOFA	SOFA	sequence	5	SO	biological_region	CSL_response_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001839	"A promoter element with consensus sequence GTGRGAA, bound by CSL (CBF1/RBP-JK/Suppressor of Hairless/LAG-1) transcription factors." [PMID:19101542]	4966977	SOFA	SOFA	sequence	6	SO	region	CSL_response_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001839	"A promoter element with consensus sequence GTGRGAA, bound by CSL (CBF1/RBP-JK/Suppressor of Hairless/LAG-1) transcription factors." [PMID:19101542]	5741540	SOFA	SOFA	sequence	7	SO	sequence_feature	CSL_response_element
SO:0001840	\N	\N	"A GATA transcription factor element containing the consensus sequence WGATAR (in which W indicates A/T and R indicates A/G)." [PMID:8321208]	SO:0001840	"A GATA transcription factor element containing the consensus sequence WGATAR (in which W indicates A/T and R indicates A/G)." [PMID:8321208]	46704	\N	\N	sequence	0	SO	GATA_box	GATA_box
SO:0001660	SO:0001840	\N	"" []	SO:0001840	"A GATA transcription factor element containing the consensus sequence WGATAR (in which W indicates A/T and R indicates A/G)." [PMID:8321208]	491491	\N	\N	sequence	1	SO	core_promoter_element	GATA_box
SO:0001659	SO:0001660	\N	"" []	SO:0001840	"A GATA transcription factor element containing the consensus sequence WGATAR (in which W indicates A/T and R indicates A/G)." [PMID:8321208]	1074125	\N	\N	sequence	2	SO	promoter_element	GATA_box
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001840	"A GATA transcription factor element containing the consensus sequence WGATAR (in which W indicates A/T and R indicates A/G)." [PMID:8321208]	1905259	\N	\N	sequence	3	SO	DNA_motif	GATA_box
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001840	"A GATA transcription factor element containing the consensus sequence WGATAR (in which W indicates A/T and R indicates A/G)." [PMID:8321208]	2929682	\N	SOFA	sequence	4	SO	nucleotide_motif	GATA_box
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001840	"A GATA transcription factor element containing the consensus sequence WGATAR (in which W indicates A/T and R indicates A/G)." [PMID:8321208]	4002755	SOFA	SOFA	sequence	5	SO	sequence_motif	GATA_box
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001840	"A GATA transcription factor element containing the consensus sequence WGATAR (in which W indicates A/T and R indicates A/G)." [PMID:8321208]	4966978	SOFA	SOFA	sequence	6	SO	biological_region	GATA_box
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001840	"A GATA transcription factor element containing the consensus sequence WGATAR (in which W indicates A/T and R indicates A/G)." [PMID:8321208]	5741541	SOFA	SOFA	sequence	7	SO	region	GATA_box
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001840	"A GATA transcription factor element containing the consensus sequence WGATAR (in which W indicates A/T and R indicates A/G)." [PMID:8321208]	6311249	SOFA	SOFA	sequence	8	SO	sequence_feature	GATA_box
SO:0001841	\N	\N	"A pseudogene in the reference genome, though known to be intact in the genomes of other individuals of the same species. The annotation process has confirmed that the pseudogenisation event is not a genomic sequencing error." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, JAX:hd]	SO:0001841	"A pseudogene in the reference genome, though known to be intact in the genomes of other individuals of the same species. The annotation process has confirmed that the pseudogenisation event is not a genomic sequencing error." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, JAX:hd]	46705	\N	\N	sequence	0	SO	polymorphic_pseudogene	polymorphic_pseudogene
SO:0000336	SO:0001841	\N	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	SO:0001841	"A pseudogene in the reference genome, though known to be intact in the genomes of other individuals of the same species. The annotation process has confirmed that the pseudogenisation event is not a genomic sequencing error." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, JAX:hd]	491492	\N	SOFA	sequence	1	SO	pseudogene	polymorphic_pseudogene
SO:0001411	SO:0000336	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001841	"A pseudogene in the reference genome, though known to be intact in the genomes of other individuals of the same species. The annotation process has confirmed that the pseudogenisation event is not a genomic sequencing error." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, JAX:hd]	1074126	SOFA	SOFA	sequence	2	SO	biological_region	polymorphic_pseudogene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001841	"A pseudogene in the reference genome, though known to be intact in the genomes of other individuals of the same species. The annotation process has confirmed that the pseudogenisation event is not a genomic sequencing error." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, JAX:hd]	1905260	SOFA	SOFA	sequence	3	SO	region	polymorphic_pseudogene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001841	"A pseudogene in the reference genome, though known to be intact in the genomes of other individuals of the same species. The annotation process has confirmed that the pseudogenisation event is not a genomic sequencing error." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, JAX:hd]	2929683	SOFA	SOFA	sequence	4	SO	sequence_feature	polymorphic_pseudogene
SO:0001842	\N	\N	"A promoter element with consensus sequence TGACTCA, bound by AP-1 and related transcription factors." [PMID:1899230, PMID:3034432, PMID:3125983]	SO:0001842	"A promoter element with consensus sequence TGACTCA, bound by AP-1 and related transcription factors." [PMID:1899230, PMID:3034432, PMID:3125983]	46706	\N	\N	sequence	0	SO	AP_1_binding_site	AP_1_binding_site
SO:0001659	SO:0001842	\N	"" []	SO:0001842	"A promoter element with consensus sequence TGACTCA, bound by AP-1 and related transcription factors." [PMID:1899230, PMID:3034432, PMID:3125983]	491493	\N	\N	sequence	1	SO	promoter_element	AP_1_binding_site
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001842	"A promoter element with consensus sequence TGACTCA, bound by AP-1 and related transcription factors." [PMID:1899230, PMID:3034432, PMID:3125983]	1074127	\N	\N	sequence	2	SO	DNA_motif	AP_1_binding_site
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001842	"A promoter element with consensus sequence TGACTCA, bound by AP-1 and related transcription factors." [PMID:1899230, PMID:3034432, PMID:3125983]	1905261	\N	SOFA	sequence	3	SO	nucleotide_motif	AP_1_binding_site
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001842	"A promoter element with consensus sequence TGACTCA, bound by AP-1 and related transcription factors." [PMID:1899230, PMID:3034432, PMID:3125983]	2929684	SOFA	SOFA	sequence	4	SO	sequence_motif	AP_1_binding_site
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001842	"A promoter element with consensus sequence TGACTCA, bound by AP-1 and related transcription factors." [PMID:1899230, PMID:3034432, PMID:3125983]	4002756	SOFA	SOFA	sequence	5	SO	biological_region	AP_1_binding_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001842	"A promoter element with consensus sequence TGACTCA, bound by AP-1 and related transcription factors." [PMID:1899230, PMID:3034432, PMID:3125983]	4966979	SOFA	SOFA	sequence	6	SO	region	AP_1_binding_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001842	"A promoter element with consensus sequence TGACTCA, bound by AP-1 and related transcription factors." [PMID:1899230, PMID:3034432, PMID:3125983]	5741542	SOFA	SOFA	sequence	7	SO	sequence_feature	AP_1_binding_site
SO:0001843	\N	\N	"A promoter element with consensus sequence TGACGTCA; bound by the ATF/CREB family of transcription factors." [PMID:11483355, PMID:11483993]	SO:0001843	"A promoter element with consensus sequence TGACGTCA; bound by the ATF/CREB family of transcription factors." [PMID:11483355, PMID:11483993]	46707	\N	\N	sequence	0	SO	CRE	CRE
SO:0001659	SO:0001843	\N	"" []	SO:0001843	"A promoter element with consensus sequence TGACGTCA; bound by the ATF/CREB family of transcription factors." [PMID:11483355, PMID:11483993]	491494	\N	\N	sequence	1	SO	promoter_element	CRE
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001843	"A promoter element with consensus sequence TGACGTCA; bound by the ATF/CREB family of transcription factors." [PMID:11483355, PMID:11483993]	1074128	\N	\N	sequence	2	SO	DNA_motif	CRE
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001843	"A promoter element with consensus sequence TGACGTCA; bound by the ATF/CREB family of transcription factors." [PMID:11483355, PMID:11483993]	1905262	\N	SOFA	sequence	3	SO	nucleotide_motif	CRE
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001843	"A promoter element with consensus sequence TGACGTCA; bound by the ATF/CREB family of transcription factors." [PMID:11483355, PMID:11483993]	2929685	SOFA	SOFA	sequence	4	SO	sequence_motif	CRE
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001843	"A promoter element with consensus sequence TGACGTCA; bound by the ATF/CREB family of transcription factors." [PMID:11483355, PMID:11483993]	4002757	SOFA	SOFA	sequence	5	SO	biological_region	CRE
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001843	"A promoter element with consensus sequence TGACGTCA; bound by the ATF/CREB family of transcription factors." [PMID:11483355, PMID:11483993]	4966980	SOFA	SOFA	sequence	6	SO	region	CRE
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001843	"A promoter element with consensus sequence TGACGTCA; bound by the ATF/CREB family of transcription factors." [PMID:11483355, PMID:11483993]	5741543	SOFA	SOFA	sequence	7	SO	sequence_feature	CRE
SO:0001844	\N	\N	"A promoter element bound by copper ion-sensing transcription factors such as S. cerevisiae Mac1p or S. pombe Cuf1; the consensus sequence is HTHNNGCTGD (more specifically TTTGCKCR in budding yeast)." [PMID:10593913, PMID:9188496, PMID:9211922]	SO:0001844	"A promoter element bound by copper ion-sensing transcription factors such as S. cerevisiae Mac1p or S. pombe Cuf1; the consensus sequence is HTHNNGCTGD (more specifically TTTGCKCR in budding yeast)." [PMID:10593913, PMID:9188496, PMID:9211922]	46708	\N	\N	sequence	0	SO	CuRE	CuRE
SO:0001659	SO:0001844	\N	"" []	SO:0001844	"A promoter element bound by copper ion-sensing transcription factors such as S. cerevisiae Mac1p or S. pombe Cuf1; the consensus sequence is HTHNNGCTGD (more specifically TTTGCKCR in budding yeast)." [PMID:10593913, PMID:9188496, PMID:9211922]	491495	\N	\N	sequence	1	SO	promoter_element	CuRE
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001844	"A promoter element bound by copper ion-sensing transcription factors such as S. cerevisiae Mac1p or S. pombe Cuf1; the consensus sequence is HTHNNGCTGD (more specifically TTTGCKCR in budding yeast)." [PMID:10593913, PMID:9188496, PMID:9211922]	1074129	\N	\N	sequence	2	SO	DNA_motif	CuRE
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001844	"A promoter element bound by copper ion-sensing transcription factors such as S. cerevisiae Mac1p or S. pombe Cuf1; the consensus sequence is HTHNNGCTGD (more specifically TTTGCKCR in budding yeast)." [PMID:10593913, PMID:9188496, PMID:9211922]	1905263	\N	SOFA	sequence	3	SO	nucleotide_motif	CuRE
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001844	"A promoter element bound by copper ion-sensing transcription factors such as S. cerevisiae Mac1p or S. pombe Cuf1; the consensus sequence is HTHNNGCTGD (more specifically TTTGCKCR in budding yeast)." [PMID:10593913, PMID:9188496, PMID:9211922]	2929686	SOFA	SOFA	sequence	4	SO	sequence_motif	CuRE
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001844	"A promoter element bound by copper ion-sensing transcription factors such as S. cerevisiae Mac1p or S. pombe Cuf1; the consensus sequence is HTHNNGCTGD (more specifically TTTGCKCR in budding yeast)." [PMID:10593913, PMID:9188496, PMID:9211922]	4002758	SOFA	SOFA	sequence	5	SO	biological_region	CuRE
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001844	"A promoter element bound by copper ion-sensing transcription factors such as S. cerevisiae Mac1p or S. pombe Cuf1; the consensus sequence is HTHNNGCTGD (more specifically TTTGCKCR in budding yeast)." [PMID:10593913, PMID:9188496, PMID:9211922]	4966981	SOFA	SOFA	sequence	6	SO	region	CuRE
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001844	"A promoter element bound by copper ion-sensing transcription factors such as S. cerevisiae Mac1p or S. pombe Cuf1; the consensus sequence is HTHNNGCTGD (more specifically TTTGCKCR in budding yeast)." [PMID:10593913, PMID:9188496, PMID:9211922]	5741544	SOFA	SOFA	sequence	7	SO	sequence_feature	CuRE
SO:0001845	\N	\N	"A promoter element with consensus sequence CGWGGWNGMM, bound by transcription factors related to RecA and found in promoters of genes expressed following several types of DNA damage or inhibition of DNA synthesis." [PMID:11073995, PMID:8668127]	SO:0001845	"A promoter element with consensus sequence CGWGGWNGMM, bound by transcription factors related to RecA and found in promoters of genes expressed following several types of DNA damage or inhibition of DNA synthesis." [PMID:11073995, PMID:8668127]	46709	\N	\N	sequence	0	SO	DRE	DRE
SO:0001659	SO:0001845	\N	"" []	SO:0001845	"A promoter element with consensus sequence CGWGGWNGMM, bound by transcription factors related to RecA and found in promoters of genes expressed following several types of DNA damage or inhibition of DNA synthesis." [PMID:11073995, PMID:8668127]	491496	\N	\N	sequence	1	SO	promoter_element	DRE
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001845	"A promoter element with consensus sequence CGWGGWNGMM, bound by transcription factors related to RecA and found in promoters of genes expressed following several types of DNA damage or inhibition of DNA synthesis." [PMID:11073995, PMID:8668127]	1074130	\N	\N	sequence	2	SO	DNA_motif	DRE
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001845	"A promoter element with consensus sequence CGWGGWNGMM, bound by transcription factors related to RecA and found in promoters of genes expressed following several types of DNA damage or inhibition of DNA synthesis." [PMID:11073995, PMID:8668127]	1905264	\N	SOFA	sequence	3	SO	nucleotide_motif	DRE
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001845	"A promoter element with consensus sequence CGWGGWNGMM, bound by transcription factors related to RecA and found in promoters of genes expressed following several types of DNA damage or inhibition of DNA synthesis." [PMID:11073995, PMID:8668127]	2929687	SOFA	SOFA	sequence	4	SO	sequence_motif	DRE
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001845	"A promoter element with consensus sequence CGWGGWNGMM, bound by transcription factors related to RecA and found in promoters of genes expressed following several types of DNA damage or inhibition of DNA synthesis." [PMID:11073995, PMID:8668127]	4002759	SOFA	SOFA	sequence	5	SO	biological_region	DRE
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001845	"A promoter element with consensus sequence CGWGGWNGMM, bound by transcription factors related to RecA and found in promoters of genes expressed following several types of DNA damage or inhibition of DNA synthesis." [PMID:11073995, PMID:8668127]	4966982	SOFA	SOFA	sequence	6	SO	region	DRE
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001845	"A promoter element with consensus sequence CGWGGWNGMM, bound by transcription factors related to RecA and found in promoters of genes expressed following several types of DNA damage or inhibition of DNA synthesis." [PMID:11073995, PMID:8668127]	5741545	SOFA	SOFA	sequence	7	SO	sequence_feature	DRE
SO:0001846	\N	\N	"A promoter element that has consensus sequence GTAAACAAACAAAM and contains a heptameric core GTAAACA, bound by transcription factors with a forkhead DNA-binding domain." [PMID:10747048, PMID:14871934]	SO:0001846	"A promoter element that has consensus sequence GTAAACAAACAAAM and contains a heptameric core GTAAACA, bound by transcription factors with a forkhead DNA-binding domain." [PMID:10747048, PMID:14871934]	46710	\N	\N	sequence	0	SO	FLEX_element	FLEX_element
SO:0001659	SO:0001846	\N	"" []	SO:0001846	"A promoter element that has consensus sequence GTAAACAAACAAAM and contains a heptameric core GTAAACA, bound by transcription factors with a forkhead DNA-binding domain." [PMID:10747048, PMID:14871934]	491497	\N	\N	sequence	1	SO	promoter_element	FLEX_element
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001846	"A promoter element that has consensus sequence GTAAACAAACAAAM and contains a heptameric core GTAAACA, bound by transcription factors with a forkhead DNA-binding domain." [PMID:10747048, PMID:14871934]	1074131	\N	\N	sequence	2	SO	DNA_motif	FLEX_element
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001846	"A promoter element that has consensus sequence GTAAACAAACAAAM and contains a heptameric core GTAAACA, bound by transcription factors with a forkhead DNA-binding domain." [PMID:10747048, PMID:14871934]	1905265	\N	SOFA	sequence	3	SO	nucleotide_motif	FLEX_element
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001846	"A promoter element that has consensus sequence GTAAACAAACAAAM and contains a heptameric core GTAAACA, bound by transcription factors with a forkhead DNA-binding domain." [PMID:10747048, PMID:14871934]	2929688	SOFA	SOFA	sequence	4	SO	sequence_motif	FLEX_element
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001846	"A promoter element that has consensus sequence GTAAACAAACAAAM and contains a heptameric core GTAAACA, bound by transcription factors with a forkhead DNA-binding domain." [PMID:10747048, PMID:14871934]	4002760	SOFA	SOFA	sequence	5	SO	biological_region	FLEX_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001846	"A promoter element that has consensus sequence GTAAACAAACAAAM and contains a heptameric core GTAAACA, bound by transcription factors with a forkhead DNA-binding domain." [PMID:10747048, PMID:14871934]	4966983	SOFA	SOFA	sequence	6	SO	region	FLEX_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001846	"A promoter element that has consensus sequence GTAAACAAACAAAM and contains a heptameric core GTAAACA, bound by transcription factors with a forkhead DNA-binding domain." [PMID:10747048, PMID:14871934]	5741546	SOFA	SOFA	sequence	7	SO	sequence_feature	FLEX_element
SO:0001847	\N	\N	"A promoter element with consensus sequence TTTRTTTACA, bound by transcription factors with a forkhead DNA-binding domain." [PMID:15195092]	SO:0001847	"A promoter element with consensus sequence TTTRTTTACA, bound by transcription factors with a forkhead DNA-binding domain." [PMID:15195092]	46711	\N	\N	sequence	0	SO	forkhead_motif	forkhead_motif
SO:0001659	SO:0001847	\N	"" []	SO:0001847	"A promoter element with consensus sequence TTTRTTTACA, bound by transcription factors with a forkhead DNA-binding domain." [PMID:15195092]	491498	\N	\N	sequence	1	SO	promoter_element	forkhead_motif
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001847	"A promoter element with consensus sequence TTTRTTTACA, bound by transcription factors with a forkhead DNA-binding domain." [PMID:15195092]	1074132	\N	\N	sequence	2	SO	DNA_motif	forkhead_motif
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001847	"A promoter element with consensus sequence TTTRTTTACA, bound by transcription factors with a forkhead DNA-binding domain." [PMID:15195092]	1905266	\N	SOFA	sequence	3	SO	nucleotide_motif	forkhead_motif
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001847	"A promoter element with consensus sequence TTTRTTTACA, bound by transcription factors with a forkhead DNA-binding domain." [PMID:15195092]	2929689	SOFA	SOFA	sequence	4	SO	sequence_motif	forkhead_motif
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001847	"A promoter element with consensus sequence TTTRTTTACA, bound by transcription factors with a forkhead DNA-binding domain." [PMID:15195092]	4002761	SOFA	SOFA	sequence	5	SO	biological_region	forkhead_motif
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001847	"A promoter element with consensus sequence TTTRTTTACA, bound by transcription factors with a forkhead DNA-binding domain." [PMID:15195092]	4966984	SOFA	SOFA	sequence	6	SO	region	forkhead_motif
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001847	"A promoter element with consensus sequence TTTRTTTACA, bound by transcription factors with a forkhead DNA-binding domain." [PMID:15195092]	5741547	SOFA	SOFA	sequence	7	SO	sequence_feature	forkhead_motif
SO:0001848	\N	\N	"A core promoter element that has the consensus sequence CAGTCACA (or its inverted form TGTGACTG), and plays the role of a TATA box in promoters that do not contain a canonical TATA sequence." [PMID:21673110, PMID:7501449, PMID:8458332]	SO:0001848	"A core promoter element that has the consensus sequence CAGTCACA (or its inverted form TGTGACTG), and plays the role of a TATA box in promoters that do not contain a canonical TATA sequence." [PMID:21673110, PMID:7501449, PMID:8458332]	46712	\N	\N	sequence	0	SO	homol_D_box	homol_D_box
SO:0001660	SO:0001848	\N	"" []	SO:0001848	"A core promoter element that has the consensus sequence CAGTCACA (or its inverted form TGTGACTG), and plays the role of a TATA box in promoters that do not contain a canonical TATA sequence." [PMID:21673110, PMID:7501449, PMID:8458332]	491499	\N	\N	sequence	1	SO	core_promoter_element	homol_D_box
SO:0001659	SO:0001660	\N	"" []	SO:0001848	"A core promoter element that has the consensus sequence CAGTCACA (or its inverted form TGTGACTG), and plays the role of a TATA box in promoters that do not contain a canonical TATA sequence." [PMID:21673110, PMID:7501449, PMID:8458332]	1074133	\N	\N	sequence	2	SO	promoter_element	homol_D_box
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001848	"A core promoter element that has the consensus sequence CAGTCACA (or its inverted form TGTGACTG), and plays the role of a TATA box in promoters that do not contain a canonical TATA sequence." [PMID:21673110, PMID:7501449, PMID:8458332]	1905267	\N	\N	sequence	3	SO	DNA_motif	homol_D_box
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001848	"A core promoter element that has the consensus sequence CAGTCACA (or its inverted form TGTGACTG), and plays the role of a TATA box in promoters that do not contain a canonical TATA sequence." [PMID:21673110, PMID:7501449, PMID:8458332]	2929690	\N	SOFA	sequence	4	SO	nucleotide_motif	homol_D_box
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001848	"A core promoter element that has the consensus sequence CAGTCACA (or its inverted form TGTGACTG), and plays the role of a TATA box in promoters that do not contain a canonical TATA sequence." [PMID:21673110, PMID:7501449, PMID:8458332]	4002762	SOFA	SOFA	sequence	5	SO	sequence_motif	homol_D_box
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001848	"A core promoter element that has the consensus sequence CAGTCACA (or its inverted form TGTGACTG), and plays the role of a TATA box in promoters that do not contain a canonical TATA sequence." [PMID:21673110, PMID:7501449, PMID:8458332]	4966985	SOFA	SOFA	sequence	6	SO	biological_region	homol_D_box
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001848	"A core promoter element that has the consensus sequence CAGTCACA (or its inverted form TGTGACTG), and plays the role of a TATA box in promoters that do not contain a canonical TATA sequence." [PMID:21673110, PMID:7501449, PMID:8458332]	5741548	SOFA	SOFA	sequence	7	SO	region	homol_D_box
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001848	"A core promoter element that has the consensus sequence CAGTCACA (or its inverted form TGTGACTG), and plays the role of a TATA box in promoters that do not contain a canonical TATA sequence." [PMID:21673110, PMID:7501449, PMID:8458332]	6311250	SOFA	SOFA	sequence	8	SO	sequence_feature	homol_D_box
SO:0001849	\N	\N	"A core promoter element that has the consensus sequence ACCCTACCCT (or its inverted form AGGGTAGGGT), and is found near the homol D box in some promoters that use a homol D box instead of a canonical TATA sequence." [PMID:7501449]	SO:0001849	"A core promoter element that has the consensus sequence ACCCTACCCT (or its inverted form AGGGTAGGGT), and is found near the homol D box in some promoters that use a homol D box instead of a canonical TATA sequence." [PMID:7501449]	46713	\N	\N	sequence	0	SO	homol_E_box	homol_E_box
SO:0001659	SO:0001849	\N	"" []	SO:0001849	"A core promoter element that has the consensus sequence ACCCTACCCT (or its inverted form AGGGTAGGGT), and is found near the homol D box in some promoters that use a homol D box instead of a canonical TATA sequence." [PMID:7501449]	491500	\N	\N	sequence	1	SO	promoter_element	homol_E_box
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001849	"A core promoter element that has the consensus sequence ACCCTACCCT (or its inverted form AGGGTAGGGT), and is found near the homol D box in some promoters that use a homol D box instead of a canonical TATA sequence." [PMID:7501449]	1074134	\N	\N	sequence	2	SO	DNA_motif	homol_E_box
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001849	"A core promoter element that has the consensus sequence ACCCTACCCT (or its inverted form AGGGTAGGGT), and is found near the homol D box in some promoters that use a homol D box instead of a canonical TATA sequence." [PMID:7501449]	1905268	\N	SOFA	sequence	3	SO	nucleotide_motif	homol_E_box
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001849	"A core promoter element that has the consensus sequence ACCCTACCCT (or its inverted form AGGGTAGGGT), and is found near the homol D box in some promoters that use a homol D box instead of a canonical TATA sequence." [PMID:7501449]	2929691	SOFA	SOFA	sequence	4	SO	sequence_motif	homol_E_box
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001849	"A core promoter element that has the consensus sequence ACCCTACCCT (or its inverted form AGGGTAGGGT), and is found near the homol D box in some promoters that use a homol D box instead of a canonical TATA sequence." [PMID:7501449]	4002763	SOFA	SOFA	sequence	5	SO	biological_region	homol_E_box
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001849	"A core promoter element that has the consensus sequence ACCCTACCCT (or its inverted form AGGGTAGGGT), and is found near the homol D box in some promoters that use a homol D box instead of a canonical TATA sequence." [PMID:7501449]	4966986	SOFA	SOFA	sequence	6	SO	region	homol_E_box
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001849	"A core promoter element that has the consensus sequence ACCCTACCCT (or its inverted form AGGGTAGGGT), and is found near the homol D box in some promoters that use a homol D box instead of a canonical TATA sequence." [PMID:7501449]	5741549	SOFA	SOFA	sequence	7	SO	sequence_feature	homol_E_box
SO:0001850	\N	\N	"A promoter element that consists of at least three copies of the pentanucleotide NGAAN, bound by the heat shock transcription factor HSF." [PMID:17347150, PMID:8689565]	SO:0001850	"A promoter element that consists of at least three copies of the pentanucleotide NGAAN, bound by the heat shock transcription factor HSF." [PMID:17347150, PMID:8689565]	46714	\N	\N	sequence	0	SO	HSE	HSE
SO:0001659	SO:0001850	\N	"" []	SO:0001850	"A promoter element that consists of at least three copies of the pentanucleotide NGAAN, bound by the heat shock transcription factor HSF." [PMID:17347150, PMID:8689565]	491501	\N	\N	sequence	1	SO	promoter_element	HSE
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001850	"A promoter element that consists of at least three copies of the pentanucleotide NGAAN, bound by the heat shock transcription factor HSF." [PMID:17347150, PMID:8689565]	1074135	\N	\N	sequence	2	SO	DNA_motif	HSE
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001850	"A promoter element that consists of at least three copies of the pentanucleotide NGAAN, bound by the heat shock transcription factor HSF." [PMID:17347150, PMID:8689565]	1905269	\N	SOFA	sequence	3	SO	nucleotide_motif	HSE
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001850	"A promoter element that consists of at least three copies of the pentanucleotide NGAAN, bound by the heat shock transcription factor HSF." [PMID:17347150, PMID:8689565]	2929692	SOFA	SOFA	sequence	4	SO	sequence_motif	HSE
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001850	"A promoter element that consists of at least three copies of the pentanucleotide NGAAN, bound by the heat shock transcription factor HSF." [PMID:17347150, PMID:8689565]	4002764	SOFA	SOFA	sequence	5	SO	biological_region	HSE
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001850	"A promoter element that consists of at least three copies of the pentanucleotide NGAAN, bound by the heat shock transcription factor HSF." [PMID:17347150, PMID:8689565]	4966987	SOFA	SOFA	sequence	6	SO	region	HSE
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001850	"A promoter element that consists of at least three copies of the pentanucleotide NGAAN, bound by the heat shock transcription factor HSF." [PMID:17347150, PMID:8689565]	5741550	SOFA	SOFA	sequence	7	SO	sequence_feature	HSE
SO:0001851	\N	\N	"A GATA promoter element with consensus sequence WGATAA, found in promoters of genes repressed in the presence of iron." [PMID:11956219, PMID:17211681]	SO:0001851	"A GATA promoter element with consensus sequence WGATAA, found in promoters of genes repressed in the presence of iron." [PMID:11956219, PMID:17211681]	46715	\N	\N	sequence	0	SO	iron_repressed_GATA_element	iron_repressed_GATA_element
SO:0001840	SO:0001851	\N	"A GATA transcription factor element containing the consensus sequence WGATAR (in which W indicates A/T and R indicates A/G)." [PMID:8321208]	SO:0001851	"A GATA promoter element with consensus sequence WGATAA, found in promoters of genes repressed in the presence of iron." [PMID:11956219, PMID:17211681]	491502	\N	\N	sequence	1	SO	GATA_box	iron_repressed_GATA_element
SO:0001660	SO:0001840	\N	"" []	SO:0001851	"A GATA promoter element with consensus sequence WGATAA, found in promoters of genes repressed in the presence of iron." [PMID:11956219, PMID:17211681]	1074136	\N	\N	sequence	2	SO	core_promoter_element	iron_repressed_GATA_element
SO:0001659	SO:0001660	\N	"" []	SO:0001851	"A GATA promoter element with consensus sequence WGATAA, found in promoters of genes repressed in the presence of iron." [PMID:11956219, PMID:17211681]	1905270	\N	\N	sequence	3	SO	promoter_element	iron_repressed_GATA_element
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001851	"A GATA promoter element with consensus sequence WGATAA, found in promoters of genes repressed in the presence of iron." [PMID:11956219, PMID:17211681]	2929693	\N	\N	sequence	4	SO	DNA_motif	iron_repressed_GATA_element
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001851	"A GATA promoter element with consensus sequence WGATAA, found in promoters of genes repressed in the presence of iron." [PMID:11956219, PMID:17211681]	4002765	\N	SOFA	sequence	5	SO	nucleotide_motif	iron_repressed_GATA_element
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001851	"A GATA promoter element with consensus sequence WGATAA, found in promoters of genes repressed in the presence of iron." [PMID:11956219, PMID:17211681]	4966988	SOFA	SOFA	sequence	6	SO	sequence_motif	iron_repressed_GATA_element
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001851	"A GATA promoter element with consensus sequence WGATAA, found in promoters of genes repressed in the presence of iron." [PMID:11956219, PMID:17211681]	5741551	SOFA	SOFA	sequence	7	SO	biological_region	iron_repressed_GATA_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001851	"A GATA promoter element with consensus sequence WGATAA, found in promoters of genes repressed in the presence of iron." [PMID:11956219, PMID:17211681]	6311251	SOFA	SOFA	sequence	8	SO	region	iron_repressed_GATA_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001851	"A GATA promoter element with consensus sequence WGATAA, found in promoters of genes repressed in the presence of iron." [PMID:11956219, PMID:17211681]	6699492	SOFA	SOFA	sequence	9	SO	sequence_feature	iron_repressed_GATA_element
SO:0001852	\N	\N	"A promoter element with consensus sequence ACAAT, found in promoters of mating type M-specific genes in fission yeast and bound by the transcription factor Mat1-Mc." [PMID:9233811]	SO:0001852	"A promoter element with consensus sequence ACAAT, found in promoters of mating type M-specific genes in fission yeast and bound by the transcription factor Mat1-Mc." [PMID:9233811]	46716	\N	\N	sequence	0	SO	mating_type_M_box	mating_type_M_box
SO:0001659	SO:0001852	\N	"" []	SO:0001852	"A promoter element with consensus sequence ACAAT, found in promoters of mating type M-specific genes in fission yeast and bound by the transcription factor Mat1-Mc." [PMID:9233811]	491503	\N	\N	sequence	1	SO	promoter_element	mating_type_M_box
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001852	"A promoter element with consensus sequence ACAAT, found in promoters of mating type M-specific genes in fission yeast and bound by the transcription factor Mat1-Mc." [PMID:9233811]	1074137	\N	\N	sequence	2	SO	DNA_motif	mating_type_M_box
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001852	"A promoter element with consensus sequence ACAAT, found in promoters of mating type M-specific genes in fission yeast and bound by the transcription factor Mat1-Mc." [PMID:9233811]	1905271	\N	SOFA	sequence	3	SO	nucleotide_motif	mating_type_M_box
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001852	"A promoter element with consensus sequence ACAAT, found in promoters of mating type M-specific genes in fission yeast and bound by the transcription factor Mat1-Mc." [PMID:9233811]	2929694	SOFA	SOFA	sequence	4	SO	sequence_motif	mating_type_M_box
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001852	"A promoter element with consensus sequence ACAAT, found in promoters of mating type M-specific genes in fission yeast and bound by the transcription factor Mat1-Mc." [PMID:9233811]	4002766	SOFA	SOFA	sequence	5	SO	biological_region	mating_type_M_box
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001852	"A promoter element with consensus sequence ACAAT, found in promoters of mating type M-specific genes in fission yeast and bound by the transcription factor Mat1-Mc." [PMID:9233811]	4966989	SOFA	SOFA	sequence	6	SO	region	mating_type_M_box
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001852	"A promoter element with consensus sequence ACAAT, found in promoters of mating type M-specific genes in fission yeast and bound by the transcription factor Mat1-Mc." [PMID:9233811]	5741552	SOFA	SOFA	sequence	7	SO	sequence_feature	mating_type_M_box
SO:0001853	\N	\N	"A non-palindromic sequence found in the promoters of genes whose expression is regulated in response to androgen." [PMID:21796522]	SO:0001853	"A non-palindromic sequence found in the promoters of genes whose expression is regulated in response to androgen." [PMID:21796522]	46717	\N	\N	sequence	0	SO	androgen_response_element	androgen_response_element
SO:0000713	SO:0001853	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001853	"A non-palindromic sequence found in the promoters of genes whose expression is regulated in response to androgen." [PMID:21796522]	491504	\N	\N	sequence	1	SO	DNA_motif	androgen_response_element
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001853	"A non-palindromic sequence found in the promoters of genes whose expression is regulated in response to androgen." [PMID:21796522]	1074138	\N	SOFA	sequence	2	SO	nucleotide_motif	androgen_response_element
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001853	"A non-palindromic sequence found in the promoters of genes whose expression is regulated in response to androgen." [PMID:21796522]	1905272	SOFA	SOFA	sequence	3	SO	sequence_motif	androgen_response_element
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001853	"A non-palindromic sequence found in the promoters of genes whose expression is regulated in response to androgen." [PMID:21796522]	2929695	SOFA	SOFA	sequence	4	SO	biological_region	androgen_response_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001853	"A non-palindromic sequence found in the promoters of genes whose expression is regulated in response to androgen." [PMID:21796522]	4002767	SOFA	SOFA	sequence	5	SO	region	androgen_response_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001853	"A non-palindromic sequence found in the promoters of genes whose expression is regulated in response to androgen." [PMID:21796522]	4966990	SOFA	SOFA	sequence	6	SO	sequence_feature	androgen_response_element
SO:0001854	\N	\N	"A smFISH is a probe that binds RNA in a single molecule in situ hybridization experiment." [PMID:18806792]	SO:0001854	"A smFISH is a probe that binds RNA in a single molecule in situ hybridization experiment." [PMID:18806792]	46718	\N	\N	sequence	0	SO	smFISH_probe	smFISH_probe
SO:0000051	SO:0001854	\N	"A DNA sequence used experimentally to detect the presence or absence of a complementary nucleic acid." [SO:ma]	SO:0001854	"A smFISH is a probe that binds RNA in a single molecule in situ hybridization experiment." [PMID:18806792]	491505	\N	\N	sequence	1	SO	probe	smFISH_probe
SO:0000696	SO:0000051	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0001854	"A smFISH is a probe that binds RNA in a single molecule in situ hybridization experiment." [PMID:18806792]	1074139	\N	SOFA	sequence	2	SO	oligo	smFISH_probe
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0001854	"A smFISH is a probe that binds RNA in a single molecule in situ hybridization experiment." [PMID:18806792]	1905273	SOFA	SOFA	sequence	3	SO	reagent	smFISH_probe
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001854	"A smFISH is a probe that binds RNA in a single molecule in situ hybridization experiment." [PMID:18806792]	2929696	SOFA	SOFA	sequence	4	SO	biomaterial_region	smFISH_probe
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001854	"A smFISH is a probe that binds RNA in a single molecule in situ hybridization experiment." [PMID:18806792]	4002768	SOFA	SOFA	sequence	5	SO	region	smFISH_probe
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001854	"A smFISH is a probe that binds RNA in a single molecule in situ hybridization experiment." [PMID:18806792]	4966991	SOFA	SOFA	sequence	6	SO	sequence_feature	smFISH_probe
SO:0001855	\N	\N	"A promoter element with consensus sequence ACGCGT, bound by the transcription factor complex MBF (MCB-binding factor) and found in promoters of genes expressed during the G1/S transition of the cell cycle." [PMID:16285853]	SO:0001855	"A promoter element with consensus sequence ACGCGT, bound by the transcription factor complex MBF (MCB-binding factor) and found in promoters of genes expressed during the G1/S transition of the cell cycle." [PMID:16285853]	46719	\N	\N	sequence	0	SO	MCB	MCB
SO:0001659	SO:0001855	\N	"" []	SO:0001855	"A promoter element with consensus sequence ACGCGT, bound by the transcription factor complex MBF (MCB-binding factor) and found in promoters of genes expressed during the G1/S transition of the cell cycle." [PMID:16285853]	491506	\N	\N	sequence	1	SO	promoter_element	MCB
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001855	"A promoter element with consensus sequence ACGCGT, bound by the transcription factor complex MBF (MCB-binding factor) and found in promoters of genes expressed during the G1/S transition of the cell cycle." [PMID:16285853]	1074140	\N	\N	sequence	2	SO	DNA_motif	MCB
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001855	"A promoter element with consensus sequence ACGCGT, bound by the transcription factor complex MBF (MCB-binding factor) and found in promoters of genes expressed during the G1/S transition of the cell cycle." [PMID:16285853]	1905274	\N	SOFA	sequence	3	SO	nucleotide_motif	MCB
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001855	"A promoter element with consensus sequence ACGCGT, bound by the transcription factor complex MBF (MCB-binding factor) and found in promoters of genes expressed during the G1/S transition of the cell cycle." [PMID:16285853]	2929697	SOFA	SOFA	sequence	4	SO	sequence_motif	MCB
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001855	"A promoter element with consensus sequence ACGCGT, bound by the transcription factor complex MBF (MCB-binding factor) and found in promoters of genes expressed during the G1/S transition of the cell cycle." [PMID:16285853]	4002769	SOFA	SOFA	sequence	5	SO	biological_region	MCB
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001855	"A promoter element with consensus sequence ACGCGT, bound by the transcription factor complex MBF (MCB-binding factor) and found in promoters of genes expressed during the G1/S transition of the cell cycle." [PMID:16285853]	4966992	SOFA	SOFA	sequence	6	SO	region	MCB
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001855	"A promoter element with consensus sequence ACGCGT, bound by the transcription factor complex MBF (MCB-binding factor) and found in promoters of genes expressed during the G1/S transition of the cell cycle." [PMID:16285853]	5741553	SOFA	SOFA	sequence	7	SO	sequence_feature	MCB
SO:0001856	\N	\N	"A promoter element with consensus sequence CCAAT, bound by a protein complex that represses transcription in response to low iron levels." [PMID:16963626]	SO:0001856	"A promoter element with consensus sequence CCAAT, bound by a protein complex that represses transcription in response to low iron levels." [PMID:16963626]	46720	\N	\N	sequence	0	SO	CCAAT_motif	CCAAT_motif
SO:0001659	SO:0001856	\N	"" []	SO:0001856	"A promoter element with consensus sequence CCAAT, bound by a protein complex that represses transcription in response to low iron levels." [PMID:16963626]	491507	\N	\N	sequence	1	SO	promoter_element	CCAAT_motif
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001856	"A promoter element with consensus sequence CCAAT, bound by a protein complex that represses transcription in response to low iron levels." [PMID:16963626]	1074141	\N	\N	sequence	2	SO	DNA_motif	CCAAT_motif
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001856	"A promoter element with consensus sequence CCAAT, bound by a protein complex that represses transcription in response to low iron levels." [PMID:16963626]	1905275	\N	SOFA	sequence	3	SO	nucleotide_motif	CCAAT_motif
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001856	"A promoter element with consensus sequence CCAAT, bound by a protein complex that represses transcription in response to low iron levels." [PMID:16963626]	2929698	SOFA	SOFA	sequence	4	SO	sequence_motif	CCAAT_motif
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001856	"A promoter element with consensus sequence CCAAT, bound by a protein complex that represses transcription in response to low iron levels." [PMID:16963626]	4002770	SOFA	SOFA	sequence	5	SO	biological_region	CCAAT_motif
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001856	"A promoter element with consensus sequence CCAAT, bound by a protein complex that represses transcription in response to low iron levels." [PMID:16963626]	4966993	SOFA	SOFA	sequence	6	SO	region	CCAAT_motif
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001856	"A promoter element with consensus sequence CCAAT, bound by a protein complex that represses transcription in response to low iron levels." [PMID:16963626]	5741554	SOFA	SOFA	sequence	7	SO	sequence_feature	CCAAT_motif
SO:0001857	\N	\N	"A promoter element with consensus sequence CCAGCC, bound by the fungal transcription factor Ace2." [PMID:16678171]	SO:0001857	"A promoter element with consensus sequence CCAGCC, bound by the fungal transcription factor Ace2." [PMID:16678171]	46721	\N	\N	sequence	0	SO	Ace2_UAS	Ace2_UAS
SO:0001659	SO:0001857	\N	"" []	SO:0001857	"A promoter element with consensus sequence CCAGCC, bound by the fungal transcription factor Ace2." [PMID:16678171]	491508	\N	\N	sequence	1	SO	promoter_element	Ace2_UAS
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001857	"A promoter element with consensus sequence CCAGCC, bound by the fungal transcription factor Ace2." [PMID:16678171]	1074142	\N	\N	sequence	2	SO	DNA_motif	Ace2_UAS
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001857	"A promoter element with consensus sequence CCAGCC, bound by the fungal transcription factor Ace2." [PMID:16678171]	1905276	\N	SOFA	sequence	3	SO	nucleotide_motif	Ace2_UAS
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001857	"A promoter element with consensus sequence CCAGCC, bound by the fungal transcription factor Ace2." [PMID:16678171]	2929699	SOFA	SOFA	sequence	4	SO	sequence_motif	Ace2_UAS
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001857	"A promoter element with consensus sequence CCAGCC, bound by the fungal transcription factor Ace2." [PMID:16678171]	4002771	SOFA	SOFA	sequence	5	SO	biological_region	Ace2_UAS
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001857	"A promoter element with consensus sequence CCAGCC, bound by the fungal transcription factor Ace2." [PMID:16678171]	4966994	SOFA	SOFA	sequence	6	SO	region	Ace2_UAS
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001857	"A promoter element with consensus sequence CCAGCC, bound by the fungal transcription factor Ace2." [PMID:16678171]	5741555	SOFA	SOFA	sequence	7	SO	sequence_feature	Ace2_UAS
SO:0001858	\N	\N	"A promoter element with consensus sequence TTCTTTGTTY, bound an HMG-box transcription factor such as S. pombe Ste11, and found in promoters of genes up-regulated early in meiosis." [PMID:1657709]	SO:0001858	"A promoter element with consensus sequence TTCTTTGTTY, bound an HMG-box transcription factor such as S. pombe Ste11, and found in promoters of genes up-regulated early in meiosis." [PMID:1657709]	46722	\N	\N	sequence	0	SO	TR_box	TR_box
SO:0001659	SO:0001858	\N	"" []	SO:0001858	"A promoter element with consensus sequence TTCTTTGTTY, bound an HMG-box transcription factor such as S. pombe Ste11, and found in promoters of genes up-regulated early in meiosis." [PMID:1657709]	491509	\N	\N	sequence	1	SO	promoter_element	TR_box
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001858	"A promoter element with consensus sequence TTCTTTGTTY, bound an HMG-box transcription factor such as S. pombe Ste11, and found in promoters of genes up-regulated early in meiosis." [PMID:1657709]	1074143	\N	\N	sequence	2	SO	DNA_motif	TR_box
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001858	"A promoter element with consensus sequence TTCTTTGTTY, bound an HMG-box transcription factor such as S. pombe Ste11, and found in promoters of genes up-regulated early in meiosis." [PMID:1657709]	1905277	\N	SOFA	sequence	3	SO	nucleotide_motif	TR_box
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001858	"A promoter element with consensus sequence TTCTTTGTTY, bound an HMG-box transcription factor such as S. pombe Ste11, and found in promoters of genes up-regulated early in meiosis." [PMID:1657709]	2929700	SOFA	SOFA	sequence	4	SO	sequence_motif	TR_box
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001858	"A promoter element with consensus sequence TTCTTTGTTY, bound an HMG-box transcription factor such as S. pombe Ste11, and found in promoters of genes up-regulated early in meiosis." [PMID:1657709]	4002772	SOFA	SOFA	sequence	5	SO	biological_region	TR_box
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001858	"A promoter element with consensus sequence TTCTTTGTTY, bound an HMG-box transcription factor such as S. pombe Ste11, and found in promoters of genes up-regulated early in meiosis." [PMID:1657709]	4966995	SOFA	SOFA	sequence	6	SO	region	TR_box
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001858	"A promoter element with consensus sequence TTCTTTGTTY, bound an HMG-box transcription factor such as S. pombe Ste11, and found in promoters of genes up-regulated early in meiosis." [PMID:1657709]	5741556	SOFA	SOFA	sequence	7	SO	sequence_feature	TR_box
SO:0001859	\N	\N	"A promoter element with consensus sequence CCCCTC, bound by the PKA-responsive zinc finger transcription factor Rst2." [PMID:11739717]	SO:0001859	"A promoter element with consensus sequence CCCCTC, bound by the PKA-responsive zinc finger transcription factor Rst2." [PMID:11739717]	46723	\N	\N	sequence	0	SO	STREP_motif	STREP_motif
SO:0001659	SO:0001859	\N	"" []	SO:0001859	"A promoter element with consensus sequence CCCCTC, bound by the PKA-responsive zinc finger transcription factor Rst2." [PMID:11739717]	491510	\N	\N	sequence	1	SO	promoter_element	STREP_motif
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001859	"A promoter element with consensus sequence CCCCTC, bound by the PKA-responsive zinc finger transcription factor Rst2." [PMID:11739717]	1074144	\N	\N	sequence	2	SO	DNA_motif	STREP_motif
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001859	"A promoter element with consensus sequence CCCCTC, bound by the PKA-responsive zinc finger transcription factor Rst2." [PMID:11739717]	1905278	\N	SOFA	sequence	3	SO	nucleotide_motif	STREP_motif
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001859	"A promoter element with consensus sequence CCCCTC, bound by the PKA-responsive zinc finger transcription factor Rst2." [PMID:11739717]	2929701	SOFA	SOFA	sequence	4	SO	sequence_motif	STREP_motif
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001859	"A promoter element with consensus sequence CCCCTC, bound by the PKA-responsive zinc finger transcription factor Rst2." [PMID:11739717]	4002773	SOFA	SOFA	sequence	5	SO	biological_region	STREP_motif
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001859	"A promoter element with consensus sequence CCCCTC, bound by the PKA-responsive zinc finger transcription factor Rst2." [PMID:11739717]	4966996	SOFA	SOFA	sequence	6	SO	region	STREP_motif
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001859	"A promoter element with consensus sequence CCCCTC, bound by the PKA-responsive zinc finger transcription factor Rst2." [PMID:11739717]	5741557	SOFA	SOFA	sequence	7	SO	sequence_feature	STREP_motif
SO:0001860	\N	\N	"A DNA motif that contains a core consensus sequence AGGTAAGGGTAATGCAC, is found in the intergenic regions of rDNA repeats, and is bound by an RNA polymerase I transcription termination factor (e.g. S. pombe Reb1)." [PMID:9016645]	SO:0001860	"A DNA motif that contains a core consensus sequence AGGTAAGGGTAATGCAC, is found in the intergenic regions of rDNA repeats, and is bound by an RNA polymerase I transcription termination factor (e.g. S. pombe Reb1)." [PMID:9016645]	46724	\N	\N	sequence	0	SO	rDNA_intergenic_spacer_element	rDNA_intergenic_spacer_element
SO:0000713	SO:0001860	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001860	"A DNA motif that contains a core consensus sequence AGGTAAGGGTAATGCAC, is found in the intergenic regions of rDNA repeats, and is bound by an RNA polymerase I transcription termination factor (e.g. S. pombe Reb1)." [PMID:9016645]	491511	\N	\N	sequence	1	SO	DNA_motif	rDNA_intergenic_spacer_element
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001860	"A DNA motif that contains a core consensus sequence AGGTAAGGGTAATGCAC, is found in the intergenic regions of rDNA repeats, and is bound by an RNA polymerase I transcription termination factor (e.g. S. pombe Reb1)." [PMID:9016645]	1074145	\N	SOFA	sequence	2	SO	nucleotide_motif	rDNA_intergenic_spacer_element
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001860	"A DNA motif that contains a core consensus sequence AGGTAAGGGTAATGCAC, is found in the intergenic regions of rDNA repeats, and is bound by an RNA polymerase I transcription termination factor (e.g. S. pombe Reb1)." [PMID:9016645]	1905279	SOFA	SOFA	sequence	3	SO	sequence_motif	rDNA_intergenic_spacer_element
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001860	"A DNA motif that contains a core consensus sequence AGGTAAGGGTAATGCAC, is found in the intergenic regions of rDNA repeats, and is bound by an RNA polymerase I transcription termination factor (e.g. S. pombe Reb1)." [PMID:9016645]	2929702	SOFA	SOFA	sequence	4	SO	biological_region	rDNA_intergenic_spacer_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001860	"A DNA motif that contains a core consensus sequence AGGTAAGGGTAATGCAC, is found in the intergenic regions of rDNA repeats, and is bound by an RNA polymerase I transcription termination factor (e.g. S. pombe Reb1)." [PMID:9016645]	4002774	SOFA	SOFA	sequence	5	SO	region	rDNA_intergenic_spacer_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001860	"A DNA motif that contains a core consensus sequence AGGTAAGGGTAATGCAC, is found in the intergenic regions of rDNA repeats, and is bound by an RNA polymerase I transcription termination factor (e.g. S. pombe Reb1)." [PMID:9016645]	4966997	SOFA	SOFA	sequence	6	SO	sequence_feature	rDNA_intergenic_spacer_element
SO:0001861	\N	\N	"A 10-bp promoter element bound by sterol regulatory element binding proteins (SREBPs), found in promoters of genes involved in sterol metabolism. Many variants of the sequence ATCACCCCAC function as SREs." [GO:mah, PMID:11111080, PMID:16537923]	SO:0001861	"A 10-bp promoter element bound by sterol regulatory element binding proteins (SREBPs), found in promoters of genes involved in sterol metabolism. Many variants of the sequence ATCACCCCAC function as SREs." [GO:mah, PMID:11111080, PMID:16537923]	46725	\N	\N	sequence	0	SO	sterol_regulatory_element	sterol_regulatory_element
SO:0001659	SO:0001861	\N	"" []	SO:0001861	"A 10-bp promoter element bound by sterol regulatory element binding proteins (SREBPs), found in promoters of genes involved in sterol metabolism. Many variants of the sequence ATCACCCCAC function as SREs." [GO:mah, PMID:11111080, PMID:16537923]	491512	\N	\N	sequence	1	SO	promoter_element	sterol_regulatory_element
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001861	"A 10-bp promoter element bound by sterol regulatory element binding proteins (SREBPs), found in promoters of genes involved in sterol metabolism. Many variants of the sequence ATCACCCCAC function as SREs." [GO:mah, PMID:11111080, PMID:16537923]	1074146	\N	\N	sequence	2	SO	DNA_motif	sterol_regulatory_element
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001861	"A 10-bp promoter element bound by sterol regulatory element binding proteins (SREBPs), found in promoters of genes involved in sterol metabolism. Many variants of the sequence ATCACCCCAC function as SREs." [GO:mah, PMID:11111080, PMID:16537923]	1905280	\N	SOFA	sequence	3	SO	nucleotide_motif	sterol_regulatory_element
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001861	"A 10-bp promoter element bound by sterol regulatory element binding proteins (SREBPs), found in promoters of genes involved in sterol metabolism. Many variants of the sequence ATCACCCCAC function as SREs." [GO:mah, PMID:11111080, PMID:16537923]	2929703	SOFA	SOFA	sequence	4	SO	sequence_motif	sterol_regulatory_element
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001861	"A 10-bp promoter element bound by sterol regulatory element binding proteins (SREBPs), found in promoters of genes involved in sterol metabolism. Many variants of the sequence ATCACCCCAC function as SREs." [GO:mah, PMID:11111080, PMID:16537923]	4002775	SOFA	SOFA	sequence	5	SO	biological_region	sterol_regulatory_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001861	"A 10-bp promoter element bound by sterol regulatory element binding proteins (SREBPs), found in promoters of genes involved in sterol metabolism. Many variants of the sequence ATCACCCCAC function as SREs." [GO:mah, PMID:11111080, PMID:16537923]	4966998	SOFA	SOFA	sequence	6	SO	region	sterol_regulatory_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001861	"A 10-bp promoter element bound by sterol regulatory element binding proteins (SREBPs), found in promoters of genes involved in sterol metabolism. Many variants of the sequence ATCACCCCAC function as SREs." [GO:mah, PMID:11111080, PMID:16537923]	5741558	SOFA	SOFA	sequence	7	SO	sequence_feature	sterol_regulatory_element
SO:0001862	\N	\N	"A dinucleotide repeat region composed of GT repeating elements." [SO:ke]	SO:0001862	"A dinucleotide repeat region composed of GT repeating elements." [SO:ke]	46726	\N	\N	sequence	0	SO	GT_dinucleotide_repeat	GT_dinucleotide_repeat
SO:0000290	SO:0001862	\N	"" []	SO:0001862	"A dinucleotide repeat region composed of GT repeating elements." [SO:ke]	491513	\N	\N	sequence	1	SO	dinucleotide_repeat_microsatellite_feature	GT_dinucleotide_repeat
SO:0000289	SO:0000290	\N	"A repeat_region containing repeat_units of 2 to 10 bp repeated in tandem." [http://www.informatics.jax.org/silver/glossary.shtml, NCBI:th]	SO:0001862	"A dinucleotide repeat region composed of GT repeating elements." [SO:ke]	1074147	\N	SOFA	sequence	2	SO	microsatellite	GT_dinucleotide_repeat
SO:0000005	SO:0000289	\N	"The many tandem repeats (identical or related) of a short basic repeating unit; many have a base composition or other property different from the genome average that allows them to be separated from the bulk (main band) genomic DNA." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001862	"A dinucleotide repeat region composed of GT repeating elements." [SO:ke]	1905281	SOFA	SOFA	sequence	3	SO	satellite_DNA	GT_dinucleotide_repeat
SO:0000705	SO:0000005	\N	"Two or more adjacent copies of a region (of length greater than 1)." [SO:ke]	SO:0001862	"A dinucleotide repeat region composed of GT repeating elements." [SO:ke]	2929704	SOFA	SOFA	sequence	4	SO	tandem_repeat	GT_dinucleotide_repeat
SO:0000657	SO:0000705	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0001862	"A dinucleotide repeat region composed of GT repeating elements." [SO:ke]	4002776	SOFA	SOFA	sequence	5	SO	repeat_region	GT_dinucleotide_repeat
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001862	"A dinucleotide repeat region composed of GT repeating elements." [SO:ke]	4966999	SOFA	SOFA	sequence	6	SO	biological_region	GT_dinucleotide_repeat
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001862	"A dinucleotide repeat region composed of GT repeating elements." [SO:ke]	5741559	SOFA	SOFA	sequence	7	SO	region	GT_dinucleotide_repeat
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001862	"A dinucleotide repeat region composed of GT repeating elements." [SO:ke]	6311252	SOFA	SOFA	sequence	8	SO	sequence_feature	GT_dinucleotide_repeat
SO:0001863	\N	\N	"A trinucleotide repeat region composed of GTT repeating elements." [SO:ke]	SO:0001863	"A trinucleotide repeat region composed of GTT repeating elements." [SO:ke]	46727	\N	\N	sequence	0	SO	GTT_trinucleotide_repeat	GTT_trinucleotide_repeat
SO:0000291	SO:0001863	\N	"" []	SO:0001863	"A trinucleotide repeat region composed of GTT repeating elements." [SO:ke]	491514	\N	\N	sequence	1	SO	trinucleotide_repeat_microsatellite_feature	GTT_trinucleotide_repeat
SO:0000289	SO:0000291	\N	"A repeat_region containing repeat_units of 2 to 10 bp repeated in tandem." [http://www.informatics.jax.org/silver/glossary.shtml, NCBI:th]	SO:0001863	"A trinucleotide repeat region composed of GTT repeating elements." [SO:ke]	1074148	\N	SOFA	sequence	2	SO	microsatellite	GTT_trinucleotide_repeat
SO:0000005	SO:0000289	\N	"The many tandem repeats (identical or related) of a short basic repeating unit; many have a base composition or other property different from the genome average that allows them to be separated from the bulk (main band) genomic DNA." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001863	"A trinucleotide repeat region composed of GTT repeating elements." [SO:ke]	1905282	SOFA	SOFA	sequence	3	SO	satellite_DNA	GTT_trinucleotide_repeat
SO:0000705	SO:0000005	\N	"Two or more adjacent copies of a region (of length greater than 1)." [SO:ke]	SO:0001863	"A trinucleotide repeat region composed of GTT repeating elements." [SO:ke]	2929705	SOFA	SOFA	sequence	4	SO	tandem_repeat	GTT_trinucleotide_repeat
SO:0000657	SO:0000705	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0001863	"A trinucleotide repeat region composed of GTT repeating elements." [SO:ke]	4002777	SOFA	SOFA	sequence	5	SO	repeat_region	GTT_trinucleotide_repeat
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001863	"A trinucleotide repeat region composed of GTT repeating elements." [SO:ke]	4967000	SOFA	SOFA	sequence	6	SO	biological_region	GTT_trinucleotide_repeat
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001863	"A trinucleotide repeat region composed of GTT repeating elements." [SO:ke]	5741560	SOFA	SOFA	sequence	7	SO	region	GTT_trinucleotide_repeat
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001863	"A trinucleotide repeat region composed of GTT repeating elements." [SO:ke]	6311253	SOFA	SOFA	sequence	8	SO	sequence_feature	GTT_trinucleotide_repeat
SO:0001864	\N	\N	"A DNA motif to which the S. pombe Sap1 protein binds. The consensus sequence is 5'-TARGCAGNTNYAACGMG-3'; it is found at the mating type locus, where it is important for mating type switching, and at replication fork barriers in rDNA repeats." [PMID:16166653, PMID:7651412]	SO:0001864	"A DNA motif to which the S. pombe Sap1 protein binds. The consensus sequence is 5'-TARGCAGNTNYAACGMG-3'; it is found at the mating type locus, where it is important for mating type switching, and at replication fork barriers in rDNA repeats." [PMID:16166653, PMID:7651412]	46728	\N	\N	sequence	0	SO	Sap1_recognition_motif	Sap1_recognition_motif
SO:0000713	SO:0001864	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001864	"A DNA motif to which the S. pombe Sap1 protein binds. The consensus sequence is 5'-TARGCAGNTNYAACGMG-3'; it is found at the mating type locus, where it is important for mating type switching, and at replication fork barriers in rDNA repeats." [PMID:16166653, PMID:7651412]	491515	\N	\N	sequence	1	SO	DNA_motif	Sap1_recognition_motif
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001864	"A DNA motif to which the S. pombe Sap1 protein binds. The consensus sequence is 5'-TARGCAGNTNYAACGMG-3'; it is found at the mating type locus, where it is important for mating type switching, and at replication fork barriers in rDNA repeats." [PMID:16166653, PMID:7651412]	1074149	\N	SOFA	sequence	2	SO	nucleotide_motif	Sap1_recognition_motif
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001864	"A DNA motif to which the S. pombe Sap1 protein binds. The consensus sequence is 5'-TARGCAGNTNYAACGMG-3'; it is found at the mating type locus, where it is important for mating type switching, and at replication fork barriers in rDNA repeats." [PMID:16166653, PMID:7651412]	1905283	SOFA	SOFA	sequence	3	SO	sequence_motif	Sap1_recognition_motif
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001864	"A DNA motif to which the S. pombe Sap1 protein binds. The consensus sequence is 5'-TARGCAGNTNYAACGMG-3'; it is found at the mating type locus, where it is important for mating type switching, and at replication fork barriers in rDNA repeats." [PMID:16166653, PMID:7651412]	2929706	SOFA	SOFA	sequence	4	SO	biological_region	Sap1_recognition_motif
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001864	"A DNA motif to which the S. pombe Sap1 protein binds. The consensus sequence is 5'-TARGCAGNTNYAACGMG-3'; it is found at the mating type locus, where it is important for mating type switching, and at replication fork barriers in rDNA repeats." [PMID:16166653, PMID:7651412]	4002778	SOFA	SOFA	sequence	5	SO	region	Sap1_recognition_motif
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001864	"A DNA motif to which the S. pombe Sap1 protein binds. The consensus sequence is 5'-TARGCAGNTNYAACGMG-3'; it is found at the mating type locus, where it is important for mating type switching, and at replication fork barriers in rDNA repeats." [PMID:16166653, PMID:7651412]	4967001	SOFA	SOFA	sequence	6	SO	sequence_feature	Sap1_recognition_motif
SO:0001865	\N	\N	"An RNA polymerase II promoter element found in the promoters of genes regulated by calcineurin. The consensus sequence is GNGGCKCA." [PMID:16928959]	SO:0001865	"An RNA polymerase II promoter element found in the promoters of genes regulated by calcineurin. The consensus sequence is GNGGCKCA." [PMID:16928959]	46729	\N	\N	sequence	0	SO	CDRE_motif	CDRE_motif
SO:0001659	SO:0001865	\N	"" []	SO:0001865	"An RNA polymerase II promoter element found in the promoters of genes regulated by calcineurin. The consensus sequence is GNGGCKCA." [PMID:16928959]	491516	\N	\N	sequence	1	SO	promoter_element	CDRE_motif
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001865	"An RNA polymerase II promoter element found in the promoters of genes regulated by calcineurin. The consensus sequence is GNGGCKCA." [PMID:16928959]	1074150	\N	\N	sequence	2	SO	DNA_motif	CDRE_motif
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001865	"An RNA polymerase II promoter element found in the promoters of genes regulated by calcineurin. The consensus sequence is GNGGCKCA." [PMID:16928959]	1905284	\N	SOFA	sequence	3	SO	nucleotide_motif	CDRE_motif
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001865	"An RNA polymerase II promoter element found in the promoters of genes regulated by calcineurin. The consensus sequence is GNGGCKCA." [PMID:16928959]	2929707	SOFA	SOFA	sequence	4	SO	sequence_motif	CDRE_motif
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001865	"An RNA polymerase II promoter element found in the promoters of genes regulated by calcineurin. The consensus sequence is GNGGCKCA." [PMID:16928959]	4002779	SOFA	SOFA	sequence	5	SO	biological_region	CDRE_motif
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001865	"An RNA polymerase II promoter element found in the promoters of genes regulated by calcineurin. The consensus sequence is GNGGCKCA." [PMID:16928959]	4967002	SOFA	SOFA	sequence	6	SO	region	CDRE_motif
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001865	"An RNA polymerase II promoter element found in the promoters of genes regulated by calcineurin. The consensus sequence is GNGGCKCA." [PMID:16928959]	5741561	SOFA	SOFA	sequence	7	SO	sequence_feature	CDRE_motif
SO:0001866	\N	\N	"A contig of BAC reads." [GMOD:ea]	SO:0001866	"A contig of BAC reads." [GMOD:ea]	46730	\N	\N	sequence	0	SO	BAC_read_contig	BAC_read_contig
SO:0000149	SO:0001866	\N	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	SO:0001866	"A contig of BAC reads." [GMOD:ea]	491517	\N	SOFA	sequence	1	SO	contig	BAC_read_contig
SO:0000153	SO:0001866	\N	"Bacterial Artificial Chromosome, a cloning vector that can be propagated as mini-chromosomes in a bacterial host." [SO:ma]	SO:0001866	"A contig of BAC reads." [GMOD:ea]	491518	\N	\N	sequence	1	SO	BAC	BAC_read_contig
SO:0000143	SO:0000149	\N	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0001866	"A contig of BAC reads." [GMOD:ea]	1074151	SOFA	SOFA	sequence	2	SO	assembly_component	BAC_read_contig
SO:0000148	SO:0000149	\N	"One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's." [SO:ls]	SO:0001866	"A contig of BAC reads." [GMOD:ea]	1074152	SOFA	SOFA	sequence	2	SO	supercontig	BAC_read_contig
SO:0000353	SO:0000149	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001866	"A contig of BAC reads." [GMOD:ea]	1074153	SOFA	SOFA	sequence	2	SO	sequence_assembly	BAC_read_contig
SO:0000440	SO:0000153	\N	"A replicon that has been modified to act as a vector for foreign sequence." [SO:ma]	SO:0001866	"A contig of BAC reads." [GMOD:ea]	1074154	\N	\N	sequence	2	SO	vector_replicon	BAC_read_contig
SO:0001410	SO:0000143	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001866	"A contig of BAC reads." [GMOD:ea]	1905285	SOFA	SOFA	sequence	3	SO	experimental_feature	BAC_read_contig
SO:0000719	SO:0000148	\N	"An ordered and oriented set of scaffolds based on somewhat weaker sets of inferential evidence such as one set of mate pair reads together with supporting evidence from ESTs or location of markers from SNP or microsatellite maps, or cytogenetic localization of contained markers." [FB:WG]	SO:0001866	"A contig of BAC reads." [GMOD:ea]	1905286	SOFA	SOFA	sequence	3	SO	ultracontig	BAC_read_contig
SO:0001876	SO:0000148	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001866	"A contig of BAC reads." [GMOD:ea]	1905287	SOFA	\N	sequence	3	SO	partial_genomic_sequence_assembly	BAC_read_contig
SO:0001248	SO:0000353	\N	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0001866	"A contig of BAC reads." [GMOD:ea]	4385872	SOFA	SOFA	sequence	6	SO	assembly	BAC_read_contig
SO:0000151	SO:0000440	\N	"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism." [SO:ke]	SO:0001866	"A contig of BAC reads." [GMOD:ea]	1905289	\N	SOFA	sequence	3	SO	clone	BAC_read_contig
SO:0001235	SO:0000440	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001866	"A contig of BAC reads." [GMOD:ea]	1905290	\N	SOFA	sequence	3	SO	replicon	BAC_read_contig
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001866	"A contig of BAC reads." [GMOD:ea]	5876464	SOFA	SOFA	sequence	8	SO	region	BAC_read_contig
SO:0001876	SO:0000719	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001866	"A contig of BAC reads." [GMOD:ea]	2929709	SOFA	\N	sequence	4	SO	partial_genomic_sequence_assembly	BAC_read_contig
SO:0000353	SO:0001876	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001866	"A contig of BAC reads." [GMOD:ea]	4002781	\N	SOFA	sequence	5	SO	sequence_assembly	BAC_read_contig
SO:0001410	SO:0001248	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001866	"A contig of BAC reads." [GMOD:ea]	5059251	SOFA	SOFA	sequence	7	SO	experimental_feature	BAC_read_contig
SO:0000695	SO:0000151	\N	"A sequence used in experiment." [SO:ke]	SO:0001866	"A contig of BAC reads." [GMOD:ea]	2929712	SOFA	SOFA	sequence	4	SO	reagent	BAC_read_contig
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001866	"A contig of BAC reads." [GMOD:ea]	2929713	SOFA	SOFA	sequence	4	SO	biological_region	BAC_read_contig
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001866	"A contig of BAC reads." [GMOD:ea]	6409721	SOFA	SOFA	sequence	9	SO	sequence_feature	BAC_read_contig
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001866	"A contig of BAC reads." [GMOD:ea]	4002784	SOFA	SOFA	sequence	5	SO	biomaterial_region	BAC_read_contig
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001866	"A contig of BAC reads." [GMOD:ea]	4002785	SOFA	SOFA	sequence	5	SO	region	BAC_read_contig
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001866	"A contig of BAC reads." [GMOD:ea]	4967003	SOFA	SOFA	sequence	6	SO	region	BAC_read_contig
SO:0001867	\N	\N	"A gene suspected of being involved in the expression of a trait." [GMOD:ea]	SO:0001867	"A gene suspected of being involved in the expression of a trait." [GMOD:ea]	46731	\N	\N	sequence	0	SO	candidate_gene	candidate_gene
SO:0000704	SO:0001867	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0001867	"A gene suspected of being involved in the expression of a trait." [GMOD:ea]	491519	\N	SOFA	sequence	1	SO	gene	candidate_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001867	"A gene suspected of being involved in the expression of a trait." [GMOD:ea]	1074155	SOFA	SOFA	sequence	2	SO	biological_region	candidate_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001867	"A gene suspected of being involved in the expression of a trait." [GMOD:ea]	1905291	SOFA	SOFA	sequence	3	SO	region	candidate_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001867	"A gene suspected of being involved in the expression of a trait." [GMOD:ea]	2929714	SOFA	SOFA	sequence	4	SO	sequence_feature	candidate_gene
SO:0001868	\N	\N	"A candidate gene whose association with a trait is based on the gene's location on a chromosome." [GMOD:ea]	SO:0001868	"A candidate gene whose association with a trait is based on the gene's location on a chromosome." [GMOD:ea]	46732	\N	\N	sequence	0	SO	positional_candidate_gene	positional_candidate_gene
SO:0001867	SO:0001868	\N	"A gene suspected of being involved in the expression of a trait." [GMOD:ea]	SO:0001868	"A candidate gene whose association with a trait is based on the gene's location on a chromosome." [GMOD:ea]	491520	\N	\N	sequence	1	SO	candidate_gene	positional_candidate_gene
SO:0000704	SO:0001867	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0001868	"A candidate gene whose association with a trait is based on the gene's location on a chromosome." [GMOD:ea]	1074156	\N	SOFA	sequence	2	SO	gene	positional_candidate_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001868	"A candidate gene whose association with a trait is based on the gene's location on a chromosome." [GMOD:ea]	1905292	SOFA	SOFA	sequence	3	SO	biological_region	positional_candidate_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001868	"A candidate gene whose association with a trait is based on the gene's location on a chromosome." [GMOD:ea]	2929715	SOFA	SOFA	sequence	4	SO	region	positional_candidate_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001868	"A candidate gene whose association with a trait is based on the gene's location on a chromosome." [GMOD:ea]	4002786	SOFA	SOFA	sequence	5	SO	sequence_feature	positional_candidate_gene
SO:0001869	\N	\N	"A candidate gene whose function has something in common biologically with the trait under investigation." [GMOD:ea]	SO:0001869	"A candidate gene whose function has something in common biologically with the trait under investigation." [GMOD:ea]	46733	\N	\N	sequence	0	SO	functional_candidate_gene	functional_candidate_gene
SO:0001867	SO:0001869	\N	"A gene suspected of being involved in the expression of a trait." [GMOD:ea]	SO:0001869	"A candidate gene whose function has something in common biologically with the trait under investigation." [GMOD:ea]	491521	\N	\N	sequence	1	SO	candidate_gene	functional_candidate_gene
SO:0000704	SO:0001867	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0001869	"A candidate gene whose function has something in common biologically with the trait under investigation." [GMOD:ea]	1074157	\N	SOFA	sequence	2	SO	gene	functional_candidate_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001869	"A candidate gene whose function has something in common biologically with the trait under investigation." [GMOD:ea]	1905293	SOFA	SOFA	sequence	3	SO	biological_region	functional_candidate_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001869	"A candidate gene whose function has something in common biologically with the trait under investigation." [GMOD:ea]	2929716	SOFA	SOFA	sequence	4	SO	region	functional_candidate_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001869	"A candidate gene whose function has something in common biologically with the trait under investigation." [GMOD:ea]	4002787	SOFA	SOFA	sequence	5	SO	sequence_feature	functional_candidate_gene
SO:0001870	\N	\N	"A short ncRNA that is transcribed from an enhancer. May have a regulatory function." [doi:10.1038/465173a, SO:cjm]	SO:0001870	"A short ncRNA that is transcribed from an enhancer. May have a regulatory function." [doi:10.1038/465173a, SO:cjm]	46734	\N	\N	sequence	0	SO	enhancerRNA	enhancerRNA
SO:0000655	SO:0001870	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0001870	"A short ncRNA that is transcribed from an enhancer. May have a regulatory function." [doi:10.1038/465173a, SO:cjm]	491522	\N	SOFA	sequence	1	SO	ncRNA	enhancerRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001870	"A short ncRNA that is transcribed from an enhancer. May have a regulatory function." [doi:10.1038/465173a, SO:cjm]	1074158	SOFA	SOFA	sequence	2	SO	mature_transcript	enhancerRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001870	"A short ncRNA that is transcribed from an enhancer. May have a regulatory function." [doi:10.1038/465173a, SO:cjm]	1905294	SOFA	SOFA	sequence	3	SO	transcript	enhancerRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001870	"A short ncRNA that is transcribed from an enhancer. May have a regulatory function." [doi:10.1038/465173a, SO:cjm]	2929717	SOFA	SOFA	sequence	4	SO	gene_member_region	enhancerRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001870	"A short ncRNA that is transcribed from an enhancer. May have a regulatory function." [doi:10.1038/465173a, SO:cjm]	4002788	SOFA	SOFA	sequence	5	SO	biological_region	enhancerRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001870	"A short ncRNA that is transcribed from an enhancer. May have a regulatory function." [doi:10.1038/465173a, SO:cjm]	4967004	SOFA	SOFA	sequence	6	SO	region	enhancerRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001870	"A short ncRNA that is transcribed from an enhancer. May have a regulatory function." [doi:10.1038/465173a, SO:cjm]	5741563	SOFA	SOFA	sequence	7	SO	sequence_feature	enhancerRNA
SO:0001871	\N	\N	"A promoter element with consensus sequence GNAACR, bound by the transcription factor complex PBF (PCB-binding factor) and found in promoters of genes expressed during the M/G1 transition of the cell cycle." [GO:mah, PMID:12411492]	SO:0001871	"A promoter element with consensus sequence GNAACR, bound by the transcription factor complex PBF (PCB-binding factor) and found in promoters of genes expressed during the M/G1 transition of the cell cycle." [GO:mah, PMID:12411492]	46735	\N	\N	sequence	0	SO	PCB	PCB
SO:0001659	SO:0001871	\N	"" []	SO:0001871	"A promoter element with consensus sequence GNAACR, bound by the transcription factor complex PBF (PCB-binding factor) and found in promoters of genes expressed during the M/G1 transition of the cell cycle." [GO:mah, PMID:12411492]	491523	\N	\N	sequence	1	SO	promoter_element	PCB
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001871	"A promoter element with consensus sequence GNAACR, bound by the transcription factor complex PBF (PCB-binding factor) and found in promoters of genes expressed during the M/G1 transition of the cell cycle." [GO:mah, PMID:12411492]	1074159	\N	\N	sequence	2	SO	DNA_motif	PCB
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001871	"A promoter element with consensus sequence GNAACR, bound by the transcription factor complex PBF (PCB-binding factor) and found in promoters of genes expressed during the M/G1 transition of the cell cycle." [GO:mah, PMID:12411492]	1905295	\N	SOFA	sequence	3	SO	nucleotide_motif	PCB
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001871	"A promoter element with consensus sequence GNAACR, bound by the transcription factor complex PBF (PCB-binding factor) and found in promoters of genes expressed during the M/G1 transition of the cell cycle." [GO:mah, PMID:12411492]	2929718	SOFA	SOFA	sequence	4	SO	sequence_motif	PCB
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001871	"A promoter element with consensus sequence GNAACR, bound by the transcription factor complex PBF (PCB-binding factor) and found in promoters of genes expressed during the M/G1 transition of the cell cycle." [GO:mah, PMID:12411492]	4002789	SOFA	SOFA	sequence	5	SO	biological_region	PCB
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001871	"A promoter element with consensus sequence GNAACR, bound by the transcription factor complex PBF (PCB-binding factor) and found in promoters of genes expressed during the M/G1 transition of the cell cycle." [GO:mah, PMID:12411492]	4967005	SOFA	SOFA	sequence	6	SO	region	PCB
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001871	"A promoter element with consensus sequence GNAACR, bound by the transcription factor complex PBF (PCB-binding factor) and found in promoters of genes expressed during the M/G1 transition of the cell cycle." [GO:mah, PMID:12411492]	5741564	SOFA	SOFA	sequence	7	SO	sequence_feature	PCB
SO:0001872	\N	\N	"A region of a chromosome, where the chromosome has undergone a large structural rearrangement that altered the genome organization. There is no longer synteny to the reference genome." [NCBI:th, PMID:18564416]	SO:0001872	"A region of a chromosome, where the chromosome has undergone a large structural rearrangement that altered the genome organization. There is no longer synteny to the reference genome." [NCBI:th, PMID:18564416]	46736	\N	\N	sequence	0	SO	rearrangement_region	rearrangement_region
SO:0001411	SO:0001872	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001872	"A region of a chromosome, where the chromosome has undergone a large structural rearrangement that altered the genome organization. There is no longer synteny to the reference genome." [NCBI:th, PMID:18564416]	491524	\N	SOFA	sequence	1	SO	biological_region	rearrangement_region
SO:0001785	SO:0001872	\N	"" []	SO:0001872	"A region of a chromosome, where the chromosome has undergone a large structural rearrangement that altered the genome organization. There is no longer synteny to the reference genome." [NCBI:th, PMID:18564416]	491525	\N	DBVAR	sequence	1	SO	structural_alteration	rearrangement_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001872	"A region of a chromosome, where the chromosome has undergone a large structural rearrangement that altered the genome organization. There is no longer synteny to the reference genome." [NCBI:th, PMID:18564416]	1074160	SOFA	SOFA	sequence	2	SO	region	rearrangement_region
SO:0001059	SO:0001785	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0001872	"A region of a chromosome, where the chromosome has undergone a large structural rearrangement that altered the genome organization. There is no longer synteny to the reference genome." [NCBI:th, PMID:18564416]	1074161	DBVAR	SOFA	sequence	2	SO	sequence_alteration	rearrangement_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001872	"A region of a chromosome, where the chromosome has undergone a large structural rearrangement that altered the genome organization. There is no longer synteny to the reference genome." [NCBI:th, PMID:18564416]	1905296	SOFA	SOFA	sequence	3	SO	sequence_feature	rearrangement_region
SO:0002072	SO:0001059	\N	"" []	SO:0001872	"A region of a chromosome, where the chromosome has undergone a large structural rearrangement that altered the genome organization. There is no longer synteny to the reference genome." [NCBI:th, PMID:18564416]	1905297	SOFA	\N	sequence	3	SO	sequence_comparison	rearrangement_region
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001872	"A region of a chromosome, where the chromosome has undergone a large structural rearrangement that altered the genome organization. There is no longer synteny to the reference genome." [NCBI:th, PMID:18564416]	2929719	\N	SOFA	sequence	4	SO	sequence_feature	rearrangement_region
SO:0001873	\N	\N	"A rearrangement breakpoint between two different chromosomes." [NCBI:th]	SO:0001873	"A rearrangement breakpoint between two different chromosomes." [NCBI:th]	46737	\N	\N	sequence	0	SO	interchromosomal_breakpoint	interchromosomal_breakpoint
SO:0001021	SO:0001873	\N	"" []	SO:0001873	"A rearrangement breakpoint between two different chromosomes." [NCBI:th]	491526	\N	\N	sequence	1	SO	chromosome_breakpoint	interchromosomal_breakpoint
SO:0000340	SO:0001021	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0001873	"A rearrangement breakpoint between two different chromosomes." [NCBI:th]	1074162	\N	SOFA	sequence	2	SO	chromosome	interchromosomal_breakpoint
SO:0000699	SO:0001021	\N	"A sequence_feature with an extent of zero." [SO:ke]	SO:0001873	"A rearrangement breakpoint between two different chromosomes." [NCBI:th]	1074163	\N	SOFA	sequence	2	SO	junction	interchromosomal_breakpoint
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001873	"A rearrangement breakpoint between two different chromosomes." [NCBI:th]	1905298	SOFA	SOFA	sequence	3	SO	replicon	interchromosomal_breakpoint
SO:0000110	SO:0000699	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001873	"A rearrangement breakpoint between two different chromosomes." [NCBI:th]	1905299	SOFA	SOFA	sequence	3	SO	sequence_feature	interchromosomal_breakpoint
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001873	"A rearrangement breakpoint between two different chromosomes." [NCBI:th]	2929720	SOFA	SOFA	sequence	4	SO	biological_region	interchromosomal_breakpoint
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001873	"A rearrangement breakpoint between two different chromosomes." [NCBI:th]	4002790	SOFA	SOFA	sequence	5	SO	region	interchromosomal_breakpoint
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001873	"A rearrangement breakpoint between two different chromosomes." [NCBI:th]	4967006	SOFA	SOFA	sequence	6	SO	sequence_feature	interchromosomal_breakpoint
SO:0001874	\N	\N	"A rearrangement breakpoint within the same chromosome." [NCBI:th]	SO:0001874	"A rearrangement breakpoint within the same chromosome." [NCBI:th]	46738	\N	\N	sequence	0	SO	intrachromosomal_breakpoint	intrachromosomal_breakpoint
SO:0001021	SO:0001874	\N	"" []	SO:0001874	"A rearrangement breakpoint within the same chromosome." [NCBI:th]	491527	\N	\N	sequence	1	SO	chromosome_breakpoint	intrachromosomal_breakpoint
SO:0000340	SO:0001021	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0001874	"A rearrangement breakpoint within the same chromosome." [NCBI:th]	1074164	\N	SOFA	sequence	2	SO	chromosome	intrachromosomal_breakpoint
SO:0000699	SO:0001021	\N	"A sequence_feature with an extent of zero." [SO:ke]	SO:0001874	"A rearrangement breakpoint within the same chromosome." [NCBI:th]	1074165	\N	SOFA	sequence	2	SO	junction	intrachromosomal_breakpoint
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001874	"A rearrangement breakpoint within the same chromosome." [NCBI:th]	1905300	SOFA	SOFA	sequence	3	SO	replicon	intrachromosomal_breakpoint
SO:0000110	SO:0000699	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001874	"A rearrangement breakpoint within the same chromosome." [NCBI:th]	1905301	SOFA	SOFA	sequence	3	SO	sequence_feature	intrachromosomal_breakpoint
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001874	"A rearrangement breakpoint within the same chromosome." [NCBI:th]	2929721	SOFA	SOFA	sequence	4	SO	biological_region	intrachromosomal_breakpoint
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001874	"A rearrangement breakpoint within the same chromosome." [NCBI:th]	4002791	SOFA	SOFA	sequence	5	SO	region	intrachromosomal_breakpoint
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001874	"A rearrangement breakpoint within the same chromosome." [NCBI:th]	4967007	SOFA	SOFA	sequence	6	SO	sequence_feature	intrachromosomal_breakpoint
SO:0001875	\N	\N	"A supercontig that is not been assigned to any ultracontig during a genome assembly project." [GMOD:ea]	SO:0001875	"A supercontig that is not been assigned to any ultracontig during a genome assembly project." [GMOD:ea]	46739	\N	\N	sequence	0	SO	unassigned_supercontig	unassigned_supercontig
SO:0000148	SO:0001875	\N	"One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's." [SO:ls]	SO:0001875	"A supercontig that is not been assigned to any ultracontig during a genome assembly project." [GMOD:ea]	491528	\N	SOFA	sequence	1	SO	supercontig	unassigned_supercontig
SO:0000719	SO:0000148	\N	"An ordered and oriented set of scaffolds based on somewhat weaker sets of inferential evidence such as one set of mate pair reads together with supporting evidence from ESTs or location of markers from SNP or microsatellite maps, or cytogenetic localization of contained markers." [FB:WG]	SO:0001875	"A supercontig that is not been assigned to any ultracontig during a genome assembly project." [GMOD:ea]	1074166	SOFA	SOFA	sequence	2	SO	ultracontig	unassigned_supercontig
SO:0001876	SO:0000148	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001875	"A supercontig that is not been assigned to any ultracontig during a genome assembly project." [GMOD:ea]	1074167	SOFA	\N	sequence	2	SO	partial_genomic_sequence_assembly	unassigned_supercontig
SO:0001876	SO:0000719	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001875	"A supercontig that is not been assigned to any ultracontig during a genome assembly project." [GMOD:ea]	1905302	SOFA	\N	sequence	3	SO	partial_genomic_sequence_assembly	unassigned_supercontig
SO:0000353	SO:0001876	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001875	"A supercontig that is not been assigned to any ultracontig during a genome assembly project." [GMOD:ea]	2929722	\N	SOFA	sequence	4	SO	sequence_assembly	unassigned_supercontig
SO:0001248	SO:0000353	\N	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0001875	"A supercontig that is not been assigned to any ultracontig during a genome assembly project." [GMOD:ea]	3174008	SOFA	SOFA	sequence	5	SO	assembly	unassigned_supercontig
SO:0001410	SO:0001248	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001875	"A supercontig that is not been assigned to any ultracontig during a genome assembly project." [GMOD:ea]	4385873	SOFA	SOFA	sequence	6	SO	experimental_feature	unassigned_supercontig
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001875	"A supercontig that is not been assigned to any ultracontig during a genome assembly project." [GMOD:ea]	5407490	SOFA	SOFA	sequence	7	SO	region	unassigned_supercontig
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001875	"A supercontig that is not been assigned to any ultracontig during a genome assembly project." [GMOD:ea]	6146683	SOFA	SOFA	sequence	8	SO	sequence_feature	unassigned_supercontig
SO:0001876	\N	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001876	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	46740	\N	\N	sequence	0	SO	partial_genomic_sequence_assembly	partial_genomic_sequence_assembly
SO:0000353	SO:0001876	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001876	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	491529	\N	SOFA	sequence	1	SO	sequence_assembly	partial_genomic_sequence_assembly
SO:0001248	SO:0000353	\N	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0001876	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	1074168	SOFA	SOFA	sequence	2	SO	assembly	partial_genomic_sequence_assembly
SO:0001410	SO:0001248	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001876	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	1905304	SOFA	SOFA	sequence	3	SO	experimental_feature	partial_genomic_sequence_assembly
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001876	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	2929724	SOFA	SOFA	sequence	4	SO	region	partial_genomic_sequence_assembly
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001876	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	4002793	SOFA	SOFA	sequence	5	SO	sequence_feature	partial_genomic_sequence_assembly
SO:0001877	\N	\N	"A non-coding RNA over 200nucleotides in length." [HGNC:mw]	SO:0001877	"A non-coding RNA over 200nucleotides in length." [HGNC:mw]	46741	\N	\N	sequence	0	SO	lnc_RNA	lnc_RNA
SO:0000655	SO:0001877	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0001877	"A non-coding RNA over 200nucleotides in length." [HGNC:mw]	491530	\N	SOFA	sequence	1	SO	ncRNA	lnc_RNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001877	"A non-coding RNA over 200nucleotides in length." [HGNC:mw]	1074169	SOFA	SOFA	sequence	2	SO	mature_transcript	lnc_RNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001877	"A non-coding RNA over 200nucleotides in length." [HGNC:mw]	1905305	SOFA	SOFA	sequence	3	SO	transcript	lnc_RNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001877	"A non-coding RNA over 200nucleotides in length." [HGNC:mw]	2929725	SOFA	SOFA	sequence	4	SO	gene_member_region	lnc_RNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001877	"A non-coding RNA over 200nucleotides in length." [HGNC:mw]	4002794	SOFA	SOFA	sequence	5	SO	biological_region	lnc_RNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001877	"A non-coding RNA over 200nucleotides in length." [HGNC:mw]	4967009	SOFA	SOFA	sequence	6	SO	region	lnc_RNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001877	"A non-coding RNA over 200nucleotides in length." [HGNC:mw]	5741566	SOFA	SOFA	sequence	7	SO	sequence_feature	lnc_RNA
SO:0001878	\N	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001878	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	46742	\N	\N	sequence	0	SO	feature_variant	feature_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001878	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	491531	\N	\N	sequence	1	SO	structural_variant	feature_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001878	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	1074170	\N	\N	sequence	2	SO	sequence_variant	feature_variant
SO:0001879	\N	\N	"A sequence variant, caused by an alteration of the genomic sequence, where the deletion, is greater than the extent of the underlying genomic features." [SO:ke]	SO:0001879	"A sequence variant, caused by an alteration of the genomic sequence, where the deletion, is greater than the extent of the underlying genomic features." [SO:ke]	46743	\N	\N	sequence	0	SO	feature_ablation	feature_ablation
SO:0001537	SO:0001879	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001879	"A sequence variant, caused by an alteration of the genomic sequence, where the deletion, is greater than the extent of the underlying genomic features." [SO:ke]	491532	\N	\N	sequence	1	SO	structural_variant	feature_ablation
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001879	"A sequence variant, caused by an alteration of the genomic sequence, where the deletion, is greater than the extent of the underlying genomic features." [SO:ke]	1074171	\N	\N	sequence	2	SO	sequence_variant	feature_ablation
SO:0001880	\N	\N	"A sequence variant, caused by an alteration of the genomic sequence, where the structural change, an amplification of sequence, is greater than the extent of the underlying genomic features." [SO:ke]	SO:0001880	"A sequence variant, caused by an alteration of the genomic sequence, where the structural change, an amplification of sequence, is greater than the extent of the underlying genomic features." [SO:ke]	46744	\N	\N	sequence	0	SO	feature_amplification	feature_amplification
SO:0001537	SO:0001880	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001880	"A sequence variant, caused by an alteration of the genomic sequence, where the structural change, an amplification of sequence, is greater than the extent of the underlying genomic features." [SO:ke]	491533	\N	\N	sequence	1	SO	structural_variant	feature_amplification
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001880	"A sequence variant, caused by an alteration of the genomic sequence, where the structural change, an amplification of sequence, is greater than the extent of the underlying genomic features." [SO:ke]	1074172	\N	\N	sequence	2	SO	sequence_variant	feature_amplification
SO:0001881	\N	\N	"A sequence variant, caused by an alteration of the genomic sequence, where the structural change, a translocation, is greater than the extent of the underlying genomic features." [SO:ke]	SO:0001881	"A sequence variant, caused by an alteration of the genomic sequence, where the structural change, a translocation, is greater than the extent of the underlying genomic features." [SO:ke]	46745	\N	\N	sequence	0	SO	feature_translocation	feature_translocation
SO:0001537	SO:0001881	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001881	"A sequence variant, caused by an alteration of the genomic sequence, where the structural change, a translocation, is greater than the extent of the underlying genomic features." [SO:ke]	491534	\N	\N	sequence	1	SO	structural_variant	feature_translocation
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001881	"A sequence variant, caused by an alteration of the genomic sequence, where the structural change, a translocation, is greater than the extent of the underlying genomic features." [SO:ke]	1074173	\N	\N	sequence	2	SO	sequence_variant	feature_translocation
SO:0001882	\N	\N	"A sequence variant, caused by an alteration of the genomic sequence, where a deletion fuses genomic features." [SO:ke]	SO:0001882	"A sequence variant, caused by an alteration of the genomic sequence, where a deletion fuses genomic features." [SO:ke]	46746	\N	\N	sequence	0	SO	feature_fusion	feature_fusion
SO:0001537	SO:0001882	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001882	"A sequence variant, caused by an alteration of the genomic sequence, where a deletion fuses genomic features." [SO:ke]	491535	\N	\N	sequence	1	SO	structural_variant	feature_fusion
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001882	"A sequence variant, caused by an alteration of the genomic sequence, where a deletion fuses genomic features." [SO:ke]	1074174	\N	\N	sequence	2	SO	sequence_variant	feature_fusion
SO:0001883	\N	\N	"A feature translocation where the region contains a transcript." [SO:ke]	SO:0001883	"A feature translocation where the region contains a transcript." [SO:ke]	46747	\N	\N	sequence	0	SO	transcript_translocation	transcript_translocation
SO:0001881	SO:0001883	\N	"A sequence variant, caused by an alteration of the genomic sequence, where the structural change, a translocation, is greater than the extent of the underlying genomic features." [SO:ke]	SO:0001883	"A feature translocation where the region contains a transcript." [SO:ke]	491536	\N	\N	sequence	1	SO	feature_translocation	transcript_translocation
SO:0001537	SO:0001881	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001883	"A feature translocation where the region contains a transcript." [SO:ke]	1074175	\N	\N	sequence	2	SO	structural_variant	transcript_translocation
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001883	"A feature translocation where the region contains a transcript." [SO:ke]	1905306	\N	\N	sequence	3	SO	sequence_variant	transcript_translocation
SO:0001884	\N	\N	"A feature translocation where the region contains a regulatory region." [SO:ke]	SO:0001884	"A feature translocation where the region contains a regulatory region." [SO:ke]	46748	\N	\N	sequence	0	SO	regulatory_region_translocation	regulatory_region_translocation
SO:0001881	SO:0001884	\N	"A sequence variant, caused by an alteration of the genomic sequence, where the structural change, a translocation, is greater than the extent of the underlying genomic features." [SO:ke]	SO:0001884	"A feature translocation where the region contains a regulatory region." [SO:ke]	491537	\N	\N	sequence	1	SO	feature_translocation	regulatory_region_translocation
SO:0001537	SO:0001881	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001884	"A feature translocation where the region contains a regulatory region." [SO:ke]	1074176	\N	\N	sequence	2	SO	structural_variant	regulatory_region_translocation
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001884	"A feature translocation where the region contains a regulatory region." [SO:ke]	1905307	\N	\N	sequence	3	SO	sequence_variant	regulatory_region_translocation
SO:0001885	\N	\N	"A feature translocation where the region contains a transcription factor binding site." [SO:ke]	SO:0001885	"A feature translocation where the region contains a transcription factor binding site." [SO:ke]	46749	\N	\N	sequence	0	SO	TFBS_translocation	TFBS_translocation
SO:0001884	SO:0001885	\N	"A feature translocation where the region contains a regulatory region." [SO:ke]	SO:0001885	"A feature translocation where the region contains a transcription factor binding site." [SO:ke]	491538	\N	\N	sequence	1	SO	regulatory_region_translocation	TFBS_translocation
SO:0001881	SO:0001884	\N	"A sequence variant, caused by an alteration of the genomic sequence, where the structural change, a translocation, is greater than the extent of the underlying genomic features." [SO:ke]	SO:0001885	"A feature translocation where the region contains a transcription factor binding site." [SO:ke]	1074177	\N	\N	sequence	2	SO	feature_translocation	TFBS_translocation
SO:0001537	SO:0001881	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001885	"A feature translocation where the region contains a transcription factor binding site." [SO:ke]	1905308	\N	\N	sequence	3	SO	structural_variant	TFBS_translocation
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001885	"A feature translocation where the region contains a transcription factor binding site." [SO:ke]	2929726	\N	\N	sequence	4	SO	sequence_variant	TFBS_translocation
SO:0001886	\N	\N	"A feature fusion where the deletion brings together transcript regions." [SO:ke]	SO:0001886	"A feature fusion where the deletion brings together transcript regions." [SO:ke]	46750	\N	\N	sequence	0	SO	transcript_fusion	transcript_fusion
SO:0001882	SO:0001886	\N	"A sequence variant, caused by an alteration of the genomic sequence, where a deletion fuses genomic features." [SO:ke]	SO:0001886	"A feature fusion where the deletion brings together transcript regions." [SO:ke]	491539	\N	\N	sequence	1	SO	feature_fusion	transcript_fusion
SO:0001537	SO:0001882	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001886	"A feature fusion where the deletion brings together transcript regions." [SO:ke]	1074178	\N	\N	sequence	2	SO	structural_variant	transcript_fusion
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001886	"A feature fusion where the deletion brings together transcript regions." [SO:ke]	1905309	\N	\N	sequence	3	SO	sequence_variant	transcript_fusion
SO:0001887	\N	\N	"A feature fusion where the deletion brings together regulatory regions." [SO:ke]	SO:0001887	"A feature fusion where the deletion brings together regulatory regions." [SO:ke]	46751	\N	\N	sequence	0	SO	regulatory_region_fusion	regulatory_region_fusion
SO:0001882	SO:0001887	\N	"A sequence variant, caused by an alteration of the genomic sequence, where a deletion fuses genomic features." [SO:ke]	SO:0001887	"A feature fusion where the deletion brings together regulatory regions." [SO:ke]	491540	\N	\N	sequence	1	SO	feature_fusion	regulatory_region_fusion
SO:0001537	SO:0001882	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001887	"A feature fusion where the deletion brings together regulatory regions." [SO:ke]	1074179	\N	\N	sequence	2	SO	structural_variant	regulatory_region_fusion
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001887	"A feature fusion where the deletion brings together regulatory regions." [SO:ke]	1905310	\N	\N	sequence	3	SO	sequence_variant	regulatory_region_fusion
SO:0001888	\N	\N	"A fusion where the deletion brings together transcription factor binding sites." [SO:ke]	SO:0001888	"A fusion where the deletion brings together transcription factor binding sites." [SO:ke]	46752	\N	\N	sequence	0	SO	TFBS_fusion	TFBS_fusion
SO:0001887	SO:0001888	\N	"A feature fusion where the deletion brings together regulatory regions." [SO:ke]	SO:0001888	"A fusion where the deletion brings together transcription factor binding sites." [SO:ke]	491541	\N	\N	sequence	1	SO	regulatory_region_fusion	TFBS_fusion
SO:0001882	SO:0001887	\N	"A sequence variant, caused by an alteration of the genomic sequence, where a deletion fuses genomic features." [SO:ke]	SO:0001888	"A fusion where the deletion brings together transcription factor binding sites." [SO:ke]	1074180	\N	\N	sequence	2	SO	feature_fusion	TFBS_fusion
SO:0001537	SO:0001882	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001888	"A fusion where the deletion brings together transcription factor binding sites." [SO:ke]	1905311	\N	\N	sequence	3	SO	structural_variant	TFBS_fusion
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001888	"A fusion where the deletion brings together transcription factor binding sites." [SO:ke]	2929727	\N	\N	sequence	4	SO	sequence_variant	TFBS_fusion
SO:0001889	\N	\N	"A feature amplification of a region containing a transcript." [SO:ke]	SO:0001889	"A feature amplification of a region containing a transcript." [SO:ke]	46753	\N	\N	sequence	0	SO	transcript_amplification	transcript_amplification
SO:0001880	SO:0001889	\N	"A sequence variant, caused by an alteration of the genomic sequence, where the structural change, an amplification of sequence, is greater than the extent of the underlying genomic features." [SO:ke]	SO:0001889	"A feature amplification of a region containing a transcript." [SO:ke]	491542	\N	\N	sequence	1	SO	feature_amplification	transcript_amplification
SO:0001537	SO:0001880	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001889	"A feature amplification of a region containing a transcript." [SO:ke]	1074181	\N	\N	sequence	2	SO	structural_variant	transcript_amplification
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001889	"A feature amplification of a region containing a transcript." [SO:ke]	1905312	\N	\N	sequence	3	SO	sequence_variant	transcript_amplification
SO:0001890	\N	\N	"A feature fusion where the deletion brings together a regulatory region and a transcript region." [SO:ke]	SO:0001890	"A feature fusion where the deletion brings together a regulatory region and a transcript region." [SO:ke]	46754	\N	\N	sequence	0	SO	transcript_regulatory_region_fusion	transcript_regulatory_region_fusion
SO:0001882	SO:0001890	\N	"A sequence variant, caused by an alteration of the genomic sequence, where a deletion fuses genomic features." [SO:ke]	SO:0001890	"A feature fusion where the deletion brings together a regulatory region and a transcript region." [SO:ke]	491543	\N	\N	sequence	1	SO	feature_fusion	transcript_regulatory_region_fusion
SO:0001537	SO:0001882	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001890	"A feature fusion where the deletion brings together a regulatory region and a transcript region." [SO:ke]	1074182	\N	\N	sequence	2	SO	structural_variant	transcript_regulatory_region_fusion
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001890	"A feature fusion where the deletion brings together a regulatory region and a transcript region." [SO:ke]	1905313	\N	\N	sequence	3	SO	sequence_variant	transcript_regulatory_region_fusion
SO:0001891	\N	\N	"A feature amplification of a region containing a regulatory region." [SO:ke]	SO:0001891	"A feature amplification of a region containing a regulatory region." [SO:ke]	46755	\N	\N	sequence	0	SO	regulatory_region_amplification	regulatory_region_amplification
SO:0001880	SO:0001891	\N	"A sequence variant, caused by an alteration of the genomic sequence, where the structural change, an amplification of sequence, is greater than the extent of the underlying genomic features." [SO:ke]	SO:0001891	"A feature amplification of a region containing a regulatory region." [SO:ke]	491544	\N	\N	sequence	1	SO	feature_amplification	regulatory_region_amplification
SO:0001537	SO:0001880	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001891	"A feature amplification of a region containing a regulatory region." [SO:ke]	1074183	\N	\N	sequence	2	SO	structural_variant	regulatory_region_amplification
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001891	"A feature amplification of a region containing a regulatory region." [SO:ke]	1905314	\N	\N	sequence	3	SO	sequence_variant	regulatory_region_amplification
SO:0001892	\N	\N	"A feature amplification of a region containing a transcription factor binding site." [SO:ke]	SO:0001892	"A feature amplification of a region containing a transcription factor binding site." [SO:ke]	46756	\N	\N	sequence	0	SO	TFBS_amplification	TFBS_amplification
SO:0001891	SO:0001892	\N	"A feature amplification of a region containing a regulatory region." [SO:ke]	SO:0001892	"A feature amplification of a region containing a transcription factor binding site." [SO:ke]	491545	\N	\N	sequence	1	SO	regulatory_region_amplification	TFBS_amplification
SO:0001880	SO:0001891	\N	"A sequence variant, caused by an alteration of the genomic sequence, where the structural change, an amplification of sequence, is greater than the extent of the underlying genomic features." [SO:ke]	SO:0001892	"A feature amplification of a region containing a transcription factor binding site." [SO:ke]	1074184	\N	\N	sequence	2	SO	feature_amplification	TFBS_amplification
SO:0001537	SO:0001880	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001892	"A feature amplification of a region containing a transcription factor binding site." [SO:ke]	1905315	\N	\N	sequence	3	SO	structural_variant	TFBS_amplification
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001892	"A feature amplification of a region containing a transcription factor binding site." [SO:ke]	2929728	\N	\N	sequence	4	SO	sequence_variant	TFBS_amplification
SO:0001893	\N	\N	"A feature ablation whereby the deleted region includes a transcript feature." [SO:ke]	SO:0001893	"A feature ablation whereby the deleted region includes a transcript feature." [SO:ke]	46757	\N	\N	sequence	0	SO	transcript_ablation	transcript_ablation
SO:0001879	SO:0001893	\N	"A sequence variant, caused by an alteration of the genomic sequence, where the deletion, is greater than the extent of the underlying genomic features." [SO:ke]	SO:0001893	"A feature ablation whereby the deleted region includes a transcript feature." [SO:ke]	491546	\N	\N	sequence	1	SO	feature_ablation	transcript_ablation
SO:0001537	SO:0001879	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001893	"A feature ablation whereby the deleted region includes a transcript feature." [SO:ke]	1074185	\N	\N	sequence	2	SO	structural_variant	transcript_ablation
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001893	"A feature ablation whereby the deleted region includes a transcript feature." [SO:ke]	1905316	\N	\N	sequence	3	SO	sequence_variant	transcript_ablation
SO:0001894	\N	\N	"A feature ablation whereby the deleted region includes a regulatory region." [SO:ke]	SO:0001894	"A feature ablation whereby the deleted region includes a regulatory region." [SO:ke]	46758	\N	\N	sequence	0	SO	regulatory_region_ablation	regulatory_region_ablation
SO:0001879	SO:0001894	\N	"A sequence variant, caused by an alteration of the genomic sequence, where the deletion, is greater than the extent of the underlying genomic features." [SO:ke]	SO:0001894	"A feature ablation whereby the deleted region includes a regulatory region." [SO:ke]	491547	\N	\N	sequence	1	SO	feature_ablation	regulatory_region_ablation
SO:0001537	SO:0001879	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001894	"A feature ablation whereby the deleted region includes a regulatory region." [SO:ke]	1074186	\N	\N	sequence	2	SO	structural_variant	regulatory_region_ablation
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001894	"A feature ablation whereby the deleted region includes a regulatory region." [SO:ke]	1905317	\N	\N	sequence	3	SO	sequence_variant	regulatory_region_ablation
SO:0001895	\N	\N	"A feature ablation whereby the deleted region includes a transcription factor binding site." [SO:ke]	SO:0001895	"A feature ablation whereby the deleted region includes a transcription factor binding site." [SO:ke]	46759	\N	\N	sequence	0	SO	TFBS_ablation	TFBS_ablation
SO:0001894	SO:0001895	\N	"A feature ablation whereby the deleted region includes a regulatory region." [SO:ke]	SO:0001895	"A feature ablation whereby the deleted region includes a transcription factor binding site." [SO:ke]	491548	\N	\N	sequence	1	SO	regulatory_region_ablation	TFBS_ablation
SO:0001879	SO:0001894	\N	"A sequence variant, caused by an alteration of the genomic sequence, where the deletion, is greater than the extent of the underlying genomic features." [SO:ke]	SO:0001895	"A feature ablation whereby the deleted region includes a transcription factor binding site." [SO:ke]	1074187	\N	\N	sequence	2	SO	feature_ablation	TFBS_ablation
SO:0001537	SO:0001879	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001895	"A feature ablation whereby the deleted region includes a transcription factor binding site." [SO:ke]	1905318	\N	\N	sequence	3	SO	structural_variant	TFBS_ablation
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001895	"A feature ablation whereby the deleted region includes a transcription factor binding site." [SO:ke]	2929729	\N	\N	sequence	4	SO	sequence_variant	TFBS_ablation
SO:0001896	\N	\N	"A CDS that is part of a transposable element." [SO:ke]	SO:0001896	"A CDS that is part of a transposable element." [SO:ke]	46760	\N	\N	sequence	0	SO	transposable_element_CDS	transposable_element_CDS
SO:0000101	SO:0001896	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0001896	"A CDS that is part of a transposable element." [SO:ke]	491549	\N	SOFA	sequence	1	SO	transposable_element	transposable_element_CDS
SO:0000316	SO:0001896	\N	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	SO:0001896	"A CDS that is part of a transposable element." [SO:ke]	491550	\N	SOFA	sequence	1	SO	CDS	transposable_element_CDS
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0001896	"A CDS that is part of a transposable element." [SO:ke]	1074188	SOFA	SOFA	sequence	2	SO	integrated_mobile_genetic_element	transposable_element_CDS
SO:0000836	SO:0000316	\N	"A region of an mRNA." [SO:cb]	SO:0001896	"A CDS that is part of a transposable element." [SO:ke]	1074189	SOFA	SOFA	sequence	2	SO	mRNA_region	transposable_element_CDS
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0001896	"A CDS that is part of a transposable element." [SO:ke]	1905319	SOFA	SOFA	sequence	3	SO	mobile_genetic_element	transposable_element_CDS
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0001896	"A CDS that is part of a transposable element." [SO:ke]	1905320	SOFA	SOFA	sequence	3	SO	mRNA	transposable_element_CDS
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:0001896	"A CDS that is part of a transposable element." [SO:ke]	1905321	SOFA	SOFA	sequence	3	SO	mature_transcript_region	transposable_element_CDS
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001896	"A CDS that is part of a transposable element." [SO:ke]	2929730	SOFA	SOFA	sequence	4	SO	biological_region	transposable_element_CDS
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001896	"A CDS that is part of a transposable element." [SO:ke]	2929731	SOFA	SOFA	sequence	4	SO	mature_transcript	transposable_element_CDS
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0001896	"A CDS that is part of a transposable element." [SO:ke]	2929732	SOFA	SOFA	sequence	4	SO	transcript_region	transposable_element_CDS
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001896	"A CDS that is part of a transposable element." [SO:ke]	6311254	SOFA	SOFA	sequence	8	SO	region	transposable_element_CDS
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001896	"A CDS that is part of a transposable element." [SO:ke]	4002796	SOFA	SOFA	sequence	5	SO	transcript	transposable_element_CDS
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001896	"A CDS that is part of a transposable element." [SO:ke]	4002797	SOFA	SOFA	sequence	5	SO	transcript	transposable_element_CDS
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001896	"A CDS that is part of a transposable element." [SO:ke]	4002798	SOFA	SOFA	sequence	5	SO	biological_region	transposable_element_CDS
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001896	"A CDS that is part of a transposable element." [SO:ke]	6469776	SOFA	SOFA	sequence	9	SO	sequence_feature	transposable_element_CDS
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001896	"A CDS that is part of a transposable element." [SO:ke]	4967011	SOFA	SOFA	sequence	6	SO	gene_member_region	transposable_element_CDS
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001896	"A CDS that is part of a transposable element." [SO:ke]	5741567	SOFA	SOFA	sequence	7	SO	biological_region	transposable_element_CDS
SO:0001897	\N	\N	"A pseudogene contained within a transposable element." [SO:ke]	SO:0001897	"A pseudogene contained within a transposable element." [SO:ke]	46761	\N	\N	sequence	0	SO	transposable_element_pseudogene	transposable_element_pseudogene
SO:0000101	SO:0001897	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0001897	"A pseudogene contained within a transposable element." [SO:ke]	491551	\N	SOFA	sequence	1	SO	transposable_element	transposable_element_pseudogene
SO:0000336	SO:0001897	\N	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	SO:0001897	"A pseudogene contained within a transposable element." [SO:ke]	491552	\N	SOFA	sequence	1	SO	pseudogene	transposable_element_pseudogene
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0001897	"A pseudogene contained within a transposable element." [SO:ke]	1074190	SOFA	SOFA	sequence	2	SO	integrated_mobile_genetic_element	transposable_element_pseudogene
SO:0001411	SO:0000336	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001897	"A pseudogene contained within a transposable element." [SO:ke]	1074191	SOFA	SOFA	sequence	2	SO	biological_region	transposable_element_pseudogene
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0001897	"A pseudogene contained within a transposable element." [SO:ke]	1905322	SOFA	SOFA	sequence	3	SO	mobile_genetic_element	transposable_element_pseudogene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001897	"A pseudogene contained within a transposable element." [SO:ke]	4002799	SOFA	SOFA	sequence	5	SO	region	transposable_element_pseudogene
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001897	"A pseudogene contained within a transposable element." [SO:ke]	2929733	SOFA	SOFA	sequence	4	SO	biological_region	transposable_element_pseudogene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001897	"A pseudogene contained within a transposable element." [SO:ke]	4132338	SOFA	SOFA	sequence	6	SO	sequence_feature	transposable_element_pseudogene
SO:0001898	\N	\N	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	SO:0001898	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	46762	\N	\N	sequence	0	SO	dg_repeat	dg_repeat
SO:0001797	SO:0001898	\N	"A repeat region found within the modular centromere." [SO:ke]	SO:0001898	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	491553	\N	\N	sequence	1	SO	centromeric_repeat	dg_repeat
SO:0001799	SO:0001898	\N	"The heterochromatic outer repeat region of a modular centromere. These repeats exist in tandem arrays on both chromosome arms." [SO:vw]	SO:0001898	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	491554	\N	\N	sequence	1	SO	regional_centromere_outer_repeat_region	dg_repeat
SO:0000657	SO:0001797	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0001898	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	1905326	\N	SOFA	sequence	3	SO	repeat_region	dg_repeat
SO:0001795	SO:0001799	\N	"A regional centromere is a large modular centromere found in fission yeast and higher eukaryotes. It consist of a central core region flanked by inverted inner and outer repeat regions." [PMID:7502067, SO:vw]	SO:0001898	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	1074193	\N	\N	sequence	2	SO	regional_centromere	dg_repeat
SO:0001797	SO:0001799	\N	"A repeat region found within the modular centromere." [SO:ke]	SO:0001898	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	1074194	\N	\N	sequence	2	SO	centromeric_repeat	dg_repeat
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001898	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	2018247	SOFA	SOFA	sequence	4	SO	biological_region	dg_repeat
SO:0000577	SO:0001795	\N	"A region of chromosome where the spindle fibers attach during mitosis and meiosis." [SO:ke]	SO:0001898	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	1905325	\N	SOFA	sequence	3	SO	centromere	dg_repeat
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001898	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	6699493	SOFA	SOFA	sequence	9	SO	region	dg_repeat
SO:0000628	SO:0000577	\N	"" []	SO:0001898	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	2929736	SOFA	SOFA	sequence	4	SO	chromosomal_structural_element	dg_repeat
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001898	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	6778571	SOFA	SOFA	sequence	10	SO	sequence_feature	dg_repeat
SO:0000830	SO:0000628	\N	"A region of a chromosome." [SO:ke]	SO:0001898	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	4002801	SOFA	SOFA	sequence	5	SO	chromosome_part	dg_repeat
SO:0000340	SO:0000830	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0001898	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	4967013	SOFA	SOFA	sequence	6	SO	chromosome	dg_repeat
SO:0001411	SO:0000830	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001898	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	4967014	SOFA	SOFA	sequence	6	SO	biological_region	dg_repeat
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001898	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	5741568	SOFA	SOFA	sequence	7	SO	replicon	dg_repeat
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001898	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	6311255	SOFA	SOFA	sequence	8	SO	biological_region	dg_repeat
SO:0001899	\N	\N	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	SO:0001899	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	46763	\N	\N	sequence	0	SO	dh_repeat	dh_repeat
SO:0001797	SO:0001899	\N	"A repeat region found within the modular centromere." [SO:ke]	SO:0001899	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	491555	\N	\N	sequence	1	SO	centromeric_repeat	dh_repeat
SO:0001799	SO:0001899	\N	"The heterochromatic outer repeat region of a modular centromere. These repeats exist in tandem arrays on both chromosome arms." [SO:vw]	SO:0001899	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	491556	\N	\N	sequence	1	SO	regional_centromere_outer_repeat_region	dh_repeat
SO:0000657	SO:0001797	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0001899	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	1905329	\N	SOFA	sequence	3	SO	repeat_region	dh_repeat
SO:0001795	SO:0001799	\N	"A regional centromere is a large modular centromere found in fission yeast and higher eukaryotes. It consist of a central core region flanked by inverted inner and outer repeat regions." [PMID:7502067, SO:vw]	SO:0001899	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	1074196	\N	\N	sequence	2	SO	regional_centromere	dh_repeat
SO:0001797	SO:0001799	\N	"A repeat region found within the modular centromere." [SO:ke]	SO:0001899	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	1074197	\N	\N	sequence	2	SO	centromeric_repeat	dh_repeat
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001899	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	2018248	SOFA	SOFA	sequence	4	SO	biological_region	dh_repeat
SO:0000577	SO:0001795	\N	"A region of chromosome where the spindle fibers attach during mitosis and meiosis." [SO:ke]	SO:0001899	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	1905328	\N	SOFA	sequence	3	SO	centromere	dh_repeat
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001899	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	6699494	SOFA	SOFA	sequence	9	SO	region	dh_repeat
SO:0000628	SO:0000577	\N	"" []	SO:0001899	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	2929738	SOFA	SOFA	sequence	4	SO	chromosomal_structural_element	dh_repeat
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001899	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	6778572	SOFA	SOFA	sequence	10	SO	sequence_feature	dh_repeat
SO:0000830	SO:0000628	\N	"A region of a chromosome." [SO:ke]	SO:0001899	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	4002803	SOFA	SOFA	sequence	5	SO	chromosome_part	dh_repeat
SO:0000340	SO:0000830	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0001899	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	4967015	SOFA	SOFA	sequence	6	SO	chromosome	dh_repeat
SO:0001411	SO:0000830	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001899	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	4967016	SOFA	SOFA	sequence	6	SO	biological_region	dh_repeat
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001899	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	5741570	SOFA	SOFA	sequence	7	SO	replicon	dh_repeat
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001899	"A repeat region which is part of the regional centromere outer repeat region." [PMID:16407326, SO:vw]	6311256	SOFA	SOFA	sequence	8	SO	biological_region	dh_repeat
SO:0001900	\N	\N	"A promoter element that contains a core sequence TGACGT, bound by a protein complex that regulates transcription of genes encoding PKA pathway components." [PMID:15448137]	SO:0001900	"A promoter element that contains a core sequence TGACGT, bound by a protein complex that regulates transcription of genes encoding PKA pathway components." [PMID:15448137]	46764	\N	\N	sequence	0	SO	M26_binding_site	M26_binding_site
SO:0000713	SO:0001900	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001900	"A promoter element that contains a core sequence TGACGT, bound by a protein complex that regulates transcription of genes encoding PKA pathway components." [PMID:15448137]	491557	\N	\N	sequence	1	SO	DNA_motif	M26_binding_site
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001900	"A promoter element that contains a core sequence TGACGT, bound by a protein complex that regulates transcription of genes encoding PKA pathway components." [PMID:15448137]	1074198	\N	SOFA	sequence	2	SO	nucleotide_motif	M26_binding_site
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001900	"A promoter element that contains a core sequence TGACGT, bound by a protein complex that regulates transcription of genes encoding PKA pathway components." [PMID:15448137]	1905330	SOFA	SOFA	sequence	3	SO	sequence_motif	M26_binding_site
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001900	"A promoter element that contains a core sequence TGACGT, bound by a protein complex that regulates transcription of genes encoding PKA pathway components." [PMID:15448137]	2929739	SOFA	SOFA	sequence	4	SO	biological_region	M26_binding_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001900	"A promoter element that contains a core sequence TGACGT, bound by a protein complex that regulates transcription of genes encoding PKA pathway components." [PMID:15448137]	4002804	SOFA	SOFA	sequence	5	SO	region	M26_binding_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001900	"A promoter element that contains a core sequence TGACGT, bound by a protein complex that regulates transcription of genes encoding PKA pathway components." [PMID:15448137]	4967017	SOFA	SOFA	sequence	6	SO	sequence_feature	M26_binding_site
SO:0001901	\N	\N	"A conserved 17-bp sequence (5'-ATCA(C/A)AACCCTAACCCT-3') commonly present upstream of the start site of histone transcription units functioning as a transcription factor binding site." [PMID:17452352, PMID:4092687]	SO:0001901	"A conserved 17-bp sequence (5'-ATCA(C/A)AACCCTAACCCT-3') commonly present upstream of the start site of histone transcription units functioning as a transcription factor binding site." [PMID:17452352, PMID:4092687]	46765	\N	\N	sequence	0	SO	AACCCT_box	AACCCT_box
SO:0001660	SO:0001901	\N	"" []	SO:0001901	"A conserved 17-bp sequence (5'-ATCA(C/A)AACCCTAACCCT-3') commonly present upstream of the start site of histone transcription units functioning as a transcription factor binding site." [PMID:17452352, PMID:4092687]	491558	\N	\N	sequence	1	SO	core_promoter_element	AACCCT_box
SO:0001659	SO:0001660	\N	"" []	SO:0001901	"A conserved 17-bp sequence (5'-ATCA(C/A)AACCCTAACCCT-3') commonly present upstream of the start site of histone transcription units functioning as a transcription factor binding site." [PMID:17452352, PMID:4092687]	1074199	\N	\N	sequence	2	SO	promoter_element	AACCCT_box
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001901	"A conserved 17-bp sequence (5'-ATCA(C/A)AACCCTAACCCT-3') commonly present upstream of the start site of histone transcription units functioning as a transcription factor binding site." [PMID:17452352, PMID:4092687]	1905331	\N	\N	sequence	3	SO	DNA_motif	AACCCT_box
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001901	"A conserved 17-bp sequence (5'-ATCA(C/A)AACCCTAACCCT-3') commonly present upstream of the start site of histone transcription units functioning as a transcription factor binding site." [PMID:17452352, PMID:4092687]	2929740	\N	SOFA	sequence	4	SO	nucleotide_motif	AACCCT_box
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001901	"A conserved 17-bp sequence (5'-ATCA(C/A)AACCCTAACCCT-3') commonly present upstream of the start site of histone transcription units functioning as a transcription factor binding site." [PMID:17452352, PMID:4092687]	4002805	SOFA	SOFA	sequence	5	SO	sequence_motif	AACCCT_box
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001901	"A conserved 17-bp sequence (5'-ATCA(C/A)AACCCTAACCCT-3') commonly present upstream of the start site of histone transcription units functioning as a transcription factor binding site." [PMID:17452352, PMID:4092687]	4967018	SOFA	SOFA	sequence	6	SO	biological_region	AACCCT_box
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001901	"A conserved 17-bp sequence (5'-ATCA(C/A)AACCCTAACCCT-3') commonly present upstream of the start site of histone transcription units functioning as a transcription factor binding site." [PMID:17452352, PMID:4092687]	5741572	SOFA	SOFA	sequence	7	SO	region	AACCCT_box
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001901	"A conserved 17-bp sequence (5'-ATCA(C/A)AACCCTAACCCT-3') commonly present upstream of the start site of histone transcription units functioning as a transcription factor binding site." [PMID:17452352, PMID:4092687]	6311257	SOFA	SOFA	sequence	8	SO	sequence_feature	AACCCT_box
SO:0001902	\N	\N	"A region surrounding a cis_splice site, either within 1-3 bases of the exon or 3-8 bases of the intron." [SO:bm]	SO:0001902	"A region surrounding a cis_splice site, either within 1-3 bases of the exon or 3-8 bases of the intron." [SO:bm]	46766	\N	\N	sequence	0	SO	splice_region	splice_region
SO:0000185	SO:0001902	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001902	"A region surrounding a cis_splice site, either within 1-3 bases of the exon or 3-8 bases of the intron." [SO:bm]	491559	\N	SOFA	sequence	1	SO	primary_transcript	splice_region
SO:0000835	SO:0001902	\N	"A part of a primary transcript." [SO:ke]	SO:0001902	"A region surrounding a cis_splice site, either within 1-3 bases of the exon or 3-8 bases of the intron." [SO:bm]	491560	\N	SOFA	sequence	1	SO	primary_transcript_region	splice_region
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001902	"A region surrounding a cis_splice site, either within 1-3 bases of the exon or 3-8 bases of the intron." [SO:bm]	1905333	SOFA	SOFA	sequence	3	SO	transcript	splice_region
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001902	"A region surrounding a cis_splice site, either within 1-3 bases of the exon or 3-8 bases of the intron." [SO:bm]	1074201	SOFA	SOFA	sequence	2	SO	primary_transcript	splice_region
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0001902	"A region surrounding a cis_splice site, either within 1-3 bases of the exon or 3-8 bases of the intron." [SO:bm]	1074202	SOFA	SOFA	sequence	2	SO	transcript_region	splice_region
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001902	"A region surrounding a cis_splice site, either within 1-3 bases of the exon or 3-8 bases of the intron." [SO:bm]	2018249	SOFA	SOFA	sequence	4	SO	gene_member_region	splice_region
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001902	"A region surrounding a cis_splice site, either within 1-3 bases of the exon or 3-8 bases of the intron." [SO:bm]	1905334	SOFA	SOFA	sequence	3	SO	transcript	splice_region
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001902	"A region surrounding a cis_splice site, either within 1-3 bases of the exon or 3-8 bases of the intron." [SO:bm]	1905335	SOFA	SOFA	sequence	3	SO	biological_region	splice_region
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001902	"A region surrounding a cis_splice site, either within 1-3 bases of the exon or 3-8 bases of the intron." [SO:bm]	3174011	SOFA	SOFA	sequence	5	SO	biological_region	splice_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001902	"A region surrounding a cis_splice site, either within 1-3 bases of the exon or 3-8 bases of the intron." [SO:bm]	4385876	SOFA	SOFA	sequence	6	SO	region	splice_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001902	"A region surrounding a cis_splice site, either within 1-3 bases of the exon or 3-8 bases of the intron." [SO:bm]	5180760	SOFA	SOFA	sequence	7	SO	sequence_feature	splice_region
SO:0001904	\N	\N	"Non-coding RNA transcribed from the opposite DNA strand compared with other transcripts and overlap in part with sense RNA." [PMID:19638999]	SO:0001904	"Non-coding RNA transcribed from the opposite DNA strand compared with other transcripts and overlap in part with sense RNA." [PMID:19638999]	46767	\N	\N	sequence	0	SO	antisense_lncRNA	antisense_lncRNA
SO:0001877	SO:0001904	\N	"A non-coding RNA over 200nucleotides in length." [HGNC:mw]	SO:0001904	"Non-coding RNA transcribed from the opposite DNA strand compared with other transcripts and overlap in part with sense RNA." [PMID:19638999]	491561	\N	\N	sequence	1	SO	lnc_RNA	antisense_lncRNA
SO:0000655	SO:0001877	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0001904	"Non-coding RNA transcribed from the opposite DNA strand compared with other transcripts and overlap in part with sense RNA." [PMID:19638999]	1074203	\N	SOFA	sequence	2	SO	ncRNA	antisense_lncRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001904	"Non-coding RNA transcribed from the opposite DNA strand compared with other transcripts and overlap in part with sense RNA." [PMID:19638999]	1905336	SOFA	SOFA	sequence	3	SO	mature_transcript	antisense_lncRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001904	"Non-coding RNA transcribed from the opposite DNA strand compared with other transcripts and overlap in part with sense RNA." [PMID:19638999]	2929743	SOFA	SOFA	sequence	4	SO	transcript	antisense_lncRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001904	"Non-coding RNA transcribed from the opposite DNA strand compared with other transcripts and overlap in part with sense RNA." [PMID:19638999]	4002808	SOFA	SOFA	sequence	5	SO	gene_member_region	antisense_lncRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001904	"Non-coding RNA transcribed from the opposite DNA strand compared with other transcripts and overlap in part with sense RNA." [PMID:19638999]	4967019	SOFA	SOFA	sequence	6	SO	biological_region	antisense_lncRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001904	"Non-coding RNA transcribed from the opposite DNA strand compared with other transcripts and overlap in part with sense RNA." [PMID:19638999]	5741573	SOFA	SOFA	sequence	7	SO	region	antisense_lncRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001904	"Non-coding RNA transcribed from the opposite DNA strand compared with other transcripts and overlap in part with sense RNA." [PMID:19638999]	6311258	SOFA	SOFA	sequence	8	SO	sequence_feature	antisense_lncRNA
SO:0001905	\N	\N	"A transcript that is transcribed from the outer repeat region of a regional centromere." [PomBase:mah]	SO:0001905	"A transcript that is transcribed from the outer repeat region of a regional centromere." [PomBase:mah]	46768	\N	\N	sequence	0	SO	regional_centromere_outer_repeat_transcript	regional_centromere_outer_repeat_transcript
SO:0000185	SO:0001905	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001905	"A transcript that is transcribed from the outer repeat region of a regional centromere." [PomBase:mah]	491562	\N	SOFA	sequence	1	SO	primary_transcript	regional_centromere_outer_repeat_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001905	"A transcript that is transcribed from the outer repeat region of a regional centromere." [PomBase:mah]	1074204	SOFA	SOFA	sequence	2	SO	transcript	regional_centromere_outer_repeat_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001905	"A transcript that is transcribed from the outer repeat region of a regional centromere." [PomBase:mah]	1905337	SOFA	SOFA	sequence	3	SO	gene_member_region	regional_centromere_outer_repeat_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001905	"A transcript that is transcribed from the outer repeat region of a regional centromere." [PomBase:mah]	2929744	SOFA	SOFA	sequence	4	SO	biological_region	regional_centromere_outer_repeat_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001905	"A transcript that is transcribed from the outer repeat region of a regional centromere." [PomBase:mah]	4002809	SOFA	SOFA	sequence	5	SO	region	regional_centromere_outer_repeat_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001905	"A transcript that is transcribed from the outer repeat region of a regional centromere." [PomBase:mah]	4967020	SOFA	SOFA	sequence	6	SO	sequence_feature	regional_centromere_outer_repeat_transcript
SO:0001906	\N	\N	"A sequence variant that causes the reduction of a genomic feature, with regard to the reference sequence." [SO:ke]	SO:0001906	"A sequence variant that causes the reduction of a genomic feature, with regard to the reference sequence." [SO:ke]	46769	\N	\N	sequence	0	SO	feature_truncation	feature_truncation
SO:0001878	SO:0001906	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001906	"A sequence variant that causes the reduction of a genomic feature, with regard to the reference sequence." [SO:ke]	491563	\N	\N	sequence	1	SO	feature_variant	feature_truncation
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001906	"A sequence variant that causes the reduction of a genomic feature, with regard to the reference sequence." [SO:ke]	1074205	\N	\N	sequence	2	SO	structural_variant	feature_truncation
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001906	"A sequence variant that causes the reduction of a genomic feature, with regard to the reference sequence." [SO:ke]	1905338	\N	\N	sequence	3	SO	sequence_variant	feature_truncation
SO:0001907	\N	\N	"A sequence variant that causes the extension of a genomic feature, with regard to the reference sequence." [SO:ke]	SO:0001907	"A sequence variant that causes the extension of a genomic feature, with regard to the reference sequence." [SO:ke]	46770	\N	\N	sequence	0	SO	feature_elongation	feature_elongation
SO:0001878	SO:0001907	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001907	"A sequence variant that causes the extension of a genomic feature, with regard to the reference sequence." [SO:ke]	491564	\N	\N	sequence	1	SO	feature_variant	feature_elongation
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001907	"A sequence variant that causes the extension of a genomic feature, with regard to the reference sequence." [SO:ke]	1074206	\N	\N	sequence	2	SO	structural_variant	feature_elongation
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001907	"A sequence variant that causes the extension of a genomic feature, with regard to the reference sequence." [SO:ke]	1905339	\N	\N	sequence	3	SO	sequence_variant	feature_elongation
SO:0001908	\N	\N	"A sequence variant that causes the extension of a genomic feature from within the feature rather than from the terminus of the feature, with regard to the reference sequence." [SO:ke]	SO:0001908	"A sequence variant that causes the extension of a genomic feature from within the feature rather than from the terminus of the feature, with regard to the reference sequence." [SO:ke]	46771	\N	\N	sequence	0	SO	internal_feature_elongation	internal_feature_elongation
SO:0001907	SO:0001908	\N	"A sequence variant that causes the extension of a genomic feature, with regard to the reference sequence." [SO:ke]	SO:0001908	"A sequence variant that causes the extension of a genomic feature from within the feature rather than from the terminus of the feature, with regard to the reference sequence." [SO:ke]	491565	\N	\N	sequence	1	SO	feature_elongation	internal_feature_elongation
SO:0001878	SO:0001907	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001908	"A sequence variant that causes the extension of a genomic feature from within the feature rather than from the terminus of the feature, with regard to the reference sequence." [SO:ke]	1074207	\N	\N	sequence	2	SO	feature_variant	internal_feature_elongation
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001908	"A sequence variant that causes the extension of a genomic feature from within the feature rather than from the terminus of the feature, with regard to the reference sequence." [SO:ke]	1905340	\N	\N	sequence	3	SO	structural_variant	internal_feature_elongation
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001908	"A sequence variant that causes the extension of a genomic feature from within the feature rather than from the terminus of the feature, with regard to the reference sequence." [SO:ke]	2929745	\N	\N	sequence	4	SO	sequence_variant	internal_feature_elongation
SO:0001909	\N	\N	"A frameshift variant that causes the translational reading frame to be extended relative to the reference feature." [SO:ke]	SO:0001909	"A frameshift variant that causes the translational reading frame to be extended relative to the reference feature." [SO:ke]	46772	\N	\N	sequence	0	SO	frameshift_elongation	frameshift_elongation
SO:0001589	SO:0001909	\N	"A sequence variant which causes a disruption of the translational reading frame, because the number of nucleotides inserted or deleted is not a multiple of three." [SO:ke]	SO:0001909	"A frameshift variant that causes the translational reading frame to be extended relative to the reference feature." [SO:ke]	491566	\N	\N	sequence	1	SO	frameshift_variant	frameshift_elongation
SO:0001908	SO:0001909	\N	"A sequence variant that causes the extension of a genomic feature from within the feature rather than from the terminus of the feature, with regard to the reference sequence." [SO:ke]	SO:0001909	"A frameshift variant that causes the translational reading frame to be extended relative to the reference feature." [SO:ke]	491567	\N	\N	sequence	1	SO	internal_feature_elongation	frameshift_elongation
SO:0001818	SO:0001589	\N	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	SO:0001909	"A frameshift variant that causes the translational reading frame to be extended relative to the reference feature." [SO:ke]	1074208	\N	\N	sequence	2	SO	protein_altering_variant	frameshift_elongation
SO:0001907	SO:0001908	\N	"A sequence variant that causes the extension of a genomic feature, with regard to the reference sequence." [SO:ke]	SO:0001909	"A frameshift variant that causes the translational reading frame to be extended relative to the reference feature." [SO:ke]	1074209	\N	\N	sequence	2	SO	feature_elongation	frameshift_elongation
SO:0001580	SO:0001818	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001909	"A frameshift variant that causes the translational reading frame to be extended relative to the reference feature." [SO:ke]	1905341	\N	\N	sequence	3	SO	coding_sequence_variant	frameshift_elongation
SO:0001878	SO:0001907	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001909	"A frameshift variant that causes the translational reading frame to be extended relative to the reference feature." [SO:ke]	1905342	\N	\N	sequence	3	SO	feature_variant	frameshift_elongation
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001909	"A frameshift variant that causes the translational reading frame to be extended relative to the reference feature." [SO:ke]	2929746	\N	\N	sequence	4	SO	exon_variant	frameshift_elongation
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001909	"A frameshift variant that causes the translational reading frame to be extended relative to the reference feature." [SO:ke]	2929747	\N	\N	sequence	4	SO	coding_transcript_variant	frameshift_elongation
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001909	"A frameshift variant that causes the translational reading frame to be extended relative to the reference feature." [SO:ke]	6311259	\N	\N	sequence	8	SO	structural_variant	frameshift_elongation
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001909	"A frameshift variant that causes the translational reading frame to be extended relative to the reference feature." [SO:ke]	4002810	\N	\N	sequence	5	SO	transcript_variant	frameshift_elongation
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001909	"A frameshift variant that causes the translational reading frame to be extended relative to the reference feature." [SO:ke]	4002811	\N	\N	sequence	5	SO	transcript_variant	frameshift_elongation
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001909	"A frameshift variant that causes the translational reading frame to be extended relative to the reference feature." [SO:ke]	6409722	\N	\N	sequence	9	SO	sequence_variant	frameshift_elongation
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001909	"A frameshift variant that causes the translational reading frame to be extended relative to the reference feature." [SO:ke]	4967021	\N	\N	sequence	6	SO	gene_variant	frameshift_elongation
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001909	"A frameshift variant that causes the translational reading frame to be extended relative to the reference feature." [SO:ke]	5741574	\N	\N	sequence	7	SO	feature_variant	frameshift_elongation
SO:0001910	\N	\N	"A frameshift variant that causes the translational reading frame to be shortened relative to the reference feature." [SO:ke]	SO:0001910	"A frameshift variant that causes the translational reading frame to be shortened relative to the reference feature." [SO:ke]	46773	\N	\N	sequence	0	SO	frameshift_truncation	frameshift_truncation
SO:0001589	SO:0001910	\N	"A sequence variant which causes a disruption of the translational reading frame, because the number of nucleotides inserted or deleted is not a multiple of three." [SO:ke]	SO:0001910	"A frameshift variant that causes the translational reading frame to be shortened relative to the reference feature." [SO:ke]	491568	\N	\N	sequence	1	SO	frameshift_variant	frameshift_truncation
SO:0001906	SO:0001910	\N	"A sequence variant that causes the reduction of a genomic feature, with regard to the reference sequence." [SO:ke]	SO:0001910	"A frameshift variant that causes the translational reading frame to be shortened relative to the reference feature." [SO:ke]	491569	\N	\N	sequence	1	SO	feature_truncation	frameshift_truncation
SO:0001818	SO:0001589	\N	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	SO:0001910	"A frameshift variant that causes the translational reading frame to be shortened relative to the reference feature." [SO:ke]	1074210	\N	\N	sequence	2	SO	protein_altering_variant	frameshift_truncation
SO:0001878	SO:0001906	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001910	"A frameshift variant that causes the translational reading frame to be shortened relative to the reference feature." [SO:ke]	1074211	\N	\N	sequence	2	SO	feature_variant	frameshift_truncation
SO:0001580	SO:0001818	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001910	"A frameshift variant that causes the translational reading frame to be shortened relative to the reference feature." [SO:ke]	1905343	\N	\N	sequence	3	SO	coding_sequence_variant	frameshift_truncation
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001910	"A frameshift variant that causes the translational reading frame to be shortened relative to the reference feature." [SO:ke]	6311260	\N	\N	sequence	8	SO	structural_variant	frameshift_truncation
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001910	"A frameshift variant that causes the translational reading frame to be shortened relative to the reference feature." [SO:ke]	2929749	\N	\N	sequence	4	SO	exon_variant	frameshift_truncation
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001910	"A frameshift variant that causes the translational reading frame to be shortened relative to the reference feature." [SO:ke]	2929750	\N	\N	sequence	4	SO	coding_transcript_variant	frameshift_truncation
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001910	"A frameshift variant that causes the translational reading frame to be shortened relative to the reference feature." [SO:ke]	6378767	\N	\N	sequence	9	SO	sequence_variant	frameshift_truncation
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001910	"A frameshift variant that causes the translational reading frame to be shortened relative to the reference feature." [SO:ke]	4002813	\N	\N	sequence	5	SO	transcript_variant	frameshift_truncation
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001910	"A frameshift variant that causes the translational reading frame to be shortened relative to the reference feature." [SO:ke]	4002814	\N	\N	sequence	5	SO	transcript_variant	frameshift_truncation
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001910	"A frameshift variant that causes the translational reading frame to be shortened relative to the reference feature." [SO:ke]	4967022	\N	\N	sequence	6	SO	gene_variant	frameshift_truncation
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001910	"A frameshift variant that causes the translational reading frame to be shortened relative to the reference feature." [SO:ke]	5741575	\N	\N	sequence	7	SO	feature_variant	frameshift_truncation
SO:0001911	\N	\N	"A sequence variant where copies of a feature are increased relative to the reference." [SO:ke]	SO:0001911	"A sequence variant where copies of a feature are increased relative to the reference." [SO:ke]	46774	\N	\N	sequence	0	SO	copy_number_increase	copy_number_increase
SO:0001563	SO:0001911	\N	"A sequence variant where copies of a feature (CNV) are either increased or decreased." [SO:ke]	SO:0001911	"A sequence variant where copies of a feature are increased relative to the reference." [SO:ke]	491570	\N	\N	sequence	1	SO	copy_number_change	copy_number_increase
SO:0002160	SO:0001563	\N	"A sequence variant that changes the length of one or more sequence features." []	SO:0001911	"A sequence variant where copies of a feature are increased relative to the reference." [SO:ke]	1074212	\N	\N	sequence	2	SO	sequence_length_variant	copy_number_increase
SO:0001537	SO:0002160	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001911	"A sequence variant where copies of a feature are increased relative to the reference." [SO:ke]	1905345	\N	\N	sequence	3	SO	structural_variant	copy_number_increase
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001911	"A sequence variant where copies of a feature are increased relative to the reference." [SO:ke]	2929752	\N	\N	sequence	4	SO	sequence_variant	copy_number_increase
SO:0001912	\N	\N	"A sequence variant where copies of a feature are decreased relative to the reference." [SO:ke]	SO:0001912	"A sequence variant where copies of a feature are decreased relative to the reference." [SO:ke]	46775	\N	\N	sequence	0	SO	copy_number_decrease	copy_number_decrease
SO:0001563	SO:0001912	\N	"A sequence variant where copies of a feature (CNV) are either increased or decreased." [SO:ke]	SO:0001912	"A sequence variant where copies of a feature are decreased relative to the reference." [SO:ke]	491571	\N	\N	sequence	1	SO	copy_number_change	copy_number_decrease
SO:0002160	SO:0001563	\N	"A sequence variant that changes the length of one or more sequence features." []	SO:0001912	"A sequence variant where copies of a feature are decreased relative to the reference." [SO:ke]	1074213	\N	\N	sequence	2	SO	sequence_length_variant	copy_number_decrease
SO:0001537	SO:0002160	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001912	"A sequence variant where copies of a feature are decreased relative to the reference." [SO:ke]	1905346	\N	\N	sequence	3	SO	structural_variant	copy_number_decrease
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001912	"A sequence variant where copies of a feature are decreased relative to the reference." [SO:ke]	2929753	\N	\N	sequence	4	SO	sequence_variant	copy_number_decrease
SO:0001913	\N	\N	"A bacterial promoter with sigma ecf factor binding dependency. This is a type of bacterial promoters that requires a sigma ECF factor to bind to identified -10 and -35 sequence regions in order to mediate binding of the RNA polymerase to the promoter region as part of transcription initiation." [Invitrogen:kc]	SO:0001913	"A bacterial promoter with sigma ecf factor binding dependency. This is a type of bacterial promoters that requires a sigma ECF factor to bind to identified -10 and -35 sequence regions in order to mediate binding of the RNA polymerase to the promoter region as part of transcription initiation." [Invitrogen:kc]	46776	\N	\N	sequence	0	SO	bacterial_RNApol_promoter_sigma_ecf	bacterial_RNApol_promoter_sigma_ecf
SO:0000613	SO:0001913	\N	"A DNA sequence to which bacterial RNA polymerase binds, to begin transcription." [SO:ke]	SO:0001913	"A bacterial promoter with sigma ecf factor binding dependency. This is a type of bacterial promoters that requires a sigma ECF factor to bind to identified -10 and -35 sequence regions in order to mediate binding of the RNA polymerase to the promoter region as part of transcription initiation." [Invitrogen:kc]	491572	\N	\N	sequence	1	SO	bacterial_RNApol_promoter	bacterial_RNApol_promoter_sigma_ecf
SO:0000752	SO:0000613	\N	"" []	SO:0001913	"A bacterial promoter with sigma ecf factor binding dependency. This is a type of bacterial promoters that requires a sigma ECF factor to bind to identified -10 and -35 sequence regions in order to mediate binding of the RNA polymerase to the promoter region as part of transcription initiation." [Invitrogen:kc]	1074214	\N	SOFA	sequence	2	SO	gene_group_regulatory_region	bacterial_RNApol_promoter_sigma_ecf
SO:0001203	SO:0000613	\N	"A region (DNA) to which RNA polymerase binds, to begin transcription." [xenbase:jb]	SO:0001913	"A bacterial promoter with sigma ecf factor binding dependency. This is a type of bacterial promoters that requires a sigma ECF factor to bind to identified -10 and -35 sequence regions in order to mediate binding of the RNA polymerase to the promoter region as part of transcription initiation." [Invitrogen:kc]	1074215	\N	\N	sequence	2	SO	RNA_polymerase_promoter	bacterial_RNApol_promoter_sigma_ecf
SO:0001679	SO:0000752	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001913	"A bacterial promoter with sigma ecf factor binding dependency. This is a type of bacterial promoters that requires a sigma ECF factor to bind to identified -10 and -35 sequence regions in order to mediate binding of the RNA polymerase to the promoter region as part of transcription initiation." [Invitrogen:kc]	1905347	SOFA	SOFA	sequence	3	SO	transcription_regulatory_region	bacterial_RNApol_promoter_sigma_ecf
SO:0000167	SO:0001203	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0001913	"A bacterial promoter with sigma ecf factor binding dependency. This is a type of bacterial promoters that requires a sigma ECF factor to bind to identified -10 and -35 sequence regions in order to mediate binding of the RNA polymerase to the promoter region as part of transcription initiation." [Invitrogen:kc]	1905348	\N	SOFA	sequence	3	SO	promoter	bacterial_RNApol_promoter_sigma_ecf
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001913	"A bacterial promoter with sigma ecf factor binding dependency. This is a type of bacterial promoters that requires a sigma ECF factor to bind to identified -10 and -35 sequence regions in order to mediate binding of the RNA polymerase to the promoter region as part of transcription initiation." [Invitrogen:kc]	4967024	SOFA	SOFA	sequence	6	SO	regulatory_region	bacterial_RNApol_promoter_sigma_ecf
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001913	"A bacterial promoter with sigma ecf factor binding dependency. This is a type of bacterial promoters that requires a sigma ECF factor to bind to identified -10 and -35 sequence regions in order to mediate binding of the RNA polymerase to the promoter region as part of transcription initiation." [Invitrogen:kc]	2929755	SOFA	SOFA	sequence	4	SO	transcriptional_cis_regulatory_region	bacterial_RNApol_promoter_sigma_ecf
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001913	"A bacterial promoter with sigma ecf factor binding dependency. This is a type of bacterial promoters that requires a sigma ECF factor to bind to identified -10 and -35 sequence regions in order to mediate binding of the RNA polymerase to the promoter region as part of transcription initiation." [Invitrogen:kc]	5180761	SOFA	SOFA	sequence	7	SO	gene_member_region	bacterial_RNApol_promoter_sigma_ecf
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001913	"A bacterial promoter with sigma ecf factor binding dependency. This is a type of bacterial promoters that requires a sigma ECF factor to bind to identified -10 and -35 sequence regions in order to mediate binding of the RNA polymerase to the promoter region as part of transcription initiation." [Invitrogen:kc]	4002816	SOFA	SOFA	sequence	5	SO	transcription_regulatory_region	bacterial_RNApol_promoter_sigma_ecf
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001913	"A bacterial promoter with sigma ecf factor binding dependency. This is a type of bacterial promoters that requires a sigma ECF factor to bind to identified -10 and -35 sequence regions in order to mediate binding of the RNA polymerase to the promoter region as part of transcription initiation." [Invitrogen:kc]	5996463	SOFA	SOFA	sequence	8	SO	biological_region	bacterial_RNApol_promoter_sigma_ecf
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001913	"A bacterial promoter with sigma ecf factor binding dependency. This is a type of bacterial promoters that requires a sigma ECF factor to bind to identified -10 and -35 sequence regions in order to mediate binding of the RNA polymerase to the promoter region as part of transcription initiation." [Invitrogen:kc]	6550293	SOFA	SOFA	sequence	9	SO	region	bacterial_RNApol_promoter_sigma_ecf
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001913	"A bacterial promoter with sigma ecf factor binding dependency. This is a type of bacterial promoters that requires a sigma ECF factor to bind to identified -10 and -35 sequence regions in order to mediate binding of the RNA polymerase to the promoter region as part of transcription initiation." [Invitrogen:kc]	6888944	SOFA	SOFA	sequence	10	SO	sequence_feature	bacterial_RNApol_promoter_sigma_ecf
SO:0001914	\N	\N	"A DNA motif that is found in eukaryotic rDNA repeats, and is a site of replication fork pausing." [PMID:14645529]	SO:0001914	"A DNA motif that is found in eukaryotic rDNA repeats, and is a site of replication fork pausing." [PMID:14645529]	46777	\N	\N	sequence	0	SO	rDNA_replication_fork_barrier	rDNA_replication_fork_barrier
SO:0000713	SO:0001914	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001914	"A DNA motif that is found in eukaryotic rDNA repeats, and is a site of replication fork pausing." [PMID:14645529]	491573	\N	\N	sequence	1	SO	DNA_motif	rDNA_replication_fork_barrier
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001914	"A DNA motif that is found in eukaryotic rDNA repeats, and is a site of replication fork pausing." [PMID:14645529]	1074216	\N	SOFA	sequence	2	SO	nucleotide_motif	rDNA_replication_fork_barrier
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001914	"A DNA motif that is found in eukaryotic rDNA repeats, and is a site of replication fork pausing." [PMID:14645529]	1905349	SOFA	SOFA	sequence	3	SO	sequence_motif	rDNA_replication_fork_barrier
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001914	"A DNA motif that is found in eukaryotic rDNA repeats, and is a site of replication fork pausing." [PMID:14645529]	2929756	SOFA	SOFA	sequence	4	SO	biological_region	rDNA_replication_fork_barrier
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001914	"A DNA motif that is found in eukaryotic rDNA repeats, and is a site of replication fork pausing." [PMID:14645529]	4002817	SOFA	SOFA	sequence	5	SO	region	rDNA_replication_fork_barrier
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001914	"A DNA motif that is found in eukaryotic rDNA repeats, and is a site of replication fork pausing." [PMID:14645529]	4967025	SOFA	SOFA	sequence	6	SO	sequence_feature	rDNA_replication_fork_barrier
SO:0001915	\N	\N	"A region defined by a cluster of experimentally determined transcription starting sites." [PMID:19624849, PMID:21372179, SO:andrewgibson]	SO:0001915	"A region defined by a cluster of experimentally determined transcription starting sites." [PMID:19624849, PMID:21372179, SO:andrewgibson]	46778	\N	\N	sequence	0	SO	transcription_start_cluster	transcription_start_cluster
SO:0001410	SO:0001915	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001915	"A region defined by a cluster of experimentally determined transcription starting sites." [PMID:19624849, PMID:21372179, SO:andrewgibson]	491574	\N	SOFA	sequence	1	SO	experimental_feature	transcription_start_cluster
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001915	"A region defined by a cluster of experimentally determined transcription starting sites." [PMID:19624849, PMID:21372179, SO:andrewgibson]	1074217	SOFA	SOFA	sequence	2	SO	region	transcription_start_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001915	"A region defined by a cluster of experimentally determined transcription starting sites." [PMID:19624849, PMID:21372179, SO:andrewgibson]	1905350	SOFA	SOFA	sequence	3	SO	sequence_feature	transcription_start_cluster
SO:0001916	\N	\N	"A CAGE tag is a sequence tag hat corresponds to 5' ends of mRNA at cap sites, produced by cap analysis gene expression and used to identify transcriptional start sites." [SO:andrewgibson]	SO:0001916	"A CAGE tag is a sequence tag hat corresponds to 5' ends of mRNA at cap sites, produced by cap analysis gene expression and used to identify transcriptional start sites." [SO:andrewgibson]	46779	\N	\N	sequence	0	SO	CAGE_tag	CAGE_tag
SO:0000324	SO:0001916	\N	"A nucleotide sequence that may be used to identify a larger sequence." [SO:ke]	SO:0001916	"A CAGE tag is a sequence tag hat corresponds to 5' ends of mRNA at cap sites, produced by cap analysis gene expression and used to identify transcriptional start sites." [SO:andrewgibson]	491575	\N	SOFA	sequence	1	SO	tag	CAGE_tag
SO:0000696	SO:0000324	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0001916	"A CAGE tag is a sequence tag hat corresponds to 5' ends of mRNA at cap sites, produced by cap analysis gene expression and used to identify transcriptional start sites." [SO:andrewgibson]	1074218	SOFA	SOFA	sequence	2	SO	oligo	CAGE_tag
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0001916	"A CAGE tag is a sequence tag hat corresponds to 5' ends of mRNA at cap sites, produced by cap analysis gene expression and used to identify transcriptional start sites." [SO:andrewgibson]	1905351	SOFA	SOFA	sequence	3	SO	reagent	CAGE_tag
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001916	"A CAGE tag is a sequence tag hat corresponds to 5' ends of mRNA at cap sites, produced by cap analysis gene expression and used to identify transcriptional start sites." [SO:andrewgibson]	2929757	SOFA	SOFA	sequence	4	SO	biomaterial_region	CAGE_tag
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001916	"A CAGE tag is a sequence tag hat corresponds to 5' ends of mRNA at cap sites, produced by cap analysis gene expression and used to identify transcriptional start sites." [SO:andrewgibson]	4002818	SOFA	SOFA	sequence	5	SO	region	CAGE_tag
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001916	"A CAGE tag is a sequence tag hat corresponds to 5' ends of mRNA at cap sites, produced by cap analysis gene expression and used to identify transcriptional start sites." [SO:andrewgibson]	4967026	SOFA	SOFA	sequence	6	SO	sequence_feature	CAGE_tag
SO:0001917	\N	\N	"A kind of transcription_initiation_cluster defined by the clustering of CAGE tags on a sequence region." [PMID:16645617, SO:andrewgibson]	SO:0001917	"A kind of transcription_initiation_cluster defined by the clustering of CAGE tags on a sequence region." [PMID:16645617, SO:andrewgibson]	46780	\N	\N	sequence	0	SO	CAGE_cluster	CAGE_cluster
SO:0001915	SO:0001917	\N	"A region defined by a cluster of experimentally determined transcription starting sites." [PMID:19624849, PMID:21372179, SO:andrewgibson]	SO:0001917	"A kind of transcription_initiation_cluster defined by the clustering of CAGE tags on a sequence region." [PMID:16645617, SO:andrewgibson]	491576	\N	\N	sequence	1	SO	transcription_start_cluster	CAGE_cluster
SO:0001410	SO:0001915	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001917	"A kind of transcription_initiation_cluster defined by the clustering of CAGE tags on a sequence region." [PMID:16645617, SO:andrewgibson]	1074219	\N	SOFA	sequence	2	SO	experimental_feature	CAGE_cluster
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001917	"A kind of transcription_initiation_cluster defined by the clustering of CAGE tags on a sequence region." [PMID:16645617, SO:andrewgibson]	1905352	SOFA	SOFA	sequence	3	SO	region	CAGE_cluster
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001917	"A kind of transcription_initiation_cluster defined by the clustering of CAGE tags on a sequence region." [PMID:16645617, SO:andrewgibson]	2929758	SOFA	SOFA	sequence	4	SO	sequence_feature	CAGE_cluster
SO:0001918	\N	\N	"A cytosine methylated at the 5 carbon." [SO:rtapella]	SO:0001918	"A cytosine methylated at the 5 carbon." [SO:rtapella]	46781	\N	\N	sequence	0	SO	5_methylcytosine	5_methylcytosine
SO:0000114	SO:0001918	\N	"A methylated deoxy-cytosine." [SO:ke]	SO:0001918	"A cytosine methylated at the 5 carbon." [SO:rtapella]	491577	\N	SOFA	sequence	1	SO	methylated_cytosine	5_methylcytosine
SO:0000306	SO:0000114	\N	"A nucleotide modified by methylation." [SO:ke]	SO:0001918	"A cytosine methylated at the 5 carbon." [SO:rtapella]	1074220	SOFA	SOFA	sequence	2	SO	methylated_DNA_base_feature	5_methylcytosine
SO:0001963	SO:0000114	\N	"A modified cytosine DNA base feature." [SO:ke]	SO:0001918	"A cytosine methylated at the 5 carbon." [SO:rtapella]	1074221	SOFA	\N	sequence	2	SO	modified_cytosine	5_methylcytosine
SO:0000305	SO:0000306	\N	"A modified nucleotide, i.e. a nucleotide other than A, T, C. G." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001918	"A cytosine methylated at the 5 carbon." [SO:rtapella]	1905353	SOFA	SOFA	sequence	3	SO	modified_DNA_base	5_methylcytosine
SO:0000305	SO:0001963	\N	"A modified nucleotide, i.e. a nucleotide other than A, T, C. G." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001918	"A cytosine methylated at the 5 carbon." [SO:rtapella]	1905354	\N	SOFA	sequence	3	SO	modified_DNA_base	5_methylcytosine
SO:0001236	SO:0000305	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001918	"A cytosine methylated at the 5 carbon." [SO:rtapella]	2929759	SOFA	SOFA	sequence	4	SO	base	5_methylcytosine
SO:0001720	SO:0000305	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001918	"A cytosine methylated at the 5 carbon." [SO:rtapella]	2929760	SOFA	SOFA	sequence	4	SO	epigenetically_modified_region	5_methylcytosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001918	"A cytosine methylated at the 5 carbon." [SO:rtapella]	4002819	SOFA	SOFA	sequence	5	SO	biological_region	5_methylcytosine
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001918	"A cytosine methylated at the 5 carbon." [SO:rtapella]	4002820	SOFA	SOFA	sequence	5	SO	biological_region	5_methylcytosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001918	"A cytosine methylated at the 5 carbon." [SO:rtapella]	4967027	SOFA	SOFA	sequence	6	SO	region	5_methylcytosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001918	"A cytosine methylated at the 5 carbon." [SO:rtapella]	5741577	SOFA	SOFA	sequence	7	SO	sequence_feature	5_methylcytosine
SO:0001919	\N	\N	"A cytosine methylated at the 4 nitrogen." [SO:rtapella]	SO:0001919	"A cytosine methylated at the 4 nitrogen." [SO:rtapella]	46782	\N	\N	sequence	0	SO	4_methylcytosine	4_methylcytosine
SO:0000114	SO:0001919	\N	"A methylated deoxy-cytosine." [SO:ke]	SO:0001919	"A cytosine methylated at the 4 nitrogen." [SO:rtapella]	491578	\N	SOFA	sequence	1	SO	methylated_cytosine	4_methylcytosine
SO:0000306	SO:0000114	\N	"A nucleotide modified by methylation." [SO:ke]	SO:0001919	"A cytosine methylated at the 4 nitrogen." [SO:rtapella]	1074222	SOFA	SOFA	sequence	2	SO	methylated_DNA_base_feature	4_methylcytosine
SO:0001963	SO:0000114	\N	"A modified cytosine DNA base feature." [SO:ke]	SO:0001919	"A cytosine methylated at the 4 nitrogen." [SO:rtapella]	1074223	SOFA	\N	sequence	2	SO	modified_cytosine	4_methylcytosine
SO:0000305	SO:0000306	\N	"A modified nucleotide, i.e. a nucleotide other than A, T, C. G." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001919	"A cytosine methylated at the 4 nitrogen." [SO:rtapella]	1905355	SOFA	SOFA	sequence	3	SO	modified_DNA_base	4_methylcytosine
SO:0000305	SO:0001963	\N	"A modified nucleotide, i.e. a nucleotide other than A, T, C. G." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001919	"A cytosine methylated at the 4 nitrogen." [SO:rtapella]	1905356	\N	SOFA	sequence	3	SO	modified_DNA_base	4_methylcytosine
SO:0001236	SO:0000305	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001919	"A cytosine methylated at the 4 nitrogen." [SO:rtapella]	2929761	SOFA	SOFA	sequence	4	SO	base	4_methylcytosine
SO:0001720	SO:0000305	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001919	"A cytosine methylated at the 4 nitrogen." [SO:rtapella]	2929762	SOFA	SOFA	sequence	4	SO	epigenetically_modified_region	4_methylcytosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001919	"A cytosine methylated at the 4 nitrogen." [SO:rtapella]	4002821	SOFA	SOFA	sequence	5	SO	biological_region	4_methylcytosine
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001919	"A cytosine methylated at the 4 nitrogen." [SO:rtapella]	4002822	SOFA	SOFA	sequence	5	SO	biological_region	4_methylcytosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001919	"A cytosine methylated at the 4 nitrogen." [SO:rtapella]	4967028	SOFA	SOFA	sequence	6	SO	region	4_methylcytosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001919	"A cytosine methylated at the 4 nitrogen." [SO:rtapella]	5741578	SOFA	SOFA	sequence	7	SO	sequence_feature	4_methylcytosine
SO:0001920	\N	\N	"An adenine methylated at the 6 nitrogen." [SO:rtapella]	SO:0001920	"An adenine methylated at the 6 nitrogen." [SO:rtapella]	46783	\N	\N	sequence	0	SO	N6_methyladenine	N6_methyladenine
SO:0000161	SO:0001920	\N	"A modified  base in which adenine has been methylated." [SO:ke]	SO:0001920	"An adenine methylated at the 6 nitrogen." [SO:rtapella]	491579	\N	SOFA	sequence	1	SO	methylated_adenine	N6_methyladenine
SO:0000306	SO:0000161	\N	"A nucleotide modified by methylation." [SO:ke]	SO:0001920	"An adenine methylated at the 6 nitrogen." [SO:rtapella]	1074224	SOFA	SOFA	sequence	2	SO	methylated_DNA_base_feature	N6_methyladenine
SO:0001962	SO:0000161	\N	"A modified adenine DNA base feature." [SO:ke]	SO:0001920	"An adenine methylated at the 6 nitrogen." [SO:rtapella]	1074225	SOFA	\N	sequence	2	SO	modified_adenine	N6_methyladenine
SO:0000305	SO:0000306	\N	"A modified nucleotide, i.e. a nucleotide other than A, T, C. G." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001920	"An adenine methylated at the 6 nitrogen." [SO:rtapella]	1905357	SOFA	SOFA	sequence	3	SO	modified_DNA_base	N6_methyladenine
SO:0000305	SO:0001962	\N	"A modified nucleotide, i.e. a nucleotide other than A, T, C. G." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001920	"An adenine methylated at the 6 nitrogen." [SO:rtapella]	1905358	\N	SOFA	sequence	3	SO	modified_DNA_base	N6_methyladenine
SO:0001236	SO:0000305	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001920	"An adenine methylated at the 6 nitrogen." [SO:rtapella]	2929763	SOFA	SOFA	sequence	4	SO	base	N6_methyladenine
SO:0001720	SO:0000305	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001920	"An adenine methylated at the 6 nitrogen." [SO:rtapella]	2929764	SOFA	SOFA	sequence	4	SO	epigenetically_modified_region	N6_methyladenine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001920	"An adenine methylated at the 6 nitrogen." [SO:rtapella]	4002823	SOFA	SOFA	sequence	5	SO	biological_region	N6_methyladenine
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001920	"An adenine methylated at the 6 nitrogen." [SO:rtapella]	4002824	SOFA	SOFA	sequence	5	SO	biological_region	N6_methyladenine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001920	"An adenine methylated at the 6 nitrogen." [SO:rtapella]	4967029	SOFA	SOFA	sequence	6	SO	region	N6_methyladenine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001920	"An adenine methylated at the 6 nitrogen." [SO:rtapella]	5741579	SOFA	SOFA	sequence	7	SO	sequence_feature	N6_methyladenine
SO:0001921	\N	\N	"A contig of mitochondria derived sequences." [GMOD:ea]	SO:0001921	"A contig of mitochondria derived sequences." [GMOD:ea]	46784	\N	\N	sequence	0	SO	mitochondrial_contig	mitochondrial_contig
SO:0000149	SO:0001921	\N	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	SO:0001921	"A contig of mitochondria derived sequences." [GMOD:ea]	491580	\N	SOFA	sequence	1	SO	contig	mitochondrial_contig
SO:0000143	SO:0000149	\N	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0001921	"A contig of mitochondria derived sequences." [GMOD:ea]	1074226	SOFA	SOFA	sequence	2	SO	assembly_component	mitochondrial_contig
SO:0000148	SO:0000149	\N	"One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's." [SO:ls]	SO:0001921	"A contig of mitochondria derived sequences." [GMOD:ea]	1074227	SOFA	SOFA	sequence	2	SO	supercontig	mitochondrial_contig
SO:0000353	SO:0000149	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001921	"A contig of mitochondria derived sequences." [GMOD:ea]	1074228	SOFA	SOFA	sequence	2	SO	sequence_assembly	mitochondrial_contig
SO:0001410	SO:0000143	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001921	"A contig of mitochondria derived sequences." [GMOD:ea]	1905359	SOFA	SOFA	sequence	3	SO	experimental_feature	mitochondrial_contig
SO:0000719	SO:0000148	\N	"An ordered and oriented set of scaffolds based on somewhat weaker sets of inferential evidence such as one set of mate pair reads together with supporting evidence from ESTs or location of markers from SNP or microsatellite maps, or cytogenetic localization of contained markers." [FB:WG]	SO:0001921	"A contig of mitochondria derived sequences." [GMOD:ea]	1905360	SOFA	SOFA	sequence	3	SO	ultracontig	mitochondrial_contig
SO:0001876	SO:0000148	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001921	"A contig of mitochondria derived sequences." [GMOD:ea]	1905361	SOFA	\N	sequence	3	SO	partial_genomic_sequence_assembly	mitochondrial_contig
SO:0001248	SO:0000353	\N	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0001921	"A contig of mitochondria derived sequences." [GMOD:ea]	4385879	SOFA	SOFA	sequence	6	SO	assembly	mitochondrial_contig
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001921	"A contig of mitochondria derived sequences." [GMOD:ea]	5876468	SOFA	SOFA	sequence	8	SO	region	mitochondrial_contig
SO:0001876	SO:0000719	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001921	"A contig of mitochondria derived sequences." [GMOD:ea]	2929766	SOFA	\N	sequence	4	SO	partial_genomic_sequence_assembly	mitochondrial_contig
SO:0000353	SO:0001876	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001921	"A contig of mitochondria derived sequences." [GMOD:ea]	4002826	\N	SOFA	sequence	5	SO	sequence_assembly	mitochondrial_contig
SO:0001410	SO:0001248	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001921	"A contig of mitochondria derived sequences." [GMOD:ea]	5059252	SOFA	SOFA	sequence	7	SO	experimental_feature	mitochondrial_contig
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001921	"A contig of mitochondria derived sequences." [GMOD:ea]	6409723	SOFA	SOFA	sequence	9	SO	sequence_feature	mitochondrial_contig
SO:0001922	\N	\N	"A scaffold composed of mitochondrial contigs." [GMOD:ea]	SO:0001922	"A scaffold composed of mitochondrial contigs." [GMOD:ea]	46785	\N	\N	sequence	0	SO	mitochondrial_supercontig	mitochondrial_supercontig
SO:0000148	SO:0001922	\N	"One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's." [SO:ls]	SO:0001922	"A scaffold composed of mitochondrial contigs." [GMOD:ea]	491581	\N	SOFA	sequence	1	SO	supercontig	mitochondrial_supercontig
SO:0000719	SO:0000148	\N	"An ordered and oriented set of scaffolds based on somewhat weaker sets of inferential evidence such as one set of mate pair reads together with supporting evidence from ESTs or location of markers from SNP or microsatellite maps, or cytogenetic localization of contained markers." [FB:WG]	SO:0001922	"A scaffold composed of mitochondrial contigs." [GMOD:ea]	1074229	SOFA	SOFA	sequence	2	SO	ultracontig	mitochondrial_supercontig
SO:0001876	SO:0000148	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001922	"A scaffold composed of mitochondrial contigs." [GMOD:ea]	1074230	SOFA	\N	sequence	2	SO	partial_genomic_sequence_assembly	mitochondrial_supercontig
SO:0001876	SO:0000719	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001922	"A scaffold composed of mitochondrial contigs." [GMOD:ea]	1905363	SOFA	\N	sequence	3	SO	partial_genomic_sequence_assembly	mitochondrial_supercontig
SO:0000353	SO:0001876	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001922	"A scaffold composed of mitochondrial contigs." [GMOD:ea]	2929769	\N	SOFA	sequence	4	SO	sequence_assembly	mitochondrial_supercontig
SO:0001248	SO:0000353	\N	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0001922	"A scaffold composed of mitochondrial contigs." [GMOD:ea]	3174012	SOFA	SOFA	sequence	5	SO	assembly	mitochondrial_supercontig
SO:0001410	SO:0001248	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001922	"A scaffold composed of mitochondrial contigs." [GMOD:ea]	4385880	SOFA	SOFA	sequence	6	SO	experimental_feature	mitochondrial_supercontig
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001922	"A scaffold composed of mitochondrial contigs." [GMOD:ea]	5407492	SOFA	SOFA	sequence	7	SO	region	mitochondrial_supercontig
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001922	"A scaffold composed of mitochondrial contigs." [GMOD:ea]	6146684	SOFA	SOFA	sequence	8	SO	sequence_feature	mitochondrial_supercontig
SO:0001923	\N	\N	"A non-coding RNA transcript, derived from the transcription of the telomere. These  transcripts contain G rich telomeric RNA repeats and RNA tracts corresponding to adjacent subtelomeric sequences. They are 100-9000 bases long." [PMID:22139915]	SO:0001923	"A non-coding RNA transcript, derived from the transcription of the telomere. These  transcripts contain G rich telomeric RNA repeats and RNA tracts corresponding to adjacent subtelomeric sequences. They are 100-9000 bases long." [PMID:22139915]	46786	\N	\N	sequence	0	SO	TERRA	TERRA
SO:0001927	SO:0001923	\N	"A non-coding transcript derived from the transcript of the telomere." [PMID:22139915]	SO:0001923	"A non-coding RNA transcript, derived from the transcription of the telomere. These  transcripts contain G rich telomeric RNA repeats and RNA tracts corresponding to adjacent subtelomeric sequences. They are 100-9000 bases long." [PMID:22139915]	491582	\N	\N	sequence	1	SO	telomeric_transcript	TERRA
SO:0000655	SO:0001927	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0001923	"A non-coding RNA transcript, derived from the transcription of the telomere. These  transcripts contain G rich telomeric RNA repeats and RNA tracts corresponding to adjacent subtelomeric sequences. They are 100-9000 bases long." [PMID:22139915]	1074231	\N	SOFA	sequence	2	SO	ncRNA	TERRA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001923	"A non-coding RNA transcript, derived from the transcription of the telomere. These  transcripts contain G rich telomeric RNA repeats and RNA tracts corresponding to adjacent subtelomeric sequences. They are 100-9000 bases long." [PMID:22139915]	1905365	SOFA	SOFA	sequence	3	SO	mature_transcript	TERRA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001923	"A non-coding RNA transcript, derived from the transcription of the telomere. These  transcripts contain G rich telomeric RNA repeats and RNA tracts corresponding to adjacent subtelomeric sequences. They are 100-9000 bases long." [PMID:22139915]	2929771	SOFA	SOFA	sequence	4	SO	transcript	TERRA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001923	"A non-coding RNA transcript, derived from the transcription of the telomere. These  transcripts contain G rich telomeric RNA repeats and RNA tracts corresponding to adjacent subtelomeric sequences. They are 100-9000 bases long." [PMID:22139915]	4002830	SOFA	SOFA	sequence	5	SO	gene_member_region	TERRA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001923	"A non-coding RNA transcript, derived from the transcription of the telomere. These  transcripts contain G rich telomeric RNA repeats and RNA tracts corresponding to adjacent subtelomeric sequences. They are 100-9000 bases long." [PMID:22139915]	4967031	SOFA	SOFA	sequence	6	SO	biological_region	TERRA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001923	"A non-coding RNA transcript, derived from the transcription of the telomere. These  transcripts contain G rich telomeric RNA repeats and RNA tracts corresponding to adjacent subtelomeric sequences. They are 100-9000 bases long." [PMID:22139915]	5741581	SOFA	SOFA	sequence	7	SO	region	TERRA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001923	"A non-coding RNA transcript, derived from the transcription of the telomere. These  transcripts contain G rich telomeric RNA repeats and RNA tracts corresponding to adjacent subtelomeric sequences. They are 100-9000 bases long." [PMID:22139915]	6311262	SOFA	SOFA	sequence	8	SO	sequence_feature	TERRA
SO:0001924	\N	\N	"A non coding RNA transcript, complementary to subtelomeric tract of TERRA transcript but devoid of the repeats." [PMID:2139915]	SO:0001924	"A non coding RNA transcript, complementary to subtelomeric tract of TERRA transcript but devoid of the repeats." [PMID:2139915]	46787	\N	\N	sequence	0	SO	ARRET	ARRET
SO:0001927	SO:0001924	\N	"A non-coding transcript derived from the transcript of the telomere." [PMID:22139915]	SO:0001924	"A non coding RNA transcript, complementary to subtelomeric tract of TERRA transcript but devoid of the repeats." [PMID:2139915]	491583	\N	\N	sequence	1	SO	telomeric_transcript	ARRET
SO:0000655	SO:0001927	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0001924	"A non coding RNA transcript, complementary to subtelomeric tract of TERRA transcript but devoid of the repeats." [PMID:2139915]	1074232	\N	SOFA	sequence	2	SO	ncRNA	ARRET
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001924	"A non coding RNA transcript, complementary to subtelomeric tract of TERRA transcript but devoid of the repeats." [PMID:2139915]	1905366	SOFA	SOFA	sequence	3	SO	mature_transcript	ARRET
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001924	"A non coding RNA transcript, complementary to subtelomeric tract of TERRA transcript but devoid of the repeats." [PMID:2139915]	2929772	SOFA	SOFA	sequence	4	SO	transcript	ARRET
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001924	"A non coding RNA transcript, complementary to subtelomeric tract of TERRA transcript but devoid of the repeats." [PMID:2139915]	4002831	SOFA	SOFA	sequence	5	SO	gene_member_region	ARRET
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001924	"A non coding RNA transcript, complementary to subtelomeric tract of TERRA transcript but devoid of the repeats." [PMID:2139915]	4967032	SOFA	SOFA	sequence	6	SO	biological_region	ARRET
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001924	"A non coding RNA transcript, complementary to subtelomeric tract of TERRA transcript but devoid of the repeats." [PMID:2139915]	5741582	SOFA	SOFA	sequence	7	SO	region	ARRET
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001924	"A non coding RNA transcript, complementary to subtelomeric tract of TERRA transcript but devoid of the repeats." [PMID:2139915]	6311263	SOFA	SOFA	sequence	8	SO	sequence_feature	ARRET
SO:0001925	\N	\N	"A non-coding RNA transcript, derived from the transcription of the telomere. These  transcripts consist of C rich repeats." [PMID:22139915]	SO:0001925	"A non-coding RNA transcript, derived from the transcription of the telomere. These  transcripts consist of C rich repeats." [PMID:22139915]	46788	\N	\N	sequence	0	SO	ARIA	ARIA
SO:0001927	SO:0001925	\N	"A non-coding transcript derived from the transcript of the telomere." [PMID:22139915]	SO:0001925	"A non-coding RNA transcript, derived from the transcription of the telomere. These  transcripts consist of C rich repeats." [PMID:22139915]	491584	\N	\N	sequence	1	SO	telomeric_transcript	ARIA
SO:0000655	SO:0001927	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0001925	"A non-coding RNA transcript, derived from the transcription of the telomere. These  transcripts consist of C rich repeats." [PMID:22139915]	1074233	\N	SOFA	sequence	2	SO	ncRNA	ARIA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001925	"A non-coding RNA transcript, derived from the transcription of the telomere. These  transcripts consist of C rich repeats." [PMID:22139915]	1905367	SOFA	SOFA	sequence	3	SO	mature_transcript	ARIA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001925	"A non-coding RNA transcript, derived from the transcription of the telomere. These  transcripts consist of C rich repeats." [PMID:22139915]	2929773	SOFA	SOFA	sequence	4	SO	transcript	ARIA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001925	"A non-coding RNA transcript, derived from the transcription of the telomere. These  transcripts consist of C rich repeats." [PMID:22139915]	4002832	SOFA	SOFA	sequence	5	SO	gene_member_region	ARIA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001925	"A non-coding RNA transcript, derived from the transcription of the telomere. These  transcripts consist of C rich repeats." [PMID:22139915]	4967033	SOFA	SOFA	sequence	6	SO	biological_region	ARIA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001925	"A non-coding RNA transcript, derived from the transcription of the telomere. These  transcripts consist of C rich repeats." [PMID:22139915]	5741583	SOFA	SOFA	sequence	7	SO	region	ARIA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001925	"A non-coding RNA transcript, derived from the transcription of the telomere. These  transcripts consist of C rich repeats." [PMID:22139915]	6311264	SOFA	SOFA	sequence	8	SO	sequence_feature	ARIA
SO:0001926	\N	\N	"A non-coding RNA transcript, derived from the transcription of the telomere. These  transcripts are antisense of ARRET transcripts." [PMID:22139915]	SO:0001926	"A non-coding RNA transcript, derived from the transcription of the telomere. These  transcripts are antisense of ARRET transcripts." [PMID:22139915]	46789	\N	\N	sequence	0	SO	anti_ARRET	anti_ARRET
SO:0001927	SO:0001926	\N	"A non-coding transcript derived from the transcript of the telomere." [PMID:22139915]	SO:0001926	"A non-coding RNA transcript, derived from the transcription of the telomere. These  transcripts are antisense of ARRET transcripts." [PMID:22139915]	491585	\N	\N	sequence	1	SO	telomeric_transcript	anti_ARRET
SO:0000655	SO:0001927	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0001926	"A non-coding RNA transcript, derived from the transcription of the telomere. These  transcripts are antisense of ARRET transcripts." [PMID:22139915]	1074234	\N	SOFA	sequence	2	SO	ncRNA	anti_ARRET
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001926	"A non-coding RNA transcript, derived from the transcription of the telomere. These  transcripts are antisense of ARRET transcripts." [PMID:22139915]	1905368	SOFA	SOFA	sequence	3	SO	mature_transcript	anti_ARRET
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001926	"A non-coding RNA transcript, derived from the transcription of the telomere. These  transcripts are antisense of ARRET transcripts." [PMID:22139915]	2929774	SOFA	SOFA	sequence	4	SO	transcript	anti_ARRET
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001926	"A non-coding RNA transcript, derived from the transcription of the telomere. These  transcripts are antisense of ARRET transcripts." [PMID:22139915]	4002833	SOFA	SOFA	sequence	5	SO	gene_member_region	anti_ARRET
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001926	"A non-coding RNA transcript, derived from the transcription of the telomere. These  transcripts are antisense of ARRET transcripts." [PMID:22139915]	4967034	SOFA	SOFA	sequence	6	SO	biological_region	anti_ARRET
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001926	"A non-coding RNA transcript, derived from the transcription of the telomere. These  transcripts are antisense of ARRET transcripts." [PMID:22139915]	5741584	SOFA	SOFA	sequence	7	SO	region	anti_ARRET
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001926	"A non-coding RNA transcript, derived from the transcription of the telomere. These  transcripts are antisense of ARRET transcripts." [PMID:22139915]	6311265	SOFA	SOFA	sequence	8	SO	sequence_feature	anti_ARRET
SO:0001927	\N	\N	"A non-coding transcript derived from the transcript of the telomere." [PMID:22139915]	SO:0001927	"A non-coding transcript derived from the transcript of the telomere." [PMID:22139915]	46790	\N	\N	sequence	0	SO	telomeric_transcript	telomeric_transcript
SO:0000655	SO:0001927	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0001927	"A non-coding transcript derived from the transcript of the telomere." [PMID:22139915]	491586	\N	SOFA	sequence	1	SO	ncRNA	telomeric_transcript
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0001927	"A non-coding transcript derived from the transcript of the telomere." [PMID:22139915]	1074235	SOFA	SOFA	sequence	2	SO	mature_transcript	telomeric_transcript
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001927	"A non-coding transcript derived from the transcript of the telomere." [PMID:22139915]	1905369	SOFA	SOFA	sequence	3	SO	transcript	telomeric_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001927	"A non-coding transcript derived from the transcript of the telomere." [PMID:22139915]	2929775	SOFA	SOFA	sequence	4	SO	gene_member_region	telomeric_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001927	"A non-coding transcript derived from the transcript of the telomere." [PMID:22139915]	4002834	SOFA	SOFA	sequence	5	SO	biological_region	telomeric_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001927	"A non-coding transcript derived from the transcript of the telomere." [PMID:22139915]	4967035	SOFA	SOFA	sequence	6	SO	region	telomeric_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001927	"A non-coding transcript derived from the transcript of the telomere." [PMID:22139915]	5741585	SOFA	SOFA	sequence	7	SO	sequence_feature	telomeric_transcript
SO:0001928	\N	\N	"A duplication of the distal region of a chromosome." [SO:bm]	SO:0001928	"A duplication of the distal region of a chromosome." [SO:bm]	46791	\N	\N	sequence	0	SO	distal_duplication	distal_duplication
SO:1000035	SO:0001928	\N	"An insertion which derives from, or is identical in sequence to, nucleotides present at a known location in the genome." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html, NCBI:th]	SO:0001928	"A duplication of the distal region of a chromosome." [SO:bm]	491587	\N	\N	sequence	1	SO	duplication	distal_duplication
SO:0000667	SO:1000035	\N	"The sequence of one or more nucleotides added between two adjacent nucleotides in the sequence." [SO:ke]	SO:0001928	"A duplication of the distal region of a chromosome." [SO:bm]	1074236	\N	DBVAR,SOFA	sequence	2	SO	insertion	distal_duplication
SO:0001059	SO:0000667	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0001928	"A duplication of the distal region of a chromosome." [SO:bm]	1905370	DBVAR,SOFA	SOFA	sequence	3	SO	sequence_alteration	distal_duplication
SO:0001411	SO:0000667	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001928	"A duplication of the distal region of a chromosome." [SO:bm]	1905371	DBVAR,SOFA	SOFA	sequence	3	SO	biological_region	distal_duplication
SO:0002072	SO:0001059	\N	"" []	SO:0001928	"A duplication of the distal region of a chromosome." [SO:bm]	2929776	SOFA	\N	sequence	4	SO	sequence_comparison	distal_duplication
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001928	"A duplication of the distal region of a chromosome." [SO:bm]	2929777	SOFA	SOFA	sequence	4	SO	region	distal_duplication
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001928	"A duplication of the distal region of a chromosome." [SO:bm]	4002835	\N	SOFA	sequence	5	SO	sequence_feature	distal_duplication
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001928	"A duplication of the distal region of a chromosome." [SO:bm]	4002836	SOFA	SOFA	sequence	5	SO	sequence_feature	distal_duplication
SO:0001929	\N	\N	"A sequencer read of a mitochondrial DNA sample." [GMOD:ea]	SO:0001929	"A sequencer read of a mitochondrial DNA sample." [GMOD:ea]	46792	\N	\N	sequence	0	SO	mitochondrial_DNA_read	mitochondrial_DNA_read
SO:0000150	SO:0001929	\N	"A sequence obtained from a single sequencing experiment. Typically a read is produced when a base calling program interprets information from a chromatogram trace file produced from a sequencing machine." [SO:rd]	SO:0001929	"A sequencer read of a mitochondrial DNA sample." [GMOD:ea]	491588	\N	SOFA	sequence	1	SO	read	mitochondrial_DNA_read
SO:0000143	SO:0000150	\N	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0001929	"A sequencer read of a mitochondrial DNA sample." [GMOD:ea]	1074237	SOFA	SOFA	sequence	2	SO	assembly_component	mitochondrial_DNA_read
SO:0000149	SO:0000150	\N	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	SO:0001929	"A sequencer read of a mitochondrial DNA sample." [GMOD:ea]	1074238	SOFA	SOFA	sequence	2	SO	contig	mitochondrial_DNA_read
SO:0001410	SO:0000143	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001929	"A sequencer read of a mitochondrial DNA sample." [GMOD:ea]	2929779	SOFA	SOFA	sequence	4	SO	experimental_feature	mitochondrial_DNA_read
SO:0000143	SO:0000149	\N	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0001929	"A sequencer read of a mitochondrial DNA sample." [GMOD:ea]	1905373	SOFA	SOFA	sequence	3	SO	assembly_component	mitochondrial_DNA_read
SO:0000148	SO:0000149	\N	"One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's." [SO:ls]	SO:0001929	"A sequencer read of a mitochondrial DNA sample." [GMOD:ea]	1905374	SOFA	SOFA	sequence	3	SO	supercontig	mitochondrial_DNA_read
SO:0000353	SO:0000149	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001929	"A sequencer read of a mitochondrial DNA sample." [GMOD:ea]	1905375	SOFA	SOFA	sequence	3	SO	sequence_assembly	mitochondrial_DNA_read
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001929	"A sequencer read of a mitochondrial DNA sample." [GMOD:ea]	6469777	SOFA	SOFA	sequence	9	SO	region	mitochondrial_DNA_read
SO:0000719	SO:0000148	\N	"An ordered and oriented set of scaffolds based on somewhat weaker sets of inferential evidence such as one set of mate pair reads together with supporting evidence from ESTs or location of markers from SNP or microsatellite maps, or cytogenetic localization of contained markers." [FB:WG]	SO:0001929	"A sequencer read of a mitochondrial DNA sample." [GMOD:ea]	2929780	SOFA	SOFA	sequence	4	SO	ultracontig	mitochondrial_DNA_read
SO:0001876	SO:0000148	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001929	"A sequencer read of a mitochondrial DNA sample." [GMOD:ea]	2929781	SOFA	\N	sequence	4	SO	partial_genomic_sequence_assembly	mitochondrial_DNA_read
SO:0001248	SO:0000353	\N	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0001929	"A sequencer read of a mitochondrial DNA sample." [GMOD:ea]	5407493	SOFA	SOFA	sequence	7	SO	assembly	mitochondrial_DNA_read
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001929	"A sequencer read of a mitochondrial DNA sample." [GMOD:ea]	6778573	SOFA	SOFA	sequence	10	SO	sequence_feature	mitochondrial_DNA_read
SO:0001876	SO:0000719	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001929	"A sequencer read of a mitochondrial DNA sample." [GMOD:ea]	4002838	SOFA	\N	sequence	5	SO	partial_genomic_sequence_assembly	mitochondrial_DNA_read
SO:0000353	SO:0001876	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001929	"A sequencer read of a mitochondrial DNA sample." [GMOD:ea]	4967036	\N	SOFA	sequence	6	SO	sequence_assembly	mitochondrial_DNA_read
SO:0001410	SO:0001248	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001929	"A sequencer read of a mitochondrial DNA sample." [GMOD:ea]	5876469	SOFA	SOFA	sequence	8	SO	experimental_feature	mitochondrial_DNA_read
SO:0001930	\N	\N	"A sequencer read of a chloroplast DNA sample." [GMOD:ea]	SO:0001930	"A sequencer read of a chloroplast DNA sample." [GMOD:ea]	46793	\N	\N	sequence	0	SO	chloroplast_DNA_read	chloroplast_DNA_read
SO:0000150	SO:0001930	\N	"A sequence obtained from a single sequencing experiment. Typically a read is produced when a base calling program interprets information from a chromatogram trace file produced from a sequencing machine." [SO:rd]	SO:0001930	"A sequencer read of a chloroplast DNA sample." [GMOD:ea]	491589	\N	SOFA	sequence	1	SO	read	chloroplast_DNA_read
SO:0000143	SO:0000150	\N	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0001930	"A sequencer read of a chloroplast DNA sample." [GMOD:ea]	1074239	SOFA	SOFA	sequence	2	SO	assembly_component	chloroplast_DNA_read
SO:0000149	SO:0000150	\N	"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases." [SO:ls]	SO:0001930	"A sequencer read of a chloroplast DNA sample." [GMOD:ea]	1074240	SOFA	SOFA	sequence	2	SO	contig	chloroplast_DNA_read
SO:0001410	SO:0000143	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001930	"A sequencer read of a chloroplast DNA sample." [GMOD:ea]	2929784	SOFA	SOFA	sequence	4	SO	experimental_feature	chloroplast_DNA_read
SO:0000143	SO:0000149	\N	"A region of known length which may be used to manufacture a longer region." [SO:ke]	SO:0001930	"A sequencer read of a chloroplast DNA sample." [GMOD:ea]	1905377	SOFA	SOFA	sequence	3	SO	assembly_component	chloroplast_DNA_read
SO:0000148	SO:0000149	\N	"One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's." [SO:ls]	SO:0001930	"A sequencer read of a chloroplast DNA sample." [GMOD:ea]	1905378	SOFA	SOFA	sequence	3	SO	supercontig	chloroplast_DNA_read
SO:0000353	SO:0000149	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001930	"A sequencer read of a chloroplast DNA sample." [GMOD:ea]	1905379	SOFA	SOFA	sequence	3	SO	sequence_assembly	chloroplast_DNA_read
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001930	"A sequencer read of a chloroplast DNA sample." [GMOD:ea]	6469778	SOFA	SOFA	sequence	9	SO	region	chloroplast_DNA_read
SO:0000719	SO:0000148	\N	"An ordered and oriented set of scaffolds based on somewhat weaker sets of inferential evidence such as one set of mate pair reads together with supporting evidence from ESTs or location of markers from SNP or microsatellite maps, or cytogenetic localization of contained markers." [FB:WG]	SO:0001930	"A sequencer read of a chloroplast DNA sample." [GMOD:ea]	2929785	SOFA	SOFA	sequence	4	SO	ultracontig	chloroplast_DNA_read
SO:0001876	SO:0000148	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001930	"A sequencer read of a chloroplast DNA sample." [GMOD:ea]	2929786	SOFA	\N	sequence	4	SO	partial_genomic_sequence_assembly	chloroplast_DNA_read
SO:0001248	SO:0000353	\N	"A region of the genome of known length that is composed by ordering and aligning two or more different regions." [SO:ke]	SO:0001930	"A sequencer read of a chloroplast DNA sample." [GMOD:ea]	5407494	SOFA	SOFA	sequence	7	SO	assembly	chloroplast_DNA_read
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001930	"A sequencer read of a chloroplast DNA sample." [GMOD:ea]	6778574	SOFA	SOFA	sequence	10	SO	sequence_feature	chloroplast_DNA_read
SO:0001876	SO:0000719	\N	"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's." [GMOD:ea]	SO:0001930	"A sequencer read of a chloroplast DNA sample." [GMOD:ea]	4002842	SOFA	\N	sequence	5	SO	partial_genomic_sequence_assembly	chloroplast_DNA_read
SO:0000353	SO:0001876	\N	"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences." [SO:ma]	SO:0001930	"A sequencer read of a chloroplast DNA sample." [GMOD:ea]	4967039	\N	SOFA	sequence	6	SO	sequence_assembly	chloroplast_DNA_read
SO:0001410	SO:0001248	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001930	"A sequencer read of a chloroplast DNA sample." [GMOD:ea]	5876470	SOFA	SOFA	sequence	8	SO	experimental_feature	chloroplast_DNA_read
SO:0001931	\N	\N	"Genomic DNA sequence produced from some base calling or alignment algorithm which uses aligned or assembled multiple gDNA sequences as input." [GMOD:ea]	SO:0001931	"Genomic DNA sequence produced from some base calling or alignment algorithm which uses aligned or assembled multiple gDNA sequences as input." [GMOD:ea]	46794	\N	\N	sequence	0	SO	consensus_gDNA	consensus_gDNA
SO:0000994	SO:0001931	\N	"" []	SO:0001931	"Genomic DNA sequence produced from some base calling or alignment algorithm which uses aligned or assembled multiple gDNA sequences as input." [GMOD:ea]	491590	\N	\N	sequence	1	SO	consensus_region	consensus_gDNA
SO:0001410	SO:0000994	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001931	"Genomic DNA sequence produced from some base calling or alignment algorithm which uses aligned or assembled multiple gDNA sequences as input." [GMOD:ea]	1074241	\N	SOFA	sequence	2	SO	experimental_feature	consensus_gDNA
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001931	"Genomic DNA sequence produced from some base calling or alignment algorithm which uses aligned or assembled multiple gDNA sequences as input." [GMOD:ea]	1905380	SOFA	SOFA	sequence	3	SO	region	consensus_gDNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001931	"Genomic DNA sequence produced from some base calling or alignment algorithm which uses aligned or assembled multiple gDNA sequences as input." [GMOD:ea]	2929788	SOFA	SOFA	sequence	4	SO	sequence_feature	consensus_gDNA
SO:0001932	\N	\N	"A terminal region of DNA sequence where the end of the region is not blunt ended and the exposed single strand terminates at the 5' end." [SO:ke]	SO:0001932	"A terminal region of DNA sequence where the end of the region is not blunt ended and the exposed single strand terminates at the 5' end." [SO:ke]	46795	\N	\N	sequence	0	SO	restriction_enzyme_five_prime_single_strand_overhang	restriction_enzyme_five_prime_single_strand_overhang
SO:0001695	SO:0001932	\N	"A terminal region of DNA sequence where the end of the region is not blunt ended." [SO:ke]	SO:0001932	"A terminal region of DNA sequence where the end of the region is not blunt ended and the exposed single strand terminates at the 5' end." [SO:ke]	491591	\N	\N	sequence	1	SO	restriction_enzyme_single_strand_overhang	restriction_enzyme_five_prime_single_strand_overhang
SO:0001692	SO:0001695	\N	"" []	SO:0001932	"A terminal region of DNA sequence where the end of the region is not blunt ended and the exposed single strand terminates at the 5' end." [SO:ke]	1074242	\N	\N	sequence	2	SO	sticky_end_restriction_enzyme_cleavage_site	restriction_enzyme_five_prime_single_strand_overhang
SO:0001954	SO:0001695	\N	"A region related to restriction enzyme function." [SO:ke]	SO:0001932	"A terminal region of DNA sequence where the end of the region is not blunt ended and the exposed single strand terminates at the 5' end." [SO:ke]	1074243	\N	\N	sequence	2	SO	restriction_enzyme_region	restriction_enzyme_five_prime_single_strand_overhang
SO:0001687	SO:0001692	\N	"The nucleotide region (usually a palindrome) that is recognized by a restriction enzyme. This may or may not be equal to the restriction enzyme binding site." [SO:ke]	SO:0001932	"A terminal region of DNA sequence where the end of the region is not blunt ended and the exposed single strand terminates at the 5' end." [SO:ke]	1905381	\N	\N	sequence	3	SO	restriction_enzyme_recognition_site	restriction_enzyme_five_prime_single_strand_overhang
SO:0001411	SO:0001954	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001932	"A terminal region of DNA sequence where the end of the region is not blunt ended and the exposed single strand terminates at the 5' end." [SO:ke]	4002845	\N	SOFA	sequence	5	SO	biological_region	restriction_enzyme_five_prime_single_strand_overhang
SO:0001954	SO:0001687	\N	"A region related to restriction enzyme function." [SO:ke]	SO:0001932	"A terminal region of DNA sequence where the end of the region is not blunt ended and the exposed single strand terminates at the 5' end." [SO:ke]	2929789	\N	\N	sequence	4	SO	restriction_enzyme_region	restriction_enzyme_five_prime_single_strand_overhang
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001932	"A terminal region of DNA sequence where the end of the region is not blunt ended and the exposed single strand terminates at the 5' end." [SO:ke]	4132340	SOFA	SOFA	sequence	6	SO	region	restriction_enzyme_five_prime_single_strand_overhang
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001932	"A terminal region of DNA sequence where the end of the region is not blunt ended and the exposed single strand terminates at the 5' end." [SO:ke]	5180767	SOFA	SOFA	sequence	7	SO	sequence_feature	restriction_enzyme_five_prime_single_strand_overhang
SO:0001933	\N	\N	"A terminal region of DNA sequence where the end of the region is not blunt ended and the exposed single strand terminates at the 3' end." [SO:ke]	SO:0001933	"A terminal region of DNA sequence where the end of the region is not blunt ended and the exposed single strand terminates at the 3' end." [SO:ke]	46796	\N	\N	sequence	0	SO	restriction_enzyme_three_prime_single_strand_overhang	restriction_enzyme_three_prime_single_strand_overhang
SO:0001695	SO:0001933	\N	"A terminal region of DNA sequence where the end of the region is not blunt ended." [SO:ke]	SO:0001933	"A terminal region of DNA sequence where the end of the region is not blunt ended and the exposed single strand terminates at the 3' end." [SO:ke]	491592	\N	\N	sequence	1	SO	restriction_enzyme_single_strand_overhang	restriction_enzyme_three_prime_single_strand_overhang
SO:0001692	SO:0001695	\N	"" []	SO:0001933	"A terminal region of DNA sequence where the end of the region is not blunt ended and the exposed single strand terminates at the 3' end." [SO:ke]	1074244	\N	\N	sequence	2	SO	sticky_end_restriction_enzyme_cleavage_site	restriction_enzyme_three_prime_single_strand_overhang
SO:0001954	SO:0001695	\N	"A region related to restriction enzyme function." [SO:ke]	SO:0001933	"A terminal region of DNA sequence where the end of the region is not blunt ended and the exposed single strand terminates at the 3' end." [SO:ke]	1074245	\N	\N	sequence	2	SO	restriction_enzyme_region	restriction_enzyme_three_prime_single_strand_overhang
SO:0001687	SO:0001692	\N	"The nucleotide region (usually a palindrome) that is recognized by a restriction enzyme. This may or may not be equal to the restriction enzyme binding site." [SO:ke]	SO:0001933	"A terminal region of DNA sequence where the end of the region is not blunt ended and the exposed single strand terminates at the 3' end." [SO:ke]	1905383	\N	\N	sequence	3	SO	restriction_enzyme_recognition_site	restriction_enzyme_three_prime_single_strand_overhang
SO:0001411	SO:0001954	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001933	"A terminal region of DNA sequence where the end of the region is not blunt ended and the exposed single strand terminates at the 3' end." [SO:ke]	4002847	\N	SOFA	sequence	5	SO	biological_region	restriction_enzyme_three_prime_single_strand_overhang
SO:0001954	SO:0001687	\N	"A region related to restriction enzyme function." [SO:ke]	SO:0001933	"A terminal region of DNA sequence where the end of the region is not blunt ended and the exposed single strand terminates at the 3' end." [SO:ke]	2929791	\N	\N	sequence	4	SO	restriction_enzyme_region	restriction_enzyme_three_prime_single_strand_overhang
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001933	"A terminal region of DNA sequence where the end of the region is not blunt ended and the exposed single strand terminates at the 3' end." [SO:ke]	4132341	SOFA	SOFA	sequence	6	SO	region	restriction_enzyme_three_prime_single_strand_overhang
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001933	"A terminal region of DNA sequence where the end of the region is not blunt ended and the exposed single strand terminates at the 3' end." [SO:ke]	5180768	SOFA	SOFA	sequence	7	SO	sequence_feature	restriction_enzyme_three_prime_single_strand_overhang
SO:0001934	\N	\N	"A repeat_region containing repeat_units of 1 bp that is repeated multiple times in tandem." [SO:ke]	SO:0001934	"A repeat_region containing repeat_units of 1 bp that is repeated multiple times in tandem." [SO:ke]	46797	\N	\N	sequence	0	SO	monomeric_repeat	monomeric_repeat
SO:0000705	SO:0001934	\N	"Two or more adjacent copies of a region (of length greater than 1)." [SO:ke]	SO:0001934	"A repeat_region containing repeat_units of 1 bp that is repeated multiple times in tandem." [SO:ke]	491593	\N	SOFA	sequence	1	SO	tandem_repeat	monomeric_repeat
SO:0000657	SO:0000705	\N	"A region of sequence containing one or more repeat units." [SO:ke]	SO:0001934	"A repeat_region containing repeat_units of 1 bp that is repeated multiple times in tandem." [SO:ke]	1074246	SOFA	SOFA	sequence	2	SO	repeat_region	monomeric_repeat
SO:0001411	SO:0000657	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001934	"A repeat_region containing repeat_units of 1 bp that is repeated multiple times in tandem." [SO:ke]	1905385	SOFA	SOFA	sequence	3	SO	biological_region	monomeric_repeat
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001934	"A repeat_region containing repeat_units of 1 bp that is repeated multiple times in tandem." [SO:ke]	2929793	SOFA	SOFA	sequence	4	SO	region	monomeric_repeat
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001934	"A repeat_region containing repeat_units of 1 bp that is repeated multiple times in tandem." [SO:ke]	4002849	SOFA	SOFA	sequence	5	SO	sequence_feature	monomeric_repeat
SO:0001935	\N	\N	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H3 protein is tri-methylated." [EBI:nj]	SO:0001935	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H3 protein is tri-methylated." [EBI:nj]	46798	\N	\N	sequence	0	SO	H3K20_trimethylation_site	H3K20_trimethylation_site
SO:0001701	SO:0001935	\N	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	SO:0001935	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H3 protein is tri-methylated." [EBI:nj]	491594	\N	\N	sequence	1	SO	histone_methylation_site	H3K20_trimethylation_site
SO:0001700	SO:0001701	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001935	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H3 protein is tri-methylated." [EBI:nj]	1074247	\N	\N	sequence	2	SO	histone_modification	H3K20_trimethylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001935	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H3 protein is tri-methylated." [EBI:nj]	1905386	\N	biosapiens	sequence	3	SO	post_translationally_modified_region	H3K20_trimethylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001935	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H3 protein is tri-methylated." [EBI:nj]	1905387	\N	SOFA	sequence	3	SO	epigenetically_modified_region	H3K20_trimethylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001935	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H3 protein is tri-methylated." [EBI:nj]	2929794	biosapiens	biosapiens	sequence	4	SO	biochemical_region_of_peptide	H3K20_trimethylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001935	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H3 protein is tri-methylated." [EBI:nj]	2929795	SOFA	SOFA	sequence	4	SO	biological_region	H3K20_trimethylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001935	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H3 protein is tri-methylated." [EBI:nj]	4002850	biosapiens	biosapiens	sequence	5	SO	polypeptide_motif	H3K20_trimethylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001935	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H3 protein is tri-methylated." [EBI:nj]	6948171	SOFA	SOFA	sequence	10	SO	region	H3K20_trimethylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001935	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H3 protein is tri-methylated." [EBI:nj]	4967042	biosapiens	biosapiens	sequence	6	SO	polypeptide_conserved_region	H3K20_trimethylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001935	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H3 protein is tri-methylated." [EBI:nj]	7029793	SOFA	SOFA	sequence	11	SO	sequence_feature	H3K20_trimethylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001935	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H3 protein is tri-methylated." [EBI:nj]	5741586	biosapiens	biosapiens,SOFA	sequence	7	SO	polypeptide_region	H3K20_trimethylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001935	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H3 protein is tri-methylated." [EBI:nj]	6311266	biosapiens,SOFA	SOFA	sequence	8	SO	polypeptide	H3K20_trimethylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001935	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H3 protein is tri-methylated." [EBI:nj]	6311267	biosapiens,SOFA	SOFA	sequence	8	SO	biological_region	H3K20_trimethylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001935	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H3 protein is tri-methylated." [EBI:nj]	6699495	SOFA	SOFA	sequence	9	SO	biological_region	H3K20_trimethylation_site
SO:0001936	\N	\N	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	SO:0001936	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	46799	\N	\N	sequence	0	SO	H3K36_acetylation_site	H3K36_acetylation_site
SO:0001973	SO:0001936	\N	"A histone 3 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	SO:0001936	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	491595	\N	\N	sequence	1	SO	histone_3_acetylation_site	H3K36_acetylation_site
SO:0001702	SO:0001973	\N	"A histone modification where the modification is the acylation of the residue." [SO:ke]	SO:0001936	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	1074248	\N	\N	sequence	2	SO	histone_acetylation_site	H3K36_acetylation_site
SO:0001700	SO:0001702	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001936	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	1905388	\N	\N	sequence	3	SO	histone_modification	H3K36_acetylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001936	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	2929796	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H3K36_acetylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001936	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	2929797	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H3K36_acetylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001936	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	4002852	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H3K36_acetylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001936	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	4002853	SOFA	SOFA	sequence	5	SO	biological_region	H3K36_acetylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001936	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	4967044	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H3K36_acetylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001936	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	7105148	SOFA	SOFA	sequence	11	SO	region	H3K36_acetylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001936	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	5741587	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H3K36_acetylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001936	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	7181726	SOFA	SOFA	sequence	12	SO	sequence_feature	H3K36_acetylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001936	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	6311268	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H3K36_acetylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001936	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	6699497	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H3K36_acetylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001936	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	6699498	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H3K36_acetylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001936	"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	6948172	SOFA	SOFA	sequence	10	SO	biological_region	H3K36_acetylation_site
SO:0001937	\N	\N	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H2B protein is acetylated." [EBI:nj]	SO:0001937	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H2B protein is acetylated." [EBI:nj]	46800	\N	\N	sequence	0	SO	H2BK12_acetylation_site	H2BK12_acetylation_site
SO:0002143	SO:0001937	\N	"A histone 2B modification where the modification is the acetylation of the residue." [ISBN:0815341059]	SO:0001937	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H2B protein is acetylated." [EBI:nj]	491596	\N	\N	sequence	1	SO	histone_2B_acetylation_site	H2BK12_acetylation_site
SO:0001702	SO:0002143	\N	"A histone modification where the modification is the acylation of the residue." [SO:ke]	SO:0001937	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H2B protein is acetylated." [EBI:nj]	1074249	\N	\N	sequence	2	SO	histone_acetylation_site	H2BK12_acetylation_site
SO:0001700	SO:0001702	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001937	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H2B protein is acetylated." [EBI:nj]	1905389	\N	\N	sequence	3	SO	histone_modification	H2BK12_acetylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001937	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H2B protein is acetylated." [EBI:nj]	2929798	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H2BK12_acetylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001937	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H2B protein is acetylated." [EBI:nj]	2929799	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H2BK12_acetylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001937	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H2B protein is acetylated." [EBI:nj]	4002854	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H2BK12_acetylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001937	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H2B protein is acetylated." [EBI:nj]	4002855	SOFA	SOFA	sequence	5	SO	biological_region	H2BK12_acetylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001937	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H2B protein is acetylated." [EBI:nj]	4967046	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H2BK12_acetylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001937	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H2B protein is acetylated." [EBI:nj]	7105149	SOFA	SOFA	sequence	11	SO	region	H2BK12_acetylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001937	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H2B protein is acetylated." [EBI:nj]	5741589	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H2BK12_acetylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001937	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H2B protein is acetylated." [EBI:nj]	7181727	SOFA	SOFA	sequence	12	SO	sequence_feature	H2BK12_acetylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001937	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H2B protein is acetylated." [EBI:nj]	6311269	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H2BK12_acetylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001937	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H2B protein is acetylated." [EBI:nj]	6699499	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H2BK12_acetylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001937	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H2B protein is acetylated." [EBI:nj]	6699500	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H2BK12_acetylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001937	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H2B protein is acetylated." [EBI:nj]	6948174	SOFA	SOFA	sequence	10	SO	biological_region	H2BK12_acetylation_site
SO:0001938	\N	\N	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	SO:0001938	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	46801	\N	\N	sequence	0	SO	H2AK5_acetylation_site	H2AK5_acetylation_site
SO:0002142	SO:0001938	\N	"A histone 2A modification where the modification is the acetylation of the residue." [ISBN:0815341059]	SO:0001938	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	491597	\N	\N	sequence	1	SO	histone_2A_acetylation_site	H2AK5_acetylation_site
SO:0001702	SO:0002142	\N	"A histone modification where the modification is the acylation of the residue." [SO:ke]	SO:0001938	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	1074250	\N	\N	sequence	2	SO	histone_acetylation_site	H2AK5_acetylation_site
SO:0001700	SO:0001702	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001938	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	1905390	\N	\N	sequence	3	SO	histone_modification	H2AK5_acetylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001938	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	2929800	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H2AK5_acetylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001938	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	2929801	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H2AK5_acetylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001938	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	4002856	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H2AK5_acetylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001938	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	4002857	SOFA	SOFA	sequence	5	SO	biological_region	H2AK5_acetylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001938	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	4967048	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H2AK5_acetylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001938	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	7105150	SOFA	SOFA	sequence	11	SO	region	H2AK5_acetylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001938	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	5741591	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H2AK5_acetylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001938	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	7181728	SOFA	SOFA	sequence	12	SO	sequence_feature	H2AK5_acetylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001938	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	6311270	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H2AK5_acetylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001938	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	6699501	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H2AK5_acetylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001938	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	6699502	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H2AK5_acetylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001938	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	6948176	SOFA	SOFA	sequence	10	SO	biological_region	H2AK5_acetylation_site
SO:0001939	\N	\N	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	SO:0001939	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	46802	\N	\N	sequence	0	SO	H4K12_acetylation_site	H4K12_acetylation_site
SO:0001972	SO:0001939	\N	"A histone 4 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	SO:0001939	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	491598	\N	\N	sequence	1	SO	histone_4_acetylation_site	H4K12_acetylation_site
SO:0001702	SO:0001972	\N	"A histone modification where the modification is the acylation of the residue." [SO:ke]	SO:0001939	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	1074251	\N	\N	sequence	2	SO	histone_acetylation_site	H4K12_acetylation_site
SO:0001700	SO:0001702	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001939	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	1905391	\N	\N	sequence	3	SO	histone_modification	H4K12_acetylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001939	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	2929802	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H4K12_acetylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001939	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	2929803	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H4K12_acetylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001939	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	4002858	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H4K12_acetylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001939	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	4002859	SOFA	SOFA	sequence	5	SO	biological_region	H4K12_acetylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001939	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	4967050	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H4K12_acetylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001939	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	7105151	SOFA	SOFA	sequence	11	SO	region	H4K12_acetylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001939	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	5741593	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H4K12_acetylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001939	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	7181729	SOFA	SOFA	sequence	12	SO	sequence_feature	H4K12_acetylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001939	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	6311271	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H4K12_acetylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001939	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	6699503	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H4K12_acetylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001939	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	6699504	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H4K12_acetylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001939	"A kind of histone modification site, whereby the 12th residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	6948178	SOFA	SOFA	sequence	10	SO	biological_region	H4K12_acetylation_site
SO:0001940	\N	\N	"A kind of histone modification site, whereby the 120th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj, http://dx.doi.org/10.4161/epi.6.5.15623]	SO:0001940	"A kind of histone modification site, whereby the 120th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj, http://dx.doi.org/10.4161/epi.6.5.15623]	46803	\N	\N	sequence	0	SO	H2BK120_acetylation_site	H2BK120_acetylation_site
SO:0002143	SO:0001940	\N	"A histone 2B modification where the modification is the acetylation of the residue." [ISBN:0815341059]	SO:0001940	"A kind of histone modification site, whereby the 120th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj, http://dx.doi.org/10.4161/epi.6.5.15623]	491599	\N	\N	sequence	1	SO	histone_2B_acetylation_site	H2BK120_acetylation_site
SO:0001702	SO:0002143	\N	"A histone modification where the modification is the acylation of the residue." [SO:ke]	SO:0001940	"A kind of histone modification site, whereby the 120th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj, http://dx.doi.org/10.4161/epi.6.5.15623]	1074252	\N	\N	sequence	2	SO	histone_acetylation_site	H2BK120_acetylation_site
SO:0001700	SO:0001702	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001940	"A kind of histone modification site, whereby the 120th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj, http://dx.doi.org/10.4161/epi.6.5.15623]	1905392	\N	\N	sequence	3	SO	histone_modification	H2BK120_acetylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001940	"A kind of histone modification site, whereby the 120th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj, http://dx.doi.org/10.4161/epi.6.5.15623]	2929804	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H2BK120_acetylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001940	"A kind of histone modification site, whereby the 120th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj, http://dx.doi.org/10.4161/epi.6.5.15623]	2929805	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H2BK120_acetylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001940	"A kind of histone modification site, whereby the 120th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj, http://dx.doi.org/10.4161/epi.6.5.15623]	4002860	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H2BK120_acetylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001940	"A kind of histone modification site, whereby the 120th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj, http://dx.doi.org/10.4161/epi.6.5.15623]	4002861	SOFA	SOFA	sequence	5	SO	biological_region	H2BK120_acetylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001940	"A kind of histone modification site, whereby the 120th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj, http://dx.doi.org/10.4161/epi.6.5.15623]	4967052	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H2BK120_acetylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001940	"A kind of histone modification site, whereby the 120th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj, http://dx.doi.org/10.4161/epi.6.5.15623]	7105152	SOFA	SOFA	sequence	11	SO	region	H2BK120_acetylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001940	"A kind of histone modification site, whereby the 120th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj, http://dx.doi.org/10.4161/epi.6.5.15623]	5741595	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H2BK120_acetylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001940	"A kind of histone modification site, whereby the 120th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj, http://dx.doi.org/10.4161/epi.6.5.15623]	7181730	SOFA	SOFA	sequence	12	SO	sequence_feature	H2BK120_acetylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001940	"A kind of histone modification site, whereby the 120th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj, http://dx.doi.org/10.4161/epi.6.5.15623]	6311272	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H2BK120_acetylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001940	"A kind of histone modification site, whereby the 120th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj, http://dx.doi.org/10.4161/epi.6.5.15623]	6699505	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H2BK120_acetylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001940	"A kind of histone modification site, whereby the 120th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj, http://dx.doi.org/10.4161/epi.6.5.15623]	6699506	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H2BK120_acetylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001940	"A kind of histone modification site, whereby the 120th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj, http://dx.doi.org/10.4161/epi.6.5.15623]	6948180	SOFA	SOFA	sequence	10	SO	biological_region	H2BK120_acetylation_site
SO:0001941	\N	\N	"A kind of histone modification site, whereby the 91st residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	SO:0001941	"A kind of histone modification site, whereby the 91st residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	46804	\N	\N	sequence	0	SO	H4K91_acetylation_site	H4K91_acetylation_site
SO:0001972	SO:0001941	\N	"A histone 4 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	SO:0001941	"A kind of histone modification site, whereby the 91st residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	491600	\N	\N	sequence	1	SO	histone_4_acetylation_site	H4K91_acetylation_site
SO:0001702	SO:0001972	\N	"A histone modification where the modification is the acylation of the residue." [SO:ke]	SO:0001941	"A kind of histone modification site, whereby the 91st residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	1074253	\N	\N	sequence	2	SO	histone_acetylation_site	H4K91_acetylation_site
SO:0001700	SO:0001702	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001941	"A kind of histone modification site, whereby the 91st residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	1905393	\N	\N	sequence	3	SO	histone_modification	H4K91_acetylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001941	"A kind of histone modification site, whereby the 91st residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	2929806	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H4K91_acetylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001941	"A kind of histone modification site, whereby the 91st residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	2929807	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H4K91_acetylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001941	"A kind of histone modification site, whereby the 91st residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	4002862	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H4K91_acetylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001941	"A kind of histone modification site, whereby the 91st residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	4002863	SOFA	SOFA	sequence	5	SO	biological_region	H4K91_acetylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001941	"A kind of histone modification site, whereby the 91st residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	4967054	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H4K91_acetylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001941	"A kind of histone modification site, whereby the 91st residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	7105153	SOFA	SOFA	sequence	11	SO	region	H4K91_acetylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001941	"A kind of histone modification site, whereby the 91st residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	5741597	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H4K91_acetylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001941	"A kind of histone modification site, whereby the 91st residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	7181731	SOFA	SOFA	sequence	12	SO	sequence_feature	H4K91_acetylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001941	"A kind of histone modification site, whereby the 91st residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	6311273	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H4K91_acetylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001941	"A kind of histone modification site, whereby the 91st residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	6699507	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H4K91_acetylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001941	"A kind of histone modification site, whereby the 91st residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	6699508	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H4K91_acetylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001941	"A kind of histone modification site, whereby the 91st residue (a lysine), from the start of the H4 histone protein is acetylated." [EBI:nj]	6948182	SOFA	SOFA	sequence	10	SO	biological_region	H4K91_acetylation_site
SO:0001942	\N	\N	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	SO:0001942	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	46805	\N	\N	sequence	0	SO	H2BK20_acetylation_site	H2BK20_acetylation_site
SO:0002143	SO:0001942	\N	"A histone 2B modification where the modification is the acetylation of the residue." [ISBN:0815341059]	SO:0001942	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	491601	\N	\N	sequence	1	SO	histone_2B_acetylation_site	H2BK20_acetylation_site
SO:0001702	SO:0002143	\N	"A histone modification where the modification is the acylation of the residue." [SO:ke]	SO:0001942	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	1074254	\N	\N	sequence	2	SO	histone_acetylation_site	H2BK20_acetylation_site
SO:0001700	SO:0001702	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001942	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	1905394	\N	\N	sequence	3	SO	histone_modification	H2BK20_acetylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001942	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	2929808	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H2BK20_acetylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001942	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	2929809	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H2BK20_acetylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001942	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	4002864	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H2BK20_acetylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001942	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	4002865	SOFA	SOFA	sequence	5	SO	biological_region	H2BK20_acetylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001942	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	4967056	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H2BK20_acetylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001942	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	7105154	SOFA	SOFA	sequence	11	SO	region	H2BK20_acetylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001942	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	5741599	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H2BK20_acetylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001942	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	7181732	SOFA	SOFA	sequence	12	SO	sequence_feature	H2BK20_acetylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001942	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	6311274	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H2BK20_acetylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001942	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	6699509	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H2BK20_acetylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001942	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	6699510	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H2BK20_acetylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001942	"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	6948184	SOFA	SOFA	sequence	10	SO	biological_region	H2BK20_acetylation_site
SO:0001943	\N	\N	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	SO:0001943	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	46806	\N	\N	sequence	0	SO	H3K4_acetylation_site	H3K4_acetylation_site
SO:0001973	SO:0001943	\N	"A histone 3 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	SO:0001943	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	491602	\N	\N	sequence	1	SO	histone_3_acetylation_site	H3K4_acetylation_site
SO:0001702	SO:0001973	\N	"A histone modification where the modification is the acylation of the residue." [SO:ke]	SO:0001943	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	1074255	\N	\N	sequence	2	SO	histone_acetylation_site	H3K4_acetylation_site
SO:0001700	SO:0001702	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001943	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	1905395	\N	\N	sequence	3	SO	histone_modification	H3K4_acetylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001943	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	2929810	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H3K4_acetylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001943	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	2929811	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H3K4_acetylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001943	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	4002866	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H3K4_acetylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001943	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	4002867	SOFA	SOFA	sequence	5	SO	biological_region	H3K4_acetylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001943	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	4967058	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H3K4_acetylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001943	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	7105155	SOFA	SOFA	sequence	11	SO	region	H3K4_acetylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001943	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	5741601	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H3K4_acetylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001943	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	7181733	SOFA	SOFA	sequence	12	SO	sequence_feature	H3K4_acetylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001943	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	6311275	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H3K4_acetylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001943	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	6699511	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H3K4_acetylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001943	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	6699512	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H3K4_acetylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001943	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	6948186	SOFA	SOFA	sequence	10	SO	biological_region	H3K4_acetylation_site
SO:0001944	\N	\N	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	SO:0001944	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	46807	\N	\N	sequence	0	SO	H2AK9_acetylation_site	H2AK9_acetylation_site
SO:0002142	SO:0001944	\N	"A histone 2A modification where the modification is the acetylation of the residue." [ISBN:0815341059]	SO:0001944	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	491603	\N	\N	sequence	1	SO	histone_2A_acetylation_site	H2AK9_acetylation_site
SO:0001702	SO:0002142	\N	"A histone modification where the modification is the acylation of the residue." [SO:ke]	SO:0001944	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	1074256	\N	\N	sequence	2	SO	histone_acetylation_site	H2AK9_acetylation_site
SO:0001700	SO:0001702	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001944	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	1905396	\N	\N	sequence	3	SO	histone_modification	H2AK9_acetylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001944	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	2929812	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H2AK9_acetylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001944	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	2929813	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H2AK9_acetylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001944	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	4002868	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H2AK9_acetylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001944	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	4002869	SOFA	SOFA	sequence	5	SO	biological_region	H2AK9_acetylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001944	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	4967060	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H2AK9_acetylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001944	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	7105156	SOFA	SOFA	sequence	11	SO	region	H2AK9_acetylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001944	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	5741603	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H2AK9_acetylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001944	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	7181734	SOFA	SOFA	sequence	12	SO	sequence_feature	H2AK9_acetylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001944	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	6311276	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H2AK9_acetylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001944	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	6699513	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H2AK9_acetylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001944	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	6699514	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H2AK9_acetylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001944	"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H2A histone protein is acetylated." [EBI:nj]	6948188	SOFA	SOFA	sequence	10	SO	biological_region	H2AK9_acetylation_site
SO:0001945	\N	\N	"A kind of histone modification site, whereby the 56th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	SO:0001945	"A kind of histone modification site, whereby the 56th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	46808	\N	\N	sequence	0	SO	H3K56_acetylation_site	H3K56_acetylation_site
SO:0001973	SO:0001945	\N	"A histone 3 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	SO:0001945	"A kind of histone modification site, whereby the 56th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	491604	\N	\N	sequence	1	SO	histone_3_acetylation_site	H3K56_acetylation_site
SO:0001702	SO:0001973	\N	"A histone modification where the modification is the acylation of the residue." [SO:ke]	SO:0001945	"A kind of histone modification site, whereby the 56th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	1074257	\N	\N	sequence	2	SO	histone_acetylation_site	H3K56_acetylation_site
SO:0001700	SO:0001702	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001945	"A kind of histone modification site, whereby the 56th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	1905397	\N	\N	sequence	3	SO	histone_modification	H3K56_acetylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001945	"A kind of histone modification site, whereby the 56th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	2929814	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H3K56_acetylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001945	"A kind of histone modification site, whereby the 56th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	2929815	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H3K56_acetylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001945	"A kind of histone modification site, whereby the 56th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	4002870	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H3K56_acetylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001945	"A kind of histone modification site, whereby the 56th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	4002871	SOFA	SOFA	sequence	5	SO	biological_region	H3K56_acetylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001945	"A kind of histone modification site, whereby the 56th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	4967062	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H3K56_acetylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001945	"A kind of histone modification site, whereby the 56th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	7105157	SOFA	SOFA	sequence	11	SO	region	H3K56_acetylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001945	"A kind of histone modification site, whereby the 56th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	5741605	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H3K56_acetylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001945	"A kind of histone modification site, whereby the 56th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	7181735	SOFA	SOFA	sequence	12	SO	sequence_feature	H3K56_acetylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001945	"A kind of histone modification site, whereby the 56th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	6311277	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H3K56_acetylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001945	"A kind of histone modification site, whereby the 56th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	6699515	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H3K56_acetylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001945	"A kind of histone modification site, whereby the 56th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	6699516	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H3K56_acetylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001945	"A kind of histone modification site, whereby the 56th residue (a lysine), from the start of the H3 histone protein is acetylated." [EBI:nj]	6948190	SOFA	SOFA	sequence	10	SO	biological_region	H3K56_acetylation_site
SO:0001946	\N	\N	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	SO:0001946	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	46809	\N	\N	sequence	0	SO	H2BK15_acetylation_site	H2BK15_acetylation_site
SO:0002143	SO:0001946	\N	"A histone 2B modification where the modification is the acetylation of the residue." [ISBN:0815341059]	SO:0001946	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	491605	\N	\N	sequence	1	SO	histone_2B_acetylation_site	H2BK15_acetylation_site
SO:0001702	SO:0002143	\N	"A histone modification where the modification is the acylation of the residue." [SO:ke]	SO:0001946	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	1074258	\N	\N	sequence	2	SO	histone_acetylation_site	H2BK15_acetylation_site
SO:0001700	SO:0001702	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001946	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	1905398	\N	\N	sequence	3	SO	histone_modification	H2BK15_acetylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001946	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	2929816	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H2BK15_acetylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001946	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	2929817	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H2BK15_acetylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001946	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	4002872	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H2BK15_acetylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001946	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	4002873	SOFA	SOFA	sequence	5	SO	biological_region	H2BK15_acetylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001946	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	4967064	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H2BK15_acetylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001946	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	7105158	SOFA	SOFA	sequence	11	SO	region	H2BK15_acetylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001946	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	5741607	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H2BK15_acetylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001946	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	7181736	SOFA	SOFA	sequence	12	SO	sequence_feature	H2BK15_acetylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001946	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	6311278	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H2BK15_acetylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001946	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	6699517	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H2BK15_acetylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001946	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	6699518	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H2BK15_acetylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001946	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2B histone protein is acetylated." [EBI:nj]	6948192	SOFA	SOFA	sequence	10	SO	biological_region	H2BK15_acetylation_site
SO:0001947	\N	\N	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is mono-methylated." [EBI:nj]	SO:0001947	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is mono-methylated." [EBI:nj]	46810	\N	\N	sequence	0	SO	H3R2_monomethylation_site	H3R2_monomethylation_site
SO:0001701	SO:0001947	\N	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	SO:0001947	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is mono-methylated." [EBI:nj]	491606	\N	\N	sequence	1	SO	histone_methylation_site	H3R2_monomethylation_site
SO:0001700	SO:0001701	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001947	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is mono-methylated." [EBI:nj]	1074259	\N	\N	sequence	2	SO	histone_modification	H3R2_monomethylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001947	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is mono-methylated." [EBI:nj]	1905399	\N	biosapiens	sequence	3	SO	post_translationally_modified_region	H3R2_monomethylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001947	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is mono-methylated." [EBI:nj]	1905400	\N	SOFA	sequence	3	SO	epigenetically_modified_region	H3R2_monomethylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001947	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is mono-methylated." [EBI:nj]	2929818	biosapiens	biosapiens	sequence	4	SO	biochemical_region_of_peptide	H3R2_monomethylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001947	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is mono-methylated." [EBI:nj]	2929819	SOFA	SOFA	sequence	4	SO	biological_region	H3R2_monomethylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001947	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is mono-methylated." [EBI:nj]	4002874	biosapiens	biosapiens	sequence	5	SO	polypeptide_motif	H3R2_monomethylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001947	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is mono-methylated." [EBI:nj]	6948194	SOFA	SOFA	sequence	10	SO	region	H3R2_monomethylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001947	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is mono-methylated." [EBI:nj]	4967066	biosapiens	biosapiens	sequence	6	SO	polypeptide_conserved_region	H3R2_monomethylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001947	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is mono-methylated." [EBI:nj]	7029794	SOFA	SOFA	sequence	11	SO	sequence_feature	H3R2_monomethylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001947	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is mono-methylated." [EBI:nj]	5741609	biosapiens	biosapiens,SOFA	sequence	7	SO	polypeptide_region	H3R2_monomethylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001947	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is mono-methylated." [EBI:nj]	6311279	biosapiens,SOFA	SOFA	sequence	8	SO	polypeptide	H3R2_monomethylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001947	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is mono-methylated." [EBI:nj]	6311280	biosapiens,SOFA	SOFA	sequence	8	SO	biological_region	H3R2_monomethylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001947	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is mono-methylated." [EBI:nj]	6699519	SOFA	SOFA	sequence	9	SO	biological_region	H3R2_monomethylation_site
SO:0001948	\N	\N	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is di-methylated." [EBI:nj]	SO:0001948	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is di-methylated." [EBI:nj]	46811	\N	\N	sequence	0	SO	H3R2_dimethylation_site	H3R2_dimethylation_site
SO:0001701	SO:0001948	\N	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	SO:0001948	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is di-methylated." [EBI:nj]	491607	\N	\N	sequence	1	SO	histone_methylation_site	H3R2_dimethylation_site
SO:0001700	SO:0001701	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001948	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is di-methylated." [EBI:nj]	1074260	\N	\N	sequence	2	SO	histone_modification	H3R2_dimethylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001948	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is di-methylated." [EBI:nj]	1905401	\N	biosapiens	sequence	3	SO	post_translationally_modified_region	H3R2_dimethylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001948	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is di-methylated." [EBI:nj]	1905402	\N	SOFA	sequence	3	SO	epigenetically_modified_region	H3R2_dimethylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001948	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is di-methylated." [EBI:nj]	2929820	biosapiens	biosapiens	sequence	4	SO	biochemical_region_of_peptide	H3R2_dimethylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001948	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is di-methylated." [EBI:nj]	2929821	SOFA	SOFA	sequence	4	SO	biological_region	H3R2_dimethylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001948	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is di-methylated." [EBI:nj]	4002876	biosapiens	biosapiens	sequence	5	SO	polypeptide_motif	H3R2_dimethylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001948	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is di-methylated." [EBI:nj]	6948195	SOFA	SOFA	sequence	10	SO	region	H3R2_dimethylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001948	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is di-methylated." [EBI:nj]	4967068	biosapiens	biosapiens	sequence	6	SO	polypeptide_conserved_region	H3R2_dimethylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001948	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is di-methylated." [EBI:nj]	7029795	SOFA	SOFA	sequence	11	SO	sequence_feature	H3R2_dimethylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001948	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is di-methylated." [EBI:nj]	5741610	biosapiens	biosapiens,SOFA	sequence	7	SO	polypeptide_region	H3R2_dimethylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001948	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is di-methylated." [EBI:nj]	6311281	biosapiens,SOFA	SOFA	sequence	8	SO	polypeptide	H3R2_dimethylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001948	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is di-methylated." [EBI:nj]	6311282	biosapiens,SOFA	SOFA	sequence	8	SO	biological_region	H3R2_dimethylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001948	"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is di-methylated." [EBI:nj]	6699521	SOFA	SOFA	sequence	9	SO	biological_region	H3R2_dimethylation_site
SO:0001949	\N	\N	"A kind of histone modification site, whereby the 3nd residue (an arginine), from the start of the H4 protein is di-methylated." [EBI:nj]	SO:0001949	"A kind of histone modification site, whereby the 3nd residue (an arginine), from the start of the H4 protein is di-methylated." [EBI:nj]	46812	\N	\N	sequence	0	SO	H4R3_dimethylation_site	H4R3_dimethylation_site
SO:0001701	SO:0001949	\N	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	SO:0001949	"A kind of histone modification site, whereby the 3nd residue (an arginine), from the start of the H4 protein is di-methylated." [EBI:nj]	491608	\N	\N	sequence	1	SO	histone_methylation_site	H4R3_dimethylation_site
SO:0001700	SO:0001701	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001949	"A kind of histone modification site, whereby the 3nd residue (an arginine), from the start of the H4 protein is di-methylated." [EBI:nj]	1074261	\N	\N	sequence	2	SO	histone_modification	H4R3_dimethylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001949	"A kind of histone modification site, whereby the 3nd residue (an arginine), from the start of the H4 protein is di-methylated." [EBI:nj]	1905403	\N	biosapiens	sequence	3	SO	post_translationally_modified_region	H4R3_dimethylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001949	"A kind of histone modification site, whereby the 3nd residue (an arginine), from the start of the H4 protein is di-methylated." [EBI:nj]	1905404	\N	SOFA	sequence	3	SO	epigenetically_modified_region	H4R3_dimethylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001949	"A kind of histone modification site, whereby the 3nd residue (an arginine), from the start of the H4 protein is di-methylated." [EBI:nj]	2929822	biosapiens	biosapiens	sequence	4	SO	biochemical_region_of_peptide	H4R3_dimethylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001949	"A kind of histone modification site, whereby the 3nd residue (an arginine), from the start of the H4 protein is di-methylated." [EBI:nj]	2929823	SOFA	SOFA	sequence	4	SO	biological_region	H4R3_dimethylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001949	"A kind of histone modification site, whereby the 3nd residue (an arginine), from the start of the H4 protein is di-methylated." [EBI:nj]	4002878	biosapiens	biosapiens	sequence	5	SO	polypeptide_motif	H4R3_dimethylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001949	"A kind of histone modification site, whereby the 3nd residue (an arginine), from the start of the H4 protein is di-methylated." [EBI:nj]	6948196	SOFA	SOFA	sequence	10	SO	region	H4R3_dimethylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001949	"A kind of histone modification site, whereby the 3nd residue (an arginine), from the start of the H4 protein is di-methylated." [EBI:nj]	4967070	biosapiens	biosapiens	sequence	6	SO	polypeptide_conserved_region	H4R3_dimethylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001949	"A kind of histone modification site, whereby the 3nd residue (an arginine), from the start of the H4 protein is di-methylated." [EBI:nj]	7029796	SOFA	SOFA	sequence	11	SO	sequence_feature	H4R3_dimethylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001949	"A kind of histone modification site, whereby the 3nd residue (an arginine), from the start of the H4 protein is di-methylated." [EBI:nj]	5741611	biosapiens	biosapiens,SOFA	sequence	7	SO	polypeptide_region	H4R3_dimethylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001949	"A kind of histone modification site, whereby the 3nd residue (an arginine), from the start of the H4 protein is di-methylated." [EBI:nj]	6311283	biosapiens,SOFA	SOFA	sequence	8	SO	polypeptide	H4R3_dimethylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001949	"A kind of histone modification site, whereby the 3nd residue (an arginine), from the start of the H4 protein is di-methylated." [EBI:nj]	6311284	biosapiens,SOFA	SOFA	sequence	8	SO	biological_region	H4R3_dimethylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001949	"A kind of histone modification site, whereby the 3nd residue (an arginine), from the start of the H4 protein is di-methylated." [EBI:nj]	6699523	SOFA	SOFA	sequence	9	SO	biological_region	H4R3_dimethylation_site
SO:0001950	\N	\N	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H4 protein is tri-methylated." [EBI:nj]	SO:0001950	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H4 protein is tri-methylated." [EBI:nj]	46813	\N	\N	sequence	0	SO	H4K4_trimethylation_site	H4K4_trimethylation_site
SO:0001701	SO:0001950	\N	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	SO:0001950	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H4 protein is tri-methylated." [EBI:nj]	491609	\N	\N	sequence	1	SO	histone_methylation_site	H4K4_trimethylation_site
SO:0001700	SO:0001701	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001950	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H4 protein is tri-methylated." [EBI:nj]	1074262	\N	\N	sequence	2	SO	histone_modification	H4K4_trimethylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001950	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H4 protein is tri-methylated." [EBI:nj]	1905405	\N	biosapiens	sequence	3	SO	post_translationally_modified_region	H4K4_trimethylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001950	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H4 protein is tri-methylated." [EBI:nj]	1905406	\N	SOFA	sequence	3	SO	epigenetically_modified_region	H4K4_trimethylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001950	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H4 protein is tri-methylated." [EBI:nj]	2929824	biosapiens	biosapiens	sequence	4	SO	biochemical_region_of_peptide	H4K4_trimethylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001950	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H4 protein is tri-methylated." [EBI:nj]	2929825	SOFA	SOFA	sequence	4	SO	biological_region	H4K4_trimethylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001950	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H4 protein is tri-methylated." [EBI:nj]	4002880	biosapiens	biosapiens	sequence	5	SO	polypeptide_motif	H4K4_trimethylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001950	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H4 protein is tri-methylated." [EBI:nj]	6948197	SOFA	SOFA	sequence	10	SO	region	H4K4_trimethylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001950	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H4 protein is tri-methylated." [EBI:nj]	4967072	biosapiens	biosapiens	sequence	6	SO	polypeptide_conserved_region	H4K4_trimethylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001950	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H4 protein is tri-methylated." [EBI:nj]	7029797	SOFA	SOFA	sequence	11	SO	sequence_feature	H4K4_trimethylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001950	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H4 protein is tri-methylated." [EBI:nj]	5741612	biosapiens	biosapiens,SOFA	sequence	7	SO	polypeptide_region	H4K4_trimethylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001950	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H4 protein is tri-methylated." [EBI:nj]	6311285	biosapiens,SOFA	SOFA	sequence	8	SO	polypeptide	H4K4_trimethylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001950	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H4 protein is tri-methylated." [EBI:nj]	6311286	biosapiens,SOFA	SOFA	sequence	8	SO	biological_region	H4K4_trimethylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001950	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H4 protein is tri-methylated." [EBI:nj]	6699525	SOFA	SOFA	sequence	9	SO	biological_region	H4K4_trimethylation_site
SO:0001951	\N	\N	"A kind of histone modification site, whereby the 23rd residue (a lysine), from the start of the H3 protein is di-methylated." [EBI:nj]	SO:0001951	"A kind of histone modification site, whereby the 23rd residue (a lysine), from the start of the H3 protein is di-methylated." [EBI:nj]	46814	\N	\N	sequence	0	SO	H3K23_dimethylation_site	H3K23_dimethylation_site
SO:0001701	SO:0001951	\N	"A histone modification site where the modification is the methylation of the residue." [SO:ke]	SO:0001951	"A kind of histone modification site, whereby the 23rd residue (a lysine), from the start of the H3 protein is di-methylated." [EBI:nj]	491610	\N	\N	sequence	1	SO	histone_methylation_site	H3K23_dimethylation_site
SO:0001700	SO:0001701	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001951	"A kind of histone modification site, whereby the 23rd residue (a lysine), from the start of the H3 protein is di-methylated." [EBI:nj]	1074263	\N	\N	sequence	2	SO	histone_modification	H3K23_dimethylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001951	"A kind of histone modification site, whereby the 23rd residue (a lysine), from the start of the H3 protein is di-methylated." [EBI:nj]	1905407	\N	biosapiens	sequence	3	SO	post_translationally_modified_region	H3K23_dimethylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001951	"A kind of histone modification site, whereby the 23rd residue (a lysine), from the start of the H3 protein is di-methylated." [EBI:nj]	1905408	\N	SOFA	sequence	3	SO	epigenetically_modified_region	H3K23_dimethylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001951	"A kind of histone modification site, whereby the 23rd residue (a lysine), from the start of the H3 protein is di-methylated." [EBI:nj]	2929826	biosapiens	biosapiens	sequence	4	SO	biochemical_region_of_peptide	H3K23_dimethylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001951	"A kind of histone modification site, whereby the 23rd residue (a lysine), from the start of the H3 protein is di-methylated." [EBI:nj]	2929827	SOFA	SOFA	sequence	4	SO	biological_region	H3K23_dimethylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001951	"A kind of histone modification site, whereby the 23rd residue (a lysine), from the start of the H3 protein is di-methylated." [EBI:nj]	4002882	biosapiens	biosapiens	sequence	5	SO	polypeptide_motif	H3K23_dimethylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001951	"A kind of histone modification site, whereby the 23rd residue (a lysine), from the start of the H3 protein is di-methylated." [EBI:nj]	6948198	SOFA	SOFA	sequence	10	SO	region	H3K23_dimethylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001951	"A kind of histone modification site, whereby the 23rd residue (a lysine), from the start of the H3 protein is di-methylated." [EBI:nj]	4967074	biosapiens	biosapiens	sequence	6	SO	polypeptide_conserved_region	H3K23_dimethylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001951	"A kind of histone modification site, whereby the 23rd residue (a lysine), from the start of the H3 protein is di-methylated." [EBI:nj]	7029798	SOFA	SOFA	sequence	11	SO	sequence_feature	H3K23_dimethylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001951	"A kind of histone modification site, whereby the 23rd residue (a lysine), from the start of the H3 protein is di-methylated." [EBI:nj]	5741613	biosapiens	biosapiens,SOFA	sequence	7	SO	polypeptide_region	H3K23_dimethylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001951	"A kind of histone modification site, whereby the 23rd residue (a lysine), from the start of the H3 protein is di-methylated." [EBI:nj]	6311287	biosapiens,SOFA	SOFA	sequence	8	SO	polypeptide	H3K23_dimethylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001951	"A kind of histone modification site, whereby the 23rd residue (a lysine), from the start of the H3 protein is di-methylated." [EBI:nj]	6311288	biosapiens,SOFA	SOFA	sequence	8	SO	biological_region	H3K23_dimethylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001951	"A kind of histone modification site, whereby the 23rd residue (a lysine), from the start of the H3 protein is di-methylated." [EBI:nj]	6699527	SOFA	SOFA	sequence	9	SO	biological_region	H3K23_dimethylation_site
SO:0001952	\N	\N	"A region immediately adjacent to a promoter which may or may not contain transcription factor binding sites." [EBI:nj]	SO:0001952	"A region immediately adjacent to a promoter which may or may not contain transcription factor binding sites." [EBI:nj]	46815	\N	\N	sequence	0	SO	promoter_flanking_region	promoter_flanking_region
SO:0001055	SO:0001952	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0001952	"A region immediately adjacent to a promoter which may or may not contain transcription factor binding sites." [EBI:nj]	491611	\N	SOFA	sequence	1	SO	transcriptional_cis_regulatory_region	promoter_flanking_region
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0001952	"A region immediately adjacent to a promoter which may or may not contain transcription factor binding sites." [EBI:nj]	1074264	SOFA	SOFA	sequence	2	SO	transcription_regulatory_region	promoter_flanking_region
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0001952	"A region immediately adjacent to a promoter which may or may not contain transcription factor binding sites." [EBI:nj]	1905409	SOFA	SOFA	sequence	3	SO	regulatory_region	promoter_flanking_region
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0001952	"A region immediately adjacent to a promoter which may or may not contain transcription factor binding sites." [EBI:nj]	2929828	SOFA	SOFA	sequence	4	SO	gene_member_region	promoter_flanking_region
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001952	"A region immediately adjacent to a promoter which may or may not contain transcription factor binding sites." [EBI:nj]	4002884	SOFA	SOFA	sequence	5	SO	biological_region	promoter_flanking_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001952	"A region immediately adjacent to a promoter which may or may not contain transcription factor binding sites." [EBI:nj]	4967076	SOFA	SOFA	sequence	6	SO	region	promoter_flanking_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001952	"A region immediately adjacent to a promoter which may or may not contain transcription factor binding sites." [EBI:nj]	5741614	SOFA	SOFA	sequence	7	SO	sequence_feature	promoter_flanking_region
SO:0001953	\N	\N	"A region of DNA sequence formed from the ligation of two sticky ends where the palindrome is broken and no longer comprises the recognition site and thus cannot be re-cut by the restriction enzymes used to create the sticky ends." [SO:ke]	SO:0001953	"A region of DNA sequence formed from the ligation of two sticky ends where the palindrome is broken and no longer comprises the recognition site and thus cannot be re-cut by the restriction enzymes used to create the sticky ends." [SO:ke]	46816	\N	\N	sequence	0	SO	restriction_enzyme_assembly_scar	restriction_enzyme_assembly_scar
SO:0001954	SO:0001953	\N	"A region related to restriction enzyme function." [SO:ke]	SO:0001953	"A region of DNA sequence formed from the ligation of two sticky ends where the palindrome is broken and no longer comprises the recognition site and thus cannot be re-cut by the restriction enzymes used to create the sticky ends." [SO:ke]	491612	\N	\N	sequence	1	SO	restriction_enzyme_region	restriction_enzyme_assembly_scar
SO:0001411	SO:0001954	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001953	"A region of DNA sequence formed from the ligation of two sticky ends where the palindrome is broken and no longer comprises the recognition site and thus cannot be re-cut by the restriction enzymes used to create the sticky ends." [SO:ke]	1074265	\N	SOFA	sequence	2	SO	biological_region	restriction_enzyme_assembly_scar
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001953	"A region of DNA sequence formed from the ligation of two sticky ends where the palindrome is broken and no longer comprises the recognition site and thus cannot be re-cut by the restriction enzymes used to create the sticky ends." [SO:ke]	1905410	SOFA	SOFA	sequence	3	SO	region	restriction_enzyme_assembly_scar
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001953	"A region of DNA sequence formed from the ligation of two sticky ends where the palindrome is broken and no longer comprises the recognition site and thus cannot be re-cut by the restriction enzymes used to create the sticky ends." [SO:ke]	2929829	SOFA	SOFA	sequence	4	SO	sequence_feature	restriction_enzyme_assembly_scar
SO:0001954	\N	\N	"A region related to restriction enzyme function." [SO:ke]	SO:0001954	"A region related to restriction enzyme function." [SO:ke]	46817	\N	\N	sequence	0	SO	restriction_enzyme_region	restriction_enzyme_region
SO:0001411	SO:0001954	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001954	"A region related to restriction enzyme function." [SO:ke]	491613	\N	SOFA	sequence	1	SO	biological_region	restriction_enzyme_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001954	"A region related to restriction enzyme function." [SO:ke]	1074266	SOFA	SOFA	sequence	2	SO	region	restriction_enzyme_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001954	"A region related to restriction enzyme function." [SO:ke]	1905411	SOFA	SOFA	sequence	3	SO	sequence_feature	restriction_enzyme_region
SO:0001955	\N	\N	"A polypeptide region that proves structure in a protein that affects the stability of the protein." [SO:ke]	SO:0001955	"A polypeptide region that proves structure in a protein that affects the stability of the protein." [SO:ke]	46818	\N	\N	sequence	0	SO	protein_stability_element	protein_stability_element
SO:0000839	SO:0001955	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001955	"A polypeptide region that proves structure in a protein that affects the stability of the protein." [SO:ke]	491614	\N	biosapiens,SOFA	sequence	1	SO	polypeptide_region	protein_stability_element
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001955	"A polypeptide region that proves structure in a protein that affects the stability of the protein." [SO:ke]	1074267	biosapiens,SOFA	SOFA	sequence	2	SO	polypeptide	protein_stability_element
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001955	"A polypeptide region that proves structure in a protein that affects the stability of the protein." [SO:ke]	1074268	biosapiens,SOFA	SOFA	sequence	2	SO	biological_region	protein_stability_element
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001955	"A polypeptide region that proves structure in a protein that affects the stability of the protein." [SO:ke]	1905412	SOFA	SOFA	sequence	3	SO	biological_region	protein_stability_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001955	"A polypeptide region that proves structure in a protein that affects the stability of the protein." [SO:ke]	2929830	SOFA	SOFA	sequence	4	SO	region	protein_stability_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001955	"A polypeptide region that proves structure in a protein that affects the stability of the protein." [SO:ke]	3174015	SOFA	SOFA	sequence	5	SO	sequence_feature	protein_stability_element
SO:0001956	\N	\N	"A polypeptide_region that  codes for a protease cleavage site." [SO:ke]	SO:0001956	"A polypeptide_region that  codes for a protease cleavage site." [SO:ke]	46819	\N	\N	sequence	0	SO	protease_site	protease_site
SO:0000839	SO:0001956	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001956	"A polypeptide_region that  codes for a protease cleavage site." [SO:ke]	491615	\N	biosapiens,SOFA	sequence	1	SO	polypeptide_region	protease_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001956	"A polypeptide_region that  codes for a protease cleavage site." [SO:ke]	1074269	biosapiens,SOFA	SOFA	sequence	2	SO	polypeptide	protease_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001956	"A polypeptide_region that  codes for a protease cleavage site." [SO:ke]	1074270	biosapiens,SOFA	SOFA	sequence	2	SO	biological_region	protease_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001956	"A polypeptide_region that  codes for a protease cleavage site." [SO:ke]	1905414	SOFA	SOFA	sequence	3	SO	biological_region	protease_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001956	"A polypeptide_region that  codes for a protease cleavage site." [SO:ke]	2929832	SOFA	SOFA	sequence	4	SO	region	protease_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001956	"A polypeptide_region that  codes for a protease cleavage site." [SO:ke]	3174016	SOFA	SOFA	sequence	5	SO	sequence_feature	protease_site
SO:0001958	\N	\N	"A kind of intron whereby the excision is driven by lariat formation." [SO:ke]	SO:0001958	"A kind of intron whereby the excision is driven by lariat formation." [SO:ke]	46820	\N	\N	sequence	0	SO	lariat_intron	lariat_intron
SO:0000188	SO:0001958	\N	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001958	"A kind of intron whereby the excision is driven by lariat formation." [SO:ke]	491616	\N	SOFA	sequence	1	SO	intron	lariat_intron
SO:0000835	SO:0000188	\N	"A part of a primary transcript." [SO:ke]	SO:0001958	"A kind of intron whereby the excision is driven by lariat formation." [SO:ke]	1074271	SOFA	SOFA	sequence	2	SO	primary_transcript_region	lariat_intron
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001958	"A kind of intron whereby the excision is driven by lariat formation." [SO:ke]	1905416	SOFA	SOFA	sequence	3	SO	primary_transcript	lariat_intron
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0001958	"A kind of intron whereby the excision is driven by lariat formation." [SO:ke]	1905417	SOFA	SOFA	sequence	3	SO	transcript_region	lariat_intron
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001958	"A kind of intron whereby the excision is driven by lariat formation." [SO:ke]	2929834	SOFA	SOFA	sequence	4	SO	transcript	lariat_intron
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001958	"A kind of intron whereby the excision is driven by lariat formation." [SO:ke]	2929835	SOFA	SOFA	sequence	4	SO	transcript	lariat_intron
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001958	"A kind of intron whereby the excision is driven by lariat formation." [SO:ke]	2929836	SOFA	SOFA	sequence	4	SO	biological_region	lariat_intron
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001958	"A kind of intron whereby the excision is driven by lariat formation." [SO:ke]	4002885	SOFA	SOFA	sequence	5	SO	gene_member_region	lariat_intron
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001958	"A kind of intron whereby the excision is driven by lariat formation." [SO:ke]	5741615	SOFA	SOFA	sequence	7	SO	region	lariat_intron
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001958	"A kind of intron whereby the excision is driven by lariat formation." [SO:ke]	4967077	SOFA	SOFA	sequence	6	SO	biological_region	lariat_intron
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001958	"A kind of intron whereby the excision is driven by lariat formation." [SO:ke]	5996466	SOFA	SOFA	sequence	8	SO	sequence_feature	lariat_intron
SO:0001959	\N	\N	"A cis-regulatory element, conserved sequence YYC+1TTTYY, and spans -2 to +6 relative to +1 TSS. It is present in most ribosomal protein genes in Drosophila and mammals but not in the yeast Saccharomyces cerevisiae. Resembles the initiator (TCAKTY in Drosophila) but functionally distinct from initiator." [PMID:20801935, SO:myl]	SO:0001959	"A cis-regulatory element, conserved sequence YYC+1TTTYY, and spans -2 to +6 relative to +1 TSS. It is present in most ribosomal protein genes in Drosophila and mammals but not in the yeast Saccharomyces cerevisiae. Resembles the initiator (TCAKTY in Drosophila) but functionally distinct from initiator." [PMID:20801935, SO:myl]	46821	\N	\N	sequence	0	SO	TCT_motif	TCT_motif
SO:0001660	SO:0001959	\N	"" []	SO:0001959	"A cis-regulatory element, conserved sequence YYC+1TTTYY, and spans -2 to +6 relative to +1 TSS. It is present in most ribosomal protein genes in Drosophila and mammals but not in the yeast Saccharomyces cerevisiae. Resembles the initiator (TCAKTY in Drosophila) but functionally distinct from initiator." [PMID:20801935, SO:myl]	491617	\N	\N	sequence	1	SO	core_promoter_element	TCT_motif
SO:0001659	SO:0001660	\N	"" []	SO:0001959	"A cis-regulatory element, conserved sequence YYC+1TTTYY, and spans -2 to +6 relative to +1 TSS. It is present in most ribosomal protein genes in Drosophila and mammals but not in the yeast Saccharomyces cerevisiae. Resembles the initiator (TCAKTY in Drosophila) but functionally distinct from initiator." [PMID:20801935, SO:myl]	1074272	\N	\N	sequence	2	SO	promoter_element	TCT_motif
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001959	"A cis-regulatory element, conserved sequence YYC+1TTTYY, and spans -2 to +6 relative to +1 TSS. It is present in most ribosomal protein genes in Drosophila and mammals but not in the yeast Saccharomyces cerevisiae. Resembles the initiator (TCAKTY in Drosophila) but functionally distinct from initiator." [PMID:20801935, SO:myl]	1905418	\N	\N	sequence	3	SO	DNA_motif	TCT_motif
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001959	"A cis-regulatory element, conserved sequence YYC+1TTTYY, and spans -2 to +6 relative to +1 TSS. It is present in most ribosomal protein genes in Drosophila and mammals but not in the yeast Saccharomyces cerevisiae. Resembles the initiator (TCAKTY in Drosophila) but functionally distinct from initiator." [PMID:20801935, SO:myl]	2929837	\N	SOFA	sequence	4	SO	nucleotide_motif	TCT_motif
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001959	"A cis-regulatory element, conserved sequence YYC+1TTTYY, and spans -2 to +6 relative to +1 TSS. It is present in most ribosomal protein genes in Drosophila and mammals but not in the yeast Saccharomyces cerevisiae. Resembles the initiator (TCAKTY in Drosophila) but functionally distinct from initiator." [PMID:20801935, SO:myl]	4002887	SOFA	SOFA	sequence	5	SO	sequence_motif	TCT_motif
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001959	"A cis-regulatory element, conserved sequence YYC+1TTTYY, and spans -2 to +6 relative to +1 TSS. It is present in most ribosomal protein genes in Drosophila and mammals but not in the yeast Saccharomyces cerevisiae. Resembles the initiator (TCAKTY in Drosophila) but functionally distinct from initiator." [PMID:20801935, SO:myl]	4967079	SOFA	SOFA	sequence	6	SO	biological_region	TCT_motif
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001959	"A cis-regulatory element, conserved sequence YYC+1TTTYY, and spans -2 to +6 relative to +1 TSS. It is present in most ribosomal protein genes in Drosophila and mammals but not in the yeast Saccharomyces cerevisiae. Resembles the initiator (TCAKTY in Drosophila) but functionally distinct from initiator." [PMID:20801935, SO:myl]	5741616	SOFA	SOFA	sequence	7	SO	region	TCT_motif
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001959	"A cis-regulatory element, conserved sequence YYC+1TTTYY, and spans -2 to +6 relative to +1 TSS. It is present in most ribosomal protein genes in Drosophila and mammals but not in the yeast Saccharomyces cerevisiae. Resembles the initiator (TCAKTY in Drosophila) but functionally distinct from initiator." [PMID:20801935, SO:myl]	6311289	SOFA	SOFA	sequence	8	SO	sequence_feature	TCT_motif
SO:0001960	\N	\N	"A modified DNA cytosine base feature, modified by a hydroxymethyl group at the 5 carbon." [SO:ke]	SO:0001960	"A modified DNA cytosine base feature, modified by a hydroxymethyl group at the 5 carbon." [SO:ke]	46822	\N	\N	sequence	0	SO	5_hydroxymethylcytosine	5_hydroxymethylcytosine
SO:0000114	SO:0001960	\N	"A methylated deoxy-cytosine." [SO:ke]	SO:0001960	"A modified DNA cytosine base feature, modified by a hydroxymethyl group at the 5 carbon." [SO:ke]	491618	\N	SOFA	sequence	1	SO	methylated_cytosine	5_hydroxymethylcytosine
SO:0000306	SO:0000114	\N	"A nucleotide modified by methylation." [SO:ke]	SO:0001960	"A modified DNA cytosine base feature, modified by a hydroxymethyl group at the 5 carbon." [SO:ke]	1074273	SOFA	SOFA	sequence	2	SO	methylated_DNA_base_feature	5_hydroxymethylcytosine
SO:0001963	SO:0000114	\N	"A modified cytosine DNA base feature." [SO:ke]	SO:0001960	"A modified DNA cytosine base feature, modified by a hydroxymethyl group at the 5 carbon." [SO:ke]	1074274	SOFA	\N	sequence	2	SO	modified_cytosine	5_hydroxymethylcytosine
SO:0000305	SO:0000306	\N	"A modified nucleotide, i.e. a nucleotide other than A, T, C. G." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001960	"A modified DNA cytosine base feature, modified by a hydroxymethyl group at the 5 carbon." [SO:ke]	1905419	SOFA	SOFA	sequence	3	SO	modified_DNA_base	5_hydroxymethylcytosine
SO:0000305	SO:0001963	\N	"A modified nucleotide, i.e. a nucleotide other than A, T, C. G." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001960	"A modified DNA cytosine base feature, modified by a hydroxymethyl group at the 5 carbon." [SO:ke]	1905420	\N	SOFA	sequence	3	SO	modified_DNA_base	5_hydroxymethylcytosine
SO:0001236	SO:0000305	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001960	"A modified DNA cytosine base feature, modified by a hydroxymethyl group at the 5 carbon." [SO:ke]	2929838	SOFA	SOFA	sequence	4	SO	base	5_hydroxymethylcytosine
SO:0001720	SO:0000305	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001960	"A modified DNA cytosine base feature, modified by a hydroxymethyl group at the 5 carbon." [SO:ke]	2929839	SOFA	SOFA	sequence	4	SO	epigenetically_modified_region	5_hydroxymethylcytosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001960	"A modified DNA cytosine base feature, modified by a hydroxymethyl group at the 5 carbon." [SO:ke]	4002888	SOFA	SOFA	sequence	5	SO	biological_region	5_hydroxymethylcytosine
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001960	"A modified DNA cytosine base feature, modified by a hydroxymethyl group at the 5 carbon." [SO:ke]	4002889	SOFA	SOFA	sequence	5	SO	biological_region	5_hydroxymethylcytosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001960	"A modified DNA cytosine base feature, modified by a hydroxymethyl group at the 5 carbon." [SO:ke]	4967080	SOFA	SOFA	sequence	6	SO	region	5_hydroxymethylcytosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001960	"A modified DNA cytosine base feature, modified by a hydroxymethyl group at the 5 carbon." [SO:ke]	5741617	SOFA	SOFA	sequence	7	SO	sequence_feature	5_hydroxymethylcytosine
SO:0001961	\N	\N	"A modified DNA cytosine base feature, modified by a formyl group at the 5 carbon." [SO:ke]	SO:0001961	"A modified DNA cytosine base feature, modified by a formyl group at the 5 carbon." [SO:ke]	46823	\N	\N	sequence	0	SO	5_formylcytosine	5_formylcytosine
SO:0001963	SO:0001961	\N	"A modified cytosine DNA base feature." [SO:ke]	SO:0001961	"A modified DNA cytosine base feature, modified by a formyl group at the 5 carbon." [SO:ke]	491619	\N	\N	sequence	1	SO	modified_cytosine	5_formylcytosine
SO:0000305	SO:0001963	\N	"A modified nucleotide, i.e. a nucleotide other than A, T, C. G." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001961	"A modified DNA cytosine base feature, modified by a formyl group at the 5 carbon." [SO:ke]	1074275	\N	SOFA	sequence	2	SO	modified_DNA_base	5_formylcytosine
SO:0001236	SO:0000305	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001961	"A modified DNA cytosine base feature, modified by a formyl group at the 5 carbon." [SO:ke]	1905421	SOFA	SOFA	sequence	3	SO	base	5_formylcytosine
SO:0001720	SO:0000305	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001961	"A modified DNA cytosine base feature, modified by a formyl group at the 5 carbon." [SO:ke]	1905422	SOFA	SOFA	sequence	3	SO	epigenetically_modified_region	5_formylcytosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001961	"A modified DNA cytosine base feature, modified by a formyl group at the 5 carbon." [SO:ke]	2929840	SOFA	SOFA	sequence	4	SO	biological_region	5_formylcytosine
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001961	"A modified DNA cytosine base feature, modified by a formyl group at the 5 carbon." [SO:ke]	2929841	SOFA	SOFA	sequence	4	SO	biological_region	5_formylcytosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001961	"A modified DNA cytosine base feature, modified by a formyl group at the 5 carbon." [SO:ke]	4002890	SOFA	SOFA	sequence	5	SO	region	5_formylcytosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001961	"A modified DNA cytosine base feature, modified by a formyl group at the 5 carbon." [SO:ke]	4967081	SOFA	SOFA	sequence	6	SO	sequence_feature	5_formylcytosine
SO:0001962	\N	\N	"A modified adenine DNA base feature." [SO:ke]	SO:0001962	"A modified adenine DNA base feature." [SO:ke]	46824	\N	\N	sequence	0	SO	modified_adenine	modified_adenine
SO:0000305	SO:0001962	\N	"A modified nucleotide, i.e. a nucleotide other than A, T, C. G." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001962	"A modified adenine DNA base feature." [SO:ke]	491620	\N	SOFA	sequence	1	SO	modified_DNA_base	modified_adenine
SO:0001236	SO:0000305	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001962	"A modified adenine DNA base feature." [SO:ke]	1074276	SOFA	SOFA	sequence	2	SO	base	modified_adenine
SO:0001720	SO:0000305	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001962	"A modified adenine DNA base feature." [SO:ke]	1074277	SOFA	SOFA	sequence	2	SO	epigenetically_modified_region	modified_adenine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001962	"A modified adenine DNA base feature." [SO:ke]	1905423	SOFA	SOFA	sequence	3	SO	biological_region	modified_adenine
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001962	"A modified adenine DNA base feature." [SO:ke]	1905424	SOFA	SOFA	sequence	3	SO	biological_region	modified_adenine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001962	"A modified adenine DNA base feature." [SO:ke]	2929842	SOFA	SOFA	sequence	4	SO	region	modified_adenine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001962	"A modified adenine DNA base feature." [SO:ke]	4002891	SOFA	SOFA	sequence	5	SO	sequence_feature	modified_adenine
SO:0001963	\N	\N	"A modified cytosine DNA base feature." [SO:ke]	SO:0001963	"A modified cytosine DNA base feature." [SO:ke]	46825	\N	\N	sequence	0	SO	modified_cytosine	modified_cytosine
SO:0000305	SO:0001963	\N	"A modified nucleotide, i.e. a nucleotide other than A, T, C. G." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001963	"A modified cytosine DNA base feature." [SO:ke]	491621	\N	SOFA	sequence	1	SO	modified_DNA_base	modified_cytosine
SO:0001236	SO:0000305	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001963	"A modified cytosine DNA base feature." [SO:ke]	1074278	SOFA	SOFA	sequence	2	SO	base	modified_cytosine
SO:0001720	SO:0000305	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001963	"A modified cytosine DNA base feature." [SO:ke]	1074279	SOFA	SOFA	sequence	2	SO	epigenetically_modified_region	modified_cytosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001963	"A modified cytosine DNA base feature." [SO:ke]	1905425	SOFA	SOFA	sequence	3	SO	biological_region	modified_cytosine
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001963	"A modified cytosine DNA base feature." [SO:ke]	1905426	SOFA	SOFA	sequence	3	SO	biological_region	modified_cytosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001963	"A modified cytosine DNA base feature." [SO:ke]	2929843	SOFA	SOFA	sequence	4	SO	region	modified_cytosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001963	"A modified cytosine DNA base feature." [SO:ke]	4002892	SOFA	SOFA	sequence	5	SO	sequence_feature	modified_cytosine
SO:0001964	\N	\N	"A modified guanine DNA base feature." [SO:ke]	SO:0001964	"A modified guanine DNA base feature." [SO:ke]	46826	\N	\N	sequence	0	SO	modified_guanine	modified_guanine
SO:0000305	SO:0001964	\N	"A modified nucleotide, i.e. a nucleotide other than A, T, C. G." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001964	"A modified guanine DNA base feature." [SO:ke]	491622	\N	SOFA	sequence	1	SO	modified_DNA_base	modified_guanine
SO:0001236	SO:0000305	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001964	"A modified guanine DNA base feature." [SO:ke]	1074280	SOFA	SOFA	sequence	2	SO	base	modified_guanine
SO:0001720	SO:0000305	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001964	"A modified guanine DNA base feature." [SO:ke]	1074281	SOFA	SOFA	sequence	2	SO	epigenetically_modified_region	modified_guanine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001964	"A modified guanine DNA base feature." [SO:ke]	1905427	SOFA	SOFA	sequence	3	SO	biological_region	modified_guanine
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001964	"A modified guanine DNA base feature." [SO:ke]	1905428	SOFA	SOFA	sequence	3	SO	biological_region	modified_guanine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001964	"A modified guanine DNA base feature." [SO:ke]	2929844	SOFA	SOFA	sequence	4	SO	region	modified_guanine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001964	"A modified guanine DNA base feature." [SO:ke]	4002893	SOFA	SOFA	sequence	5	SO	sequence_feature	modified_guanine
SO:0001965	\N	\N	"A modified DNA guanine base,at the 8 carbon, often the product of DNA damage." [SO:ke]	SO:0001965	"A modified DNA guanine base,at the 8 carbon, often the product of DNA damage." [SO:ke]	46827	\N	\N	sequence	0	SO	8_oxoguanine	8_oxoguanine
SO:0001964	SO:0001965	\N	"A modified guanine DNA base feature." [SO:ke]	SO:0001965	"A modified DNA guanine base,at the 8 carbon, often the product of DNA damage." [SO:ke]	491623	\N	\N	sequence	1	SO	modified_guanine	8_oxoguanine
SO:0000305	SO:0001964	\N	"A modified nucleotide, i.e. a nucleotide other than A, T, C. G." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001965	"A modified DNA guanine base,at the 8 carbon, often the product of DNA damage." [SO:ke]	1074282	\N	SOFA	sequence	2	SO	modified_DNA_base	8_oxoguanine
SO:0001236	SO:0000305	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001965	"A modified DNA guanine base,at the 8 carbon, often the product of DNA damage." [SO:ke]	1905429	SOFA	SOFA	sequence	3	SO	base	8_oxoguanine
SO:0001720	SO:0000305	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001965	"A modified DNA guanine base,at the 8 carbon, often the product of DNA damage." [SO:ke]	1905430	SOFA	SOFA	sequence	3	SO	epigenetically_modified_region	8_oxoguanine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001965	"A modified DNA guanine base,at the 8 carbon, often the product of DNA damage." [SO:ke]	2929845	SOFA	SOFA	sequence	4	SO	biological_region	8_oxoguanine
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001965	"A modified DNA guanine base,at the 8 carbon, often the product of DNA damage." [SO:ke]	2929846	SOFA	SOFA	sequence	4	SO	biological_region	8_oxoguanine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001965	"A modified DNA guanine base,at the 8 carbon, often the product of DNA damage." [SO:ke]	4002894	SOFA	SOFA	sequence	5	SO	region	8_oxoguanine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001965	"A modified DNA guanine base,at the 8 carbon, often the product of DNA damage." [SO:ke]	4967082	SOFA	SOFA	sequence	6	SO	sequence_feature	8_oxoguanine
SO:0001966	\N	\N	"A modified DNA cytosine base feature, modified by a carboxy group at the 5 carbon." [SO:ke]	SO:0001966	"A modified DNA cytosine base feature, modified by a carboxy group at the 5 carbon." [SO:ke]	46828	\N	\N	sequence	0	SO	5_carboxylcytosine	5_carboxylcytosine
SO:0001963	SO:0001966	\N	"A modified cytosine DNA base feature." [SO:ke]	SO:0001966	"A modified DNA cytosine base feature, modified by a carboxy group at the 5 carbon." [SO:ke]	491624	\N	\N	sequence	1	SO	modified_cytosine	5_carboxylcytosine
SO:0000305	SO:0001963	\N	"A modified nucleotide, i.e. a nucleotide other than A, T, C. G." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001966	"A modified DNA cytosine base feature, modified by a carboxy group at the 5 carbon." [SO:ke]	1074283	\N	SOFA	sequence	2	SO	modified_DNA_base	5_carboxylcytosine
SO:0001236	SO:0000305	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001966	"A modified DNA cytosine base feature, modified by a carboxy group at the 5 carbon." [SO:ke]	1905431	SOFA	SOFA	sequence	3	SO	base	5_carboxylcytosine
SO:0001720	SO:0000305	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001966	"A modified DNA cytosine base feature, modified by a carboxy group at the 5 carbon." [SO:ke]	1905432	SOFA	SOFA	sequence	3	SO	epigenetically_modified_region	5_carboxylcytosine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001966	"A modified DNA cytosine base feature, modified by a carboxy group at the 5 carbon." [SO:ke]	2929847	SOFA	SOFA	sequence	4	SO	biological_region	5_carboxylcytosine
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001966	"A modified DNA cytosine base feature, modified by a carboxy group at the 5 carbon." [SO:ke]	2929848	SOFA	SOFA	sequence	4	SO	biological_region	5_carboxylcytosine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001966	"A modified DNA cytosine base feature, modified by a carboxy group at the 5 carbon." [SO:ke]	4002895	SOFA	SOFA	sequence	5	SO	region	5_carboxylcytosine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001966	"A modified DNA cytosine base feature, modified by a carboxy group at the 5 carbon." [SO:ke]	4967083	SOFA	SOFA	sequence	6	SO	sequence_feature	5_carboxylcytosine
SO:0001967	\N	\N	"A modified DNA adenine base,at the 8 carbon, often the product of DNA damage." [SO:ke]	SO:0001967	"A modified DNA adenine base,at the 8 carbon, often the product of DNA damage." [SO:ke]	46829	\N	\N	sequence	0	SO	8_oxoadenine	8_oxoadenine
SO:0001962	SO:0001967	\N	"A modified adenine DNA base feature." [SO:ke]	SO:0001967	"A modified DNA adenine base,at the 8 carbon, often the product of DNA damage." [SO:ke]	491625	\N	\N	sequence	1	SO	modified_adenine	8_oxoadenine
SO:0000305	SO:0001962	\N	"A modified nucleotide, i.e. a nucleotide other than A, T, C. G." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001967	"A modified DNA adenine base,at the 8 carbon, often the product of DNA damage." [SO:ke]	1074284	\N	SOFA	sequence	2	SO	modified_DNA_base	8_oxoadenine
SO:0001236	SO:0000305	\N	"A base is a sequence feature that corresponds to a single unit of a nucleotide polymer." [SO:ke]	SO:0001967	"A modified DNA adenine base,at the 8 carbon, often the product of DNA damage." [SO:ke]	1905433	SOFA	SOFA	sequence	3	SO	base	8_oxoadenine
SO:0001720	SO:0000305	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001967	"A modified DNA adenine base,at the 8 carbon, often the product of DNA damage." [SO:ke]	1905434	SOFA	SOFA	sequence	3	SO	epigenetically_modified_region	8_oxoadenine
SO:0001411	SO:0001236	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001967	"A modified DNA adenine base,at the 8 carbon, often the product of DNA damage." [SO:ke]	2929849	SOFA	SOFA	sequence	4	SO	biological_region	8_oxoadenine
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001967	"A modified DNA adenine base,at the 8 carbon, often the product of DNA damage." [SO:ke]	2929850	SOFA	SOFA	sequence	4	SO	biological_region	8_oxoadenine
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001967	"A modified DNA adenine base,at the 8 carbon, often the product of DNA damage." [SO:ke]	4002896	SOFA	SOFA	sequence	5	SO	region	8_oxoadenine
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001967	"A modified DNA adenine base,at the 8 carbon, often the product of DNA damage." [SO:ke]	4967084	SOFA	SOFA	sequence	6	SO	sequence_feature	8_oxoadenine
SO:0001968	\N	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001968	"A transcript variant of a protein coding gene." [SO:ke]	46830	\N	\N	sequence	0	SO	coding_transcript_variant	coding_transcript_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001968	"A transcript variant of a protein coding gene." [SO:ke]	491626	\N	\N	sequence	1	SO	transcript_variant	coding_transcript_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001968	"A transcript variant of a protein coding gene." [SO:ke]	1074285	\N	\N	sequence	2	SO	gene_variant	coding_transcript_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001968	"A transcript variant of a protein coding gene." [SO:ke]	1905435	\N	\N	sequence	3	SO	feature_variant	coding_transcript_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001968	"A transcript variant of a protein coding gene." [SO:ke]	2929851	\N	\N	sequence	4	SO	structural_variant	coding_transcript_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001968	"A transcript variant of a protein coding gene." [SO:ke]	4002897	\N	\N	sequence	5	SO	sequence_variant	coding_transcript_variant
SO:0001969	\N	\N	"A transcript variant occurring within an intron of a coding transcript." [SO:ke]	SO:0001969	"A transcript variant occurring within an intron of a coding transcript." [SO:ke]	46831	\N	\N	sequence	0	SO	coding_transcript_intron_variant	coding_transcript_intron_variant
SO:0001627	SO:0001969	\N	"A transcript variant occurring within an intron." [SO:ke]	SO:0001969	"A transcript variant occurring within an intron of a coding transcript." [SO:ke]	491627	\N	\N	sequence	1	SO	intron_variant	coding_transcript_intron_variant
SO:0001968	SO:0001969	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001969	"A transcript variant occurring within an intron of a coding transcript." [SO:ke]	491628	\N	\N	sequence	1	SO	coding_transcript_variant	coding_transcript_intron_variant
SO:0001576	SO:0001627	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001969	"A transcript variant occurring within an intron of a coding transcript." [SO:ke]	1074286	\N	\N	sequence	2	SO	transcript_variant	coding_transcript_intron_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001969	"A transcript variant occurring within an intron of a coding transcript." [SO:ke]	1074287	\N	\N	sequence	2	SO	transcript_variant	coding_transcript_intron_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001969	"A transcript variant occurring within an intron of a coding transcript." [SO:ke]	1905436	\N	\N	sequence	3	SO	gene_variant	coding_transcript_intron_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001969	"A transcript variant occurring within an intron of a coding transcript." [SO:ke]	2929852	\N	\N	sequence	4	SO	feature_variant	coding_transcript_intron_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001969	"A transcript variant occurring within an intron of a coding transcript." [SO:ke]	4002898	\N	\N	sequence	5	SO	structural_variant	coding_transcript_intron_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001969	"A transcript variant occurring within an intron of a coding transcript." [SO:ke]	4967085	\N	\N	sequence	6	SO	sequence_variant	coding_transcript_intron_variant
SO:0001970	\N	\N	"A transcript variant occurring within an intron of a non coding transcript." [SO:ke]	SO:0001970	"A transcript variant occurring within an intron of a non coding transcript." [SO:ke]	46832	\N	\N	sequence	0	SO	non_coding_transcript_intron_variant	non_coding_transcript_intron_variant
SO:0001619	SO:0001970	\N	"A transcript variant of a non coding RNA gene." [SO:ke]	SO:0001970	"A transcript variant occurring within an intron of a non coding transcript." [SO:ke]	491629	\N	\N	sequence	1	SO	non_coding_transcript_variant	non_coding_transcript_intron_variant
SO:0001627	SO:0001970	\N	"A transcript variant occurring within an intron." [SO:ke]	SO:0001970	"A transcript variant occurring within an intron of a non coding transcript." [SO:ke]	491630	\N	\N	sequence	1	SO	intron_variant	non_coding_transcript_intron_variant
SO:0001576	SO:0001619	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001970	"A transcript variant occurring within an intron of a non coding transcript." [SO:ke]	1074288	\N	\N	sequence	2	SO	transcript_variant	non_coding_transcript_intron_variant
SO:0001576	SO:0001627	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001970	"A transcript variant occurring within an intron of a non coding transcript." [SO:ke]	1074289	\N	\N	sequence	2	SO	transcript_variant	non_coding_transcript_intron_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001970	"A transcript variant occurring within an intron of a non coding transcript." [SO:ke]	1905437	\N	\N	sequence	3	SO	gene_variant	non_coding_transcript_intron_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001970	"A transcript variant occurring within an intron of a non coding transcript." [SO:ke]	2929853	\N	\N	sequence	4	SO	feature_variant	non_coding_transcript_intron_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001970	"A transcript variant occurring within an intron of a non coding transcript." [SO:ke]	4002899	\N	\N	sequence	5	SO	structural_variant	non_coding_transcript_intron_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001970	"A transcript variant occurring within an intron of a non coding transcript." [SO:ke]	4967086	\N	\N	sequence	6	SO	sequence_variant	non_coding_transcript_intron_variant
SO:0001971	\N	\N	"" []	SO:0001971	"" []	46833	\N	\N	sequence	0	SO	zinc_finger_binding_site	zinc_finger_binding_site
SO:0001429	SO:0001971	\N	"A binding site that, in the molecule, interacts selectively and non-covalently with DNA." [SO:ke]	SO:0001971	"" []	491631	\N	\N	sequence	1	SO	DNA_binding_site	zinc_finger_binding_site
SO:0001655	SO:0001429	\N	"A binding site that, in the molecule, interacts selectively and non-covalently with nucleotide residues." [SO:cb]	SO:0001971	"" []	1074290	\N	\N	sequence	2	SO	nucleotide_binding_site	zinc_finger_binding_site
SO:0000409	SO:0001655	\N	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0001971	"" []	1905438	\N	biosapiens,SOFA	sequence	3	SO	binding_site	zinc_finger_binding_site
SO:0001411	SO:0000409	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001971	"" []	2929854	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	zinc_finger_binding_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001971	"" []	4002900	SOFA	SOFA	sequence	5	SO	region	zinc_finger_binding_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001971	"" []	4967087	SOFA	SOFA	sequence	6	SO	sequence_feature	zinc_finger_binding_site
SO:0001972	\N	\N	"A histone 4 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	SO:0001972	"A histone 4 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	46834	\N	\N	sequence	0	SO	histone_4_acetylation_site	histone_4_acetylation_site
SO:0001702	SO:0001972	\N	"A histone modification where the modification is the acylation of the residue." [SO:ke]	SO:0001972	"A histone 4 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	491632	\N	\N	sequence	1	SO	histone_acetylation_site	histone_4_acetylation_site
SO:0001700	SO:0001702	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001972	"A histone 4 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	1074291	\N	\N	sequence	2	SO	histone_modification	histone_4_acetylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001972	"A histone 4 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	1905439	\N	biosapiens	sequence	3	SO	post_translationally_modified_region	histone_4_acetylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001972	"A histone 4 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	1905440	\N	SOFA	sequence	3	SO	epigenetically_modified_region	histone_4_acetylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001972	"A histone 4 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	2929855	biosapiens	biosapiens	sequence	4	SO	biochemical_region_of_peptide	histone_4_acetylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001972	"A histone 4 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	2929856	SOFA	SOFA	sequence	4	SO	biological_region	histone_4_acetylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001972	"A histone 4 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	4002901	biosapiens	biosapiens	sequence	5	SO	polypeptide_motif	histone_4_acetylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001972	"A histone 4 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	6948199	SOFA	SOFA	sequence	10	SO	region	histone_4_acetylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001972	"A histone 4 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	4967088	biosapiens	biosapiens	sequence	6	SO	polypeptide_conserved_region	histone_4_acetylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001972	"A histone 4 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	7029799	SOFA	SOFA	sequence	11	SO	sequence_feature	histone_4_acetylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001972	"A histone 4 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	5741618	biosapiens	biosapiens,SOFA	sequence	7	SO	polypeptide_region	histone_4_acetylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001972	"A histone 4 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	6311290	biosapiens,SOFA	SOFA	sequence	8	SO	polypeptide	histone_4_acetylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001972	"A histone 4 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	6311291	biosapiens,SOFA	SOFA	sequence	8	SO	biological_region	histone_4_acetylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001972	"A histone 4 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	6699529	SOFA	SOFA	sequence	9	SO	biological_region	histone_4_acetylation_site
SO:0001973	\N	\N	"A histone 3 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	SO:0001973	"A histone 3 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	46835	\N	\N	sequence	0	SO	histone_3_acetylation_site	histone_3_acetylation_site
SO:0001702	SO:0001973	\N	"A histone modification where the modification is the acylation of the residue." [SO:ke]	SO:0001973	"A histone 3 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	491633	\N	\N	sequence	1	SO	histone_acetylation_site	histone_3_acetylation_site
SO:0001700	SO:0001702	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0001973	"A histone 3 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	1074292	\N	\N	sequence	2	SO	histone_modification	histone_3_acetylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0001973	"A histone 3 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	1905441	\N	biosapiens	sequence	3	SO	post_translationally_modified_region	histone_3_acetylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0001973	"A histone 3 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	1905442	\N	SOFA	sequence	3	SO	epigenetically_modified_region	histone_3_acetylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0001973	"A histone 3 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	2929857	biosapiens	biosapiens	sequence	4	SO	biochemical_region_of_peptide	histone_3_acetylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001973	"A histone 3 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	2929858	SOFA	SOFA	sequence	4	SO	biological_region	histone_3_acetylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0001973	"A histone 3 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	4002903	biosapiens	biosapiens	sequence	5	SO	polypeptide_motif	histone_3_acetylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001973	"A histone 3 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	6948200	SOFA	SOFA	sequence	10	SO	region	histone_3_acetylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0001973	"A histone 3 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	4967090	biosapiens	biosapiens	sequence	6	SO	polypeptide_conserved_region	histone_3_acetylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001973	"A histone 3 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	7029800	SOFA	SOFA	sequence	11	SO	sequence_feature	histone_3_acetylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0001973	"A histone 3 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	5741619	biosapiens	biosapiens,SOFA	sequence	7	SO	polypeptide_region	histone_3_acetylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0001973	"A histone 3 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	6311292	biosapiens,SOFA	SOFA	sequence	8	SO	polypeptide	histone_3_acetylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001973	"A histone 3 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	6311293	biosapiens,SOFA	SOFA	sequence	8	SO	biological_region	histone_3_acetylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001973	"A histone 3 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	6699531	SOFA	SOFA	sequence	9	SO	biological_region	histone_3_acetylation_site
SO:0001974	\N	\N	"A transcription factor binding site with consensus sequence CCGCGNGGNGGCAG, bound by CCCTF-binding factor." [EBI:nj]	SO:0001974	"A transcription factor binding site with consensus sequence CCGCGNGGNGGCAG, bound by CCCTF-binding factor." [EBI:nj]	46836	\N	\N	sequence	0	SO	CTCF_binding_site	CTCF_binding_site
SO:0001659	SO:0001974	\N	"" []	SO:0001974	"A transcription factor binding site with consensus sequence CCGCGNGGNGGCAG, bound by CCCTF-binding factor." [EBI:nj]	491634	\N	\N	sequence	1	SO	promoter_element	CTCF_binding_site
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001974	"A transcription factor binding site with consensus sequence CCGCGNGGNGGCAG, bound by CCCTF-binding factor." [EBI:nj]	1074293	\N	\N	sequence	2	SO	DNA_motif	CTCF_binding_site
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001974	"A transcription factor binding site with consensus sequence CCGCGNGGNGGCAG, bound by CCCTF-binding factor." [EBI:nj]	1905443	\N	SOFA	sequence	3	SO	nucleotide_motif	CTCF_binding_site
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001974	"A transcription factor binding site with consensus sequence CCGCGNGGNGGCAG, bound by CCCTF-binding factor." [EBI:nj]	2929859	SOFA	SOFA	sequence	4	SO	sequence_motif	CTCF_binding_site
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001974	"A transcription factor binding site with consensus sequence CCGCGNGGNGGCAG, bound by CCCTF-binding factor." [EBI:nj]	4002905	SOFA	SOFA	sequence	5	SO	biological_region	CTCF_binding_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001974	"A transcription factor binding site with consensus sequence CCGCGNGGNGGCAG, bound by CCCTF-binding factor." [EBI:nj]	4967092	SOFA	SOFA	sequence	6	SO	region	CTCF_binding_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001974	"A transcription factor binding site with consensus sequence CCGCGNGGNGGCAG, bound by CCCTF-binding factor." [EBI:nj]	5741620	SOFA	SOFA	sequence	7	SO	sequence_feature	CTCF_binding_site
SO:0001975	\N	\N	"A restriction enzyme recognition site that, when cleaved, results in 5 prime overhangs." [SO:ke]	SO:0001975	"A restriction enzyme recognition site that, when cleaved, results in 5 prime overhangs." [SO:ke]	46837	\N	\N	sequence	0	SO	five_prime_sticky_end_restriction_enzyme_cleavage_site	five_prime_sticky_end_restriction_enzyme_cleavage_site
SO:0001692	SO:0001975	\N	"" []	SO:0001975	"A restriction enzyme recognition site that, when cleaved, results in 5 prime overhangs." [SO:ke]	491635	\N	\N	sequence	1	SO	sticky_end_restriction_enzyme_cleavage_site	five_prime_sticky_end_restriction_enzyme_cleavage_site
SO:0001687	SO:0001692	\N	"The nucleotide region (usually a palindrome) that is recognized by a restriction enzyme. This may or may not be equal to the restriction enzyme binding site." [SO:ke]	SO:0001975	"A restriction enzyme recognition site that, when cleaved, results in 5 prime overhangs." [SO:ke]	1074294	\N	\N	sequence	2	SO	restriction_enzyme_recognition_site	five_prime_sticky_end_restriction_enzyme_cleavage_site
SO:0001954	SO:0001687	\N	"A region related to restriction enzyme function." [SO:ke]	SO:0001975	"A restriction enzyme recognition site that, when cleaved, results in 5 prime overhangs." [SO:ke]	1905444	\N	\N	sequence	3	SO	restriction_enzyme_region	five_prime_sticky_end_restriction_enzyme_cleavage_site
SO:0001411	SO:0001954	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001975	"A restriction enzyme recognition site that, when cleaved, results in 5 prime overhangs." [SO:ke]	2929860	\N	SOFA	sequence	4	SO	biological_region	five_prime_sticky_end_restriction_enzyme_cleavage_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001975	"A restriction enzyme recognition site that, when cleaved, results in 5 prime overhangs." [SO:ke]	4002906	SOFA	SOFA	sequence	5	SO	region	five_prime_sticky_end_restriction_enzyme_cleavage_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001975	"A restriction enzyme recognition site that, when cleaved, results in 5 prime overhangs." [SO:ke]	4967093	SOFA	SOFA	sequence	6	SO	sequence_feature	five_prime_sticky_end_restriction_enzyme_cleavage_site
SO:0001976	\N	\N	"A restriction enzyme recognition site that, when cleaved, results in 3 prime overhangs." [SO:ke]	SO:0001976	"A restriction enzyme recognition site that, when cleaved, results in 3 prime overhangs." [SO:ke]	46838	\N	\N	sequence	0	SO	three_prime_sticky_end_restriction_enzyme_cleavage_site	three_prime_sticky_end_restriction_enzyme_cleavage_site
SO:0001692	SO:0001976	\N	"" []	SO:0001976	"A restriction enzyme recognition site that, when cleaved, results in 3 prime overhangs." [SO:ke]	491636	\N	\N	sequence	1	SO	sticky_end_restriction_enzyme_cleavage_site	three_prime_sticky_end_restriction_enzyme_cleavage_site
SO:0001687	SO:0001692	\N	"The nucleotide region (usually a palindrome) that is recognized by a restriction enzyme. This may or may not be equal to the restriction enzyme binding site." [SO:ke]	SO:0001976	"A restriction enzyme recognition site that, when cleaved, results in 3 prime overhangs." [SO:ke]	1074295	\N	\N	sequence	2	SO	restriction_enzyme_recognition_site	three_prime_sticky_end_restriction_enzyme_cleavage_site
SO:0001954	SO:0001687	\N	"A region related to restriction enzyme function." [SO:ke]	SO:0001976	"A restriction enzyme recognition site that, when cleaved, results in 3 prime overhangs." [SO:ke]	1905445	\N	\N	sequence	3	SO	restriction_enzyme_region	three_prime_sticky_end_restriction_enzyme_cleavage_site
SO:0001411	SO:0001954	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001976	"A restriction enzyme recognition site that, when cleaved, results in 3 prime overhangs." [SO:ke]	2929861	\N	SOFA	sequence	4	SO	biological_region	three_prime_sticky_end_restriction_enzyme_cleavage_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001976	"A restriction enzyme recognition site that, when cleaved, results in 3 prime overhangs." [SO:ke]	4002907	SOFA	SOFA	sequence	5	SO	region	three_prime_sticky_end_restriction_enzyme_cleavage_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001976	"A restriction enzyme recognition site that, when cleaved, results in 3 prime overhangs." [SO:ke]	4967094	SOFA	SOFA	sequence	6	SO	sequence_feature	three_prime_sticky_end_restriction_enzyme_cleavage_site
SO:0001977	\N	\N	"A region of a transcript encoding the cleavage site for a ribonuclease enzyme." [SO:ke]	SO:0001977	"A region of a transcript encoding the cleavage site for a ribonuclease enzyme." [SO:ke]	46839	\N	\N	sequence	0	SO	ribonuclease_site	ribonuclease_site
SO:0000833	SO:0001977	\N	"A region of a transcript." [SO:ke]	SO:0001977	"A region of a transcript encoding the cleavage site for a ribonuclease enzyme." [SO:ke]	491637	\N	SOFA	sequence	1	SO	transcript_region	ribonuclease_site
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001977	"A region of a transcript encoding the cleavage site for a ribonuclease enzyme." [SO:ke]	1074296	SOFA	SOFA	sequence	2	SO	transcript	ribonuclease_site
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001977	"A region of a transcript encoding the cleavage site for a ribonuclease enzyme." [SO:ke]	1074297	SOFA	SOFA	sequence	2	SO	biological_region	ribonuclease_site
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001977	"A region of a transcript encoding the cleavage site for a ribonuclease enzyme." [SO:ke]	1905446	SOFA	SOFA	sequence	3	SO	gene_member_region	ribonuclease_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001977	"A region of a transcript encoding the cleavage site for a ribonuclease enzyme." [SO:ke]	4002908	SOFA	SOFA	sequence	5	SO	region	ribonuclease_site
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001977	"A region of a transcript encoding the cleavage site for a ribonuclease enzyme." [SO:ke]	2929862	SOFA	SOFA	sequence	4	SO	biological_region	ribonuclease_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001977	"A region of a transcript encoding the cleavage site for a ribonuclease enzyme." [SO:ke]	4132342	SOFA	SOFA	sequence	6	SO	sequence_feature	ribonuclease_site
SO:0001978	\N	\N	"A region of  sequence where developer information is encoded." [SO:ke]	SO:0001978	"A region of  sequence where developer information is encoded." [SO:ke]	46840	\N	\N	sequence	0	SO	signature	signature
SO:0000804	SO:0001978	\N	"A region that is engineered." [SO:xp]	SO:0001978	"A region of  sequence where developer information is encoded." [SO:ke]	491638	\N	\N	sequence	1	SO	engineered_region	signature
SO:0001409	SO:0000804	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001978	"A region of  sequence where developer information is encoded." [SO:ke]	1074298	\N	SOFA	sequence	2	SO	biomaterial_region	signature
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001978	"A region of  sequence where developer information is encoded." [SO:ke]	1905448	SOFA	SOFA	sequence	3	SO	region	signature
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001978	"A region of  sequence where developer information is encoded." [SO:ke]	2929864	SOFA	SOFA	sequence	4	SO	sequence_feature	signature
SO:0001979	\N	\N	"A motif that affects the stability of RNA." [PMID:22495308, SO:ke]	SO:0001979	"A motif that affects the stability of RNA." [PMID:22495308, SO:ke]	46841	\N	\N	sequence	0	SO	RNA_stability_element	RNA_stability_element
SO:0000715	SO:0001979	\N	"A motif that is active in RNA sequence." [SO:ke]	SO:0001979	"A motif that affects the stability of RNA." [PMID:22495308, SO:ke]	491639	\N	SOFA	sequence	1	SO	RNA_motif	RNA_stability_element
SO:0000714	SO:0000715	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001979	"A motif that affects the stability of RNA." [PMID:22495308, SO:ke]	1074299	SOFA	SOFA	sequence	2	SO	nucleotide_motif	RNA_stability_element
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001979	"A motif that affects the stability of RNA." [PMID:22495308, SO:ke]	1905449	SOFA	SOFA	sequence	3	SO	sequence_motif	RNA_stability_element
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001979	"A motif that affects the stability of RNA." [PMID:22495308, SO:ke]	2929865	SOFA	SOFA	sequence	4	SO	biological_region	RNA_stability_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001979	"A motif that affects the stability of RNA." [PMID:22495308, SO:ke]	4002909	SOFA	SOFA	sequence	5	SO	region	RNA_stability_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001979	"A motif that affects the stability of RNA." [PMID:22495308, SO:ke]	4967095	SOFA	SOFA	sequence	6	SO	sequence_feature	RNA_stability_element
SO:0001980	\N	\N	"A regulatory promoter element identified in mutation experiments, with consensus sequence: CACGTG. Present in promoters, intergenic regions, coding regions, and introns. They are involved in gene expression responses to light and interact with G-box binding factor and I-box binding factor 1a." [PMID:19249238, PMID:8571452, SO:ml]	SO:0001980	"A regulatory promoter element identified in mutation experiments, with consensus sequence: CACGTG. Present in promoters, intergenic regions, coding regions, and introns. They are involved in gene expression responses to light and interact with G-box binding factor and I-box binding factor 1a." [PMID:19249238, PMID:8571452, SO:ml]	46842	\N	\N	sequence	0	SO	G_box	G_box
SO:0001678	SO:0001980	\N	"A promoter element that is not part of the core promoter, but provides the promoter with a specific regulatory region." [PMID:12381659]	SO:0001980	"A regulatory promoter element identified in mutation experiments, with consensus sequence: CACGTG. Present in promoters, intergenic regions, coding regions, and introns. They are involved in gene expression responses to light and interact with G-box binding factor and I-box binding factor 1a." [PMID:19249238, PMID:8571452, SO:ml]	491640	\N	\N	sequence	1	SO	regulatory_promoter_element	G_box
SO:0001659	SO:0001678	\N	"" []	SO:0001980	"A regulatory promoter element identified in mutation experiments, with consensus sequence: CACGTG. Present in promoters, intergenic regions, coding regions, and introns. They are involved in gene expression responses to light and interact with G-box binding factor and I-box binding factor 1a." [PMID:19249238, PMID:8571452, SO:ml]	1074300	\N	\N	sequence	2	SO	promoter_element	G_box
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001980	"A regulatory promoter element identified in mutation experiments, with consensus sequence: CACGTG. Present in promoters, intergenic regions, coding regions, and introns. They are involved in gene expression responses to light and interact with G-box binding factor and I-box binding factor 1a." [PMID:19249238, PMID:8571452, SO:ml]	1905450	\N	\N	sequence	3	SO	DNA_motif	G_box
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001980	"A regulatory promoter element identified in mutation experiments, with consensus sequence: CACGTG. Present in promoters, intergenic regions, coding regions, and introns. They are involved in gene expression responses to light and interact with G-box binding factor and I-box binding factor 1a." [PMID:19249238, PMID:8571452, SO:ml]	2929866	\N	SOFA	sequence	4	SO	nucleotide_motif	G_box
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001980	"A regulatory promoter element identified in mutation experiments, with consensus sequence: CACGTG. Present in promoters, intergenic regions, coding regions, and introns. They are involved in gene expression responses to light and interact with G-box binding factor and I-box binding factor 1a." [PMID:19249238, PMID:8571452, SO:ml]	4002910	SOFA	SOFA	sequence	5	SO	sequence_motif	G_box
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001980	"A regulatory promoter element identified in mutation experiments, with consensus sequence: CACGTG. Present in promoters, intergenic regions, coding regions, and introns. They are involved in gene expression responses to light and interact with G-box binding factor and I-box binding factor 1a." [PMID:19249238, PMID:8571452, SO:ml]	4967096	SOFA	SOFA	sequence	6	SO	biological_region	G_box
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001980	"A regulatory promoter element identified in mutation experiments, with consensus sequence: CACGTG. Present in promoters, intergenic regions, coding regions, and introns. They are involved in gene expression responses to light and interact with G-box binding factor and I-box binding factor 1a." [PMID:19249238, PMID:8571452, SO:ml]	5741621	SOFA	SOFA	sequence	7	SO	region	G_box
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001980	"A regulatory promoter element identified in mutation experiments, with consensus sequence: CACGTG. Present in promoters, intergenic regions, coding regions, and introns. They are involved in gene expression responses to light and interact with G-box binding factor and I-box binding factor 1a." [PMID:19249238, PMID:8571452, SO:ml]	6311294	SOFA	SOFA	sequence	8	SO	sequence_feature	G_box
SO:0001981	\N	\N	"An orientation dependent  regulatory promoter element, with consensus sequence of TTGCACAN4TTGCACA, found in plants." [PMID:17381552, PMID:2902624, SO:ml]	SO:0001981	"An orientation dependent  regulatory promoter element, with consensus sequence of TTGCACAN4TTGCACA, found in plants." [PMID:17381552, PMID:2902624, SO:ml]	46843	\N	\N	sequence	0	SO	L_box	L_box
SO:0001678	SO:0001981	\N	"A promoter element that is not part of the core promoter, but provides the promoter with a specific regulatory region." [PMID:12381659]	SO:0001981	"An orientation dependent  regulatory promoter element, with consensus sequence of TTGCACAN4TTGCACA, found in plants." [PMID:17381552, PMID:2902624, SO:ml]	491641	\N	\N	sequence	1	SO	regulatory_promoter_element	L_box
SO:0001659	SO:0001678	\N	"" []	SO:0001981	"An orientation dependent  regulatory promoter element, with consensus sequence of TTGCACAN4TTGCACA, found in plants." [PMID:17381552, PMID:2902624, SO:ml]	1074301	\N	\N	sequence	2	SO	promoter_element	L_box
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001981	"An orientation dependent  regulatory promoter element, with consensus sequence of TTGCACAN4TTGCACA, found in plants." [PMID:17381552, PMID:2902624, SO:ml]	1905451	\N	\N	sequence	3	SO	DNA_motif	L_box
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001981	"An orientation dependent  regulatory promoter element, with consensus sequence of TTGCACAN4TTGCACA, found in plants." [PMID:17381552, PMID:2902624, SO:ml]	2929867	\N	SOFA	sequence	4	SO	nucleotide_motif	L_box
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001981	"An orientation dependent  regulatory promoter element, with consensus sequence of TTGCACAN4TTGCACA, found in plants." [PMID:17381552, PMID:2902624, SO:ml]	4002911	SOFA	SOFA	sequence	5	SO	sequence_motif	L_box
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001981	"An orientation dependent  regulatory promoter element, with consensus sequence of TTGCACAN4TTGCACA, found in plants." [PMID:17381552, PMID:2902624, SO:ml]	4967097	SOFA	SOFA	sequence	6	SO	biological_region	L_box
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001981	"An orientation dependent  regulatory promoter element, with consensus sequence of TTGCACAN4TTGCACA, found in plants." [PMID:17381552, PMID:2902624, SO:ml]	5741622	SOFA	SOFA	sequence	7	SO	region	L_box
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001981	"An orientation dependent  regulatory promoter element, with consensus sequence of TTGCACAN4TTGCACA, found in plants." [PMID:17381552, PMID:2902624, SO:ml]	6311295	SOFA	SOFA	sequence	8	SO	sequence_feature	L_box
SO:0001982	\N	\N	"A plant regulatory promoter motif,  composed of a highly conserved hexamer GATAAG (I-box core)." [PMID:2347304, PMID:2902624, SO:ml]	SO:0001982	"A plant regulatory promoter motif,  composed of a highly conserved hexamer GATAAG (I-box core)." [PMID:2347304, PMID:2902624, SO:ml]	46844	\N	\N	sequence	0	SO	I-box	I-box
SO:0001678	SO:0001982	\N	"A promoter element that is not part of the core promoter, but provides the promoter with a specific regulatory region." [PMID:12381659]	SO:0001982	"A plant regulatory promoter motif,  composed of a highly conserved hexamer GATAAG (I-box core)." [PMID:2347304, PMID:2902624, SO:ml]	491642	\N	\N	sequence	1	SO	regulatory_promoter_element	I-box
SO:0001659	SO:0001678	\N	"" []	SO:0001982	"A plant regulatory promoter motif,  composed of a highly conserved hexamer GATAAG (I-box core)." [PMID:2347304, PMID:2902624, SO:ml]	1074302	\N	\N	sequence	2	SO	promoter_element	I-box
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001982	"A plant regulatory promoter motif,  composed of a highly conserved hexamer GATAAG (I-box core)." [PMID:2347304, PMID:2902624, SO:ml]	1905452	\N	\N	sequence	3	SO	DNA_motif	I-box
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001982	"A plant regulatory promoter motif,  composed of a highly conserved hexamer GATAAG (I-box core)." [PMID:2347304, PMID:2902624, SO:ml]	2929868	\N	SOFA	sequence	4	SO	nucleotide_motif	I-box
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001982	"A plant regulatory promoter motif,  composed of a highly conserved hexamer GATAAG (I-box core)." [PMID:2347304, PMID:2902624, SO:ml]	4002912	SOFA	SOFA	sequence	5	SO	sequence_motif	I-box
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001982	"A plant regulatory promoter motif,  composed of a highly conserved hexamer GATAAG (I-box core)." [PMID:2347304, PMID:2902624, SO:ml]	4967098	SOFA	SOFA	sequence	6	SO	biological_region	I-box
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001982	"A plant regulatory promoter motif,  composed of a highly conserved hexamer GATAAG (I-box core)." [PMID:2347304, PMID:2902624, SO:ml]	5741623	SOFA	SOFA	sequence	7	SO	region	I-box
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001982	"A plant regulatory promoter motif,  composed of a highly conserved hexamer GATAAG (I-box core)." [PMID:2347304, PMID:2902624, SO:ml]	6311296	SOFA	SOFA	sequence	8	SO	sequence_feature	I-box
SO:0001983	\N	\N	"A 5' UTR variant where a premature start codon is introduced, moved or lost." [SANGER:am]	SO:0001983	"A 5' UTR variant where a premature start codon is introduced, moved or lost." [SANGER:am]	46845	\N	\N	sequence	0	SO	5_prime_UTR_premature_start_codon_variant	5_prime_UTR_premature_start_codon_variant
SO:0001623	SO:0001983	\N	"A UTR variant of the 5' UTR." [SO:ke]	SO:0001983	"A 5' UTR variant where a premature start codon is introduced, moved or lost." [SANGER:am]	491643	\N	\N	sequence	1	SO	5_prime_UTR_variant	5_prime_UTR_premature_start_codon_variant
SO:0001622	SO:0001623	\N	"A transcript variant that is located within the UTR." [SO:ke]	SO:0001983	"A 5' UTR variant where a premature start codon is introduced, moved or lost." [SANGER:am]	1074303	\N	\N	sequence	2	SO	UTR_variant	5_prime_UTR_premature_start_codon_variant
SO:0001791	SO:0001622	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001983	"A 5' UTR variant where a premature start codon is introduced, moved or lost." [SANGER:am]	1905453	\N	\N	sequence	3	SO	exon_variant	5_prime_UTR_premature_start_codon_variant
SO:0001968	SO:0001622	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001983	"A 5' UTR variant where a premature start codon is introduced, moved or lost." [SANGER:am]	1905454	\N	\N	sequence	3	SO	coding_transcript_variant	5_prime_UTR_premature_start_codon_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001983	"A 5' UTR variant where a premature start codon is introduced, moved or lost." [SANGER:am]	2929869	\N	\N	sequence	4	SO	transcript_variant	5_prime_UTR_premature_start_codon_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001983	"A 5' UTR variant where a premature start codon is introduced, moved or lost." [SANGER:am]	2929870	\N	\N	sequence	4	SO	transcript_variant	5_prime_UTR_premature_start_codon_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001983	"A 5' UTR variant where a premature start codon is introduced, moved or lost." [SANGER:am]	4002913	\N	\N	sequence	5	SO	gene_variant	5_prime_UTR_premature_start_codon_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001983	"A 5' UTR variant where a premature start codon is introduced, moved or lost." [SANGER:am]	4967099	\N	\N	sequence	6	SO	feature_variant	5_prime_UTR_premature_start_codon_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001983	"A 5' UTR variant where a premature start codon is introduced, moved or lost." [SANGER:am]	5741624	\N	\N	sequence	7	SO	structural_variant	5_prime_UTR_premature_start_codon_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001983	"A 5' UTR variant where a premature start codon is introduced, moved or lost." [SANGER:am]	6311297	\N	\N	sequence	8	SO	sequence_variant	5_prime_UTR_premature_start_codon_variant
SO:0001984	\N	\N	"A gene cassette array that corresponds to a silenced version of a mating type region." [PomBase:mah]	SO:0001984	"A gene cassette array that corresponds to a silenced version of a mating type region." [PomBase:mah]	46846	\N	\N	sequence	0	SO	silent_mating_type_cassette_array	silent_mating_type_cassette_array
SO:0005854	SO:0001984	\N	"An array of non-functional genes whose members, when captured by recombination form functional genes." [SO:ma]	SO:0001984	"A gene cassette array that corresponds to a silenced version of a mating type region." [PomBase:mah]	491644	\N	\N	sequence	1	SO	gene_cassette_array	silent_mating_type_cassette_array
SO:0005855	SO:0005854	\N	"A collection of related genes." [SO:ma]	SO:0001984	"A gene cassette array that corresponds to a silenced version of a mating type region." [PomBase:mah]	1074304	\N	SOFA	sequence	2	SO	gene_group	silent_mating_type_cassette_array
SO:0001411	SO:0005855	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001984	"A gene cassette array that corresponds to a silenced version of a mating type region." [PomBase:mah]	1905455	SOFA	SOFA	sequence	3	SO	biological_region	silent_mating_type_cassette_array
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001984	"A gene cassette array that corresponds to a silenced version of a mating type region." [PomBase:mah]	2929871	SOFA	SOFA	sequence	4	SO	region	silent_mating_type_cassette_array
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001984	"A gene cassette array that corresponds to a silenced version of a mating type region." [PomBase:mah]	4002914	SOFA	SOFA	sequence	5	SO	sequence_feature	silent_mating_type_cassette_array
SO:0001985	\N	\N	"Any of the DNA segments produced by discontinuous synthesis of the lagging strand during DNA replication." [ISBN:0805350152]	SO:0001985	"Any of the DNA segments produced by discontinuous synthesis of the lagging strand during DNA replication." [ISBN:0805350152]	46847	\N	\N	sequence	0	SO	Okazaki_fragment	Okazaki_fragment
SO:0001411	SO:0001985	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001985	"Any of the DNA segments produced by discontinuous synthesis of the lagging strand during DNA replication." [ISBN:0805350152]	491645	\N	SOFA	sequence	1	SO	biological_region	Okazaki_fragment
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001985	"Any of the DNA segments produced by discontinuous synthesis of the lagging strand during DNA replication." [ISBN:0805350152]	1074305	SOFA	SOFA	sequence	2	SO	region	Okazaki_fragment
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001985	"Any of the DNA segments produced by discontinuous synthesis of the lagging strand during DNA replication." [ISBN:0805350152]	1905456	SOFA	SOFA	sequence	3	SO	sequence_feature	Okazaki_fragment
SO:0001986	\N	\N	"A feature variant, where the alteration occurs upstream of the transcript TSS." [EBI:gr]	SO:0001986	"A feature variant, where the alteration occurs upstream of the transcript TSS." [EBI:gr]	46848	\N	\N	sequence	0	SO	upstream_transcript_variant	upstream_transcript_variant
SO:0001628	SO:0001986	\N	"A sequence variant located in the intergenic region, between genes." [SO:ke]	SO:0001986	"A feature variant, where the alteration occurs upstream of the transcript TSS." [EBI:gr]	491646	\N	\N	sequence	1	SO	intergenic_variant	upstream_transcript_variant
SO:0001878	SO:0001628	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001986	"A feature variant, where the alteration occurs upstream of the transcript TSS." [EBI:gr]	1074306	\N	\N	sequence	2	SO	feature_variant	upstream_transcript_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001986	"A feature variant, where the alteration occurs upstream of the transcript TSS." [EBI:gr]	1905457	\N	\N	sequence	3	SO	structural_variant	upstream_transcript_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001986	"A feature variant, where the alteration occurs upstream of the transcript TSS." [EBI:gr]	2929872	\N	\N	sequence	4	SO	sequence_variant	upstream_transcript_variant
SO:0001987	\N	\N	"" []	SO:0001987	"" []	46849	\N	\N	sequence	0	SO	downstream_transcript_variant	downstream_transcript_variant
SO:0001628	SO:0001987	\N	"A sequence variant located in the intergenic region, between genes." [SO:ke]	SO:0001987	"" []	491647	\N	\N	sequence	1	SO	intergenic_variant	downstream_transcript_variant
SO:0001878	SO:0001628	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001987	"" []	1074307	\N	\N	sequence	2	SO	feature_variant	downstream_transcript_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001987	"" []	1905458	\N	\N	sequence	3	SO	structural_variant	downstream_transcript_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001987	"" []	2929873	\N	\N	sequence	4	SO	sequence_variant	downstream_transcript_variant
SO:0001988	\N	\N	"A 5' UTR variant where a premature start codon is gained." [Sanger:am]	SO:0001988	"A 5' UTR variant where a premature start codon is gained." [Sanger:am]	46850	\N	\N	sequence	0	SO	5_prime_UTR_premature_start_codon_gain_variant	5_prime_UTR_premature_start_codon_gain_variant
SO:0001983	SO:0001988	\N	"A 5' UTR variant where a premature start codon is introduced, moved or lost." [SANGER:am]	SO:0001988	"A 5' UTR variant where a premature start codon is gained." [Sanger:am]	491648	\N	\N	sequence	1	SO	5_prime_UTR_premature_start_codon_variant	5_prime_UTR_premature_start_codon_gain_variant
SO:0001623	SO:0001983	\N	"A UTR variant of the 5' UTR." [SO:ke]	SO:0001988	"A 5' UTR variant where a premature start codon is gained." [Sanger:am]	1074308	\N	\N	sequence	2	SO	5_prime_UTR_variant	5_prime_UTR_premature_start_codon_gain_variant
SO:0001622	SO:0001623	\N	"A transcript variant that is located within the UTR." [SO:ke]	SO:0001988	"A 5' UTR variant where a premature start codon is gained." [Sanger:am]	1905459	\N	\N	sequence	3	SO	UTR_variant	5_prime_UTR_premature_start_codon_gain_variant
SO:0001791	SO:0001622	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001988	"A 5' UTR variant where a premature start codon is gained." [Sanger:am]	2929874	\N	\N	sequence	4	SO	exon_variant	5_prime_UTR_premature_start_codon_gain_variant
SO:0001968	SO:0001622	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001988	"A 5' UTR variant where a premature start codon is gained." [Sanger:am]	2929875	\N	\N	sequence	4	SO	coding_transcript_variant	5_prime_UTR_premature_start_codon_gain_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001988	"A 5' UTR variant where a premature start codon is gained." [Sanger:am]	4002915	\N	\N	sequence	5	SO	transcript_variant	5_prime_UTR_premature_start_codon_gain_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001988	"A 5' UTR variant where a premature start codon is gained." [Sanger:am]	4002916	\N	\N	sequence	5	SO	transcript_variant	5_prime_UTR_premature_start_codon_gain_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001988	"A 5' UTR variant where a premature start codon is gained." [Sanger:am]	4967100	\N	\N	sequence	6	SO	gene_variant	5_prime_UTR_premature_start_codon_gain_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001988	"A 5' UTR variant where a premature start codon is gained." [Sanger:am]	5741625	\N	\N	sequence	7	SO	feature_variant	5_prime_UTR_premature_start_codon_gain_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001988	"A 5' UTR variant where a premature start codon is gained." [Sanger:am]	6311298	\N	\N	sequence	8	SO	structural_variant	5_prime_UTR_premature_start_codon_gain_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001988	"A 5' UTR variant where a premature start codon is gained." [Sanger:am]	6699533	\N	\N	sequence	9	SO	sequence_variant	5_prime_UTR_premature_start_codon_gain_variant
SO:0001989	\N	\N	"A 5' UTR variant where a premature start codon is lost." [SANGER:am]	SO:0001989	"A 5' UTR variant where a premature start codon is lost." [SANGER:am]	46851	\N	\N	sequence	0	SO	5_prime_UTR_premature_start_codon_loss_variant	5_prime_UTR_premature_start_codon_loss_variant
SO:0001983	SO:0001989	\N	"A 5' UTR variant where a premature start codon is introduced, moved or lost." [SANGER:am]	SO:0001989	"A 5' UTR variant where a premature start codon is lost." [SANGER:am]	491649	\N	\N	sequence	1	SO	5_prime_UTR_premature_start_codon_variant	5_prime_UTR_premature_start_codon_loss_variant
SO:0001623	SO:0001983	\N	"A UTR variant of the 5' UTR." [SO:ke]	SO:0001989	"A 5' UTR variant where a premature start codon is lost." [SANGER:am]	1074309	\N	\N	sequence	2	SO	5_prime_UTR_variant	5_prime_UTR_premature_start_codon_loss_variant
SO:0001622	SO:0001623	\N	"A transcript variant that is located within the UTR." [SO:ke]	SO:0001989	"A 5' UTR variant where a premature start codon is lost." [SANGER:am]	1905460	\N	\N	sequence	3	SO	UTR_variant	5_prime_UTR_premature_start_codon_loss_variant
SO:0001791	SO:0001622	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001989	"A 5' UTR variant where a premature start codon is lost." [SANGER:am]	2929876	\N	\N	sequence	4	SO	exon_variant	5_prime_UTR_premature_start_codon_loss_variant
SO:0001968	SO:0001622	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001989	"A 5' UTR variant where a premature start codon is lost." [SANGER:am]	2929877	\N	\N	sequence	4	SO	coding_transcript_variant	5_prime_UTR_premature_start_codon_loss_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001989	"A 5' UTR variant where a premature start codon is lost." [SANGER:am]	4002917	\N	\N	sequence	5	SO	transcript_variant	5_prime_UTR_premature_start_codon_loss_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001989	"A 5' UTR variant where a premature start codon is lost." [SANGER:am]	4002918	\N	\N	sequence	5	SO	transcript_variant	5_prime_UTR_premature_start_codon_loss_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001989	"A 5' UTR variant where a premature start codon is lost." [SANGER:am]	4967101	\N	\N	sequence	6	SO	gene_variant	5_prime_UTR_premature_start_codon_loss_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001989	"A 5' UTR variant where a premature start codon is lost." [SANGER:am]	5741626	\N	\N	sequence	7	SO	feature_variant	5_prime_UTR_premature_start_codon_loss_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001989	"A 5' UTR variant where a premature start codon is lost." [SANGER:am]	6311299	\N	\N	sequence	8	SO	structural_variant	5_prime_UTR_premature_start_codon_loss_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001989	"A 5' UTR variant where a premature start codon is lost." [SANGER:am]	6699534	\N	\N	sequence	9	SO	sequence_variant	5_prime_UTR_premature_start_codon_loss_variant
SO:0001990	\N	\N	"A 5' UTR variant where a premature start codon is moved." [SANGER:am]	SO:0001990	"A 5' UTR variant where a premature start codon is moved." [SANGER:am]	46852	\N	\N	sequence	0	SO	five_prime_UTR_premature_start_codon_location_variant	five_prime_UTR_premature_start_codon_location_variant
SO:0001983	SO:0001990	\N	"A 5' UTR variant where a premature start codon is introduced, moved or lost." [SANGER:am]	SO:0001990	"A 5' UTR variant where a premature start codon is moved." [SANGER:am]	491650	\N	\N	sequence	1	SO	5_prime_UTR_premature_start_codon_variant	five_prime_UTR_premature_start_codon_location_variant
SO:0001623	SO:0001983	\N	"A UTR variant of the 5' UTR." [SO:ke]	SO:0001990	"A 5' UTR variant where a premature start codon is moved." [SANGER:am]	1074310	\N	\N	sequence	2	SO	5_prime_UTR_variant	five_prime_UTR_premature_start_codon_location_variant
SO:0001622	SO:0001623	\N	"A transcript variant that is located within the UTR." [SO:ke]	SO:0001990	"A 5' UTR variant where a premature start codon is moved." [SANGER:am]	1905461	\N	\N	sequence	3	SO	UTR_variant	five_prime_UTR_premature_start_codon_location_variant
SO:0001791	SO:0001622	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001990	"A 5' UTR variant where a premature start codon is moved." [SANGER:am]	2929878	\N	\N	sequence	4	SO	exon_variant	five_prime_UTR_premature_start_codon_location_variant
SO:0001968	SO:0001622	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001990	"A 5' UTR variant where a premature start codon is moved." [SANGER:am]	2929879	\N	\N	sequence	4	SO	coding_transcript_variant	five_prime_UTR_premature_start_codon_location_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001990	"A 5' UTR variant where a premature start codon is moved." [SANGER:am]	4002919	\N	\N	sequence	5	SO	transcript_variant	five_prime_UTR_premature_start_codon_location_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001990	"A 5' UTR variant where a premature start codon is moved." [SANGER:am]	4002920	\N	\N	sequence	5	SO	transcript_variant	five_prime_UTR_premature_start_codon_location_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001990	"A 5' UTR variant where a premature start codon is moved." [SANGER:am]	4967102	\N	\N	sequence	6	SO	gene_variant	five_prime_UTR_premature_start_codon_location_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001990	"A 5' UTR variant where a premature start codon is moved." [SANGER:am]	5741627	\N	\N	sequence	7	SO	feature_variant	five_prime_UTR_premature_start_codon_location_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001990	"A 5' UTR variant where a premature start codon is moved." [SANGER:am]	6311300	\N	\N	sequence	8	SO	structural_variant	five_prime_UTR_premature_start_codon_location_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001990	"A 5' UTR variant where a premature start codon is moved." [SANGER:am]	6699535	\N	\N	sequence	9	SO	sequence_variant	five_prime_UTR_premature_start_codon_location_variant
SO:0001991	\N	\N	"A consensus AFLP fragment is an AFLP sequence produced from any alignment algorithm which uses assembled multiple AFLP sequences as input." [GMOD:ea]	SO:0001991	"A consensus AFLP fragment is an AFLP sequence produced from any alignment algorithm which uses assembled multiple AFLP sequences as input." [GMOD:ea]	46853	\N	\N	sequence	0	SO	consensus_AFLP_fragment	consensus_AFLP_fragment
SO:0000994	SO:0001991	\N	"" []	SO:0001991	"A consensus AFLP fragment is an AFLP sequence produced from any alignment algorithm which uses assembled multiple AFLP sequences as input." [GMOD:ea]	491651	\N	\N	sequence	1	SO	consensus_region	consensus_AFLP_fragment
SO:0001410	SO:0000994	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0001991	"A consensus AFLP fragment is an AFLP sequence produced from any alignment algorithm which uses assembled multiple AFLP sequences as input." [GMOD:ea]	1074311	\N	SOFA	sequence	2	SO	experimental_feature	consensus_AFLP_fragment
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001991	"A consensus AFLP fragment is an AFLP sequence produced from any alignment algorithm which uses assembled multiple AFLP sequences as input." [GMOD:ea]	1905462	SOFA	SOFA	sequence	3	SO	region	consensus_AFLP_fragment
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001991	"A consensus AFLP fragment is an AFLP sequence produced from any alignment algorithm which uses assembled multiple AFLP sequences as input." [GMOD:ea]	2929880	SOFA	SOFA	sequence	4	SO	sequence_feature	consensus_AFLP_fragment
SO:0001992	\N	\N	"A non-synonymous variant is an inframe, protein altering variant, resulting in a codon change." [SO:ke]	SO:0001992	"A non-synonymous variant is an inframe, protein altering variant, resulting in a codon change." [SO:ke]	46854	\N	\N	sequence	0	SO	nonsynonymous_variant	nonsynonymous_variant
SO:0001650	SO:0001992	\N	"A sequence variant which does not cause a disruption of the translational reading frame." [SO:ke]	SO:0001992	"A non-synonymous variant is an inframe, protein altering variant, resulting in a codon change." [SO:ke]	491652	\N	\N	sequence	1	SO	inframe_variant	nonsynonymous_variant
SO:0001818	SO:0001650	\N	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	SO:0001992	"A non-synonymous variant is an inframe, protein altering variant, resulting in a codon change." [SO:ke]	1074312	\N	\N	sequence	2	SO	protein_altering_variant	nonsynonymous_variant
SO:0001580	SO:0001818	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0001992	"A non-synonymous variant is an inframe, protein altering variant, resulting in a codon change." [SO:ke]	1905463	\N	\N	sequence	3	SO	coding_sequence_variant	nonsynonymous_variant
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0001992	"A non-synonymous variant is an inframe, protein altering variant, resulting in a codon change." [SO:ke]	2929881	\N	\N	sequence	4	SO	exon_variant	nonsynonymous_variant
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0001992	"A non-synonymous variant is an inframe, protein altering variant, resulting in a codon change." [SO:ke]	2929882	\N	\N	sequence	4	SO	coding_transcript_variant	nonsynonymous_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001992	"A non-synonymous variant is an inframe, protein altering variant, resulting in a codon change." [SO:ke]	4002921	\N	\N	sequence	5	SO	transcript_variant	nonsynonymous_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001992	"A non-synonymous variant is an inframe, protein altering variant, resulting in a codon change." [SO:ke]	4002922	\N	\N	sequence	5	SO	transcript_variant	nonsynonymous_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001992	"A non-synonymous variant is an inframe, protein altering variant, resulting in a codon change." [SO:ke]	4967103	\N	\N	sequence	6	SO	gene_variant	nonsynonymous_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001992	"A non-synonymous variant is an inframe, protein altering variant, resulting in a codon change." [SO:ke]	5741628	\N	\N	sequence	7	SO	feature_variant	nonsynonymous_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001992	"A non-synonymous variant is an inframe, protein altering variant, resulting in a codon change." [SO:ke]	6311301	\N	\N	sequence	8	SO	structural_variant	nonsynonymous_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001992	"A non-synonymous variant is an inframe, protein altering variant, resulting in a codon change." [SO:ke]	6699536	\N	\N	sequence	9	SO	sequence_variant	nonsynonymous_variant
SO:0001993	\N	\N	"Intronic positions associated with cis-splicing. Contains the first and second positions immediately before the exon and the first, second and fifth positions immediately after." [SANGER:am]	SO:0001993	"Intronic positions associated with cis-splicing. Contains the first and second positions immediately before the exon and the first, second and fifth positions immediately after." [SANGER:am]	46855	\N	\N	sequence	0	SO	extended_cis_splice_site	extended_cis_splice_site
SO:0001419	SO:0001993	\N	"Intronic 2 bp region bordering exon. A splice_site that adjacent_to exon and overlaps intron." [SO:cjm, SO:ke]	SO:0001993	"Intronic positions associated with cis-splicing. Contains the first and second positions immediately before the exon and the first, second and fifth positions immediately after." [SANGER:am]	491653	\N	SOFA	sequence	1	SO	cis_splice_site	extended_cis_splice_site
SO:0000162	SO:0001419	\N	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	SO:0001993	"Intronic positions associated with cis-splicing. Contains the first and second positions immediately before the exon and the first, second and fifth positions immediately after." [SANGER:am]	1074313	SOFA	SOFA	sequence	2	SO	splice_site	extended_cis_splice_site
SO:0000835	SO:0000162	\N	"A part of a primary transcript." [SO:ke]	SO:0001993	"Intronic positions associated with cis-splicing. Contains the first and second positions immediately before the exon and the first, second and fifth positions immediately after." [SANGER:am]	1905464	SOFA	SOFA	sequence	3	SO	primary_transcript_region	extended_cis_splice_site
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001993	"Intronic positions associated with cis-splicing. Contains the first and second positions immediately before the exon and the first, second and fifth positions immediately after." [SANGER:am]	2929883	SOFA	SOFA	sequence	4	SO	primary_transcript	extended_cis_splice_site
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0001993	"Intronic positions associated with cis-splicing. Contains the first and second positions immediately before the exon and the first, second and fifth positions immediately after." [SANGER:am]	2929884	SOFA	SOFA	sequence	4	SO	transcript_region	extended_cis_splice_site
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001993	"Intronic positions associated with cis-splicing. Contains the first and second positions immediately before the exon and the first, second and fifth positions immediately after." [SANGER:am]	4002923	SOFA	SOFA	sequence	5	SO	transcript	extended_cis_splice_site
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001993	"Intronic positions associated with cis-splicing. Contains the first and second positions immediately before the exon and the first, second and fifth positions immediately after." [SANGER:am]	4002924	SOFA	SOFA	sequence	5	SO	transcript	extended_cis_splice_site
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001993	"Intronic positions associated with cis-splicing. Contains the first and second positions immediately before the exon and the first, second and fifth positions immediately after." [SANGER:am]	4002925	SOFA	SOFA	sequence	5	SO	biological_region	extended_cis_splice_site
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001993	"Intronic positions associated with cis-splicing. Contains the first and second positions immediately before the exon and the first, second and fifth positions immediately after." [SANGER:am]	4967104	SOFA	SOFA	sequence	6	SO	gene_member_region	extended_cis_splice_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001993	"Intronic positions associated with cis-splicing. Contains the first and second positions immediately before the exon and the first, second and fifth positions immediately after." [SANGER:am]	6311302	SOFA	SOFA	sequence	8	SO	region	extended_cis_splice_site
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001993	"Intronic positions associated with cis-splicing. Contains the first and second positions immediately before the exon and the first, second and fifth positions immediately after." [SANGER:am]	5741629	SOFA	SOFA	sequence	7	SO	biological_region	extended_cis_splice_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001993	"Intronic positions associated with cis-splicing. Contains the first and second positions immediately before the exon and the first, second and fifth positions immediately after." [SANGER:am]	6550294	SOFA	SOFA	sequence	9	SO	sequence_feature	extended_cis_splice_site
SO:0001994	\N	\N	"Fifth intronic position after the intron exon boundary, close to the 5' edge of the intron." [SANGER:am]	SO:0001994	"Fifth intronic position after the intron exon boundary, close to the 5' edge of the intron." [SANGER:am]	46856	\N	\N	sequence	0	SO	intron_base_5	intron_base_5
SO:0001014	SO:0001994	\N	"" []	SO:0001994	"Fifth intronic position after the intron exon boundary, close to the 5' edge of the intron." [SANGER:am]	491654	\N	\N	sequence	1	SO	intron_domain	intron_base_5
SO:0001993	SO:0001994	\N	"Intronic positions associated with cis-splicing. Contains the first and second positions immediately before the exon and the first, second and fifth positions immediately after." [SANGER:am]	SO:0001994	"Fifth intronic position after the intron exon boundary, close to the 5' edge of the intron." [SANGER:am]	491655	\N	\N	sequence	1	SO	extended_cis_splice_site	intron_base_5
SO:0000188	SO:0001014	\N	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001994	"Fifth intronic position after the intron exon boundary, close to the 5' edge of the intron." [SANGER:am]	1074314	\N	SOFA	sequence	2	SO	intron	intron_base_5
SO:0000835	SO:0001014	\N	"A part of a primary transcript." [SO:ke]	SO:0001994	"Fifth intronic position after the intron exon boundary, close to the 5' edge of the intron." [SANGER:am]	1074315	\N	SOFA	sequence	2	SO	primary_transcript_region	intron_base_5
SO:0001419	SO:0001993	\N	"Intronic 2 bp region bordering exon. A splice_site that adjacent_to exon and overlaps intron." [SO:cjm, SO:ke]	SO:0001994	"Fifth intronic position after the intron exon boundary, close to the 5' edge of the intron." [SANGER:am]	1074316	\N	SOFA	sequence	2	SO	cis_splice_site	intron_base_5
SO:0000835	SO:0000188	\N	"A part of a primary transcript." [SO:ke]	SO:0001994	"Fifth intronic position after the intron exon boundary, close to the 5' edge of the intron." [SANGER:am]	1905465	SOFA	SOFA	sequence	3	SO	primary_transcript_region	intron_base_5
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001994	"Fifth intronic position after the intron exon boundary, close to the 5' edge of the intron." [SANGER:am]	4002928	SOFA	SOFA	sequence	5	SO	primary_transcript	intron_base_5
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0001994	"Fifth intronic position after the intron exon boundary, close to the 5' edge of the intron." [SANGER:am]	4002929	SOFA	SOFA	sequence	5	SO	transcript_region	intron_base_5
SO:0000162	SO:0001419	\N	"Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction." [SO:cjm, SO:ke]	SO:0001994	"Fifth intronic position after the intron exon boundary, close to the 5' edge of the intron." [SANGER:am]	1905468	SOFA	SOFA	sequence	3	SO	splice_site	intron_base_5
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001994	"Fifth intronic position after the intron exon boundary, close to the 5' edge of the intron." [SANGER:am]	4132343	SOFA	SOFA	sequence	6	SO	transcript	intron_base_5
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001994	"Fifth intronic position after the intron exon boundary, close to the 5' edge of the intron." [SANGER:am]	4132344	SOFA	SOFA	sequence	6	SO	transcript	intron_base_5
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001994	"Fifth intronic position after the intron exon boundary, close to the 5' edge of the intron." [SANGER:am]	4132345	SOFA	SOFA	sequence	6	SO	biological_region	intron_base_5
SO:0000835	SO:0000162	\N	"A part of a primary transcript." [SO:ke]	SO:0001994	"Fifth intronic position after the intron exon boundary, close to the 5' edge of the intron." [SANGER:am]	2929890	SOFA	SOFA	sequence	4	SO	primary_transcript_region	intron_base_5
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001994	"Fifth intronic position after the intron exon boundary, close to the 5' edge of the intron." [SANGER:am]	5180769	SOFA	SOFA	sequence	7	SO	gene_member_region	intron_base_5
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001994	"Fifth intronic position after the intron exon boundary, close to the 5' edge of the intron." [SANGER:am]	6550295	SOFA	SOFA	sequence	9	SO	region	intron_base_5
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001994	"Fifth intronic position after the intron exon boundary, close to the 5' edge of the intron." [SANGER:am]	5996467	SOFA	SOFA	sequence	8	SO	biological_region	intron_base_5
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001994	"Fifth intronic position after the intron exon boundary, close to the 5' edge of the intron." [SANGER:am]	6807617	SOFA	SOFA	sequence	10	SO	sequence_feature	intron_base_5
SO:0001995	\N	\N	"A sequence variant occurring in the intron, within 10 bases of exon." [sanger:am]	SO:0001995	"A sequence variant occurring in the intron, within 10 bases of exon." [sanger:am]	46857	\N	\N	sequence	0	SO	extended_intronic_splice_region_variant	extended_intronic_splice_region_variant
SO:0001568	SO:0001995	\N	"A sequence variant that changes the process of splicing." [SO:ke]	SO:0001995	"A sequence variant occurring in the intron, within 10 bases of exon." [sanger:am]	491656	\N	\N	sequence	1	SO	splicing_variant	extended_intronic_splice_region_variant
SO:0001576	SO:0001568	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0001995	"A sequence variant occurring in the intron, within 10 bases of exon." [sanger:am]	1074317	\N	\N	sequence	2	SO	transcript_variant	extended_intronic_splice_region_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0001995	"A sequence variant occurring in the intron, within 10 bases of exon." [sanger:am]	1905469	\N	\N	sequence	3	SO	gene_variant	extended_intronic_splice_region_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0001995	"A sequence variant occurring in the intron, within 10 bases of exon." [sanger:am]	2929891	\N	\N	sequence	4	SO	feature_variant	extended_intronic_splice_region_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0001995	"A sequence variant occurring in the intron, within 10 bases of exon." [sanger:am]	4002930	\N	\N	sequence	5	SO	structural_variant	extended_intronic_splice_region_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0001995	"A sequence variant occurring in the intron, within 10 bases of exon." [sanger:am]	4967108	\N	\N	sequence	6	SO	sequence_variant	extended_intronic_splice_region_variant
SO:0001996	\N	\N	"Region of intronic sequence within 10 bases of an exon." [SANGER:am]	SO:0001996	"Region of intronic sequence within 10 bases of an exon." [SANGER:am]	46858	\N	\N	sequence	0	SO	extended_intronic_splice_region	extended_intronic_splice_region
SO:0001014	SO:0001996	\N	"" []	SO:0001996	"Region of intronic sequence within 10 bases of an exon." [SANGER:am]	491657	\N	\N	sequence	1	SO	intron_domain	extended_intronic_splice_region
SO:0000188	SO:0001014	\N	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0001996	"Region of intronic sequence within 10 bases of an exon." [SANGER:am]	1074318	\N	SOFA	sequence	2	SO	intron	extended_intronic_splice_region
SO:0000835	SO:0001014	\N	"A part of a primary transcript." [SO:ke]	SO:0001996	"Region of intronic sequence within 10 bases of an exon." [SANGER:am]	1074319	\N	SOFA	sequence	2	SO	primary_transcript_region	extended_intronic_splice_region
SO:0000835	SO:0000188	\N	"A part of a primary transcript." [SO:ke]	SO:0001996	"Region of intronic sequence within 10 bases of an exon." [SANGER:am]	1905470	SOFA	SOFA	sequence	3	SO	primary_transcript_region	extended_intronic_splice_region
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0001996	"Region of intronic sequence within 10 bases of an exon." [SANGER:am]	2929892	SOFA	SOFA	sequence	4	SO	primary_transcript	extended_intronic_splice_region
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0001996	"Region of intronic sequence within 10 bases of an exon." [SANGER:am]	2929893	SOFA	SOFA	sequence	4	SO	transcript_region	extended_intronic_splice_region
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001996	"Region of intronic sequence within 10 bases of an exon." [SANGER:am]	3174020	SOFA	SOFA	sequence	5	SO	transcript	extended_intronic_splice_region
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0001996	"Region of intronic sequence within 10 bases of an exon." [SANGER:am]	3174021	SOFA	SOFA	sequence	5	SO	transcript	extended_intronic_splice_region
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001996	"Region of intronic sequence within 10 bases of an exon." [SANGER:am]	3174022	SOFA	SOFA	sequence	5	SO	biological_region	extended_intronic_splice_region
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0001996	"Region of intronic sequence within 10 bases of an exon." [SANGER:am]	4385885	SOFA	SOFA	sequence	6	SO	gene_member_region	extended_intronic_splice_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001996	"Region of intronic sequence within 10 bases of an exon." [SANGER:am]	6146686	SOFA	SOFA	sequence	8	SO	region	extended_intronic_splice_region
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001996	"Region of intronic sequence within 10 bases of an exon." [SANGER:am]	5407497	SOFA	SOFA	sequence	7	SO	biological_region	extended_intronic_splice_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001996	"Region of intronic sequence within 10 bases of an exon." [SANGER:am]	6469780	SOFA	SOFA	sequence	9	SO	sequence_feature	extended_intronic_splice_region
SO:0001997	\N	\N	"A heterochromatic region of the chromosome,  adjacent to the telomere (on the centromeric side) that contains repetitive DNA and sometimes genes and it is transcribed." [POMBE:al]	SO:0001997	"A heterochromatic region of the chromosome,  adjacent to the telomere (on the centromeric side) that contains repetitive DNA and sometimes genes and it is transcribed." [POMBE:al]	46859	\N	\N	sequence	0	SO	subtelomere	subtelomere
SO:0000628	SO:0001997	\N	"" []	SO:0001997	"A heterochromatic region of the chromosome,  adjacent to the telomere (on the centromeric side) that contains repetitive DNA and sometimes genes and it is transcribed." [POMBE:al]	491658	\N	SOFA	sequence	1	SO	chromosomal_structural_element	subtelomere
SO:0000830	SO:0000628	\N	"A region of a chromosome." [SO:ke]	SO:0001997	"A heterochromatic region of the chromosome,  adjacent to the telomere (on the centromeric side) that contains repetitive DNA and sometimes genes and it is transcribed." [POMBE:al]	1074320	SOFA	SOFA	sequence	2	SO	chromosome_part	subtelomere
SO:0000340	SO:0000830	\N	"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication." [SO:ma]	SO:0001997	"A heterochromatic region of the chromosome,  adjacent to the telomere (on the centromeric side) that contains repetitive DNA and sometimes genes and it is transcribed." [POMBE:al]	1905473	SOFA	SOFA	sequence	3	SO	chromosome	subtelomere
SO:0001411	SO:0000830	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001997	"A heterochromatic region of the chromosome,  adjacent to the telomere (on the centromeric side) that contains repetitive DNA and sometimes genes and it is transcribed." [POMBE:al]	1905474	SOFA	SOFA	sequence	3	SO	biological_region	subtelomere
SO:0001235	SO:0000340	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0001997	"A heterochromatic region of the chromosome,  adjacent to the telomere (on the centromeric side) that contains repetitive DNA and sometimes genes and it is transcribed." [POMBE:al]	2929897	SOFA	SOFA	sequence	4	SO	replicon	subtelomere
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001997	"A heterochromatic region of the chromosome,  adjacent to the telomere (on the centromeric side) that contains repetitive DNA and sometimes genes and it is transcribed." [POMBE:al]	4967111	SOFA	SOFA	sequence	6	SO	region	subtelomere
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001997	"A heterochromatic region of the chromosome,  adjacent to the telomere (on the centromeric side) that contains repetitive DNA and sometimes genes and it is transcribed." [POMBE:al]	4002933	SOFA	SOFA	sequence	5	SO	biological_region	subtelomere
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001997	"A heterochromatic region of the chromosome,  adjacent to the telomere (on the centromeric side) that contains repetitive DNA and sometimes genes and it is transcribed." [POMBE:al]	5180771	SOFA	SOFA	sequence	7	SO	sequence_feature	subtelomere
SO:0001998	\N	\N	"A small RNA oligo, typically about 20 bases, that guides the cas nuclease to a target DNA sequence in the CRISPR/cas mutagenesis method." [PMID:23934893]	SO:0001998	"A small RNA oligo, typically about 20 bases, that guides the cas nuclease to a target DNA sequence in the CRISPR/cas mutagenesis method." [PMID:23934893]	46860	\N	\N	sequence	0	SO	sgRNA	sgRNA
SO:0000696	SO:0001998	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0001998	"A small RNA oligo, typically about 20 bases, that guides the cas nuclease to a target DNA sequence in the CRISPR/cas mutagenesis method." [PMID:23934893]	491659	\N	SOFA	sequence	1	SO	oligo	sgRNA
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0001998	"A small RNA oligo, typically about 20 bases, that guides the cas nuclease to a target DNA sequence in the CRISPR/cas mutagenesis method." [PMID:23934893]	1074321	SOFA	SOFA	sequence	2	SO	reagent	sgRNA
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0001998	"A small RNA oligo, typically about 20 bases, that guides the cas nuclease to a target DNA sequence in the CRISPR/cas mutagenesis method." [PMID:23934893]	1905475	SOFA	SOFA	sequence	3	SO	biomaterial_region	sgRNA
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001998	"A small RNA oligo, typically about 20 bases, that guides the cas nuclease to a target DNA sequence in the CRISPR/cas mutagenesis method." [PMID:23934893]	2929899	SOFA	SOFA	sequence	4	SO	region	sgRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001998	"A small RNA oligo, typically about 20 bases, that guides the cas nuclease to a target DNA sequence in the CRISPR/cas mutagenesis method." [PMID:23934893]	4002935	SOFA	SOFA	sequence	5	SO	sequence_feature	sgRNA
SO:0001999	\N	\N	"DNA motif that is a component of a mating type region." [SO:ke]	SO:0001999	"DNA motif that is a component of a mating type region." [SO:ke]	46861	\N	\N	sequence	0	SO	mating_type_region_motif	mating_type_region_motif
SO:0000713	SO:0001999	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0001999	"DNA motif that is a component of a mating type region." [SO:ke]	491660	\N	\N	sequence	1	SO	DNA_motif	mating_type_region_motif
SO:0001789	SO:0001999	\N	"A specialized region in the genomes of some yeast and fungi, the genes of which regulate mating type." [SO:ke]	SO:0001999	"DNA motif that is a component of a mating type region." [SO:ke]	491661	\N	\N	sequence	1	SO	mating_type_region	mating_type_region_motif
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0001999	"DNA motif that is a component of a mating type region." [SO:ke]	1074322	\N	SOFA	sequence	2	SO	nucleotide_motif	mating_type_region_motif
SO:0005855	SO:0001789	\N	"A collection of related genes." [SO:ma]	SO:0001999	"DNA motif that is a component of a mating type region." [SO:ke]	1074323	\N	SOFA	sequence	2	SO	gene_group	mating_type_region_motif
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0001999	"DNA motif that is a component of a mating type region." [SO:ke]	1905476	SOFA	SOFA	sequence	3	SO	sequence_motif	mating_type_region_motif
SO:0001411	SO:0005855	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001999	"DNA motif that is a component of a mating type region." [SO:ke]	1905477	SOFA	SOFA	sequence	3	SO	biological_region	mating_type_region_motif
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0001999	"DNA motif that is a component of a mating type region." [SO:ke]	2929900	SOFA	SOFA	sequence	4	SO	biological_region	mating_type_region_motif
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0001999	"DNA motif that is a component of a mating type region." [SO:ke]	4002936	SOFA	SOFA	sequence	5	SO	region	mating_type_region_motif
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0001999	"DNA motif that is a component of a mating type region." [SO:ke]	4385887	SOFA	SOFA	sequence	6	SO	sequence_feature	mating_type_region_motif
SO:0002001	\N	\N	"A segment of non-homology between a and alpha mating alleles, found at all three mating loci (HML, MAT, and HMR), has two forms (Ya and Yalpha)." [SGD:jd]	SO:0002001	"A segment of non-homology between a and alpha mating alleles, found at all three mating loci (HML, MAT, and HMR), has two forms (Ya and Yalpha)." [SGD:jd]	46862	\N	\N	sequence	0	SO	Y_region	Y_region
SO:0001999	SO:0002001	\N	"DNA motif that is a component of a mating type region." [SO:ke]	SO:0002001	"A segment of non-homology between a and alpha mating alleles, found at all three mating loci (HML, MAT, and HMR), has two forms (Ya and Yalpha)." [SGD:jd]	491662	\N	\N	sequence	1	SO	mating_type_region_motif	Y_region
SO:0000713	SO:0001999	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0002001	"A segment of non-homology between a and alpha mating alleles, found at all three mating loci (HML, MAT, and HMR), has two forms (Ya and Yalpha)." [SGD:jd]	1074324	\N	\N	sequence	2	SO	DNA_motif	Y_region
SO:0001789	SO:0001999	\N	"A specialized region in the genomes of some yeast and fungi, the genes of which regulate mating type." [SO:ke]	SO:0002001	"A segment of non-homology between a and alpha mating alleles, found at all three mating loci (HML, MAT, and HMR), has two forms (Ya and Yalpha)." [SGD:jd]	1074325	\N	\N	sequence	2	SO	mating_type_region	Y_region
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0002001	"A segment of non-homology between a and alpha mating alleles, found at all three mating loci (HML, MAT, and HMR), has two forms (Ya and Yalpha)." [SGD:jd]	1905478	\N	SOFA	sequence	3	SO	nucleotide_motif	Y_region
SO:0005855	SO:0001789	\N	"A collection of related genes." [SO:ma]	SO:0002001	"A segment of non-homology between a and alpha mating alleles, found at all three mating loci (HML, MAT, and HMR), has two forms (Ya and Yalpha)." [SGD:jd]	1905479	\N	SOFA	sequence	3	SO	gene_group	Y_region
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0002001	"A segment of non-homology between a and alpha mating alleles, found at all three mating loci (HML, MAT, and HMR), has two forms (Ya and Yalpha)." [SGD:jd]	2929902	SOFA	SOFA	sequence	4	SO	sequence_motif	Y_region
SO:0001411	SO:0005855	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002001	"A segment of non-homology between a and alpha mating alleles, found at all three mating loci (HML, MAT, and HMR), has two forms (Ya and Yalpha)." [SGD:jd]	2929903	SOFA	SOFA	sequence	4	SO	biological_region	Y_region
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002001	"A segment of non-homology between a and alpha mating alleles, found at all three mating loci (HML, MAT, and HMR), has two forms (Ya and Yalpha)." [SGD:jd]	4002938	SOFA	SOFA	sequence	5	SO	biological_region	Y_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002001	"A segment of non-homology between a and alpha mating alleles, found at all three mating loci (HML, MAT, and HMR), has two forms (Ya and Yalpha)." [SGD:jd]	4967112	SOFA	SOFA	sequence	6	SO	region	Y_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002001	"A segment of non-homology between a and alpha mating alleles, found at all three mating loci (HML, MAT, and HMR), has two forms (Ya and Yalpha)." [SGD:jd]	5407499	SOFA	SOFA	sequence	7	SO	sequence_feature	Y_region
SO:0002002	\N	\N	"A mating type region motif, one of two segments of homology found at all three mating loci (HML, MAT, and HMR)." [SGD:jd]	SO:0002002	"A mating type region motif, one of two segments of homology found at all three mating loci (HML, MAT, and HMR)." [SGD:jd]	46863	\N	\N	sequence	0	SO	Z1_region	Z1_region
SO:0001999	SO:0002002	\N	"DNA motif that is a component of a mating type region." [SO:ke]	SO:0002002	"A mating type region motif, one of two segments of homology found at all three mating loci (HML, MAT, and HMR)." [SGD:jd]	491663	\N	\N	sequence	1	SO	mating_type_region_motif	Z1_region
SO:0000713	SO:0001999	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0002002	"A mating type region motif, one of two segments of homology found at all three mating loci (HML, MAT, and HMR)." [SGD:jd]	1074326	\N	\N	sequence	2	SO	DNA_motif	Z1_region
SO:0001789	SO:0001999	\N	"A specialized region in the genomes of some yeast and fungi, the genes of which regulate mating type." [SO:ke]	SO:0002002	"A mating type region motif, one of two segments of homology found at all three mating loci (HML, MAT, and HMR)." [SGD:jd]	1074327	\N	\N	sequence	2	SO	mating_type_region	Z1_region
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0002002	"A mating type region motif, one of two segments of homology found at all three mating loci (HML, MAT, and HMR)." [SGD:jd]	1905480	\N	SOFA	sequence	3	SO	nucleotide_motif	Z1_region
SO:0005855	SO:0001789	\N	"A collection of related genes." [SO:ma]	SO:0002002	"A mating type region motif, one of two segments of homology found at all three mating loci (HML, MAT, and HMR)." [SGD:jd]	1905481	\N	SOFA	sequence	3	SO	gene_group	Z1_region
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0002002	"A mating type region motif, one of two segments of homology found at all three mating loci (HML, MAT, and HMR)." [SGD:jd]	2929904	SOFA	SOFA	sequence	4	SO	sequence_motif	Z1_region
SO:0001411	SO:0005855	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002002	"A mating type region motif, one of two segments of homology found at all three mating loci (HML, MAT, and HMR)." [SGD:jd]	2929905	SOFA	SOFA	sequence	4	SO	biological_region	Z1_region
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002002	"A mating type region motif, one of two segments of homology found at all three mating loci (HML, MAT, and HMR)." [SGD:jd]	4002940	SOFA	SOFA	sequence	5	SO	biological_region	Z1_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002002	"A mating type region motif, one of two segments of homology found at all three mating loci (HML, MAT, and HMR)." [SGD:jd]	4967114	SOFA	SOFA	sequence	6	SO	region	Z1_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002002	"A mating type region motif, one of two segments of homology found at all three mating loci (HML, MAT, and HMR)." [SGD:jd]	5407500	SOFA	SOFA	sequence	7	SO	sequence_feature	Z1_region
SO:0002003	\N	\N	"A mating type region motif, the rightmost segment of homology in the HML and MAT mating loci (not present in HMR)." [SGD:jd]	SO:0002003	"A mating type region motif, the rightmost segment of homology in the HML and MAT mating loci (not present in HMR)." [SGD:jd]	46864	\N	\N	sequence	0	SO	Z2_region	Z2_region
SO:0001999	SO:0002003	\N	"DNA motif that is a component of a mating type region." [SO:ke]	SO:0002003	"A mating type region motif, the rightmost segment of homology in the HML and MAT mating loci (not present in HMR)." [SGD:jd]	491664	\N	\N	sequence	1	SO	mating_type_region_motif	Z2_region
SO:0000713	SO:0001999	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0002003	"A mating type region motif, the rightmost segment of homology in the HML and MAT mating loci (not present in HMR)." [SGD:jd]	1074328	\N	\N	sequence	2	SO	DNA_motif	Z2_region
SO:0001789	SO:0001999	\N	"A specialized region in the genomes of some yeast and fungi, the genes of which regulate mating type." [SO:ke]	SO:0002003	"A mating type region motif, the rightmost segment of homology in the HML and MAT mating loci (not present in HMR)." [SGD:jd]	1074329	\N	\N	sequence	2	SO	mating_type_region	Z2_region
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0002003	"A mating type region motif, the rightmost segment of homology in the HML and MAT mating loci (not present in HMR)." [SGD:jd]	1905482	\N	SOFA	sequence	3	SO	nucleotide_motif	Z2_region
SO:0005855	SO:0001789	\N	"A collection of related genes." [SO:ma]	SO:0002003	"A mating type region motif, the rightmost segment of homology in the HML and MAT mating loci (not present in HMR)." [SGD:jd]	1905483	\N	SOFA	sequence	3	SO	gene_group	Z2_region
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0002003	"A mating type region motif, the rightmost segment of homology in the HML and MAT mating loci (not present in HMR)." [SGD:jd]	2929906	SOFA	SOFA	sequence	4	SO	sequence_motif	Z2_region
SO:0001411	SO:0005855	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002003	"A mating type region motif, the rightmost segment of homology in the HML and MAT mating loci (not present in HMR)." [SGD:jd]	2929907	SOFA	SOFA	sequence	4	SO	biological_region	Z2_region
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002003	"A mating type region motif, the rightmost segment of homology in the HML and MAT mating loci (not present in HMR)." [SGD:jd]	4002942	SOFA	SOFA	sequence	5	SO	biological_region	Z2_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002003	"A mating type region motif, the rightmost segment of homology in the HML and MAT mating loci (not present in HMR)." [SGD:jd]	4967116	SOFA	SOFA	sequence	6	SO	region	Z2_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002003	"A mating type region motif, the rightmost segment of homology in the HML and MAT mating loci (not present in HMR)." [SGD:jd]	5407501	SOFA	SOFA	sequence	7	SO	sequence_feature	Z2_region
SO:0002004	\N	\N	"The ACS is an 11-bp sequence of the form 5'-WTTTAYRTTTW-3' which is at the core of every yeast ARS, and is necessary but not sufficient for recognition and binding by the origin recognition complex (ORC). Functional ARSs require an ACS, as well as other cis elements in the 5' (C domain) and 3' (B domain) flanking sequences of the ACS." [SGD:jd]	SO:0002004	"The ACS is an 11-bp sequence of the form 5'-WTTTAYRTTTW-3' which is at the core of every yeast ARS, and is necessary but not sufficient for recognition and binding by the origin recognition complex (ORC). Functional ARSs require an ACS, as well as other cis elements in the 5' (C domain) and 3' (B domain) flanking sequences of the ACS." [SGD:jd]	46865	\N	\N	sequence	0	SO	ARS_consensus_sequence	ARS_consensus_sequence
SO:0000436	SO:0002004	\N	"A sequence that can autonomously replicate, as a plasmid, when transformed into a bacterial host." [SO:ma]	SO:0002004	"The ACS is an 11-bp sequence of the form 5'-WTTTAYRTTTW-3' which is at the core of every yeast ARS, and is necessary but not sufficient for recognition and binding by the origin recognition complex (ORC). Functional ARSs require an ACS, as well as other cis elements in the 5' (C domain) and 3' (B domain) flanking sequences of the ACS." [SGD:jd]	491665	\N	SOFA	sequence	1	SO	ARS	ARS_consensus_sequence
SO:0000713	SO:0002004	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0002004	"The ACS is an 11-bp sequence of the form 5'-WTTTAYRTTTW-3' which is at the core of every yeast ARS, and is necessary but not sufficient for recognition and binding by the origin recognition complex (ORC). Functional ARSs require an ACS, as well as other cis elements in the 5' (C domain) and 3' (B domain) flanking sequences of the ACS." [SGD:jd]	491666	\N	\N	sequence	1	SO	DNA_motif	ARS_consensus_sequence
SO:0000296	SO:0000436	\N	"The origin of replication; starting site for duplication of a nucleic acid molecule to give two identical copies." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0002004	"The ACS is an 11-bp sequence of the form 5'-WTTTAYRTTTW-3' which is at the core of every yeast ARS, and is necessary but not sufficient for recognition and binding by the origin recognition complex (ORC). Functional ARSs require an ACS, as well as other cis elements in the 5' (C domain) and 3' (B domain) flanking sequences of the ACS." [SGD:jd]	1074330	SOFA	SOFA	sequence	2	SO	origin_of_replication	ARS_consensus_sequence
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0002004	"The ACS is an 11-bp sequence of the form 5'-WTTTAYRTTTW-3' which is at the core of every yeast ARS, and is necessary but not sufficient for recognition and binding by the origin recognition complex (ORC). Functional ARSs require an ACS, as well as other cis elements in the 5' (C domain) and 3' (B domain) flanking sequences of the ACS." [SGD:jd]	1074331	\N	SOFA	sequence	2	SO	nucleotide_motif	ARS_consensus_sequence
SO:0001235	SO:0000296	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0002004	"The ACS is an 11-bp sequence of the form 5'-WTTTAYRTTTW-3' which is at the core of every yeast ARS, and is necessary but not sufficient for recognition and binding by the origin recognition complex (ORC). Functional ARSs require an ACS, as well as other cis elements in the 5' (C domain) and 3' (B domain) flanking sequences of the ACS." [SGD:jd]	1905484	SOFA	SOFA	sequence	3	SO	replicon	ARS_consensus_sequence
SO:0001411	SO:0000296	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002004	"The ACS is an 11-bp sequence of the form 5'-WTTTAYRTTTW-3' which is at the core of every yeast ARS, and is necessary but not sufficient for recognition and binding by the origin recognition complex (ORC). Functional ARSs require an ACS, as well as other cis elements in the 5' (C domain) and 3' (B domain) flanking sequences of the ACS." [SGD:jd]	1905485	SOFA	SOFA	sequence	3	SO	biological_region	ARS_consensus_sequence
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0002004	"The ACS is an 11-bp sequence of the form 5'-WTTTAYRTTTW-3' which is at the core of every yeast ARS, and is necessary but not sufficient for recognition and binding by the origin recognition complex (ORC). Functional ARSs require an ACS, as well as other cis elements in the 5' (C domain) and 3' (B domain) flanking sequences of the ACS." [SGD:jd]	1905486	SOFA	SOFA	sequence	3	SO	sequence_motif	ARS_consensus_sequence
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002004	"The ACS is an 11-bp sequence of the form 5'-WTTTAYRTTTW-3' which is at the core of every yeast ARS, and is necessary but not sufficient for recognition and binding by the origin recognition complex (ORC). Functional ARSs require an ACS, as well as other cis elements in the 5' (C domain) and 3' (B domain) flanking sequences of the ACS." [SGD:jd]	2929908	SOFA	SOFA	sequence	4	SO	biological_region	ARS_consensus_sequence
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002004	"The ACS is an 11-bp sequence of the form 5'-WTTTAYRTTTW-3' which is at the core of every yeast ARS, and is necessary but not sufficient for recognition and binding by the origin recognition complex (ORC). Functional ARSs require an ACS, as well as other cis elements in the 5' (C domain) and 3' (B domain) flanking sequences of the ACS." [SGD:jd]	4002944	SOFA	SOFA	sequence	5	SO	region	ARS_consensus_sequence
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002004	"The ACS is an 11-bp sequence of the form 5'-WTTTAYRTTTW-3' which is at the core of every yeast ARS, and is necessary but not sufficient for recognition and binding by the origin recognition complex (ORC). Functional ARSs require an ACS, as well as other cis elements in the 5' (C domain) and 3' (B domain) flanking sequences of the ACS." [SGD:jd]	2929910	SOFA	SOFA	sequence	4	SO	biological_region	ARS_consensus_sequence
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002004	"The ACS is an 11-bp sequence of the form 5'-WTTTAYRTTTW-3' which is at the core of every yeast ARS, and is necessary but not sufficient for recognition and binding by the origin recognition complex (ORC). Functional ARSs require an ACS, as well as other cis elements in the 5' (C domain) and 3' (B domain) flanking sequences of the ACS." [SGD:jd]	4385888	SOFA	SOFA	sequence	6	SO	sequence_feature	ARS_consensus_sequence
SO:0002005	\N	\N	"The determinant of selective removal (DSR) motif consists of repeats of U(U/C)AAAC. The motif targets meiotic transcripts for removal during mitosis via the exosome." [PMID:22645662]	SO:0002005	"The determinant of selective removal (DSR) motif consists of repeats of U(U/C)AAAC. The motif targets meiotic transcripts for removal during mitosis via the exosome." [PMID:22645662]	46866	\N	\N	sequence	0	SO	DSR_motif	DSR_motif
SO:0000713	SO:0002005	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0002005	"The determinant of selective removal (DSR) motif consists of repeats of U(U/C)AAAC. The motif targets meiotic transcripts for removal during mitosis via the exosome." [PMID:22645662]	491667	\N	\N	sequence	1	SO	DNA_motif	DSR_motif
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0002005	"The determinant of selective removal (DSR) motif consists of repeats of U(U/C)AAAC. The motif targets meiotic transcripts for removal during mitosis via the exosome." [PMID:22645662]	1074332	\N	SOFA	sequence	2	SO	nucleotide_motif	DSR_motif
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0002005	"The determinant of selective removal (DSR) motif consists of repeats of U(U/C)AAAC. The motif targets meiotic transcripts for removal during mitosis via the exosome." [PMID:22645662]	1905487	SOFA	SOFA	sequence	3	SO	sequence_motif	DSR_motif
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002005	"The determinant of selective removal (DSR) motif consists of repeats of U(U/C)AAAC. The motif targets meiotic transcripts for removal during mitosis via the exosome." [PMID:22645662]	2929911	SOFA	SOFA	sequence	4	SO	biological_region	DSR_motif
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002005	"The determinant of selective removal (DSR) motif consists of repeats of U(U/C)AAAC. The motif targets meiotic transcripts for removal during mitosis via the exosome." [PMID:22645662]	4002946	SOFA	SOFA	sequence	5	SO	region	DSR_motif
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002005	"The determinant of selective removal (DSR) motif consists of repeats of U(U/C)AAAC. The motif targets meiotic transcripts for removal during mitosis via the exosome." [PMID:22645662]	4967118	SOFA	SOFA	sequence	6	SO	sequence_feature	DSR_motif
SO:0002006	\N	\N	"A promoter element that has the consensus sequence GNMGATC, and is found in promoters of genes repressed in the presence of zinc." [PMID:24003116, POMBE:mh]	SO:0002006	"A promoter element that has the consensus sequence GNMGATC, and is found in promoters of genes repressed in the presence of zinc." [PMID:24003116, POMBE:mh]	46867	\N	\N	sequence	0	SO	zinc_repressed_element	zinc_repressed_element
SO:0001659	SO:0002006	\N	"" []	SO:0002006	"A promoter element that has the consensus sequence GNMGATC, and is found in promoters of genes repressed in the presence of zinc." [PMID:24003116, POMBE:mh]	491668	\N	\N	sequence	1	SO	promoter_element	zinc_repressed_element
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0002006	"A promoter element that has the consensus sequence GNMGATC, and is found in promoters of genes repressed in the presence of zinc." [PMID:24003116, POMBE:mh]	1074333	\N	\N	sequence	2	SO	DNA_motif	zinc_repressed_element
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0002006	"A promoter element that has the consensus sequence GNMGATC, and is found in promoters of genes repressed in the presence of zinc." [PMID:24003116, POMBE:mh]	1905488	\N	SOFA	sequence	3	SO	nucleotide_motif	zinc_repressed_element
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0002006	"A promoter element that has the consensus sequence GNMGATC, and is found in promoters of genes repressed in the presence of zinc." [PMID:24003116, POMBE:mh]	2929912	SOFA	SOFA	sequence	4	SO	sequence_motif	zinc_repressed_element
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002006	"A promoter element that has the consensus sequence GNMGATC, and is found in promoters of genes repressed in the presence of zinc." [PMID:24003116, POMBE:mh]	4002947	SOFA	SOFA	sequence	5	SO	biological_region	zinc_repressed_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002006	"A promoter element that has the consensus sequence GNMGATC, and is found in promoters of genes repressed in the presence of zinc." [PMID:24003116, POMBE:mh]	4967119	SOFA	SOFA	sequence	6	SO	region	zinc_repressed_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002006	"A promoter element that has the consensus sequence GNMGATC, and is found in promoters of genes repressed in the presence of zinc." [PMID:24003116, POMBE:mh]	5741632	SOFA	SOFA	sequence	7	SO	sequence_feature	zinc_repressed_element
SO:0002007	\N	\N	"An MNV is a multiple nucleotide variant (substitution) in which the inserted sequence is the same length as the replaced sequence." [NCBI:th]	SO:0002007	"An MNV is a multiple nucleotide variant (substitution) in which the inserted sequence is the same length as the replaced sequence." [NCBI:th]	46868	\N	\N	sequence	0	SO	MNV	MNV
SO:1000002	SO:0002007	\N	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	SO:0002007	"An MNV is a multiple nucleotide variant (substitution) in which the inserted sequence is the same length as the replaced sequence." [NCBI:th]	491669	\N	SOFA	sequence	1	SO	substitution	MNV
SO:0001059	SO:1000002	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0002007	"An MNV is a multiple nucleotide variant (substitution) in which the inserted sequence is the same length as the replaced sequence." [NCBI:th]	1074334	SOFA	SOFA	sequence	2	SO	sequence_alteration	MNV
SO:0001411	SO:1000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002007	"An MNV is a multiple nucleotide variant (substitution) in which the inserted sequence is the same length as the replaced sequence." [NCBI:th]	1074335	SOFA	SOFA	sequence	2	SO	biological_region	MNV
SO:0002072	SO:0001059	\N	"" []	SO:0002007	"An MNV is a multiple nucleotide variant (substitution) in which the inserted sequence is the same length as the replaced sequence." [NCBI:th]	1905489	SOFA	\N	sequence	3	SO	sequence_comparison	MNV
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002007	"An MNV is a multiple nucleotide variant (substitution) in which the inserted sequence is the same length as the replaced sequence." [NCBI:th]	1905490	SOFA	SOFA	sequence	3	SO	region	MNV
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002007	"An MNV is a multiple nucleotide variant (substitution) in which the inserted sequence is the same length as the replaced sequence." [NCBI:th]	2929913	\N	SOFA	sequence	4	SO	sequence_feature	MNV
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002007	"An MNV is a multiple nucleotide variant (substitution) in which the inserted sequence is the same length as the replaced sequence." [NCBI:th]	2929914	SOFA	SOFA	sequence	4	SO	sequence_feature	MNV
SO:0002008	\N	\N	"A sequence variant whereby at least one base of a codon encoding a rare amino acid is changed, resulting in a different encoded amino acid." [SO:ke]	SO:0002008	"A sequence variant whereby at least one base of a codon encoding a rare amino acid is changed, resulting in a different encoded amino acid." [SO:ke]	46869	\N	\N	sequence	0	SO	rare_amino_acid_variant	rare_amino_acid_variant
SO:0001586	SO:0002008	\N	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for an amino acid with different biochemical properties." [SO:ke]	SO:0002008	"A sequence variant whereby at least one base of a codon encoding a rare amino acid is changed, resulting in a different encoded amino acid." [SO:ke]	491670	\N	\N	sequence	1	SO	non_conservative_missense_variant	rare_amino_acid_variant
SO:0001583	SO:0001586	\N	"A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preserved." [EBI:fc, EBI:gr, SO:ke]	SO:0002008	"A sequence variant whereby at least one base of a codon encoding a rare amino acid is changed, resulting in a different encoded amino acid." [SO:ke]	1074336	\N	\N	sequence	2	SO	missense_variant	rare_amino_acid_variant
SO:0001992	SO:0001583	\N	"A non-synonymous variant is an inframe, protein altering variant, resulting in a codon change." [SO:ke]	SO:0002008	"A sequence variant whereby at least one base of a codon encoding a rare amino acid is changed, resulting in a different encoded amino acid." [SO:ke]	1905491	\N	\N	sequence	3	SO	nonsynonymous_variant	rare_amino_acid_variant
SO:0001650	SO:0001992	\N	"A sequence variant which does not cause a disruption of the translational reading frame." [SO:ke]	SO:0002008	"A sequence variant whereby at least one base of a codon encoding a rare amino acid is changed, resulting in a different encoded amino acid." [SO:ke]	2929915	\N	\N	sequence	4	SO	inframe_variant	rare_amino_acid_variant
SO:0001818	SO:0001650	\N	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	SO:0002008	"A sequence variant whereby at least one base of a codon encoding a rare amino acid is changed, resulting in a different encoded amino acid." [SO:ke]	4002948	\N	\N	sequence	5	SO	protein_altering_variant	rare_amino_acid_variant
SO:0001580	SO:0001818	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0002008	"A sequence variant whereby at least one base of a codon encoding a rare amino acid is changed, resulting in a different encoded amino acid." [SO:ke]	4967120	\N	\N	sequence	6	SO	coding_sequence_variant	rare_amino_acid_variant
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0002008	"A sequence variant whereby at least one base of a codon encoding a rare amino acid is changed, resulting in a different encoded amino acid." [SO:ke]	5741633	\N	\N	sequence	7	SO	exon_variant	rare_amino_acid_variant
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0002008	"A sequence variant whereby at least one base of a codon encoding a rare amino acid is changed, resulting in a different encoded amino acid." [SO:ke]	5741634	\N	\N	sequence	7	SO	coding_transcript_variant	rare_amino_acid_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002008	"A sequence variant whereby at least one base of a codon encoding a rare amino acid is changed, resulting in a different encoded amino acid." [SO:ke]	6311303	\N	\N	sequence	8	SO	transcript_variant	rare_amino_acid_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002008	"A sequence variant whereby at least one base of a codon encoding a rare amino acid is changed, resulting in a different encoded amino acid." [SO:ke]	6311304	\N	\N	sequence	8	SO	transcript_variant	rare_amino_acid_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0002008	"A sequence variant whereby at least one base of a codon encoding a rare amino acid is changed, resulting in a different encoded amino acid." [SO:ke]	6699537	\N	\N	sequence	9	SO	gene_variant	rare_amino_acid_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002008	"A sequence variant whereby at least one base of a codon encoding a rare amino acid is changed, resulting in a different encoded amino acid." [SO:ke]	6948201	\N	\N	sequence	10	SO	feature_variant	rare_amino_acid_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002008	"A sequence variant whereby at least one base of a codon encoding a rare amino acid is changed, resulting in a different encoded amino acid." [SO:ke]	7105159	\N	\N	sequence	11	SO	structural_variant	rare_amino_acid_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002008	"A sequence variant whereby at least one base of a codon encoding a rare amino acid is changed, resulting in a different encoded amino acid." [SO:ke]	7209847	\N	\N	sequence	12	SO	sequence_variant	rare_amino_acid_variant
SO:0002009	\N	\N	"A sequence variant whereby at least one base of a codon encoding selenocysteine  is changed, resulting in a different encoded amino acid." [SO:ke]	SO:0002009	"A sequence variant whereby at least one base of a codon encoding selenocysteine  is changed, resulting in a different encoded amino acid." [SO:ke]	46870	\N	\N	sequence	0	SO	selenocysteine_loss	selenocysteine_loss
SO:0002008	SO:0002009	\N	"A sequence variant whereby at least one base of a codon encoding a rare amino acid is changed, resulting in a different encoded amino acid." [SO:ke]	SO:0002009	"A sequence variant whereby at least one base of a codon encoding selenocysteine  is changed, resulting in a different encoded amino acid." [SO:ke]	491671	\N	\N	sequence	1	SO	rare_amino_acid_variant	selenocysteine_loss
SO:0001586	SO:0002008	\N	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for an amino acid with different biochemical properties." [SO:ke]	SO:0002009	"A sequence variant whereby at least one base of a codon encoding selenocysteine  is changed, resulting in a different encoded amino acid." [SO:ke]	1074337	\N	\N	sequence	2	SO	non_conservative_missense_variant	selenocysteine_loss
SO:0001583	SO:0001586	\N	"A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preserved." [EBI:fc, EBI:gr, SO:ke]	SO:0002009	"A sequence variant whereby at least one base of a codon encoding selenocysteine  is changed, resulting in a different encoded amino acid." [SO:ke]	1905492	\N	\N	sequence	3	SO	missense_variant	selenocysteine_loss
SO:0001992	SO:0001583	\N	"A non-synonymous variant is an inframe, protein altering variant, resulting in a codon change." [SO:ke]	SO:0002009	"A sequence variant whereby at least one base of a codon encoding selenocysteine  is changed, resulting in a different encoded amino acid." [SO:ke]	2929916	\N	\N	sequence	4	SO	nonsynonymous_variant	selenocysteine_loss
SO:0001650	SO:0001992	\N	"A sequence variant which does not cause a disruption of the translational reading frame." [SO:ke]	SO:0002009	"A sequence variant whereby at least one base of a codon encoding selenocysteine  is changed, resulting in a different encoded amino acid." [SO:ke]	4002949	\N	\N	sequence	5	SO	inframe_variant	selenocysteine_loss
SO:0001818	SO:0001650	\N	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	SO:0002009	"A sequence variant whereby at least one base of a codon encoding selenocysteine  is changed, resulting in a different encoded amino acid." [SO:ke]	4967121	\N	\N	sequence	6	SO	protein_altering_variant	selenocysteine_loss
SO:0001580	SO:0001818	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0002009	"A sequence variant whereby at least one base of a codon encoding selenocysteine  is changed, resulting in a different encoded amino acid." [SO:ke]	5741635	\N	\N	sequence	7	SO	coding_sequence_variant	selenocysteine_loss
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0002009	"A sequence variant whereby at least one base of a codon encoding selenocysteine  is changed, resulting in a different encoded amino acid." [SO:ke]	6311305	\N	\N	sequence	8	SO	exon_variant	selenocysteine_loss
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0002009	"A sequence variant whereby at least one base of a codon encoding selenocysteine  is changed, resulting in a different encoded amino acid." [SO:ke]	6311306	\N	\N	sequence	8	SO	coding_transcript_variant	selenocysteine_loss
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002009	"A sequence variant whereby at least one base of a codon encoding selenocysteine  is changed, resulting in a different encoded amino acid." [SO:ke]	6699538	\N	\N	sequence	9	SO	transcript_variant	selenocysteine_loss
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002009	"A sequence variant whereby at least one base of a codon encoding selenocysteine  is changed, resulting in a different encoded amino acid." [SO:ke]	6699539	\N	\N	sequence	9	SO	transcript_variant	selenocysteine_loss
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0002009	"A sequence variant whereby at least one base of a codon encoding selenocysteine  is changed, resulting in a different encoded amino acid." [SO:ke]	6948202	\N	\N	sequence	10	SO	gene_variant	selenocysteine_loss
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002009	"A sequence variant whereby at least one base of a codon encoding selenocysteine  is changed, resulting in a different encoded amino acid." [SO:ke]	7105160	\N	\N	sequence	11	SO	feature_variant	selenocysteine_loss
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002009	"A sequence variant whereby at least one base of a codon encoding selenocysteine  is changed, resulting in a different encoded amino acid." [SO:ke]	7209848	\N	\N	sequence	12	SO	structural_variant	selenocysteine_loss
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002009	"A sequence variant whereby at least one base of a codon encoding selenocysteine  is changed, resulting in a different encoded amino acid." [SO:ke]	7287712	\N	\N	sequence	13	SO	sequence_variant	selenocysteine_loss
SO:0002010	\N	\N	"A sequence variant whereby at least one base of a codon encoding pyrrolysine is changed, resulting in a different encoded amino acid." [SO:ke]	SO:0002010	"A sequence variant whereby at least one base of a codon encoding pyrrolysine is changed, resulting in a different encoded amino acid." [SO:ke]	46871	\N	\N	sequence	0	SO	pyrrolysine_loss	pyrrolysine_loss
SO:0002008	SO:0002010	\N	"A sequence variant whereby at least one base of a codon encoding a rare amino acid is changed, resulting in a different encoded amino acid." [SO:ke]	SO:0002010	"A sequence variant whereby at least one base of a codon encoding pyrrolysine is changed, resulting in a different encoded amino acid." [SO:ke]	491672	\N	\N	sequence	1	SO	rare_amino_acid_variant	pyrrolysine_loss
SO:0001586	SO:0002008	\N	"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for an amino acid with different biochemical properties." [SO:ke]	SO:0002010	"A sequence variant whereby at least one base of a codon encoding pyrrolysine is changed, resulting in a different encoded amino acid." [SO:ke]	1074338	\N	\N	sequence	2	SO	non_conservative_missense_variant	pyrrolysine_loss
SO:0001583	SO:0001586	\N	"A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preserved." [EBI:fc, EBI:gr, SO:ke]	SO:0002010	"A sequence variant whereby at least one base of a codon encoding pyrrolysine is changed, resulting in a different encoded amino acid." [SO:ke]	1905493	\N	\N	sequence	3	SO	missense_variant	pyrrolysine_loss
SO:0001992	SO:0001583	\N	"A non-synonymous variant is an inframe, protein altering variant, resulting in a codon change." [SO:ke]	SO:0002010	"A sequence variant whereby at least one base of a codon encoding pyrrolysine is changed, resulting in a different encoded amino acid." [SO:ke]	2929917	\N	\N	sequence	4	SO	nonsynonymous_variant	pyrrolysine_loss
SO:0001650	SO:0001992	\N	"A sequence variant which does not cause a disruption of the translational reading frame." [SO:ke]	SO:0002010	"A sequence variant whereby at least one base of a codon encoding pyrrolysine is changed, resulting in a different encoded amino acid." [SO:ke]	4002950	\N	\N	sequence	5	SO	inframe_variant	pyrrolysine_loss
SO:0001818	SO:0001650	\N	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	SO:0002010	"A sequence variant whereby at least one base of a codon encoding pyrrolysine is changed, resulting in a different encoded amino acid." [SO:ke]	4967122	\N	\N	sequence	6	SO	protein_altering_variant	pyrrolysine_loss
SO:0001580	SO:0001818	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0002010	"A sequence variant whereby at least one base of a codon encoding pyrrolysine is changed, resulting in a different encoded amino acid." [SO:ke]	5741636	\N	\N	sequence	7	SO	coding_sequence_variant	pyrrolysine_loss
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0002010	"A sequence variant whereby at least one base of a codon encoding pyrrolysine is changed, resulting in a different encoded amino acid." [SO:ke]	6311307	\N	\N	sequence	8	SO	exon_variant	pyrrolysine_loss
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0002010	"A sequence variant whereby at least one base of a codon encoding pyrrolysine is changed, resulting in a different encoded amino acid." [SO:ke]	6311308	\N	\N	sequence	8	SO	coding_transcript_variant	pyrrolysine_loss
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002010	"A sequence variant whereby at least one base of a codon encoding pyrrolysine is changed, resulting in a different encoded amino acid." [SO:ke]	6699540	\N	\N	sequence	9	SO	transcript_variant	pyrrolysine_loss
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002010	"A sequence variant whereby at least one base of a codon encoding pyrrolysine is changed, resulting in a different encoded amino acid." [SO:ke]	6699541	\N	\N	sequence	9	SO	transcript_variant	pyrrolysine_loss
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0002010	"A sequence variant whereby at least one base of a codon encoding pyrrolysine is changed, resulting in a different encoded amino acid." [SO:ke]	6948203	\N	\N	sequence	10	SO	gene_variant	pyrrolysine_loss
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002010	"A sequence variant whereby at least one base of a codon encoding pyrrolysine is changed, resulting in a different encoded amino acid." [SO:ke]	7105161	\N	\N	sequence	11	SO	feature_variant	pyrrolysine_loss
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002010	"A sequence variant whereby at least one base of a codon encoding pyrrolysine is changed, resulting in a different encoded amino acid." [SO:ke]	7209849	\N	\N	sequence	12	SO	structural_variant	pyrrolysine_loss
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002010	"A sequence variant whereby at least one base of a codon encoding pyrrolysine is changed, resulting in a different encoded amino acid." [SO:ke]	7287713	\N	\N	sequence	13	SO	sequence_variant	pyrrolysine_loss
SO:0002011	\N	\N	"A variant that occurs within a gene but falls outside of all transcript features. This occurs when alternate transcripts of a gene do not share overlapping  sequence." [SO:ke]	SO:0002011	"A variant that occurs within a gene but falls outside of all transcript features. This occurs when alternate transcripts of a gene do not share overlapping  sequence." [SO:ke]	46872	\N	\N	sequence	0	SO	intragenic_variant	intragenic_variant
SO:0001576	SO:0002011	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002011	"A variant that occurs within a gene but falls outside of all transcript features. This occurs when alternate transcripts of a gene do not share overlapping  sequence." [SO:ke]	491673	\N	\N	sequence	1	SO	transcript_variant	intragenic_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0002011	"A variant that occurs within a gene but falls outside of all transcript features. This occurs when alternate transcripts of a gene do not share overlapping  sequence." [SO:ke]	1074339	\N	\N	sequence	2	SO	gene_variant	intragenic_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002011	"A variant that occurs within a gene but falls outside of all transcript features. This occurs when alternate transcripts of a gene do not share overlapping  sequence." [SO:ke]	1905494	\N	\N	sequence	3	SO	feature_variant	intragenic_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002011	"A variant that occurs within a gene but falls outside of all transcript features. This occurs when alternate transcripts of a gene do not share overlapping  sequence." [SO:ke]	2929918	\N	\N	sequence	4	SO	structural_variant	intragenic_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002011	"A variant that occurs within a gene but falls outside of all transcript features. This occurs when alternate transcripts of a gene do not share overlapping  sequence." [SO:ke]	4002951	\N	\N	sequence	5	SO	sequence_variant	intragenic_variant
SO:0002012	\N	\N	"A codon variant that changes at least one base of the canonical start codon." [SO:ke]	SO:0002012	"A codon variant that changes at least one base of the canonical start codon." [SO:ke]	46873	\N	\N	sequence	0	SO	start_lost	start_lost
SO:0001582	SO:0002012	\N	"A codon variant that changes at least one base of the first codon of a transcript." [SO:ke]	SO:0002012	"A codon variant that changes at least one base of the canonical start codon." [SO:ke]	491674	\N	\N	sequence	1	SO	initiator_codon_variant	start_lost
SO:0001992	SO:0002012	\N	"A non-synonymous variant is an inframe, protein altering variant, resulting in a codon change." [SO:ke]	SO:0002012	"A codon variant that changes at least one base of the canonical start codon." [SO:ke]	491675	\N	\N	sequence	1	SO	nonsynonymous_variant	start_lost
SO:0001580	SO:0001582	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0002012	"A codon variant that changes at least one base of the canonical start codon." [SO:ke]	1074340	\N	\N	sequence	2	SO	coding_sequence_variant	start_lost
SO:0001650	SO:0001992	\N	"A sequence variant which does not cause a disruption of the translational reading frame." [SO:ke]	SO:0002012	"A codon variant that changes at least one base of the canonical start codon." [SO:ke]	1074341	\N	\N	sequence	2	SO	inframe_variant	start_lost
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0002012	"A codon variant that changes at least one base of the canonical start codon." [SO:ke]	4002953	\N	\N	sequence	5	SO	exon_variant	start_lost
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0002012	"A codon variant that changes at least one base of the canonical start codon." [SO:ke]	4002954	\N	\N	sequence	5	SO	coding_transcript_variant	start_lost
SO:0001818	SO:0001650	\N	"A sequence_variant which is predicted to change the protein encoded in the coding sequence." [EBI:gr]	SO:0002012	"A codon variant that changes at least one base of the canonical start codon." [SO:ke]	1905497	\N	\N	sequence	3	SO	protein_altering_variant	start_lost
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002012	"A codon variant that changes at least one base of the canonical start codon." [SO:ke]	4132346	\N	\N	sequence	6	SO	transcript_variant	start_lost
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002012	"A codon variant that changes at least one base of the canonical start codon." [SO:ke]	4132347	\N	\N	sequence	6	SO	transcript_variant	start_lost
SO:0001580	SO:0001818	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0002012	"A codon variant that changes at least one base of the canonical start codon." [SO:ke]	2929921	\N	\N	sequence	4	SO	coding_sequence_variant	start_lost
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0002012	"A codon variant that changes at least one base of the canonical start codon." [SO:ke]	5180772	\N	\N	sequence	7	SO	gene_variant	start_lost
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002012	"A codon variant that changes at least one base of the canonical start codon." [SO:ke]	5996470	\N	\N	sequence	8	SO	feature_variant	start_lost
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002012	"A codon variant that changes at least one base of the canonical start codon." [SO:ke]	6550296	\N	\N	sequence	9	SO	structural_variant	start_lost
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002012	"A codon variant that changes at least one base of the canonical start codon." [SO:ke]	6888945	\N	\N	sequence	10	SO	sequence_variant	start_lost
SO:0002013	\N	\N	"A sequence variant that causes the reduction of a the 5'UTR  with regard to the reference sequence." [SO:ke]	SO:0002013	"A sequence variant that causes the reduction of a the 5'UTR  with regard to the reference sequence." [SO:ke]	46874	\N	\N	sequence	0	SO	5_prime_UTR_truncation	5_prime_UTR_truncation
SO:0001623	SO:0002013	\N	"A UTR variant of the 5' UTR." [SO:ke]	SO:0002013	"A sequence variant that causes the reduction of a the 5'UTR  with regard to the reference sequence." [SO:ke]	491676	\N	\N	sequence	1	SO	5_prime_UTR_variant	5_prime_UTR_truncation
SO:0001622	SO:0001623	\N	"A transcript variant that is located within the UTR." [SO:ke]	SO:0002013	"A sequence variant that causes the reduction of a the 5'UTR  with regard to the reference sequence." [SO:ke]	1074342	\N	\N	sequence	2	SO	UTR_variant	5_prime_UTR_truncation
SO:0001791	SO:0001622	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0002013	"A sequence variant that causes the reduction of a the 5'UTR  with regard to the reference sequence." [SO:ke]	1905498	\N	\N	sequence	3	SO	exon_variant	5_prime_UTR_truncation
SO:0001968	SO:0001622	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0002013	"A sequence variant that causes the reduction of a the 5'UTR  with regard to the reference sequence." [SO:ke]	1905499	\N	\N	sequence	3	SO	coding_transcript_variant	5_prime_UTR_truncation
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002013	"A sequence variant that causes the reduction of a the 5'UTR  with regard to the reference sequence." [SO:ke]	2929922	\N	\N	sequence	4	SO	transcript_variant	5_prime_UTR_truncation
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002013	"A sequence variant that causes the reduction of a the 5'UTR  with regard to the reference sequence." [SO:ke]	2929923	\N	\N	sequence	4	SO	transcript_variant	5_prime_UTR_truncation
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0002013	"A sequence variant that causes the reduction of a the 5'UTR  with regard to the reference sequence." [SO:ke]	4002955	\N	\N	sequence	5	SO	gene_variant	5_prime_UTR_truncation
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002013	"A sequence variant that causes the reduction of a the 5'UTR  with regard to the reference sequence." [SO:ke]	4967124	\N	\N	sequence	6	SO	feature_variant	5_prime_UTR_truncation
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002013	"A sequence variant that causes the reduction of a the 5'UTR  with regard to the reference sequence." [SO:ke]	5741638	\N	\N	sequence	7	SO	structural_variant	5_prime_UTR_truncation
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002013	"A sequence variant that causes the reduction of a the 5'UTR  with regard to the reference sequence." [SO:ke]	6311310	\N	\N	sequence	8	SO	sequence_variant	5_prime_UTR_truncation
SO:0002014	\N	\N	"A sequence variant that causes the extension of 5' UTR, with regard to the reference sequence." [SO:ke]	SO:0002014	"A sequence variant that causes the extension of 5' UTR, with regard to the reference sequence." [SO:ke]	46875	\N	\N	sequence	0	SO	5_prime_UTR_elongation	5_prime_UTR_elongation
SO:0001623	SO:0002014	\N	"A UTR variant of the 5' UTR." [SO:ke]	SO:0002014	"A sequence variant that causes the extension of 5' UTR, with regard to the reference sequence." [SO:ke]	491677	\N	\N	sequence	1	SO	5_prime_UTR_variant	5_prime_UTR_elongation
SO:0001622	SO:0001623	\N	"A transcript variant that is located within the UTR." [SO:ke]	SO:0002014	"A sequence variant that causes the extension of 5' UTR, with regard to the reference sequence." [SO:ke]	1074343	\N	\N	sequence	2	SO	UTR_variant	5_prime_UTR_elongation
SO:0001791	SO:0001622	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0002014	"A sequence variant that causes the extension of 5' UTR, with regard to the reference sequence." [SO:ke]	1905500	\N	\N	sequence	3	SO	exon_variant	5_prime_UTR_elongation
SO:0001968	SO:0001622	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0002014	"A sequence variant that causes the extension of 5' UTR, with regard to the reference sequence." [SO:ke]	1905501	\N	\N	sequence	3	SO	coding_transcript_variant	5_prime_UTR_elongation
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002014	"A sequence variant that causes the extension of 5' UTR, with regard to the reference sequence." [SO:ke]	2929924	\N	\N	sequence	4	SO	transcript_variant	5_prime_UTR_elongation
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002014	"A sequence variant that causes the extension of 5' UTR, with regard to the reference sequence." [SO:ke]	2929925	\N	\N	sequence	4	SO	transcript_variant	5_prime_UTR_elongation
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0002014	"A sequence variant that causes the extension of 5' UTR, with regard to the reference sequence." [SO:ke]	4002956	\N	\N	sequence	5	SO	gene_variant	5_prime_UTR_elongation
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002014	"A sequence variant that causes the extension of 5' UTR, with regard to the reference sequence." [SO:ke]	4967125	\N	\N	sequence	6	SO	feature_variant	5_prime_UTR_elongation
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002014	"A sequence variant that causes the extension of 5' UTR, with regard to the reference sequence." [SO:ke]	5741639	\N	\N	sequence	7	SO	structural_variant	5_prime_UTR_elongation
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002014	"A sequence variant that causes the extension of 5' UTR, with regard to the reference sequence." [SO:ke]	6311311	\N	\N	sequence	8	SO	sequence_variant	5_prime_UTR_elongation
SO:0002015	\N	\N	"A sequence variant that causes the reduction of a the 3' UTR  with regard to the reference sequence." [SO:ke]	SO:0002015	"A sequence variant that causes the reduction of a the 3' UTR  with regard to the reference sequence." [SO:ke]	46876	\N	\N	sequence	0	SO	3_prime_UTR_truncation	3_prime_UTR_truncation
SO:0001624	SO:0002015	\N	"A UTR variant of the 3' UTR." [SO:ke]	SO:0002015	"A sequence variant that causes the reduction of a the 3' UTR  with regard to the reference sequence." [SO:ke]	491678	\N	\N	sequence	1	SO	3_prime_UTR_variant	3_prime_UTR_truncation
SO:0001622	SO:0001624	\N	"A transcript variant that is located within the UTR." [SO:ke]	SO:0002015	"A sequence variant that causes the reduction of a the 3' UTR  with regard to the reference sequence." [SO:ke]	1074344	\N	\N	sequence	2	SO	UTR_variant	3_prime_UTR_truncation
SO:0001791	SO:0001622	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0002015	"A sequence variant that causes the reduction of a the 3' UTR  with regard to the reference sequence." [SO:ke]	1905502	\N	\N	sequence	3	SO	exon_variant	3_prime_UTR_truncation
SO:0001968	SO:0001622	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0002015	"A sequence variant that causes the reduction of a the 3' UTR  with regard to the reference sequence." [SO:ke]	1905503	\N	\N	sequence	3	SO	coding_transcript_variant	3_prime_UTR_truncation
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002015	"A sequence variant that causes the reduction of a the 3' UTR  with regard to the reference sequence." [SO:ke]	2929926	\N	\N	sequence	4	SO	transcript_variant	3_prime_UTR_truncation
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002015	"A sequence variant that causes the reduction of a the 3' UTR  with regard to the reference sequence." [SO:ke]	2929927	\N	\N	sequence	4	SO	transcript_variant	3_prime_UTR_truncation
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0002015	"A sequence variant that causes the reduction of a the 3' UTR  with regard to the reference sequence." [SO:ke]	4002957	\N	\N	sequence	5	SO	gene_variant	3_prime_UTR_truncation
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002015	"A sequence variant that causes the reduction of a the 3' UTR  with regard to the reference sequence." [SO:ke]	4967126	\N	\N	sequence	6	SO	feature_variant	3_prime_UTR_truncation
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002015	"A sequence variant that causes the reduction of a the 3' UTR  with regard to the reference sequence." [SO:ke]	5741640	\N	\N	sequence	7	SO	structural_variant	3_prime_UTR_truncation
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002015	"A sequence variant that causes the reduction of a the 3' UTR  with regard to the reference sequence." [SO:ke]	6311312	\N	\N	sequence	8	SO	sequence_variant	3_prime_UTR_truncation
SO:0002016	\N	\N	"A sequence variant that causes the extension of 3' UTR, with regard to the reference sequence." [SO:ke]	SO:0002016	"A sequence variant that causes the extension of 3' UTR, with regard to the reference sequence." [SO:ke]	46877	\N	\N	sequence	0	SO	3_prime_UTR_elongation	3_prime_UTR_elongation
SO:0001624	SO:0002016	\N	"A UTR variant of the 3' UTR." [SO:ke]	SO:0002016	"A sequence variant that causes the extension of 3' UTR, with regard to the reference sequence." [SO:ke]	491679	\N	\N	sequence	1	SO	3_prime_UTR_variant	3_prime_UTR_elongation
SO:0001622	SO:0001624	\N	"A transcript variant that is located within the UTR." [SO:ke]	SO:0002016	"A sequence variant that causes the extension of 3' UTR, with regard to the reference sequence." [SO:ke]	1074345	\N	\N	sequence	2	SO	UTR_variant	3_prime_UTR_elongation
SO:0001791	SO:0001622	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0002016	"A sequence variant that causes the extension of 3' UTR, with regard to the reference sequence." [SO:ke]	1905504	\N	\N	sequence	3	SO	exon_variant	3_prime_UTR_elongation
SO:0001968	SO:0001622	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0002016	"A sequence variant that causes the extension of 3' UTR, with regard to the reference sequence." [SO:ke]	1905505	\N	\N	sequence	3	SO	coding_transcript_variant	3_prime_UTR_elongation
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002016	"A sequence variant that causes the extension of 3' UTR, with regard to the reference sequence." [SO:ke]	2929928	\N	\N	sequence	4	SO	transcript_variant	3_prime_UTR_elongation
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002016	"A sequence variant that causes the extension of 3' UTR, with regard to the reference sequence." [SO:ke]	2929929	\N	\N	sequence	4	SO	transcript_variant	3_prime_UTR_elongation
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0002016	"A sequence variant that causes the extension of 3' UTR, with regard to the reference sequence." [SO:ke]	4002958	\N	\N	sequence	5	SO	gene_variant	3_prime_UTR_elongation
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002016	"A sequence variant that causes the extension of 3' UTR, with regard to the reference sequence." [SO:ke]	4967127	\N	\N	sequence	6	SO	feature_variant	3_prime_UTR_elongation
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002016	"A sequence variant that causes the extension of 3' UTR, with regard to the reference sequence." [SO:ke]	5741641	\N	\N	sequence	7	SO	structural_variant	3_prime_UTR_elongation
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002016	"A sequence variant that causes the extension of 3' UTR, with regard to the reference sequence." [SO:ke]	6311313	\N	\N	sequence	8	SO	sequence_variant	3_prime_UTR_elongation
SO:0002017	\N	\N	"A sequence variant located in a conserved intergenic region, between genes." [SO:ke]	SO:0002017	"A sequence variant located in a conserved intergenic region, between genes." [SO:ke]	46878	\N	\N	sequence	0	SO	conserved_intergenic_variant	conserved_intergenic_variant
SO:0001628	SO:0002017	\N	"A sequence variant located in the intergenic region, between genes." [SO:ke]	SO:0002017	"A sequence variant located in a conserved intergenic region, between genes." [SO:ke]	491680	\N	\N	sequence	1	SO	intergenic_variant	conserved_intergenic_variant
SO:0001878	SO:0001628	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002017	"A sequence variant located in a conserved intergenic region, between genes." [SO:ke]	1074346	\N	\N	sequence	2	SO	feature_variant	conserved_intergenic_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002017	"A sequence variant located in a conserved intergenic region, between genes." [SO:ke]	1905506	\N	\N	sequence	3	SO	structural_variant	conserved_intergenic_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002017	"A sequence variant located in a conserved intergenic region, between genes." [SO:ke]	2929930	\N	\N	sequence	4	SO	sequence_variant	conserved_intergenic_variant
SO:0002018	\N	\N	"A transcript variant occurring within a conserved region of an intron." [SO:ke]	SO:0002018	"A transcript variant occurring within a conserved region of an intron." [SO:ke]	46879	\N	\N	sequence	0	SO	conserved_intron_variant	conserved_intron_variant
SO:0001627	SO:0002018	\N	"A transcript variant occurring within an intron." [SO:ke]	SO:0002018	"A transcript variant occurring within a conserved region of an intron." [SO:ke]	491681	\N	\N	sequence	1	SO	intron_variant	conserved_intron_variant
SO:0001576	SO:0001627	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002018	"A transcript variant occurring within a conserved region of an intron." [SO:ke]	1074347	\N	\N	sequence	2	SO	transcript_variant	conserved_intron_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0002018	"A transcript variant occurring within a conserved region of an intron." [SO:ke]	1905507	\N	\N	sequence	3	SO	gene_variant	conserved_intron_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002018	"A transcript variant occurring within a conserved region of an intron." [SO:ke]	2929931	\N	\N	sequence	4	SO	feature_variant	conserved_intron_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002018	"A transcript variant occurring within a conserved region of an intron." [SO:ke]	4002959	\N	\N	sequence	5	SO	structural_variant	conserved_intron_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002018	"A transcript variant occurring within a conserved region of an intron." [SO:ke]	4967128	\N	\N	sequence	6	SO	sequence_variant	conserved_intron_variant
SO:0002019	\N	\N	"A sequence variant where at least one base in the start codon is changed, but the start remains." [SO:ke]	SO:0002019	"A sequence variant where at least one base in the start codon is changed, but the start remains." [SO:ke]	46880	\N	\N	sequence	0	SO	start_retained_variant	start_retained_variant
SO:0001582	SO:0002019	\N	"A codon variant that changes at least one base of the first codon of a transcript." [SO:ke]	SO:0002019	"A sequence variant where at least one base in the start codon is changed, but the start remains." [SO:ke]	491682	\N	\N	sequence	1	SO	initiator_codon_variant	start_retained_variant
SO:0001819	SO:0002019	\N	"A sequence variant where there is no resulting change to the encoded amino acid." [SO:ke]	SO:0002019	"A sequence variant where at least one base in the start codon is changed, but the start remains." [SO:ke]	491683	\N	\N	sequence	1	SO	synonymous_variant	start_retained_variant
SO:0001580	SO:0001582	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0002019	"A sequence variant where at least one base in the start codon is changed, but the start remains." [SO:ke]	1074348	\N	\N	sequence	2	SO	coding_sequence_variant	start_retained_variant
SO:0001580	SO:0001819	\N	"A sequence variant that changes the coding sequence." [SO:ke]	SO:0002019	"A sequence variant where at least one base in the start codon is changed, but the start remains." [SO:ke]	1074349	\N	\N	sequence	2	SO	coding_sequence_variant	start_retained_variant
SO:0001791	SO:0001580	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0002019	"A sequence variant where at least one base in the start codon is changed, but the start remains." [SO:ke]	1905508	\N	\N	sequence	3	SO	exon_variant	start_retained_variant
SO:0001968	SO:0001580	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0002019	"A sequence variant where at least one base in the start codon is changed, but the start remains." [SO:ke]	1905509	\N	\N	sequence	3	SO	coding_transcript_variant	start_retained_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002019	"A sequence variant where at least one base in the start codon is changed, but the start remains." [SO:ke]	2929932	\N	\N	sequence	4	SO	transcript_variant	start_retained_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002019	"A sequence variant where at least one base in the start codon is changed, but the start remains." [SO:ke]	2929933	\N	\N	sequence	4	SO	transcript_variant	start_retained_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0002019	"A sequence variant where at least one base in the start codon is changed, but the start remains." [SO:ke]	4002960	\N	\N	sequence	5	SO	gene_variant	start_retained_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002019	"A sequence variant where at least one base in the start codon is changed, but the start remains." [SO:ke]	4967129	\N	\N	sequence	6	SO	feature_variant	start_retained_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002019	"A sequence variant where at least one base in the start codon is changed, but the start remains." [SO:ke]	5741642	\N	\N	sequence	7	SO	structural_variant	start_retained_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002019	"A sequence variant where at least one base in the start codon is changed, but the start remains." [SO:ke]	6311314	\N	\N	sequence	8	SO	sequence_variant	start_retained_variant
SO:0002020	\N	\N	"Boundary elements are DNA motifs that prevent heterochromatin from spreading into neighboring euchromatic regions." [PMID:24013502]	SO:0002020	"Boundary elements are DNA motifs that prevent heterochromatin from spreading into neighboring euchromatic regions." [PMID:24013502]	46881	\N	\N	sequence	0	SO	boundary_element	boundary_element
SO:0000713	SO:0002020	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0002020	"Boundary elements are DNA motifs that prevent heterochromatin from spreading into neighboring euchromatic regions." [PMID:24013502]	491684	\N	\N	sequence	1	SO	DNA_motif	boundary_element
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0002020	"Boundary elements are DNA motifs that prevent heterochromatin from spreading into neighboring euchromatic regions." [PMID:24013502]	1074350	\N	SOFA	sequence	2	SO	nucleotide_motif	boundary_element
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0002020	"Boundary elements are DNA motifs that prevent heterochromatin from spreading into neighboring euchromatic regions." [PMID:24013502]	1905510	SOFA	SOFA	sequence	3	SO	sequence_motif	boundary_element
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002020	"Boundary elements are DNA motifs that prevent heterochromatin from spreading into neighboring euchromatic regions." [PMID:24013502]	2929934	SOFA	SOFA	sequence	4	SO	biological_region	boundary_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002020	"Boundary elements are DNA motifs that prevent heterochromatin from spreading into neighboring euchromatic regions." [PMID:24013502]	4002961	SOFA	SOFA	sequence	5	SO	region	boundary_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002020	"Boundary elements are DNA motifs that prevent heterochromatin from spreading into neighboring euchromatic regions." [PMID:24013502]	4967130	SOFA	SOFA	sequence	6	SO	sequence_feature	boundary_element
SO:0002021	\N	\N	"A DNA motif that is found in eukaryotic rDNA repeats, and is a site of replication fork pausing." [PMID:17614787]	SO:0002021	"A DNA motif that is found in eukaryotic rDNA repeats, and is a site of replication fork pausing." [PMID:17614787]	46882	\N	\N	sequence	0	SO	mating_type_region_replication_fork_barrier	mating_type_region_replication_fork_barrier
SO:0000713	SO:0002021	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0002021	"A DNA motif that is found in eukaryotic rDNA repeats, and is a site of replication fork pausing." [PMID:17614787]	491685	\N	\N	sequence	1	SO	DNA_motif	mating_type_region_replication_fork_barrier
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0002021	"A DNA motif that is found in eukaryotic rDNA repeats, and is a site of replication fork pausing." [PMID:17614787]	1074351	\N	SOFA	sequence	2	SO	nucleotide_motif	mating_type_region_replication_fork_barrier
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0002021	"A DNA motif that is found in eukaryotic rDNA repeats, and is a site of replication fork pausing." [PMID:17614787]	1905511	SOFA	SOFA	sequence	3	SO	sequence_motif	mating_type_region_replication_fork_barrier
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002021	"A DNA motif that is found in eukaryotic rDNA repeats, and is a site of replication fork pausing." [PMID:17614787]	2929935	SOFA	SOFA	sequence	4	SO	biological_region	mating_type_region_replication_fork_barrier
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002021	"A DNA motif that is found in eukaryotic rDNA repeats, and is a site of replication fork pausing." [PMID:17614787]	4002962	SOFA	SOFA	sequence	5	SO	region	mating_type_region_replication_fork_barrier
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002021	"A DNA motif that is found in eukaryotic rDNA repeats, and is a site of replication fork pausing." [PMID:17614787]	4967131	SOFA	SOFA	sequence	6	SO	sequence_feature	mating_type_region_replication_fork_barrier
SO:0002022	\N	\N	"A small RNA molecule, 22-23 nt in size, that is the product of a longer RNA. The production of priRNAs is independent of dicer and involves binding of RNA by argonaute and trimming by triman. In fission yeast, priRNAs trigger the establishment of heterochromatin. PriRNAs are primarily generated from centromeric transcripts (dg and dh repeats), but may also be produced from degradation products of primary transcripts." [PMID:20178743, PMID:24095277, PomBase:al]	SO:0002022	"A small RNA molecule, 22-23 nt in size, that is the product of a longer RNA. The production of priRNAs is independent of dicer and involves binding of RNA by argonaute and trimming by triman. In fission yeast, priRNAs trigger the establishment of heterochromatin. PriRNAs are primarily generated from centromeric transcripts (dg and dh repeats), but may also be produced from degradation products of primary transcripts." [PMID:20178743, PMID:24095277, PomBase:al]	46883	\N	\N	sequence	0	SO	priRNA	priRNA
SO:0000655	SO:0002022	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0002022	"A small RNA molecule, 22-23 nt in size, that is the product of a longer RNA. The production of priRNAs is independent of dicer and involves binding of RNA by argonaute and trimming by triman. In fission yeast, priRNAs trigger the establishment of heterochromatin. PriRNAs are primarily generated from centromeric transcripts (dg and dh repeats), but may also be produced from degradation products of primary transcripts." [PMID:20178743, PMID:24095277, PomBase:al]	491686	\N	SOFA	sequence	1	SO	ncRNA	priRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0002022	"A small RNA molecule, 22-23 nt in size, that is the product of a longer RNA. The production of priRNAs is independent of dicer and involves binding of RNA by argonaute and trimming by triman. In fission yeast, priRNAs trigger the establishment of heterochromatin. PriRNAs are primarily generated from centromeric transcripts (dg and dh repeats), but may also be produced from degradation products of primary transcripts." [PMID:20178743, PMID:24095277, PomBase:al]	1074352	SOFA	SOFA	sequence	2	SO	mature_transcript	priRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002022	"A small RNA molecule, 22-23 nt in size, that is the product of a longer RNA. The production of priRNAs is independent of dicer and involves binding of RNA by argonaute and trimming by triman. In fission yeast, priRNAs trigger the establishment of heterochromatin. PriRNAs are primarily generated from centromeric transcripts (dg and dh repeats), but may also be produced from degradation products of primary transcripts." [PMID:20178743, PMID:24095277, PomBase:al]	1905512	SOFA	SOFA	sequence	3	SO	transcript	priRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002022	"A small RNA molecule, 22-23 nt in size, that is the product of a longer RNA. The production of priRNAs is independent of dicer and involves binding of RNA by argonaute and trimming by triman. In fission yeast, priRNAs trigger the establishment of heterochromatin. PriRNAs are primarily generated from centromeric transcripts (dg and dh repeats), but may also be produced from degradation products of primary transcripts." [PMID:20178743, PMID:24095277, PomBase:al]	2929936	SOFA	SOFA	sequence	4	SO	gene_member_region	priRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002022	"A small RNA molecule, 22-23 nt in size, that is the product of a longer RNA. The production of priRNAs is independent of dicer and involves binding of RNA by argonaute and trimming by triman. In fission yeast, priRNAs trigger the establishment of heterochromatin. PriRNAs are primarily generated from centromeric transcripts (dg and dh repeats), but may also be produced from degradation products of primary transcripts." [PMID:20178743, PMID:24095277, PomBase:al]	4002963	SOFA	SOFA	sequence	5	SO	biological_region	priRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002022	"A small RNA molecule, 22-23 nt in size, that is the product of a longer RNA. The production of priRNAs is independent of dicer and involves binding of RNA by argonaute and trimming by triman. In fission yeast, priRNAs trigger the establishment of heterochromatin. PriRNAs are primarily generated from centromeric transcripts (dg and dh repeats), but may also be produced from degradation products of primary transcripts." [PMID:20178743, PMID:24095277, PomBase:al]	4967132	SOFA	SOFA	sequence	6	SO	region	priRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002022	"A small RNA molecule, 22-23 nt in size, that is the product of a longer RNA. The production of priRNAs is independent of dicer and involves binding of RNA by argonaute and trimming by triman. In fission yeast, priRNAs trigger the establishment of heterochromatin. PriRNAs are primarily generated from centromeric transcripts (dg and dh repeats), but may also be produced from degradation products of primary transcripts." [PMID:20178743, PMID:24095277, PomBase:al]	5741643	SOFA	SOFA	sequence	7	SO	sequence_feature	priRNA
SO:0002023	\N	\N	"A nucleic tag which is used in a ligation step of library preparation process to allow pooling of samples while maintaining ability to identify individual source material and creation of a multiplexed library." [OBO:prs, PMID:22574170]	SO:0002023	"A nucleic tag which is used in a ligation step of library preparation process to allow pooling of samples while maintaining ability to identify individual source material and creation of a multiplexed library." [OBO:prs, PMID:22574170]	46884	\N	\N	sequence	0	SO	multiplexing_sequence_identifier	multiplexing_sequence_identifier
SO:0000324	SO:0002023	\N	"A nucleotide sequence that may be used to identify a larger sequence." [SO:ke]	SO:0002023	"A nucleic tag which is used in a ligation step of library preparation process to allow pooling of samples while maintaining ability to identify individual source material and creation of a multiplexed library." [OBO:prs, PMID:22574170]	491687	\N	SOFA	sequence	1	SO	tag	multiplexing_sequence_identifier
SO:0000696	SO:0000324	\N	"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded." [SO:ma]	SO:0002023	"A nucleic tag which is used in a ligation step of library preparation process to allow pooling of samples while maintaining ability to identify individual source material and creation of a multiplexed library." [OBO:prs, PMID:22574170]	1074353	SOFA	SOFA	sequence	2	SO	oligo	multiplexing_sequence_identifier
SO:0000695	SO:0000696	\N	"A sequence used in experiment." [SO:ke]	SO:0002023	"A nucleic tag which is used in a ligation step of library preparation process to allow pooling of samples while maintaining ability to identify individual source material and creation of a multiplexed library." [OBO:prs, PMID:22574170]	1905513	SOFA	SOFA	sequence	3	SO	reagent	multiplexing_sequence_identifier
SO:0001409	SO:0000695	\N	"A region which is intended for use in an experiment." [SO:cb]	SO:0002023	"A nucleic tag which is used in a ligation step of library preparation process to allow pooling of samples while maintaining ability to identify individual source material and creation of a multiplexed library." [OBO:prs, PMID:22574170]	2929937	SOFA	SOFA	sequence	4	SO	biomaterial_region	multiplexing_sequence_identifier
SO:0000001	SO:0001409	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002023	"A nucleic tag which is used in a ligation step of library preparation process to allow pooling of samples while maintaining ability to identify individual source material and creation of a multiplexed library." [OBO:prs, PMID:22574170]	4002964	SOFA	SOFA	sequence	5	SO	region	multiplexing_sequence_identifier
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002023	"A nucleic tag which is used in a ligation step of library preparation process to allow pooling of samples while maintaining ability to identify individual source material and creation of a multiplexed library." [OBO:prs, PMID:22574170]	4967133	SOFA	SOFA	sequence	6	SO	sequence_feature	multiplexing_sequence_identifier
SO:0002024	\N	\N	"The leftmost segment of homology in the HML and MAT mating loci,  but not present in HMR." [SGD:jd]	SO:0002024	"The leftmost segment of homology in the HML and MAT mating loci,  but not present in HMR." [SGD:jd]	46885	\N	\N	sequence	0	SO	W_region	W_region
SO:0001999	SO:0002024	\N	"DNA motif that is a component of a mating type region." [SO:ke]	SO:0002024	"The leftmost segment of homology in the HML and MAT mating loci,  but not present in HMR." [SGD:jd]	491688	\N	\N	sequence	1	SO	mating_type_region_motif	W_region
SO:0000713	SO:0001999	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0002024	"The leftmost segment of homology in the HML and MAT mating loci,  but not present in HMR." [SGD:jd]	1074354	\N	\N	sequence	2	SO	DNA_motif	W_region
SO:0001789	SO:0001999	\N	"A specialized region in the genomes of some yeast and fungi, the genes of which regulate mating type." [SO:ke]	SO:0002024	"The leftmost segment of homology in the HML and MAT mating loci,  but not present in HMR." [SGD:jd]	1074355	\N	\N	sequence	2	SO	mating_type_region	W_region
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0002024	"The leftmost segment of homology in the HML and MAT mating loci,  but not present in HMR." [SGD:jd]	1905514	\N	SOFA	sequence	3	SO	nucleotide_motif	W_region
SO:0005855	SO:0001789	\N	"A collection of related genes." [SO:ma]	SO:0002024	"The leftmost segment of homology in the HML and MAT mating loci,  but not present in HMR." [SGD:jd]	1905515	\N	SOFA	sequence	3	SO	gene_group	W_region
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0002024	"The leftmost segment of homology in the HML and MAT mating loci,  but not present in HMR." [SGD:jd]	2929938	SOFA	SOFA	sequence	4	SO	sequence_motif	W_region
SO:0001411	SO:0005855	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002024	"The leftmost segment of homology in the HML and MAT mating loci,  but not present in HMR." [SGD:jd]	2929939	SOFA	SOFA	sequence	4	SO	biological_region	W_region
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002024	"The leftmost segment of homology in the HML and MAT mating loci,  but not present in HMR." [SGD:jd]	4002965	SOFA	SOFA	sequence	5	SO	biological_region	W_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002024	"The leftmost segment of homology in the HML and MAT mating loci,  but not present in HMR." [SGD:jd]	4967134	SOFA	SOFA	sequence	6	SO	region	W_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002024	"The leftmost segment of homology in the HML and MAT mating loci,  but not present in HMR." [SGD:jd]	5407502	SOFA	SOFA	sequence	7	SO	sequence_feature	W_region
SO:0002025	\N	\N	"A genome region where chromosome pairing occurs preferentially during homologous chromosome pairing during early meiotic prophase of Meiosis I." [PMID:22582262, PMID:23117617, PMID:24173580, PomBase:vw]	SO:0002025	"A genome region where chromosome pairing occurs preferentially during homologous chromosome pairing during early meiotic prophase of Meiosis I." [PMID:22582262, PMID:23117617, PMID:24173580, PomBase:vw]	46886	\N	\N	sequence	0	SO	cis_acting_homologous_chromosome_pairing_region	cis_acting_homologous_chromosome_pairing_region
SO:0000713	SO:0002025	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0002025	"A genome region where chromosome pairing occurs preferentially during homologous chromosome pairing during early meiotic prophase of Meiosis I." [PMID:22582262, PMID:23117617, PMID:24173580, PomBase:vw]	491689	\N	\N	sequence	1	SO	DNA_motif	cis_acting_homologous_chromosome_pairing_region
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0002025	"A genome region where chromosome pairing occurs preferentially during homologous chromosome pairing during early meiotic prophase of Meiosis I." [PMID:22582262, PMID:23117617, PMID:24173580, PomBase:vw]	1074356	\N	SOFA	sequence	2	SO	nucleotide_motif	cis_acting_homologous_chromosome_pairing_region
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0002025	"A genome region where chromosome pairing occurs preferentially during homologous chromosome pairing during early meiotic prophase of Meiosis I." [PMID:22582262, PMID:23117617, PMID:24173580, PomBase:vw]	1905516	SOFA	SOFA	sequence	3	SO	sequence_motif	cis_acting_homologous_chromosome_pairing_region
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002025	"A genome region where chromosome pairing occurs preferentially during homologous chromosome pairing during early meiotic prophase of Meiosis I." [PMID:22582262, PMID:23117617, PMID:24173580, PomBase:vw]	2929940	SOFA	SOFA	sequence	4	SO	biological_region	cis_acting_homologous_chromosome_pairing_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002025	"A genome region where chromosome pairing occurs preferentially during homologous chromosome pairing during early meiotic prophase of Meiosis I." [PMID:22582262, PMID:23117617, PMID:24173580, PomBase:vw]	4002967	SOFA	SOFA	sequence	5	SO	region	cis_acting_homologous_chromosome_pairing_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002025	"A genome region where chromosome pairing occurs preferentially during homologous chromosome pairing during early meiotic prophase of Meiosis I." [PMID:22582262, PMID:23117617, PMID:24173580, PomBase:vw]	4967136	SOFA	SOFA	sequence	6	SO	sequence_feature	cis_acting_homologous_chromosome_pairing_region
SO:0002026	\N	\N	"The nucleotide sequence which encodes the intein portion of the precursor gene." [PMID:8165123]	SO:0002026	"The nucleotide sequence which encodes the intein portion of the precursor gene." [PMID:8165123]	46887	\N	\N	sequence	0	SO	intein_encoding_region	intein_encoding_region
SO:0000842	SO:0002026	\N	"" []	SO:0002026	"The nucleotide sequence which encodes the intein portion of the precursor gene." [PMID:8165123]	491690	\N	SOFA	sequence	1	SO	gene_component_region	intein_encoding_region
SO:0000704	SO:0000842	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0002026	"The nucleotide sequence which encodes the intein portion of the precursor gene." [PMID:8165123]	1074357	SOFA	SOFA	sequence	2	SO	gene	intein_encoding_region
SO:0001411	SO:0000842	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002026	"The nucleotide sequence which encodes the intein portion of the precursor gene." [PMID:8165123]	1074358	SOFA	SOFA	sequence	2	SO	biological_region	intein_encoding_region
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002026	"The nucleotide sequence which encodes the intein portion of the precursor gene." [PMID:8165123]	1905517	SOFA	SOFA	sequence	3	SO	biological_region	intein_encoding_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002026	"The nucleotide sequence which encodes the intein portion of the precursor gene." [PMID:8165123]	2929941	SOFA	SOFA	sequence	4	SO	region	intein_encoding_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002026	"The nucleotide sequence which encodes the intein portion of the precursor gene." [PMID:8165123]	3174023	SOFA	SOFA	sequence	5	SO	sequence_feature	intein_encoding_region
SO:0002027	\N	\N	"A short open reading frame that is found in the 5' untranslated region of an mRNA and plays a role in translational regulation." [PMID:12890013, PMID:16153175, POMBASE:mah]	SO:0002027	"A short open reading frame that is found in the 5' untranslated region of an mRNA and plays a role in translational regulation." [PMID:12890013, PMID:16153175, POMBASE:mah]	46888	\N	\N	sequence	0	SO	uORF	uORF
SO:0000236	SO:0002027	\N	"The in-frame interval between the stop codons of a reading frame which when read as sequential triplets, has the potential of encoding a sequential string of amino acids. TER(NNN)nTER." [SGD:rb, SO:ma]	SO:0002027	"A short open reading frame that is found in the 5' untranslated region of an mRNA and plays a role in translational regulation." [PMID:12890013, PMID:16153175, POMBASE:mah]	491691	\N	SOFA	sequence	1	SO	ORF	uORF
SO:0000717	SO:0000236	\N	"A nucleic acid sequence that when read as sequential triplets, has the potential of encoding a sequential string of amino acids. It need not contain the start or stop codon." [SGD:rb]	SO:0002027	"A short open reading frame that is found in the 5' untranslated region of an mRNA and plays a role in translational regulation." [PMID:12890013, PMID:16153175, POMBASE:mah]	1074359	SOFA	SOFA	sequence	2	SO	reading_frame	uORF
SO:0001410	SO:0000717	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0002027	"A short open reading frame that is found in the 5' untranslated region of an mRNA and plays a role in translational regulation." [PMID:12890013, PMID:16153175, POMBASE:mah]	1905519	SOFA	SOFA	sequence	3	SO	experimental_feature	uORF
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002027	"A short open reading frame that is found in the 5' untranslated region of an mRNA and plays a role in translational regulation." [PMID:12890013, PMID:16153175, POMBASE:mah]	2929943	SOFA	SOFA	sequence	4	SO	region	uORF
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002027	"A short open reading frame that is found in the 5' untranslated region of an mRNA and plays a role in translational regulation." [PMID:12890013, PMID:16153175, POMBASE:mah]	4002968	SOFA	SOFA	sequence	5	SO	sequence_feature	uORF
SO:0002028	\N	\N	"An open reading frame that encodes a peptide of less than 100 amino acids." [PMID:23970561, PMID:24705786, POMBASE:mah]	SO:0002028	"An open reading frame that encodes a peptide of less than 100 amino acids." [PMID:23970561, PMID:24705786, POMBASE:mah]	46889	\N	\N	sequence	0	SO	sORF	sORF
SO:0000236	SO:0002028	\N	"The in-frame interval between the stop codons of a reading frame which when read as sequential triplets, has the potential of encoding a sequential string of amino acids. TER(NNN)nTER." [SGD:rb, SO:ma]	SO:0002028	"An open reading frame that encodes a peptide of less than 100 amino acids." [PMID:23970561, PMID:24705786, POMBASE:mah]	491692	\N	SOFA	sequence	1	SO	ORF	sORF
SO:0000717	SO:0000236	\N	"A nucleic acid sequence that when read as sequential triplets, has the potential of encoding a sequential string of amino acids. It need not contain the start or stop codon." [SGD:rb]	SO:0002028	"An open reading frame that encodes a peptide of less than 100 amino acids." [PMID:23970561, PMID:24705786, POMBASE:mah]	1074360	SOFA	SOFA	sequence	2	SO	reading_frame	sORF
SO:0001410	SO:0000717	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0002028	"An open reading frame that encodes a peptide of less than 100 amino acids." [PMID:23970561, PMID:24705786, POMBASE:mah]	1905520	SOFA	SOFA	sequence	3	SO	experimental_feature	sORF
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002028	"An open reading frame that encodes a peptide of less than 100 amino acids." [PMID:23970561, PMID:24705786, POMBASE:mah]	2929944	SOFA	SOFA	sequence	4	SO	region	sORF
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002028	"An open reading frame that encodes a peptide of less than 100 amino acids." [PMID:23970561, PMID:24705786, POMBASE:mah]	4002969	SOFA	SOFA	sequence	5	SO	sequence_feature	sORF
SO:0002029	\N	\N	"A translated ORF encoded entirely within the antisense strand of a known protein coding gene." [POMBASE:vw]	SO:0002029	"A translated ORF encoded entirely within the antisense strand of a known protein coding gene." [POMBASE:vw]	46890	\N	\N	sequence	0	SO	tnaORF	tnaORF
SO:0000236	SO:0002029	\N	"The in-frame interval between the stop codons of a reading frame which when read as sequential triplets, has the potential of encoding a sequential string of amino acids. TER(NNN)nTER." [SGD:rb, SO:ma]	SO:0002029	"A translated ORF encoded entirely within the antisense strand of a known protein coding gene." [POMBASE:vw]	491693	\N	SOFA	sequence	1	SO	ORF	tnaORF
SO:0000717	SO:0000236	\N	"A nucleic acid sequence that when read as sequential triplets, has the potential of encoding a sequential string of amino acids. It need not contain the start or stop codon." [SGD:rb]	SO:0002029	"A translated ORF encoded entirely within the antisense strand of a known protein coding gene." [POMBASE:vw]	1074361	SOFA	SOFA	sequence	2	SO	reading_frame	tnaORF
SO:0001410	SO:0000717	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0002029	"A translated ORF encoded entirely within the antisense strand of a known protein coding gene." [POMBASE:vw]	1905521	SOFA	SOFA	sequence	3	SO	experimental_feature	tnaORF
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002029	"A translated ORF encoded entirely within the antisense strand of a known protein coding gene." [POMBASE:vw]	2929945	SOFA	SOFA	sequence	4	SO	region	tnaORF
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002029	"A translated ORF encoded entirely within the antisense strand of a known protein coding gene." [POMBASE:vw]	4002970	SOFA	SOFA	sequence	5	SO	sequence_feature	tnaORF
SO:0002030	\N	\N	"One of two segments of homology found at all three mating loci (HML, MAT and HMR)." [SGD:jd]	SO:0002030	"One of two segments of homology found at all three mating loci (HML, MAT and HMR)." [SGD:jd]	46891	\N	\N	sequence	0	SO	X_region	X_region
SO:0001999	SO:0002030	\N	"DNA motif that is a component of a mating type region." [SO:ke]	SO:0002030	"One of two segments of homology found at all three mating loci (HML, MAT and HMR)." [SGD:jd]	491694	\N	\N	sequence	1	SO	mating_type_region_motif	X_region
SO:0000713	SO:0001999	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0002030	"One of two segments of homology found at all three mating loci (HML, MAT and HMR)." [SGD:jd]	1074362	\N	\N	sequence	2	SO	DNA_motif	X_region
SO:0001789	SO:0001999	\N	"A specialized region in the genomes of some yeast and fungi, the genes of which regulate mating type." [SO:ke]	SO:0002030	"One of two segments of homology found at all three mating loci (HML, MAT and HMR)." [SGD:jd]	1074363	\N	\N	sequence	2	SO	mating_type_region	X_region
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0002030	"One of two segments of homology found at all three mating loci (HML, MAT and HMR)." [SGD:jd]	1905522	\N	SOFA	sequence	3	SO	nucleotide_motif	X_region
SO:0005855	SO:0001789	\N	"A collection of related genes." [SO:ma]	SO:0002030	"One of two segments of homology found at all three mating loci (HML, MAT and HMR)." [SGD:jd]	1905523	\N	SOFA	sequence	3	SO	gene_group	X_region
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0002030	"One of two segments of homology found at all three mating loci (HML, MAT and HMR)." [SGD:jd]	2929946	SOFA	SOFA	sequence	4	SO	sequence_motif	X_region
SO:0001411	SO:0005855	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002030	"One of two segments of homology found at all three mating loci (HML, MAT and HMR)." [SGD:jd]	2929947	SOFA	SOFA	sequence	4	SO	biological_region	X_region
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002030	"One of two segments of homology found at all three mating loci (HML, MAT and HMR)." [SGD:jd]	4002971	SOFA	SOFA	sequence	5	SO	biological_region	X_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002030	"One of two segments of homology found at all three mating loci (HML, MAT and HMR)." [SGD:jd]	4967137	SOFA	SOFA	sequence	6	SO	region	X_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002030	"One of two segments of homology found at all three mating loci (HML, MAT and HMR)." [SGD:jd]	5407503	SOFA	SOFA	sequence	7	SO	sequence_feature	X_region
SO:0002031	\N	\N	"A short hairpin RNA (shRNA) is an RNA transcript that makes a tight hairpin turn that can be used to silence target gene expression via RNA interference." [PMID:6699500, SO:ke]	SO:0002031	"A short hairpin RNA (shRNA) is an RNA transcript that makes a tight hairpin turn that can be used to silence target gene expression via RNA interference." [PMID:6699500, SO:ke]	46892	\N	\N	sequence	0	SO	shRNA	shRNA
SO:0000655	SO:0002031	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0002031	"A short hairpin RNA (shRNA) is an RNA transcript that makes a tight hairpin turn that can be used to silence target gene expression via RNA interference." [PMID:6699500, SO:ke]	491695	\N	SOFA	sequence	1	SO	ncRNA	shRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0002031	"A short hairpin RNA (shRNA) is an RNA transcript that makes a tight hairpin turn that can be used to silence target gene expression via RNA interference." [PMID:6699500, SO:ke]	1074364	SOFA	SOFA	sequence	2	SO	mature_transcript	shRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002031	"A short hairpin RNA (shRNA) is an RNA transcript that makes a tight hairpin turn that can be used to silence target gene expression via RNA interference." [PMID:6699500, SO:ke]	1905524	SOFA	SOFA	sequence	3	SO	transcript	shRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002031	"A short hairpin RNA (shRNA) is an RNA transcript that makes a tight hairpin turn that can be used to silence target gene expression via RNA interference." [PMID:6699500, SO:ke]	2929948	SOFA	SOFA	sequence	4	SO	gene_member_region	shRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002031	"A short hairpin RNA (shRNA) is an RNA transcript that makes a tight hairpin turn that can be used to silence target gene expression via RNA interference." [PMID:6699500, SO:ke]	4002973	SOFA	SOFA	sequence	5	SO	biological_region	shRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002031	"A short hairpin RNA (shRNA) is an RNA transcript that makes a tight hairpin turn that can be used to silence target gene expression via RNA interference." [PMID:6699500, SO:ke]	4967139	SOFA	SOFA	sequence	6	SO	region	shRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002031	"A short hairpin RNA (shRNA) is an RNA transcript that makes a tight hairpin turn that can be used to silence target gene expression via RNA interference." [PMID:6699500, SO:ke]	5741644	SOFA	SOFA	sequence	7	SO	sequence_feature	shRNA
SO:0002032	\N	\N	"A non-coding transcript encoded by sequences adjacent to the ends of the 5' and 3' miR-encoding sequences that abut the loop in precursor miRNA." [SO:ke]	SO:0002032	"A non-coding transcript encoded by sequences adjacent to the ends of the 5' and 3' miR-encoding sequences that abut the loop in precursor miRNA." [SO:ke]	46893	\N	\N	sequence	0	SO	moR	moR
SO:0000370	SO:0002032	\N	"A non-coding RNA less than 200 nucleotides long, usually with a specific secondary structure, that acts to regulate gene expression. These include short ncRNAs such as piRNA, miRNA and siRNAs (among others)." [PMID:28541282, PomBase:al, SO:ma]	SO:0002032	"A non-coding transcript encoded by sequences adjacent to the ends of the 5' and 3' miR-encoding sequences that abut the loop in precursor miRNA." [SO:ke]	491696	\N	SOFA	sequence	1	SO	small_regulatory_ncRNA	moR
SO:0001244	SO:0002032	\N	"The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin structure." [SO:ke]	SO:0002032	"A non-coding transcript encoded by sequences adjacent to the ends of the 5' and 3' miR-encoding sequences that abut the loop in precursor miRNA." [SO:ke]	491697	\N	\N	sequence	1	SO	pre_miRNA	moR
SO:0000655	SO:0000370	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0002032	"A non-coding transcript encoded by sequences adjacent to the ends of the 5' and 3' miR-encoding sequences that abut the loop in precursor miRNA." [SO:ke]	1074365	SOFA	SOFA	sequence	2	SO	ncRNA	moR
SO:0001243	SO:0001244	\N	"A part of an miRNA primary_transcript." [SO:ke]	SO:0002032	"A non-coding transcript encoded by sequences adjacent to the ends of the 5' and 3' miR-encoding sequences that abut the loop in precursor miRNA." [SO:ke]	1074366	\N	\N	sequence	2	SO	miRNA_primary_transcript_region	moR
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0002032	"A non-coding transcript encoded by sequences adjacent to the ends of the 5' and 3' miR-encoding sequences that abut the loop in precursor miRNA." [SO:ke]	1905525	SOFA	SOFA	sequence	3	SO	mature_transcript	moR
SO:0000835	SO:0001243	\N	"A part of a primary transcript." [SO:ke]	SO:0002032	"A non-coding transcript encoded by sequences adjacent to the ends of the 5' and 3' miR-encoding sequences that abut the loop in precursor miRNA." [SO:ke]	1905526	\N	SOFA	sequence	3	SO	primary_transcript_region	moR
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002032	"A non-coding transcript encoded by sequences adjacent to the ends of the 5' and 3' miR-encoding sequences that abut the loop in precursor miRNA." [SO:ke]	2929949	SOFA	SOFA	sequence	4	SO	transcript	moR
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0002032	"A non-coding transcript encoded by sequences adjacent to the ends of the 5' and 3' miR-encoding sequences that abut the loop in precursor miRNA." [SO:ke]	2929950	SOFA	SOFA	sequence	4	SO	primary_transcript	moR
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0002032	"A non-coding transcript encoded by sequences adjacent to the ends of the 5' and 3' miR-encoding sequences that abut the loop in precursor miRNA." [SO:ke]	2929951	SOFA	SOFA	sequence	4	SO	transcript_region	moR
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002032	"A non-coding transcript encoded by sequences adjacent to the ends of the 5' and 3' miR-encoding sequences that abut the loop in precursor miRNA." [SO:ke]	4967141	SOFA	SOFA	sequence	6	SO	gene_member_region	moR
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002032	"A non-coding transcript encoded by sequences adjacent to the ends of the 5' and 3' miR-encoding sequences that abut the loop in precursor miRNA." [SO:ke]	4002975	SOFA	SOFA	sequence	5	SO	transcript	moR
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002032	"A non-coding transcript encoded by sequences adjacent to the ends of the 5' and 3' miR-encoding sequences that abut the loop in precursor miRNA." [SO:ke]	4002976	SOFA	SOFA	sequence	5	SO	transcript	moR
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002032	"A non-coding transcript encoded by sequences adjacent to the ends of the 5' and 3' miR-encoding sequences that abut the loop in precursor miRNA." [SO:ke]	4002977	SOFA	SOFA	sequence	5	SO	biological_region	moR
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002032	"A non-coding transcript encoded by sequences adjacent to the ends of the 5' and 3' miR-encoding sequences that abut the loop in precursor miRNA." [SO:ke]	5407504	SOFA	SOFA	sequence	7	SO	biological_region	moR
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002032	"A non-coding transcript encoded by sequences adjacent to the ends of the 5' and 3' miR-encoding sequences that abut the loop in precursor miRNA." [SO:ke]	6146687	SOFA	SOFA	sequence	8	SO	region	moR
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002032	"A non-coding transcript encoded by sequences adjacent to the ends of the 5' and 3' miR-encoding sequences that abut the loop in precursor miRNA." [SO:ke]	6550297	SOFA	SOFA	sequence	9	SO	sequence_feature	moR
SO:0002033	\N	\N	"A short, non coding transcript of loop-derived sequences encoded in precursor miRNA." [SO:ke]	SO:0002033	"A short, non coding transcript of loop-derived sequences encoded in precursor miRNA." [SO:ke]	46894	\N	\N	sequence	0	SO	loR	loR
SO:0000370	SO:0002033	\N	"A non-coding RNA less than 200 nucleotides long, usually with a specific secondary structure, that acts to regulate gene expression. These include short ncRNAs such as piRNA, miRNA and siRNAs (among others)." [PMID:28541282, PomBase:al, SO:ma]	SO:0002033	"A short, non coding transcript of loop-derived sequences encoded in precursor miRNA." [SO:ke]	491698	\N	SOFA	sequence	1	SO	small_regulatory_ncRNA	loR
SO:0001244	SO:0002033	\N	"The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin structure." [SO:ke]	SO:0002033	"A short, non coding transcript of loop-derived sequences encoded in precursor miRNA." [SO:ke]	491699	\N	\N	sequence	1	SO	pre_miRNA	loR
SO:0000655	SO:0000370	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0002033	"A short, non coding transcript of loop-derived sequences encoded in precursor miRNA." [SO:ke]	1074367	SOFA	SOFA	sequence	2	SO	ncRNA	loR
SO:0001243	SO:0001244	\N	"A part of an miRNA primary_transcript." [SO:ke]	SO:0002033	"A short, non coding transcript of loop-derived sequences encoded in precursor miRNA." [SO:ke]	1074368	\N	\N	sequence	2	SO	miRNA_primary_transcript_region	loR
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0002033	"A short, non coding transcript of loop-derived sequences encoded in precursor miRNA." [SO:ke]	1905527	SOFA	SOFA	sequence	3	SO	mature_transcript	loR
SO:0000835	SO:0001243	\N	"A part of a primary transcript." [SO:ke]	SO:0002033	"A short, non coding transcript of loop-derived sequences encoded in precursor miRNA." [SO:ke]	1905528	\N	SOFA	sequence	3	SO	primary_transcript_region	loR
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002033	"A short, non coding transcript of loop-derived sequences encoded in precursor miRNA." [SO:ke]	2929952	SOFA	SOFA	sequence	4	SO	transcript	loR
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0002033	"A short, non coding transcript of loop-derived sequences encoded in precursor miRNA." [SO:ke]	2929953	SOFA	SOFA	sequence	4	SO	primary_transcript	loR
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0002033	"A short, non coding transcript of loop-derived sequences encoded in precursor miRNA." [SO:ke]	2929954	SOFA	SOFA	sequence	4	SO	transcript_region	loR
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002033	"A short, non coding transcript of loop-derived sequences encoded in precursor miRNA." [SO:ke]	4967144	SOFA	SOFA	sequence	6	SO	gene_member_region	loR
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002033	"A short, non coding transcript of loop-derived sequences encoded in precursor miRNA." [SO:ke]	4002979	SOFA	SOFA	sequence	5	SO	transcript	loR
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002033	"A short, non coding transcript of loop-derived sequences encoded in precursor miRNA." [SO:ke]	4002980	SOFA	SOFA	sequence	5	SO	transcript	loR
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002033	"A short, non coding transcript of loop-derived sequences encoded in precursor miRNA." [SO:ke]	4002981	SOFA	SOFA	sequence	5	SO	biological_region	loR
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002033	"A short, non coding transcript of loop-derived sequences encoded in precursor miRNA." [SO:ke]	5407505	SOFA	SOFA	sequence	7	SO	biological_region	loR
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002033	"A short, non coding transcript of loop-derived sequences encoded in precursor miRNA." [SO:ke]	6146689	SOFA	SOFA	sequence	8	SO	region	loR
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002033	"A short, non coding transcript of loop-derived sequences encoded in precursor miRNA." [SO:ke]	6550298	SOFA	SOFA	sequence	9	SO	sequence_feature	loR
SO:0002034	\N	\N	"A snoRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	SO:0002034	"A snoRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	46895	\N	\N	sequence	0	SO	miR_encoding_snoRNA_primary_transcript	miR_encoding_snoRNA_primary_transcript
SO:0000232	SO:0002034	\N	"A primary transcript encoding a small nucleolar mRNA (SO:0000275)." [SO:ke]	SO:0002034	"A snoRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	491700	\N	\N	sequence	1	SO	snoRNA_primary_transcript	miR_encoding_snoRNA_primary_transcript
SO:0000483	SO:0000232	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0002034	"A snoRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	1074369	\N	SOFA	sequence	2	SO	nc_primary_transcript	miR_encoding_snoRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0002034	"A snoRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	1905529	SOFA	SOFA	sequence	3	SO	primary_transcript	miR_encoding_snoRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002034	"A snoRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	2929955	SOFA	SOFA	sequence	4	SO	transcript	miR_encoding_snoRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002034	"A snoRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	4002982	SOFA	SOFA	sequence	5	SO	gene_member_region	miR_encoding_snoRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002034	"A snoRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	4967146	SOFA	SOFA	sequence	6	SO	biological_region	miR_encoding_snoRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002034	"A snoRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	5741649	SOFA	SOFA	sequence	7	SO	region	miR_encoding_snoRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002034	"A snoRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	6311315	SOFA	SOFA	sequence	8	SO	sequence_feature	miR_encoding_snoRNA_primary_transcript
SO:0002035	\N	\N	"A primary transcript encoding a  lncRNA." [SO:ke]	SO:0002035	"A primary transcript encoding a  lncRNA." [SO:ke]	46896	\N	\N	sequence	0	SO	lncRNA_primary_transcript	lncRNA_primary_transcript
SO:0000483	SO:0002035	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0002035	"A primary transcript encoding a  lncRNA." [SO:ke]	491701	\N	SOFA	sequence	1	SO	nc_primary_transcript	lncRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0002035	"A primary transcript encoding a  lncRNA." [SO:ke]	1074370	SOFA	SOFA	sequence	2	SO	primary_transcript	lncRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002035	"A primary transcript encoding a  lncRNA." [SO:ke]	1905530	SOFA	SOFA	sequence	3	SO	transcript	lncRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002035	"A primary transcript encoding a  lncRNA." [SO:ke]	2929956	SOFA	SOFA	sequence	4	SO	gene_member_region	lncRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002035	"A primary transcript encoding a  lncRNA." [SO:ke]	4002983	SOFA	SOFA	sequence	5	SO	biological_region	lncRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002035	"A primary transcript encoding a  lncRNA." [SO:ke]	4967147	SOFA	SOFA	sequence	6	SO	region	lncRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002035	"A primary transcript encoding a  lncRNA." [SO:ke]	5741650	SOFA	SOFA	sequence	7	SO	sequence_feature	lncRNA_primary_transcript
SO:0002036	\N	\N	"A lncRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	SO:0002036	"A lncRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	46897	\N	\N	sequence	0	SO	miR_encoding_lncRNA_primary_transcript	miR_encoding_lncRNA_primary_transcript
SO:0002035	SO:0002036	\N	"A primary transcript encoding a  lncRNA." [SO:ke]	SO:0002036	"A lncRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	491702	\N	\N	sequence	1	SO	lncRNA_primary_transcript	miR_encoding_lncRNA_primary_transcript
SO:0000483	SO:0002035	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0002036	"A lncRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	1074371	\N	SOFA	sequence	2	SO	nc_primary_transcript	miR_encoding_lncRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0002036	"A lncRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	1905531	SOFA	SOFA	sequence	3	SO	primary_transcript	miR_encoding_lncRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002036	"A lncRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	2929957	SOFA	SOFA	sequence	4	SO	transcript	miR_encoding_lncRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002036	"A lncRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	4002984	SOFA	SOFA	sequence	5	SO	gene_member_region	miR_encoding_lncRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002036	"A lncRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	4967148	SOFA	SOFA	sequence	6	SO	biological_region	miR_encoding_lncRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002036	"A lncRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	5741651	SOFA	SOFA	sequence	7	SO	region	miR_encoding_lncRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002036	"A lncRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	6311316	SOFA	SOFA	sequence	8	SO	sequence_feature	miR_encoding_lncRNA_primary_transcript
SO:0002037	\N	\N	"A tRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	SO:0002037	"A tRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	46898	\N	\N	sequence	0	SO	miR_encoding_tRNA_primary_transcript	miR_encoding_tRNA_primary_transcript
SO:0000210	SO:0002037	\N	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	SO:0002037	"A tRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	491703	\N	\N	sequence	1	SO	tRNA_primary_transcript	miR_encoding_tRNA_primary_transcript
SO:0000483	SO:0000210	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0002037	"A tRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	1074372	\N	SOFA	sequence	2	SO	nc_primary_transcript	miR_encoding_tRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0002037	"A tRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	1905532	SOFA	SOFA	sequence	3	SO	primary_transcript	miR_encoding_tRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002037	"A tRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	2929958	SOFA	SOFA	sequence	4	SO	transcript	miR_encoding_tRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002037	"A tRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	4002985	SOFA	SOFA	sequence	5	SO	gene_member_region	miR_encoding_tRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002037	"A tRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	4967149	SOFA	SOFA	sequence	6	SO	biological_region	miR_encoding_tRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002037	"A tRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	5741652	SOFA	SOFA	sequence	7	SO	region	miR_encoding_tRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002037	"A tRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	6311317	SOFA	SOFA	sequence	8	SO	sequence_feature	miR_encoding_tRNA_primary_transcript
SO:0002038	\N	\N	"A primary transcript encoding an shRNA." [SO:ke]	SO:0002038	"A primary transcript encoding an shRNA." [SO:ke]	46899	\N	\N	sequence	0	SO	shRNA_primary_transcript	shRNA_primary_transcript
SO:0000483	SO:0002038	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0002038	"A primary transcript encoding an shRNA." [SO:ke]	491704	\N	SOFA	sequence	1	SO	nc_primary_transcript	shRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0002038	"A primary transcript encoding an shRNA." [SO:ke]	1074373	SOFA	SOFA	sequence	2	SO	primary_transcript	shRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002038	"A primary transcript encoding an shRNA." [SO:ke]	1905533	SOFA	SOFA	sequence	3	SO	transcript	shRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002038	"A primary transcript encoding an shRNA." [SO:ke]	2929959	SOFA	SOFA	sequence	4	SO	gene_member_region	shRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002038	"A primary transcript encoding an shRNA." [SO:ke]	4002986	SOFA	SOFA	sequence	5	SO	biological_region	shRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002038	"A primary transcript encoding an shRNA." [SO:ke]	4967150	SOFA	SOFA	sequence	6	SO	region	shRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002038	"A primary transcript encoding an shRNA." [SO:ke]	5741653	SOFA	SOFA	sequence	7	SO	sequence_feature	shRNA_primary_transcript
SO:0002039	\N	\N	"A shRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	SO:0002039	"A shRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	46900	\N	\N	sequence	0	SO	miR_encoding_shRNA_primary_transcript	miR_encoding_shRNA_primary_transcript
SO:0002038	SO:0002039	\N	"A primary transcript encoding an shRNA." [SO:ke]	SO:0002039	"A shRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	491705	\N	\N	sequence	1	SO	shRNA_primary_transcript	miR_encoding_shRNA_primary_transcript
SO:0000483	SO:0002038	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0002039	"A shRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	1074374	\N	SOFA	sequence	2	SO	nc_primary_transcript	miR_encoding_shRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0002039	"A shRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	1905534	SOFA	SOFA	sequence	3	SO	primary_transcript	miR_encoding_shRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002039	"A shRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	2929960	SOFA	SOFA	sequence	4	SO	transcript	miR_encoding_shRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002039	"A shRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	4002987	SOFA	SOFA	sequence	5	SO	gene_member_region	miR_encoding_shRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002039	"A shRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	4967151	SOFA	SOFA	sequence	6	SO	biological_region	miR_encoding_shRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002039	"A shRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	5741654	SOFA	SOFA	sequence	7	SO	region	miR_encoding_shRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002039	"A shRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	6311318	SOFA	SOFA	sequence	8	SO	sequence_feature	miR_encoding_shRNA_primary_transcript
SO:0002040	\N	\N	"A primary transcript encoding a  vaultRNA." [SO:ke]	SO:0002040	"A primary transcript encoding a  vaultRNA." [SO:ke]	46901	\N	\N	sequence	0	SO	vaultRNA_primary_transcript	vaultRNA_primary_transcript
SO:0000483	SO:0002040	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0002040	"A primary transcript encoding a  vaultRNA." [SO:ke]	491706	\N	SOFA	sequence	1	SO	nc_primary_transcript	vaultRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0002040	"A primary transcript encoding a  vaultRNA." [SO:ke]	1074375	SOFA	SOFA	sequence	2	SO	primary_transcript	vaultRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002040	"A primary transcript encoding a  vaultRNA." [SO:ke]	1905535	SOFA	SOFA	sequence	3	SO	transcript	vaultRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002040	"A primary transcript encoding a  vaultRNA." [SO:ke]	2929961	SOFA	SOFA	sequence	4	SO	gene_member_region	vaultRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002040	"A primary transcript encoding a  vaultRNA." [SO:ke]	4002988	SOFA	SOFA	sequence	5	SO	biological_region	vaultRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002040	"A primary transcript encoding a  vaultRNA." [SO:ke]	4967152	SOFA	SOFA	sequence	6	SO	region	vaultRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002040	"A primary transcript encoding a  vaultRNA." [SO:ke]	5741655	SOFA	SOFA	sequence	7	SO	sequence_feature	vaultRNA_primary_transcript
SO:0002041	\N	\N	"A vaultRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	SO:0002041	"A vaultRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	46902	\N	\N	sequence	0	SO	miR_encoding_vaultRNA_primary_transcript	miR_encoding_vaultRNA_primary_transcript
SO:0002040	SO:0002041	\N	"A primary transcript encoding a  vaultRNA." [SO:ke]	SO:0002041	"A vaultRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	491707	\N	\N	sequence	1	SO	vaultRNA_primary_transcript	miR_encoding_vaultRNA_primary_transcript
SO:0000483	SO:0002040	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0002041	"A vaultRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	1074376	\N	SOFA	sequence	2	SO	nc_primary_transcript	miR_encoding_vaultRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0002041	"A vaultRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	1905536	SOFA	SOFA	sequence	3	SO	primary_transcript	miR_encoding_vaultRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002041	"A vaultRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	2929962	SOFA	SOFA	sequence	4	SO	transcript	miR_encoding_vaultRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002041	"A vaultRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	4002989	SOFA	SOFA	sequence	5	SO	gene_member_region	miR_encoding_vaultRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002041	"A vaultRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	4967153	SOFA	SOFA	sequence	6	SO	biological_region	miR_encoding_vaultRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002041	"A vaultRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	5741656	SOFA	SOFA	sequence	7	SO	region	miR_encoding_vaultRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002041	"A vaultRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	6311319	SOFA	SOFA	sequence	8	SO	sequence_feature	miR_encoding_vaultRNA_primary_transcript
SO:0002042	\N	\N	"A primary transcript encoding a  Y-RNA." [SO:ke]	SO:0002042	"A primary transcript encoding a  Y-RNA." [SO:ke]	46903	\N	\N	sequence	0	SO	Y_RNA_primary_transcript	Y_RNA_primary_transcript
SO:0000483	SO:0002042	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0002042	"A primary transcript encoding a  Y-RNA." [SO:ke]	491708	\N	SOFA	sequence	1	SO	nc_primary_transcript	Y_RNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0002042	"A primary transcript encoding a  Y-RNA." [SO:ke]	1074377	SOFA	SOFA	sequence	2	SO	primary_transcript	Y_RNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002042	"A primary transcript encoding a  Y-RNA." [SO:ke]	1905537	SOFA	SOFA	sequence	3	SO	transcript	Y_RNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002042	"A primary transcript encoding a  Y-RNA." [SO:ke]	2929963	SOFA	SOFA	sequence	4	SO	gene_member_region	Y_RNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002042	"A primary transcript encoding a  Y-RNA." [SO:ke]	4002990	SOFA	SOFA	sequence	5	SO	biological_region	Y_RNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002042	"A primary transcript encoding a  Y-RNA." [SO:ke]	4967154	SOFA	SOFA	sequence	6	SO	region	Y_RNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002042	"A primary transcript encoding a  Y-RNA." [SO:ke]	5741657	SOFA	SOFA	sequence	7	SO	sequence_feature	Y_RNA_primary_transcript
SO:0002043	\N	\N	"A Y-RNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	SO:0002043	"A Y-RNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	46904	\N	\N	sequence	0	SO	miR_encoding_Y_RNA_primary_transcript	miR_encoding_Y_RNA_primary_transcript
SO:0002042	SO:0002043	\N	"A primary transcript encoding a  Y-RNA." [SO:ke]	SO:0002043	"A Y-RNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	491709	\N	\N	sequence	1	SO	Y_RNA_primary_transcript	miR_encoding_Y_RNA_primary_transcript
SO:0000483	SO:0002042	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0002043	"A Y-RNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	1074378	\N	SOFA	sequence	2	SO	nc_primary_transcript	miR_encoding_Y_RNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0002043	"A Y-RNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	1905538	SOFA	SOFA	sequence	3	SO	primary_transcript	miR_encoding_Y_RNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002043	"A Y-RNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	2929964	SOFA	SOFA	sequence	4	SO	transcript	miR_encoding_Y_RNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002043	"A Y-RNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	4002991	SOFA	SOFA	sequence	5	SO	gene_member_region	miR_encoding_Y_RNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002043	"A Y-RNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	4967155	SOFA	SOFA	sequence	6	SO	biological_region	miR_encoding_Y_RNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002043	"A Y-RNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	5741658	SOFA	SOFA	sequence	7	SO	region	miR_encoding_Y_RNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002043	"A Y-RNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA." [SO:ke]	6311320	SOFA	SOFA	sequence	8	SO	sequence_feature	miR_encoding_Y_RNA_primary_transcript
SO:0002044	\N	\N	"A TCS element is a (yeast) transcription factor binding site, bound by the TEA DNA binding domain (DBD) of transcription factors. The consensus site is CATTCC or CATTCT." [PMID:1489142, PMID:20118212, SO:ke]	SO:0002044	"A TCS element is a (yeast) transcription factor binding site, bound by the TEA DNA binding domain (DBD) of transcription factors. The consensus site is CATTCC or CATTCT." [PMID:1489142, PMID:20118212, SO:ke]	46905	\N	\N	sequence	0	SO	TCS_element	TCS_element
SO:0001659	SO:0002044	\N	"" []	SO:0002044	"A TCS element is a (yeast) transcription factor binding site, bound by the TEA DNA binding domain (DBD) of transcription factors. The consensus site is CATTCC or CATTCT." [PMID:1489142, PMID:20118212, SO:ke]	491710	\N	\N	sequence	1	SO	promoter_element	TCS_element
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0002044	"A TCS element is a (yeast) transcription factor binding site, bound by the TEA DNA binding domain (DBD) of transcription factors. The consensus site is CATTCC or CATTCT." [PMID:1489142, PMID:20118212, SO:ke]	1074379	\N	\N	sequence	2	SO	DNA_motif	TCS_element
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0002044	"A TCS element is a (yeast) transcription factor binding site, bound by the TEA DNA binding domain (DBD) of transcription factors. The consensus site is CATTCC or CATTCT." [PMID:1489142, PMID:20118212, SO:ke]	1905539	\N	SOFA	sequence	3	SO	nucleotide_motif	TCS_element
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0002044	"A TCS element is a (yeast) transcription factor binding site, bound by the TEA DNA binding domain (DBD) of transcription factors. The consensus site is CATTCC or CATTCT." [PMID:1489142, PMID:20118212, SO:ke]	2929965	SOFA	SOFA	sequence	4	SO	sequence_motif	TCS_element
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002044	"A TCS element is a (yeast) transcription factor binding site, bound by the TEA DNA binding domain (DBD) of transcription factors. The consensus site is CATTCC or CATTCT." [PMID:1489142, PMID:20118212, SO:ke]	4002992	SOFA	SOFA	sequence	5	SO	biological_region	TCS_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002044	"A TCS element is a (yeast) transcription factor binding site, bound by the TEA DNA binding domain (DBD) of transcription factors. The consensus site is CATTCC or CATTCT." [PMID:1489142, PMID:20118212, SO:ke]	4967156	SOFA	SOFA	sequence	6	SO	region	TCS_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002044	"A TCS element is a (yeast) transcription factor binding site, bound by the TEA DNA binding domain (DBD) of transcription factors. The consensus site is CATTCC or CATTCT." [PMID:1489142, PMID:20118212, SO:ke]	5741659	SOFA	SOFA	sequence	7	SO	sequence_feature	TCS_element
SO:0002045	\N	\N	"A PRE is a (yeast) TFBS with consensus site [TGAAAC(A/G)]." [PMID:1489142, SO:ke]	SO:0002045	"A PRE is a (yeast) TFBS with consensus site [TGAAAC(A/G)]." [PMID:1489142, SO:ke]	46906	\N	\N	sequence	0	SO	pheromone_response_element	pheromone_response_element
SO:0000235	SO:0002045	\N	"A region of a nucleotide molecule that binds a Transcription Factor or Transcription Factor complex [GO:0005667]." [SO:ke]	SO:0002045	"A PRE is a (yeast) TFBS with consensus site [TGAAAC(A/G)]." [PMID:1489142, SO:ke]	491711	\N	SOFA	sequence	1	SO	TF_binding_site	pheromone_response_element
SO:0001659	SO:0002045	\N	"" []	SO:0002045	"A PRE is a (yeast) TFBS with consensus site [TGAAAC(A/G)]." [PMID:1489142, SO:ke]	491712	\N	\N	sequence	1	SO	promoter_element	pheromone_response_element
SO:0001654	SO:0000235	\N	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	SO:0002045	"A PRE is a (yeast) TFBS with consensus site [TGAAAC(A/G)]." [PMID:1489142, SO:ke]	1074380	SOFA	SOFA	sequence	2	SO	nucleotide_to_protein_binding_site	pheromone_response_element
SO:0001679	SO:0000235	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0002045	"A PRE is a (yeast) TFBS with consensus site [TGAAAC(A/G)]." [PMID:1489142, SO:ke]	1074381	SOFA	SOFA	sequence	2	SO	transcription_regulatory_region	pheromone_response_element
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0002045	"A PRE is a (yeast) TFBS with consensus site [TGAAAC(A/G)]." [PMID:1489142, SO:ke]	1074382	\N	\N	sequence	2	SO	DNA_motif	pheromone_response_element
SO:0000410	SO:0001654	\N	"A binding site that, in the molecule, interacts selectively and non-covalently with polypeptide molecules." [SO:ke]	SO:0002045	"A PRE is a (yeast) TFBS with consensus site [TGAAAC(A/G)]." [PMID:1489142, SO:ke]	1905540	SOFA	SOFA	sequence	3	SO	protein_binding_site	pheromone_response_element
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0002045	"A PRE is a (yeast) TFBS with consensus site [TGAAAC(A/G)]." [PMID:1489142, SO:ke]	1905541	SOFA	SOFA	sequence	3	SO	regulatory_region	pheromone_response_element
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0002045	"A PRE is a (yeast) TFBS with consensus site [TGAAAC(A/G)]." [PMID:1489142, SO:ke]	1905542	\N	SOFA	sequence	3	SO	nucleotide_motif	pheromone_response_element
SO:0000409	SO:0000410	\N	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0002045	"A PRE is a (yeast) TFBS with consensus site [TGAAAC(A/G)]." [PMID:1489142, SO:ke]	2929966	SOFA	biosapiens,SOFA	sequence	4	SO	binding_site	pheromone_response_element
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0002045	"A PRE is a (yeast) TFBS with consensus site [TGAAAC(A/G)]." [PMID:1489142, SO:ke]	2929967	SOFA	SOFA	sequence	4	SO	gene_member_region	pheromone_response_element
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0002045	"A PRE is a (yeast) TFBS with consensus site [TGAAAC(A/G)]." [PMID:1489142, SO:ke]	2929968	SOFA	SOFA	sequence	4	SO	sequence_motif	pheromone_response_element
SO:0001411	SO:0000409	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002045	"A PRE is a (yeast) TFBS with consensus site [TGAAAC(A/G)]." [PMID:1489142, SO:ke]	4002993	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	pheromone_response_element
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002045	"A PRE is a (yeast) TFBS with consensus site [TGAAAC(A/G)]." [PMID:1489142, SO:ke]	4002994	SOFA	SOFA	sequence	5	SO	biological_region	pheromone_response_element
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002045	"A PRE is a (yeast) TFBS with consensus site [TGAAAC(A/G)]." [PMID:1489142, SO:ke]	4002995	SOFA	SOFA	sequence	5	SO	biological_region	pheromone_response_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002045	"A PRE is a (yeast) TFBS with consensus site [TGAAAC(A/G)]." [PMID:1489142, SO:ke]	4967157	SOFA	SOFA	sequence	6	SO	region	pheromone_response_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002045	"A PRE is a (yeast) TFBS with consensus site [TGAAAC(A/G)]." [PMID:1489142, SO:ke]	5741660	SOFA	SOFA	sequence	7	SO	sequence_feature	pheromone_response_element
SO:0002046	\N	\N	"A FRE is an enhancer element necessary and sufficient to confer filamentation associated expression in S. cerevisiae." [PMID:1489142, SO:ke]	SO:0002046	"A FRE is an enhancer element necessary and sufficient to confer filamentation associated expression in S. cerevisiae." [PMID:1489142, SO:ke]	46907	\N	\N	sequence	0	SO	FRE	FRE
SO:0001461	SO:0002046	\N	"A binding site that, in the enhancer region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	SO:0002046	"A FRE is an enhancer element necessary and sufficient to confer filamentation associated expression in S. cerevisiae." [PMID:1489142, SO:ke]	491713	\N	\N	sequence	1	SO	enhancer_binding_site	FRE
SO:0000165	SO:0001461	\N	"A cis-acting sequence that increases the utilization of (some) eukaryotic promoters, and can function in either orientation and in any location (upstream or downstream) relative to the promoter." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0002046	"A FRE is an enhancer element necessary and sufficient to confer filamentation associated expression in S. cerevisiae." [PMID:1489142, SO:ke]	1074383	\N	SOFA	sequence	2	SO	enhancer	FRE
SO:0001654	SO:0001461	\N	"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues." [SO:ke]	SO:0002046	"A FRE is an enhancer element necessary and sufficient to confer filamentation associated expression in S. cerevisiae." [PMID:1489142, SO:ke]	1074384	\N	SOFA	sequence	2	SO	nucleotide_to_protein_binding_site	FRE
SO:0000727	SO:0000165	\N	"A regulatory region where transcription factor binding sites clustered to regulate various aspects of transcription activities. (CRMs can be located a few kb to hundred kb upstream of the basal promoter, in the coding sequence, within introns, or in the downstream 3'UTR sequences, as well as on different chromosome). A single gene can be regulated by multiple CRMs to give precise control of its spatial and temporal expression. CRMs function as nodes in large, intertwined regulatory network." [PMID:19660565, SO:SG]	SO:0002046	"A FRE is an enhancer element necessary and sufficient to confer filamentation associated expression in S. cerevisiae." [PMID:1489142, SO:ke]	1905543	SOFA	SOFA	sequence	3	SO	CRM	FRE
SO:0000410	SO:0001654	\N	"A binding site that, in the molecule, interacts selectively and non-covalently with polypeptide molecules." [SO:ke]	SO:0002046	"A FRE is an enhancer element necessary and sufficient to confer filamentation associated expression in S. cerevisiae." [PMID:1489142, SO:ke]	1905544	SOFA	SOFA	sequence	3	SO	protein_binding_site	FRE
SO:0001055	SO:0000727	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0002046	"A FRE is an enhancer element necessary and sufficient to confer filamentation associated expression in S. cerevisiae." [PMID:1489142, SO:ke]	2929969	SOFA	SOFA	sequence	4	SO	transcriptional_cis_regulatory_region	FRE
SO:0000409	SO:0000410	\N	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0002046	"A FRE is an enhancer element necessary and sufficient to confer filamentation associated expression in S. cerevisiae." [PMID:1489142, SO:ke]	2929970	SOFA	biosapiens,SOFA	sequence	4	SO	binding_site	FRE
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0002046	"A FRE is an enhancer element necessary and sufficient to confer filamentation associated expression in S. cerevisiae." [PMID:1489142, SO:ke]	4002996	SOFA	SOFA	sequence	5	SO	transcription_regulatory_region	FRE
SO:0001411	SO:0000409	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002046	"A FRE is an enhancer element necessary and sufficient to confer filamentation associated expression in S. cerevisiae." [PMID:1489142, SO:ke]	4002997	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	FRE
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0002046	"A FRE is an enhancer element necessary and sufficient to confer filamentation associated expression in S. cerevisiae." [PMID:1489142, SO:ke]	4967158	SOFA	SOFA	sequence	6	SO	regulatory_region	FRE
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002046	"A FRE is an enhancer element necessary and sufficient to confer filamentation associated expression in S. cerevisiae." [PMID:1489142, SO:ke]	6699542	SOFA	SOFA	sequence	9	SO	region	FRE
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0002046	"A FRE is an enhancer element necessary and sufficient to confer filamentation associated expression in S. cerevisiae." [PMID:1489142, SO:ke]	5741661	SOFA	SOFA	sequence	7	SO	gene_member_region	FRE
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002046	"A FRE is an enhancer element necessary and sufficient to confer filamentation associated expression in S. cerevisiae." [PMID:1489142, SO:ke]	6848188	SOFA	SOFA	sequence	10	SO	sequence_feature	FRE
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002046	"A FRE is an enhancer element necessary and sufficient to confer filamentation associated expression in S. cerevisiae." [PMID:1489142, SO:ke]	6311321	SOFA	SOFA	sequence	8	SO	biological_region	FRE
SO:0002047	\N	\N	"Transcription pause sites are regions of a gene where RNA polymerase may pause during transcription. The functional role of pausing may be to facilitate factor recruitment, RNA folding, and synchronization with translation. Consensus transcription pause site have been observed in E. coli." [PMID:24789973, SO:ke]	SO:0002047	"Transcription pause sites are regions of a gene where RNA polymerase may pause during transcription. The functional role of pausing may be to facilitate factor recruitment, RNA folding, and synchronization with translation. Consensus transcription pause site have been observed in E. coli." [PMID:24789973, SO:ke]	46908	\N	\N	sequence	0	SO	transcription_pause_site	transcription_pause_site
SO:0001679	SO:0002047	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0002047	"Transcription pause sites are regions of a gene where RNA polymerase may pause during transcription. The functional role of pausing may be to facilitate factor recruitment, RNA folding, and synchronization with translation. Consensus transcription pause site have been observed in E. coli." [PMID:24789973, SO:ke]	491714	\N	SOFA	sequence	1	SO	transcription_regulatory_region	transcription_pause_site
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0002047	"Transcription pause sites are regions of a gene where RNA polymerase may pause during transcription. The functional role of pausing may be to facilitate factor recruitment, RNA folding, and synchronization with translation. Consensus transcription pause site have been observed in E. coli." [PMID:24789973, SO:ke]	1074385	SOFA	SOFA	sequence	2	SO	regulatory_region	transcription_pause_site
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0002047	"Transcription pause sites are regions of a gene where RNA polymerase may pause during transcription. The functional role of pausing may be to facilitate factor recruitment, RNA folding, and synchronization with translation. Consensus transcription pause site have been observed in E. coli." [PMID:24789973, SO:ke]	1905545	SOFA	SOFA	sequence	3	SO	gene_member_region	transcription_pause_site
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002047	"Transcription pause sites are regions of a gene where RNA polymerase may pause during transcription. The functional role of pausing may be to facilitate factor recruitment, RNA folding, and synchronization with translation. Consensus transcription pause site have been observed in E. coli." [PMID:24789973, SO:ke]	2929971	SOFA	SOFA	sequence	4	SO	biological_region	transcription_pause_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002047	"Transcription pause sites are regions of a gene where RNA polymerase may pause during transcription. The functional role of pausing may be to facilitate factor recruitment, RNA folding, and synchronization with translation. Consensus transcription pause site have been observed in E. coli." [PMID:24789973, SO:ke]	4002998	SOFA	SOFA	sequence	5	SO	region	transcription_pause_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002047	"Transcription pause sites are regions of a gene where RNA polymerase may pause during transcription. The functional role of pausing may be to facilitate factor recruitment, RNA folding, and synchronization with translation. Consensus transcription pause site have been observed in E. coli." [PMID:24789973, SO:ke]	4967160	SOFA	SOFA	sequence	6	SO	sequence_feature	transcription_pause_site
SO:0002048	\N	\N	"A reading frame that could encode a full-length protein but which contains obvious mid-sequence disablements (frameshifts or premature stop codons)." [SGD:se]	SO:0002048	"A reading frame that could encode a full-length protein but which contains obvious mid-sequence disablements (frameshifts or premature stop codons)." [SGD:se]	46909	\N	\N	sequence	0	SO	disabled_reading_frame	disabled_reading_frame
SO:0000717	SO:0002048	\N	"A nucleic acid sequence that when read as sequential triplets, has the potential of encoding a sequential string of amino acids. It need not contain the start or stop codon." [SGD:rb]	SO:0002048	"A reading frame that could encode a full-length protein but which contains obvious mid-sequence disablements (frameshifts or premature stop codons)." [SGD:se]	491715	\N	SOFA	sequence	1	SO	reading_frame	disabled_reading_frame
SO:0001410	SO:0000717	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0002048	"A reading frame that could encode a full-length protein but which contains obvious mid-sequence disablements (frameshifts or premature stop codons)." [SGD:se]	1074386	SOFA	SOFA	sequence	2	SO	experimental_feature	disabled_reading_frame
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002048	"A reading frame that could encode a full-length protein but which contains obvious mid-sequence disablements (frameshifts or premature stop codons)." [SGD:se]	1905546	SOFA	SOFA	sequence	3	SO	region	disabled_reading_frame
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002048	"A reading frame that could encode a full-length protein but which contains obvious mid-sequence disablements (frameshifts or premature stop codons)." [SGD:se]	2929972	SOFA	SOFA	sequence	4	SO	sequence_feature	disabled_reading_frame
SO:0002049	\N	\N	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:rs]	SO:0002049	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:rs]	46910	\N	\N	sequence	0	SO	H3K27_acetylation_site	H3K27_acetylation_site
SO:0001973	SO:0002049	\N	"A histone 3 modification where the modification is the acetylation of the residue." [EBI:nj, ISBN:0815341059, SO:ke]	SO:0002049	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:rs]	491716	\N	\N	sequence	1	SO	histone_3_acetylation_site	H3K27_acetylation_site
SO:0001702	SO:0001973	\N	"A histone modification where the modification is the acylation of the residue." [SO:ke]	SO:0002049	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:rs]	1074387	\N	\N	sequence	2	SO	histone_acetylation_site	H3K27_acetylation_site
SO:0001700	SO:0001702	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0002049	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:rs]	1905547	\N	\N	sequence	3	SO	histone_modification	H3K27_acetylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0002049	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:rs]	2929973	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H3K27_acetylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0002049	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:rs]	2929974	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H3K27_acetylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0002049	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:rs]	4002999	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H3K27_acetylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002049	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:rs]	4003000	SOFA	SOFA	sequence	5	SO	biological_region	H3K27_acetylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0002049	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:rs]	4967161	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H3K27_acetylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002049	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:rs]	7105162	SOFA	SOFA	sequence	11	SO	region	H3K27_acetylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0002049	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:rs]	5741663	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H3K27_acetylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002049	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:rs]	7181737	SOFA	SOFA	sequence	12	SO	sequence_feature	H3K27_acetylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0002049	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:rs]	6311322	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H3K27_acetylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0002049	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:rs]	6699543	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H3K27_acetylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002049	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:rs]	6699544	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H3K27_acetylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002049	"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is acetylated." [SO:rs]	6948204	SOFA	SOFA	sequence	10	SO	biological_region	H3K27_acetylation_site
SO:0002050	\N	\N	"A promoter that allows for continual transcription of gene." [SO:ke]	SO:0002050	"A promoter that allows for continual transcription of gene." [SO:ke]	46911	\N	\N	sequence	0	SO	constitutive_promoter	constitutive_promoter
SO:0000167	SO:0002050	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0002050	"A promoter that allows for continual transcription of gene." [SO:ke]	491717	\N	SOFA	sequence	1	SO	promoter	constitutive_promoter
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0002050	"A promoter that allows for continual transcription of gene." [SO:ke]	1074388	SOFA	SOFA	sequence	2	SO	transcriptional_cis_regulatory_region	constitutive_promoter
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0002050	"A promoter that allows for continual transcription of gene." [SO:ke]	1905548	SOFA	SOFA	sequence	3	SO	transcription_regulatory_region	constitutive_promoter
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0002050	"A promoter that allows for continual transcription of gene." [SO:ke]	2929975	SOFA	SOFA	sequence	4	SO	regulatory_region	constitutive_promoter
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0002050	"A promoter that allows for continual transcription of gene." [SO:ke]	4003001	SOFA	SOFA	sequence	5	SO	gene_member_region	constitutive_promoter
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002050	"A promoter that allows for continual transcription of gene." [SO:ke]	4967163	SOFA	SOFA	sequence	6	SO	biological_region	constitutive_promoter
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002050	"A promoter that allows for continual transcription of gene." [SO:ke]	5741665	SOFA	SOFA	sequence	7	SO	region	constitutive_promoter
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002050	"A promoter that allows for continual transcription of gene." [SO:ke]	6311323	SOFA	SOFA	sequence	8	SO	sequence_feature	constitutive_promoter
SO:0002051	\N	\N	"A promoter whereby activity is induced by the presence or absence of biotic or abiotic factors." [SO:ke]	SO:0002051	"A promoter whereby activity is induced by the presence or absence of biotic or abiotic factors." [SO:ke]	46912	\N	\N	sequence	0	SO	inducible_promoter	inducible_promoter
SO:0000167	SO:0002051	\N	"A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery." [SO:regcreative]	SO:0002051	"A promoter whereby activity is induced by the presence or absence of biotic or abiotic factors." [SO:ke]	491718	\N	SOFA	sequence	1	SO	promoter	inducible_promoter
SO:0001055	SO:0000167	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0002051	"A promoter whereby activity is induced by the presence or absence of biotic or abiotic factors." [SO:ke]	1074389	SOFA	SOFA	sequence	2	SO	transcriptional_cis_regulatory_region	inducible_promoter
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0002051	"A promoter whereby activity is induced by the presence or absence of biotic or abiotic factors." [SO:ke]	1905549	SOFA	SOFA	sequence	3	SO	transcription_regulatory_region	inducible_promoter
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0002051	"A promoter whereby activity is induced by the presence or absence of biotic or abiotic factors." [SO:ke]	2929976	SOFA	SOFA	sequence	4	SO	regulatory_region	inducible_promoter
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0002051	"A promoter whereby activity is induced by the presence or absence of biotic or abiotic factors." [SO:ke]	4003002	SOFA	SOFA	sequence	5	SO	gene_member_region	inducible_promoter
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002051	"A promoter whereby activity is induced by the presence or absence of biotic or abiotic factors." [SO:ke]	4967164	SOFA	SOFA	sequence	6	SO	biological_region	inducible_promoter
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002051	"A promoter whereby activity is induced by the presence or absence of biotic or abiotic factors." [SO:ke]	5741666	SOFA	SOFA	sequence	7	SO	region	inducible_promoter
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002051	"A promoter whereby activity is induced by the presence or absence of biotic or abiotic factors." [SO:ke]	6311324	SOFA	SOFA	sequence	8	SO	sequence_feature	inducible_promoter
SO:0002052	\N	\N	"A variant where the mutated gene product adversely affects the other (wild type) gene product." [SO:ke]	SO:0002052	"A variant where the mutated gene product adversely affects the other (wild type) gene product." [SO:ke]	46913	\N	\N	sequence	0	SO	dominant_negative_variant	dominant_negative_variant
SO:0001536	SO:0002052	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0002052	"A variant where the mutated gene product adversely affects the other (wild type) gene product." [SO:ke]	491719	\N	\N	sequence	1	SO	functional_variant	dominant_negative_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002052	"A variant where the mutated gene product adversely affects the other (wild type) gene product." [SO:ke]	1074390	\N	\N	sequence	2	SO	sequence_variant	dominant_negative_variant
SO:0002053	\N	\N	"A sequence variant whereby new or enhanced function is conferred on the gene product." [SO:ke]	SO:0002053	"A sequence variant whereby new or enhanced function is conferred on the gene product." [SO:ke]	46914	\N	\N	sequence	0	SO	gain_of_function_variant	gain_of_function_variant
SO:0001536	SO:0002053	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0002053	"A sequence variant whereby new or enhanced function is conferred on the gene product." [SO:ke]	491720	\N	\N	sequence	1	SO	functional_variant	gain_of_function_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002053	"A sequence variant whereby new or enhanced function is conferred on the gene product." [SO:ke]	1074391	\N	\N	sequence	2	SO	sequence_variant	gain_of_function_variant
SO:0002054	\N	\N	"A sequence variant whereby the gene product has diminished or abolished function." [SO:ke]	SO:0002054	"A sequence variant whereby the gene product has diminished or abolished function." [SO:ke]	46915	\N	\N	sequence	0	SO	loss_of_function_variant	loss_of_function_variant
SO:0001536	SO:0002054	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0002054	"A sequence variant whereby the gene product has diminished or abolished function." [SO:ke]	491721	\N	\N	sequence	1	SO	functional_variant	loss_of_function_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002054	"A sequence variant whereby the gene product has diminished or abolished function." [SO:ke]	1074392	\N	\N	sequence	2	SO	sequence_variant	loss_of_function_variant
SO:0002055	\N	\N	"A variant whereby the gene product is not functional or the gene product is not produced." [SO:ke]	SO:0002055	"A variant whereby the gene product is not functional or the gene product is not produced." [SO:ke]	46916	\N	\N	sequence	0	SO	null_mutation	null_mutation
SO:0001536	SO:0002055	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0002055	"A variant whereby the gene product is not functional or the gene product is not produced." [SO:ke]	491722	\N	\N	sequence	1	SO	functional_variant	null_mutation
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002055	"A variant whereby the gene product is not functional or the gene product is not produced." [SO:ke]	1074393	\N	\N	sequence	2	SO	sequence_variant	null_mutation
SO:0002056	\N	\N	"An intronic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	SO:0002056	"An intronic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	46917	\N	\N	sequence	0	SO	intronic_splicing_silencer	intronic_splicing_silencer
SO:0000188	SO:0002056	\N	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0002056	"An intronic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	491723	\N	SOFA	sequence	1	SO	intron	intronic_splicing_silencer
SO:0000625	SO:0002056	\N	"A regulatory region which upon binding of transcription factors, suppress the transcription of the gene or genes they control." [SO:ke]	SO:0002056	"An intronic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	491724	\N	SOFA	sequence	1	SO	silencer	intronic_splicing_silencer
SO:0000835	SO:0000188	\N	"A part of a primary transcript." [SO:ke]	SO:0002056	"An intronic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	1074394	SOFA	SOFA	sequence	2	SO	primary_transcript_region	intronic_splicing_silencer
SO:0000727	SO:0000625	\N	"A regulatory region where transcription factor binding sites clustered to regulate various aspects of transcription activities. (CRMs can be located a few kb to hundred kb upstream of the basal promoter, in the coding sequence, within introns, or in the downstream 3'UTR sequences, as well as on different chromosome). A single gene can be regulated by multiple CRMs to give precise control of its spatial and temporal expression. CRMs function as nodes in large, intertwined regulatory network." [PMID:19660565, SO:SG]	SO:0002056	"An intronic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	1074395	SOFA	SOFA	sequence	2	SO	CRM	intronic_splicing_silencer
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0002056	"An intronic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	1905550	SOFA	SOFA	sequence	3	SO	primary_transcript	intronic_splicing_silencer
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0002056	"An intronic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	1905551	SOFA	SOFA	sequence	3	SO	transcript_region	intronic_splicing_silencer
SO:0001055	SO:0000727	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0002056	"An intronic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	1905552	SOFA	SOFA	sequence	3	SO	transcriptional_cis_regulatory_region	intronic_splicing_silencer
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002056	"An intronic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	2929977	SOFA	SOFA	sequence	4	SO	transcript	intronic_splicing_silencer
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002056	"An intronic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	2929978	SOFA	SOFA	sequence	4	SO	transcript	intronic_splicing_silencer
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002056	"An intronic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	2929979	SOFA	SOFA	sequence	4	SO	biological_region	intronic_splicing_silencer
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0002056	"An intronic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	2929980	SOFA	SOFA	sequence	4	SO	transcription_regulatory_region	intronic_splicing_silencer
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002056	"An intronic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	4003003	SOFA	SOFA	sequence	5	SO	gene_member_region	intronic_splicing_silencer
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002056	"An intronic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	6146691	SOFA	SOFA	sequence	8	SO	region	intronic_splicing_silencer
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0002056	"An intronic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	4003005	SOFA	SOFA	sequence	5	SO	regulatory_region	intronic_splicing_silencer
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002056	"An intronic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	5741668	SOFA	SOFA	sequence	7	SO	biological_region	intronic_splicing_silencer
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002056	"An intronic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	6469781	SOFA	SOFA	sequence	9	SO	sequence_feature	intronic_splicing_silencer
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0002056	"An intronic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	4967167	SOFA	SOFA	sequence	6	SO	gene_member_region	intronic_splicing_silencer
SO:0002058	\N	\N	"An exonic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	SO:0002058	"An exonic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	46918	\N	\N	sequence	0	SO	exonic_splicing_silencer	exonic_splicing_silencer
SO:0000625	SO:0002058	\N	"A regulatory region which upon binding of transcription factors, suppress the transcription of the gene or genes they control." [SO:ke]	SO:0002058	"An exonic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	491725	\N	SOFA	sequence	1	SO	silencer	exonic_splicing_silencer
SO:0000852	SO:0002058	\N	"A region of an exon." [RSC:cb]	SO:0002058	"An exonic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	491726	\N	SOFA	sequence	1	SO	exon_region	exonic_splicing_silencer
SO:0000727	SO:0000625	\N	"A regulatory region where transcription factor binding sites clustered to regulate various aspects of transcription activities. (CRMs can be located a few kb to hundred kb upstream of the basal promoter, in the coding sequence, within introns, or in the downstream 3'UTR sequences, as well as on different chromosome). A single gene can be regulated by multiple CRMs to give precise control of its spatial and temporal expression. CRMs function as nodes in large, intertwined regulatory network." [PMID:19660565, SO:SG]	SO:0002058	"An exonic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	1074396	SOFA	SOFA	sequence	2	SO	CRM	exonic_splicing_silencer
SO:0000147	SO:0000852	\N	"A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing." [SO:ke]	SO:0002058	"An exonic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	1074397	SOFA	SOFA	sequence	2	SO	exon	exonic_splicing_silencer
SO:0000833	SO:0000852	\N	"A region of a transcript." [SO:ke]	SO:0002058	"An exonic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	1074398	SOFA	SOFA	sequence	2	SO	transcript_region	exonic_splicing_silencer
SO:0001055	SO:0000727	\N	"A regulatory_region that modulates the transcription of a gene or genes." [PMID:9679020, SO:regcreative]	SO:0002058	"An exonic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	1905553	SOFA	SOFA	sequence	3	SO	transcriptional_cis_regulatory_region	exonic_splicing_silencer
SO:0000833	SO:0000147	\N	"A region of a transcript." [SO:ke]	SO:0002058	"An exonic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	1905554	SOFA	SOFA	sequence	3	SO	transcript_region	exonic_splicing_silencer
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002058	"An exonic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	2929982	SOFA	SOFA	sequence	4	SO	transcript	exonic_splicing_silencer
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002058	"An exonic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	2929983	SOFA	SOFA	sequence	4	SO	biological_region	exonic_splicing_silencer
SO:0001679	SO:0001055	\N	"A regulatory region that is involved in the control of the process of transcription." [SO:ke]	SO:0002058	"An exonic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	2929981	SOFA	SOFA	sequence	4	SO	transcription_regulatory_region	exonic_splicing_silencer
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002058	"An exonic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	3174024	SOFA	SOFA	sequence	5	SO	gene_member_region	exonic_splicing_silencer
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002058	"An exonic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	5996472	SOFA	SOFA	sequence	8	SO	region	exonic_splicing_silencer
SO:0005836	SO:0001679	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0002058	"An exonic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	4003006	SOFA	SOFA	sequence	5	SO	regulatory_region	exonic_splicing_silencer
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002058	"An exonic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	5741669	SOFA	SOFA	sequence	7	SO	biological_region	exonic_splicing_silencer
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002058	"An exonic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	6409726	SOFA	SOFA	sequence	9	SO	sequence_feature	exonic_splicing_silencer
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0002058	"An exonic  splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control." [PMID:23241926, SO:ke]	4967168	SOFA	SOFA	sequence	6	SO	gene_member_region	exonic_splicing_silencer
SO:0002059	\N	\N	"A regulatory_region that promotes or induces the process of recombination." [PMID:8861911, SGD:se]	SO:0002059	"A regulatory_region that promotes or induces the process of recombination." [PMID:8861911, SGD:se]	46919	\N	\N	sequence	0	SO	recombination_enhancer	recombination_enhancer
SO:0001681	SO:0002059	\N	"A regulatory region that is involved in the control of the process of recombination." [SO:ke]	SO:0002059	"A regulatory_region that promotes or induces the process of recombination." [PMID:8861911, SGD:se]	491727	\N	\N	sequence	1	SO	recombination_regulatory_region	recombination_enhancer
SO:0005836	SO:0001681	\N	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0002059	"A regulatory_region that promotes or induces the process of recombination." [PMID:8861911, SGD:se]	1074399	\N	SOFA	sequence	2	SO	regulatory_region	recombination_enhancer
SO:0000831	SO:0005836	\N	"A region of a gene." [SO:ke]	SO:0002059	"A regulatory_region that promotes or induces the process of recombination." [PMID:8861911, SGD:se]	1905557	SOFA	SOFA	sequence	3	SO	gene_member_region	recombination_enhancer
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002059	"A regulatory_region that promotes or induces the process of recombination." [PMID:8861911, SGD:se]	2929986	SOFA	SOFA	sequence	4	SO	biological_region	recombination_enhancer
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002059	"A regulatory_region that promotes or induces the process of recombination." [PMID:8861911, SGD:se]	4003009	SOFA	SOFA	sequence	5	SO	region	recombination_enhancer
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002059	"A regulatory_region that promotes or induces the process of recombination." [PMID:8861911, SGD:se]	4967170	SOFA	SOFA	sequence	6	SO	sequence_feature	recombination_enhancer
SO:0002060	\N	\N	"A translocation where the regions involved are from different chromosomes." [NCBI:th]	SO:0002060	"A translocation where the regions involved are from different chromosomes." [NCBI:th]	46920	\N	\N	sequence	0	SO	interchromosomal_translocation	interchromosomal_translocation
SO:1000044	SO:0002060	\N	"A chromosomal mutation. Rearrangements that alter the pairing of telomeres are classified as translocations." [FB:reference_manual]	SO:0002060	"A translocation where the regions involved are from different chromosomes." [NCBI:th]	491728	\N	\N	sequence	1	SO	chromosomal_translocation	interchromosomal_translocation
SO:0000199	SO:1000044	\N	"A region of nucleotide sequence that has translocated to a new position. The observed adjacency of two previously separated regions." [NCBI:th, SO:ke]	SO:0002060	"A translocation where the regions involved are from different chromosomes." [NCBI:th]	1074400	\N	DBVAR	sequence	2	SO	translocation	interchromosomal_translocation
SO:1000031	SO:1000044	\N	"A chromosomal structure variation whereby more than one chromosome is involved." [SO:ke]	SO:0002060	"A translocation where the regions involved are from different chromosomes." [NCBI:th]	1074401	\N	\N	sequence	2	SO	interchromosomal_mutation	interchromosomal_translocation
SO:0001785	SO:0000199	\N	"" []	SO:0002060	"A translocation where the regions involved are from different chromosomes." [NCBI:th]	1905558	DBVAR	DBVAR	sequence	3	SO	structural_alteration	interchromosomal_translocation
SO:1000183	SO:1000031	\N	"" []	SO:0002060	"A translocation where the regions involved are from different chromosomes." [NCBI:th]	1905559	\N	\N	sequence	3	SO	chromosome_structure_variation	interchromosomal_translocation
SO:0001059	SO:0001785	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0002060	"A translocation where the regions involved are from different chromosomes." [NCBI:th]	2929987	DBVAR	SOFA	sequence	4	SO	sequence_alteration	interchromosomal_translocation
SO:0000240	SO:1000183	\N	"" []	SO:0002060	"A translocation where the regions involved are from different chromosomes." [NCBI:th]	2929988	\N	\N	sequence	4	SO	chromosome_variation	interchromosomal_translocation
SO:0002072	SO:0001059	\N	"" []	SO:0002060	"A translocation where the regions involved are from different chromosomes." [NCBI:th]	4003010	SOFA	\N	sequence	5	SO	sequence_comparison	interchromosomal_translocation
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0002060	"A translocation where the regions involved are from different chromosomes." [NCBI:th]	4003011	\N	\N	sequence	5	SO	variant_collection	interchromosomal_translocation
SO:0001524	SO:0000240	\N	"" []	SO:0002060	"A translocation where the regions involved are from different chromosomes." [NCBI:th]	4003012	\N	\N	sequence	5	SO	chromosomally_aberrant_genome	interchromosomal_translocation
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002060	"A translocation where the regions involved are from different chromosomes." [NCBI:th]	4967171	\N	SOFA	sequence	6	SO	sequence_feature	interchromosomal_translocation
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0002060	"A translocation where the regions involved are from different chromosomes." [NCBI:th]	4967172	\N	\N	sequence	6	SO	sequence_collection	interchromosomal_translocation
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0002060	"A translocation where the regions involved are from different chromosomes." [NCBI:th]	4967173	\N	\N	sequence	6	SO	variant_genome	interchromosomal_translocation
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0002060	"A translocation where the regions involved are from different chromosomes." [NCBI:th]	5741670	\N	\N	sequence	7	SO	genome	interchromosomal_translocation
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0002060	"A translocation where the regions involved are from different chromosomes." [NCBI:th]	6311325	\N	\N	sequence	8	SO	sequence_collection	interchromosomal_translocation
SO:0002061	\N	\N	"A translocation where the regions involved are from the same chromosome." [NCBI:th]	SO:0002061	"A translocation where the regions involved are from the same chromosome." [NCBI:th]	46921	\N	\N	sequence	0	SO	intrachromosomal_translocation	intrachromosomal_translocation
SO:1000044	SO:0002061	\N	"A chromosomal mutation. Rearrangements that alter the pairing of telomeres are classified as translocations." [FB:reference_manual]	SO:0002061	"A translocation where the regions involved are from the same chromosome." [NCBI:th]	491729	\N	\N	sequence	1	SO	chromosomal_translocation	intrachromosomal_translocation
SO:0000199	SO:1000044	\N	"A region of nucleotide sequence that has translocated to a new position. The observed adjacency of two previously separated regions." [NCBI:th, SO:ke]	SO:0002061	"A translocation where the regions involved are from the same chromosome." [NCBI:th]	1074402	\N	DBVAR	sequence	2	SO	translocation	intrachromosomal_translocation
SO:1000031	SO:1000044	\N	"A chromosomal structure variation whereby more than one chromosome is involved." [SO:ke]	SO:0002061	"A translocation where the regions involved are from the same chromosome." [NCBI:th]	1074403	\N	\N	sequence	2	SO	interchromosomal_mutation	intrachromosomal_translocation
SO:0001785	SO:0000199	\N	"" []	SO:0002061	"A translocation where the regions involved are from the same chromosome." [NCBI:th]	1905560	DBVAR	DBVAR	sequence	3	SO	structural_alteration	intrachromosomal_translocation
SO:1000183	SO:1000031	\N	"" []	SO:0002061	"A translocation where the regions involved are from the same chromosome." [NCBI:th]	1905561	\N	\N	sequence	3	SO	chromosome_structure_variation	intrachromosomal_translocation
SO:0001059	SO:0001785	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0002061	"A translocation where the regions involved are from the same chromosome." [NCBI:th]	2929989	DBVAR	SOFA	sequence	4	SO	sequence_alteration	intrachromosomal_translocation
SO:0000240	SO:1000183	\N	"" []	SO:0002061	"A translocation where the regions involved are from the same chromosome." [NCBI:th]	2929990	\N	\N	sequence	4	SO	chromosome_variation	intrachromosomal_translocation
SO:0002072	SO:0001059	\N	"" []	SO:0002061	"A translocation where the regions involved are from the same chromosome." [NCBI:th]	4003013	SOFA	\N	sequence	5	SO	sequence_comparison	intrachromosomal_translocation
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0002061	"A translocation where the regions involved are from the same chromosome." [NCBI:th]	4003014	\N	\N	sequence	5	SO	variant_collection	intrachromosomal_translocation
SO:0001524	SO:0000240	\N	"" []	SO:0002061	"A translocation where the regions involved are from the same chromosome." [NCBI:th]	4003015	\N	\N	sequence	5	SO	chromosomally_aberrant_genome	intrachromosomal_translocation
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002061	"A translocation where the regions involved are from the same chromosome." [NCBI:th]	4967174	\N	SOFA	sequence	6	SO	sequence_feature	intrachromosomal_translocation
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0002061	"A translocation where the regions involved are from the same chromosome." [NCBI:th]	4967175	\N	\N	sequence	6	SO	sequence_collection	intrachromosomal_translocation
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0002061	"A translocation where the regions involved are from the same chromosome." [NCBI:th]	4967176	\N	\N	sequence	6	SO	variant_genome	intrachromosomal_translocation
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0002061	"A translocation where the regions involved are from the same chromosome." [NCBI:th]	5741671	\N	\N	sequence	7	SO	genome	intrachromosomal_translocation
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0002061	"A translocation where the regions involved are from the same chromosome." [NCBI:th]	6311326	\N	\N	sequence	8	SO	sequence_collection	intrachromosomal_translocation
SO:0002062	\N	\N	"A contiguous cluster of translocations, usually the result of a single catastrophic event such as chromothripsis or chromoanasynthesis." [NCBI:th]	SO:0002062	"A contiguous cluster of translocations, usually the result of a single catastrophic event such as chromothripsis or chromoanasynthesis." [NCBI:th]	46922	\N	\N	sequence	0	SO	complex_chromosomal_rearrangement	complex_chromosomal_rearrangement
SO:0001784	SO:0002062	\N	"A structural sequence alteration or rearrangement encompassing one or more genome fragments, with 4 or more breakpoints." [FB:reference_manual, NCBI:th, SO:ke]	SO:0002062	"A contiguous cluster of translocations, usually the result of a single catastrophic event such as chromothripsis or chromoanasynthesis." [NCBI:th]	491730	\N	DBVAR	sequence	1	SO	complex_structural_alteration	complex_chromosomal_rearrangement
SO:0001785	SO:0001784	\N	"" []	SO:0002062	"A contiguous cluster of translocations, usually the result of a single catastrophic event such as chromothripsis or chromoanasynthesis." [NCBI:th]	1074404	DBVAR	DBVAR	sequence	2	SO	structural_alteration	complex_chromosomal_rearrangement
SO:1000183	SO:0001784	\N	"" []	SO:0002062	"A contiguous cluster of translocations, usually the result of a single catastrophic event such as chromothripsis or chromoanasynthesis." [NCBI:th]	1074405	DBVAR	\N	sequence	2	SO	chromosome_structure_variation	complex_chromosomal_rearrangement
SO:0001059	SO:0001785	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0002062	"A contiguous cluster of translocations, usually the result of a single catastrophic event such as chromothripsis or chromoanasynthesis." [NCBI:th]	1905562	DBVAR	SOFA	sequence	3	SO	sequence_alteration	complex_chromosomal_rearrangement
SO:0000240	SO:1000183	\N	"" []	SO:0002062	"A contiguous cluster of translocations, usually the result of a single catastrophic event such as chromothripsis or chromoanasynthesis." [NCBI:th]	1905563	\N	\N	sequence	3	SO	chromosome_variation	complex_chromosomal_rearrangement
SO:0002072	SO:0001059	\N	"" []	SO:0002062	"A contiguous cluster of translocations, usually the result of a single catastrophic event such as chromothripsis or chromoanasynthesis." [NCBI:th]	2929991	SOFA	\N	sequence	4	SO	sequence_comparison	complex_chromosomal_rearrangement
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:0002062	"A contiguous cluster of translocations, usually the result of a single catastrophic event such as chromothripsis or chromoanasynthesis." [NCBI:th]	2929992	\N	\N	sequence	4	SO	variant_collection	complex_chromosomal_rearrangement
SO:0001524	SO:0000240	\N	"" []	SO:0002062	"A contiguous cluster of translocations, usually the result of a single catastrophic event such as chromothripsis or chromoanasynthesis." [NCBI:th]	2929993	\N	\N	sequence	4	SO	chromosomally_aberrant_genome	complex_chromosomal_rearrangement
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002062	"A contiguous cluster of translocations, usually the result of a single catastrophic event such as chromothripsis or chromoanasynthesis." [NCBI:th]	4003016	\N	SOFA	sequence	5	SO	sequence_feature	complex_chromosomal_rearrangement
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0002062	"A contiguous cluster of translocations, usually the result of a single catastrophic event such as chromothripsis or chromoanasynthesis." [NCBI:th]	4003017	\N	\N	sequence	5	SO	sequence_collection	complex_chromosomal_rearrangement
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:0002062	"A contiguous cluster of translocations, usually the result of a single catastrophic event such as chromothripsis or chromoanasynthesis." [NCBI:th]	4003018	\N	\N	sequence	5	SO	variant_genome	complex_chromosomal_rearrangement
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:0002062	"A contiguous cluster of translocations, usually the result of a single catastrophic event such as chromothripsis or chromoanasynthesis." [NCBI:th]	4967177	\N	\N	sequence	6	SO	genome	complex_chromosomal_rearrangement
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:0002062	"A contiguous cluster of translocations, usually the result of a single catastrophic event such as chromothripsis or chromoanasynthesis." [NCBI:th]	5741672	\N	\N	sequence	7	SO	sequence_collection	complex_chromosomal_rearrangement
SO:0002063	\N	\N	"An insertion of sequence from the Alu family of mobile elements." [NCBI:th]	SO:0002063	"An insertion of sequence from the Alu family of mobile elements." [NCBI:th]	46923	\N	\N	sequence	0	SO	Alu_insertion	Alu_insertion
SO:0001837	SO:0002063	\N	"A kind of insertion where the inserted sequence is a mobile element." [EBI:dvga]	SO:0002063	"An insertion of sequence from the Alu family of mobile elements." [NCBI:th]	491731	\N	\N	sequence	1	SO	mobile_element_insertion	Alu_insertion
SO:0000667	SO:0001837	\N	"The sequence of one or more nucleotides added between two adjacent nucleotides in the sequence." [SO:ke]	SO:0002063	"An insertion of sequence from the Alu family of mobile elements." [NCBI:th]	1074406	\N	DBVAR,SOFA	sequence	2	SO	insertion	Alu_insertion
SO:0001059	SO:0000667	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0002063	"An insertion of sequence from the Alu family of mobile elements." [NCBI:th]	1905564	DBVAR,SOFA	SOFA	sequence	3	SO	sequence_alteration	Alu_insertion
SO:0001411	SO:0000667	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002063	"An insertion of sequence from the Alu family of mobile elements." [NCBI:th]	1905565	DBVAR,SOFA	SOFA	sequence	3	SO	biological_region	Alu_insertion
SO:0002072	SO:0001059	\N	"" []	SO:0002063	"An insertion of sequence from the Alu family of mobile elements." [NCBI:th]	2929994	SOFA	\N	sequence	4	SO	sequence_comparison	Alu_insertion
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002063	"An insertion of sequence from the Alu family of mobile elements." [NCBI:th]	2929995	SOFA	SOFA	sequence	4	SO	region	Alu_insertion
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002063	"An insertion of sequence from the Alu family of mobile elements." [NCBI:th]	4003019	\N	SOFA	sequence	5	SO	sequence_feature	Alu_insertion
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002063	"An insertion of sequence from the Alu family of mobile elements." [NCBI:th]	4003020	SOFA	SOFA	sequence	5	SO	sequence_feature	Alu_insertion
SO:0002064	\N	\N	"An insertion from the Line1 family of mobile elements." [NCBI:th]	SO:0002064	"An insertion from the Line1 family of mobile elements." [NCBI:th]	46924	\N	\N	sequence	0	SO	LINE1_insertion	LINE1_insertion
SO:0001837	SO:0002064	\N	"A kind of insertion where the inserted sequence is a mobile element." [EBI:dvga]	SO:0002064	"An insertion from the Line1 family of mobile elements." [NCBI:th]	491732	\N	\N	sequence	1	SO	mobile_element_insertion	LINE1_insertion
SO:0000667	SO:0001837	\N	"The sequence of one or more nucleotides added between two adjacent nucleotides in the sequence." [SO:ke]	SO:0002064	"An insertion from the Line1 family of mobile elements." [NCBI:th]	1074407	\N	DBVAR,SOFA	sequence	2	SO	insertion	LINE1_insertion
SO:0001059	SO:0000667	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0002064	"An insertion from the Line1 family of mobile elements." [NCBI:th]	1905566	DBVAR,SOFA	SOFA	sequence	3	SO	sequence_alteration	LINE1_insertion
SO:0001411	SO:0000667	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002064	"An insertion from the Line1 family of mobile elements." [NCBI:th]	1905567	DBVAR,SOFA	SOFA	sequence	3	SO	biological_region	LINE1_insertion
SO:0002072	SO:0001059	\N	"" []	SO:0002064	"An insertion from the Line1 family of mobile elements." [NCBI:th]	2929996	SOFA	\N	sequence	4	SO	sequence_comparison	LINE1_insertion
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002064	"An insertion from the Line1 family of mobile elements." [NCBI:th]	2929997	SOFA	SOFA	sequence	4	SO	region	LINE1_insertion
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002064	"An insertion from the Line1 family of mobile elements." [NCBI:th]	4003021	\N	SOFA	sequence	5	SO	sequence_feature	LINE1_insertion
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002064	"An insertion from the Line1 family of mobile elements." [NCBI:th]	4003022	SOFA	SOFA	sequence	5	SO	sequence_feature	LINE1_insertion
SO:0002065	\N	\N	"An insertion of sequence from the SVA family of mobile elements." [NCBI:th]	SO:0002065	"An insertion of sequence from the SVA family of mobile elements." [NCBI:th]	46925	\N	\N	sequence	0	SO	SVA_insertion	SVA_insertion
SO:0001837	SO:0002065	\N	"A kind of insertion where the inserted sequence is a mobile element." [EBI:dvga]	SO:0002065	"An insertion of sequence from the SVA family of mobile elements." [NCBI:th]	491733	\N	\N	sequence	1	SO	mobile_element_insertion	SVA_insertion
SO:0000667	SO:0001837	\N	"The sequence of one or more nucleotides added between two adjacent nucleotides in the sequence." [SO:ke]	SO:0002065	"An insertion of sequence from the SVA family of mobile elements." [NCBI:th]	1074408	\N	DBVAR,SOFA	sequence	2	SO	insertion	SVA_insertion
SO:0001059	SO:0000667	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0002065	"An insertion of sequence from the SVA family of mobile elements." [NCBI:th]	1905568	DBVAR,SOFA	SOFA	sequence	3	SO	sequence_alteration	SVA_insertion
SO:0001411	SO:0000667	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002065	"An insertion of sequence from the SVA family of mobile elements." [NCBI:th]	1905569	DBVAR,SOFA	SOFA	sequence	3	SO	biological_region	SVA_insertion
SO:0002072	SO:0001059	\N	"" []	SO:0002065	"An insertion of sequence from the SVA family of mobile elements." [NCBI:th]	2929998	SOFA	\N	sequence	4	SO	sequence_comparison	SVA_insertion
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002065	"An insertion of sequence from the SVA family of mobile elements." [NCBI:th]	2929999	SOFA	SOFA	sequence	4	SO	region	SVA_insertion
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002065	"An insertion of sequence from the SVA family of mobile elements." [NCBI:th]	4003023	\N	SOFA	sequence	5	SO	sequence_feature	SVA_insertion
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002065	"An insertion of sequence from the SVA family of mobile elements." [NCBI:th]	4003024	SOFA	SOFA	sequence	5	SO	sequence_feature	SVA_insertion
SO:0002066	\N	\N	"A deletion of a mobile element when comparing a reference sequence (has mobile element) to a individual sequence (does not have mobile element)." [NCBI:th]	SO:0002066	"A deletion of a mobile element when comparing a reference sequence (has mobile element) to a individual sequence (does not have mobile element)." [NCBI:th]	46926	\N	\N	sequence	0	SO	mobile_element_deletion	mobile_element_deletion
SO:0000159	SO:0002066	\N	"The point at which one or more contiguous nucleotides were excised." [SO:ke]	SO:0002066	"A deletion of a mobile element when comparing a reference sequence (has mobile element) to a individual sequence (does not have mobile element)." [NCBI:th]	491734	\N	SOFA	sequence	1	SO	deletion	mobile_element_deletion
SO:0001059	SO:0000159	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0002066	"A deletion of a mobile element when comparing a reference sequence (has mobile element) to a individual sequence (does not have mobile element)." [NCBI:th]	1074409	SOFA	SOFA	sequence	2	SO	sequence_alteration	mobile_element_deletion
SO:0001411	SO:0000159	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002066	"A deletion of a mobile element when comparing a reference sequence (has mobile element) to a individual sequence (does not have mobile element)." [NCBI:th]	1074410	SOFA	SOFA	sequence	2	SO	biological_region	mobile_element_deletion
SO:0002072	SO:0001059	\N	"" []	SO:0002066	"A deletion of a mobile element when comparing a reference sequence (has mobile element) to a individual sequence (does not have mobile element)." [NCBI:th]	1905570	SOFA	\N	sequence	3	SO	sequence_comparison	mobile_element_deletion
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002066	"A deletion of a mobile element when comparing a reference sequence (has mobile element) to a individual sequence (does not have mobile element)." [NCBI:th]	1905571	SOFA	SOFA	sequence	3	SO	region	mobile_element_deletion
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002066	"A deletion of a mobile element when comparing a reference sequence (has mobile element) to a individual sequence (does not have mobile element)." [NCBI:th]	2930000	\N	SOFA	sequence	4	SO	sequence_feature	mobile_element_deletion
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002066	"A deletion of a mobile element when comparing a reference sequence (has mobile element) to a individual sequence (does not have mobile element)." [NCBI:th]	2930001	SOFA	SOFA	sequence	4	SO	sequence_feature	mobile_element_deletion
SO:0002067	\N	\N	"A deletion of the HERV mobile element with respect to  a reference." [NCBI:th]	SO:0002067	"A deletion of the HERV mobile element with respect to  a reference." [NCBI:th]	46927	\N	\N	sequence	0	SO	HERV_deletion	HERV_deletion
SO:0002066	SO:0002067	\N	"A deletion of a mobile element when comparing a reference sequence (has mobile element) to a individual sequence (does not have mobile element)." [NCBI:th]	SO:0002067	"A deletion of the HERV mobile element with respect to  a reference." [NCBI:th]	491735	\N	\N	sequence	1	SO	mobile_element_deletion	HERV_deletion
SO:0000159	SO:0002066	\N	"The point at which one or more contiguous nucleotides were excised." [SO:ke]	SO:0002067	"A deletion of the HERV mobile element with respect to  a reference." [NCBI:th]	1074411	\N	SOFA	sequence	2	SO	deletion	HERV_deletion
SO:0001059	SO:0000159	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0002067	"A deletion of the HERV mobile element with respect to  a reference." [NCBI:th]	1905572	SOFA	SOFA	sequence	3	SO	sequence_alteration	HERV_deletion
SO:0001411	SO:0000159	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002067	"A deletion of the HERV mobile element with respect to  a reference." [NCBI:th]	1905573	SOFA	SOFA	sequence	3	SO	biological_region	HERV_deletion
SO:0002072	SO:0001059	\N	"" []	SO:0002067	"A deletion of the HERV mobile element with respect to  a reference." [NCBI:th]	2930002	SOFA	\N	sequence	4	SO	sequence_comparison	HERV_deletion
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002067	"A deletion of the HERV mobile element with respect to  a reference." [NCBI:th]	2930003	SOFA	SOFA	sequence	4	SO	region	HERV_deletion
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002067	"A deletion of the HERV mobile element with respect to  a reference." [NCBI:th]	4003025	\N	SOFA	sequence	5	SO	sequence_feature	HERV_deletion
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002067	"A deletion of the HERV mobile element with respect to  a reference." [NCBI:th]	4003026	SOFA	SOFA	sequence	5	SO	sequence_feature	HERV_deletion
SO:0002068	\N	\N	"A deletion of an SVA mobile element." [NCBI:th]	SO:0002068	"A deletion of an SVA mobile element." [NCBI:th]	46928	\N	\N	sequence	0	SO	SVA_deletion	SVA_deletion
SO:0002066	SO:0002068	\N	"A deletion of a mobile element when comparing a reference sequence (has mobile element) to a individual sequence (does not have mobile element)." [NCBI:th]	SO:0002068	"A deletion of an SVA mobile element." [NCBI:th]	491736	\N	\N	sequence	1	SO	mobile_element_deletion	SVA_deletion
SO:0000159	SO:0002066	\N	"The point at which one or more contiguous nucleotides were excised." [SO:ke]	SO:0002068	"A deletion of an SVA mobile element." [NCBI:th]	1074412	\N	SOFA	sequence	2	SO	deletion	SVA_deletion
SO:0001059	SO:0000159	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0002068	"A deletion of an SVA mobile element." [NCBI:th]	1905574	SOFA	SOFA	sequence	3	SO	sequence_alteration	SVA_deletion
SO:0001411	SO:0000159	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002068	"A deletion of an SVA mobile element." [NCBI:th]	1905575	SOFA	SOFA	sequence	3	SO	biological_region	SVA_deletion
SO:0002072	SO:0001059	\N	"" []	SO:0002068	"A deletion of an SVA mobile element." [NCBI:th]	2930004	SOFA	\N	sequence	4	SO	sequence_comparison	SVA_deletion
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002068	"A deletion of an SVA mobile element." [NCBI:th]	2930005	SOFA	SOFA	sequence	4	SO	region	SVA_deletion
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002068	"A deletion of an SVA mobile element." [NCBI:th]	4003027	\N	SOFA	sequence	5	SO	sequence_feature	SVA_deletion
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002068	"A deletion of an SVA mobile element." [NCBI:th]	4003028	SOFA	SOFA	sequence	5	SO	sequence_feature	SVA_deletion
SO:0002069	\N	\N	"A deletion of a LINE1 mobile element with respect to a reference." [NCBI:th]	SO:0002069	"A deletion of a LINE1 mobile element with respect to a reference." [NCBI:th]	46929	\N	\N	sequence	0	SO	LINE1_deletion	LINE1_deletion
SO:0002066	SO:0002069	\N	"A deletion of a mobile element when comparing a reference sequence (has mobile element) to a individual sequence (does not have mobile element)." [NCBI:th]	SO:0002069	"A deletion of a LINE1 mobile element with respect to a reference." [NCBI:th]	491737	\N	\N	sequence	1	SO	mobile_element_deletion	LINE1_deletion
SO:0000159	SO:0002066	\N	"The point at which one or more contiguous nucleotides were excised." [SO:ke]	SO:0002069	"A deletion of a LINE1 mobile element with respect to a reference." [NCBI:th]	1074413	\N	SOFA	sequence	2	SO	deletion	LINE1_deletion
SO:0001059	SO:0000159	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0002069	"A deletion of a LINE1 mobile element with respect to a reference." [NCBI:th]	1905576	SOFA	SOFA	sequence	3	SO	sequence_alteration	LINE1_deletion
SO:0001411	SO:0000159	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002069	"A deletion of a LINE1 mobile element with respect to a reference." [NCBI:th]	1905577	SOFA	SOFA	sequence	3	SO	biological_region	LINE1_deletion
SO:0002072	SO:0001059	\N	"" []	SO:0002069	"A deletion of a LINE1 mobile element with respect to a reference." [NCBI:th]	2930006	SOFA	\N	sequence	4	SO	sequence_comparison	LINE1_deletion
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002069	"A deletion of a LINE1 mobile element with respect to a reference." [NCBI:th]	2930007	SOFA	SOFA	sequence	4	SO	region	LINE1_deletion
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002069	"A deletion of a LINE1 mobile element with respect to a reference." [NCBI:th]	4003029	\N	SOFA	sequence	5	SO	sequence_feature	LINE1_deletion
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002069	"A deletion of a LINE1 mobile element with respect to a reference." [NCBI:th]	4003030	SOFA	SOFA	sequence	5	SO	sequence_feature	LINE1_deletion
SO:0002070	\N	\N	"A deletion of an Alu mobile element with respect to a reference." [NCBI:th]	SO:0002070	"A deletion of an Alu mobile element with respect to a reference." [NCBI:th]	46930	\N	\N	sequence	0	SO	Alu_deletion	Alu_deletion
SO:0002066	SO:0002070	\N	"A deletion of a mobile element when comparing a reference sequence (has mobile element) to a individual sequence (does not have mobile element)." [NCBI:th]	SO:0002070	"A deletion of an Alu mobile element with respect to a reference." [NCBI:th]	491738	\N	\N	sequence	1	SO	mobile_element_deletion	Alu_deletion
SO:0000159	SO:0002066	\N	"The point at which one or more contiguous nucleotides were excised." [SO:ke]	SO:0002070	"A deletion of an Alu mobile element with respect to a reference." [NCBI:th]	1074414	\N	SOFA	sequence	2	SO	deletion	Alu_deletion
SO:0001059	SO:0000159	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0002070	"A deletion of an Alu mobile element with respect to a reference." [NCBI:th]	1905578	SOFA	SOFA	sequence	3	SO	sequence_alteration	Alu_deletion
SO:0001411	SO:0000159	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002070	"A deletion of an Alu mobile element with respect to a reference." [NCBI:th]	1905579	SOFA	SOFA	sequence	3	SO	biological_region	Alu_deletion
SO:0002072	SO:0001059	\N	"" []	SO:0002070	"A deletion of an Alu mobile element with respect to a reference." [NCBI:th]	2930008	SOFA	\N	sequence	4	SO	sequence_comparison	Alu_deletion
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002070	"A deletion of an Alu mobile element with respect to a reference." [NCBI:th]	2930009	SOFA	SOFA	sequence	4	SO	region	Alu_deletion
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002070	"A deletion of an Alu mobile element with respect to a reference." [NCBI:th]	4003031	\N	SOFA	sequence	5	SO	sequence_feature	Alu_deletion
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002070	"A deletion of an Alu mobile element with respect to a reference." [NCBI:th]	4003032	SOFA	SOFA	sequence	5	SO	sequence_feature	Alu_deletion
SO:0002071	\N	\N	"A CDS that is supported by proteomics data." [SO:ke]	SO:0002071	"A CDS that is supported by proteomics data." [SO:ke]	46931	\N	\N	sequence	0	SO	CDS_supported_by_peptide_spectrum_match	CDS_supported_by_peptide_spectrum_match
SO:1001251	SO:0002071	\N	"A CDS that is supported by sequence similarity data." [SO:xp]	SO:0002071	"A CDS that is supported by proteomics data." [SO:ke]	491739	\N	\N	sequence	1	SO	CDS_supported_by_sequence_similarity_data	CDS_supported_by_peptide_spectrum_match
SO:1001254	SO:1001251	\N	"A CDS that is predicted." [SO:ke]	SO:0002071	"A CDS that is supported by proteomics data." [SO:ke]	1074415	\N	\N	sequence	2	SO	CDS_predicted	CDS_supported_by_peptide_spectrum_match
SO:0000316	SO:1001254	\N	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	SO:0002071	"A CDS that is supported by proteomics data." [SO:ke]	1905580	\N	SOFA	sequence	3	SO	CDS	CDS_supported_by_peptide_spectrum_match
SO:0000836	SO:0000316	\N	"A region of an mRNA." [SO:cb]	SO:0002071	"A CDS that is supported by proteomics data." [SO:ke]	2930010	SOFA	SOFA	sequence	4	SO	mRNA_region	CDS_supported_by_peptide_spectrum_match
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0002071	"A CDS that is supported by proteomics data." [SO:ke]	4003033	SOFA	SOFA	sequence	5	SO	mRNA	CDS_supported_by_peptide_spectrum_match
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:0002071	"A CDS that is supported by proteomics data." [SO:ke]	4003034	SOFA	SOFA	sequence	5	SO	mature_transcript_region	CDS_supported_by_peptide_spectrum_match
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0002071	"A CDS that is supported by proteomics data." [SO:ke]	4967178	SOFA	SOFA	sequence	6	SO	mature_transcript	CDS_supported_by_peptide_spectrum_match
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0002071	"A CDS that is supported by proteomics data." [SO:ke]	4967179	SOFA	SOFA	sequence	6	SO	transcript_region	CDS_supported_by_peptide_spectrum_match
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002071	"A CDS that is supported by proteomics data." [SO:ke]	5741673	SOFA	SOFA	sequence	7	SO	transcript	CDS_supported_by_peptide_spectrum_match
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002071	"A CDS that is supported by proteomics data." [SO:ke]	5741674	SOFA	SOFA	sequence	7	SO	transcript	CDS_supported_by_peptide_spectrum_match
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002071	"A CDS that is supported by proteomics data." [SO:ke]	5741675	SOFA	SOFA	sequence	7	SO	biological_region	CDS_supported_by_peptide_spectrum_match
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002071	"A CDS that is supported by proteomics data." [SO:ke]	6311327	SOFA	SOFA	sequence	8	SO	gene_member_region	CDS_supported_by_peptide_spectrum_match
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002071	"A CDS that is supported by proteomics data." [SO:ke]	6948206	SOFA	SOFA	sequence	10	SO	region	CDS_supported_by_peptide_spectrum_match
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002071	"A CDS that is supported by proteomics data." [SO:ke]	6699545	SOFA	SOFA	sequence	9	SO	biological_region	CDS_supported_by_peptide_spectrum_match
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002071	"A CDS that is supported by proteomics data." [SO:ke]	7085888	SOFA	SOFA	sequence	11	SO	sequence_feature	CDS_supported_by_peptide_spectrum_match
SO:0002072	\N	\N	"" []	SO:0002072	"" []	46932	\N	\N	sequence	0	SO	sequence_comparison	sequence_comparison
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002072	"" []	491740	\N	SOFA	sequence	1	SO	sequence_feature	sequence_comparison
SO:0002073	\N	\N	"A position or feature within a sequence that is identical to the comparable position or feature of a specified reference sequence." [SO:ke]	SO:0002073	"A position or feature within a sequence that is identical to the comparable position or feature of a specified reference sequence." [SO:ke]	46933	\N	\N	sequence	0	SO	no_sequence_alteration	no_sequence_alteration
SO:0002072	SO:0002073	\N	"" []	SO:0002073	"A position or feature within a sequence that is identical to the comparable position or feature of a specified reference sequence." [SO:ke]	491741	\N	\N	sequence	1	SO	sequence_comparison	no_sequence_alteration
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002073	"A position or feature within a sequence that is identical to the comparable position or feature of a specified reference sequence." [SO:ke]	1074416	\N	SOFA	sequence	2	SO	sequence_feature	no_sequence_alteration
SO:0002074	\N	\N	"A variant that falls in an intergenic region that is 1 kb or less between 2 genes." [SO:ke]	SO:0002074	"A variant that falls in an intergenic region that is 1 kb or less between 2 genes." [SO:ke]	46934	\N	\N	sequence	0	SO	intergenic_1kb_variant	intergenic_1kb_variant
SO:0001628	SO:0002074	\N	"A sequence variant located in the intergenic region, between genes." [SO:ke]	SO:0002074	"A variant that falls in an intergenic region that is 1 kb or less between 2 genes." [SO:ke]	491742	\N	\N	sequence	1	SO	intergenic_variant	intergenic_1kb_variant
SO:0001878	SO:0001628	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002074	"A variant that falls in an intergenic region that is 1 kb or less between 2 genes." [SO:ke]	1074417	\N	\N	sequence	2	SO	feature_variant	intergenic_1kb_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002074	"A variant that falls in an intergenic region that is 1 kb or less between 2 genes." [SO:ke]	1905581	\N	\N	sequence	3	SO	structural_variant	intergenic_1kb_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002074	"A variant that falls in an intergenic region that is 1 kb or less between 2 genes." [SO:ke]	2930011	\N	\N	sequence	4	SO	sequence_variant	intergenic_1kb_variant
SO:0002075	\N	\N	"A sequence variant that intersects an incompletely annotated transcript." [SO:ke]	SO:0002075	"A sequence variant that intersects an incompletely annotated transcript." [SO:ke]	46935	\N	\N	sequence	0	SO	incomplete_transcript_variant	incomplete_transcript_variant
SO:0001576	SO:0002075	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002075	"A sequence variant that intersects an incompletely annotated transcript." [SO:ke]	491743	\N	\N	sequence	1	SO	transcript_variant	incomplete_transcript_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0002075	"A sequence variant that intersects an incompletely annotated transcript." [SO:ke]	1074418	\N	\N	sequence	2	SO	gene_variant	incomplete_transcript_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002075	"A sequence variant that intersects an incompletely annotated transcript." [SO:ke]	1905582	\N	\N	sequence	3	SO	feature_variant	incomplete_transcript_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002075	"A sequence variant that intersects an incompletely annotated transcript." [SO:ke]	2930012	\N	\N	sequence	4	SO	structural_variant	incomplete_transcript_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002075	"A sequence variant that intersects an incompletely annotated transcript." [SO:ke]	4003035	\N	\N	sequence	5	SO	sequence_variant	incomplete_transcript_variant
SO:0002076	\N	\N	"A sequence variant that intersects the 3' UTR of an incompletely annotated transcript." [SO:ke]	SO:0002076	"A sequence variant that intersects the 3' UTR of an incompletely annotated transcript." [SO:ke]	46936	\N	\N	sequence	0	SO	incomplete_transcript_3UTR_variant	incomplete_transcript_3UTR_variant
SO:0002075	SO:0002076	\N	"A sequence variant that intersects an incompletely annotated transcript." [SO:ke]	SO:0002076	"A sequence variant that intersects the 3' UTR of an incompletely annotated transcript." [SO:ke]	491744	\N	\N	sequence	1	SO	incomplete_transcript_variant	incomplete_transcript_3UTR_variant
SO:0001576	SO:0002075	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002076	"A sequence variant that intersects the 3' UTR of an incompletely annotated transcript." [SO:ke]	1074419	\N	\N	sequence	2	SO	transcript_variant	incomplete_transcript_3UTR_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0002076	"A sequence variant that intersects the 3' UTR of an incompletely annotated transcript." [SO:ke]	1905583	\N	\N	sequence	3	SO	gene_variant	incomplete_transcript_3UTR_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002076	"A sequence variant that intersects the 3' UTR of an incompletely annotated transcript." [SO:ke]	2930013	\N	\N	sequence	4	SO	feature_variant	incomplete_transcript_3UTR_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002076	"A sequence variant that intersects the 3' UTR of an incompletely annotated transcript." [SO:ke]	4003036	\N	\N	sequence	5	SO	structural_variant	incomplete_transcript_3UTR_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002076	"A sequence variant that intersects the 3' UTR of an incompletely annotated transcript." [SO:ke]	4967180	\N	\N	sequence	6	SO	sequence_variant	incomplete_transcript_3UTR_variant
SO:0002077	\N	\N	"A sequence variant that intersects the 5' UTR of an incompletely annotated transcript." [SO:ke]	SO:0002077	"A sequence variant that intersects the 5' UTR of an incompletely annotated transcript." [SO:ke]	46937	\N	\N	sequence	0	SO	incomplete_transcript_5UTR_variant	incomplete_transcript_5UTR_variant
SO:0002075	SO:0002077	\N	"A sequence variant that intersects an incompletely annotated transcript." [SO:ke]	SO:0002077	"A sequence variant that intersects the 5' UTR of an incompletely annotated transcript." [SO:ke]	491745	\N	\N	sequence	1	SO	incomplete_transcript_variant	incomplete_transcript_5UTR_variant
SO:0001576	SO:0002075	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002077	"A sequence variant that intersects the 5' UTR of an incompletely annotated transcript." [SO:ke]	1074420	\N	\N	sequence	2	SO	transcript_variant	incomplete_transcript_5UTR_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0002077	"A sequence variant that intersects the 5' UTR of an incompletely annotated transcript." [SO:ke]	1905584	\N	\N	sequence	3	SO	gene_variant	incomplete_transcript_5UTR_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002077	"A sequence variant that intersects the 5' UTR of an incompletely annotated transcript." [SO:ke]	2930014	\N	\N	sequence	4	SO	feature_variant	incomplete_transcript_5UTR_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002077	"A sequence variant that intersects the 5' UTR of an incompletely annotated transcript." [SO:ke]	4003037	\N	\N	sequence	5	SO	structural_variant	incomplete_transcript_5UTR_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002077	"A sequence variant that intersects the 5' UTR of an incompletely annotated transcript." [SO:ke]	4967181	\N	\N	sequence	6	SO	sequence_variant	incomplete_transcript_5UTR_variant
SO:0002078	\N	\N	"A sequence variant that intersects the intron of an incompletely annotated transcript." [SO:ke]	SO:0002078	"A sequence variant that intersects the intron of an incompletely annotated transcript." [SO:ke]	46938	\N	\N	sequence	0	SO	incomplete_transcript_intronic_variant	incomplete_transcript_intronic_variant
SO:0002075	SO:0002078	\N	"A sequence variant that intersects an incompletely annotated transcript." [SO:ke]	SO:0002078	"A sequence variant that intersects the intron of an incompletely annotated transcript." [SO:ke]	491746	\N	\N	sequence	1	SO	incomplete_transcript_variant	incomplete_transcript_intronic_variant
SO:0001576	SO:0002075	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002078	"A sequence variant that intersects the intron of an incompletely annotated transcript." [SO:ke]	1074421	\N	\N	sequence	2	SO	transcript_variant	incomplete_transcript_intronic_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0002078	"A sequence variant that intersects the intron of an incompletely annotated transcript." [SO:ke]	1905585	\N	\N	sequence	3	SO	gene_variant	incomplete_transcript_intronic_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002078	"A sequence variant that intersects the intron of an incompletely annotated transcript." [SO:ke]	2930015	\N	\N	sequence	4	SO	feature_variant	incomplete_transcript_intronic_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002078	"A sequence variant that intersects the intron of an incompletely annotated transcript." [SO:ke]	4003038	\N	\N	sequence	5	SO	structural_variant	incomplete_transcript_intronic_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002078	"A sequence variant that intersects the intron of an incompletely annotated transcript." [SO:ke]	4967182	\N	\N	sequence	6	SO	sequence_variant	incomplete_transcript_intronic_variant
SO:0002079	\N	\N	"A sequence variant that intersects the splice region of an incompletely annotated transcript." [SO:ke]	SO:0002079	"A sequence variant that intersects the splice region of an incompletely annotated transcript." [SO:ke]	46939	\N	\N	sequence	0	SO	incomplete_transcript_splice_region_variant	incomplete_transcript_splice_region_variant
SO:0002075	SO:0002079	\N	"A sequence variant that intersects an incompletely annotated transcript." [SO:ke]	SO:0002079	"A sequence variant that intersects the splice region of an incompletely annotated transcript." [SO:ke]	491747	\N	\N	sequence	1	SO	incomplete_transcript_variant	incomplete_transcript_splice_region_variant
SO:0001576	SO:0002075	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002079	"A sequence variant that intersects the splice region of an incompletely annotated transcript." [SO:ke]	1074422	\N	\N	sequence	2	SO	transcript_variant	incomplete_transcript_splice_region_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0002079	"A sequence variant that intersects the splice region of an incompletely annotated transcript." [SO:ke]	1905586	\N	\N	sequence	3	SO	gene_variant	incomplete_transcript_splice_region_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002079	"A sequence variant that intersects the splice region of an incompletely annotated transcript." [SO:ke]	2930016	\N	\N	sequence	4	SO	feature_variant	incomplete_transcript_splice_region_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002079	"A sequence variant that intersects the splice region of an incompletely annotated transcript." [SO:ke]	4003039	\N	\N	sequence	5	SO	structural_variant	incomplete_transcript_splice_region_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002079	"A sequence variant that intersects the splice region of an incompletely annotated transcript." [SO:ke]	4967183	\N	\N	sequence	6	SO	sequence_variant	incomplete_transcript_splice_region_variant
SO:0002080	\N	\N	"A sequence variant that intersects the exon of an incompletely annotated transcript." [SO:ke]	SO:0002080	"A sequence variant that intersects the exon of an incompletely annotated transcript." [SO:ke]	46940	\N	\N	sequence	0	SO	incomplete_transcript_exonic_variant	incomplete_transcript_exonic_variant
SO:0002075	SO:0002080	\N	"A sequence variant that intersects an incompletely annotated transcript." [SO:ke]	SO:0002080	"A sequence variant that intersects the exon of an incompletely annotated transcript." [SO:ke]	491748	\N	\N	sequence	1	SO	incomplete_transcript_variant	incomplete_transcript_exonic_variant
SO:0001576	SO:0002075	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002080	"A sequence variant that intersects the exon of an incompletely annotated transcript." [SO:ke]	1074423	\N	\N	sequence	2	SO	transcript_variant	incomplete_transcript_exonic_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0002080	"A sequence variant that intersects the exon of an incompletely annotated transcript." [SO:ke]	1905587	\N	\N	sequence	3	SO	gene_variant	incomplete_transcript_exonic_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002080	"A sequence variant that intersects the exon of an incompletely annotated transcript." [SO:ke]	2930017	\N	\N	sequence	4	SO	feature_variant	incomplete_transcript_exonic_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002080	"A sequence variant that intersects the exon of an incompletely annotated transcript." [SO:ke]	4003040	\N	\N	sequence	5	SO	structural_variant	incomplete_transcript_exonic_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002080	"A sequence variant that intersects the exon of an incompletely annotated transcript." [SO:ke]	4967184	\N	\N	sequence	6	SO	sequence_variant	incomplete_transcript_exonic_variant
SO:0002081	\N	\N	"A sequence variant that intersects the coding regions of an incompletely annotated transcript." [SO:ke]	SO:0002081	"A sequence variant that intersects the coding regions of an incompletely annotated transcript." [SO:ke]	46941	\N	\N	sequence	0	SO	incomplete_transcript_CDS	incomplete_transcript_CDS
SO:0002075	SO:0002081	\N	"A sequence variant that intersects an incompletely annotated transcript." [SO:ke]	SO:0002081	"A sequence variant that intersects the coding regions of an incompletely annotated transcript." [SO:ke]	491749	\N	\N	sequence	1	SO	incomplete_transcript_variant	incomplete_transcript_CDS
SO:0001576	SO:0002075	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002081	"A sequence variant that intersects the coding regions of an incompletely annotated transcript." [SO:ke]	1074424	\N	\N	sequence	2	SO	transcript_variant	incomplete_transcript_CDS
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0002081	"A sequence variant that intersects the coding regions of an incompletely annotated transcript." [SO:ke]	1905588	\N	\N	sequence	3	SO	gene_variant	incomplete_transcript_CDS
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002081	"A sequence variant that intersects the coding regions of an incompletely annotated transcript." [SO:ke]	2930018	\N	\N	sequence	4	SO	feature_variant	incomplete_transcript_CDS
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002081	"A sequence variant that intersects the coding regions of an incompletely annotated transcript." [SO:ke]	4003041	\N	\N	sequence	5	SO	structural_variant	incomplete_transcript_CDS
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002081	"A sequence variant that intersects the coding regions of an incompletely annotated transcript." [SO:ke]	4967185	\N	\N	sequence	6	SO	sequence_variant	incomplete_transcript_CDS
SO:0002082	\N	\N	"A sequence variant that intersects the coding sequence near a splice region of an incompletely annotated transcript." [SO:ke]	SO:0002082	"A sequence variant that intersects the coding sequence near a splice region of an incompletely annotated transcript." [SO:ke]	46942	\N	\N	sequence	0	SO	incomplete_transcript_coding_splice_variant	incomplete_transcript_coding_splice_variant
SO:0002079	SO:0002082	\N	"A sequence variant that intersects the splice region of an incompletely annotated transcript." [SO:ke]	SO:0002082	"A sequence variant that intersects the coding sequence near a splice region of an incompletely annotated transcript." [SO:ke]	491750	\N	\N	sequence	1	SO	incomplete_transcript_splice_region_variant	incomplete_transcript_coding_splice_variant
SO:0002075	SO:0002079	\N	"A sequence variant that intersects an incompletely annotated transcript." [SO:ke]	SO:0002082	"A sequence variant that intersects the coding sequence near a splice region of an incompletely annotated transcript." [SO:ke]	1074425	\N	\N	sequence	2	SO	incomplete_transcript_variant	incomplete_transcript_coding_splice_variant
SO:0001576	SO:0002075	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002082	"A sequence variant that intersects the coding sequence near a splice region of an incompletely annotated transcript." [SO:ke]	1905589	\N	\N	sequence	3	SO	transcript_variant	incomplete_transcript_coding_splice_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0002082	"A sequence variant that intersects the coding sequence near a splice region of an incompletely annotated transcript." [SO:ke]	2930019	\N	\N	sequence	4	SO	gene_variant	incomplete_transcript_coding_splice_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002082	"A sequence variant that intersects the coding sequence near a splice region of an incompletely annotated transcript." [SO:ke]	4003042	\N	\N	sequence	5	SO	feature_variant	incomplete_transcript_coding_splice_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002082	"A sequence variant that intersects the coding sequence near a splice region of an incompletely annotated transcript." [SO:ke]	4967186	\N	\N	sequence	6	SO	structural_variant	incomplete_transcript_coding_splice_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002082	"A sequence variant that intersects the coding sequence near a splice region of an incompletely annotated transcript." [SO:ke]	5741676	\N	\N	sequence	7	SO	sequence_variant	incomplete_transcript_coding_splice_variant
SO:0002083	\N	\N	"A sequence variant located within 2KB 3' of a gene." [SO:ke]	SO:0002083	"A sequence variant located within 2KB 3' of a gene." [SO:ke]	46943	\N	\N	sequence	0	SO	2KB_downstream_variant	2KB_downstream_variant
SO:0001632	SO:0002083	\N	"A sequence variant located 3' of a gene." [SO:ke]	SO:0002083	"A sequence variant located within 2KB 3' of a gene." [SO:ke]	491751	\N	\N	sequence	1	SO	downstream_gene_variant	2KB_downstream_variant
SO:0001628	SO:0001632	\N	"A sequence variant located in the intergenic region, between genes." [SO:ke]	SO:0002083	"A sequence variant located within 2KB 3' of a gene." [SO:ke]	1074426	\N	\N	sequence	2	SO	intergenic_variant	2KB_downstream_variant
SO:0001878	SO:0001628	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002083	"A sequence variant located within 2KB 3' of a gene." [SO:ke]	1905590	\N	\N	sequence	3	SO	feature_variant	2KB_downstream_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002083	"A sequence variant located within 2KB 3' of a gene." [SO:ke]	2930020	\N	\N	sequence	4	SO	structural_variant	2KB_downstream_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002083	"A sequence variant located within 2KB 3' of a gene." [SO:ke]	4003043	\N	\N	sequence	5	SO	sequence_variant	2KB_downstream_variant
SO:0002084	\N	\N	"A sequence variant in which a change has occurred within the exonic region of the splice site, 1-2 bases from boundary." [SO:ke]	SO:0002084	"A sequence variant in which a change has occurred within the exonic region of the splice site, 1-2 bases from boundary." [SO:ke]	46944	\N	\N	sequence	0	SO	exonic_splice_region_variant	exonic_splice_region_variant
SO:0001630	SO:0002084	\N	"A sequence variant in which a change has occurred within the region of the splice site, either within 1-3 bases of the exon or 3-8 bases of the intron." [http://ensembl.org/info/docs/variation/index.html]	SO:0002084	"A sequence variant in which a change has occurred within the exonic region of the splice site, 1-2 bases from boundary." [SO:ke]	491752	\N	\N	sequence	1	SO	splice_region_variant	exonic_splice_region_variant
SO:0001568	SO:0001630	\N	"A sequence variant that changes the process of splicing." [SO:ke]	SO:0002084	"A sequence variant in which a change has occurred within the exonic region of the splice site, 1-2 bases from boundary." [SO:ke]	1074427	\N	\N	sequence	2	SO	splicing_variant	exonic_splice_region_variant
SO:0001576	SO:0001568	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002084	"A sequence variant in which a change has occurred within the exonic region of the splice site, 1-2 bases from boundary." [SO:ke]	1905591	\N	\N	sequence	3	SO	transcript_variant	exonic_splice_region_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0002084	"A sequence variant in which a change has occurred within the exonic region of the splice site, 1-2 bases from boundary." [SO:ke]	2930021	\N	\N	sequence	4	SO	gene_variant	exonic_splice_region_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002084	"A sequence variant in which a change has occurred within the exonic region of the splice site, 1-2 bases from boundary." [SO:ke]	4003044	\N	\N	sequence	5	SO	feature_variant	exonic_splice_region_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002084	"A sequence variant in which a change has occurred within the exonic region of the splice site, 1-2 bases from boundary." [SO:ke]	4967187	\N	\N	sequence	6	SO	structural_variant	exonic_splice_region_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002084	"A sequence variant in which a change has occurred within the exonic region of the splice site, 1-2 bases from boundary." [SO:ke]	5741677	\N	\N	sequence	7	SO	sequence_variant	exonic_splice_region_variant
SO:0002085	\N	\N	"A sequence variant whereby two genes, on the same strand have become joined." [SO:ke]	SO:0002085	"A sequence variant whereby two genes, on the same strand have become joined." [SO:ke]	46945	\N	\N	sequence	0	SO	unidirectional_gene_fusion	unidirectional_gene_fusion
SO:0001565	SO:0002085	\N	"A sequence variant whereby a two genes have become joined." [SO:ke]	SO:0002085	"A sequence variant whereby two genes, on the same strand have become joined." [SO:ke]	491753	\N	\N	sequence	1	SO	gene_fusion	unidirectional_gene_fusion
SO:0001564	SO:0001565	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0002085	"A sequence variant whereby two genes, on the same strand have become joined." [SO:ke]	1074428	\N	\N	sequence	2	SO	gene_variant	unidirectional_gene_fusion
SO:0001882	SO:0001565	\N	"A sequence variant, caused by an alteration of the genomic sequence, where a deletion fuses genomic features." [SO:ke]	SO:0002085	"A sequence variant whereby two genes, on the same strand have become joined." [SO:ke]	1074429	\N	\N	sequence	2	SO	feature_fusion	unidirectional_gene_fusion
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002085	"A sequence variant whereby two genes, on the same strand have become joined." [SO:ke]	1905592	\N	\N	sequence	3	SO	feature_variant	unidirectional_gene_fusion
SO:0001537	SO:0001882	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002085	"A sequence variant whereby two genes, on the same strand have become joined." [SO:ke]	1905593	\N	\N	sequence	3	SO	structural_variant	unidirectional_gene_fusion
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002085	"A sequence variant whereby two genes, on the same strand have become joined." [SO:ke]	2930022	\N	\N	sequence	4	SO	structural_variant	unidirectional_gene_fusion
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002085	"A sequence variant whereby two genes, on the same strand have become joined." [SO:ke]	4003045	\N	\N	sequence	5	SO	sequence_variant	unidirectional_gene_fusion
SO:0002086	\N	\N	"A sequence variant whereby two genes, on alternate strands have become joined." [SO:ke]	SO:0002086	"A sequence variant whereby two genes, on alternate strands have become joined." [SO:ke]	46946	\N	\N	sequence	0	SO	bidirectional_gene_fusion	bidirectional_gene_fusion
SO:0001565	SO:0002086	\N	"A sequence variant whereby a two genes have become joined." [SO:ke]	SO:0002086	"A sequence variant whereby two genes, on alternate strands have become joined." [SO:ke]	491754	\N	\N	sequence	1	SO	gene_fusion	bidirectional_gene_fusion
SO:0001564	SO:0001565	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0002086	"A sequence variant whereby two genes, on alternate strands have become joined." [SO:ke]	1074430	\N	\N	sequence	2	SO	gene_variant	bidirectional_gene_fusion
SO:0001882	SO:0001565	\N	"A sequence variant, caused by an alteration of the genomic sequence, where a deletion fuses genomic features." [SO:ke]	SO:0002086	"A sequence variant whereby two genes, on alternate strands have become joined." [SO:ke]	1074431	\N	\N	sequence	2	SO	feature_fusion	bidirectional_gene_fusion
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002086	"A sequence variant whereby two genes, on alternate strands have become joined." [SO:ke]	1905594	\N	\N	sequence	3	SO	feature_variant	bidirectional_gene_fusion
SO:0001537	SO:0001882	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002086	"A sequence variant whereby two genes, on alternate strands have become joined." [SO:ke]	1905595	\N	\N	sequence	3	SO	structural_variant	bidirectional_gene_fusion
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002086	"A sequence variant whereby two genes, on alternate strands have become joined." [SO:ke]	2930024	\N	\N	sequence	4	SO	structural_variant	bidirectional_gene_fusion
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002086	"A sequence variant whereby two genes, on alternate strands have become joined." [SO:ke]	4003046	\N	\N	sequence	5	SO	sequence_variant	bidirectional_gene_fusion
SO:0002087	\N	\N	"A non functional descendant of the coding portion of a coding transcript, part of a pseudogene." [SO:ke]	SO:0002087	"A non functional descendant of the coding portion of a coding transcript, part of a pseudogene." [SO:ke]	46947	\N	\N	sequence	0	SO	pseudogenic_CDS	pseudogenic_CDS
SO:0000462	SO:0002087	\N	"A non-functional descendant of a functional entity." [SO:cjm]	SO:0002087	"A non functional descendant of the coding portion of a coding transcript, part of a pseudogene." [SO:ke]	491755	\N	SOFA	sequence	1	SO	pseudogenic_region	pseudogenic_CDS
SO:0000516	SO:0002087	\N	"A non functional descendant of a transcript, part of a pseudogene." [SO:ke]	SO:0002087	"A non functional descendant of the coding portion of a coding transcript, part of a pseudogene." [SO:ke]	491756	\N	\N	sequence	1	SO	pseudogenic_transcript	pseudogenic_CDS
SO:0001411	SO:0000462	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002087	"A non functional descendant of the coding portion of a coding transcript, part of a pseudogene." [SO:ke]	1905598	SOFA	SOFA	sequence	3	SO	biological_region	pseudogenic_CDS
SO:0000336	SO:0000516	\N	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	SO:0002087	"A non functional descendant of the coding portion of a coding transcript, part of a pseudogene." [SO:ke]	1074433	\N	SOFA	sequence	2	SO	pseudogene	pseudogenic_CDS
SO:0000462	SO:0000516	\N	"A non-functional descendant of a functional entity." [SO:cjm]	SO:0002087	"A non functional descendant of the coding portion of a coding transcript, part of a pseudogene." [SO:ke]	1074434	\N	SOFA	sequence	2	SO	pseudogenic_region	pseudogenic_CDS
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002087	"A non functional descendant of the coding portion of a coding transcript, part of a pseudogene." [SO:ke]	2018250	SOFA	SOFA	sequence	4	SO	region	pseudogenic_CDS
SO:0001411	SO:0000336	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002087	"A non functional descendant of the coding portion of a coding transcript, part of a pseudogene." [SO:ke]	1905597	SOFA	SOFA	sequence	3	SO	biological_region	pseudogenic_CDS
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002087	"A non functional descendant of the coding portion of a coding transcript, part of a pseudogene." [SO:ke]	3174026	SOFA	SOFA	sequence	5	SO	sequence_feature	pseudogenic_CDS
SO:0002088	\N	\N	"A transcript variant occurring within the splice region (1-3 bases of the exon or 3-8 bases of the intron) of a non coding transcript." [SO:ke]	SO:0002088	"A transcript variant occurring within the splice region (1-3 bases of the exon or 3-8 bases of the intron) of a non coding transcript." [SO:ke]	46948	\N	\N	sequence	0	SO	non_coding_transcript_splice_region_variant	non_coding_transcript_splice_region_variant
SO:0001619	SO:0002088	\N	"A transcript variant of a non coding RNA gene." [SO:ke]	SO:0002088	"A transcript variant occurring within the splice region (1-3 bases of the exon or 3-8 bases of the intron) of a non coding transcript." [SO:ke]	491757	\N	\N	sequence	1	SO	non_coding_transcript_variant	non_coding_transcript_splice_region_variant
SO:0001630	SO:0002088	\N	"A sequence variant in which a change has occurred within the region of the splice site, either within 1-3 bases of the exon or 3-8 bases of the intron." [http://ensembl.org/info/docs/variation/index.html]	SO:0002088	"A transcript variant occurring within the splice region (1-3 bases of the exon or 3-8 bases of the intron) of a non coding transcript." [SO:ke]	491758	\N	\N	sequence	1	SO	splice_region_variant	non_coding_transcript_splice_region_variant
SO:0001576	SO:0001619	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002088	"A transcript variant occurring within the splice region (1-3 bases of the exon or 3-8 bases of the intron) of a non coding transcript." [SO:ke]	1074435	\N	\N	sequence	2	SO	transcript_variant	non_coding_transcript_splice_region_variant
SO:0001568	SO:0001630	\N	"A sequence variant that changes the process of splicing." [SO:ke]	SO:0002088	"A transcript variant occurring within the splice region (1-3 bases of the exon or 3-8 bases of the intron) of a non coding transcript." [SO:ke]	1074436	\N	\N	sequence	2	SO	splicing_variant	non_coding_transcript_splice_region_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0002088	"A transcript variant occurring within the splice region (1-3 bases of the exon or 3-8 bases of the intron) of a non coding transcript." [SO:ke]	2930028	\N	\N	sequence	4	SO	gene_variant	non_coding_transcript_splice_region_variant
SO:0001576	SO:0001568	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002088	"A transcript variant occurring within the splice region (1-3 bases of the exon or 3-8 bases of the intron) of a non coding transcript." [SO:ke]	1905600	\N	\N	sequence	3	SO	transcript_variant	non_coding_transcript_splice_region_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002088	"A transcript variant occurring within the splice region (1-3 bases of the exon or 3-8 bases of the intron) of a non coding transcript." [SO:ke]	3174027	\N	\N	sequence	5	SO	feature_variant	non_coding_transcript_splice_region_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002088	"A transcript variant occurring within the splice region (1-3 bases of the exon or 3-8 bases of the intron) of a non coding transcript." [SO:ke]	4385891	\N	\N	sequence	6	SO	structural_variant	non_coding_transcript_splice_region_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002088	"A transcript variant occurring within the splice region (1-3 bases of the exon or 3-8 bases of the intron) of a non coding transcript." [SO:ke]	5407507	\N	\N	sequence	7	SO	sequence_variant	non_coding_transcript_splice_region_variant
SO:0002089	\N	\N	"A UTR variant of exonic sequence of the 3' UTR." [SO:ke]	SO:0002089	"A UTR variant of exonic sequence of the 3' UTR." [SO:ke]	46949	\N	\N	sequence	0	SO	3_prime_UTR_exon_variant	3_prime_UTR_exon_variant
SO:0001624	SO:0002089	\N	"A UTR variant of the 3' UTR." [SO:ke]	SO:0002089	"A UTR variant of exonic sequence of the 3' UTR." [SO:ke]	491759	\N	\N	sequence	1	SO	3_prime_UTR_variant	3_prime_UTR_exon_variant
SO:0001622	SO:0001624	\N	"A transcript variant that is located within the UTR." [SO:ke]	SO:0002089	"A UTR variant of exonic sequence of the 3' UTR." [SO:ke]	1074437	\N	\N	sequence	2	SO	UTR_variant	3_prime_UTR_exon_variant
SO:0001791	SO:0001622	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0002089	"A UTR variant of exonic sequence of the 3' UTR." [SO:ke]	1905601	\N	\N	sequence	3	SO	exon_variant	3_prime_UTR_exon_variant
SO:0001968	SO:0001622	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0002089	"A UTR variant of exonic sequence of the 3' UTR." [SO:ke]	1905602	\N	\N	sequence	3	SO	coding_transcript_variant	3_prime_UTR_exon_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002089	"A UTR variant of exonic sequence of the 3' UTR." [SO:ke]	2930029	\N	\N	sequence	4	SO	transcript_variant	3_prime_UTR_exon_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002089	"A UTR variant of exonic sequence of the 3' UTR." [SO:ke]	2930030	\N	\N	sequence	4	SO	transcript_variant	3_prime_UTR_exon_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0002089	"A UTR variant of exonic sequence of the 3' UTR." [SO:ke]	4003048	\N	\N	sequence	5	SO	gene_variant	3_prime_UTR_exon_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002089	"A UTR variant of exonic sequence of the 3' UTR." [SO:ke]	4967189	\N	\N	sequence	6	SO	feature_variant	3_prime_UTR_exon_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002089	"A UTR variant of exonic sequence of the 3' UTR." [SO:ke]	5741678	\N	\N	sequence	7	SO	structural_variant	3_prime_UTR_exon_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002089	"A UTR variant of exonic sequence of the 3' UTR." [SO:ke]	6311329	\N	\N	sequence	8	SO	sequence_variant	3_prime_UTR_exon_variant
SO:0002090	\N	\N	"A UTR variant of intronic sequence of the 3' UTR." [SO:ke]	SO:0002090	"A UTR variant of intronic sequence of the 3' UTR." [SO:ke]	46950	\N	\N	sequence	0	SO	3_prime_UTR_intron_variant	3_prime_UTR_intron_variant
SO:0001624	SO:0002090	\N	"A UTR variant of the 3' UTR." [SO:ke]	SO:0002090	"A UTR variant of intronic sequence of the 3' UTR." [SO:ke]	491760	\N	\N	sequence	1	SO	3_prime_UTR_variant	3_prime_UTR_intron_variant
SO:0001969	SO:0002090	\N	"A transcript variant occurring within an intron of a coding transcript." [SO:ke]	SO:0002090	"A UTR variant of intronic sequence of the 3' UTR." [SO:ke]	491761	\N	\N	sequence	1	SO	coding_transcript_intron_variant	3_prime_UTR_intron_variant
SO:0001622	SO:0001624	\N	"A transcript variant that is located within the UTR." [SO:ke]	SO:0002090	"A UTR variant of intronic sequence of the 3' UTR." [SO:ke]	1074438	\N	\N	sequence	2	SO	UTR_variant	3_prime_UTR_intron_variant
SO:0001627	SO:0001969	\N	"A transcript variant occurring within an intron." [SO:ke]	SO:0002090	"A UTR variant of intronic sequence of the 3' UTR." [SO:ke]	1074439	\N	\N	sequence	2	SO	intron_variant	3_prime_UTR_intron_variant
SO:0001968	SO:0001969	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0002090	"A UTR variant of intronic sequence of the 3' UTR." [SO:ke]	1074440	\N	\N	sequence	2	SO	coding_transcript_variant	3_prime_UTR_intron_variant
SO:0001791	SO:0001622	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0002090	"A UTR variant of intronic sequence of the 3' UTR." [SO:ke]	1905603	\N	\N	sequence	3	SO	exon_variant	3_prime_UTR_intron_variant
SO:0001968	SO:0001622	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0002090	"A UTR variant of intronic sequence of the 3' UTR." [SO:ke]	1905604	\N	\N	sequence	3	SO	coding_transcript_variant	3_prime_UTR_intron_variant
SO:0001576	SO:0001627	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002090	"A UTR variant of intronic sequence of the 3' UTR." [SO:ke]	1905605	\N	\N	sequence	3	SO	transcript_variant	3_prime_UTR_intron_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002090	"A UTR variant of intronic sequence of the 3' UTR." [SO:ke]	2930032	\N	\N	sequence	4	SO	transcript_variant	3_prime_UTR_intron_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002090	"A UTR variant of intronic sequence of the 3' UTR." [SO:ke]	2930031	\N	\N	sequence	4	SO	transcript_variant	3_prime_UTR_intron_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0002090	"A UTR variant of intronic sequence of the 3' UTR." [SO:ke]	3174028	\N	\N	sequence	5	SO	gene_variant	3_prime_UTR_intron_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002090	"A UTR variant of intronic sequence of the 3' UTR." [SO:ke]	4385892	\N	\N	sequence	6	SO	feature_variant	3_prime_UTR_intron_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002090	"A UTR variant of intronic sequence of the 3' UTR." [SO:ke]	5407508	\N	\N	sequence	7	SO	structural_variant	3_prime_UTR_intron_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002090	"A UTR variant of intronic sequence of the 3' UTR." [SO:ke]	6146692	\N	\N	sequence	8	SO	sequence_variant	3_prime_UTR_intron_variant
SO:0002091	\N	\N	"A UTR variant of intronic sequence of the 5' UTR." [SO:ke]	SO:0002091	"A UTR variant of intronic sequence of the 5' UTR." [SO:ke]	46951	\N	\N	sequence	0	SO	5_prime_UTR_intron_variant	5_prime_UTR_intron_variant
SO:0001623	SO:0002091	\N	"A UTR variant of the 5' UTR." [SO:ke]	SO:0002091	"A UTR variant of intronic sequence of the 5' UTR." [SO:ke]	491762	\N	\N	sequence	1	SO	5_prime_UTR_variant	5_prime_UTR_intron_variant
SO:0001969	SO:0002091	\N	"A transcript variant occurring within an intron of a coding transcript." [SO:ke]	SO:0002091	"A UTR variant of intronic sequence of the 5' UTR." [SO:ke]	491763	\N	\N	sequence	1	SO	coding_transcript_intron_variant	5_prime_UTR_intron_variant
SO:0001622	SO:0001623	\N	"A transcript variant that is located within the UTR." [SO:ke]	SO:0002091	"A UTR variant of intronic sequence of the 5' UTR." [SO:ke]	1074441	\N	\N	sequence	2	SO	UTR_variant	5_prime_UTR_intron_variant
SO:0001627	SO:0001969	\N	"A transcript variant occurring within an intron." [SO:ke]	SO:0002091	"A UTR variant of intronic sequence of the 5' UTR." [SO:ke]	1074442	\N	\N	sequence	2	SO	intron_variant	5_prime_UTR_intron_variant
SO:0001968	SO:0001969	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0002091	"A UTR variant of intronic sequence of the 5' UTR." [SO:ke]	1074443	\N	\N	sequence	2	SO	coding_transcript_variant	5_prime_UTR_intron_variant
SO:0001791	SO:0001622	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0002091	"A UTR variant of intronic sequence of the 5' UTR." [SO:ke]	1905607	\N	\N	sequence	3	SO	exon_variant	5_prime_UTR_intron_variant
SO:0001968	SO:0001622	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0002091	"A UTR variant of intronic sequence of the 5' UTR." [SO:ke]	1905608	\N	\N	sequence	3	SO	coding_transcript_variant	5_prime_UTR_intron_variant
SO:0001576	SO:0001627	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002091	"A UTR variant of intronic sequence of the 5' UTR." [SO:ke]	1905609	\N	\N	sequence	3	SO	transcript_variant	5_prime_UTR_intron_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002091	"A UTR variant of intronic sequence of the 5' UTR." [SO:ke]	2930035	\N	\N	sequence	4	SO	transcript_variant	5_prime_UTR_intron_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002091	"A UTR variant of intronic sequence of the 5' UTR." [SO:ke]	2930034	\N	\N	sequence	4	SO	transcript_variant	5_prime_UTR_intron_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0002091	"A UTR variant of intronic sequence of the 5' UTR." [SO:ke]	3174029	\N	\N	sequence	5	SO	gene_variant	5_prime_UTR_intron_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002091	"A UTR variant of intronic sequence of the 5' UTR." [SO:ke]	4385893	\N	\N	sequence	6	SO	feature_variant	5_prime_UTR_intron_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002091	"A UTR variant of intronic sequence of the 5' UTR." [SO:ke]	5407509	\N	\N	sequence	7	SO	structural_variant	5_prime_UTR_intron_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002091	"A UTR variant of intronic sequence of the 5' UTR." [SO:ke]	6146693	\N	\N	sequence	8	SO	sequence_variant	5_prime_UTR_intron_variant
SO:0002092	\N	\N	"A UTR variant of exonic sequence of the 5' UTR." [SO:ke]	SO:0002092	"A UTR variant of exonic sequence of the 5' UTR." [SO:ke]	46952	\N	\N	sequence	0	SO	5_prime_UTR_exon_variant	5_prime_UTR_exon_variant
SO:0001623	SO:0002092	\N	"A UTR variant of the 5' UTR." [SO:ke]	SO:0002092	"A UTR variant of exonic sequence of the 5' UTR." [SO:ke]	491764	\N	\N	sequence	1	SO	5_prime_UTR_variant	5_prime_UTR_exon_variant
SO:0001622	SO:0001623	\N	"A transcript variant that is located within the UTR." [SO:ke]	SO:0002092	"A UTR variant of exonic sequence of the 5' UTR." [SO:ke]	1074444	\N	\N	sequence	2	SO	UTR_variant	5_prime_UTR_exon_variant
SO:0001791	SO:0001622	\N	"A sequence variant that changes exon sequence." [SO:ke]	SO:0002092	"A UTR variant of exonic sequence of the 5' UTR." [SO:ke]	1905611	\N	\N	sequence	3	SO	exon_variant	5_prime_UTR_exon_variant
SO:0001968	SO:0001622	\N	"A transcript variant of a protein coding gene." [SO:ke]	SO:0002092	"A UTR variant of exonic sequence of the 5' UTR." [SO:ke]	1905612	\N	\N	sequence	3	SO	coding_transcript_variant	5_prime_UTR_exon_variant
SO:0001576	SO:0001791	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002092	"A UTR variant of exonic sequence of the 5' UTR." [SO:ke]	2930037	\N	\N	sequence	4	SO	transcript_variant	5_prime_UTR_exon_variant
SO:0001576	SO:0001968	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002092	"A UTR variant of exonic sequence of the 5' UTR." [SO:ke]	2930038	\N	\N	sequence	4	SO	transcript_variant	5_prime_UTR_exon_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0002092	"A UTR variant of exonic sequence of the 5' UTR." [SO:ke]	4003051	\N	\N	sequence	5	SO	gene_variant	5_prime_UTR_exon_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002092	"A UTR variant of exonic sequence of the 5' UTR." [SO:ke]	4967192	\N	\N	sequence	6	SO	feature_variant	5_prime_UTR_exon_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002092	"A UTR variant of exonic sequence of the 5' UTR." [SO:ke]	5741681	\N	\N	sequence	7	SO	structural_variant	5_prime_UTR_exon_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002092	"A UTR variant of exonic sequence of the 5' UTR." [SO:ke]	6311330	\N	\N	sequence	8	SO	sequence_variant	5_prime_UTR_exon_variant
SO:0002093	\N	\N	"A variant that impacts the internal interactions of the resulting polypeptide structure." [SO:ke]	SO:0002093	"A variant that impacts the internal interactions of the resulting polypeptide structure." [SO:ke]	46953	\N	\N	sequence	0	SO	structural_interaction_variant	structural_interaction_variant
SO:0001599	SO:0002093	\N	"A sequence variant that changes the resulting polypeptide structure." [SO:ke]	SO:0002093	"A variant that impacts the internal interactions of the resulting polypeptide structure." [SO:ke]	491765	\N	\N	sequence	1	SO	3D_polypeptide_structure_variant	structural_interaction_variant
SO:0001539	SO:0001599	\N	"A sequence variant that affects the functioning of a translational product with respect to a reference sequence." [SO:ke]	SO:0002093	"A variant that impacts the internal interactions of the resulting polypeptide structure." [SO:ke]	1074445	\N	\N	sequence	2	SO	translational_product_function_variant	structural_interaction_variant
SO:0001536	SO:0001539	\N	"A sequence variant in which the function of a gene product is altered with respect to a reference." [SO:ke]	SO:0002093	"A variant that impacts the internal interactions of the resulting polypeptide structure." [SO:ke]	1905613	\N	\N	sequence	3	SO	functional_variant	structural_interaction_variant
SO:0001060	SO:0001536	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002093	"A variant that impacts the internal interactions of the resulting polypeptide structure." [SO:ke]	2930039	\N	\N	sequence	4	SO	sequence_variant	structural_interaction_variant
SO:0002094	\N	\N	"A genomic region at a non-allelic position where exchange of genetic material happens as a result of homologous recombination." []	SO:0002094	"A genomic region at a non-allelic position where exchange of genetic material happens as a result of homologous recombination." []	46954	\N	\N	sequence	0	SO	non_allelic_homologous_recombination_region	non_allelic_homologous_recombination_region
SO:0000339	SO:0002094	\N	"A region in a genome which promotes recombination." [SO:rd]	SO:0002094	"A genomic region at a non-allelic position where exchange of genetic material happens as a result of homologous recombination." []	491766	\N	\N	sequence	1	SO	recombination_hotspot	non_allelic_homologous_recombination_region
SO:0000298	SO:0000339	\N	"" []	SO:0002094	"A genomic region at a non-allelic position where exchange of genetic material happens as a result of homologous recombination." []	1074446	\N	\N	sequence	2	SO	recombination_feature	non_allelic_homologous_recombination_region
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002094	"A genomic region at a non-allelic position where exchange of genetic material happens as a result of homologous recombination." []	1905614	\N	SOFA	sequence	3	SO	biological_region	non_allelic_homologous_recombination_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002094	"A genomic region at a non-allelic position where exchange of genetic material happens as a result of homologous recombination." []	2930040	SOFA	SOFA	sequence	4	SO	region	non_allelic_homologous_recombination_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002094	"A genomic region at a non-allelic position where exchange of genetic material happens as a result of homologous recombination." []	4003052	SOFA	SOFA	sequence	5	SO	sequence_feature	non_allelic_homologous_recombination_region
SO:0002095	\N	\N	"A ncRNA, specific to the Cajal body, that has been demonstrated to function as a guide RNA in the site-specific synthesis of 2'-O-ribose-methylated nucleotides and pseudouridines in the RNA polymerase II-transcribed U1, U2, U4 and U5 spliceosomal small nuclear RNAs (snRNAs)." [PMC:126017, SO:nrs]	SO:0002095	"A ncRNA, specific to the Cajal body, that has been demonstrated to function as a guide RNA in the site-specific synthesis of 2'-O-ribose-methylated nucleotides and pseudouridines in the RNA polymerase II-transcribed U1, U2, U4 and U5 spliceosomal small nuclear RNAs (snRNAs)." [PMC:126017, SO:nrs]	46955	\N	\N	sequence	0	SO	scaRNA	scaRNA
SO:0000655	SO:0002095	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0002095	"A ncRNA, specific to the Cajal body, that has been demonstrated to function as a guide RNA in the site-specific synthesis of 2'-O-ribose-methylated nucleotides and pseudouridines in the RNA polymerase II-transcribed U1, U2, U4 and U5 spliceosomal small nuclear RNAs (snRNAs)." [PMC:126017, SO:nrs]	491767	\N	SOFA	sequence	1	SO	ncRNA	scaRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0002095	"A ncRNA, specific to the Cajal body, that has been demonstrated to function as a guide RNA in the site-specific synthesis of 2'-O-ribose-methylated nucleotides and pseudouridines in the RNA polymerase II-transcribed U1, U2, U4 and U5 spliceosomal small nuclear RNAs (snRNAs)." [PMC:126017, SO:nrs]	1074447	SOFA	SOFA	sequence	2	SO	mature_transcript	scaRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002095	"A ncRNA, specific to the Cajal body, that has been demonstrated to function as a guide RNA in the site-specific synthesis of 2'-O-ribose-methylated nucleotides and pseudouridines in the RNA polymerase II-transcribed U1, U2, U4 and U5 spliceosomal small nuclear RNAs (snRNAs)." [PMC:126017, SO:nrs]	1905615	SOFA	SOFA	sequence	3	SO	transcript	scaRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002095	"A ncRNA, specific to the Cajal body, that has been demonstrated to function as a guide RNA in the site-specific synthesis of 2'-O-ribose-methylated nucleotides and pseudouridines in the RNA polymerase II-transcribed U1, U2, U4 and U5 spliceosomal small nuclear RNAs (snRNAs)." [PMC:126017, SO:nrs]	2930041	SOFA	SOFA	sequence	4	SO	gene_member_region	scaRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002095	"A ncRNA, specific to the Cajal body, that has been demonstrated to function as a guide RNA in the site-specific synthesis of 2'-O-ribose-methylated nucleotides and pseudouridines in the RNA polymerase II-transcribed U1, U2, U4 and U5 spliceosomal small nuclear RNAs (snRNAs)." [PMC:126017, SO:nrs]	4003053	SOFA	SOFA	sequence	5	SO	biological_region	scaRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002095	"A ncRNA, specific to the Cajal body, that has been demonstrated to function as a guide RNA in the site-specific synthesis of 2'-O-ribose-methylated nucleotides and pseudouridines in the RNA polymerase II-transcribed U1, U2, U4 and U5 spliceosomal small nuclear RNAs (snRNAs)." [PMC:126017, SO:nrs]	4967193	SOFA	SOFA	sequence	6	SO	region	scaRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002095	"A ncRNA, specific to the Cajal body, that has been demonstrated to function as a guide RNA in the site-specific synthesis of 2'-O-ribose-methylated nucleotides and pseudouridines in the RNA polymerase II-transcribed U1, U2, U4 and U5 spliceosomal small nuclear RNAs (snRNAs)." [PMC:126017, SO:nrs]	5741682	SOFA	SOFA	sequence	7	SO	sequence_feature	scaRNA
SO:0002096	\N	\N	"A variation that expands or contracts a tandem repeat with regard to a reference." [SO:ke]	SO:0002096	"A variation that expands or contracts a tandem repeat with regard to a reference." [SO:ke]	46956	\N	\N	sequence	0	SO	short_tandem_repeat_variation	short_tandem_repeat_variation
SO:0000248	SO:0002096	\N	"A kind of kind of sequence alteration where the copies of a region present varies across a population." [SO:ke]	SO:0002096	"A variation that expands or contracts a tandem repeat with regard to a reference." [SO:ke]	491768	\N	\N	sequence	1	SO	sequence_length_alteration	short_tandem_repeat_variation
SO:0001059	SO:0000248	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0002096	"A variation that expands or contracts a tandem repeat with regard to a reference." [SO:ke]	1074448	\N	SOFA	sequence	2	SO	sequence_alteration	short_tandem_repeat_variation
SO:0002072	SO:0001059	\N	"" []	SO:0002096	"A variation that expands or contracts a tandem repeat with regard to a reference." [SO:ke]	1905616	SOFA	\N	sequence	3	SO	sequence_comparison	short_tandem_repeat_variation
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002096	"A variation that expands or contracts a tandem repeat with regard to a reference." [SO:ke]	2930042	\N	SOFA	sequence	4	SO	sequence_feature	short_tandem_repeat_variation
SO:0002097	\N	\N	"A pseudogene derived from a vertebrate immune system gene." [SO:ke]	SO:0002097	"A pseudogene derived from a vertebrate immune system gene." [SO:ke]	46957	\N	\N	sequence	0	SO	vertebrate_immune_system_pseudogene	vertebrate_immune_system_pseudogene
SO:0000336	SO:0002097	\N	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	SO:0002097	"A pseudogene derived from a vertebrate immune system gene." [SO:ke]	491769	\N	SOFA	sequence	1	SO	pseudogene	vertebrate_immune_system_pseudogene
SO:0001411	SO:0000336	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002097	"A pseudogene derived from a vertebrate immune system gene." [SO:ke]	1074449	SOFA	SOFA	sequence	2	SO	biological_region	vertebrate_immune_system_pseudogene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002097	"A pseudogene derived from a vertebrate immune system gene." [SO:ke]	1905617	SOFA	SOFA	sequence	3	SO	region	vertebrate_immune_system_pseudogene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002097	"A pseudogene derived from a vertebrate immune system gene." [SO:ke]	2930043	SOFA	SOFA	sequence	4	SO	sequence_feature	vertebrate_immune_system_pseudogene
SO:0002098	\N	\N	"A pseudogene derived from an immunoglobulin gene." [SO:ke]	SO:0002098	"A pseudogene derived from an immunoglobulin gene." [SO:ke]	46958	\N	\N	sequence	0	SO	immunoglobulin_pseudogene	immunoglobulin_pseudogene
SO:0002097	SO:0002098	\N	"A pseudogene derived from a vertebrate immune system gene." [SO:ke]	SO:0002098	"A pseudogene derived from an immunoglobulin gene." [SO:ke]	491770	\N	\N	sequence	1	SO	vertebrate_immune_system_pseudogene	immunoglobulin_pseudogene
SO:0000336	SO:0002097	\N	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	SO:0002098	"A pseudogene derived from an immunoglobulin gene." [SO:ke]	1074450	\N	SOFA	sequence	2	SO	pseudogene	immunoglobulin_pseudogene
SO:0001411	SO:0000336	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002098	"A pseudogene derived from an immunoglobulin gene." [SO:ke]	1905618	SOFA	SOFA	sequence	3	SO	biological_region	immunoglobulin_pseudogene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002098	"A pseudogene derived from an immunoglobulin gene." [SO:ke]	2930044	SOFA	SOFA	sequence	4	SO	region	immunoglobulin_pseudogene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002098	"A pseudogene derived from an immunoglobulin gene." [SO:ke]	4003054	SOFA	SOFA	sequence	5	SO	sequence_feature	immunoglobulin_pseudogene
SO:0002099	\N	\N	"A pseudogene derived from a T-cell receptor gene." [SO:ke]	SO:0002099	"A pseudogene derived from a T-cell receptor gene." [SO:ke]	46959	\N	\N	sequence	0	SO	T_cell_receptor_pseudogene	T_cell_receptor_pseudogene
SO:0002097	SO:0002099	\N	"A pseudogene derived from a vertebrate immune system gene." [SO:ke]	SO:0002099	"A pseudogene derived from a T-cell receptor gene." [SO:ke]	491771	\N	\N	sequence	1	SO	vertebrate_immune_system_pseudogene	T_cell_receptor_pseudogene
SO:0000336	SO:0002097	\N	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	SO:0002099	"A pseudogene derived from a T-cell receptor gene." [SO:ke]	1074451	\N	SOFA	sequence	2	SO	pseudogene	T_cell_receptor_pseudogene
SO:0001411	SO:0000336	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002099	"A pseudogene derived from a T-cell receptor gene." [SO:ke]	1905619	SOFA	SOFA	sequence	3	SO	biological_region	T_cell_receptor_pseudogene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002099	"A pseudogene derived from a T-cell receptor gene." [SO:ke]	2930045	SOFA	SOFA	sequence	4	SO	region	T_cell_receptor_pseudogene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002099	"A pseudogene derived from a T-cell receptor gene." [SO:ke]	4003055	SOFA	SOFA	sequence	5	SO	sequence_feature	T_cell_receptor_pseudogene
SO:0002100	\N	\N	"A pseudogenic constant region of an immunoglobulin gene which closely resembles a known functional Imunoglobulin constant gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	SO:0002100	"A pseudogenic constant region of an immunoglobulin gene which closely resembles a known functional Imunoglobulin constant gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	46960	\N	\N	sequence	0	SO	IG_C_pseudogene	IG_C_pseudogene
SO:0002098	SO:0002100	\N	"A pseudogene derived from an immunoglobulin gene." [SO:ke]	SO:0002100	"A pseudogenic constant region of an immunoglobulin gene which closely resembles a known functional Imunoglobulin constant gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	491772	\N	\N	sequence	1	SO	immunoglobulin_pseudogene	IG_C_pseudogene
SO:0002097	SO:0002098	\N	"A pseudogene derived from a vertebrate immune system gene." [SO:ke]	SO:0002100	"A pseudogenic constant region of an immunoglobulin gene which closely resembles a known functional Imunoglobulin constant gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	1074452	\N	\N	sequence	2	SO	vertebrate_immune_system_pseudogene	IG_C_pseudogene
SO:0000336	SO:0002097	\N	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	SO:0002100	"A pseudogenic constant region of an immunoglobulin gene which closely resembles a known functional Imunoglobulin constant gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	1905620	\N	SOFA	sequence	3	SO	pseudogene	IG_C_pseudogene
SO:0001411	SO:0000336	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002100	"A pseudogenic constant region of an immunoglobulin gene which closely resembles a known functional Imunoglobulin constant gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	2930046	SOFA	SOFA	sequence	4	SO	biological_region	IG_C_pseudogene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002100	"A pseudogenic constant region of an immunoglobulin gene which closely resembles a known functional Imunoglobulin constant gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	4003056	SOFA	SOFA	sequence	5	SO	region	IG_C_pseudogene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002100	"A pseudogenic constant region of an immunoglobulin gene which closely resembles a known functional Imunoglobulin constant gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	4967194	SOFA	SOFA	sequence	6	SO	sequence_feature	IG_C_pseudogene
SO:0002101	\N	\N	"A pseudogenic joining region which closely resembles a known functional imunoglobulin joining gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the joining region of the variable domain of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	SO:0002101	"A pseudogenic joining region which closely resembles a known functional imunoglobulin joining gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the joining region of the variable domain of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	46961	\N	\N	sequence	0	SO	IG_J_pseudogene	IG_J_pseudogene
SO:0002098	SO:0002101	\N	"A pseudogene derived from an immunoglobulin gene." [SO:ke]	SO:0002101	"A pseudogenic joining region which closely resembles a known functional imunoglobulin joining gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the joining region of the variable domain of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	491773	\N	\N	sequence	1	SO	immunoglobulin_pseudogene	IG_J_pseudogene
SO:0002097	SO:0002098	\N	"A pseudogene derived from a vertebrate immune system gene." [SO:ke]	SO:0002101	"A pseudogenic joining region which closely resembles a known functional imunoglobulin joining gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the joining region of the variable domain of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	1074453	\N	\N	sequence	2	SO	vertebrate_immune_system_pseudogene	IG_J_pseudogene
SO:0000336	SO:0002097	\N	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	SO:0002101	"A pseudogenic joining region which closely resembles a known functional imunoglobulin joining gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the joining region of the variable domain of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	1905621	\N	SOFA	sequence	3	SO	pseudogene	IG_J_pseudogene
SO:0001411	SO:0000336	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002101	"A pseudogenic joining region which closely resembles a known functional imunoglobulin joining gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the joining region of the variable domain of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	2930047	SOFA	SOFA	sequence	4	SO	biological_region	IG_J_pseudogene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002101	"A pseudogenic joining region which closely resembles a known functional imunoglobulin joining gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the joining region of the variable domain of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	4003057	SOFA	SOFA	sequence	5	SO	region	IG_J_pseudogene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002101	"A pseudogenic joining region which closely resembles a known functional imunoglobulin joining gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the joining region of the variable domain of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	4967195	SOFA	SOFA	sequence	6	SO	sequence_feature	IG_J_pseudogene
SO:0002102	\N	\N	"A pseudogenic variable region which closely resembles a known functional imunoglobulin variable gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the variable region of  an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	SO:0002102	"A pseudogenic variable region which closely resembles a known functional imunoglobulin variable gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the variable region of  an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	46962	\N	\N	sequence	0	SO	IG_V_pseudogene	IG_V_pseudogene
SO:0002098	SO:0002102	\N	"A pseudogene derived from an immunoglobulin gene." [SO:ke]	SO:0002102	"A pseudogenic variable region which closely resembles a known functional imunoglobulin variable gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the variable region of  an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	491774	\N	\N	sequence	1	SO	immunoglobulin_pseudogene	IG_V_pseudogene
SO:0002097	SO:0002098	\N	"A pseudogene derived from a vertebrate immune system gene." [SO:ke]	SO:0002102	"A pseudogenic variable region which closely resembles a known functional imunoglobulin variable gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the variable region of  an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	1074454	\N	\N	sequence	2	SO	vertebrate_immune_system_pseudogene	IG_V_pseudogene
SO:0000336	SO:0002097	\N	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	SO:0002102	"A pseudogenic variable region which closely resembles a known functional imunoglobulin variable gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the variable region of  an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	1905622	\N	SOFA	sequence	3	SO	pseudogene	IG_V_pseudogene
SO:0001411	SO:0000336	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002102	"A pseudogenic variable region which closely resembles a known functional imunoglobulin variable gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the variable region of  an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	2930048	SOFA	SOFA	sequence	4	SO	biological_region	IG_V_pseudogene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002102	"A pseudogenic variable region which closely resembles a known functional imunoglobulin variable gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the variable region of  an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	4003058	SOFA	SOFA	sequence	5	SO	region	IG_V_pseudogene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002102	"A pseudogenic variable region which closely resembles a known functional imunoglobulin variable gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the variable region of  an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	4967196	SOFA	SOFA	sequence	6	SO	sequence_feature	IG_V_pseudogene
SO:0002103	\N	\N	"A pseudogenic variable region which closely resembles a known functional T receptor variable gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the variable region of  an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	SO:0002103	"A pseudogenic variable region which closely resembles a known functional T receptor variable gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the variable region of  an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	46963	\N	\N	sequence	0	SO	TR_V_pseudogene	TR_V_pseudogene
SO:0002099	SO:0002103	\N	"A pseudogene derived from a T-cell receptor gene." [SO:ke]	SO:0002103	"A pseudogenic variable region which closely resembles a known functional T receptor variable gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the variable region of  an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	491775	\N	\N	sequence	1	SO	T_cell_receptor_pseudogene	TR_V_pseudogene
SO:0002097	SO:0002099	\N	"A pseudogene derived from a vertebrate immune system gene." [SO:ke]	SO:0002103	"A pseudogenic variable region which closely resembles a known functional T receptor variable gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the variable region of  an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	1074455	\N	\N	sequence	2	SO	vertebrate_immune_system_pseudogene	TR_V_pseudogene
SO:0000336	SO:0002097	\N	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	SO:0002103	"A pseudogenic variable region which closely resembles a known functional T receptor variable gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the variable region of  an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	1905623	\N	SOFA	sequence	3	SO	pseudogene	TR_V_pseudogene
SO:0001411	SO:0000336	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002103	"A pseudogenic variable region which closely resembles a known functional T receptor variable gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the variable region of  an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	2930049	SOFA	SOFA	sequence	4	SO	biological_region	TR_V_pseudogene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002103	"A pseudogenic variable region which closely resembles a known functional T receptor variable gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the variable region of  an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	4003059	SOFA	SOFA	sequence	5	SO	region	TR_V_pseudogene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002103	"A pseudogenic variable region which closely resembles a known functional T receptor variable gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the variable region of  an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	4967197	SOFA	SOFA	sequence	6	SO	sequence_feature	TR_V_pseudogene
SO:0002104	\N	\N	"A pseudogenic joining region which closely resembles a known functional T receptor (TR) joining gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the joining region of the variable domain of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	SO:0002104	"A pseudogenic joining region which closely resembles a known functional T receptor (TR) joining gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the joining region of the variable domain of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	46964	\N	\N	sequence	0	SO	TR_J_pseudogene	TR_J_pseudogene
SO:0002099	SO:0002104	\N	"A pseudogene derived from a T-cell receptor gene." [SO:ke]	SO:0002104	"A pseudogenic joining region which closely resembles a known functional T receptor (TR) joining gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the joining region of the variable domain of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	491776	\N	\N	sequence	1	SO	T_cell_receptor_pseudogene	TR_J_pseudogene
SO:0002097	SO:0002099	\N	"A pseudogene derived from a vertebrate immune system gene." [SO:ke]	SO:0002104	"A pseudogenic joining region which closely resembles a known functional T receptor (TR) joining gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the joining region of the variable domain of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	1074456	\N	\N	sequence	2	SO	vertebrate_immune_system_pseudogene	TR_J_pseudogene
SO:0000336	SO:0002097	\N	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	SO:0002104	"A pseudogenic joining region which closely resembles a known functional T receptor (TR) joining gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the joining region of the variable domain of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	1905624	\N	SOFA	sequence	3	SO	pseudogene	TR_J_pseudogene
SO:0001411	SO:0000336	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002104	"A pseudogenic joining region which closely resembles a known functional T receptor (TR) joining gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the joining region of the variable domain of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	2930050	SOFA	SOFA	sequence	4	SO	biological_region	TR_J_pseudogene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002104	"A pseudogenic joining region which closely resembles a known functional T receptor (TR) joining gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the joining region of the variable domain of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	4003060	SOFA	SOFA	sequence	5	SO	region	TR_J_pseudogene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002104	"A pseudogenic joining region which closely resembles a known functional T receptor (TR) joining gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the joining region of the variable domain of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	4967198	SOFA	SOFA	sequence	6	SO	sequence_feature	TR_J_pseudogene
SO:0002105	\N	\N	"A processed pseudogene where there is evidence, (mass spec data) suggesting that it is also translated." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002105	"A processed pseudogene where there is evidence, (mass spec data) suggesting that it is also translated." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	46965	\N	\N	sequence	0	SO	translated_processed_pseudogene	translated_processed_pseudogene
SO:0000043	SO:0002105	\N	"A pseudogene created via retrotranposition of the mRNA of a functional protein-coding parent gene followed by accumulation of deleterious mutations lacking introns and promoters, often including a polyA tail." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002105	"A processed pseudogene where there is evidence, (mass spec data) suggesting that it is also translated." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	491777	\N	\N	sequence	1	SO	processed_pseudogene	translated_processed_pseudogene
SO:0000336	SO:0000043	\N	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	SO:0002105	"A processed pseudogene where there is evidence, (mass spec data) suggesting that it is also translated." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1074457	\N	SOFA	sequence	2	SO	pseudogene	translated_processed_pseudogene
SO:0001411	SO:0000336	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002105	"A processed pseudogene where there is evidence, (mass spec data) suggesting that it is also translated." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1905625	SOFA	SOFA	sequence	3	SO	biological_region	translated_processed_pseudogene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002105	"A processed pseudogene where there is evidence, (mass spec data) suggesting that it is also translated." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	2930051	SOFA	SOFA	sequence	4	SO	region	translated_processed_pseudogene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002105	"A processed pseudogene where there is evidence, (mass spec data) suggesting that it is also translated." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4003061	SOFA	SOFA	sequence	5	SO	sequence_feature	translated_processed_pseudogene
SO:0002106	\N	\N	"A non-processed pseudogene where there is evidence, (mass spec data) suggesting that it is also translated." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002106	"A non-processed pseudogene where there is evidence, (mass spec data) suggesting that it is also translated." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	46966	\N	\N	sequence	0	SO	translated_unprocessed_pseudogene	translated_unprocessed_pseudogene
SO:0001760	SO:0002106	\N	"A pseudogene that arose from a means other than retrotransposition. A pseudogene created via genomic duplication of a functional protein-coding parent gene followed by accumulation of deleterious mutations." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, SO:ke]	SO:0002106	"A non-processed pseudogene where there is evidence, (mass spec data) suggesting that it is also translated." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	491778	\N	\N	sequence	1	SO	non_processed_pseudogene	translated_unprocessed_pseudogene
SO:0000336	SO:0001760	\N	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	SO:0002106	"A non-processed pseudogene where there is evidence, (mass spec data) suggesting that it is also translated." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1074458	\N	SOFA	sequence	2	SO	pseudogene	translated_unprocessed_pseudogene
SO:0001411	SO:0000336	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002106	"A non-processed pseudogene where there is evidence, (mass spec data) suggesting that it is also translated." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1905626	SOFA	SOFA	sequence	3	SO	biological_region	translated_unprocessed_pseudogene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002106	"A non-processed pseudogene where there is evidence, (mass spec data) suggesting that it is also translated." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	2930052	SOFA	SOFA	sequence	4	SO	region	translated_unprocessed_pseudogene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002106	"A non-processed pseudogene where there is evidence, (mass spec data) suggesting that it is also translated." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4003062	SOFA	SOFA	sequence	5	SO	sequence_feature	translated_unprocessed_pseudogene
SO:0002107	\N	\N	"A unprocessed pseudogene supported by locus-specific evidence of transcription." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002107	"A unprocessed pseudogene supported by locus-specific evidence of transcription." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	46967	\N	\N	sequence	0	SO	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene
SO:0001760	SO:0002107	\N	"A pseudogene that arose from a means other than retrotransposition. A pseudogene created via genomic duplication of a functional protein-coding parent gene followed by accumulation of deleterious mutations." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, SO:ke]	SO:0002107	"A unprocessed pseudogene supported by locus-specific evidence of transcription." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	491779	\N	\N	sequence	1	SO	non_processed_pseudogene	transcribed_unprocessed_pseudogene
SO:0000336	SO:0001760	\N	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	SO:0002107	"A unprocessed pseudogene supported by locus-specific evidence of transcription." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1074459	\N	SOFA	sequence	2	SO	pseudogene	transcribed_unprocessed_pseudogene
SO:0001411	SO:0000336	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002107	"A unprocessed pseudogene supported by locus-specific evidence of transcription." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1905627	SOFA	SOFA	sequence	3	SO	biological_region	transcribed_unprocessed_pseudogene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002107	"A unprocessed pseudogene supported by locus-specific evidence of transcription." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	2930053	SOFA	SOFA	sequence	4	SO	region	transcribed_unprocessed_pseudogene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002107	"A unprocessed pseudogene supported by locus-specific evidence of transcription." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4003063	SOFA	SOFA	sequence	5	SO	sequence_feature	transcribed_unprocessed_pseudogene
SO:0002108	\N	\N	"A species specific unprocessed pseudogene without a parent gene, as it has an active orthologue in another species." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002108	"A species specific unprocessed pseudogene without a parent gene, as it has an active orthologue in another species." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	46968	\N	\N	sequence	0	SO	transcribed_unitary_pseudogene	transcribed_unitary_pseudogene
SO:0001759	SO:0002108	\N	"A pseudogene, deactivated from original state by mutation, fixed in a population,where the ortholog in a reference species such as mouse remains functional." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, http://en.wikipedia.org/wiki/Pseudogene, SO:ke]	SO:0002108	"A species specific unprocessed pseudogene without a parent gene, as it has an active orthologue in another species." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	491780	\N	\N	sequence	1	SO	unitary_pseudogene	transcribed_unitary_pseudogene
SO:0001760	SO:0001759	\N	"A pseudogene that arose from a means other than retrotransposition. A pseudogene created via genomic duplication of a functional protein-coding parent gene followed by accumulation of deleterious mutations." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, SO:ke]	SO:0002108	"A species specific unprocessed pseudogene without a parent gene, as it has an active orthologue in another species." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1074460	\N	\N	sequence	2	SO	non_processed_pseudogene	transcribed_unitary_pseudogene
SO:0000336	SO:0001760	\N	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	SO:0002108	"A species specific unprocessed pseudogene without a parent gene, as it has an active orthologue in another species." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1905628	\N	SOFA	sequence	3	SO	pseudogene	transcribed_unitary_pseudogene
SO:0001411	SO:0000336	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002108	"A species specific unprocessed pseudogene without a parent gene, as it has an active orthologue in another species." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	2930054	SOFA	SOFA	sequence	4	SO	biological_region	transcribed_unitary_pseudogene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002108	"A species specific unprocessed pseudogene without a parent gene, as it has an active orthologue in another species." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4003064	SOFA	SOFA	sequence	5	SO	region	transcribed_unitary_pseudogene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002108	"A species specific unprocessed pseudogene without a parent gene, as it has an active orthologue in another species." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4967199	SOFA	SOFA	sequence	6	SO	sequence_feature	transcribed_unitary_pseudogene
SO:0002109	\N	\N	"A processed_pseudogene overlapped by locus-specific evidence of transcription." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002109	"A processed_pseudogene overlapped by locus-specific evidence of transcription." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	46969	\N	\N	sequence	0	SO	transcribed_processed_pseudogene	transcribed_processed_pseudogene
SO:0000043	SO:0002109	\N	"A pseudogene created via retrotranposition of the mRNA of a functional protein-coding parent gene followed by accumulation of deleterious mutations lacking introns and promoters, often including a polyA tail." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002109	"A processed_pseudogene overlapped by locus-specific evidence of transcription." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	491781	\N	\N	sequence	1	SO	processed_pseudogene	transcribed_processed_pseudogene
SO:0000336	SO:0000043	\N	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	SO:0002109	"A processed_pseudogene overlapped by locus-specific evidence of transcription." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1074461	\N	SOFA	sequence	2	SO	pseudogene	transcribed_processed_pseudogene
SO:0001411	SO:0000336	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002109	"A processed_pseudogene overlapped by locus-specific evidence of transcription." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1905629	SOFA	SOFA	sequence	3	SO	biological_region	transcribed_processed_pseudogene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002109	"A processed_pseudogene overlapped by locus-specific evidence of transcription." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	2930055	SOFA	SOFA	sequence	4	SO	region	transcribed_processed_pseudogene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002109	"A processed_pseudogene overlapped by locus-specific evidence of transcription." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4003065	SOFA	SOFA	sequence	5	SO	sequence_feature	transcribed_processed_pseudogene
SO:0002110	\N	\N	"A polymorphic  pseudogene in the reference genome, containing a retained intron,  known to be intact in the genomes of other individuals of the same species. The annotation process has confirmed that the pseudogenisation event is not a genomic sequencing error." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002110	"A polymorphic  pseudogene in the reference genome, containing a retained intron,  known to be intact in the genomes of other individuals of the same species. The annotation process has confirmed that the pseudogenisation event is not a genomic sequencing error." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	46970	\N	\N	sequence	0	SO	polymorphic_pseudogene_with_retained_intron	polymorphic_pseudogene_with_retained_intron
SO:0001841	SO:0002110	\N	"A pseudogene in the reference genome, though known to be intact in the genomes of other individuals of the same species. The annotation process has confirmed that the pseudogenisation event is not a genomic sequencing error." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, JAX:hd]	SO:0002110	"A polymorphic  pseudogene in the reference genome, containing a retained intron,  known to be intact in the genomes of other individuals of the same species. The annotation process has confirmed that the pseudogenisation event is not a genomic sequencing error." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	491782	\N	\N	sequence	1	SO	polymorphic_pseudogene	polymorphic_pseudogene_with_retained_intron
SO:0000336	SO:0001841	\N	"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\"normal\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\"normal\\" paralog)." [http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html]	SO:0002110	"A polymorphic  pseudogene in the reference genome, containing a retained intron,  known to be intact in the genomes of other individuals of the same species. The annotation process has confirmed that the pseudogenisation event is not a genomic sequencing error." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1074462	\N	SOFA	sequence	2	SO	pseudogene	polymorphic_pseudogene_with_retained_intron
SO:0001411	SO:0000336	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002110	"A polymorphic  pseudogene in the reference genome, containing a retained intron,  known to be intact in the genomes of other individuals of the same species. The annotation process has confirmed that the pseudogenisation event is not a genomic sequencing error." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1905630	SOFA	SOFA	sequence	3	SO	biological_region	polymorphic_pseudogene_with_retained_intron
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002110	"A polymorphic  pseudogene in the reference genome, containing a retained intron,  known to be intact in the genomes of other individuals of the same species. The annotation process has confirmed that the pseudogenisation event is not a genomic sequencing error." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	2930056	SOFA	SOFA	sequence	4	SO	region	polymorphic_pseudogene_with_retained_intron
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002110	"A polymorphic  pseudogene in the reference genome, containing a retained intron,  known to be intact in the genomes of other individuals of the same species. The annotation process has confirmed that the pseudogenisation event is not a genomic sequencing error." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4003066	SOFA	SOFA	sequence	5	SO	sequence_feature	polymorphic_pseudogene_with_retained_intron
SO:0002111	\N	\N	"A processed_transcript supported by EST and/or mRNA evidence that aligns unambiguously to a pseudogene locus (i.e. alignment to the pseudogene locus clearly better than alignment to parent locus)." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002111	"A processed_transcript supported by EST and/or mRNA evidence that aligns unambiguously to a pseudogene locus (i.e. alignment to the pseudogene locus clearly better than alignment to parent locus)." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	46971	\N	\N	sequence	0	SO	pseudogene_processed_transcript	pseudogene_processed_transcript
SO:0001503	SO:0002111	\N	"A transcript for which no open reading frame has been identified and for which no other function has been determined." [MGI:hdeen]	SO:0002111	"A processed_transcript supported by EST and/or mRNA evidence that aligns unambiguously to a pseudogene locus (i.e. alignment to the pseudogene locus clearly better than alignment to parent locus)." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	491783	\N	\N	sequence	1	SO	processed_transcript	pseudogene_processed_transcript
SO:0000673	SO:0001503	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002111	"A processed_transcript supported by EST and/or mRNA evidence that aligns unambiguously to a pseudogene locus (i.e. alignment to the pseudogene locus clearly better than alignment to parent locus)." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1074463	\N	SOFA	sequence	2	SO	transcript	pseudogene_processed_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002111	"A processed_transcript supported by EST and/or mRNA evidence that aligns unambiguously to a pseudogene locus (i.e. alignment to the pseudogene locus clearly better than alignment to parent locus)." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1905631	SOFA	SOFA	sequence	3	SO	gene_member_region	pseudogene_processed_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002111	"A processed_transcript supported by EST and/or mRNA evidence that aligns unambiguously to a pseudogene locus (i.e. alignment to the pseudogene locus clearly better than alignment to parent locus)." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	2930057	SOFA	SOFA	sequence	4	SO	biological_region	pseudogene_processed_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002111	"A processed_transcript supported by EST and/or mRNA evidence that aligns unambiguously to a pseudogene locus (i.e. alignment to the pseudogene locus clearly better than alignment to parent locus)." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4003067	SOFA	SOFA	sequence	5	SO	region	pseudogene_processed_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002111	"A processed_transcript supported by EST and/or mRNA evidence that aligns unambiguously to a pseudogene locus (i.e. alignment to the pseudogene locus clearly better than alignment to parent locus)." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4967200	SOFA	SOFA	sequence	6	SO	sequence_feature	pseudogene_processed_transcript
SO:0002112	\N	\N	"A protein coding transcript containing a retained intron." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002112	"A protein coding transcript containing a retained intron." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	46972	\N	\N	sequence	0	SO	coding_transcript_with_retained_intron	coding_transcript_with_retained_intron
SO:0000120	SO:0002112	\N	"A primary transcript that, at least in part, encodes one or more proteins." [SO:ke]	SO:0002112	"A protein coding transcript containing a retained intron." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	491784	\N	SOFA	sequence	1	SO	protein_coding_primary_transcript	coding_transcript_with_retained_intron
SO:0000185	SO:0000120	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0002112	"A protein coding transcript containing a retained intron." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1074464	SOFA	SOFA	sequence	2	SO	primary_transcript	coding_transcript_with_retained_intron
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002112	"A protein coding transcript containing a retained intron." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1905632	SOFA	SOFA	sequence	3	SO	transcript	coding_transcript_with_retained_intron
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002112	"A protein coding transcript containing a retained intron." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	2930058	SOFA	SOFA	sequence	4	SO	gene_member_region	coding_transcript_with_retained_intron
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002112	"A protein coding transcript containing a retained intron." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4003068	SOFA	SOFA	sequence	5	SO	biological_region	coding_transcript_with_retained_intron
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002112	"A protein coding transcript containing a retained intron." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4967201	SOFA	SOFA	sequence	6	SO	region	coding_transcript_with_retained_intron
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002112	"A protein coding transcript containing a retained intron." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	5741683	SOFA	SOFA	sequence	7	SO	sequence_feature	coding_transcript_with_retained_intron
SO:0002113	\N	\N	"A lncRNA transcript containing a retained intron." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002113	"A lncRNA transcript containing a retained intron." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	46973	\N	\N	sequence	0	SO	lncRNA_with_retained_intron	lncRNA_with_retained_intron
SO:0002035	SO:0002113	\N	"A primary transcript encoding a  lncRNA." [SO:ke]	SO:0002113	"A lncRNA transcript containing a retained intron." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	491785	\N	\N	sequence	1	SO	lncRNA_primary_transcript	lncRNA_with_retained_intron
SO:0000483	SO:0002035	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0002113	"A lncRNA transcript containing a retained intron." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1074465	\N	SOFA	sequence	2	SO	nc_primary_transcript	lncRNA_with_retained_intron
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0002113	"A lncRNA transcript containing a retained intron." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1905633	SOFA	SOFA	sequence	3	SO	primary_transcript	lncRNA_with_retained_intron
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002113	"A lncRNA transcript containing a retained intron." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	2930059	SOFA	SOFA	sequence	4	SO	transcript	lncRNA_with_retained_intron
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002113	"A lncRNA transcript containing a retained intron." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4003069	SOFA	SOFA	sequence	5	SO	gene_member_region	lncRNA_with_retained_intron
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002113	"A lncRNA transcript containing a retained intron." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4967202	SOFA	SOFA	sequence	6	SO	biological_region	lncRNA_with_retained_intron
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002113	"A lncRNA transcript containing a retained intron." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	5741684	SOFA	SOFA	sequence	7	SO	region	lncRNA_with_retained_intron
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002113	"A lncRNA transcript containing a retained intron." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	6311331	SOFA	SOFA	sequence	8	SO	sequence_feature	lncRNA_with_retained_intron
SO:0002114	\N	\N	"A protein coding transcript that contains a CDS but has one or more splice junctions >50bp downstream of stop codon, making it susceptible to nonsense mediated decay." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002114	"A protein coding transcript that contains a CDS but has one or more splice junctions >50bp downstream of stop codon, making it susceptible to nonsense mediated decay." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	46974	\N	\N	sequence	0	SO	NMD_transcript	NMD_transcript
SO:0000120	SO:0002114	\N	"A primary transcript that, at least in part, encodes one or more proteins." [SO:ke]	SO:0002114	"A protein coding transcript that contains a CDS but has one or more splice junctions >50bp downstream of stop codon, making it susceptible to nonsense mediated decay." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	491786	\N	SOFA	sequence	1	SO	protein_coding_primary_transcript	NMD_transcript
SO:0000185	SO:0000120	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0002114	"A protein coding transcript that contains a CDS but has one or more splice junctions >50bp downstream of stop codon, making it susceptible to nonsense mediated decay." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1074466	SOFA	SOFA	sequence	2	SO	primary_transcript	NMD_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002114	"A protein coding transcript that contains a CDS but has one or more splice junctions >50bp downstream of stop codon, making it susceptible to nonsense mediated decay." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1905634	SOFA	SOFA	sequence	3	SO	transcript	NMD_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002114	"A protein coding transcript that contains a CDS but has one or more splice junctions >50bp downstream of stop codon, making it susceptible to nonsense mediated decay." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	2930060	SOFA	SOFA	sequence	4	SO	gene_member_region	NMD_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002114	"A protein coding transcript that contains a CDS but has one or more splice junctions >50bp downstream of stop codon, making it susceptible to nonsense mediated decay." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4003070	SOFA	SOFA	sequence	5	SO	biological_region	NMD_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002114	"A protein coding transcript that contains a CDS but has one or more splice junctions >50bp downstream of stop codon, making it susceptible to nonsense mediated decay." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4967203	SOFA	SOFA	sequence	6	SO	region	NMD_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002114	"A protein coding transcript that contains a CDS but has one or more splice junctions >50bp downstream of stop codon, making it susceptible to nonsense mediated decay." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	5741685	SOFA	SOFA	sequence	7	SO	sequence_feature	NMD_transcript
SO:0002115	\N	\N	"A transcript supported by EST and/or mRNA evidence that aligns unambiguously to the pseudogene locus; has retained intronic sequence compared to a reference transcript sequence." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002115	"A transcript supported by EST and/or mRNA evidence that aligns unambiguously to the pseudogene locus; has retained intronic sequence compared to a reference transcript sequence." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	46975	\N	\N	sequence	0	SO	pseudogenic_transcript_with_retained_intron	pseudogenic_transcript_with_retained_intron
SO:0000185	SO:0002115	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0002115	"A transcript supported by EST and/or mRNA evidence that aligns unambiguously to the pseudogene locus; has retained intronic sequence compared to a reference transcript sequence." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	491787	\N	SOFA	sequence	1	SO	primary_transcript	pseudogenic_transcript_with_retained_intron
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002115	"A transcript supported by EST and/or mRNA evidence that aligns unambiguously to the pseudogene locus; has retained intronic sequence compared to a reference transcript sequence." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1074467	SOFA	SOFA	sequence	2	SO	transcript	pseudogenic_transcript_with_retained_intron
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002115	"A transcript supported by EST and/or mRNA evidence that aligns unambiguously to the pseudogene locus; has retained intronic sequence compared to a reference transcript sequence." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1905635	SOFA	SOFA	sequence	3	SO	gene_member_region	pseudogenic_transcript_with_retained_intron
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002115	"A transcript supported by EST and/or mRNA evidence that aligns unambiguously to the pseudogene locus; has retained intronic sequence compared to a reference transcript sequence." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	2930061	SOFA	SOFA	sequence	4	SO	biological_region	pseudogenic_transcript_with_retained_intron
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002115	"A transcript supported by EST and/or mRNA evidence that aligns unambiguously to the pseudogene locus; has retained intronic sequence compared to a reference transcript sequence." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4003071	SOFA	SOFA	sequence	5	SO	region	pseudogenic_transcript_with_retained_intron
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002115	"A transcript supported by EST and/or mRNA evidence that aligns unambiguously to the pseudogene locus; has retained intronic sequence compared to a reference transcript sequence." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4967204	SOFA	SOFA	sequence	6	SO	sequence_feature	pseudogenic_transcript_with_retained_intron
SO:0002116	\N	\N	"A processed transcript that does not contain a CDS that fullfills annotation criteria and not necessarily functionally non-coding." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002116	"A processed transcript that does not contain a CDS that fullfills annotation criteria and not necessarily functionally non-coding." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	46976	\N	\N	sequence	0	SO	polymorphic_pseudogene_processed_transcript	polymorphic_pseudogene_processed_transcript
SO:0002111	SO:0002116	\N	"A processed_transcript supported by EST and/or mRNA evidence that aligns unambiguously to a pseudogene locus (i.e. alignment to the pseudogene locus clearly better than alignment to parent locus)." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002116	"A processed transcript that does not contain a CDS that fullfills annotation criteria and not necessarily functionally non-coding." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	491788	\N	\N	sequence	1	SO	pseudogene_processed_transcript	polymorphic_pseudogene_processed_transcript
SO:0001503	SO:0002111	\N	"A transcript for which no open reading frame has been identified and for which no other function has been determined." [MGI:hdeen]	SO:0002116	"A processed transcript that does not contain a CDS that fullfills annotation criteria and not necessarily functionally non-coding." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1074468	\N	\N	sequence	2	SO	processed_transcript	polymorphic_pseudogene_processed_transcript
SO:0000673	SO:0001503	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002116	"A processed transcript that does not contain a CDS that fullfills annotation criteria and not necessarily functionally non-coding." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1905636	\N	SOFA	sequence	3	SO	transcript	polymorphic_pseudogene_processed_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002116	"A processed transcript that does not contain a CDS that fullfills annotation criteria and not necessarily functionally non-coding." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	2930062	SOFA	SOFA	sequence	4	SO	gene_member_region	polymorphic_pseudogene_processed_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002116	"A processed transcript that does not contain a CDS that fullfills annotation criteria and not necessarily functionally non-coding." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4003072	SOFA	SOFA	sequence	5	SO	biological_region	polymorphic_pseudogene_processed_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002116	"A processed transcript that does not contain a CDS that fullfills annotation criteria and not necessarily functionally non-coding." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4967205	SOFA	SOFA	sequence	6	SO	region	polymorphic_pseudogene_processed_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002116	"A processed transcript that does not contain a CDS that fullfills annotation criteria and not necessarily functionally non-coding." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	5741686	SOFA	SOFA	sequence	7	SO	sequence_feature	polymorphic_pseudogene_processed_transcript
SO:0002118	\N	\N	"A polymorphic pseudogene transcript that contains a CDS but has one or more splice junctions >50bp downstream of stop codon. Premature stop codon is not introduced, directly or indirectly, as a result of the variation i.e. must be present in both protein_coding and pseudogenic alleles." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002118	"A polymorphic pseudogene transcript that contains a CDS but has one or more splice junctions >50bp downstream of stop codon. Premature stop codon is not introduced, directly or indirectly, as a result of the variation i.e. must be present in both protein_coding and pseudogenic alleles." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	46977	\N	\N	sequence	0	SO	NMD_polymorphic_pseudogene_transcript	NMD_polymorphic_pseudogene_transcript
SO:0002114	SO:0002118	\N	"A protein coding transcript that contains a CDS but has one or more splice junctions >50bp downstream of stop codon, making it susceptible to nonsense mediated decay." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002118	"A polymorphic pseudogene transcript that contains a CDS but has one or more splice junctions >50bp downstream of stop codon. Premature stop codon is not introduced, directly or indirectly, as a result of the variation i.e. must be present in both protein_coding and pseudogenic alleles." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	491789	\N	\N	sequence	1	SO	NMD_transcript	NMD_polymorphic_pseudogene_transcript
SO:0000120	SO:0002114	\N	"A primary transcript that, at least in part, encodes one or more proteins." [SO:ke]	SO:0002118	"A polymorphic pseudogene transcript that contains a CDS but has one or more splice junctions >50bp downstream of stop codon. Premature stop codon is not introduced, directly or indirectly, as a result of the variation i.e. must be present in both protein_coding and pseudogenic alleles." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1074469	\N	SOFA	sequence	2	SO	protein_coding_primary_transcript	NMD_polymorphic_pseudogene_transcript
SO:0000185	SO:0000120	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0002118	"A polymorphic pseudogene transcript that contains a CDS but has one or more splice junctions >50bp downstream of stop codon. Premature stop codon is not introduced, directly or indirectly, as a result of the variation i.e. must be present in both protein_coding and pseudogenic alleles." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1905637	SOFA	SOFA	sequence	3	SO	primary_transcript	NMD_polymorphic_pseudogene_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002118	"A polymorphic pseudogene transcript that contains a CDS but has one or more splice junctions >50bp downstream of stop codon. Premature stop codon is not introduced, directly or indirectly, as a result of the variation i.e. must be present in both protein_coding and pseudogenic alleles." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	2930063	SOFA	SOFA	sequence	4	SO	transcript	NMD_polymorphic_pseudogene_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002118	"A polymorphic pseudogene transcript that contains a CDS but has one or more splice junctions >50bp downstream of stop codon. Premature stop codon is not introduced, directly or indirectly, as a result of the variation i.e. must be present in both protein_coding and pseudogenic alleles." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4003073	SOFA	SOFA	sequence	5	SO	gene_member_region	NMD_polymorphic_pseudogene_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002118	"A polymorphic pseudogene transcript that contains a CDS but has one or more splice junctions >50bp downstream of stop codon. Premature stop codon is not introduced, directly or indirectly, as a result of the variation i.e. must be present in both protein_coding and pseudogenic alleles." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4967206	SOFA	SOFA	sequence	6	SO	biological_region	NMD_polymorphic_pseudogene_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002118	"A polymorphic pseudogene transcript that contains a CDS but has one or more splice junctions >50bp downstream of stop codon. Premature stop codon is not introduced, directly or indirectly, as a result of the variation i.e. must be present in both protein_coding and pseudogenic alleles." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	5741687	SOFA	SOFA	sequence	7	SO	region	NMD_polymorphic_pseudogene_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002118	"A polymorphic pseudogene transcript that contains a CDS but has one or more splice junctions >50bp downstream of stop codon. Premature stop codon is not introduced, directly or indirectly, as a result of the variation i.e. must be present in both protein_coding and pseudogenic alleles." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	6311332	SOFA	SOFA	sequence	8	SO	sequence_feature	NMD_polymorphic_pseudogene_transcript
SO:0002119	\N	\N	"A physical quality which inheres to the allele by virtue of the number instances of the allele within a population. This is the relative frequency of the allele at a given locus in a population." [SO:ke]	SO:0002119	"A physical quality which inheres to the allele by virtue of the number instances of the allele within a population. This is the relative frequency of the allele at a given locus in a population." [SO:ke]	46978	\N	\N	sequence	0	SO	allelic_frequency	allelic_frequency
SO:0001763	SO:0002119	\N	"A physical quality which inheres to the variant by virtue of the number instances of the variant within a population." [PMID:17597783, SO:ke]	SO:0002119	"A physical quality which inheres to the allele by virtue of the number instances of the allele within a population. This is the relative frequency of the allele at a given locus in a population." [SO:ke]	491790	\N	\N	sequence	1	SO	variant_frequency	allelic_frequency
SO:0001761	SO:0001763	\N	"A dependent entity that inheres in a bearer, a sequence variant." [PMID:17597783, SO:ke]	SO:0002119	"A physical quality which inheres to the allele by virtue of the number instances of the allele within a population. This is the relative frequency of the allele at a given locus in a population." [SO:ke]	1074470	\N	\N	sequence	2	SO	variant_quality	allelic_frequency
SO:0000400	SO:0001761	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0002119	"A physical quality which inheres to the allele by virtue of the number instances of the allele within a population. This is the relative frequency of the allele at a given locus in a population." [SO:ke]	1905638	\N	\N	sequence	3	SO	sequence_attribute	allelic_frequency
SO:0002120	\N	\N	"Transcript where ditag (digital gene expression profiling)and/or published experimental data strongly supports the existence of short non-coding transcripts transcribed from the 3'UTR." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002120	"Transcript where ditag (digital gene expression profiling)and/or published experimental data strongly supports the existence of short non-coding transcripts transcribed from the 3'UTR." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	46979	\N	\N	sequence	0	SO	three_prime_overlapping_ncrna	three_prime_overlapping_ncrna
SO:0000655	SO:0002120	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0002120	"Transcript where ditag (digital gene expression profiling)and/or published experimental data strongly supports the existence of short non-coding transcripts transcribed from the 3'UTR." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	491791	\N	SOFA	sequence	1	SO	ncRNA	three_prime_overlapping_ncrna
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0002120	"Transcript where ditag (digital gene expression profiling)and/or published experimental data strongly supports the existence of short non-coding transcripts transcribed from the 3'UTR." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1074471	SOFA	SOFA	sequence	2	SO	mature_transcript	three_prime_overlapping_ncrna
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002120	"Transcript where ditag (digital gene expression profiling)and/or published experimental data strongly supports the existence of short non-coding transcripts transcribed from the 3'UTR." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1905639	SOFA	SOFA	sequence	3	SO	transcript	three_prime_overlapping_ncrna
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002120	"Transcript where ditag (digital gene expression profiling)and/or published experimental data strongly supports the existence of short non-coding transcripts transcribed from the 3'UTR." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	2930064	SOFA	SOFA	sequence	4	SO	gene_member_region	three_prime_overlapping_ncrna
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002120	"Transcript where ditag (digital gene expression profiling)and/or published experimental data strongly supports the existence of short non-coding transcripts transcribed from the 3'UTR." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4003074	SOFA	SOFA	sequence	5	SO	biological_region	three_prime_overlapping_ncrna
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002120	"Transcript where ditag (digital gene expression profiling)and/or published experimental data strongly supports the existence of short non-coding transcripts transcribed from the 3'UTR." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4967207	SOFA	SOFA	sequence	6	SO	region	three_prime_overlapping_ncrna
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002120	"Transcript where ditag (digital gene expression profiling)and/or published experimental data strongly supports the existence of short non-coding transcripts transcribed from the 3'UTR." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	5741688	SOFA	SOFA	sequence	7	SO	sequence_feature	three_prime_overlapping_ncrna
SO:0002121	\N	\N	"The configuration of the  IG and TR variable (V), diversity (D) and joining (J) germline genes before DNA rearrangements  (with or without constant (C) genes in undefined configuration. (germline, non rearranged regions of the IG DNA loci)." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	SO:0002121	"The configuration of the  IG and TR variable (V), diversity (D) and joining (J) germline genes before DNA rearrangements  (with or without constant (C) genes in undefined configuration. (germline, non rearranged regions of the IG DNA loci)." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	46980	\N	\N	sequence	0	SO	vertebrate_immune_system_gene	vertebrate_immune_system_gene
SO:0000704	SO:0002121	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0002121	"The configuration of the  IG and TR variable (V), diversity (D) and joining (J) germline genes before DNA rearrangements  (with or without constant (C) genes in undefined configuration. (germline, non rearranged regions of the IG DNA loci)." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	491792	\N	SOFA	sequence	1	SO	gene	vertebrate_immune_system_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002121	"The configuration of the  IG and TR variable (V), diversity (D) and joining (J) germline genes before DNA rearrangements  (with or without constant (C) genes in undefined configuration. (germline, non rearranged regions of the IG DNA loci)." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	1074472	SOFA	SOFA	sequence	2	SO	biological_region	vertebrate_immune_system_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002121	"The configuration of the  IG and TR variable (V), diversity (D) and joining (J) germline genes before DNA rearrangements  (with or without constant (C) genes in undefined configuration. (germline, non rearranged regions of the IG DNA loci)." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	1905640	SOFA	SOFA	sequence	3	SO	region	vertebrate_immune_system_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002121	"The configuration of the  IG and TR variable (V), diversity (D) and joining (J) germline genes before DNA rearrangements  (with or without constant (C) genes in undefined configuration. (germline, non rearranged regions of the IG DNA loci)." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	2930065	SOFA	SOFA	sequence	4	SO	sequence_feature	vertebrate_immune_system_gene
SO:0002122	\N	\N	"A germline immunoglobulin  gene." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002122	"A germline immunoglobulin  gene." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	46981	\N	\N	sequence	0	SO	immunoglobulin_gene	immunoglobulin_gene
SO:0002121	SO:0002122	\N	"The configuration of the  IG and TR variable (V), diversity (D) and joining (J) germline genes before DNA rearrangements  (with or without constant (C) genes in undefined configuration. (germline, non rearranged regions of the IG DNA loci)." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	SO:0002122	"A germline immunoglobulin  gene." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	491793	\N	\N	sequence	1	SO	vertebrate_immune_system_gene	immunoglobulin_gene
SO:0000704	SO:0002121	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0002122	"A germline immunoglobulin  gene." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1074473	\N	SOFA	sequence	2	SO	gene	immunoglobulin_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002122	"A germline immunoglobulin  gene." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1905641	SOFA	SOFA	sequence	3	SO	biological_region	immunoglobulin_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002122	"A germline immunoglobulin  gene." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	2930066	SOFA	SOFA	sequence	4	SO	region	immunoglobulin_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002122	"A germline immunoglobulin  gene." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4003075	SOFA	SOFA	sequence	5	SO	sequence_feature	immunoglobulin_gene
SO:0002123	\N	\N	"A constant (C) gene, a gene that codes the constant region of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	SO:0002123	"A constant (C) gene, a gene that codes the constant region of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	46982	\N	\N	sequence	0	SO	IG_C_gene	IG_C_gene
SO:0002122	SO:0002123	\N	"A germline immunoglobulin  gene." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002123	"A constant (C) gene, a gene that codes the constant region of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	491794	\N	\N	sequence	1	SO	immunoglobulin_gene	IG_C_gene
SO:0002121	SO:0002122	\N	"The configuration of the  IG and TR variable (V), diversity (D) and joining (J) germline genes before DNA rearrangements  (with or without constant (C) genes in undefined configuration. (germline, non rearranged regions of the IG DNA loci)." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	SO:0002123	"A constant (C) gene, a gene that codes the constant region of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	1074474	\N	\N	sequence	2	SO	vertebrate_immune_system_gene	IG_C_gene
SO:0000704	SO:0002121	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0002123	"A constant (C) gene, a gene that codes the constant region of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	1905642	\N	SOFA	sequence	3	SO	gene	IG_C_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002123	"A constant (C) gene, a gene that codes the constant region of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	2930067	SOFA	SOFA	sequence	4	SO	biological_region	IG_C_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002123	"A constant (C) gene, a gene that codes the constant region of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	4003076	SOFA	SOFA	sequence	5	SO	region	IG_C_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002123	"A constant (C) gene, a gene that codes the constant region of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	4967208	SOFA	SOFA	sequence	6	SO	sequence_feature	IG_C_gene
SO:0002124	\N	\N	"A gene that rearranges at the DNA level and codes the diversity region of the variable domain of an immunoglobuin (IG) gene." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	SO:0002124	"A gene that rearranges at the DNA level and codes the diversity region of the variable domain of an immunoglobuin (IG) gene." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	46983	\N	\N	sequence	0	SO	IG_D_gene	IG_D_gene
SO:0002122	SO:0002124	\N	"A germline immunoglobulin  gene." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002124	"A gene that rearranges at the DNA level and codes the diversity region of the variable domain of an immunoglobuin (IG) gene." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	491795	\N	\N	sequence	1	SO	immunoglobulin_gene	IG_D_gene
SO:0002121	SO:0002122	\N	"The configuration of the  IG and TR variable (V), diversity (D) and joining (J) germline genes before DNA rearrangements  (with or without constant (C) genes in undefined configuration. (germline, non rearranged regions of the IG DNA loci)." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	SO:0002124	"A gene that rearranges at the DNA level and codes the diversity region of the variable domain of an immunoglobuin (IG) gene." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	1074475	\N	\N	sequence	2	SO	vertebrate_immune_system_gene	IG_D_gene
SO:0000704	SO:0002121	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0002124	"A gene that rearranges at the DNA level and codes the diversity region of the variable domain of an immunoglobuin (IG) gene." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	1905643	\N	SOFA	sequence	3	SO	gene	IG_D_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002124	"A gene that rearranges at the DNA level and codes the diversity region of the variable domain of an immunoglobuin (IG) gene." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	2930068	SOFA	SOFA	sequence	4	SO	biological_region	IG_D_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002124	"A gene that rearranges at the DNA level and codes the diversity region of the variable domain of an immunoglobuin (IG) gene." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	4003077	SOFA	SOFA	sequence	5	SO	region	IG_D_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002124	"A gene that rearranges at the DNA level and codes the diversity region of the variable domain of an immunoglobuin (IG) gene." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	4967209	SOFA	SOFA	sequence	6	SO	sequence_feature	IG_D_gene
SO:0002125	\N	\N	"A joining gene that rearranges at the DNA level and codes the joining region of the variable domain of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	SO:0002125	"A joining gene that rearranges at the DNA level and codes the joining region of the variable domain of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	46984	\N	\N	sequence	0	SO	IG_J_gene	IG_J_gene
SO:0002122	SO:0002125	\N	"A germline immunoglobulin  gene." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002125	"A joining gene that rearranges at the DNA level and codes the joining region of the variable domain of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	491796	\N	\N	sequence	1	SO	immunoglobulin_gene	IG_J_gene
SO:0002121	SO:0002122	\N	"The configuration of the  IG and TR variable (V), diversity (D) and joining (J) germline genes before DNA rearrangements  (with or without constant (C) genes in undefined configuration. (germline, non rearranged regions of the IG DNA loci)." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	SO:0002125	"A joining gene that rearranges at the DNA level and codes the joining region of the variable domain of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	1074476	\N	\N	sequence	2	SO	vertebrate_immune_system_gene	IG_J_gene
SO:0000704	SO:0002121	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0002125	"A joining gene that rearranges at the DNA level and codes the joining region of the variable domain of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	1905644	\N	SOFA	sequence	3	SO	gene	IG_J_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002125	"A joining gene that rearranges at the DNA level and codes the joining region of the variable domain of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	2930069	SOFA	SOFA	sequence	4	SO	biological_region	IG_J_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002125	"A joining gene that rearranges at the DNA level and codes the joining region of the variable domain of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	4003078	SOFA	SOFA	sequence	5	SO	region	IG_J_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002125	"A joining gene that rearranges at the DNA level and codes the joining region of the variable domain of an immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	4967210	SOFA	SOFA	sequence	6	SO	sequence_feature	IG_J_gene
SO:0002126	\N	\N	"A variable gene that rearranges at the DNA level and codes the variable region of the variable domain of an Immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	SO:0002126	"A variable gene that rearranges at the DNA level and codes the variable region of the variable domain of an Immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	46985	\N	\N	sequence	0	SO	IG_V_gene	IG_V_gene
SO:0002122	SO:0002126	\N	"A germline immunoglobulin  gene." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002126	"A variable gene that rearranges at the DNA level and codes the variable region of the variable domain of an Immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	491797	\N	\N	sequence	1	SO	immunoglobulin_gene	IG_V_gene
SO:0002121	SO:0002122	\N	"The configuration of the  IG and TR variable (V), diversity (D) and joining (J) germline genes before DNA rearrangements  (with or without constant (C) genes in undefined configuration. (germline, non rearranged regions of the IG DNA loci)." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	SO:0002126	"A variable gene that rearranges at the DNA level and codes the variable region of the variable domain of an Immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	1074477	\N	\N	sequence	2	SO	vertebrate_immune_system_gene	IG_V_gene
SO:0000704	SO:0002121	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0002126	"A variable gene that rearranges at the DNA level and codes the variable region of the variable domain of an Immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	1905645	\N	SOFA	sequence	3	SO	gene	IG_V_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002126	"A variable gene that rearranges at the DNA level and codes the variable region of the variable domain of an Immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	2930070	SOFA	SOFA	sequence	4	SO	biological_region	IG_V_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002126	"A variable gene that rearranges at the DNA level and codes the variable region of the variable domain of an Immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	4003079	SOFA	SOFA	sequence	5	SO	region	IG_V_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002126	"A variable gene that rearranges at the DNA level and codes the variable region of the variable domain of an Immunoglobulin chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	4967211	SOFA	SOFA	sequence	6	SO	sequence_feature	IG_V_gene
SO:0002127	\N	\N	"A gene that encodes a long non-coding RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002127	"A gene that encodes a long non-coding RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	46986	\N	\N	sequence	0	SO	lncRNA_gene	lncRNA_gene
SO:0001263	SO:0002127	\N	"A gene that encodes a non-coding RNA." []	SO:0002127	"A gene that encodes a long non-coding RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	491798	\N	\N	sequence	1	SO	ncRNA_gene	lncRNA_gene
SO:0000704	SO:0001263	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0002127	"A gene that encodes a long non-coding RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1074478	\N	SOFA	sequence	2	SO	gene	lncRNA_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002127	"A gene that encodes a long non-coding RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1905646	SOFA	SOFA	sequence	3	SO	biological_region	lncRNA_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002127	"A gene that encodes a long non-coding RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	2930071	SOFA	SOFA	sequence	4	SO	region	lncRNA_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002127	"A gene that encodes a long non-coding RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4003080	SOFA	SOFA	sequence	5	SO	sequence_feature	lncRNA_gene
SO:0002128	\N	\N	"Mitochondrial ribosomal RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002128	"Mitochondrial ribosomal RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	46987	\N	\N	sequence	0	SO	mt_rRNA	mt_rRNA
SO:0000252	SO:0002128	\N	"RNA that comprises part of a ribosome, and that can provide both structural scaffolding and catalytic activity." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, ISBN:0198506732]	SO:0002128	"Mitochondrial ribosomal RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	491799	\N	SOFA	sequence	1	SO	rRNA	mt_rRNA
SO:0000655	SO:0000252	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0002128	"Mitochondrial ribosomal RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1074479	SOFA	SOFA	sequence	2	SO	ncRNA	mt_rRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0002128	"Mitochondrial ribosomal RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1905647	SOFA	SOFA	sequence	3	SO	mature_transcript	mt_rRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002128	"Mitochondrial ribosomal RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	2930072	SOFA	SOFA	sequence	4	SO	transcript	mt_rRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002128	"Mitochondrial ribosomal RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4003081	SOFA	SOFA	sequence	5	SO	gene_member_region	mt_rRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002128	"Mitochondrial ribosomal RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4967212	SOFA	SOFA	sequence	6	SO	biological_region	mt_rRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002128	"Mitochondrial ribosomal RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	5741689	SOFA	SOFA	sequence	7	SO	region	mt_rRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002128	"Mitochondrial ribosomal RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	6311333	SOFA	SOFA	sequence	8	SO	sequence_feature	mt_rRNA
SO:0002129	\N	\N	"Mitochondrial transfer RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002129	"Mitochondrial transfer RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	46988	\N	\N	sequence	0	SO	mt_tRNA	mt_tRNA
SO:0000253	SO:0002129	\N	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	SO:0002129	"Mitochondrial transfer RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	491800	\N	SOFA	sequence	1	SO	tRNA	mt_tRNA
SO:0000655	SO:0000253	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0002129	"Mitochondrial transfer RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1074480	SOFA	SOFA	sequence	2	SO	ncRNA	mt_tRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0002129	"Mitochondrial transfer RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1905648	SOFA	SOFA	sequence	3	SO	mature_transcript	mt_tRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002129	"Mitochondrial transfer RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	2930073	SOFA	SOFA	sequence	4	SO	transcript	mt_tRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002129	"Mitochondrial transfer RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4003082	SOFA	SOFA	sequence	5	SO	gene_member_region	mt_tRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002129	"Mitochondrial transfer RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4967213	SOFA	SOFA	sequence	6	SO	biological_region	mt_tRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002129	"Mitochondrial transfer RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	5741690	SOFA	SOFA	sequence	7	SO	region	mt_tRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002129	"Mitochondrial transfer RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	6311334	SOFA	SOFA	sequence	8	SO	sequence_feature	mt_tRNA
SO:0002130	\N	\N	"A transcript that contains a CDS but has no stop codon before the polyA site is reached." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002130	"A transcript that contains a CDS but has no stop codon before the polyA site is reached." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	46989	\N	\N	sequence	0	SO	NSD_transcript	NSD_transcript
SO:0000234	SO:0002130	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0002130	"A transcript that contains a CDS but has no stop codon before the polyA site is reached." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	491801	\N	SOFA	sequence	1	SO	mRNA	NSD_transcript
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0002130	"A transcript that contains a CDS but has no stop codon before the polyA site is reached." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1074481	SOFA	SOFA	sequence	2	SO	mature_transcript	NSD_transcript
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002130	"A transcript that contains a CDS but has no stop codon before the polyA site is reached." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1905649	SOFA	SOFA	sequence	3	SO	transcript	NSD_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002130	"A transcript that contains a CDS but has no stop codon before the polyA site is reached." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	2930074	SOFA	SOFA	sequence	4	SO	gene_member_region	NSD_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002130	"A transcript that contains a CDS but has no stop codon before the polyA site is reached." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4003083	SOFA	SOFA	sequence	5	SO	biological_region	NSD_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002130	"A transcript that contains a CDS but has no stop codon before the polyA site is reached." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4967214	SOFA	SOFA	sequence	6	SO	region	NSD_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002130	"A transcript that contains a CDS but has no stop codon before the polyA site is reached." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	5741691	SOFA	SOFA	sequence	7	SO	sequence_feature	NSD_transcript
SO:0002131	\N	\N	"A long non-coding transcript found within an intron of a coding or non-coding gene, with no overlap of exonic sequence." [GENECODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002131	"A long non-coding transcript found within an intron of a coding or non-coding gene, with no overlap of exonic sequence." [GENECODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	46990	\N	\N	sequence	0	SO	sense_intronic_ncRNA	sense_intronic_ncRNA
SO:0001877	SO:0002131	\N	"A non-coding RNA over 200nucleotides in length." [HGNC:mw]	SO:0002131	"A long non-coding transcript found within an intron of a coding or non-coding gene, with no overlap of exonic sequence." [GENECODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	491802	\N	\N	sequence	1	SO	lnc_RNA	sense_intronic_ncRNA
SO:0000655	SO:0001877	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0002131	"A long non-coding transcript found within an intron of a coding or non-coding gene, with no overlap of exonic sequence." [GENECODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1074482	\N	SOFA	sequence	2	SO	ncRNA	sense_intronic_ncRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0002131	"A long non-coding transcript found within an intron of a coding or non-coding gene, with no overlap of exonic sequence." [GENECODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1905650	SOFA	SOFA	sequence	3	SO	mature_transcript	sense_intronic_ncRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002131	"A long non-coding transcript found within an intron of a coding or non-coding gene, with no overlap of exonic sequence." [GENECODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	2930075	SOFA	SOFA	sequence	4	SO	transcript	sense_intronic_ncRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002131	"A long non-coding transcript found within an intron of a coding or non-coding gene, with no overlap of exonic sequence." [GENECODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4003084	SOFA	SOFA	sequence	5	SO	gene_member_region	sense_intronic_ncRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002131	"A long non-coding transcript found within an intron of a coding or non-coding gene, with no overlap of exonic sequence." [GENECODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4967215	SOFA	SOFA	sequence	6	SO	biological_region	sense_intronic_ncRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002131	"A long non-coding transcript found within an intron of a coding or non-coding gene, with no overlap of exonic sequence." [GENECODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	5741692	SOFA	SOFA	sequence	7	SO	region	sense_intronic_ncRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002131	"A long non-coding transcript found within an intron of a coding or non-coding gene, with no overlap of exonic sequence." [GENECODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	6311335	SOFA	SOFA	sequence	8	SO	sequence_feature	sense_intronic_ncRNA
SO:0002132	\N	\N	"A long non-coding transcript that contains a protein coding gene within its intronic sequence on the same strand, with no overlap of exonic sequence." [GENECODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002132	"A long non-coding transcript that contains a protein coding gene within its intronic sequence on the same strand, with no overlap of exonic sequence." [GENECODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	46991	\N	\N	sequence	0	SO	sense_overlap_ncRNA	sense_overlap_ncRNA
SO:0001877	SO:0002132	\N	"A non-coding RNA over 200nucleotides in length." [HGNC:mw]	SO:0002132	"A long non-coding transcript that contains a protein coding gene within its intronic sequence on the same strand, with no overlap of exonic sequence." [GENECODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	491803	\N	\N	sequence	1	SO	lnc_RNA	sense_overlap_ncRNA
SO:0000655	SO:0001877	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0002132	"A long non-coding transcript that contains a protein coding gene within its intronic sequence on the same strand, with no overlap of exonic sequence." [GENECODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1074483	\N	SOFA	sequence	2	SO	ncRNA	sense_overlap_ncRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0002132	"A long non-coding transcript that contains a protein coding gene within its intronic sequence on the same strand, with no overlap of exonic sequence." [GENECODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1905651	SOFA	SOFA	sequence	3	SO	mature_transcript	sense_overlap_ncRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002132	"A long non-coding transcript that contains a protein coding gene within its intronic sequence on the same strand, with no overlap of exonic sequence." [GENECODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	2930076	SOFA	SOFA	sequence	4	SO	transcript	sense_overlap_ncRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002132	"A long non-coding transcript that contains a protein coding gene within its intronic sequence on the same strand, with no overlap of exonic sequence." [GENECODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4003085	SOFA	SOFA	sequence	5	SO	gene_member_region	sense_overlap_ncRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002132	"A long non-coding transcript that contains a protein coding gene within its intronic sequence on the same strand, with no overlap of exonic sequence." [GENECODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4967216	SOFA	SOFA	sequence	6	SO	biological_region	sense_overlap_ncRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002132	"A long non-coding transcript that contains a protein coding gene within its intronic sequence on the same strand, with no overlap of exonic sequence." [GENECODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	5741693	SOFA	SOFA	sequence	7	SO	region	sense_overlap_ncRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002132	"A long non-coding transcript that contains a protein coding gene within its intronic sequence on the same strand, with no overlap of exonic sequence." [GENECODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	6311336	SOFA	SOFA	sequence	8	SO	sequence_feature	sense_overlap_ncRNA
SO:0002133	\N	\N	"A T-cell receptor germline gene." []	SO:0002133	"A T-cell receptor germline gene." []	46992	\N	\N	sequence	0	SO	T_cell_receptor_gene	T_cell_receptor_gene
SO:0002121	SO:0002133	\N	"The configuration of the  IG and TR variable (V), diversity (D) and joining (J) germline genes before DNA rearrangements  (with or without constant (C) genes in undefined configuration. (germline, non rearranged regions of the IG DNA loci)." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	SO:0002133	"A T-cell receptor germline gene." []	491804	\N	\N	sequence	1	SO	vertebrate_immune_system_gene	T_cell_receptor_gene
SO:0000704	SO:0002121	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0002133	"A T-cell receptor germline gene." []	1074484	\N	SOFA	sequence	2	SO	gene	T_cell_receptor_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002133	"A T-cell receptor germline gene." []	1905652	SOFA	SOFA	sequence	3	SO	biological_region	T_cell_receptor_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002133	"A T-cell receptor germline gene." []	2930077	SOFA	SOFA	sequence	4	SO	region	T_cell_receptor_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002133	"A T-cell receptor germline gene." []	4003086	SOFA	SOFA	sequence	5	SO	sequence_feature	T_cell_receptor_gene
SO:0002134	\N	\N	"A constant (C) gene, a gene that codes the constant region of a T-cell receptor chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	SO:0002134	"A constant (C) gene, a gene that codes the constant region of a T-cell receptor chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	46993	\N	\N	sequence	0	SO	TR_C_Gene	TR_C_Gene
SO:0002133	SO:0002134	\N	"A T-cell receptor germline gene." []	SO:0002134	"A constant (C) gene, a gene that codes the constant region of a T-cell receptor chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	491805	\N	\N	sequence	1	SO	T_cell_receptor_gene	TR_C_Gene
SO:0002121	SO:0002133	\N	"The configuration of the  IG and TR variable (V), diversity (D) and joining (J) germline genes before DNA rearrangements  (with or without constant (C) genes in undefined configuration. (germline, non rearranged regions of the IG DNA loci)." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	SO:0002134	"A constant (C) gene, a gene that codes the constant region of a T-cell receptor chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	1074485	\N	\N	sequence	2	SO	vertebrate_immune_system_gene	TR_C_Gene
SO:0000704	SO:0002121	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0002134	"A constant (C) gene, a gene that codes the constant region of a T-cell receptor chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	1905653	\N	SOFA	sequence	3	SO	gene	TR_C_Gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002134	"A constant (C) gene, a gene that codes the constant region of a T-cell receptor chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	2930078	SOFA	SOFA	sequence	4	SO	biological_region	TR_C_Gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002134	"A constant (C) gene, a gene that codes the constant region of a T-cell receptor chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	4003087	SOFA	SOFA	sequence	5	SO	region	TR_C_Gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002134	"A constant (C) gene, a gene that codes the constant region of a T-cell receptor chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	4967217	SOFA	SOFA	sequence	6	SO	sequence_feature	TR_C_Gene
SO:0002135	\N	\N	"A gene that rearranges at the DNA level and codes the diversity region of the variable domain of aT-cell receptor gene." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	SO:0002135	"A gene that rearranges at the DNA level and codes the diversity region of the variable domain of aT-cell receptor gene." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	46994	\N	\N	sequence	0	SO	TR_D_Gene	TR_D_Gene
SO:0002133	SO:0002135	\N	"A T-cell receptor germline gene." []	SO:0002135	"A gene that rearranges at the DNA level and codes the diversity region of the variable domain of aT-cell receptor gene." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	491806	\N	\N	sequence	1	SO	T_cell_receptor_gene	TR_D_Gene
SO:0002121	SO:0002133	\N	"The configuration of the  IG and TR variable (V), diversity (D) and joining (J) germline genes before DNA rearrangements  (with or without constant (C) genes in undefined configuration. (germline, non rearranged regions of the IG DNA loci)." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	SO:0002135	"A gene that rearranges at the DNA level and codes the diversity region of the variable domain of aT-cell receptor gene." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	1074486	\N	\N	sequence	2	SO	vertebrate_immune_system_gene	TR_D_Gene
SO:0000704	SO:0002121	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0002135	"A gene that rearranges at the DNA level and codes the diversity region of the variable domain of aT-cell receptor gene." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	1905654	\N	SOFA	sequence	3	SO	gene	TR_D_Gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002135	"A gene that rearranges at the DNA level and codes the diversity region of the variable domain of aT-cell receptor gene." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	2930079	SOFA	SOFA	sequence	4	SO	biological_region	TR_D_Gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002135	"A gene that rearranges at the DNA level and codes the diversity region of the variable domain of aT-cell receptor gene." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	4003088	SOFA	SOFA	sequence	5	SO	region	TR_D_Gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002135	"A gene that rearranges at the DNA level and codes the diversity region of the variable domain of aT-cell receptor gene." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	4967218	SOFA	SOFA	sequence	6	SO	sequence_feature	TR_D_Gene
SO:0002136	\N	\N	"A joining gene that rearranges at the DNA level and codes the joining region of the variable domain of aT-cell receptor chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	SO:0002136	"A joining gene that rearranges at the DNA level and codes the joining region of the variable domain of aT-cell receptor chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	46995	\N	\N	sequence	0	SO	TR_J_Gene	TR_J_Gene
SO:0002133	SO:0002136	\N	"A T-cell receptor germline gene." []	SO:0002136	"A joining gene that rearranges at the DNA level and codes the joining region of the variable domain of aT-cell receptor chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	491807	\N	\N	sequence	1	SO	T_cell_receptor_gene	TR_J_Gene
SO:0002121	SO:0002133	\N	"The configuration of the  IG and TR variable (V), diversity (D) and joining (J) germline genes before DNA rearrangements  (with or without constant (C) genes in undefined configuration. (germline, non rearranged regions of the IG DNA loci)." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	SO:0002136	"A joining gene that rearranges at the DNA level and codes the joining region of the variable domain of aT-cell receptor chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	1074487	\N	\N	sequence	2	SO	vertebrate_immune_system_gene	TR_J_Gene
SO:0000704	SO:0002121	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0002136	"A joining gene that rearranges at the DNA level and codes the joining region of the variable domain of aT-cell receptor chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	1905655	\N	SOFA	sequence	3	SO	gene	TR_J_Gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002136	"A joining gene that rearranges at the DNA level and codes the joining region of the variable domain of aT-cell receptor chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	2930080	SOFA	SOFA	sequence	4	SO	biological_region	TR_J_Gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002136	"A joining gene that rearranges at the DNA level and codes the joining region of the variable domain of aT-cell receptor chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	4003089	SOFA	SOFA	sequence	5	SO	region	TR_J_Gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002136	"A joining gene that rearranges at the DNA level and codes the joining region of the variable domain of aT-cell receptor chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	4967219	SOFA	SOFA	sequence	6	SO	sequence_feature	TR_J_Gene
SO:0002137	\N	\N	"A variable gene that rearranges at the DNA level and codes the variable region of the variable domain of aT-cell receptor chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	SO:0002137	"A variable gene that rearranges at the DNA level and codes the variable region of the variable domain of aT-cell receptor chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	46996	\N	\N	sequence	0	SO	TR_V_Gene	TR_V_Gene
SO:0002133	SO:0002137	\N	"A T-cell receptor germline gene." []	SO:0002137	"A variable gene that rearranges at the DNA level and codes the variable region of the variable domain of aT-cell receptor chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	491808	\N	\N	sequence	1	SO	T_cell_receptor_gene	TR_V_Gene
SO:0002121	SO:0002133	\N	"The configuration of the  IG and TR variable (V), diversity (D) and joining (J) germline genes before DNA rearrangements  (with or without constant (C) genes in undefined configuration. (germline, non rearranged regions of the IG DNA loci)." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	SO:0002137	"A variable gene that rearranges at the DNA level and codes the variable region of the variable domain of aT-cell receptor chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	1074488	\N	\N	sequence	2	SO	vertebrate_immune_system_gene	TR_V_Gene
SO:0000704	SO:0002121	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0002137	"A variable gene that rearranges at the DNA level and codes the variable region of the variable domain of aT-cell receptor chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	1905656	\N	SOFA	sequence	3	SO	gene	TR_V_Gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002137	"A variable gene that rearranges at the DNA level and codes the variable region of the variable domain of aT-cell receptor chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	2930081	SOFA	SOFA	sequence	4	SO	biological_region	TR_V_Gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002137	"A variable gene that rearranges at the DNA level and codes the variable region of the variable domain of aT-cell receptor chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	4003090	SOFA	SOFA	sequence	5	SO	region	TR_V_Gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002137	"A variable gene that rearranges at the DNA level and codes the variable region of the variable domain of aT-cell receptor chain." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html, IGMT:http\\://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php]	4967220	SOFA	SOFA	sequence	6	SO	sequence_feature	TR_V_Gene
SO:0002138	\N	\N	"A transcript feature that has been predicted but is not yet validated." [SO:ke]	SO:0002138	"A transcript feature that has been predicted but is not yet validated." [SO:ke]	46997	\N	\N	sequence	0	SO	predicted_transcript	predicted_transcript
SO:0000673	SO:0002138	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002138	"A transcript feature that has been predicted but is not yet validated." [SO:ke]	491809	\N	SOFA	sequence	1	SO	transcript	predicted_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002138	"A transcript feature that has been predicted but is not yet validated." [SO:ke]	1074489	SOFA	SOFA	sequence	2	SO	gene_member_region	predicted_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002138	"A transcript feature that has been predicted but is not yet validated." [SO:ke]	1905657	SOFA	SOFA	sequence	3	SO	biological_region	predicted_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002138	"A transcript feature that has been predicted but is not yet validated." [SO:ke]	2930082	SOFA	SOFA	sequence	4	SO	region	predicted_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002138	"A transcript feature that has been predicted but is not yet validated." [SO:ke]	4003091	SOFA	SOFA	sequence	5	SO	sequence_feature	predicted_transcript
SO:0002139	\N	\N	"This is used for non-spliced EST clusters that have polyA features. This category has been specifically created for the ENCODE project to highlight regions that could indicate the presence of protein coding genes that require experimental validation, either by 5' RACE or RT-PCR to extend the transcripts, or by confirming expression of the putatively-encoded peptide with specific antibodies." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002139	"This is used for non-spliced EST clusters that have polyA features. This category has been specifically created for the ENCODE project to highlight regions that could indicate the presence of protein coding genes that require experimental validation, either by 5' RACE or RT-PCR to extend the transcripts, or by confirming expression of the putatively-encoded peptide with specific antibodies." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	46998	\N	\N	sequence	0	SO	unconfirmed_transcript	unconfirmed_transcript
SO:0002138	SO:0002139	\N	"A transcript feature that has been predicted but is not yet validated." [SO:ke]	SO:0002139	"This is used for non-spliced EST clusters that have polyA features. This category has been specifically created for the ENCODE project to highlight regions that could indicate the presence of protein coding genes that require experimental validation, either by 5' RACE or RT-PCR to extend the transcripts, or by confirming expression of the putatively-encoded peptide with specific antibodies." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	491810	\N	\N	sequence	1	SO	predicted_transcript	unconfirmed_transcript
SO:0000673	SO:0002138	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002139	"This is used for non-spliced EST clusters that have polyA features. This category has been specifically created for the ENCODE project to highlight regions that could indicate the presence of protein coding genes that require experimental validation, either by 5' RACE or RT-PCR to extend the transcripts, or by confirming expression of the putatively-encoded peptide with specific antibodies." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1074490	\N	SOFA	sequence	2	SO	transcript	unconfirmed_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002139	"This is used for non-spliced EST clusters that have polyA features. This category has been specifically created for the ENCODE project to highlight regions that could indicate the presence of protein coding genes that require experimental validation, either by 5' RACE or RT-PCR to extend the transcripts, or by confirming expression of the putatively-encoded peptide with specific antibodies." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	1905658	SOFA	SOFA	sequence	3	SO	gene_member_region	unconfirmed_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002139	"This is used for non-spliced EST clusters that have polyA features. This category has been specifically created for the ENCODE project to highlight regions that could indicate the presence of protein coding genes that require experimental validation, either by 5' RACE or RT-PCR to extend the transcripts, or by confirming expression of the putatively-encoded peptide with specific antibodies." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	2930083	SOFA	SOFA	sequence	4	SO	biological_region	unconfirmed_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002139	"This is used for non-spliced EST clusters that have polyA features. This category has been specifically created for the ENCODE project to highlight regions that could indicate the presence of protein coding genes that require experimental validation, either by 5' RACE or RT-PCR to extend the transcripts, or by confirming expression of the putatively-encoded peptide with specific antibodies." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4003092	SOFA	SOFA	sequence	5	SO	region	unconfirmed_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002139	"This is used for non-spliced EST clusters that have polyA features. This category has been specifically created for the ENCODE project to highlight regions that could indicate the presence of protein coding genes that require experimental validation, either by 5' RACE or RT-PCR to extend the transcripts, or by confirming expression of the putatively-encoded peptide with specific antibodies." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	4967221	SOFA	SOFA	sequence	6	SO	sequence_feature	unconfirmed_transcript
SO:0002140	\N	\N	"An origin of replication that initiates early in S phase." [PMID:23348837, PMID:9115207]	SO:0002140	"An origin of replication that initiates early in S phase." [PMID:23348837, PMID:9115207]	46999	\N	\N	sequence	0	SO	early_origin_of_replication	early_origin_of_replication
SO:0000296	SO:0002140	\N	"The origin of replication; starting site for duplication of a nucleic acid molecule to give two identical copies." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0002140	"An origin of replication that initiates early in S phase." [PMID:23348837, PMID:9115207]	491811	\N	SOFA	sequence	1	SO	origin_of_replication	early_origin_of_replication
SO:0001235	SO:0000296	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0002140	"An origin of replication that initiates early in S phase." [PMID:23348837, PMID:9115207]	1074491	SOFA	SOFA	sequence	2	SO	replicon	early_origin_of_replication
SO:0001411	SO:0000296	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002140	"An origin of replication that initiates early in S phase." [PMID:23348837, PMID:9115207]	1074492	SOFA	SOFA	sequence	2	SO	biological_region	early_origin_of_replication
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002140	"An origin of replication that initiates early in S phase." [PMID:23348837, PMID:9115207]	1905659	SOFA	SOFA	sequence	3	SO	biological_region	early_origin_of_replication
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002140	"An origin of replication that initiates early in S phase." [PMID:23348837, PMID:9115207]	2930084	SOFA	SOFA	sequence	4	SO	region	early_origin_of_replication
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002140	"An origin of replication that initiates early in S phase." [PMID:23348837, PMID:9115207]	3174030	SOFA	SOFA	sequence	5	SO	sequence_feature	early_origin_of_replication
SO:0002141	\N	\N	"An origin of replication that initiates late in S phase." [PMID:23348837, PMID:9115207]	SO:0002141	"An origin of replication that initiates late in S phase." [PMID:23348837, PMID:9115207]	47000	\N	\N	sequence	0	SO	late_origin_of_replication	late_origin_of_replication
SO:0000296	SO:0002141	\N	"The origin of replication; starting site for duplication of a nucleic acid molecule to give two identical copies." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0002141	"An origin of replication that initiates late in S phase." [PMID:23348837, PMID:9115207]	491812	\N	SOFA	sequence	1	SO	origin_of_replication	late_origin_of_replication
SO:0001235	SO:0000296	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0002141	"An origin of replication that initiates late in S phase." [PMID:23348837, PMID:9115207]	1074493	SOFA	SOFA	sequence	2	SO	replicon	late_origin_of_replication
SO:0001411	SO:0000296	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002141	"An origin of replication that initiates late in S phase." [PMID:23348837, PMID:9115207]	1074494	SOFA	SOFA	sequence	2	SO	biological_region	late_origin_of_replication
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002141	"An origin of replication that initiates late in S phase." [PMID:23348837, PMID:9115207]	1905661	SOFA	SOFA	sequence	3	SO	biological_region	late_origin_of_replication
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002141	"An origin of replication that initiates late in S phase." [PMID:23348837, PMID:9115207]	2930086	SOFA	SOFA	sequence	4	SO	region	late_origin_of_replication
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002141	"An origin of replication that initiates late in S phase." [PMID:23348837, PMID:9115207]	3174031	SOFA	SOFA	sequence	5	SO	sequence_feature	late_origin_of_replication
SO:0002142	\N	\N	"A histone 2A modification where the modification is the acetylation of the residue." [ISBN:0815341059]	SO:0002142	"A histone 2A modification where the modification is the acetylation of the residue." [ISBN:0815341059]	47001	\N	\N	sequence	0	SO	histone_2A_acetylation_site	histone_2A_acetylation_site
SO:0001702	SO:0002142	\N	"A histone modification where the modification is the acylation of the residue." [SO:ke]	SO:0002142	"A histone 2A modification where the modification is the acetylation of the residue." [ISBN:0815341059]	491813	\N	\N	sequence	1	SO	histone_acetylation_site	histone_2A_acetylation_site
SO:0001700	SO:0001702	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0002142	"A histone 2A modification where the modification is the acetylation of the residue." [ISBN:0815341059]	1074495	\N	\N	sequence	2	SO	histone_modification	histone_2A_acetylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0002142	"A histone 2A modification where the modification is the acetylation of the residue." [ISBN:0815341059]	1905663	\N	biosapiens	sequence	3	SO	post_translationally_modified_region	histone_2A_acetylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0002142	"A histone 2A modification where the modification is the acetylation of the residue." [ISBN:0815341059]	1905664	\N	SOFA	sequence	3	SO	epigenetically_modified_region	histone_2A_acetylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0002142	"A histone 2A modification where the modification is the acetylation of the residue." [ISBN:0815341059]	2930088	biosapiens	biosapiens	sequence	4	SO	biochemical_region_of_peptide	histone_2A_acetylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002142	"A histone 2A modification where the modification is the acetylation of the residue." [ISBN:0815341059]	2930089	SOFA	SOFA	sequence	4	SO	biological_region	histone_2A_acetylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0002142	"A histone 2A modification where the modification is the acetylation of the residue." [ISBN:0815341059]	4003093	biosapiens	biosapiens	sequence	5	SO	polypeptide_motif	histone_2A_acetylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002142	"A histone 2A modification where the modification is the acetylation of the residue." [ISBN:0815341059]	6948207	SOFA	SOFA	sequence	10	SO	region	histone_2A_acetylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0002142	"A histone 2A modification where the modification is the acetylation of the residue." [ISBN:0815341059]	4967222	biosapiens	biosapiens	sequence	6	SO	polypeptide_conserved_region	histone_2A_acetylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002142	"A histone 2A modification where the modification is the acetylation of the residue." [ISBN:0815341059]	7029801	SOFA	SOFA	sequence	11	SO	sequence_feature	histone_2A_acetylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0002142	"A histone 2A modification where the modification is the acetylation of the residue." [ISBN:0815341059]	5741694	biosapiens	biosapiens,SOFA	sequence	7	SO	polypeptide_region	histone_2A_acetylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0002142	"A histone 2A modification where the modification is the acetylation of the residue." [ISBN:0815341059]	6311337	biosapiens,SOFA	SOFA	sequence	8	SO	polypeptide	histone_2A_acetylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002142	"A histone 2A modification where the modification is the acetylation of the residue." [ISBN:0815341059]	6311338	biosapiens,SOFA	SOFA	sequence	8	SO	biological_region	histone_2A_acetylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002142	"A histone 2A modification where the modification is the acetylation of the residue." [ISBN:0815341059]	6699547	SOFA	SOFA	sequence	9	SO	biological_region	histone_2A_acetylation_site
SO:0002143	\N	\N	"A histone 2B modification where the modification is the acetylation of the residue." [ISBN:0815341059]	SO:0002143	"A histone 2B modification where the modification is the acetylation of the residue." [ISBN:0815341059]	47002	\N	\N	sequence	0	SO	histone_2B_acetylation_site	histone_2B_acetylation_site
SO:0001702	SO:0002143	\N	"A histone modification where the modification is the acylation of the residue." [SO:ke]	SO:0002143	"A histone 2B modification where the modification is the acetylation of the residue." [ISBN:0815341059]	491814	\N	\N	sequence	1	SO	histone_acetylation_site	histone_2B_acetylation_site
SO:0001700	SO:0001702	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0002143	"A histone 2B modification where the modification is the acetylation of the residue." [ISBN:0815341059]	1074496	\N	\N	sequence	2	SO	histone_modification	histone_2B_acetylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0002143	"A histone 2B modification where the modification is the acetylation of the residue." [ISBN:0815341059]	1905665	\N	biosapiens	sequence	3	SO	post_translationally_modified_region	histone_2B_acetylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0002143	"A histone 2B modification where the modification is the acetylation of the residue." [ISBN:0815341059]	1905666	\N	SOFA	sequence	3	SO	epigenetically_modified_region	histone_2B_acetylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0002143	"A histone 2B modification where the modification is the acetylation of the residue." [ISBN:0815341059]	2930090	biosapiens	biosapiens	sequence	4	SO	biochemical_region_of_peptide	histone_2B_acetylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002143	"A histone 2B modification where the modification is the acetylation of the residue." [ISBN:0815341059]	2930091	SOFA	SOFA	sequence	4	SO	biological_region	histone_2B_acetylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0002143	"A histone 2B modification where the modification is the acetylation of the residue." [ISBN:0815341059]	4003095	biosapiens	biosapiens	sequence	5	SO	polypeptide_motif	histone_2B_acetylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002143	"A histone 2B modification where the modification is the acetylation of the residue." [ISBN:0815341059]	6948208	SOFA	SOFA	sequence	10	SO	region	histone_2B_acetylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0002143	"A histone 2B modification where the modification is the acetylation of the residue." [ISBN:0815341059]	4967224	biosapiens	biosapiens	sequence	6	SO	polypeptide_conserved_region	histone_2B_acetylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002143	"A histone 2B modification where the modification is the acetylation of the residue." [ISBN:0815341059]	7029802	SOFA	SOFA	sequence	11	SO	sequence_feature	histone_2B_acetylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0002143	"A histone 2B modification where the modification is the acetylation of the residue." [ISBN:0815341059]	5741695	biosapiens	biosapiens,SOFA	sequence	7	SO	polypeptide_region	histone_2B_acetylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0002143	"A histone 2B modification where the modification is the acetylation of the residue." [ISBN:0815341059]	6311339	biosapiens,SOFA	SOFA	sequence	8	SO	polypeptide	histone_2B_acetylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002143	"A histone 2B modification where the modification is the acetylation of the residue." [ISBN:0815341059]	6311340	biosapiens,SOFA	SOFA	sequence	8	SO	biological_region	histone_2B_acetylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002143	"A histone 2B modification where the modification is the acetylation of the residue." [ISBN:0815341059]	6699549	SOFA	SOFA	sequence	9	SO	biological_region	histone_2B_acetylation_site
SO:0002144	\N	\N	"A histone 2AZ modification where the modification is the acetylation of the residue." [PMID:19385636, PMID:24316985, PMID:27087541]	SO:0002144	"A histone 2AZ modification where the modification is the acetylation of the residue." [PMID:19385636, PMID:24316985, PMID:27087541]	47003	\N	\N	sequence	0	SO	histone_2AZ_acetylation_site	histone_2AZ_acetylation_site
SO:0002142	SO:0002144	\N	"A histone 2A modification where the modification is the acetylation of the residue." [ISBN:0815341059]	SO:0002144	"A histone 2AZ modification where the modification is the acetylation of the residue." [PMID:19385636, PMID:24316985, PMID:27087541]	491815	\N	\N	sequence	1	SO	histone_2A_acetylation_site	histone_2AZ_acetylation_site
SO:0001702	SO:0002142	\N	"A histone modification where the modification is the acylation of the residue." [SO:ke]	SO:0002144	"A histone 2AZ modification where the modification is the acetylation of the residue." [PMID:19385636, PMID:24316985, PMID:27087541]	1074497	\N	\N	sequence	2	SO	histone_acetylation_site	histone_2AZ_acetylation_site
SO:0001700	SO:0001702	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0002144	"A histone 2AZ modification where the modification is the acetylation of the residue." [PMID:19385636, PMID:24316985, PMID:27087541]	1905667	\N	\N	sequence	3	SO	histone_modification	histone_2AZ_acetylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0002144	"A histone 2AZ modification where the modification is the acetylation of the residue." [PMID:19385636, PMID:24316985, PMID:27087541]	2930092	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	histone_2AZ_acetylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0002144	"A histone 2AZ modification where the modification is the acetylation of the residue." [PMID:19385636, PMID:24316985, PMID:27087541]	2930093	\N	SOFA	sequence	4	SO	epigenetically_modified_region	histone_2AZ_acetylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0002144	"A histone 2AZ modification where the modification is the acetylation of the residue." [PMID:19385636, PMID:24316985, PMID:27087541]	4003097	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	histone_2AZ_acetylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002144	"A histone 2AZ modification where the modification is the acetylation of the residue." [PMID:19385636, PMID:24316985, PMID:27087541]	4003098	SOFA	SOFA	sequence	5	SO	biological_region	histone_2AZ_acetylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0002144	"A histone 2AZ modification where the modification is the acetylation of the residue." [PMID:19385636, PMID:24316985, PMID:27087541]	4967226	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	histone_2AZ_acetylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002144	"A histone 2AZ modification where the modification is the acetylation of the residue." [PMID:19385636, PMID:24316985, PMID:27087541]	7105163	SOFA	SOFA	sequence	11	SO	region	histone_2AZ_acetylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0002144	"A histone 2AZ modification where the modification is the acetylation of the residue." [PMID:19385636, PMID:24316985, PMID:27087541]	5741696	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	histone_2AZ_acetylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002144	"A histone 2AZ modification where the modification is the acetylation of the residue." [PMID:19385636, PMID:24316985, PMID:27087541]	7181738	SOFA	SOFA	sequence	12	SO	sequence_feature	histone_2AZ_acetylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0002144	"A histone 2AZ modification where the modification is the acetylation of the residue." [PMID:19385636, PMID:24316985, PMID:27087541]	6311341	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	histone_2AZ_acetylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0002144	"A histone 2AZ modification where the modification is the acetylation of the residue." [PMID:19385636, PMID:24316985, PMID:27087541]	6699551	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	histone_2AZ_acetylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002144	"A histone 2AZ modification where the modification is the acetylation of the residue." [PMID:19385636, PMID:24316985, PMID:27087541]	6699552	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	histone_2AZ_acetylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002144	"A histone 2AZ modification where the modification is the acetylation of the residue." [PMID:19385636, PMID:24316985, PMID:27087541]	6948209	SOFA	SOFA	sequence	10	SO	biological_region	histone_2AZ_acetylation_site
SO:0002145	\N	\N	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	SO:0002145	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	47004	\N	\N	sequence	0	SO	H2AZK4_acetylation_site	H2AZK4_acetylation_site
SO:0002144	SO:0002145	\N	"A histone 2AZ modification where the modification is the acetylation of the residue." [PMID:19385636, PMID:24316985, PMID:27087541]	SO:0002145	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	491816	\N	\N	sequence	1	SO	histone_2AZ_acetylation_site	H2AZK4_acetylation_site
SO:0002142	SO:0002144	\N	"A histone 2A modification where the modification is the acetylation of the residue." [ISBN:0815341059]	SO:0002145	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	1074498	\N	\N	sequence	2	SO	histone_2A_acetylation_site	H2AZK4_acetylation_site
SO:0001702	SO:0002142	\N	"A histone modification where the modification is the acylation of the residue." [SO:ke]	SO:0002145	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	1905668	\N	\N	sequence	3	SO	histone_acetylation_site	H2AZK4_acetylation_site
SO:0001700	SO:0001702	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0002145	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	2930094	\N	\N	sequence	4	SO	histone_modification	H2AZK4_acetylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0002145	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	4003099	\N	biosapiens	sequence	5	SO	post_translationally_modified_region	H2AZK4_acetylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0002145	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	4003100	\N	SOFA	sequence	5	SO	epigenetically_modified_region	H2AZK4_acetylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0002145	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	4967228	biosapiens	biosapiens	sequence	6	SO	biochemical_region_of_peptide	H2AZK4_acetylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002145	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	4967229	SOFA	SOFA	sequence	6	SO	biological_region	H2AZK4_acetylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0002145	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	5741698	biosapiens	biosapiens	sequence	7	SO	polypeptide_motif	H2AZK4_acetylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002145	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	7209850	SOFA	SOFA	sequence	12	SO	region	H2AZK4_acetylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0002145	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	6311342	biosapiens	biosapiens	sequence	8	SO	polypeptide_conserved_region	H2AZK4_acetylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002145	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	7279082	SOFA	SOFA	sequence	13	SO	sequence_feature	H2AZK4_acetylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0002145	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	6699553	biosapiens	biosapiens,SOFA	sequence	9	SO	polypeptide_region	H2AZK4_acetylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0002145	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	6948211	biosapiens,SOFA	SOFA	sequence	10	SO	polypeptide	H2AZK4_acetylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002145	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	6948212	biosapiens,SOFA	SOFA	sequence	10	SO	biological_region	H2AZK4_acetylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002145	"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	7105164	SOFA	SOFA	sequence	11	SO	biological_region	H2AZK4_acetylation_site
SO:0002146	\N	\N	"A kind of histone modification site, whereby the 7th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	SO:0002146	"A kind of histone modification site, whereby the 7th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	47005	\N	\N	sequence	0	SO	H2AZK7_acetylation_site	H2AZK7_acetylation_site
SO:0002144	SO:0002146	\N	"A histone 2AZ modification where the modification is the acetylation of the residue." [PMID:19385636, PMID:24316985, PMID:27087541]	SO:0002146	"A kind of histone modification site, whereby the 7th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	491817	\N	\N	sequence	1	SO	histone_2AZ_acetylation_site	H2AZK7_acetylation_site
SO:0002142	SO:0002144	\N	"A histone 2A modification where the modification is the acetylation of the residue." [ISBN:0815341059]	SO:0002146	"A kind of histone modification site, whereby the 7th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	1074499	\N	\N	sequence	2	SO	histone_2A_acetylation_site	H2AZK7_acetylation_site
SO:0001702	SO:0002142	\N	"A histone modification where the modification is the acylation of the residue." [SO:ke]	SO:0002146	"A kind of histone modification site, whereby the 7th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	1905669	\N	\N	sequence	3	SO	histone_acetylation_site	H2AZK7_acetylation_site
SO:0001700	SO:0001702	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0002146	"A kind of histone modification site, whereby the 7th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	2930095	\N	\N	sequence	4	SO	histone_modification	H2AZK7_acetylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0002146	"A kind of histone modification site, whereby the 7th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	4003101	\N	biosapiens	sequence	5	SO	post_translationally_modified_region	H2AZK7_acetylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0002146	"A kind of histone modification site, whereby the 7th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	4003102	\N	SOFA	sequence	5	SO	epigenetically_modified_region	H2AZK7_acetylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0002146	"A kind of histone modification site, whereby the 7th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	4967230	biosapiens	biosapiens	sequence	6	SO	biochemical_region_of_peptide	H2AZK7_acetylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002146	"A kind of histone modification site, whereby the 7th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	4967231	SOFA	SOFA	sequence	6	SO	biological_region	H2AZK7_acetylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0002146	"A kind of histone modification site, whereby the 7th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	5741700	biosapiens	biosapiens	sequence	7	SO	polypeptide_motif	H2AZK7_acetylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002146	"A kind of histone modification site, whereby the 7th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	7209851	SOFA	SOFA	sequence	12	SO	region	H2AZK7_acetylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0002146	"A kind of histone modification site, whereby the 7th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	6311344	biosapiens	biosapiens	sequence	8	SO	polypeptide_conserved_region	H2AZK7_acetylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002146	"A kind of histone modification site, whereby the 7th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	7279083	SOFA	SOFA	sequence	13	SO	sequence_feature	H2AZK7_acetylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0002146	"A kind of histone modification site, whereby the 7th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	6699554	biosapiens	biosapiens,SOFA	sequence	9	SO	polypeptide_region	H2AZK7_acetylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0002146	"A kind of histone modification site, whereby the 7th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	6948213	biosapiens,SOFA	SOFA	sequence	10	SO	polypeptide	H2AZK7_acetylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002146	"A kind of histone modification site, whereby the 7th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	6948214	biosapiens,SOFA	SOFA	sequence	10	SO	biological_region	H2AZK7_acetylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002146	"A kind of histone modification site, whereby the 7th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	7105166	SOFA	SOFA	sequence	11	SO	biological_region	H2AZK7_acetylation_site
SO:0002147	\N	\N	"A kind of histone modification site, whereby the 11th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	SO:0002147	"A kind of histone modification site, whereby the 11th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	47006	\N	\N	sequence	0	SO	H2AZK11_acetylation_site	H2AZK11_acetylation_site
SO:0002144	SO:0002147	\N	"A histone 2AZ modification where the modification is the acetylation of the residue." [PMID:19385636, PMID:24316985, PMID:27087541]	SO:0002147	"A kind of histone modification site, whereby the 11th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	491818	\N	\N	sequence	1	SO	histone_2AZ_acetylation_site	H2AZK11_acetylation_site
SO:0002142	SO:0002144	\N	"A histone 2A modification where the modification is the acetylation of the residue." [ISBN:0815341059]	SO:0002147	"A kind of histone modification site, whereby the 11th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	1074500	\N	\N	sequence	2	SO	histone_2A_acetylation_site	H2AZK11_acetylation_site
SO:0001702	SO:0002142	\N	"A histone modification where the modification is the acylation of the residue." [SO:ke]	SO:0002147	"A kind of histone modification site, whereby the 11th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	1905670	\N	\N	sequence	3	SO	histone_acetylation_site	H2AZK11_acetylation_site
SO:0001700	SO:0001702	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0002147	"A kind of histone modification site, whereby the 11th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	2930096	\N	\N	sequence	4	SO	histone_modification	H2AZK11_acetylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0002147	"A kind of histone modification site, whereby the 11th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	4003103	\N	biosapiens	sequence	5	SO	post_translationally_modified_region	H2AZK11_acetylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0002147	"A kind of histone modification site, whereby the 11th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	4003104	\N	SOFA	sequence	5	SO	epigenetically_modified_region	H2AZK11_acetylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0002147	"A kind of histone modification site, whereby the 11th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	4967232	biosapiens	biosapiens	sequence	6	SO	biochemical_region_of_peptide	H2AZK11_acetylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002147	"A kind of histone modification site, whereby the 11th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	4967233	SOFA	SOFA	sequence	6	SO	biological_region	H2AZK11_acetylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0002147	"A kind of histone modification site, whereby the 11th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	5741702	biosapiens	biosapiens	sequence	7	SO	polypeptide_motif	H2AZK11_acetylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002147	"A kind of histone modification site, whereby the 11th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	7209852	SOFA	SOFA	sequence	12	SO	region	H2AZK11_acetylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0002147	"A kind of histone modification site, whereby the 11th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	6311346	biosapiens	biosapiens	sequence	8	SO	polypeptide_conserved_region	H2AZK11_acetylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002147	"A kind of histone modification site, whereby the 11th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	7279084	SOFA	SOFA	sequence	13	SO	sequence_feature	H2AZK11_acetylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0002147	"A kind of histone modification site, whereby the 11th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	6699555	biosapiens	biosapiens,SOFA	sequence	9	SO	polypeptide_region	H2AZK11_acetylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0002147	"A kind of histone modification site, whereby the 11th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	6948215	biosapiens,SOFA	SOFA	sequence	10	SO	polypeptide	H2AZK11_acetylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002147	"A kind of histone modification site, whereby the 11th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	6948216	biosapiens,SOFA	SOFA	sequence	10	SO	biological_region	H2AZK11_acetylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002147	"A kind of histone modification site, whereby the 11th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	7105168	SOFA	SOFA	sequence	11	SO	biological_region	H2AZK11_acetylation_site
SO:0002148	\N	\N	"A kind of histone modification site, whereby the 13th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	SO:0002148	"A kind of histone modification site, whereby the 13th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	47007	\N	\N	sequence	0	SO	H2AZK13_acetylation_site	H2AZK13_acetylation_site
SO:0002144	SO:0002148	\N	"A histone 2AZ modification where the modification is the acetylation of the residue." [PMID:19385636, PMID:24316985, PMID:27087541]	SO:0002148	"A kind of histone modification site, whereby the 13th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	491819	\N	\N	sequence	1	SO	histone_2AZ_acetylation_site	H2AZK13_acetylation_site
SO:0002142	SO:0002144	\N	"A histone 2A modification where the modification is the acetylation of the residue." [ISBN:0815341059]	SO:0002148	"A kind of histone modification site, whereby the 13th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	1074501	\N	\N	sequence	2	SO	histone_2A_acetylation_site	H2AZK13_acetylation_site
SO:0001702	SO:0002142	\N	"A histone modification where the modification is the acylation of the residue." [SO:ke]	SO:0002148	"A kind of histone modification site, whereby the 13th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	1905671	\N	\N	sequence	3	SO	histone_acetylation_site	H2AZK13_acetylation_site
SO:0001700	SO:0001702	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0002148	"A kind of histone modification site, whereby the 13th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	2930097	\N	\N	sequence	4	SO	histone_modification	H2AZK13_acetylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0002148	"A kind of histone modification site, whereby the 13th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	4003105	\N	biosapiens	sequence	5	SO	post_translationally_modified_region	H2AZK13_acetylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0002148	"A kind of histone modification site, whereby the 13th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	4003106	\N	SOFA	sequence	5	SO	epigenetically_modified_region	H2AZK13_acetylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0002148	"A kind of histone modification site, whereby the 13th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	4967234	biosapiens	biosapiens	sequence	6	SO	biochemical_region_of_peptide	H2AZK13_acetylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002148	"A kind of histone modification site, whereby the 13th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	4967235	SOFA	SOFA	sequence	6	SO	biological_region	H2AZK13_acetylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0002148	"A kind of histone modification site, whereby the 13th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	5741704	biosapiens	biosapiens	sequence	7	SO	polypeptide_motif	H2AZK13_acetylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002148	"A kind of histone modification site, whereby the 13th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	7209853	SOFA	SOFA	sequence	12	SO	region	H2AZK13_acetylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0002148	"A kind of histone modification site, whereby the 13th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	6311348	biosapiens	biosapiens	sequence	8	SO	polypeptide_conserved_region	H2AZK13_acetylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002148	"A kind of histone modification site, whereby the 13th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	7279085	SOFA	SOFA	sequence	13	SO	sequence_feature	H2AZK13_acetylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0002148	"A kind of histone modification site, whereby the 13th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	6699556	biosapiens	biosapiens,SOFA	sequence	9	SO	polypeptide_region	H2AZK13_acetylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0002148	"A kind of histone modification site, whereby the 13th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	6948217	biosapiens,SOFA	SOFA	sequence	10	SO	polypeptide	H2AZK13_acetylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002148	"A kind of histone modification site, whereby the 13th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	6948218	biosapiens,SOFA	SOFA	sequence	10	SO	biological_region	H2AZK13_acetylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002148	"A kind of histone modification site, whereby the 13th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	7105170	SOFA	SOFA	sequence	11	SO	biological_region	H2AZK13_acetylation_site
SO:0002149	\N	\N	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	SO:0002149	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	47008	\N	\N	sequence	0	SO	H2AZK15_acetylation_site	H2AZK15_acetylation_site
SO:0002144	SO:0002149	\N	"A histone 2AZ modification where the modification is the acetylation of the residue." [PMID:19385636, PMID:24316985, PMID:27087541]	SO:0002149	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	491820	\N	\N	sequence	1	SO	histone_2AZ_acetylation_site	H2AZK15_acetylation_site
SO:0002142	SO:0002144	\N	"A histone 2A modification where the modification is the acetylation of the residue." [ISBN:0815341059]	SO:0002149	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	1074502	\N	\N	sequence	2	SO	histone_2A_acetylation_site	H2AZK15_acetylation_site
SO:0001702	SO:0002142	\N	"A histone modification where the modification is the acylation of the residue." [SO:ke]	SO:0002149	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	1905672	\N	\N	sequence	3	SO	histone_acetylation_site	H2AZK15_acetylation_site
SO:0001700	SO:0001702	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0002149	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	2930098	\N	\N	sequence	4	SO	histone_modification	H2AZK15_acetylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0002149	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	4003107	\N	biosapiens	sequence	5	SO	post_translationally_modified_region	H2AZK15_acetylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0002149	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	4003108	\N	SOFA	sequence	5	SO	epigenetically_modified_region	H2AZK15_acetylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0002149	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	4967236	biosapiens	biosapiens	sequence	6	SO	biochemical_region_of_peptide	H2AZK15_acetylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002149	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	4967237	SOFA	SOFA	sequence	6	SO	biological_region	H2AZK15_acetylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0002149	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	5741706	biosapiens	biosapiens	sequence	7	SO	polypeptide_motif	H2AZK15_acetylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002149	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	7209854	SOFA	SOFA	sequence	12	SO	region	H2AZK15_acetylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0002149	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	6311350	biosapiens	biosapiens	sequence	8	SO	polypeptide_conserved_region	H2AZK15_acetylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002149	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	7279086	SOFA	SOFA	sequence	13	SO	sequence_feature	H2AZK15_acetylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0002149	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	6699557	biosapiens	biosapiens,SOFA	sequence	9	SO	polypeptide_region	H2AZK15_acetylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0002149	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	6948219	biosapiens,SOFA	SOFA	sequence	10	SO	polypeptide	H2AZK15_acetylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002149	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	6948220	biosapiens,SOFA	SOFA	sequence	10	SO	biological_region	H2AZK15_acetylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002149	"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2AZ histone protein is acetylated." [PMID:19385636, PMID:24316985, PMID:27087541]	7105172	SOFA	SOFA	sequence	11	SO	biological_region	H2AZK15_acetylation_site
SO:0002150	\N	\N	"A uORF beginning with the canonical start codon AUG." [PMID:26684391, PMID:27313038]	SO:0002150	"A uORF beginning with the canonical start codon AUG." [PMID:26684391, PMID:27313038]	47009	\N	\N	sequence	0	SO	AUG_initiated_uORF	AUG_initiated_uORF
SO:0002027	SO:0002150	\N	"A short open reading frame that is found in the 5' untranslated region of an mRNA and plays a role in translational regulation." [PMID:12890013, PMID:16153175, POMBASE:mah]	SO:0002150	"A uORF beginning with the canonical start codon AUG." [PMID:26684391, PMID:27313038]	491821	\N	\N	sequence	1	SO	uORF	AUG_initiated_uORF
SO:0000236	SO:0002027	\N	"The in-frame interval between the stop codons of a reading frame which when read as sequential triplets, has the potential of encoding a sequential string of amino acids. TER(NNN)nTER." [SGD:rb, SO:ma]	SO:0002150	"A uORF beginning with the canonical start codon AUG." [PMID:26684391, PMID:27313038]	1074503	\N	SOFA	sequence	2	SO	ORF	AUG_initiated_uORF
SO:0000717	SO:0000236	\N	"A nucleic acid sequence that when read as sequential triplets, has the potential of encoding a sequential string of amino acids. It need not contain the start or stop codon." [SGD:rb]	SO:0002150	"A uORF beginning with the canonical start codon AUG." [PMID:26684391, PMID:27313038]	1905673	SOFA	SOFA	sequence	3	SO	reading_frame	AUG_initiated_uORF
SO:0001410	SO:0000717	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0002150	"A uORF beginning with the canonical start codon AUG." [PMID:26684391, PMID:27313038]	2930099	SOFA	SOFA	sequence	4	SO	experimental_feature	AUG_initiated_uORF
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002150	"A uORF beginning with the canonical start codon AUG." [PMID:26684391, PMID:27313038]	4003109	SOFA	SOFA	sequence	5	SO	region	AUG_initiated_uORF
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002150	"A uORF beginning with the canonical start codon AUG." [PMID:26684391, PMID:27313038]	4967238	SOFA	SOFA	sequence	6	SO	sequence_feature	AUG_initiated_uORF
SO:0002151	\N	\N	"A uORF beginning with a codon other than AUG." [PMID:26684391, PMID:27313038]	SO:0002151	"A uORF beginning with a codon other than AUG." [PMID:26684391, PMID:27313038]	47010	\N	\N	sequence	0	SO	non_AUG_initiated_uORF	non_AUG_initiated_uORF
SO:0002027	SO:0002151	\N	"A short open reading frame that is found in the 5' untranslated region of an mRNA and plays a role in translational regulation." [PMID:12890013, PMID:16153175, POMBASE:mah]	SO:0002151	"A uORF beginning with a codon other than AUG." [PMID:26684391, PMID:27313038]	491822	\N	\N	sequence	1	SO	uORF	non_AUG_initiated_uORF
SO:0000236	SO:0002027	\N	"The in-frame interval between the stop codons of a reading frame which when read as sequential triplets, has the potential of encoding a sequential string of amino acids. TER(NNN)nTER." [SGD:rb, SO:ma]	SO:0002151	"A uORF beginning with a codon other than AUG." [PMID:26684391, PMID:27313038]	1074504	\N	SOFA	sequence	2	SO	ORF	non_AUG_initiated_uORF
SO:0000717	SO:0000236	\N	"A nucleic acid sequence that when read as sequential triplets, has the potential of encoding a sequential string of amino acids. It need not contain the start or stop codon." [SGD:rb]	SO:0002151	"A uORF beginning with a codon other than AUG." [PMID:26684391, PMID:27313038]	1905674	SOFA	SOFA	sequence	3	SO	reading_frame	non_AUG_initiated_uORF
SO:0001410	SO:0000717	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0002151	"A uORF beginning with a codon other than AUG." [PMID:26684391, PMID:27313038]	2930100	SOFA	SOFA	sequence	4	SO	experimental_feature	non_AUG_initiated_uORF
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002151	"A uORF beginning with a codon other than AUG." [PMID:26684391, PMID:27313038]	4003110	SOFA	SOFA	sequence	5	SO	region	non_AUG_initiated_uORF
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002151	"A uORF beginning with a codon other than AUG." [PMID:26684391, PMID:27313038]	4967239	SOFA	SOFA	sequence	6	SO	sequence_feature	non_AUG_initiated_uORF
SO:0002152	\N	\N	"A variant that falls downstream of a transcript, but within the genic region of the gene due to alternately transcribed isoforms." [NCBI:dm, SO:ke]	SO:0002152	"A variant that falls downstream of a transcript, but within the genic region of the gene due to alternately transcribed isoforms." [NCBI:dm, SO:ke]	47011	\N	\N	sequence	0	SO	genic_downstream_transcript_variant	genic_downstream_transcript_variant
SO:0001564	SO:0002152	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0002152	"A variant that falls downstream of a transcript, but within the genic region of the gene due to alternately transcribed isoforms." [NCBI:dm, SO:ke]	491823	\N	\N	sequence	1	SO	gene_variant	genic_downstream_transcript_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002152	"A variant that falls downstream of a transcript, but within the genic region of the gene due to alternately transcribed isoforms." [NCBI:dm, SO:ke]	1074505	\N	\N	sequence	2	SO	feature_variant	genic_downstream_transcript_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002152	"A variant that falls downstream of a transcript, but within the genic region of the gene due to alternately transcribed isoforms." [NCBI:dm, SO:ke]	1905675	\N	\N	sequence	3	SO	structural_variant	genic_downstream_transcript_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002152	"A variant that falls downstream of a transcript, but within the genic region of the gene due to alternately transcribed isoforms." [NCBI:dm, SO:ke]	2930101	\N	\N	sequence	4	SO	sequence_variant	genic_downstream_transcript_variant
SO:0002153	\N	\N	"A variant that falls upstream of a transcript, but within the genic region of the gene due to alternately transcribed isoforms." [NCBI:dm, SO:ke]	SO:0002153	"A variant that falls upstream of a transcript, but within the genic region of the gene due to alternately transcribed isoforms." [NCBI:dm, SO:ke]	47012	\N	\N	sequence	0	SO	genic_upstream_transcript_variant	genic_upstream_transcript_variant
SO:0001564	SO:0002153	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0002153	"A variant that falls upstream of a transcript, but within the genic region of the gene due to alternately transcribed isoforms." [NCBI:dm, SO:ke]	491824	\N	\N	sequence	1	SO	gene_variant	genic_upstream_transcript_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002153	"A variant that falls upstream of a transcript, but within the genic region of the gene due to alternately transcribed isoforms." [NCBI:dm, SO:ke]	1074506	\N	\N	sequence	2	SO	feature_variant	genic_upstream_transcript_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002153	"A variant that falls upstream of a transcript, but within the genic region of the gene due to alternately transcribed isoforms." [NCBI:dm, SO:ke]	1905676	\N	\N	sequence	3	SO	structural_variant	genic_upstream_transcript_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002153	"A variant that falls upstream of a transcript, but within the genic region of the gene due to alternately transcribed isoforms." [NCBI:dm, SO:ke]	2930102	\N	\N	sequence	4	SO	sequence_variant	genic_upstream_transcript_variant
SO:0002154	\N	\N	"A genomic region where there is an exchange of genetic material with another genomic region, occurring in somatic cells." [NCBI:cf, SO:ke]	SO:0002154	"A genomic region where there is an exchange of genetic material with another genomic region, occurring in somatic cells." [NCBI:cf, SO:ke]	47013	\N	\N	sequence	0	SO	mitotic_recombination_region	mitotic_recombination_region
SO:0000298	SO:0002154	\N	"" []	SO:0002154	"A genomic region where there is an exchange of genetic material with another genomic region, occurring in somatic cells." [NCBI:cf, SO:ke]	491825	\N	\N	sequence	1	SO	recombination_feature	mitotic_recombination_region
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002154	"A genomic region where there is an exchange of genetic material with another genomic region, occurring in somatic cells." [NCBI:cf, SO:ke]	1074507	\N	SOFA	sequence	2	SO	biological_region	mitotic_recombination_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002154	"A genomic region where there is an exchange of genetic material with another genomic region, occurring in somatic cells." [NCBI:cf, SO:ke]	1905677	SOFA	SOFA	sequence	3	SO	region	mitotic_recombination_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002154	"A genomic region where there is an exchange of genetic material with another genomic region, occurring in somatic cells." [NCBI:cf, SO:ke]	2930103	SOFA	SOFA	sequence	4	SO	sequence_feature	mitotic_recombination_region
SO:0002155	\N	\N	"A genomic region in which there is an exchange of genetic material as a result of the repair of meiosis-specific double strand breaks that occur during meiotic prophase." [NCBI:cf, SO:ke]	SO:0002155	"A genomic region in which there is an exchange of genetic material as a result of the repair of meiosis-specific double strand breaks that occur during meiotic prophase." [NCBI:cf, SO:ke]	47014	\N	\N	sequence	0	SO	meiotic_recombination_region	meiotic_recombination_region
SO:0000298	SO:0002155	\N	"" []	SO:0002155	"A genomic region in which there is an exchange of genetic material as a result of the repair of meiosis-specific double strand breaks that occur during meiotic prophase." [NCBI:cf, SO:ke]	491826	\N	\N	sequence	1	SO	recombination_feature	meiotic_recombination_region
SO:0001411	SO:0000298	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002155	"A genomic region in which there is an exchange of genetic material as a result of the repair of meiosis-specific double strand breaks that occur during meiotic prophase." [NCBI:cf, SO:ke]	1074508	\N	SOFA	sequence	2	SO	biological_region	meiotic_recombination_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002155	"A genomic region in which there is an exchange of genetic material as a result of the repair of meiosis-specific double strand breaks that occur during meiotic prophase." [NCBI:cf, SO:ke]	1905678	SOFA	SOFA	sequence	3	SO	region	meiotic_recombination_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002155	"A genomic region in which there is an exchange of genetic material as a result of the repair of meiosis-specific double strand breaks that occur during meiotic prophase." [NCBI:cf, SO:ke]	2930104	SOFA	SOFA	sequence	4	SO	sequence_feature	meiotic_recombination_region
SO:0002156	\N	\N	"A promoter element bound by the MADS family of transcription factors with consensus 5'-(C/T)TA(T/A)4TA(G/A)-3'." [PMID:1748287, PMID:7623803]	SO:0002156	"A promoter element bound by the MADS family of transcription factors with consensus 5'-(C/T)TA(T/A)4TA(G/A)-3'." [PMID:1748287, PMID:7623803]	47015	\N	\N	sequence	0	SO	CArG_box	CArG_box
SO:0001659	SO:0002156	\N	"" []	SO:0002156	"A promoter element bound by the MADS family of transcription factors with consensus 5'-(C/T)TA(T/A)4TA(G/A)-3'." [PMID:1748287, PMID:7623803]	491827	\N	\N	sequence	1	SO	promoter_element	CArG_box
SO:0000713	SO:0001659	\N	"A motif that is active in the DNA form of the sequence." [SO:ke]	SO:0002156	"A promoter element bound by the MADS family of transcription factors with consensus 5'-(C/T)TA(T/A)4TA(G/A)-3'." [PMID:1748287, PMID:7623803]	1074509	\N	\N	sequence	2	SO	DNA_motif	CArG_box
SO:0000714	SO:0000713	\N	"A region of nucleotide sequence corresponding to a known motif." [SO:ke]	SO:0002156	"A promoter element bound by the MADS family of transcription factors with consensus 5'-(C/T)TA(T/A)4TA(G/A)-3'." [PMID:1748287, PMID:7623803]	1905679	\N	SOFA	sequence	3	SO	nucleotide_motif	CArG_box
SO:0001683	SO:0000714	\N	"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance." [http://en.wikipedia.org/wiki/Sequence_motif]	SO:0002156	"A promoter element bound by the MADS family of transcription factors with consensus 5'-(C/T)TA(T/A)4TA(G/A)-3'." [PMID:1748287, PMID:7623803]	2930105	SOFA	SOFA	sequence	4	SO	sequence_motif	CArG_box
SO:0001411	SO:0001683	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002156	"A promoter element bound by the MADS family of transcription factors with consensus 5'-(C/T)TA(T/A)4TA(G/A)-3'." [PMID:1748287, PMID:7623803]	4003111	SOFA	SOFA	sequence	5	SO	biological_region	CArG_box
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002156	"A promoter element bound by the MADS family of transcription factors with consensus 5'-(C/T)TA(T/A)4TA(G/A)-3'." [PMID:1748287, PMID:7623803]	4967240	SOFA	SOFA	sequence	6	SO	region	CArG_box
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002156	"A promoter element bound by the MADS family of transcription factors with consensus 5'-(C/T)TA(T/A)4TA(G/A)-3'." [PMID:1748287, PMID:7623803]	5741708	SOFA	SOFA	sequence	7	SO	sequence_feature	CArG_box
SO:0002157	\N	\N	"A gene cassette array containing H+ mating type specific information." [PMID:18354497]	SO:0002157	"A gene cassette array containing H+ mating type specific information." [PMID:18354497]	47016	\N	\N	sequence	0	SO	Mat2P	Mat2P
SO:0001984	SO:0002157	\N	"A gene cassette array that corresponds to a silenced version of a mating type region." [PomBase:mah]	SO:0002157	"A gene cassette array containing H+ mating type specific information." [PMID:18354497]	491828	\N	\N	sequence	1	SO	silent_mating_type_cassette_array	Mat2P
SO:0005854	SO:0001984	\N	"An array of non-functional genes whose members, when captured by recombination form functional genes." [SO:ma]	SO:0002157	"A gene cassette array containing H+ mating type specific information." [PMID:18354497]	1074510	\N	\N	sequence	2	SO	gene_cassette_array	Mat2P
SO:0005855	SO:0005854	\N	"A collection of related genes." [SO:ma]	SO:0002157	"A gene cassette array containing H+ mating type specific information." [PMID:18354497]	1905680	\N	SOFA	sequence	3	SO	gene_group	Mat2P
SO:0001411	SO:0005855	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002157	"A gene cassette array containing H+ mating type specific information." [PMID:18354497]	2930106	SOFA	SOFA	sequence	4	SO	biological_region	Mat2P
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002157	"A gene cassette array containing H+ mating type specific information." [PMID:18354497]	4003112	SOFA	SOFA	sequence	5	SO	region	Mat2P
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002157	"A gene cassette array containing H+ mating type specific information." [PMID:18354497]	4967241	SOFA	SOFA	sequence	6	SO	sequence_feature	Mat2P
SO:0002158	\N	\N	"A gene cassette array containing H- mating type specific information." [PMID:18354497]	SO:0002158	"A gene cassette array containing H- mating type specific information." [PMID:18354497]	47017	\N	\N	sequence	0	SO	Mat3M	Mat3M
SO:0001984	SO:0002158	\N	"A gene cassette array that corresponds to a silenced version of a mating type region." [PomBase:mah]	SO:0002158	"A gene cassette array containing H- mating type specific information." [PMID:18354497]	491829	\N	\N	sequence	1	SO	silent_mating_type_cassette_array	Mat3M
SO:0005854	SO:0001984	\N	"An array of non-functional genes whose members, when captured by recombination form functional genes." [SO:ma]	SO:0002158	"A gene cassette array containing H- mating type specific information." [PMID:18354497]	1074511	\N	\N	sequence	2	SO	gene_cassette_array	Mat3M
SO:0005855	SO:0005854	\N	"A collection of related genes." [SO:ma]	SO:0002158	"A gene cassette array containing H- mating type specific information." [PMID:18354497]	1905681	\N	SOFA	sequence	3	SO	gene_group	Mat3M
SO:0001411	SO:0005855	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002158	"A gene cassette array containing H- mating type specific information." [PMID:18354497]	2930107	SOFA	SOFA	sequence	4	SO	biological_region	Mat3M
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002158	"A gene cassette array containing H- mating type specific information." [PMID:18354497]	4003113	SOFA	SOFA	sequence	5	SO	region	Mat3M
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002158	"A gene cassette array containing H- mating type specific information." [PMID:18354497]	4967242	SOFA	SOFA	sequence	6	SO	sequence_feature	Mat3M
SO:0002159	\N	\N	"A conserved Cdc48/p97 interaction motif with strict consensus sequence F[PI]GKG[TK][RK]LG[GT] and relaxed consensus sequence FXGKGX[RK]LG." [PMID:17083136, PMID:27655872]	SO:0002159	"A conserved Cdc48/p97 interaction motif with strict consensus sequence F[PI]GKG[TK][RK]LG[GT] and relaxed consensus sequence FXGKGX[RK]LG." [PMID:17083136, PMID:27655872]	47018	\N	\N	sequence	0	SO	SHP_box	SHP_box
SO:0100017	SO:0002159	\N	"A conserved motif is a short (up to 20 amino acids) region of biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0002159	"A conserved Cdc48/p97 interaction motif with strict consensus sequence F[PI]GKG[TK][RK]LG[GT] and relaxed consensus sequence FXGKGX[RK]LG." [PMID:17083136, PMID:27655872]	491830	\N	biosapiens	sequence	1	SO	polypeptide_conserved_motif	SHP_box
SO:0001067	SO:0100017	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0002159	"A conserved Cdc48/p97 interaction motif with strict consensus sequence F[PI]GKG[TK][RK]LG[GT] and relaxed consensus sequence FXGKGX[RK]LG." [PMID:17083136, PMID:27655872]	1074512	biosapiens	biosapiens	sequence	2	SO	polypeptide_motif	SHP_box
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0002159	"A conserved Cdc48/p97 interaction motif with strict consensus sequence F[PI]GKG[TK][RK]LG[GT] and relaxed consensus sequence FXGKGX[RK]LG." [PMID:17083136, PMID:27655872]	1905682	biosapiens	biosapiens	sequence	3	SO	polypeptide_conserved_region	SHP_box
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0002159	"A conserved Cdc48/p97 interaction motif with strict consensus sequence F[PI]GKG[TK][RK]LG[GT] and relaxed consensus sequence FXGKGX[RK]LG." [PMID:17083136, PMID:27655872]	2930108	biosapiens	biosapiens,SOFA	sequence	4	SO	polypeptide_region	SHP_box
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0002159	"A conserved Cdc48/p97 interaction motif with strict consensus sequence F[PI]GKG[TK][RK]LG[GT] and relaxed consensus sequence FXGKGX[RK]LG." [PMID:17083136, PMID:27655872]	4003114	biosapiens,SOFA	SOFA	sequence	5	SO	polypeptide	SHP_box
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002159	"A conserved Cdc48/p97 interaction motif with strict consensus sequence F[PI]GKG[TK][RK]LG[GT] and relaxed consensus sequence FXGKGX[RK]LG." [PMID:17083136, PMID:27655872]	4003115	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	SHP_box
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002159	"A conserved Cdc48/p97 interaction motif with strict consensus sequence F[PI]GKG[TK][RK]LG[GT] and relaxed consensus sequence FXGKGX[RK]LG." [PMID:17083136, PMID:27655872]	4967243	SOFA	SOFA	sequence	6	SO	biological_region	SHP_box
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002159	"A conserved Cdc48/p97 interaction motif with strict consensus sequence F[PI]GKG[TK][RK]LG[GT] and relaxed consensus sequence FXGKGX[RK]LG." [PMID:17083136, PMID:27655872]	5741709	SOFA	SOFA	sequence	7	SO	region	SHP_box
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002159	"A conserved Cdc48/p97 interaction motif with strict consensus sequence F[PI]GKG[TK][RK]LG[GT] and relaxed consensus sequence FXGKGX[RK]LG." [PMID:17083136, PMID:27655872]	6146694	SOFA	SOFA	sequence	8	SO	sequence_feature	SHP_box
SO:0002160	\N	\N	"A sequence variant that changes the length of one or more sequence features." []	SO:0002160	"A sequence variant that changes the length of one or more sequence features." []	47019	\N	\N	sequence	0	SO	sequence_length_variant	sequence_length_variant
SO:0001537	SO:0002160	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002160	"A sequence variant that changes the length of one or more sequence features." []	491831	\N	\N	sequence	1	SO	structural_variant	sequence_length_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002160	"A sequence variant that changes the length of one or more sequence features." []	1074513	\N	\N	sequence	2	SO	sequence_variant	sequence_length_variant
SO:0002161	\N	\N	"A sequence variant where the copies of a short tandem repeat (STR) feature are either contracted or expanded." []	SO:0002161	"A sequence variant where the copies of a short tandem repeat (STR) feature are either contracted or expanded." []	47020	\N	\N	sequence	0	SO	short_tandem_repeat_change	short_tandem_repeat_change
SO:0002160	SO:0002161	\N	"A sequence variant that changes the length of one or more sequence features." []	SO:0002161	"A sequence variant where the copies of a short tandem repeat (STR) feature are either contracted or expanded." []	491832	\N	\N	sequence	1	SO	sequence_length_variant	short_tandem_repeat_change
SO:0001537	SO:0002160	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002161	"A sequence variant where the copies of a short tandem repeat (STR) feature are either contracted or expanded." []	1074514	\N	\N	sequence	2	SO	structural_variant	short_tandem_repeat_change
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002161	"A sequence variant where the copies of a short tandem repeat (STR) feature are either contracted or expanded." []	1905683	\N	\N	sequence	3	SO	sequence_variant	short_tandem_repeat_change
SO:0002162	\N	\N	"A short tandem repeat variant containing more repeat units than the reference sequence." []	SO:0002162	"A short tandem repeat variant containing more repeat units than the reference sequence." []	47021	\N	\N	sequence	0	SO	short_tandem_repeat_expansion	short_tandem_repeat_expansion
SO:0002161	SO:0002162	\N	"A sequence variant where the copies of a short tandem repeat (STR) feature are either contracted or expanded." []	SO:0002162	"A short tandem repeat variant containing more repeat units than the reference sequence." []	491833	\N	\N	sequence	1	SO	short_tandem_repeat_change	short_tandem_repeat_expansion
SO:0002160	SO:0002161	\N	"A sequence variant that changes the length of one or more sequence features." []	SO:0002162	"A short tandem repeat variant containing more repeat units than the reference sequence." []	1074515	\N	\N	sequence	2	SO	sequence_length_variant	short_tandem_repeat_expansion
SO:0001537	SO:0002160	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002162	"A short tandem repeat variant containing more repeat units than the reference sequence." []	1905684	\N	\N	sequence	3	SO	structural_variant	short_tandem_repeat_expansion
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002162	"A short tandem repeat variant containing more repeat units than the reference sequence." []	2930109	\N	\N	sequence	4	SO	sequence_variant	short_tandem_repeat_expansion
SO:0002163	\N	\N	"A short tandem repeat variant containing fewer repeat units than the reference sequence." []	SO:0002163	"A short tandem repeat variant containing fewer repeat units than the reference sequence." []	47022	\N	\N	sequence	0	SO	short_tandem_repeat_contraction	short_tandem_repeat_contraction
SO:0002161	SO:0002163	\N	"A sequence variant where the copies of a short tandem repeat (STR) feature are either contracted or expanded." []	SO:0002163	"A short tandem repeat variant containing fewer repeat units than the reference sequence." []	491834	\N	\N	sequence	1	SO	short_tandem_repeat_change	short_tandem_repeat_contraction
SO:0002160	SO:0002161	\N	"A sequence variant that changes the length of one or more sequence features." []	SO:0002163	"A short tandem repeat variant containing fewer repeat units than the reference sequence." []	1074516	\N	\N	sequence	2	SO	sequence_length_variant	short_tandem_repeat_contraction
SO:0001537	SO:0002160	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002163	"A short tandem repeat variant containing fewer repeat units than the reference sequence." []	1905685	\N	\N	sequence	3	SO	structural_variant	short_tandem_repeat_contraction
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002163	"A short tandem repeat variant containing fewer repeat units than the reference sequence." []	2930110	\N	\N	sequence	4	SO	sequence_variant	short_tandem_repeat_contraction
SO:0002164	\N	\N	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B histone protein is acetylated." [http://www.actrec.gov.in/histome/ptm_sp.php?ptm_sp=H2BK5ac, PMID:18552846]	SO:0002164	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B histone protein is acetylated." [http://www.actrec.gov.in/histome/ptm_sp.php?ptm_sp=H2BK5ac, PMID:18552846]	47023	\N	\N	sequence	0	SO	H2BK5_acetylation_site	H2BK5_acetylation_site
SO:0002143	SO:0002164	\N	"A histone 2B modification where the modification is the acetylation of the residue." [ISBN:0815341059]	SO:0002164	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B histone protein is acetylated." [http://www.actrec.gov.in/histome/ptm_sp.php?ptm_sp=H2BK5ac, PMID:18552846]	491835	\N	\N	sequence	1	SO	histone_2B_acetylation_site	H2BK5_acetylation_site
SO:0001702	SO:0002143	\N	"A histone modification where the modification is the acylation of the residue." [SO:ke]	SO:0002164	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B histone protein is acetylated." [http://www.actrec.gov.in/histome/ptm_sp.php?ptm_sp=H2BK5ac, PMID:18552846]	1074517	\N	\N	sequence	2	SO	histone_acetylation_site	H2BK5_acetylation_site
SO:0001700	SO:0001702	\N	"Histone modification is a post translationally modified region whereby residues of the histone protein are modified by methylation, acetylation, phosphorylation, ubiquitination, sumoylation, citrullination, or ADP-ribosylation." [http:en.wikipedia.org/wiki/Histone]	SO:0002164	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B histone protein is acetylated." [http://www.actrec.gov.in/histome/ptm_sp.php?ptm_sp=H2BK5ac, PMID:18552846]	1905686	\N	\N	sequence	3	SO	histone_modification	H2BK5_acetylation_site
SO:0001089	SO:0001700	\N	"A region where a transformation occurs in a protein after it has been synthesized. This which may regulate, stabilize, crosslink or introduce new chemical functionalities in the protein." [EBIBS:GAR, UniProt:curation_manual]	SO:0002164	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B histone protein is acetylated." [http://www.actrec.gov.in/histome/ptm_sp.php?ptm_sp=H2BK5ac, PMID:18552846]	2930111	\N	biosapiens	sequence	4	SO	post_translationally_modified_region	H2BK5_acetylation_site
SO:0001720	SO:0001700	\N	"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence." [http://en.wikipedia.org/wiki/Epigenetics, SO:ke]	SO:0002164	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B histone protein is acetylated." [http://www.actrec.gov.in/histome/ptm_sp.php?ptm_sp=H2BK5ac, PMID:18552846]	2930112	\N	SOFA	sequence	4	SO	epigenetically_modified_region	H2BK5_acetylation_site
SO:0100001	SO:0001089	\N	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0002164	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B histone protein is acetylated." [http://www.actrec.gov.in/histome/ptm_sp.php?ptm_sp=H2BK5ac, PMID:18552846]	4003116	biosapiens	biosapiens	sequence	5	SO	biochemical_region_of_peptide	H2BK5_acetylation_site
SO:0001411	SO:0001720	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002164	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B histone protein is acetylated." [http://www.actrec.gov.in/histome/ptm_sp.php?ptm_sp=H2BK5ac, PMID:18552846]	4003117	SOFA	SOFA	sequence	5	SO	biological_region	H2BK5_acetylation_site
SO:0001067	SO:0100001	\N	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0002164	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B histone protein is acetylated." [http://www.actrec.gov.in/histome/ptm_sp.php?ptm_sp=H2BK5ac, PMID:18552846]	4967245	biosapiens	biosapiens	sequence	6	SO	polypeptide_motif	H2BK5_acetylation_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002164	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B histone protein is acetylated." [http://www.actrec.gov.in/histome/ptm_sp.php?ptm_sp=H2BK5ac, PMID:18552846]	7105174	SOFA	SOFA	sequence	11	SO	region	H2BK5_acetylation_site
SO:0100021	SO:0001067	\N	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0002164	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B histone protein is acetylated." [http://www.actrec.gov.in/histome/ptm_sp.php?ptm_sp=H2BK5ac, PMID:18552846]	5741711	biosapiens	biosapiens	sequence	7	SO	polypeptide_conserved_region	H2BK5_acetylation_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002164	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B histone protein is acetylated." [http://www.actrec.gov.in/histome/ptm_sp.php?ptm_sp=H2BK5ac, PMID:18552846]	7181739	SOFA	SOFA	sequence	12	SO	sequence_feature	H2BK5_acetylation_site
SO:0000839	SO:0100021	\N	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0002164	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B histone protein is acetylated." [http://www.actrec.gov.in/histome/ptm_sp.php?ptm_sp=H2BK5ac, PMID:18552846]	6311352	biosapiens	biosapiens,SOFA	sequence	8	SO	polypeptide_region	H2BK5_acetylation_site
SO:0000104	SO:0000839	\N	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0002164	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B histone protein is acetylated." [http://www.actrec.gov.in/histome/ptm_sp.php?ptm_sp=H2BK5ac, PMID:18552846]	6699558	biosapiens,SOFA	SOFA	sequence	9	SO	polypeptide	H2BK5_acetylation_site
SO:0001411	SO:0000839	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002164	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B histone protein is acetylated." [http://www.actrec.gov.in/histome/ptm_sp.php?ptm_sp=H2BK5ac, PMID:18552846]	6699559	biosapiens,SOFA	SOFA	sequence	9	SO	biological_region	H2BK5_acetylation_site
SO:0001411	SO:0000104	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002164	"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B histone protein is acetylated." [http://www.actrec.gov.in/histome/ptm_sp.php?ptm_sp=H2BK5ac, PMID:18552846]	6948221	SOFA	SOFA	sequence	10	SO	biological_region	H2BK5_acetylation_site
SO:0002165	\N	\N	"A short tandem repeat expansion with an increase in a sequence of three nucleotide units repeated in tandem compared to a reference sequence." []	SO:0002165	"A short tandem repeat expansion with an increase in a sequence of three nucleotide units repeated in tandem compared to a reference sequence." []	47024	\N	\N	sequence	0	SO	trinucleotide_repeat_expansion	trinucleotide_repeat_expansion
SO:0002162	SO:0002165	\N	"A short tandem repeat variant containing more repeat units than the reference sequence." []	SO:0002165	"A short tandem repeat expansion with an increase in a sequence of three nucleotide units repeated in tandem compared to a reference sequence." []	491836	\N	\N	sequence	1	SO	short_tandem_repeat_expansion	trinucleotide_repeat_expansion
SO:0002161	SO:0002162	\N	"A sequence variant where the copies of a short tandem repeat (STR) feature are either contracted or expanded." []	SO:0002165	"A short tandem repeat expansion with an increase in a sequence of three nucleotide units repeated in tandem compared to a reference sequence." []	1074518	\N	\N	sequence	2	SO	short_tandem_repeat_change	trinucleotide_repeat_expansion
SO:0002160	SO:0002161	\N	"A sequence variant that changes the length of one or more sequence features." []	SO:0002165	"A short tandem repeat expansion with an increase in a sequence of three nucleotide units repeated in tandem compared to a reference sequence." []	1905687	\N	\N	sequence	3	SO	sequence_length_variant	trinucleotide_repeat_expansion
SO:0001537	SO:0002160	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002165	"A short tandem repeat expansion with an increase in a sequence of three nucleotide units repeated in tandem compared to a reference sequence." []	2930113	\N	\N	sequence	4	SO	structural_variant	trinucleotide_repeat_expansion
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002165	"A short tandem repeat expansion with an increase in a sequence of three nucleotide units repeated in tandem compared to a reference sequence." []	4003118	\N	\N	sequence	5	SO	sequence_variant	trinucleotide_repeat_expansion
SO:0002166	\N	\N	"A ref_miRNA (RefSeq-miRNA) sequence is assigned at the creation of a new mature miRNA entry in a database. The ref_miRNA sequence designation remains unchanged even if a different isomiR is later shown to be expressed at a higher level. A ref_miRNA can be produced by one or multiple pre-miRNA." [PMID:26453491]	SO:0002166	"A ref_miRNA (RefSeq-miRNA) sequence is assigned at the creation of a new mature miRNA entry in a database. The ref_miRNA sequence designation remains unchanged even if a different isomiR is later shown to be expressed at a higher level. A ref_miRNA can be produced by one or multiple pre-miRNA." [PMID:26453491]	47025	\N	\N	sequence	0	SO	ref_miRNA	ref_miRNA
SO:0000276	SO:0002166	\N	"Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene (or the product of other non coding RNA genes. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (usually via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors." [PMID:11081512, PMID:12592000]	SO:0002166	"A ref_miRNA (RefSeq-miRNA) sequence is assigned at the creation of a new mature miRNA entry in a database. The ref_miRNA sequence designation remains unchanged even if a different isomiR is later shown to be expressed at a higher level. A ref_miRNA can be produced by one or multiple pre-miRNA." [PMID:26453491]	491837	\N	SOFA	sequence	1	SO	miRNA	ref_miRNA
SO:0000370	SO:0000276	\N	"A non-coding RNA less than 200 nucleotides long, usually with a specific secondary structure, that acts to regulate gene expression. These include short ncRNAs such as piRNA, miRNA and siRNAs (among others)." [PMID:28541282, PomBase:al, SO:ma]	SO:0002166	"A ref_miRNA (RefSeq-miRNA) sequence is assigned at the creation of a new mature miRNA entry in a database. The ref_miRNA sequence designation remains unchanged even if a different isomiR is later shown to be expressed at a higher level. A ref_miRNA can be produced by one or multiple pre-miRNA." [PMID:26453491]	1074519	SOFA	SOFA	sequence	2	SO	small_regulatory_ncRNA	ref_miRNA
SO:0001244	SO:0000276	\N	"The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin structure." [SO:ke]	SO:0002166	"A ref_miRNA (RefSeq-miRNA) sequence is assigned at the creation of a new mature miRNA entry in a database. The ref_miRNA sequence designation remains unchanged even if a different isomiR is later shown to be expressed at a higher level. A ref_miRNA can be produced by one or multiple pre-miRNA." [PMID:26453491]	1074520	SOFA	\N	sequence	2	SO	pre_miRNA	ref_miRNA
SO:0000655	SO:0000370	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0002166	"A ref_miRNA (RefSeq-miRNA) sequence is assigned at the creation of a new mature miRNA entry in a database. The ref_miRNA sequence designation remains unchanged even if a different isomiR is later shown to be expressed at a higher level. A ref_miRNA can be produced by one or multiple pre-miRNA." [PMID:26453491]	1905688	SOFA	SOFA	sequence	3	SO	ncRNA	ref_miRNA
SO:0001243	SO:0001244	\N	"A part of an miRNA primary_transcript." [SO:ke]	SO:0002166	"A ref_miRNA (RefSeq-miRNA) sequence is assigned at the creation of a new mature miRNA entry in a database. The ref_miRNA sequence designation remains unchanged even if a different isomiR is later shown to be expressed at a higher level. A ref_miRNA can be produced by one or multiple pre-miRNA." [PMID:26453491]	1905689	\N	\N	sequence	3	SO	miRNA_primary_transcript_region	ref_miRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0002166	"A ref_miRNA (RefSeq-miRNA) sequence is assigned at the creation of a new mature miRNA entry in a database. The ref_miRNA sequence designation remains unchanged even if a different isomiR is later shown to be expressed at a higher level. A ref_miRNA can be produced by one or multiple pre-miRNA." [PMID:26453491]	2930114	SOFA	SOFA	sequence	4	SO	mature_transcript	ref_miRNA
SO:0000835	SO:0001243	\N	"A part of a primary transcript." [SO:ke]	SO:0002166	"A ref_miRNA (RefSeq-miRNA) sequence is assigned at the creation of a new mature miRNA entry in a database. The ref_miRNA sequence designation remains unchanged even if a different isomiR is later shown to be expressed at a higher level. A ref_miRNA can be produced by one or multiple pre-miRNA." [PMID:26453491]	2930115	\N	SOFA	sequence	4	SO	primary_transcript_region	ref_miRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002166	"A ref_miRNA (RefSeq-miRNA) sequence is assigned at the creation of a new mature miRNA entry in a database. The ref_miRNA sequence designation remains unchanged even if a different isomiR is later shown to be expressed at a higher level. A ref_miRNA can be produced by one or multiple pre-miRNA." [PMID:26453491]	4003119	SOFA	SOFA	sequence	5	SO	transcript	ref_miRNA
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0002166	"A ref_miRNA (RefSeq-miRNA) sequence is assigned at the creation of a new mature miRNA entry in a database. The ref_miRNA sequence designation remains unchanged even if a different isomiR is later shown to be expressed at a higher level. A ref_miRNA can be produced by one or multiple pre-miRNA." [PMID:26453491]	4003120	SOFA	SOFA	sequence	5	SO	primary_transcript	ref_miRNA
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0002166	"A ref_miRNA (RefSeq-miRNA) sequence is assigned at the creation of a new mature miRNA entry in a database. The ref_miRNA sequence designation remains unchanged even if a different isomiR is later shown to be expressed at a higher level. A ref_miRNA can be produced by one or multiple pre-miRNA." [PMID:26453491]	4003121	SOFA	SOFA	sequence	5	SO	transcript_region	ref_miRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002166	"A ref_miRNA (RefSeq-miRNA) sequence is assigned at the creation of a new mature miRNA entry in a database. The ref_miRNA sequence designation remains unchanged even if a different isomiR is later shown to be expressed at a higher level. A ref_miRNA can be produced by one or multiple pre-miRNA." [PMID:26453491]	5741714	SOFA	SOFA	sequence	7	SO	gene_member_region	ref_miRNA
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002166	"A ref_miRNA (RefSeq-miRNA) sequence is assigned at the creation of a new mature miRNA entry in a database. The ref_miRNA sequence designation remains unchanged even if a different isomiR is later shown to be expressed at a higher level. A ref_miRNA can be produced by one or multiple pre-miRNA." [PMID:26453491]	4967248	SOFA	SOFA	sequence	6	SO	transcript	ref_miRNA
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002166	"A ref_miRNA (RefSeq-miRNA) sequence is assigned at the creation of a new mature miRNA entry in a database. The ref_miRNA sequence designation remains unchanged even if a different isomiR is later shown to be expressed at a higher level. A ref_miRNA can be produced by one or multiple pre-miRNA." [PMID:26453491]	4967249	SOFA	SOFA	sequence	6	SO	transcript	ref_miRNA
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002166	"A ref_miRNA (RefSeq-miRNA) sequence is assigned at the creation of a new mature miRNA entry in a database. The ref_miRNA sequence designation remains unchanged even if a different isomiR is later shown to be expressed at a higher level. A ref_miRNA can be produced by one or multiple pre-miRNA." [PMID:26453491]	4967250	SOFA	SOFA	sequence	6	SO	biological_region	ref_miRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002166	"A ref_miRNA (RefSeq-miRNA) sequence is assigned at the creation of a new mature miRNA entry in a database. The ref_miRNA sequence designation remains unchanged even if a different isomiR is later shown to be expressed at a higher level. A ref_miRNA can be produced by one or multiple pre-miRNA." [PMID:26453491]	6146695	SOFA	SOFA	sequence	8	SO	biological_region	ref_miRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002166	"A ref_miRNA (RefSeq-miRNA) sequence is assigned at the creation of a new mature miRNA entry in a database. The ref_miRNA sequence designation remains unchanged even if a different isomiR is later shown to be expressed at a higher level. A ref_miRNA can be produced by one or multiple pre-miRNA." [PMID:26453491]	6631420	SOFA	SOFA	sequence	9	SO	region	ref_miRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002166	"A ref_miRNA (RefSeq-miRNA) sequence is assigned at the creation of a new mature miRNA entry in a database. The ref_miRNA sequence designation remains unchanged even if a different isomiR is later shown to be expressed at a higher level. A ref_miRNA can be produced by one or multiple pre-miRNA." [PMID:26453491]	6888946	SOFA	SOFA	sequence	10	SO	sequence_feature	ref_miRNA
SO:0002167	\N	\N	"IsomiRs are all the bona fide variants of a mature product. IsomiRs should be connected to the ref_miRNA it is most likely to be the variant of. Some isomiRs can be variations of one or multiple ref_miRNA." [PMID:26453491]	SO:0002167	"IsomiRs are all the bona fide variants of a mature product. IsomiRs should be connected to the ref_miRNA it is most likely to be the variant of. Some isomiRs can be variations of one or multiple ref_miRNA." [PMID:26453491]	47026	\N	\N	sequence	0	SO	isomiR	isomiR
SO:0000276	SO:0002167	\N	"Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene (or the product of other non coding RNA genes. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (usually via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors." [PMID:11081512, PMID:12592000]	SO:0002167	"IsomiRs are all the bona fide variants of a mature product. IsomiRs should be connected to the ref_miRNA it is most likely to be the variant of. Some isomiRs can be variations of one or multiple ref_miRNA." [PMID:26453491]	491838	\N	SOFA	sequence	1	SO	miRNA	isomiR
SO:0000370	SO:0000276	\N	"A non-coding RNA less than 200 nucleotides long, usually with a specific secondary structure, that acts to regulate gene expression. These include short ncRNAs such as piRNA, miRNA and siRNAs (among others)." [PMID:28541282, PomBase:al, SO:ma]	SO:0002167	"IsomiRs are all the bona fide variants of a mature product. IsomiRs should be connected to the ref_miRNA it is most likely to be the variant of. Some isomiRs can be variations of one or multiple ref_miRNA." [PMID:26453491]	1074521	SOFA	SOFA	sequence	2	SO	small_regulatory_ncRNA	isomiR
SO:0001244	SO:0000276	\N	"The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin structure." [SO:ke]	SO:0002167	"IsomiRs are all the bona fide variants of a mature product. IsomiRs should be connected to the ref_miRNA it is most likely to be the variant of. Some isomiRs can be variations of one or multiple ref_miRNA." [PMID:26453491]	1074522	SOFA	\N	sequence	2	SO	pre_miRNA	isomiR
SO:0000655	SO:0000370	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0002167	"IsomiRs are all the bona fide variants of a mature product. IsomiRs should be connected to the ref_miRNA it is most likely to be the variant of. Some isomiRs can be variations of one or multiple ref_miRNA." [PMID:26453491]	1905690	SOFA	SOFA	sequence	3	SO	ncRNA	isomiR
SO:0001243	SO:0001244	\N	"A part of an miRNA primary_transcript." [SO:ke]	SO:0002167	"IsomiRs are all the bona fide variants of a mature product. IsomiRs should be connected to the ref_miRNA it is most likely to be the variant of. Some isomiRs can be variations of one or multiple ref_miRNA." [PMID:26453491]	1905691	\N	\N	sequence	3	SO	miRNA_primary_transcript_region	isomiR
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0002167	"IsomiRs are all the bona fide variants of a mature product. IsomiRs should be connected to the ref_miRNA it is most likely to be the variant of. Some isomiRs can be variations of one or multiple ref_miRNA." [PMID:26453491]	2930116	SOFA	SOFA	sequence	4	SO	mature_transcript	isomiR
SO:0000835	SO:0001243	\N	"A part of a primary transcript." [SO:ke]	SO:0002167	"IsomiRs are all the bona fide variants of a mature product. IsomiRs should be connected to the ref_miRNA it is most likely to be the variant of. Some isomiRs can be variations of one or multiple ref_miRNA." [PMID:26453491]	2930117	\N	SOFA	sequence	4	SO	primary_transcript_region	isomiR
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002167	"IsomiRs are all the bona fide variants of a mature product. IsomiRs should be connected to the ref_miRNA it is most likely to be the variant of. Some isomiRs can be variations of one or multiple ref_miRNA." [PMID:26453491]	4003122	SOFA	SOFA	sequence	5	SO	transcript	isomiR
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0002167	"IsomiRs are all the bona fide variants of a mature product. IsomiRs should be connected to the ref_miRNA it is most likely to be the variant of. Some isomiRs can be variations of one or multiple ref_miRNA." [PMID:26453491]	4003123	SOFA	SOFA	sequence	5	SO	primary_transcript	isomiR
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:0002167	"IsomiRs are all the bona fide variants of a mature product. IsomiRs should be connected to the ref_miRNA it is most likely to be the variant of. Some isomiRs can be variations of one or multiple ref_miRNA." [PMID:26453491]	4003124	SOFA	SOFA	sequence	5	SO	transcript_region	isomiR
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002167	"IsomiRs are all the bona fide variants of a mature product. IsomiRs should be connected to the ref_miRNA it is most likely to be the variant of. Some isomiRs can be variations of one or multiple ref_miRNA." [PMID:26453491]	5741717	SOFA	SOFA	sequence	7	SO	gene_member_region	isomiR
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002167	"IsomiRs are all the bona fide variants of a mature product. IsomiRs should be connected to the ref_miRNA it is most likely to be the variant of. Some isomiRs can be variations of one or multiple ref_miRNA." [PMID:26453491]	4967252	SOFA	SOFA	sequence	6	SO	transcript	isomiR
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002167	"IsomiRs are all the bona fide variants of a mature product. IsomiRs should be connected to the ref_miRNA it is most likely to be the variant of. Some isomiRs can be variations of one or multiple ref_miRNA." [PMID:26453491]	4967253	SOFA	SOFA	sequence	6	SO	transcript	isomiR
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002167	"IsomiRs are all the bona fide variants of a mature product. IsomiRs should be connected to the ref_miRNA it is most likely to be the variant of. Some isomiRs can be variations of one or multiple ref_miRNA." [PMID:26453491]	4967254	SOFA	SOFA	sequence	6	SO	biological_region	isomiR
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002167	"IsomiRs are all the bona fide variants of a mature product. IsomiRs should be connected to the ref_miRNA it is most likely to be the variant of. Some isomiRs can be variations of one or multiple ref_miRNA." [PMID:26453491]	6146696	SOFA	SOFA	sequence	8	SO	biological_region	isomiR
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002167	"IsomiRs are all the bona fide variants of a mature product. IsomiRs should be connected to the ref_miRNA it is most likely to be the variant of. Some isomiRs can be variations of one or multiple ref_miRNA." [PMID:26453491]	6631422	SOFA	SOFA	sequence	9	SO	region	isomiR
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002167	"IsomiRs are all the bona fide variants of a mature product. IsomiRs should be connected to the ref_miRNA it is most likely to be the variant of. Some isomiRs can be variations of one or multiple ref_miRNA." [PMID:26453491]	6888947	SOFA	SOFA	sequence	10	SO	sequence_feature	isomiR
SO:0002168	\N	\N	"An RNA_thermometer is a cis element in the 5' end of an mRNA that can change its secondary structure in response to temperature and coordinate temperature-dependent gene expression." [PMID:22421878]	SO:0002168	"An RNA_thermometer is a cis element in the 5' end of an mRNA that can change its secondary structure in response to temperature and coordinate temperature-dependent gene expression." [PMID:22421878]	47027	\N	\N	sequence	0	SO	RNA_thermometer	RNA_thermometer
SO:0000234	SO:0002168	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0002168	"An RNA_thermometer is a cis element in the 5' end of an mRNA that can change its secondary structure in response to temperature and coordinate temperature-dependent gene expression." [PMID:22421878]	491839	\N	SOFA	sequence	1	SO	mRNA	RNA_thermometer
SO:0000836	SO:0002168	\N	"A region of an mRNA." [SO:cb]	SO:0002168	"An RNA_thermometer is a cis element in the 5' end of an mRNA that can change its secondary structure in response to temperature and coordinate temperature-dependent gene expression." [PMID:22421878]	491840	\N	SOFA	sequence	1	SO	mRNA_region	RNA_thermometer
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0002168	"An RNA_thermometer is a cis element in the 5' end of an mRNA that can change its secondary structure in response to temperature and coordinate temperature-dependent gene expression." [PMID:22421878]	1905693	SOFA	SOFA	sequence	3	SO	mature_transcript	RNA_thermometer
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:0002168	"An RNA_thermometer is a cis element in the 5' end of an mRNA that can change its secondary structure in response to temperature and coordinate temperature-dependent gene expression." [PMID:22421878]	1074524	SOFA	SOFA	sequence	2	SO	mRNA	RNA_thermometer
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:0002168	"An RNA_thermometer is a cis element in the 5' end of an mRNA that can change its secondary structure in response to temperature and coordinate temperature-dependent gene expression." [PMID:22421878]	1074525	SOFA	SOFA	sequence	2	SO	mature_transcript_region	RNA_thermometer
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002168	"An RNA_thermometer is a cis element in the 5' end of an mRNA that can change its secondary structure in response to temperature and coordinate temperature-dependent gene expression." [PMID:22421878]	2018251	SOFA	SOFA	sequence	4	SO	transcript	RNA_thermometer
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:0002168	"An RNA_thermometer is a cis element in the 5' end of an mRNA that can change its secondary structure in response to temperature and coordinate temperature-dependent gene expression." [PMID:22421878]	1905694	SOFA	SOFA	sequence	3	SO	transcript_region	RNA_thermometer
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0002168	"An RNA_thermometer is a cis element in the 5' end of an mRNA that can change its secondary structure in response to temperature and coordinate temperature-dependent gene expression." [PMID:22421878]	3174032	SOFA	SOFA	sequence	5	SO	gene_member_region	RNA_thermometer
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0002168	"An RNA_thermometer is a cis element in the 5' end of an mRNA that can change its secondary structure in response to temperature and coordinate temperature-dependent gene expression." [PMID:22421878]	2930119	SOFA	SOFA	sequence	4	SO	transcript	RNA_thermometer
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002168	"An RNA_thermometer is a cis element in the 5' end of an mRNA that can change its secondary structure in response to temperature and coordinate temperature-dependent gene expression." [PMID:22421878]	2930120	SOFA	SOFA	sequence	4	SO	biological_region	RNA_thermometer
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002168	"An RNA_thermometer is a cis element in the 5' end of an mRNA that can change its secondary structure in response to temperature and coordinate temperature-dependent gene expression." [PMID:22421878]	4385894	SOFA	SOFA	sequence	6	SO	biological_region	RNA_thermometer
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002168	"An RNA_thermometer is a cis element in the 5' end of an mRNA that can change its secondary structure in response to temperature and coordinate temperature-dependent gene expression." [PMID:22421878]	5407510	SOFA	SOFA	sequence	7	SO	region	RNA_thermometer
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002168	"An RNA_thermometer is a cis element in the 5' end of an mRNA that can change its secondary structure in response to temperature and coordinate temperature-dependent gene expression." [PMID:22421878]	5996473	SOFA	SOFA	sequence	8	SO	sequence_feature	RNA_thermometer
SO:0002169	\N	\N	"A sequence variant that falls in the polypyrimidine tract at 3' end of intron between 17 and 3 bases from the end (acceptor -3 to acceptor -17)." []	SO:0002169	"A sequence variant that falls in the polypyrimidine tract at 3' end of intron between 17 and 3 bases from the end (acceptor -3 to acceptor -17)." []	47028	\N	\N	sequence	0	SO	splice_polypyrimidine_tract_variant	splice_polypyrimidine_tract_variant
SO:0001568	SO:0002169	\N	"A sequence variant that changes the process of splicing." [SO:ke]	SO:0002169	"A sequence variant that falls in the polypyrimidine tract at 3' end of intron between 17 and 3 bases from the end (acceptor -3 to acceptor -17)." []	491841	\N	\N	sequence	1	SO	splicing_variant	splice_polypyrimidine_tract_variant
SO:0001576	SO:0001568	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002169	"A sequence variant that falls in the polypyrimidine tract at 3' end of intron between 17 and 3 bases from the end (acceptor -3 to acceptor -17)." []	1074526	\N	\N	sequence	2	SO	transcript_variant	splice_polypyrimidine_tract_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0002169	"A sequence variant that falls in the polypyrimidine tract at 3' end of intron between 17 and 3 bases from the end (acceptor -3 to acceptor -17)." []	1905695	\N	\N	sequence	3	SO	gene_variant	splice_polypyrimidine_tract_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002169	"A sequence variant that falls in the polypyrimidine tract at 3' end of intron between 17 and 3 bases from the end (acceptor -3 to acceptor -17)." []	2930121	\N	\N	sequence	4	SO	feature_variant	splice_polypyrimidine_tract_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002169	"A sequence variant that falls in the polypyrimidine tract at 3' end of intron between 17 and 3 bases from the end (acceptor -3 to acceptor -17)." []	4003127	\N	\N	sequence	5	SO	structural_variant	splice_polypyrimidine_tract_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002169	"A sequence variant that falls in the polypyrimidine tract at 3' end of intron between 17 and 3 bases from the end (acceptor -3 to acceptor -17)." []	4967257	\N	\N	sequence	6	SO	sequence_variant	splice_polypyrimidine_tract_variant
SO:0002170	\N	\N	"A sequence variant that falls in the region between the 3rd and 6th base after splice junction (5' end of intron)." []	SO:0002170	"A sequence variant that falls in the region between the 3rd and 6th base after splice junction (5' end of intron)." []	47029	\N	\N	sequence	0	SO	splice_donor_region_variant	splice_donor_region_variant
SO:0001630	SO:0002170	\N	"A sequence variant in which a change has occurred within the region of the splice site, either within 1-3 bases of the exon or 3-8 bases of the intron." [http://ensembl.org/info/docs/variation/index.html]	SO:0002170	"A sequence variant that falls in the region between the 3rd and 6th base after splice junction (5' end of intron)." []	491842	\N	\N	sequence	1	SO	splice_region_variant	splice_donor_region_variant
SO:0001568	SO:0001630	\N	"A sequence variant that changes the process of splicing." [SO:ke]	SO:0002170	"A sequence variant that falls in the region between the 3rd and 6th base after splice junction (5' end of intron)." []	1074527	\N	\N	sequence	2	SO	splicing_variant	splice_donor_region_variant
SO:0001576	SO:0001568	\N	"A sequence variant that changes the structure of the transcript." [SO:ke]	SO:0002170	"A sequence variant that falls in the region between the 3rd and 6th base after splice junction (5' end of intron)." []	1905696	\N	\N	sequence	3	SO	transcript_variant	splice_donor_region_variant
SO:0001564	SO:0001576	\N	"A sequence variant where the structure of the gene is changed." [SO:ke]	SO:0002170	"A sequence variant that falls in the region between the 3rd and 6th base after splice junction (5' end of intron)." []	2930122	\N	\N	sequence	4	SO	gene_variant	splice_donor_region_variant
SO:0001878	SO:0001564	\N	"A sequence variant that falls entirely or partially within a genomic feature." [EBI:fc, SO:ke]	SO:0002170	"A sequence variant that falls in the region between the 3rd and 6th base after splice junction (5' end of intron)." []	4003128	\N	\N	sequence	5	SO	feature_variant	splice_donor_region_variant
SO:0001537	SO:0001878	\N	"A sequence variant that changes one or more sequence features." [SO:ke]	SO:0002170	"A sequence variant that falls in the region between the 3rd and 6th base after splice junction (5' end of intron)." []	4967258	\N	\N	sequence	6	SO	structural_variant	splice_donor_region_variant
SO:0001060	SO:0001537	\N	"A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." [SO:ke]	SO:0002170	"A sequence variant that falls in the region between the 3rd and 6th base after splice junction (5' end of intron)." []	5741719	\N	\N	sequence	7	SO	sequence_variant	splice_donor_region_variant
SO:0002171	\N	\N	"A telomeric D-loop is a three-stranded DNA displacement loop that forms at the site where the telomeric 3' single-stranded DNA overhang (formed of the repeat sequence TTAGGG in mammals) is tucked back inside the double-stranded component of telomeric DNA molecule, thus forming a t-loop or telomeric-loop and protecting the chromosome terminus." [PMID:10338204, PMID:15071557, PMID:24012755]	SO:0002171	"A telomeric D-loop is a three-stranded DNA displacement loop that forms at the site where the telomeric 3' single-stranded DNA overhang (formed of the repeat sequence TTAGGG in mammals) is tucked back inside the double-stranded component of telomeric DNA molecule, thus forming a t-loop or telomeric-loop and protecting the chromosome terminus." [PMID:10338204, PMID:15071557, PMID:24012755]	47030	\N	\N	sequence	0	SO	telomeric_D_loop	telomeric_D_loop
SO:0000296	SO:0002171	\N	"The origin of replication; starting site for duplication of a nucleic acid molecule to give two identical copies." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0002171	"A telomeric D-loop is a three-stranded DNA displacement loop that forms at the site where the telomeric 3' single-stranded DNA overhang (formed of the repeat sequence TTAGGG in mammals) is tucked back inside the double-stranded component of telomeric DNA molecule, thus forming a t-loop or telomeric-loop and protecting the chromosome terminus." [PMID:10338204, PMID:15071557, PMID:24012755]	491843	\N	SOFA	sequence	1	SO	origin_of_replication	telomeric_D_loop
SO:0001235	SO:0000296	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:0002171	"A telomeric D-loop is a three-stranded DNA displacement loop that forms at the site where the telomeric 3' single-stranded DNA overhang (formed of the repeat sequence TTAGGG in mammals) is tucked back inside the double-stranded component of telomeric DNA molecule, thus forming a t-loop or telomeric-loop and protecting the chromosome terminus." [PMID:10338204, PMID:15071557, PMID:24012755]	1074528	SOFA	SOFA	sequence	2	SO	replicon	telomeric_D_loop
SO:0001411	SO:0000296	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002171	"A telomeric D-loop is a three-stranded DNA displacement loop that forms at the site where the telomeric 3' single-stranded DNA overhang (formed of the repeat sequence TTAGGG in mammals) is tucked back inside the double-stranded component of telomeric DNA molecule, thus forming a t-loop or telomeric-loop and protecting the chromosome terminus." [PMID:10338204, PMID:15071557, PMID:24012755]	1074529	SOFA	SOFA	sequence	2	SO	biological_region	telomeric_D_loop
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002171	"A telomeric D-loop is a three-stranded DNA displacement loop that forms at the site where the telomeric 3' single-stranded DNA overhang (formed of the repeat sequence TTAGGG in mammals) is tucked back inside the double-stranded component of telomeric DNA molecule, thus forming a t-loop or telomeric-loop and protecting the chromosome terminus." [PMID:10338204, PMID:15071557, PMID:24012755]	1905697	SOFA	SOFA	sequence	3	SO	biological_region	telomeric_D_loop
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002171	"A telomeric D-loop is a three-stranded DNA displacement loop that forms at the site where the telomeric 3' single-stranded DNA overhang (formed of the repeat sequence TTAGGG in mammals) is tucked back inside the double-stranded component of telomeric DNA molecule, thus forming a t-loop or telomeric-loop and protecting the chromosome terminus." [PMID:10338204, PMID:15071557, PMID:24012755]	2930123	SOFA	SOFA	sequence	4	SO	region	telomeric_D_loop
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002171	"A telomeric D-loop is a three-stranded DNA displacement loop that forms at the site where the telomeric 3' single-stranded DNA overhang (formed of the repeat sequence TTAGGG in mammals) is tucked back inside the double-stranded component of telomeric DNA molecule, thus forming a t-loop or telomeric-loop and protecting the chromosome terminus." [PMID:10338204, PMID:15071557, PMID:24012755]	3174033	SOFA	SOFA	sequence	5	SO	sequence_feature	telomeric_D_loop
SO:0002172	\N	\N	"A sequence_alteration where the source of the alteration is due to an artifact in the base-calling or assembly process." []	SO:0002172	"A sequence_alteration where the source of the alteration is due to an artifact in the base-calling or assembly process." []	47031	\N	\N	sequence	0	SO	sequence_alteration_artifact	sequence_alteration_artifact
SO:0000413	SO:0002172	\N	"A region where the sequence differs from that of a specified sequence." [SO:ke]	SO:0002172	"A sequence_alteration where the source of the alteration is due to an artifact in the base-calling or assembly process." []	491844	\N	SOFA	sequence	1	SO	sequence_difference	sequence_alteration_artifact
SO:0000700	SO:0000413	\N	"A comment about the sequence." [SO:ke]	SO:0002172	"A sequence_alteration where the source of the alteration is due to an artifact in the base-calling or assembly process." []	1074530	SOFA	SOFA	sequence	2	SO	remark	sequence_alteration_artifact
SO:0001410	SO:0000700	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0002172	"A sequence_alteration where the source of the alteration is due to an artifact in the base-calling or assembly process." []	1905699	SOFA	SOFA	sequence	3	SO	experimental_feature	sequence_alteration_artifact
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002172	"A sequence_alteration where the source of the alteration is due to an artifact in the base-calling or assembly process." []	2930125	SOFA	SOFA	sequence	4	SO	region	sequence_alteration_artifact
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002172	"A sequence_alteration where the source of the alteration is due to an artifact in the base-calling or assembly process." []	4003129	SOFA	SOFA	sequence	5	SO	sequence_feature	sequence_alteration_artifact
SO:0002173	\N	\N	"An indel that is the result of base-calling or assembly error." []	SO:0002173	"An indel that is the result of base-calling or assembly error." []	47032	\N	\N	sequence	0	SO	indel_artifact	indel_artifact
SO:0002172	SO:0002173	\N	"A sequence_alteration where the source of the alteration is due to an artifact in the base-calling or assembly process." []	SO:0002173	"An indel that is the result of base-calling or assembly error." []	491845	\N	\N	sequence	1	SO	sequence_alteration_artifact	indel_artifact
SO:0000413	SO:0002172	\N	"A region where the sequence differs from that of a specified sequence." [SO:ke]	SO:0002173	"An indel that is the result of base-calling or assembly error." []	1074531	\N	SOFA	sequence	2	SO	sequence_difference	indel_artifact
SO:0000700	SO:0000413	\N	"A comment about the sequence." [SO:ke]	SO:0002173	"An indel that is the result of base-calling or assembly error." []	1905700	SOFA	SOFA	sequence	3	SO	remark	indel_artifact
SO:0001410	SO:0000700	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0002173	"An indel that is the result of base-calling or assembly error." []	2930126	SOFA	SOFA	sequence	4	SO	experimental_feature	indel_artifact
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002173	"An indel that is the result of base-calling or assembly error." []	4003130	SOFA	SOFA	sequence	5	SO	region	indel_artifact
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002173	"An indel that is the result of base-calling or assembly error." []	4967259	SOFA	SOFA	sequence	6	SO	sequence_feature	indel_artifact
SO:0002174	\N	\N	"A deletion that is the result of base-calling or assembly error." []	SO:0002174	"A deletion that is the result of base-calling or assembly error." []	47033	\N	\N	sequence	0	SO	deletion_artifact	deletion_artifact
SO:0002172	SO:0002174	\N	"A sequence_alteration where the source of the alteration is due to an artifact in the base-calling or assembly process." []	SO:0002174	"A deletion that is the result of base-calling or assembly error." []	491846	\N	\N	sequence	1	SO	sequence_alteration_artifact	deletion_artifact
SO:0000413	SO:0002172	\N	"A region where the sequence differs from that of a specified sequence." [SO:ke]	SO:0002174	"A deletion that is the result of base-calling or assembly error." []	1074532	\N	SOFA	sequence	2	SO	sequence_difference	deletion_artifact
SO:0000700	SO:0000413	\N	"A comment about the sequence." [SO:ke]	SO:0002174	"A deletion that is the result of base-calling or assembly error." []	1905701	SOFA	SOFA	sequence	3	SO	remark	deletion_artifact
SO:0001410	SO:0000700	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0002174	"A deletion that is the result of base-calling or assembly error." []	2930127	SOFA	SOFA	sequence	4	SO	experimental_feature	deletion_artifact
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002174	"A deletion that is the result of base-calling or assembly error." []	4003131	SOFA	SOFA	sequence	5	SO	region	deletion_artifact
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002174	"A deletion that is the result of base-calling or assembly error." []	4967260	SOFA	SOFA	sequence	6	SO	sequence_feature	deletion_artifact
SO:0002175	\N	\N	"An insertion that is the result of base-calling or assembly error." []	SO:0002175	"An insertion that is the result of base-calling or assembly error." []	47034	\N	\N	sequence	0	SO	insertion_artifact	insertion_artifact
SO:0002172	SO:0002175	\N	"A sequence_alteration where the source of the alteration is due to an artifact in the base-calling or assembly process." []	SO:0002175	"An insertion that is the result of base-calling or assembly error." []	491847	\N	\N	sequence	1	SO	sequence_alteration_artifact	insertion_artifact
SO:0000413	SO:0002172	\N	"A region where the sequence differs from that of a specified sequence." [SO:ke]	SO:0002175	"An insertion that is the result of base-calling or assembly error." []	1074533	\N	SOFA	sequence	2	SO	sequence_difference	insertion_artifact
SO:0000700	SO:0000413	\N	"A comment about the sequence." [SO:ke]	SO:0002175	"An insertion that is the result of base-calling or assembly error." []	1905702	SOFA	SOFA	sequence	3	SO	remark	insertion_artifact
SO:0001410	SO:0000700	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0002175	"An insertion that is the result of base-calling or assembly error." []	2930128	SOFA	SOFA	sequence	4	SO	experimental_feature	insertion_artifact
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002175	"An insertion that is the result of base-calling or assembly error." []	4003132	SOFA	SOFA	sequence	5	SO	region	insertion_artifact
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002175	"An insertion that is the result of base-calling or assembly error." []	4967261	SOFA	SOFA	sequence	6	SO	sequence_feature	insertion_artifact
SO:0002176	\N	\N	"A substitution that is the result of base-calling or assembly error." []	SO:0002176	"A substitution that is the result of base-calling or assembly error." []	47035	\N	\N	sequence	0	SO	substitution_artifact	substitution_artifact
SO:0002172	SO:0002176	\N	"A sequence_alteration where the source of the alteration is due to an artifact in the base-calling or assembly process." []	SO:0002176	"A substitution that is the result of base-calling or assembly error." []	491848	\N	\N	sequence	1	SO	sequence_alteration_artifact	substitution_artifact
SO:0000413	SO:0002172	\N	"A region where the sequence differs from that of a specified sequence." [SO:ke]	SO:0002176	"A substitution that is the result of base-calling or assembly error." []	1074534	\N	SOFA	sequence	2	SO	sequence_difference	substitution_artifact
SO:0000700	SO:0000413	\N	"A comment about the sequence." [SO:ke]	SO:0002176	"A substitution that is the result of base-calling or assembly error." []	1905703	SOFA	SOFA	sequence	3	SO	remark	substitution_artifact
SO:0001410	SO:0000700	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0002176	"A substitution that is the result of base-calling or assembly error." []	2930129	SOFA	SOFA	sequence	4	SO	experimental_feature	substitution_artifact
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002176	"A substitution that is the result of base-calling or assembly error." []	4003133	SOFA	SOFA	sequence	5	SO	region	substitution_artifact
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002176	"A substitution that is the result of base-calling or assembly error." []	4967262	SOFA	SOFA	sequence	6	SO	sequence_feature	substitution_artifact
SO:0002177	\N	\N	"A duplication that is the result of base-calling or assembly error." []	SO:0002177	"A duplication that is the result of base-calling or assembly error." []	47036	\N	\N	sequence	0	SO	duplication_artifact	duplication_artifact
SO:0002175	SO:0002177	\N	"An insertion that is the result of base-calling or assembly error." []	SO:0002177	"A duplication that is the result of base-calling or assembly error." []	491849	\N	\N	sequence	1	SO	insertion_artifact	duplication_artifact
SO:0002172	SO:0002175	\N	"A sequence_alteration where the source of the alteration is due to an artifact in the base-calling or assembly process." []	SO:0002177	"A duplication that is the result of base-calling or assembly error." []	1074535	\N	\N	sequence	2	SO	sequence_alteration_artifact	duplication_artifact
SO:0000413	SO:0002172	\N	"A region where the sequence differs from that of a specified sequence." [SO:ke]	SO:0002177	"A duplication that is the result of base-calling or assembly error." []	1905704	\N	SOFA	sequence	3	SO	sequence_difference	duplication_artifact
SO:0000700	SO:0000413	\N	"A comment about the sequence." [SO:ke]	SO:0002177	"A duplication that is the result of base-calling or assembly error." []	2930130	SOFA	SOFA	sequence	4	SO	remark	duplication_artifact
SO:0001410	SO:0000700	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0002177	"A duplication that is the result of base-calling or assembly error." []	4003134	SOFA	SOFA	sequence	5	SO	experimental_feature	duplication_artifact
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002177	"A duplication that is the result of base-calling or assembly error." []	4967263	SOFA	SOFA	sequence	6	SO	region	duplication_artifact
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002177	"A duplication that is the result of base-calling or assembly error." []	5741720	SOFA	SOFA	sequence	7	SO	sequence_feature	duplication_artifact
SO:0002178	\N	\N	"An SNV that is the result of base-calling or assembly error." []	SO:0002178	"An SNV that is the result of base-calling or assembly error." []	47037	\N	\N	sequence	0	SO	SNV_artifact	SNV_artifact
SO:0002176	SO:0002178	\N	"A substitution that is the result of base-calling or assembly error." []	SO:0002178	"An SNV that is the result of base-calling or assembly error." []	491850	\N	\N	sequence	1	SO	substitution_artifact	SNV_artifact
SO:0002172	SO:0002176	\N	"A sequence_alteration where the source of the alteration is due to an artifact in the base-calling or assembly process." []	SO:0002178	"An SNV that is the result of base-calling or assembly error." []	1074536	\N	\N	sequence	2	SO	sequence_alteration_artifact	SNV_artifact
SO:0000413	SO:0002172	\N	"A region where the sequence differs from that of a specified sequence." [SO:ke]	SO:0002178	"An SNV that is the result of base-calling or assembly error." []	1905705	\N	SOFA	sequence	3	SO	sequence_difference	SNV_artifact
SO:0000700	SO:0000413	\N	"A comment about the sequence." [SO:ke]	SO:0002178	"An SNV that is the result of base-calling or assembly error." []	2930131	SOFA	SOFA	sequence	4	SO	remark	SNV_artifact
SO:0001410	SO:0000700	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0002178	"An SNV that is the result of base-calling or assembly error." []	4003135	SOFA	SOFA	sequence	5	SO	experimental_feature	SNV_artifact
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002178	"An SNV that is the result of base-calling or assembly error." []	4967264	SOFA	SOFA	sequence	6	SO	region	SNV_artifact
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002178	"An SNV that is the result of base-calling or assembly error." []	5741721	SOFA	SOFA	sequence	7	SO	sequence_feature	SNV_artifact
SO:0002179	\N	\N	"An MNV that is the result of base-calling or assembly error." []	SO:0002179	"An MNV that is the result of base-calling or assembly error." []	47038	\N	\N	sequence	0	SO	MNV_artifact	MNV_artifact
SO:0002176	SO:0002179	\N	"A substitution that is the result of base-calling or assembly error." []	SO:0002179	"An MNV that is the result of base-calling or assembly error." []	491851	\N	\N	sequence	1	SO	substitution_artifact	MNV_artifact
SO:0002172	SO:0002176	\N	"A sequence_alteration where the source of the alteration is due to an artifact in the base-calling or assembly process." []	SO:0002179	"An MNV that is the result of base-calling or assembly error." []	1074537	\N	\N	sequence	2	SO	sequence_alteration_artifact	MNV_artifact
SO:0000413	SO:0002172	\N	"A region where the sequence differs from that of a specified sequence." [SO:ke]	SO:0002179	"An MNV that is the result of base-calling or assembly error." []	1905706	\N	SOFA	sequence	3	SO	sequence_difference	MNV_artifact
SO:0000700	SO:0000413	\N	"A comment about the sequence." [SO:ke]	SO:0002179	"An MNV that is the result of base-calling or assembly error." []	2930132	SOFA	SOFA	sequence	4	SO	remark	MNV_artifact
SO:0001410	SO:0000700	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0002179	"An MNV that is the result of base-calling or assembly error." []	4003136	SOFA	SOFA	sequence	5	SO	experimental_feature	MNV_artifact
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002179	"An MNV that is the result of base-calling or assembly error." []	4967265	SOFA	SOFA	sequence	6	SO	region	MNV_artifact
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002179	"An MNV that is the result of base-calling or assembly error." []	5741722	SOFA	SOFA	sequence	7	SO	sequence_feature	MNV_artifact
SO:0002180	\N	\N	"A gene that encodes an enzymatic RNA." []	SO:0002180	"A gene that encodes an enzymatic RNA." []	47039	\N	\N	sequence	0	SO	enzymatic_RNA_gene	enzymatic_RNA_gene
SO:0001263	SO:0002180	\N	"A gene that encodes a non-coding RNA." []	SO:0002180	"A gene that encodes an enzymatic RNA." []	491852	\N	\N	sequence	1	SO	ncRNA_gene	enzymatic_RNA_gene
SO:0000704	SO:0001263	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0002180	"A gene that encodes an enzymatic RNA." []	1074538	\N	SOFA	sequence	2	SO	gene	enzymatic_RNA_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002180	"A gene that encodes an enzymatic RNA." []	1905707	SOFA	SOFA	sequence	3	SO	biological_region	enzymatic_RNA_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002180	"A gene that encodes an enzymatic RNA." []	2930133	SOFA	SOFA	sequence	4	SO	region	enzymatic_RNA_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002180	"A gene that encodes an enzymatic RNA." []	4003137	SOFA	SOFA	sequence	5	SO	sequence_feature	enzymatic_RNA_gene
SO:0002181	\N	\N	"A gene that encodes a ribozyme." []	SO:0002181	"A gene that encodes a ribozyme." []	47040	\N	\N	sequence	0	SO	ribozyme_gene	ribozyme_gene
SO:0002180	SO:0002181	\N	"A gene that encodes an enzymatic RNA." []	SO:0002181	"A gene that encodes a ribozyme." []	491853	\N	\N	sequence	1	SO	enzymatic_RNA_gene	ribozyme_gene
SO:0001263	SO:0002180	\N	"A gene that encodes a non-coding RNA." []	SO:0002181	"A gene that encodes a ribozyme." []	1074539	\N	\N	sequence	2	SO	ncRNA_gene	ribozyme_gene
SO:0000704	SO:0001263	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0002181	"A gene that encodes a ribozyme." []	1905708	\N	SOFA	sequence	3	SO	gene	ribozyme_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002181	"A gene that encodes a ribozyme." []	2930134	SOFA	SOFA	sequence	4	SO	biological_region	ribozyme_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002181	"A gene that encodes a ribozyme." []	4003138	SOFA	SOFA	sequence	5	SO	region	ribozyme_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002181	"A gene that encodes a ribozyme." []	4967266	SOFA	SOFA	sequence	6	SO	sequence_feature	ribozyme_gene
SO:0002182	\N	\N	"A gene that encodes an antisense long, non-coding RNA." []	SO:0002182	"A gene that encodes an antisense long, non-coding RNA." []	47041	\N	\N	sequence	0	SO	antisense_lncRNA_gene	antisense_lncRNA_gene
SO:0002127	SO:0002182	\N	"A gene that encodes a long non-coding RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002182	"A gene that encodes an antisense long, non-coding RNA." []	491854	\N	\N	sequence	1	SO	lncRNA_gene	antisense_lncRNA_gene
SO:0001263	SO:0002127	\N	"A gene that encodes a non-coding RNA." []	SO:0002182	"A gene that encodes an antisense long, non-coding RNA." []	1074540	\N	\N	sequence	2	SO	ncRNA_gene	antisense_lncRNA_gene
SO:0000704	SO:0001263	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0002182	"A gene that encodes an antisense long, non-coding RNA." []	1905709	\N	SOFA	sequence	3	SO	gene	antisense_lncRNA_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002182	"A gene that encodes an antisense long, non-coding RNA." []	2930135	SOFA	SOFA	sequence	4	SO	biological_region	antisense_lncRNA_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002182	"A gene that encodes an antisense long, non-coding RNA." []	4003139	SOFA	SOFA	sequence	5	SO	region	antisense_lncRNA_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002182	"A gene that encodes an antisense long, non-coding RNA." []	4967267	SOFA	SOFA	sequence	6	SO	sequence_feature	antisense_lncRNA_gene
SO:0002183	\N	\N	"A gene that encodes a sense overlap long non-coding RNA." []	SO:0002183	"A gene that encodes a sense overlap long non-coding RNA." []	47042	\N	\N	sequence	0	SO	sense_overlap_ncRNA_gene	sense_overlap_ncRNA_gene
SO:0002127	SO:0002183	\N	"A gene that encodes a long non-coding RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002183	"A gene that encodes a sense overlap long non-coding RNA." []	491855	\N	\N	sequence	1	SO	lncRNA_gene	sense_overlap_ncRNA_gene
SO:0001263	SO:0002127	\N	"A gene that encodes a non-coding RNA." []	SO:0002183	"A gene that encodes a sense overlap long non-coding RNA." []	1074541	\N	\N	sequence	2	SO	ncRNA_gene	sense_overlap_ncRNA_gene
SO:0000704	SO:0001263	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0002183	"A gene that encodes a sense overlap long non-coding RNA." []	1905710	\N	SOFA	sequence	3	SO	gene	sense_overlap_ncRNA_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002183	"A gene that encodes a sense overlap long non-coding RNA." []	2930136	SOFA	SOFA	sequence	4	SO	biological_region	sense_overlap_ncRNA_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002183	"A gene that encodes a sense overlap long non-coding RNA." []	4003140	SOFA	SOFA	sequence	5	SO	region	sense_overlap_ncRNA_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002183	"A gene that encodes a sense overlap long non-coding RNA." []	4967268	SOFA	SOFA	sequence	6	SO	sequence_feature	sense_overlap_ncRNA_gene
SO:0002184	\N	\N	"A gene that encodes a sense intronic long non-coding RNA." []	SO:0002184	"A gene that encodes a sense intronic long non-coding RNA." []	47043	\N	\N	sequence	0	SO	sense_intronic_ncRNA_gene	sense_intronic_ncRNA_gene
SO:0002127	SO:0002184	\N	"A gene that encodes a long non-coding RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002184	"A gene that encodes a sense intronic long non-coding RNA." []	491856	\N	\N	sequence	1	SO	lncRNA_gene	sense_intronic_ncRNA_gene
SO:0001263	SO:0002127	\N	"A gene that encodes a non-coding RNA." []	SO:0002184	"A gene that encodes a sense intronic long non-coding RNA." []	1074542	\N	\N	sequence	2	SO	ncRNA_gene	sense_intronic_ncRNA_gene
SO:0000704	SO:0001263	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0002184	"A gene that encodes a sense intronic long non-coding RNA." []	1905711	\N	SOFA	sequence	3	SO	gene	sense_intronic_ncRNA_gene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002184	"A gene that encodes a sense intronic long non-coding RNA." []	2930137	SOFA	SOFA	sequence	4	SO	biological_region	sense_intronic_ncRNA_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002184	"A gene that encodes a sense intronic long non-coding RNA." []	4003141	SOFA	SOFA	sequence	5	SO	region	sense_intronic_ncRNA_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002184	"A gene that encodes a sense intronic long non-coding RNA." []	4967269	SOFA	SOFA	sequence	6	SO	sequence_feature	sense_intronic_ncRNA_gene
SO:0002185	\N	\N	"A non-coding locus that originates from within the promoter region of a protein-coding gene, with transcription proceeding in the opposite direction on the other strand." [https://www.gencodegenes.org/gencode_biotypes.html]	SO:0002185	"A non-coding locus that originates from within the promoter region of a protein-coding gene, with transcription proceeding in the opposite direction on the other strand." [https://www.gencodegenes.org/gencode_biotypes.html]	47044	\N	\N	sequence	0	SO	bidirectional_promoter_lncRNA	bidirectional_promoter_lncRNA
SO:0002127	SO:0002185	\N	"A gene that encodes a long non-coding RNA." [GENCODE:http\\://www.gencodegenes.org/gencode_biotypes.html]	SO:0002185	"A non-coding locus that originates from within the promoter region of a protein-coding gene, with transcription proceeding in the opposite direction on the other strand." [https://www.gencodegenes.org/gencode_biotypes.html]	491857	\N	\N	sequence	1	SO	lncRNA_gene	bidirectional_promoter_lncRNA
SO:0001263	SO:0002127	\N	"A gene that encodes a non-coding RNA." []	SO:0002185	"A non-coding locus that originates from within the promoter region of a protein-coding gene, with transcription proceeding in the opposite direction on the other strand." [https://www.gencodegenes.org/gencode_biotypes.html]	1074543	\N	\N	sequence	2	SO	ncRNA_gene	bidirectional_promoter_lncRNA
SO:0000704	SO:0001263	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0002185	"A non-coding locus that originates from within the promoter region of a protein-coding gene, with transcription proceeding in the opposite direction on the other strand." [https://www.gencodegenes.org/gencode_biotypes.html]	1905712	\N	SOFA	sequence	3	SO	gene	bidirectional_promoter_lncRNA
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002185	"A non-coding locus that originates from within the promoter region of a protein-coding gene, with transcription proceeding in the opposite direction on the other strand." [https://www.gencodegenes.org/gencode_biotypes.html]	2930138	SOFA	SOFA	sequence	4	SO	biological_region	bidirectional_promoter_lncRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002185	"A non-coding locus that originates from within the promoter region of a protein-coding gene, with transcription proceeding in the opposite direction on the other strand." [https://www.gencodegenes.org/gencode_biotypes.html]	4003142	SOFA	SOFA	sequence	5	SO	region	bidirectional_promoter_lncRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002185	"A non-coding locus that originates from within the promoter region of a protein-coding gene, with transcription proceeding in the opposite direction on the other strand." [https://www.gencodegenes.org/gencode_biotypes.html]	4967270	SOFA	SOFA	sequence	6	SO	sequence_feature	bidirectional_promoter_lncRNA
SO:0002186	\N	\N	"A region of genomic sequence known to undergo mutational events with greater frequency than expected by chance." []	SO:0002186	"A region of genomic sequence known to undergo mutational events with greater frequency than expected by chance." []	47045	\N	\N	sequence	0	SO	mutational_hotspot	mutational_hotspot
SO:0001411	SO:0002186	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002186	"A region of genomic sequence known to undergo mutational events with greater frequency than expected by chance." []	491858	\N	SOFA	sequence	1	SO	biological_region	mutational_hotspot
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002186	"A region of genomic sequence known to undergo mutational events with greater frequency than expected by chance." []	1074544	SOFA	SOFA	sequence	2	SO	region	mutational_hotspot
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002186	"A region of genomic sequence known to undergo mutational events with greater frequency than expected by chance." []	1905713	SOFA	SOFA	sequence	3	SO	sequence_feature	mutational_hotspot
SO:0002187	\N	\N	"An insertion of sequence from the HERV family of mobile elements with respect to a reference." [NCBI:th]	SO:0002187	"An insertion of sequence from the HERV family of mobile elements with respect to a reference." [NCBI:th]	47046	\N	\N	sequence	0	SO	HERV_insertion	HERV_insertion
SO:0001837	SO:0002187	\N	"A kind of insertion where the inserted sequence is a mobile element." [EBI:dvga]	SO:0002187	"An insertion of sequence from the HERV family of mobile elements with respect to a reference." [NCBI:th]	491859	\N	\N	sequence	1	SO	mobile_element_insertion	HERV_insertion
SO:0000667	SO:0001837	\N	"The sequence of one or more nucleotides added between two adjacent nucleotides in the sequence." [SO:ke]	SO:0002187	"An insertion of sequence from the HERV family of mobile elements with respect to a reference." [NCBI:th]	1074545	\N	DBVAR,SOFA	sequence	2	SO	insertion	HERV_insertion
SO:0001059	SO:0000667	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:0002187	"An insertion of sequence from the HERV family of mobile elements with respect to a reference." [NCBI:th]	1905714	DBVAR,SOFA	SOFA	sequence	3	SO	sequence_alteration	HERV_insertion
SO:0001411	SO:0000667	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002187	"An insertion of sequence from the HERV family of mobile elements with respect to a reference." [NCBI:th]	1905715	DBVAR,SOFA	SOFA	sequence	3	SO	biological_region	HERV_insertion
SO:0002072	SO:0001059	\N	"" []	SO:0002187	"An insertion of sequence from the HERV family of mobile elements with respect to a reference." [NCBI:th]	2930139	SOFA	\N	sequence	4	SO	sequence_comparison	HERV_insertion
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002187	"An insertion of sequence from the HERV family of mobile elements with respect to a reference." [NCBI:th]	2930140	SOFA	SOFA	sequence	4	SO	region	HERV_insertion
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002187	"An insertion of sequence from the HERV family of mobile elements with respect to a reference." [NCBI:th]	4003143	\N	SOFA	sequence	5	SO	sequence_feature	HERV_insertion
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002187	"An insertion of sequence from the HERV family of mobile elements with respect to a reference." [NCBI:th]	4003144	SOFA	SOFA	sequence	5	SO	sequence_feature	HERV_insertion
SO:0002188	\N	\N	"A gene_member_region that encodes sequence that directly contributes to the molecular function of its gene or gene product." [Clingen:mb]	SO:0002188	"A gene_member_region that encodes sequence that directly contributes to the molecular function of its gene or gene product." [Clingen:mb]	47047	\N	\N	sequence	0	SO	functional_gene_region	functional_gene_region
SO:0000831	SO:0002188	\N	"A region of a gene." [SO:ke]	SO:0002188	"A gene_member_region that encodes sequence that directly contributes to the molecular function of its gene or gene product." [Clingen:mb]	491860	\N	SOFA	sequence	1	SO	gene_member_region	functional_gene_region
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0002188	"A gene_member_region that encodes sequence that directly contributes to the molecular function of its gene or gene product." [Clingen:mb]	1074546	SOFA	SOFA	sequence	2	SO	biological_region	functional_gene_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0002188	"A gene_member_region that encodes sequence that directly contributes to the molecular function of its gene or gene product." [Clingen:mb]	1905716	SOFA	SOFA	sequence	3	SO	region	functional_gene_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0002188	"A gene_member_region that encodes sequence that directly contributes to the molecular function of its gene or gene product." [Clingen:mb]	2930141	SOFA	SOFA	sequence	4	SO	sequence_feature	functional_gene_region
SO:0005836	\N	SOFA	"A region of sequence that is involved in the control of a biological process." [SO:ke]	SO:0005836	"A region of sequence that is involved in the control of a biological process." [SO:ke]	47048	\N	SOFA	sequence	0	SO	regulatory_region	regulatory_region
SO:0000831	SO:0005836	SOFA	"A region of a gene." [SO:ke]	SO:0005836	"A region of sequence that is involved in the control of a biological process." [SO:ke]	491861	SOFA	SOFA	sequence	1	SO	gene_member_region	regulatory_region
SO:0001411	SO:0000831	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0005836	"A region of sequence that is involved in the control of a biological process." [SO:ke]	1074547	SOFA	SOFA	sequence	2	SO	biological_region	regulatory_region
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0005836	"A region of sequence that is involved in the control of a biological process." [SO:ke]	1905717	SOFA	SOFA	sequence	3	SO	region	regulatory_region
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0005836	"A region of sequence that is involved in the control of a biological process." [SO:ke]	2930142	SOFA	SOFA	sequence	4	SO	sequence_feature	regulatory_region
SO:0005837	\N	\N	"The primary transcript of an evolutionarily conserved eukaryotic low molecular weight RNA capable of intermolecular hybridization with both homologous and heterologous 18S rRNA." [PMID:2251119]	SO:0005837	"The primary transcript of an evolutionarily conserved eukaryotic low molecular weight RNA capable of intermolecular hybridization with both homologous and heterologous 18S rRNA." [PMID:2251119]	47049	\N	\N	sequence	0	SO	U14_snoRNA_primary_transcript	U14_snoRNA_primary_transcript
SO:0000232	SO:0005837	\N	"A primary transcript encoding a small nucleolar mRNA (SO:0000275)." [SO:ke]	SO:0005837	"The primary transcript of an evolutionarily conserved eukaryotic low molecular weight RNA capable of intermolecular hybridization with both homologous and heterologous 18S rRNA." [PMID:2251119]	491862	\N	\N	sequence	1	SO	snoRNA_primary_transcript	U14_snoRNA_primary_transcript
SO:0000483	SO:0000232	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0005837	"The primary transcript of an evolutionarily conserved eukaryotic low molecular weight RNA capable of intermolecular hybridization with both homologous and heterologous 18S rRNA." [PMID:2251119]	1074548	\N	SOFA	sequence	2	SO	nc_primary_transcript	U14_snoRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0005837	"The primary transcript of an evolutionarily conserved eukaryotic low molecular weight RNA capable of intermolecular hybridization with both homologous and heterologous 18S rRNA." [PMID:2251119]	1905718	SOFA	SOFA	sequence	3	SO	primary_transcript	U14_snoRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0005837	"The primary transcript of an evolutionarily conserved eukaryotic low molecular weight RNA capable of intermolecular hybridization with both homologous and heterologous 18S rRNA." [PMID:2251119]	2930143	SOFA	SOFA	sequence	4	SO	transcript	U14_snoRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0005837	"The primary transcript of an evolutionarily conserved eukaryotic low molecular weight RNA capable of intermolecular hybridization with both homologous and heterologous 18S rRNA." [PMID:2251119]	4003145	SOFA	SOFA	sequence	5	SO	gene_member_region	U14_snoRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0005837	"The primary transcript of an evolutionarily conserved eukaryotic low molecular weight RNA capable of intermolecular hybridization with both homologous and heterologous 18S rRNA." [PMID:2251119]	4967271	SOFA	SOFA	sequence	6	SO	biological_region	U14_snoRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0005837	"The primary transcript of an evolutionarily conserved eukaryotic low molecular weight RNA capable of intermolecular hybridization with both homologous and heterologous 18S rRNA." [PMID:2251119]	5741723	SOFA	SOFA	sequence	7	SO	region	U14_snoRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0005837	"The primary transcript of an evolutionarily conserved eukaryotic low molecular weight RNA capable of intermolecular hybridization with both homologous and heterologous 18S rRNA." [PMID:2251119]	6311357	SOFA	SOFA	sequence	8	SO	sequence_feature	U14_snoRNA_primary_transcript
SO:0005841	\N	\N	"A snoRNA that specifies the site of 2'-O-ribose methylation in an RNA molecule by base pairing with a short sequence around the target residue." [GOC:mah, PMID:12457565]	SO:0005841	"A snoRNA that specifies the site of 2'-O-ribose methylation in an RNA molecule by base pairing with a short sequence around the target residue." [GOC:mah, PMID:12457565]	47050	\N	\N	sequence	0	SO	methylation_guide_snoRNA	methylation_guide_snoRNA
SO:0000593	SO:0005841	\N	"Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'." [http://www.bio.umass.edu/biochem/rna-sequence/Yeast_snoRNA_Database/snoRNA_DataBase.html]	SO:0005841	"A snoRNA that specifies the site of 2'-O-ribose methylation in an RNA molecule by base pairing with a short sequence around the target residue." [GOC:mah, PMID:12457565]	491863	\N	SOFA	sequence	1	SO	C_D_box_snoRNA	methylation_guide_snoRNA
SO:0000275	SO:0000593	\N	"A snoRNA (small nucleolar RNA) is any one of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA." [GOC:kgc]	SO:0005841	"A snoRNA that specifies the site of 2'-O-ribose methylation in an RNA molecule by base pairing with a short sequence around the target residue." [GOC:mah, PMID:12457565]	1074549	SOFA	SOFA	sequence	2	SO	snoRNA	methylation_guide_snoRNA
SO:0000655	SO:0000275	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0005841	"A snoRNA that specifies the site of 2'-O-ribose methylation in an RNA molecule by base pairing with a short sequence around the target residue." [GOC:mah, PMID:12457565]	1905719	SOFA	SOFA	sequence	3	SO	ncRNA	methylation_guide_snoRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0005841	"A snoRNA that specifies the site of 2'-O-ribose methylation in an RNA molecule by base pairing with a short sequence around the target residue." [GOC:mah, PMID:12457565]	2930144	SOFA	SOFA	sequence	4	SO	mature_transcript	methylation_guide_snoRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0005841	"A snoRNA that specifies the site of 2'-O-ribose methylation in an RNA molecule by base pairing with a short sequence around the target residue." [GOC:mah, PMID:12457565]	4003146	SOFA	SOFA	sequence	5	SO	transcript	methylation_guide_snoRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0005841	"A snoRNA that specifies the site of 2'-O-ribose methylation in an RNA molecule by base pairing with a short sequence around the target residue." [GOC:mah, PMID:12457565]	4967272	SOFA	SOFA	sequence	6	SO	gene_member_region	methylation_guide_snoRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0005841	"A snoRNA that specifies the site of 2'-O-ribose methylation in an RNA molecule by base pairing with a short sequence around the target residue." [GOC:mah, PMID:12457565]	5741724	SOFA	SOFA	sequence	7	SO	biological_region	methylation_guide_snoRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0005841	"A snoRNA that specifies the site of 2'-O-ribose methylation in an RNA molecule by base pairing with a short sequence around the target residue." [GOC:mah, PMID:12457565]	6311358	SOFA	SOFA	sequence	8	SO	region	methylation_guide_snoRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0005841	"A snoRNA that specifies the site of 2'-O-ribose methylation in an RNA molecule by base pairing with a short sequence around the target residue." [GOC:mah, PMID:12457565]	6699560	SOFA	SOFA	sequence	9	SO	sequence_feature	methylation_guide_snoRNA
SO:0005843	\N	\N	"An ncRNA that is part of a ribonucleoprotein that cleaves the primary pre-rRNA transcript in the process of producing mature rRNA molecules." [GOC:kgc]	SO:0005843	"An ncRNA that is part of a ribonucleoprotein that cleaves the primary pre-rRNA transcript in the process of producing mature rRNA molecules." [GOC:kgc]	47051	\N	\N	sequence	0	SO	rRNA_cleavage_RNA	rRNA_cleavage_RNA
SO:0000655	SO:0005843	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0005843	"An ncRNA that is part of a ribonucleoprotein that cleaves the primary pre-rRNA transcript in the process of producing mature rRNA molecules." [GOC:kgc]	491864	\N	SOFA	sequence	1	SO	ncRNA	rRNA_cleavage_RNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0005843	"An ncRNA that is part of a ribonucleoprotein that cleaves the primary pre-rRNA transcript in the process of producing mature rRNA molecules." [GOC:kgc]	1074550	SOFA	SOFA	sequence	2	SO	mature_transcript	rRNA_cleavage_RNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0005843	"An ncRNA that is part of a ribonucleoprotein that cleaves the primary pre-rRNA transcript in the process of producing mature rRNA molecules." [GOC:kgc]	1905720	SOFA	SOFA	sequence	3	SO	transcript	rRNA_cleavage_RNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0005843	"An ncRNA that is part of a ribonucleoprotein that cleaves the primary pre-rRNA transcript in the process of producing mature rRNA molecules." [GOC:kgc]	2930145	SOFA	SOFA	sequence	4	SO	gene_member_region	rRNA_cleavage_RNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0005843	"An ncRNA that is part of a ribonucleoprotein that cleaves the primary pre-rRNA transcript in the process of producing mature rRNA molecules." [GOC:kgc]	4003147	SOFA	SOFA	sequence	5	SO	biological_region	rRNA_cleavage_RNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0005843	"An ncRNA that is part of a ribonucleoprotein that cleaves the primary pre-rRNA transcript in the process of producing mature rRNA molecules." [GOC:kgc]	4967273	SOFA	SOFA	sequence	6	SO	region	rRNA_cleavage_RNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0005843	"An ncRNA that is part of a ribonucleoprotein that cleaves the primary pre-rRNA transcript in the process of producing mature rRNA molecules." [GOC:kgc]	5741725	SOFA	SOFA	sequence	7	SO	sequence_feature	rRNA_cleavage_RNA
SO:0005845	\N	\N	"An exon that is the only exon in a gene." [RSC:cb]	SO:0005845	"An exon that is the only exon in a gene." [RSC:cb]	47052	\N	\N	sequence	0	SO	exon_of_single_exon_gene	exon_of_single_exon_gene
SO:0000147	SO:0005845	\N	"A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing." [SO:ke]	SO:0005845	"An exon that is the only exon in a gene." [RSC:cb]	491865	\N	SOFA	sequence	1	SO	exon	exon_of_single_exon_gene
SO:0000833	SO:0000147	\N	"A region of a transcript." [SO:ke]	SO:0005845	"An exon that is the only exon in a gene." [RSC:cb]	1074551	SOFA	SOFA	sequence	2	SO	transcript_region	exon_of_single_exon_gene
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0005845	"An exon that is the only exon in a gene." [RSC:cb]	1905721	SOFA	SOFA	sequence	3	SO	transcript	exon_of_single_exon_gene
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0005845	"An exon that is the only exon in a gene." [RSC:cb]	1905722	SOFA	SOFA	sequence	3	SO	biological_region	exon_of_single_exon_gene
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0005845	"An exon that is the only exon in a gene." [RSC:cb]	2930146	SOFA	SOFA	sequence	4	SO	gene_member_region	exon_of_single_exon_gene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0005845	"An exon that is the only exon in a gene." [RSC:cb]	4967274	SOFA	SOFA	sequence	6	SO	region	exon_of_single_exon_gene
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0005845	"An exon that is the only exon in a gene." [RSC:cb]	4003148	SOFA	SOFA	sequence	5	SO	biological_region	exon_of_single_exon_gene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0005845	"An exon that is the only exon in a gene." [RSC:cb]	5180774	SOFA	SOFA	sequence	7	SO	sequence_feature	exon_of_single_exon_gene
SO:0005847	\N	\N	"" []	SO:0005847	"" []	47053	\N	\N	sequence	0	SO	cassette_array_member	cassette_array_member
SO:0005848	SO:0005847	\N	"" []	SO:0005847	"" []	491866	\N	\N	sequence	1	SO	gene_cassette_member	cassette_array_member
SO:0000081	SO:0005848	\N	"" []	SO:0005847	"" []	1074552	\N	\N	sequence	2	SO	gene_array_member	cassette_array_member
SO:0000401	SO:0000081	\N	"" []	SO:0005847	"" []	1905723	\N	\N	sequence	3	SO	gene_attribute	cassette_array_member
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0005847	"" []	2930148	\N	\N	sequence	4	SO	feature_attribute	cassette_array_member
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0005847	"" []	4003150	\N	\N	sequence	5	SO	sequence_attribute	cassette_array_member
SO:0005848	\N	\N	"" []	SO:0005848	"" []	47054	\N	\N	sequence	0	SO	gene_cassette_member	gene_cassette_member
SO:0000081	SO:0005848	\N	"" []	SO:0005848	"" []	491867	\N	\N	sequence	1	SO	gene_array_member	gene_cassette_member
SO:0000401	SO:0000081	\N	"" []	SO:0005848	"" []	1074553	\N	\N	sequence	2	SO	gene_attribute	gene_cassette_member
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0005848	"" []	1905724	\N	\N	sequence	3	SO	feature_attribute	gene_cassette_member
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0005848	"" []	2930149	\N	\N	sequence	4	SO	sequence_attribute	gene_cassette_member
SO:0005849	\N	\N	"" []	SO:0005849	"" []	47055	\N	\N	sequence	0	SO	gene_subarray_member	gene_subarray_member
SO:0000081	SO:0005849	\N	"" []	SO:0005849	"" []	491868	\N	\N	sequence	1	SO	gene_array_member	gene_subarray_member
SO:0000401	SO:0000081	\N	"" []	SO:0005849	"" []	1074554	\N	\N	sequence	2	SO	gene_attribute	gene_subarray_member
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:0005849	"" []	1905725	\N	\N	sequence	3	SO	feature_attribute	gene_subarray_member
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:0005849	"" []	2930150	\N	\N	sequence	4	SO	sequence_attribute	gene_subarray_member
SO:0005850	\N	\N	"Non-covalent primer binding site for initiation of replication, transcription, or reverse transcription." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0005850	"Non-covalent primer binding site for initiation of replication, transcription, or reverse transcription." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	47056	\N	\N	sequence	0	SO	primer_binding_site	primer_binding_site
SO:0000186	SO:0005850	\N	"A retrotransposon flanked by long terminal repeat sequences." [SO:ke]	SO:0005850	"Non-covalent primer binding site for initiation of replication, transcription, or reverse transcription." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	491869	\N	\N	sequence	1	SO	LTR_retrotransposon	primer_binding_site
SO:0001655	SO:0005850	\N	"A binding site that, in the molecule, interacts selectively and non-covalently with nucleotide residues." [SO:cb]	SO:0005850	"Non-covalent primer binding site for initiation of replication, transcription, or reverse transcription." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	491870	\N	\N	sequence	1	SO	nucleotide_binding_site	primer_binding_site
SO:0000180	SO:0000186	\N	"A transposable element that is incorporated into a chromosome by a mechanism that requires reverse transcriptase." [http://www.dddmag.com/Glossary.aspx#r]	SO:0005850	"Non-covalent primer binding site for initiation of replication, transcription, or reverse transcription." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1074555	\N	\N	sequence	2	SO	retrotransposon	primer_binding_site
SO:0000409	SO:0001655	\N	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0005850	"Non-covalent primer binding site for initiation of replication, transcription, or reverse transcription." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1074556	\N	biosapiens,SOFA	sequence	2	SO	binding_site	primer_binding_site
SO:0000101	SO:0000180	\N	"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences." [http://www.sci.sdsu.edu/~smaloy/Glossary/T.html]	SO:0005850	"Non-covalent primer binding site for initiation of replication, transcription, or reverse transcription." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1905726	\N	SOFA	sequence	3	SO	transposable_element	primer_binding_site
SO:0001411	SO:0000409	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0005850	"Non-covalent primer binding site for initiation of replication, transcription, or reverse transcription." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	1905727	biosapiens,SOFA	SOFA	sequence	3	SO	biological_region	primer_binding_site
SO:0001039	SO:0000101	\N	"An MGE that is integrated into the host chromosome." [SO:ke]	SO:0005850	"Non-covalent primer binding site for initiation of replication, transcription, or reverse transcription." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	2930151	SOFA	SOFA	sequence	4	SO	integrated_mobile_genetic_element	primer_binding_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0005850	"Non-covalent primer binding site for initiation of replication, transcription, or reverse transcription." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	5741726	SOFA	SOFA	sequence	7	SO	region	primer_binding_site
SO:0001037	SO:0001039	\N	"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome." [PMID:14681355]	SO:0005850	"Non-covalent primer binding site for initiation of replication, transcription, or reverse transcription." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4003151	SOFA	SOFA	sequence	5	SO	mobile_genetic_element	primer_binding_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0005850	"Non-covalent primer binding site for initiation of replication, transcription, or reverse transcription." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	5876472	SOFA	SOFA	sequence	8	SO	sequence_feature	primer_binding_site
SO:0001411	SO:0001037	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0005850	"Non-covalent primer binding site for initiation of replication, transcription, or reverse transcription." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	4967275	SOFA	SOFA	sequence	6	SO	biological_region	primer_binding_site
SO:0005851	\N	\N	"An array includes two or more genes, or two or more gene subarrays, contiguously arranged where the individual genes, or subarrays, are either identical in sequence, or essentially so." [SO:ma]	SO:0005851	"An array includes two or more genes, or two or more gene subarrays, contiguously arranged where the individual genes, or subarrays, are either identical in sequence, or essentially so." [SO:ma]	47057	\N	\N	sequence	0	SO	gene_array	gene_array
SO:0005855	SO:0005851	\N	"A collection of related genes." [SO:ma]	SO:0005851	"An array includes two or more genes, or two or more gene subarrays, contiguously arranged where the individual genes, or subarrays, are either identical in sequence, or essentially so." [SO:ma]	491871	\N	SOFA	sequence	1	SO	gene_group	gene_array
SO:0001411	SO:0005855	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0005851	"An array includes two or more genes, or two or more gene subarrays, contiguously arranged where the individual genes, or subarrays, are either identical in sequence, or essentially so." [SO:ma]	1074557	SOFA	SOFA	sequence	2	SO	biological_region	gene_array
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0005851	"An array includes two or more genes, or two or more gene subarrays, contiguously arranged where the individual genes, or subarrays, are either identical in sequence, or essentially so." [SO:ma]	1905728	SOFA	SOFA	sequence	3	SO	region	gene_array
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0005851	"An array includes two or more genes, or two or more gene subarrays, contiguously arranged where the individual genes, or subarrays, are either identical in sequence, or essentially so." [SO:ma]	2930153	SOFA	SOFA	sequence	4	SO	sequence_feature	gene_array
SO:0005852	\N	\N	"A subarray is, by defintition, a member of a gene array (SO:0005851); the members of a subarray may differ substantially in sequence, but are closely related in function." [SO:ma]	SO:0005852	"A subarray is, by defintition, a member of a gene array (SO:0005851); the members of a subarray may differ substantially in sequence, but are closely related in function." [SO:ma]	47058	\N	\N	sequence	0	SO	gene_subarray	gene_subarray
SO:0005855	SO:0005852	\N	"A collection of related genes." [SO:ma]	SO:0005852	"A subarray is, by defintition, a member of a gene array (SO:0005851); the members of a subarray may differ substantially in sequence, but are closely related in function." [SO:ma]	491872	\N	SOFA	sequence	1	SO	gene_group	gene_subarray
SO:0001411	SO:0005855	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0005852	"A subarray is, by defintition, a member of a gene array (SO:0005851); the members of a subarray may differ substantially in sequence, but are closely related in function." [SO:ma]	1074558	SOFA	SOFA	sequence	2	SO	biological_region	gene_subarray
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0005852	"A subarray is, by defintition, a member of a gene array (SO:0005851); the members of a subarray may differ substantially in sequence, but are closely related in function." [SO:ma]	1905729	SOFA	SOFA	sequence	3	SO	region	gene_subarray
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0005852	"A subarray is, by defintition, a member of a gene array (SO:0005851); the members of a subarray may differ substantially in sequence, but are closely related in function." [SO:ma]	2930154	SOFA	SOFA	sequence	4	SO	sequence_feature	gene_subarray
SO:0005853	\N	\N	"A gene that can be substituted for a related gene at a different site in the genome." [SGD:se]	SO:0005853	"A gene that can be substituted for a related gene at a different site in the genome." [SGD:se]	47059	\N	\N	sequence	0	SO	gene_cassette	gene_cassette
SO:0000704	SO:0005853	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:0005853	"A gene that can be substituted for a related gene at a different site in the genome." [SGD:se]	491873	\N	SOFA	sequence	1	SO	gene	gene_cassette
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0005853	"A gene that can be substituted for a related gene at a different site in the genome." [SGD:se]	1074559	SOFA	SOFA	sequence	2	SO	biological_region	gene_cassette
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0005853	"A gene that can be substituted for a related gene at a different site in the genome." [SGD:se]	1905730	SOFA	SOFA	sequence	3	SO	region	gene_cassette
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0005853	"A gene that can be substituted for a related gene at a different site in the genome." [SGD:se]	2930155	SOFA	SOFA	sequence	4	SO	sequence_feature	gene_cassette
SO:0005854	\N	\N	"An array of non-functional genes whose members, when captured by recombination form functional genes." [SO:ma]	SO:0005854	"An array of non-functional genes whose members, when captured by recombination form functional genes." [SO:ma]	47060	\N	\N	sequence	0	SO	gene_cassette_array	gene_cassette_array
SO:0005855	SO:0005854	\N	"A collection of related genes." [SO:ma]	SO:0005854	"An array of non-functional genes whose members, when captured by recombination form functional genes." [SO:ma]	491874	\N	SOFA	sequence	1	SO	gene_group	gene_cassette_array
SO:0001411	SO:0005855	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0005854	"An array of non-functional genes whose members, when captured by recombination form functional genes." [SO:ma]	1074560	SOFA	SOFA	sequence	2	SO	biological_region	gene_cassette_array
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0005854	"An array of non-functional genes whose members, when captured by recombination form functional genes." [SO:ma]	1905731	SOFA	SOFA	sequence	3	SO	region	gene_cassette_array
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0005854	"An array of non-functional genes whose members, when captured by recombination form functional genes." [SO:ma]	2930156	SOFA	SOFA	sequence	4	SO	sequence_feature	gene_cassette_array
SO:0005855	\N	SOFA	"A collection of related genes." [SO:ma]	SO:0005855	"A collection of related genes." [SO:ma]	47061	\N	SOFA	sequence	0	SO	gene_group	gene_group
SO:0001411	SO:0005855	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0005855	"A collection of related genes." [SO:ma]	491875	SOFA	SOFA	sequence	1	SO	biological_region	gene_group
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0005855	"A collection of related genes." [SO:ma]	1074561	SOFA	SOFA	sequence	2	SO	region	gene_group
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0005855	"A collection of related genes." [SO:ma]	1905732	SOFA	SOFA	sequence	3	SO	sequence_feature	gene_group
SO:0005856	\N	\N	"A primary transcript encoding seryl tRNA (SO:000269)." [SO:ke]	SO:0005856	"A primary transcript encoding seryl tRNA (SO:000269)." [SO:ke]	47062	\N	\N	sequence	0	SO	selenocysteine_tRNA_primary_transcript	selenocysteine_tRNA_primary_transcript
SO:0000210	SO:0005856	\N	"A primary transcript encoding a transfer RNA (SO:0000253)." [SO:ke]	SO:0005856	"A primary transcript encoding seryl tRNA (SO:000269)." [SO:ke]	491876	\N	\N	sequence	1	SO	tRNA_primary_transcript	selenocysteine_tRNA_primary_transcript
SO:0000483	SO:0000210	\N	"A primary transcript that is never translated into a protein." [SO:ke]	SO:0005856	"A primary transcript encoding seryl tRNA (SO:000269)." [SO:ke]	1074562	\N	SOFA	sequence	2	SO	nc_primary_transcript	selenocysteine_tRNA_primary_transcript
SO:0000185	SO:0000483	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:0005856	"A primary transcript encoding seryl tRNA (SO:000269)." [SO:ke]	1905733	SOFA	SOFA	sequence	3	SO	primary_transcript	selenocysteine_tRNA_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0005856	"A primary transcript encoding seryl tRNA (SO:000269)." [SO:ke]	2930157	SOFA	SOFA	sequence	4	SO	transcript	selenocysteine_tRNA_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0005856	"A primary transcript encoding seryl tRNA (SO:000269)." [SO:ke]	4003153	SOFA	SOFA	sequence	5	SO	gene_member_region	selenocysteine_tRNA_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0005856	"A primary transcript encoding seryl tRNA (SO:000269)." [SO:ke]	4967276	SOFA	SOFA	sequence	6	SO	biological_region	selenocysteine_tRNA_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0005856	"A primary transcript encoding seryl tRNA (SO:000269)." [SO:ke]	5741727	SOFA	SOFA	sequence	7	SO	region	selenocysteine_tRNA_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0005856	"A primary transcript encoding seryl tRNA (SO:000269)." [SO:ke]	6311359	SOFA	SOFA	sequence	8	SO	sequence_feature	selenocysteine_tRNA_primary_transcript
SO:0005857	\N	\N	"A tRNA sequence that has a selenocysteine anticodon, and a 3' selenocysteine binding region." [SO:ke]	SO:0005857	"A tRNA sequence that has a selenocysteine anticodon, and a 3' selenocysteine binding region." [SO:ke]	47063	\N	\N	sequence	0	SO	selenocysteinyl_tRNA	selenocysteinyl_tRNA
SO:0000253	SO:0005857	\N	"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732]	SO:0005857	"A tRNA sequence that has a selenocysteine anticodon, and a 3' selenocysteine binding region." [SO:ke]	491877	\N	SOFA	sequence	1	SO	tRNA	selenocysteinyl_tRNA
SO:0000655	SO:0000253	\N	"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product." [SO:ke]	SO:0005857	"A tRNA sequence that has a selenocysteine anticodon, and a 3' selenocysteine binding region." [SO:ke]	1074563	SOFA	SOFA	sequence	2	SO	ncRNA	selenocysteinyl_tRNA
SO:0000233	SO:0000655	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:0005857	"A tRNA sequence that has a selenocysteine anticodon, and a 3' selenocysteine binding region." [SO:ke]	1905734	SOFA	SOFA	sequence	3	SO	mature_transcript	selenocysteinyl_tRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:0005857	"A tRNA sequence that has a selenocysteine anticodon, and a 3' selenocysteine binding region." [SO:ke]	2930158	SOFA	SOFA	sequence	4	SO	transcript	selenocysteinyl_tRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:0005857	"A tRNA sequence that has a selenocysteine anticodon, and a 3' selenocysteine binding region." [SO:ke]	4003154	SOFA	SOFA	sequence	5	SO	gene_member_region	selenocysteinyl_tRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0005857	"A tRNA sequence that has a selenocysteine anticodon, and a 3' selenocysteine binding region." [SO:ke]	4967277	SOFA	SOFA	sequence	6	SO	biological_region	selenocysteinyl_tRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0005857	"A tRNA sequence that has a selenocysteine anticodon, and a 3' selenocysteine binding region." [SO:ke]	5741728	SOFA	SOFA	sequence	7	SO	region	selenocysteinyl_tRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0005857	"A tRNA sequence that has a selenocysteine anticodon, and a 3' selenocysteine binding region." [SO:ke]	6311360	SOFA	SOFA	sequence	8	SO	sequence_feature	selenocysteinyl_tRNA
SO:0005858	\N	\N	"A region in which two or more pairs of homologous markers occur on the same chromosome in two or more species." [http://www.informatics.jax.org/silverbook/glossary.shtml]	SO:0005858	"A region in which two or more pairs of homologous markers occur on the same chromosome in two or more species." [http://www.informatics.jax.org/silverbook/glossary.shtml]	47064	\N	\N	sequence	0	SO	syntenic_region	syntenic_region
SO:0000330	SO:0005858	\N	"Region of sequence similarity by descent from a common ancestor." [SO:ke]	SO:0005858	"A region in which two or more pairs of homologous markers occur on the same chromosome in two or more species." [http://www.informatics.jax.org/silverbook/glossary.shtml]	491878	\N	SOFA	sequence	1	SO	conserved_region	syntenic_region
SO:0001410	SO:0000330	\N	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0005858	"A region in which two or more pairs of homologous markers occur on the same chromosome in two or more species." [http://www.informatics.jax.org/silverbook/glossary.shtml]	1074564	SOFA	SOFA	sequence	2	SO	experimental_feature	syntenic_region
SO:0000001	SO:0001410	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0005858	"A region in which two or more pairs of homologous markers occur on the same chromosome in two or more species." [http://www.informatics.jax.org/silverbook/glossary.shtml]	1905735	SOFA	SOFA	sequence	3	SO	region	syntenic_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0005858	"A region in which two or more pairs of homologous markers occur on the same chromosome in two or more species." [http://www.informatics.jax.org/silverbook/glossary.shtml]	2930159	SOFA	SOFA	sequence	4	SO	sequence_feature	syntenic_region
SO:0100001	\N	biosapiens	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0100001	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	47065	\N	biosapiens	sequence	0	SO	biochemical_region_of_peptide	biochemical_region_of_peptide
SO:0001067	SO:0100001	biosapiens	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0100001	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	491879	biosapiens	biosapiens	sequence	1	SO	polypeptide_motif	biochemical_region_of_peptide
SO:0100021	SO:0001067	biosapiens	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0100001	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	1074565	biosapiens	biosapiens	sequence	2	SO	polypeptide_conserved_region	biochemical_region_of_peptide
SO:0000839	SO:0100021	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0100001	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	1905736	biosapiens	biosapiens,SOFA	sequence	3	SO	polypeptide_region	biochemical_region_of_peptide
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0100001	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	2930160	biosapiens,SOFA	SOFA	sequence	4	SO	polypeptide	biochemical_region_of_peptide
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100001	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	2930161	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	biochemical_region_of_peptide
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100001	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	4003155	SOFA	SOFA	sequence	5	SO	biological_region	biochemical_region_of_peptide
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0100001	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	4967278	SOFA	SOFA	sequence	6	SO	region	biochemical_region_of_peptide
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0100001	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	5407512	SOFA	SOFA	sequence	7	SO	sequence_feature	biochemical_region_of_peptide
SO:0100002	\N	biosapiens	"A region that is involved a contact with another molecule." [EBIBS:GAR]	SO:0100002	"A region that is involved a contact with another molecule." [EBIBS:GAR]	47066	\N	biosapiens	sequence	0	SO	molecular_contact_region	molecular_contact_region
SO:0100001	SO:0100002	biosapiens	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0100002	"A region that is involved a contact with another molecule." [EBIBS:GAR]	491880	biosapiens	biosapiens	sequence	1	SO	biochemical_region_of_peptide	molecular_contact_region
SO:0001067	SO:0100001	biosapiens	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0100002	"A region that is involved a contact with another molecule." [EBIBS:GAR]	1074566	biosapiens	biosapiens	sequence	2	SO	polypeptide_motif	molecular_contact_region
SO:0100021	SO:0001067	biosapiens	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0100002	"A region that is involved a contact with another molecule." [EBIBS:GAR]	1905737	biosapiens	biosapiens	sequence	3	SO	polypeptide_conserved_region	molecular_contact_region
SO:0000839	SO:0100021	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0100002	"A region that is involved a contact with another molecule." [EBIBS:GAR]	2930162	biosapiens	biosapiens,SOFA	sequence	4	SO	polypeptide_region	molecular_contact_region
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0100002	"A region that is involved a contact with another molecule." [EBIBS:GAR]	4003157	biosapiens,SOFA	SOFA	sequence	5	SO	polypeptide	molecular_contact_region
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100002	"A region that is involved a contact with another molecule." [EBIBS:GAR]	4003158	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	molecular_contact_region
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100002	"A region that is involved a contact with another molecule." [EBIBS:GAR]	4967280	SOFA	SOFA	sequence	6	SO	biological_region	molecular_contact_region
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0100002	"A region that is involved a contact with another molecule." [EBIBS:GAR]	5741729	SOFA	SOFA	sequence	7	SO	region	molecular_contact_region
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0100002	"A region that is involved a contact with another molecule." [EBIBS:GAR]	6146697	SOFA	SOFA	sequence	8	SO	sequence_feature	molecular_contact_region
SO:0100003	\N	biosapiens	"A region of polypeptide chain with high conformational flexibility." [EBIBS:GAR]	SO:0100003	"A region of polypeptide chain with high conformational flexibility." [EBIBS:GAR]	47067	\N	biosapiens	sequence	0	SO	intrinsically_unstructured_polypeptide_region	intrinsically_unstructured_polypeptide_region
SO:0001070	SO:0100003	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0100003	"A region of polypeptide chain with high conformational flexibility." [EBIBS:GAR]	491881	biosapiens	biosapiens	sequence	1	SO	polypeptide_structural_region	intrinsically_unstructured_polypeptide_region
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0100003	"A region of polypeptide chain with high conformational flexibility." [EBIBS:GAR]	1074567	biosapiens	biosapiens,SOFA	sequence	2	SO	polypeptide_region	intrinsically_unstructured_polypeptide_region
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0100003	"A region of polypeptide chain with high conformational flexibility." [EBIBS:GAR]	1905738	biosapiens,SOFA	SOFA	sequence	3	SO	polypeptide	intrinsically_unstructured_polypeptide_region
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100003	"A region of polypeptide chain with high conformational flexibility." [EBIBS:GAR]	1905739	biosapiens,SOFA	SOFA	sequence	3	SO	biological_region	intrinsically_unstructured_polypeptide_region
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100003	"A region of polypeptide chain with high conformational flexibility." [EBIBS:GAR]	2930163	SOFA	SOFA	sequence	4	SO	biological_region	intrinsically_unstructured_polypeptide_region
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0100003	"A region of polypeptide chain with high conformational flexibility." [EBIBS:GAR]	4003159	SOFA	SOFA	sequence	5	SO	region	intrinsically_unstructured_polypeptide_region
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0100003	"A region of polypeptide chain with high conformational flexibility." [EBIBS:GAR]	4385895	SOFA	SOFA	sequence	6	SO	sequence_feature	intrinsically_unstructured_polypeptide_region
SO:0100004	\N	biosapiens	"A motif of 3 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -75 bounds -100 to -50, res i+1: psi 140 bounds 110 to 170. An extra restriction of the length of the O to O distance would be useful, that it be less than 5 Angstrom. More precisely these two oxygens are the main chain carbonyl oxygen atoms of residues i-1 and i+1." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0100004	"A motif of 3 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -75 bounds -100 to -50, res i+1: psi 140 bounds 110 to 170. An extra restriction of the length of the O to O distance would be useful, that it be less than 5 Angstrom. More precisely these two oxygens are the main chain carbonyl oxygen atoms of residues i-1 and i+1." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	47068	\N	biosapiens	sequence	0	SO	catmat_left_handed_three	catmat_left_handed_three
SO:0001078	SO:0100004	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0100004	"A motif of 3 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -75 bounds -100 to -50, res i+1: psi 140 bounds 110 to 170. An extra restriction of the length of the O to O distance would be useful, that it be less than 5 Angstrom. More precisely these two oxygens are the main chain carbonyl oxygen atoms of residues i-1 and i+1." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	491882	biosapiens	biosapiens	sequence	1	SO	polypeptide_secondary_structure	catmat_left_handed_three
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0100004	"A motif of 3 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -75 bounds -100 to -50, res i+1: psi 140 bounds 110 to 170. An extra restriction of the length of the O to O distance would be useful, that it be less than 5 Angstrom. More precisely these two oxygens are the main chain carbonyl oxygen atoms of residues i-1 and i+1." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1074568	biosapiens	biosapiens	sequence	2	SO	polypeptide_structural_region	catmat_left_handed_three
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0100004	"A motif of 3 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -75 bounds -100 to -50, res i+1: psi 140 bounds 110 to 170. An extra restriction of the length of the O to O distance would be useful, that it be less than 5 Angstrom. More precisely these two oxygens are the main chain carbonyl oxygen atoms of residues i-1 and i+1." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1905740	biosapiens	biosapiens,SOFA	sequence	3	SO	polypeptide_region	catmat_left_handed_three
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0100004	"A motif of 3 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -75 bounds -100 to -50, res i+1: psi 140 bounds 110 to 170. An extra restriction of the length of the O to O distance would be useful, that it be less than 5 Angstrom. More precisely these two oxygens are the main chain carbonyl oxygen atoms of residues i-1 and i+1." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2930165	biosapiens,SOFA	SOFA	sequence	4	SO	polypeptide	catmat_left_handed_three
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100004	"A motif of 3 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -75 bounds -100 to -50, res i+1: psi 140 bounds 110 to 170. An extra restriction of the length of the O to O distance would be useful, that it be less than 5 Angstrom. More precisely these two oxygens are the main chain carbonyl oxygen atoms of residues i-1 and i+1." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2930166	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	catmat_left_handed_three
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100004	"A motif of 3 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -75 bounds -100 to -50, res i+1: psi 140 bounds 110 to 170. An extra restriction of the length of the O to O distance would be useful, that it be less than 5 Angstrom. More precisely these two oxygens are the main chain carbonyl oxygen atoms of residues i-1 and i+1." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4003161	SOFA	SOFA	sequence	5	SO	biological_region	catmat_left_handed_three
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0100004	"A motif of 3 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -75 bounds -100 to -50, res i+1: psi 140 bounds 110 to 170. An extra restriction of the length of the O to O distance would be useful, that it be less than 5 Angstrom. More precisely these two oxygens are the main chain carbonyl oxygen atoms of residues i-1 and i+1." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4967282	SOFA	SOFA	sequence	6	SO	region	catmat_left_handed_three
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0100004	"A motif of 3 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -75 bounds -100 to -50, res i+1: psi 140 bounds 110 to 170. An extra restriction of the length of the O to O distance would be useful, that it be less than 5 Angstrom. More precisely these two oxygens are the main chain carbonyl oxygen atoms of residues i-1 and i+1." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5407513	SOFA	SOFA	sequence	7	SO	sequence_feature	catmat_left_handed_three
SO:0100005	\N	biosapiens	"A motif of 4 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i psi -10 bounds -50 to 30, res i+1: phi -90 bounds -120 to -60, res i+1: psi -10 bounds -50 to 30, res i+2: phi -75 bounds -100 to -50, res i+2: psi 140 bounds 110 to 170.  The extra restriction of the length of the O to O distance is similar, that it be less than 5 Angstrom. In this case these two Oxygen atoms are the main chain carbonyl oxygen atoms of residues i-1 and i+2." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0100005	"A motif of 4 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i psi -10 bounds -50 to 30, res i+1: phi -90 bounds -120 to -60, res i+1: psi -10 bounds -50 to 30, res i+2: phi -75 bounds -100 to -50, res i+2: psi 140 bounds 110 to 170.  The extra restriction of the length of the O to O distance is similar, that it be less than 5 Angstrom. In this case these two Oxygen atoms are the main chain carbonyl oxygen atoms of residues i-1 and i+2." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	47069	\N	biosapiens	sequence	0	SO	catmat_left_handed_four	catmat_left_handed_four
SO:0001078	SO:0100005	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0100005	"A motif of 4 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i psi -10 bounds -50 to 30, res i+1: phi -90 bounds -120 to -60, res i+1: psi -10 bounds -50 to 30, res i+2: phi -75 bounds -100 to -50, res i+2: psi 140 bounds 110 to 170.  The extra restriction of the length of the O to O distance is similar, that it be less than 5 Angstrom. In this case these two Oxygen atoms are the main chain carbonyl oxygen atoms of residues i-1 and i+2." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	491883	biosapiens	biosapiens	sequence	1	SO	polypeptide_secondary_structure	catmat_left_handed_four
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0100005	"A motif of 4 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i psi -10 bounds -50 to 30, res i+1: phi -90 bounds -120 to -60, res i+1: psi -10 bounds -50 to 30, res i+2: phi -75 bounds -100 to -50, res i+2: psi 140 bounds 110 to 170.  The extra restriction of the length of the O to O distance is similar, that it be less than 5 Angstrom. In this case these two Oxygen atoms are the main chain carbonyl oxygen atoms of residues i-1 and i+2." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1074569	biosapiens	biosapiens	sequence	2	SO	polypeptide_structural_region	catmat_left_handed_four
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0100005	"A motif of 4 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i psi -10 bounds -50 to 30, res i+1: phi -90 bounds -120 to -60, res i+1: psi -10 bounds -50 to 30, res i+2: phi -75 bounds -100 to -50, res i+2: psi 140 bounds 110 to 170.  The extra restriction of the length of the O to O distance is similar, that it be less than 5 Angstrom. In this case these two Oxygen atoms are the main chain carbonyl oxygen atoms of residues i-1 and i+2." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1905741	biosapiens	biosapiens,SOFA	sequence	3	SO	polypeptide_region	catmat_left_handed_four
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0100005	"A motif of 4 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i psi -10 bounds -50 to 30, res i+1: phi -90 bounds -120 to -60, res i+1: psi -10 bounds -50 to 30, res i+2: phi -75 bounds -100 to -50, res i+2: psi 140 bounds 110 to 170.  The extra restriction of the length of the O to O distance is similar, that it be less than 5 Angstrom. In this case these two Oxygen atoms are the main chain carbonyl oxygen atoms of residues i-1 and i+2." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2930167	biosapiens,SOFA	SOFA	sequence	4	SO	polypeptide	catmat_left_handed_four
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100005	"A motif of 4 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i psi -10 bounds -50 to 30, res i+1: phi -90 bounds -120 to -60, res i+1: psi -10 bounds -50 to 30, res i+2: phi -75 bounds -100 to -50, res i+2: psi 140 bounds 110 to 170.  The extra restriction of the length of the O to O distance is similar, that it be less than 5 Angstrom. In this case these two Oxygen atoms are the main chain carbonyl oxygen atoms of residues i-1 and i+2." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2930168	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	catmat_left_handed_four
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100005	"A motif of 4 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i psi -10 bounds -50 to 30, res i+1: phi -90 bounds -120 to -60, res i+1: psi -10 bounds -50 to 30, res i+2: phi -75 bounds -100 to -50, res i+2: psi 140 bounds 110 to 170.  The extra restriction of the length of the O to O distance is similar, that it be less than 5 Angstrom. In this case these two Oxygen atoms are the main chain carbonyl oxygen atoms of residues i-1 and i+2." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4003163	SOFA	SOFA	sequence	5	SO	biological_region	catmat_left_handed_four
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0100005	"A motif of 4 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i psi -10 bounds -50 to 30, res i+1: phi -90 bounds -120 to -60, res i+1: psi -10 bounds -50 to 30, res i+2: phi -75 bounds -100 to -50, res i+2: psi 140 bounds 110 to 170.  The extra restriction of the length of the O to O distance is similar, that it be less than 5 Angstrom. In this case these two Oxygen atoms are the main chain carbonyl oxygen atoms of residues i-1 and i+2." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4967284	SOFA	SOFA	sequence	6	SO	region	catmat_left_handed_four
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0100005	"A motif of 4 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i psi -10 bounds -50 to 30, res i+1: phi -90 bounds -120 to -60, res i+1: psi -10 bounds -50 to 30, res i+2: phi -75 bounds -100 to -50, res i+2: psi 140 bounds 110 to 170.  The extra restriction of the length of the O to O distance is similar, that it be less than 5 Angstrom. In this case these two Oxygen atoms are the main chain carbonyl oxygen atoms of residues i-1 and i+2." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5407514	SOFA	SOFA	sequence	7	SO	sequence_feature	catmat_left_handed_four
SO:0100006	\N	biosapiens	"A motif of 3 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -75 bounds -100 to -50, res i+1: psi 140 bounds 110 to 170. An extra restriction of the length of the O to O distance would be useful, that it be less than 5 Angstrom. More precisely these two oxygens are the main chain carbonyl oxygen atoms of residues i-1 and i+1." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0100006	"A motif of 3 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -75 bounds -100 to -50, res i+1: psi 140 bounds 110 to 170. An extra restriction of the length of the O to O distance would be useful, that it be less than 5 Angstrom. More precisely these two oxygens are the main chain carbonyl oxygen atoms of residues i-1 and i+1." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	47070	\N	biosapiens	sequence	0	SO	catmat_right_handed_three	catmat_right_handed_three
SO:0001078	SO:0100006	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0100006	"A motif of 3 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -75 bounds -100 to -50, res i+1: psi 140 bounds 110 to 170. An extra restriction of the length of the O to O distance would be useful, that it be less than 5 Angstrom. More precisely these two oxygens are the main chain carbonyl oxygen atoms of residues i-1 and i+1." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	491884	biosapiens	biosapiens	sequence	1	SO	polypeptide_secondary_structure	catmat_right_handed_three
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0100006	"A motif of 3 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -75 bounds -100 to -50, res i+1: psi 140 bounds 110 to 170. An extra restriction of the length of the O to O distance would be useful, that it be less than 5 Angstrom. More precisely these two oxygens are the main chain carbonyl oxygen atoms of residues i-1 and i+1." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1074570	biosapiens	biosapiens	sequence	2	SO	polypeptide_structural_region	catmat_right_handed_three
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0100006	"A motif of 3 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -75 bounds -100 to -50, res i+1: psi 140 bounds 110 to 170. An extra restriction of the length of the O to O distance would be useful, that it be less than 5 Angstrom. More precisely these two oxygens are the main chain carbonyl oxygen atoms of residues i-1 and i+1." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1905742	biosapiens	biosapiens,SOFA	sequence	3	SO	polypeptide_region	catmat_right_handed_three
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0100006	"A motif of 3 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -75 bounds -100 to -50, res i+1: psi 140 bounds 110 to 170. An extra restriction of the length of the O to O distance would be useful, that it be less than 5 Angstrom. More precisely these two oxygens are the main chain carbonyl oxygen atoms of residues i-1 and i+1." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2930169	biosapiens,SOFA	SOFA	sequence	4	SO	polypeptide	catmat_right_handed_three
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100006	"A motif of 3 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -75 bounds -100 to -50, res i+1: psi 140 bounds 110 to 170. An extra restriction of the length of the O to O distance would be useful, that it be less than 5 Angstrom. More precisely these two oxygens are the main chain carbonyl oxygen atoms of residues i-1 and i+1." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2930170	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	catmat_right_handed_three
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100006	"A motif of 3 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -75 bounds -100 to -50, res i+1: psi 140 bounds 110 to 170. An extra restriction of the length of the O to O distance would be useful, that it be less than 5 Angstrom. More precisely these two oxygens are the main chain carbonyl oxygen atoms of residues i-1 and i+1." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4003165	SOFA	SOFA	sequence	5	SO	biological_region	catmat_right_handed_three
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0100006	"A motif of 3 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -75 bounds -100 to -50, res i+1: psi 140 bounds 110 to 170. An extra restriction of the length of the O to O distance would be useful, that it be less than 5 Angstrom. More precisely these two oxygens are the main chain carbonyl oxygen atoms of residues i-1 and i+1." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4967286	SOFA	SOFA	sequence	6	SO	region	catmat_right_handed_three
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0100006	"A motif of 3 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -75 bounds -100 to -50, res i+1: psi 140 bounds 110 to 170. An extra restriction of the length of the O to O distance would be useful, that it be less than 5 Angstrom. More precisely these two oxygens are the main chain carbonyl oxygen atoms of residues i-1 and i+1." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5407515	SOFA	SOFA	sequence	7	SO	sequence_feature	catmat_right_handed_three
SO:0100007	\N	biosapiens	"A motif of 4 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -90 bounds -120 to -60, res i+1: psi -10 bounds -50 to 30, res i+2: phi -75 bounds -100 to -50, res i+2: psi 140 bounds 110 to 170. The extra restriction of the length of the O to O distance is similar, that it be less than 5 Angstrom. In this case these two Oxygen atoms are the main chain carbonyl oxygen atoms of residues i-1 and i+2." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0100007	"A motif of 4 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -90 bounds -120 to -60, res i+1: psi -10 bounds -50 to 30, res i+2: phi -75 bounds -100 to -50, res i+2: psi 140 bounds 110 to 170. The extra restriction of the length of the O to O distance is similar, that it be less than 5 Angstrom. In this case these two Oxygen atoms are the main chain carbonyl oxygen atoms of residues i-1 and i+2." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	47071	\N	biosapiens	sequence	0	SO	catmat_right_handed_four	catmat_right_handed_four
SO:0001078	SO:0100007	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0100007	"A motif of 4 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -90 bounds -120 to -60, res i+1: psi -10 bounds -50 to 30, res i+2: phi -75 bounds -100 to -50, res i+2: psi 140 bounds 110 to 170. The extra restriction of the length of the O to O distance is similar, that it be less than 5 Angstrom. In this case these two Oxygen atoms are the main chain carbonyl oxygen atoms of residues i-1 and i+2." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	491885	biosapiens	biosapiens	sequence	1	SO	polypeptide_secondary_structure	catmat_right_handed_four
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0100007	"A motif of 4 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -90 bounds -120 to -60, res i+1: psi -10 bounds -50 to 30, res i+2: phi -75 bounds -100 to -50, res i+2: psi 140 bounds 110 to 170. The extra restriction of the length of the O to O distance is similar, that it be less than 5 Angstrom. In this case these two Oxygen atoms are the main chain carbonyl oxygen atoms of residues i-1 and i+2." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1074571	biosapiens	biosapiens	sequence	2	SO	polypeptide_structural_region	catmat_right_handed_four
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0100007	"A motif of 4 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -90 bounds -120 to -60, res i+1: psi -10 bounds -50 to 30, res i+2: phi -75 bounds -100 to -50, res i+2: psi 140 bounds 110 to 170. The extra restriction of the length of the O to O distance is similar, that it be less than 5 Angstrom. In this case these two Oxygen atoms are the main chain carbonyl oxygen atoms of residues i-1 and i+2." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1905743	biosapiens	biosapiens,SOFA	sequence	3	SO	polypeptide_region	catmat_right_handed_four
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0100007	"A motif of 4 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -90 bounds -120 to -60, res i+1: psi -10 bounds -50 to 30, res i+2: phi -75 bounds -100 to -50, res i+2: psi 140 bounds 110 to 170. The extra restriction of the length of the O to O distance is similar, that it be less than 5 Angstrom. In this case these two Oxygen atoms are the main chain carbonyl oxygen atoms of residues i-1 and i+2." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2930171	biosapiens,SOFA	SOFA	sequence	4	SO	polypeptide	catmat_right_handed_four
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100007	"A motif of 4 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -90 bounds -120 to -60, res i+1: psi -10 bounds -50 to 30, res i+2: phi -75 bounds -100 to -50, res i+2: psi 140 bounds 110 to 170. The extra restriction of the length of the O to O distance is similar, that it be less than 5 Angstrom. In this case these two Oxygen atoms are the main chain carbonyl oxygen atoms of residues i-1 and i+2." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2930172	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	catmat_right_handed_four
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100007	"A motif of 4 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -90 bounds -120 to -60, res i+1: psi -10 bounds -50 to 30, res i+2: phi -75 bounds -100 to -50, res i+2: psi 140 bounds 110 to 170. The extra restriction of the length of the O to O distance is similar, that it be less than 5 Angstrom. In this case these two Oxygen atoms are the main chain carbonyl oxygen atoms of residues i-1 and i+2." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4003167	SOFA	SOFA	sequence	5	SO	biological_region	catmat_right_handed_four
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0100007	"A motif of 4 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -90 bounds -120 to -60, res i+1: psi -10 bounds -50 to 30, res i+2: phi -75 bounds -100 to -50, res i+2: psi 140 bounds 110 to 170. The extra restriction of the length of the O to O distance is similar, that it be less than 5 Angstrom. In this case these two Oxygen atoms are the main chain carbonyl oxygen atoms of residues i-1 and i+2." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4967288	SOFA	SOFA	sequence	6	SO	region	catmat_right_handed_four
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0100007	"A motif of 4 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -90 bounds -120 to -60, res i+1: psi -10 bounds -50 to 30, res i+2: phi -75 bounds -100 to -50, res i+2: psi 140 bounds 110 to 170. The extra restriction of the length of the O to O distance is similar, that it be less than 5 Angstrom. In this case these two Oxygen atoms are the main chain carbonyl oxygen atoms of residues i-1 and i+2." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5407516	SOFA	SOFA	sequence	7	SO	sequence_feature	catmat_right_handed_four
SO:0100008	\N	biosapiens	"A motif of five consecutive residues and two H-bonds in which: H-bond between CO of residue(i) and NH of residue(i+4), H-bond between CO of residue(i) and NH of residue(i+3),Phi angles of residues(i+1), (i+2) and (i+3) are negative." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	SO:0100008	"A motif of five consecutive residues and two H-bonds in which: H-bond between CO of residue(i) and NH of residue(i+4), H-bond between CO of residue(i) and NH of residue(i+3),Phi angles of residues(i+1), (i+2) and (i+3) are negative." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	47072	\N	biosapiens	sequence	0	SO	alpha_beta_motif	alpha_beta_motif
SO:0001078	SO:0100008	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0100008	"A motif of five consecutive residues and two H-bonds in which: H-bond between CO of residue(i) and NH of residue(i+4), H-bond between CO of residue(i) and NH of residue(i+3),Phi angles of residues(i+1), (i+2) and (i+3) are negative." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	491886	biosapiens	biosapiens	sequence	1	SO	polypeptide_secondary_structure	alpha_beta_motif
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0100008	"A motif of five consecutive residues and two H-bonds in which: H-bond between CO of residue(i) and NH of residue(i+4), H-bond between CO of residue(i) and NH of residue(i+3),Phi angles of residues(i+1), (i+2) and (i+3) are negative." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1074572	biosapiens	biosapiens	sequence	2	SO	polypeptide_structural_region	alpha_beta_motif
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0100008	"A motif of five consecutive residues and two H-bonds in which: H-bond between CO of residue(i) and NH of residue(i+4), H-bond between CO of residue(i) and NH of residue(i+3),Phi angles of residues(i+1), (i+2) and (i+3) are negative." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	1905744	biosapiens	biosapiens,SOFA	sequence	3	SO	polypeptide_region	alpha_beta_motif
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0100008	"A motif of five consecutive residues and two H-bonds in which: H-bond between CO of residue(i) and NH of residue(i+4), H-bond between CO of residue(i) and NH of residue(i+3),Phi angles of residues(i+1), (i+2) and (i+3) are negative." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2930173	biosapiens,SOFA	SOFA	sequence	4	SO	polypeptide	alpha_beta_motif
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100008	"A motif of five consecutive residues and two H-bonds in which: H-bond between CO of residue(i) and NH of residue(i+4), H-bond between CO of residue(i) and NH of residue(i+3),Phi angles of residues(i+1), (i+2) and (i+3) are negative." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	2930174	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	alpha_beta_motif
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100008	"A motif of five consecutive residues and two H-bonds in which: H-bond between CO of residue(i) and NH of residue(i+4), H-bond between CO of residue(i) and NH of residue(i+3),Phi angles of residues(i+1), (i+2) and (i+3) are negative." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4003169	SOFA	SOFA	sequence	5	SO	biological_region	alpha_beta_motif
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0100008	"A motif of five consecutive residues and two H-bonds in which: H-bond between CO of residue(i) and NH of residue(i+4), H-bond between CO of residue(i) and NH of residue(i+3),Phi angles of residues(i+1), (i+2) and (i+3) are negative." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	4967290	SOFA	SOFA	sequence	6	SO	region	alpha_beta_motif
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0100008	"A motif of five consecutive residues and two H-bonds in which: H-bond between CO of residue(i) and NH of residue(i+4), H-bond between CO of residue(i) and NH of residue(i+3),Phi angles of residues(i+1), (i+2) and (i+3) are negative." [EBIBS:GAR, http://www.ebi.ac.uk/msd-srv/msdmotif/]	5407517	SOFA	SOFA	sequence	7	SO	sequence_feature	alpha_beta_motif
SO:0100009	\N	biosapiens	"A peptide that acts as a signal for both membrane translocation and lipid attachment in prokaryotes." [EBIBS:GAR]	SO:0100009	"A peptide that acts as a signal for both membrane translocation and lipid attachment in prokaryotes." [EBIBS:GAR]	47073	\N	biosapiens	sequence	0	SO	lipoprotein_signal_peptide	lipoprotein_signal_peptide
SO:0100011	SO:0100009	biosapiens	"The cleaved_peptide_region is the region of a peptide sequence that is cleaved during maturation." [EBIBS:GAR]	SO:0100009	"A peptide that acts as a signal for both membrane translocation and lipid attachment in prokaryotes." [EBIBS:GAR]	491887	biosapiens	biosapiens,SOFA	sequence	1	SO	cleaved_peptide_region	lipoprotein_signal_peptide
SO:0000839	SO:0100011	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0100009	"A peptide that acts as a signal for both membrane translocation and lipid attachment in prokaryotes." [EBIBS:GAR]	1074573	biosapiens,SOFA	biosapiens,SOFA	sequence	2	SO	polypeptide_region	lipoprotein_signal_peptide
SO:0001063	SO:0100011	biosapiens	"An immature_peptide_region is the extent of the peptide after it has been translated and before any processing occurs." [EBIBS:GAR]	SO:0100009	"A peptide that acts as a signal for both membrane translocation and lipid attachment in prokaryotes." [EBIBS:GAR]	1074574	biosapiens,SOFA	biosapiens,SOFA	sequence	2	SO	immature_peptide_region	lipoprotein_signal_peptide
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0100009	"A peptide that acts as a signal for both membrane translocation and lipid attachment in prokaryotes." [EBIBS:GAR]	2930177	biosapiens,SOFA	SOFA	sequence	4	SO	polypeptide	lipoprotein_signal_peptide
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100009	"A peptide that acts as a signal for both membrane translocation and lipid attachment in prokaryotes." [EBIBS:GAR]	2930178	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	lipoprotein_signal_peptide
SO:0000839	SO:0001063	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0100009	"A peptide that acts as a signal for both membrane translocation and lipid attachment in prokaryotes." [EBIBS:GAR]	1905747	biosapiens,SOFA	biosapiens,SOFA	sequence	3	SO	polypeptide_region	lipoprotein_signal_peptide
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100009	"A peptide that acts as a signal for both membrane translocation and lipid attachment in prokaryotes." [EBIBS:GAR]	3174034	SOFA	SOFA	sequence	5	SO	biological_region	lipoprotein_signal_peptide
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0100009	"A peptide that acts as a signal for both membrane translocation and lipid attachment in prokaryotes." [EBIBS:GAR]	4385896	SOFA	SOFA	sequence	6	SO	region	lipoprotein_signal_peptide
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0100009	"A peptide that acts as a signal for both membrane translocation and lipid attachment in prokaryotes." [EBIBS:GAR]	5180775	SOFA	SOFA	sequence	7	SO	sequence_feature	lipoprotein_signal_peptide
SO:0100010	\N	biosapiens	"An experimental region wherean analysis has been run and not produced any annotation." [EBIBS:GAR]	SO:0100010	"An experimental region wherean analysis has been run and not produced any annotation." [EBIBS:GAR]	47074	\N	biosapiens	sequence	0	SO	no_output	no_output
SO:0000703	SO:0100010	biosapiens	"A region of sequence implicated in an experimental result." [SO:ke]	SO:0100010	"An experimental region wherean analysis has been run and not produced any annotation." [EBIBS:GAR]	491888	biosapiens	SOFA	sequence	1	SO	experimental_result_region	no_output
SO:0000700	SO:0000703	biosapiens	"A comment about the sequence." [SO:ke]	SO:0100010	"An experimental region wherean analysis has been run and not produced any annotation." [EBIBS:GAR]	1074575	SOFA	SOFA	sequence	2	SO	remark	no_output
SO:0001410	SO:0000700	biosapiens	"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer." [SO:cb]	SO:0100010	"An experimental region wherean analysis has been run and not produced any annotation." [EBIBS:GAR]	1905748	SOFA	SOFA	sequence	3	SO	experimental_feature	no_output
SO:0000001	SO:0001410	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0100010	"An experimental region wherean analysis has been run and not produced any annotation." [EBIBS:GAR]	2930179	SOFA	SOFA	sequence	4	SO	region	no_output
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0100010	"An experimental region wherean analysis has been run and not produced any annotation." [EBIBS:GAR]	4003172	SOFA	SOFA	sequence	5	SO	sequence_feature	no_output
SO:0100011	\N	biosapiens,SOFA	"The cleaved_peptide_region is the region of a peptide sequence that is cleaved during maturation." [EBIBS:GAR]	SO:0100011	"The cleaved_peptide_region is the region of a peptide sequence that is cleaved during maturation." [EBIBS:GAR]	47075	\N	biosapiens,SOFA	sequence	0	SO	cleaved_peptide_region	cleaved_peptide_region
SO:0000839	SO:0100011	biosapiens,SOFA	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0100011	"The cleaved_peptide_region is the region of a peptide sequence that is cleaved during maturation." [EBIBS:GAR]	491889	biosapiens,SOFA	biosapiens,SOFA	sequence	1	SO	polypeptide_region	cleaved_peptide_region
SO:0001063	SO:0100011	biosapiens,SOFA	"An immature_peptide_region is the extent of the peptide after it has been translated and before any processing occurs." [EBIBS:GAR]	SO:0100011	"The cleaved_peptide_region is the region of a peptide sequence that is cleaved during maturation." [EBIBS:GAR]	491890	biosapiens,SOFA	biosapiens,SOFA	sequence	1	SO	immature_peptide_region	cleaved_peptide_region
SO:0000104	SO:0000839	biosapiens,SOFA	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0100011	"The cleaved_peptide_region is the region of a peptide sequence that is cleaved during maturation." [EBIBS:GAR]	1905751	biosapiens,SOFA	SOFA	sequence	3	SO	polypeptide	cleaved_peptide_region
SO:0001411	SO:0000839	biosapiens,SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100011	"The cleaved_peptide_region is the region of a peptide sequence that is cleaved during maturation." [EBIBS:GAR]	1905752	biosapiens,SOFA	SOFA	sequence	3	SO	biological_region	cleaved_peptide_region
SO:0000839	SO:0001063	biosapiens,SOFA	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0100011	"The cleaved_peptide_region is the region of a peptide sequence that is cleaved during maturation." [EBIBS:GAR]	1074578	biosapiens,SOFA	biosapiens,SOFA	sequence	2	SO	polypeptide_region	cleaved_peptide_region
SO:0001411	SO:0000104	biosapiens,SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100011	"The cleaved_peptide_region is the region of a peptide sequence that is cleaved during maturation." [EBIBS:GAR]	2018252	SOFA	SOFA	sequence	4	SO	biological_region	cleaved_peptide_region
SO:0000001	SO:0001411	biosapiens,SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0100011	"The cleaved_peptide_region is the region of a peptide sequence that is cleaved during maturation." [EBIBS:GAR]	3174036	SOFA	SOFA	sequence	5	SO	region	cleaved_peptide_region
SO:0000110	SO:0000001	biosapiens,SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0100011	"The cleaved_peptide_region is the region of a peptide sequence that is cleaved during maturation." [EBIBS:GAR]	4132348	SOFA	SOFA	sequence	6	SO	sequence_feature	cleaved_peptide_region
SO:0100012	\N	biosapiens	"Irregular, unstructured regions of a protein's backbone, as distinct from the regular region (namely alpha helix and beta strand - characterised by specific patterns of main-chain hydrogen bonds)." [EBIBS:GAR]	SO:0100012	"Irregular, unstructured regions of a protein's backbone, as distinct from the regular region (namely alpha helix and beta strand - characterised by specific patterns of main-chain hydrogen bonds)." [EBIBS:GAR]	47076	\N	biosapiens	sequence	0	SO	peptide_coil	peptide_coil
SO:0001078	SO:0100012	biosapiens	"A region of peptide with secondary structure has hydrogen bonding along the peptide chain that causes a defined conformation of the chain." [EBIBS:GAR]	SO:0100012	"Irregular, unstructured regions of a protein's backbone, as distinct from the regular region (namely alpha helix and beta strand - characterised by specific patterns of main-chain hydrogen bonds)." [EBIBS:GAR]	491891	biosapiens	biosapiens	sequence	1	SO	polypeptide_secondary_structure	peptide_coil
SO:0001070	SO:0001078	biosapiens	"Region of polypeptide with a given structural property." [EBIBS:GAR, SO:cb]	SO:0100012	"Irregular, unstructured regions of a protein's backbone, as distinct from the regular region (namely alpha helix and beta strand - characterised by specific patterns of main-chain hydrogen bonds)." [EBIBS:GAR]	1074579	biosapiens	biosapiens	sequence	2	SO	polypeptide_structural_region	peptide_coil
SO:0000839	SO:0001070	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0100012	"Irregular, unstructured regions of a protein's backbone, as distinct from the regular region (namely alpha helix and beta strand - characterised by specific patterns of main-chain hydrogen bonds)." [EBIBS:GAR]	1905753	biosapiens	biosapiens,SOFA	sequence	3	SO	polypeptide_region	peptide_coil
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0100012	"Irregular, unstructured regions of a protein's backbone, as distinct from the regular region (namely alpha helix and beta strand - characterised by specific patterns of main-chain hydrogen bonds)." [EBIBS:GAR]	2930181	biosapiens,SOFA	SOFA	sequence	4	SO	polypeptide	peptide_coil
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100012	"Irregular, unstructured regions of a protein's backbone, as distinct from the regular region (namely alpha helix and beta strand - characterised by specific patterns of main-chain hydrogen bonds)." [EBIBS:GAR]	2930182	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	peptide_coil
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100012	"Irregular, unstructured regions of a protein's backbone, as distinct from the regular region (namely alpha helix and beta strand - characterised by specific patterns of main-chain hydrogen bonds)." [EBIBS:GAR]	4003173	SOFA	SOFA	sequence	5	SO	biological_region	peptide_coil
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0100012	"Irregular, unstructured regions of a protein's backbone, as distinct from the regular region (namely alpha helix and beta strand - characterised by specific patterns of main-chain hydrogen bonds)." [EBIBS:GAR]	4967292	SOFA	SOFA	sequence	6	SO	region	peptide_coil
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0100012	"Irregular, unstructured regions of a protein's backbone, as distinct from the regular region (namely alpha helix and beta strand - characterised by specific patterns of main-chain hydrogen bonds)." [EBIBS:GAR]	5407518	SOFA	SOFA	sequence	7	SO	sequence_feature	peptide_coil
SO:0100013	\N	biosapiens	"Hydrophobic regions are regions with a low affinity for water." [EBIBS:GAR]	SO:0100013	"Hydrophobic regions are regions with a low affinity for water." [EBIBS:GAR]	47077	\N	biosapiens	sequence	0	SO	hydrophobic_region_of_peptide	hydrophobic_region_of_peptide
SO:0000839	SO:0100013	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0100013	"Hydrophobic regions are regions with a low affinity for water." [EBIBS:GAR]	491892	biosapiens	biosapiens,SOFA	sequence	1	SO	polypeptide_region	hydrophobic_region_of_peptide
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0100013	"Hydrophobic regions are regions with a low affinity for water." [EBIBS:GAR]	1074580	biosapiens,SOFA	SOFA	sequence	2	SO	polypeptide	hydrophobic_region_of_peptide
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100013	"Hydrophobic regions are regions with a low affinity for water." [EBIBS:GAR]	1074581	biosapiens,SOFA	SOFA	sequence	2	SO	biological_region	hydrophobic_region_of_peptide
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100013	"Hydrophobic regions are regions with a low affinity for water." [EBIBS:GAR]	1905754	SOFA	SOFA	sequence	3	SO	biological_region	hydrophobic_region_of_peptide
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0100013	"Hydrophobic regions are regions with a low affinity for water." [EBIBS:GAR]	2930183	SOFA	SOFA	sequence	4	SO	region	hydrophobic_region_of_peptide
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0100013	"Hydrophobic regions are regions with a low affinity for water." [EBIBS:GAR]	3174038	SOFA	SOFA	sequence	5	SO	sequence_feature	hydrophobic_region_of_peptide
SO:0100014	\N	biosapiens	"The amino-terminal positively-charged region of a signal peptide (approx 1-5 aa)." [EBIBS:GAR]	SO:0100014	"The amino-terminal positively-charged region of a signal peptide (approx 1-5 aa)." [EBIBS:GAR]	47078	\N	biosapiens	sequence	0	SO	n_terminal_region	n_terminal_region
SO:0000418	SO:0100014	biosapiens	"The signal_peptide is a short region of the peptide located at the N-terminus that directs the protein to be secreted or part of membrane components." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0100014	"The amino-terminal positively-charged region of a signal peptide (approx 1-5 aa)." [EBIBS:GAR]	491893	biosapiens	biosapiens,SOFA	sequence	1	SO	signal_peptide	n_terminal_region
SO:0100011	SO:0100014	biosapiens	"The cleaved_peptide_region is the region of a peptide sequence that is cleaved during maturation." [EBIBS:GAR]	SO:0100014	"The amino-terminal positively-charged region of a signal peptide (approx 1-5 aa)." [EBIBS:GAR]	491894	biosapiens	biosapiens,SOFA	sequence	1	SO	cleaved_peptide_region	n_terminal_region
SO:0001062	SO:0000418	biosapiens	"Part of a peptide chain which is cleaved off during the formation of the mature protein." [EBIBS:GAR]	SO:0100014	"The amino-terminal positively-charged region of a signal peptide (approx 1-5 aa)." [EBIBS:GAR]	1074582	biosapiens,SOFA	biosapiens	sequence	2	SO	propeptide	n_terminal_region
SO:0001527	SO:0000418	biosapiens	"A region of peptide sequence used to target the polypeptide molecule to a specific organelle." [SO:ke]	SO:0100014	"The amino-terminal positively-charged region of a signal peptide (approx 1-5 aa)." [EBIBS:GAR]	1074583	biosapiens,SOFA	SOFA	sequence	2	SO	peptide_localization_signal	n_terminal_region
SO:0000839	SO:0100011	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0100014	"The amino-terminal positively-charged region of a signal peptide (approx 1-5 aa)." [EBIBS:GAR]	2930185	biosapiens,SOFA	biosapiens,SOFA	sequence	4	SO	polypeptide_region	n_terminal_region
SO:0001063	SO:0100011	biosapiens	"An immature_peptide_region is the extent of the peptide after it has been translated and before any processing occurs." [EBIBS:GAR]	SO:0100014	"The amino-terminal positively-charged region of a signal peptide (approx 1-5 aa)." [EBIBS:GAR]	2930186	biosapiens,SOFA	biosapiens,SOFA	sequence	4	SO	immature_peptide_region	n_terminal_region
SO:0100011	SO:0001062	biosapiens	"The cleaved_peptide_region is the region of a peptide sequence that is cleaved during maturation." [EBIBS:GAR]	SO:0100014	"The amino-terminal positively-charged region of a signal peptide (approx 1-5 aa)." [EBIBS:GAR]	1905756	biosapiens	biosapiens,SOFA	sequence	3	SO	cleaved_peptide_region	n_terminal_region
SO:0000839	SO:0001527	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0100014	"The amino-terminal positively-charged region of a signal peptide (approx 1-5 aa)." [EBIBS:GAR]	1905757	SOFA	biosapiens,SOFA	sequence	3	SO	polypeptide_region	n_terminal_region
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0100014	"The amino-terminal positively-charged region of a signal peptide (approx 1-5 aa)." [EBIBS:GAR]	4132351	biosapiens,SOFA	SOFA	sequence	6	SO	polypeptide	n_terminal_region
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100014	"The amino-terminal positively-charged region of a signal peptide (approx 1-5 aa)." [EBIBS:GAR]	4132352	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	n_terminal_region
SO:0000839	SO:0001063	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0100014	"The amino-terminal positively-charged region of a signal peptide (approx 1-5 aa)." [EBIBS:GAR]	2999129	biosapiens,SOFA	biosapiens,SOFA	sequence	5	SO	polypeptide_region	n_terminal_region
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100014	"The amino-terminal positively-charged region of a signal peptide (approx 1-5 aa)." [EBIBS:GAR]	5059253	SOFA	SOFA	sequence	7	SO	biological_region	n_terminal_region
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0100014	"The amino-terminal positively-charged region of a signal peptide (approx 1-5 aa)." [EBIBS:GAR]	5876473	SOFA	SOFA	sequence	8	SO	region	n_terminal_region
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0100014	"The amino-terminal positively-charged region of a signal peptide (approx 1-5 aa)." [EBIBS:GAR]	6409727	SOFA	SOFA	sequence	9	SO	sequence_feature	n_terminal_region
SO:0100015	\N	biosapiens	"The more polar, carboxy-terminal region of the signal peptide (approx 3-7 aa)." [EBIBS:GAR]	SO:0100015	"The more polar, carboxy-terminal region of the signal peptide (approx 3-7 aa)." [EBIBS:GAR]	47079	\N	biosapiens	sequence	0	SO	c_terminal_region	c_terminal_region
SO:0000418	SO:0100015	biosapiens	"The signal_peptide is a short region of the peptide located at the N-terminus that directs the protein to be secreted or part of membrane components." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0100015	"The more polar, carboxy-terminal region of the signal peptide (approx 3-7 aa)." [EBIBS:GAR]	491895	biosapiens	biosapiens,SOFA	sequence	1	SO	signal_peptide	c_terminal_region
SO:0100011	SO:0100015	biosapiens	"The cleaved_peptide_region is the region of a peptide sequence that is cleaved during maturation." [EBIBS:GAR]	SO:0100015	"The more polar, carboxy-terminal region of the signal peptide (approx 3-7 aa)." [EBIBS:GAR]	491896	biosapiens	biosapiens,SOFA	sequence	1	SO	cleaved_peptide_region	c_terminal_region
SO:0001062	SO:0000418	biosapiens	"Part of a peptide chain which is cleaved off during the formation of the mature protein." [EBIBS:GAR]	SO:0100015	"The more polar, carboxy-terminal region of the signal peptide (approx 3-7 aa)." [EBIBS:GAR]	1074586	biosapiens,SOFA	biosapiens	sequence	2	SO	propeptide	c_terminal_region
SO:0001527	SO:0000418	biosapiens	"A region of peptide sequence used to target the polypeptide molecule to a specific organelle." [SO:ke]	SO:0100015	"The more polar, carboxy-terminal region of the signal peptide (approx 3-7 aa)." [EBIBS:GAR]	1074587	biosapiens,SOFA	SOFA	sequence	2	SO	peptide_localization_signal	c_terminal_region
SO:0000839	SO:0100011	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0100015	"The more polar, carboxy-terminal region of the signal peptide (approx 3-7 aa)." [EBIBS:GAR]	2930191	biosapiens,SOFA	biosapiens,SOFA	sequence	4	SO	polypeptide_region	c_terminal_region
SO:0001063	SO:0100011	biosapiens	"An immature_peptide_region is the extent of the peptide after it has been translated and before any processing occurs." [EBIBS:GAR]	SO:0100015	"The more polar, carboxy-terminal region of the signal peptide (approx 3-7 aa)." [EBIBS:GAR]	2930192	biosapiens,SOFA	biosapiens,SOFA	sequence	4	SO	immature_peptide_region	c_terminal_region
SO:0100011	SO:0001062	biosapiens	"The cleaved_peptide_region is the region of a peptide sequence that is cleaved during maturation." [EBIBS:GAR]	SO:0100015	"The more polar, carboxy-terminal region of the signal peptide (approx 3-7 aa)." [EBIBS:GAR]	1905761	biosapiens	biosapiens,SOFA	sequence	3	SO	cleaved_peptide_region	c_terminal_region
SO:0000839	SO:0001527	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0100015	"The more polar, carboxy-terminal region of the signal peptide (approx 3-7 aa)." [EBIBS:GAR]	1905762	SOFA	biosapiens,SOFA	sequence	3	SO	polypeptide_region	c_terminal_region
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0100015	"The more polar, carboxy-terminal region of the signal peptide (approx 3-7 aa)." [EBIBS:GAR]	4132355	biosapiens,SOFA	SOFA	sequence	6	SO	polypeptide	c_terminal_region
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100015	"The more polar, carboxy-terminal region of the signal peptide (approx 3-7 aa)." [EBIBS:GAR]	4132356	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	c_terminal_region
SO:0000839	SO:0001063	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0100015	"The more polar, carboxy-terminal region of the signal peptide (approx 3-7 aa)." [EBIBS:GAR]	2999132	biosapiens,SOFA	biosapiens,SOFA	sequence	5	SO	polypeptide_region	c_terminal_region
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100015	"The more polar, carboxy-terminal region of the signal peptide (approx 3-7 aa)." [EBIBS:GAR]	5059255	SOFA	SOFA	sequence	7	SO	biological_region	c_terminal_region
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0100015	"The more polar, carboxy-terminal region of the signal peptide (approx 3-7 aa)." [EBIBS:GAR]	5876475	SOFA	SOFA	sequence	8	SO	region	c_terminal_region
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0100015	"The more polar, carboxy-terminal region of the signal peptide (approx 3-7 aa)." [EBIBS:GAR]	6409728	SOFA	SOFA	sequence	9	SO	sequence_feature	c_terminal_region
SO:0100016	\N	biosapiens	"The central, hydrophobic region of the signal peptide (approx 7-15 aa)." [EBIBS:GAR]	SO:0100016	"The central, hydrophobic region of the signal peptide (approx 7-15 aa)." [EBIBS:GAR]	47080	\N	biosapiens	sequence	0	SO	central_hydrophobic_region_of_signal_peptide	central_hydrophobic_region_of_signal_peptide
SO:0000418	SO:0100016	biosapiens	"The signal_peptide is a short region of the peptide located at the N-terminus that directs the protein to be secreted or part of membrane components." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:0100016	"The central, hydrophobic region of the signal peptide (approx 7-15 aa)." [EBIBS:GAR]	491897	biosapiens	biosapiens,SOFA	sequence	1	SO	signal_peptide	central_hydrophobic_region_of_signal_peptide
SO:0100011	SO:0100016	biosapiens	"The cleaved_peptide_region is the region of a peptide sequence that is cleaved during maturation." [EBIBS:GAR]	SO:0100016	"The central, hydrophobic region of the signal peptide (approx 7-15 aa)." [EBIBS:GAR]	491898	biosapiens	biosapiens,SOFA	sequence	1	SO	cleaved_peptide_region	central_hydrophobic_region_of_signal_peptide
SO:0001062	SO:0000418	biosapiens	"Part of a peptide chain which is cleaved off during the formation of the mature protein." [EBIBS:GAR]	SO:0100016	"The central, hydrophobic region of the signal peptide (approx 7-15 aa)." [EBIBS:GAR]	1074590	biosapiens,SOFA	biosapiens	sequence	2	SO	propeptide	central_hydrophobic_region_of_signal_peptide
SO:0001527	SO:0000418	biosapiens	"A region of peptide sequence used to target the polypeptide molecule to a specific organelle." [SO:ke]	SO:0100016	"The central, hydrophobic region of the signal peptide (approx 7-15 aa)." [EBIBS:GAR]	1074591	biosapiens,SOFA	SOFA	sequence	2	SO	peptide_localization_signal	central_hydrophobic_region_of_signal_peptide
SO:0000839	SO:0100011	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0100016	"The central, hydrophobic region of the signal peptide (approx 7-15 aa)." [EBIBS:GAR]	2930197	biosapiens,SOFA	biosapiens,SOFA	sequence	4	SO	polypeptide_region	central_hydrophobic_region_of_signal_peptide
SO:0001063	SO:0100011	biosapiens	"An immature_peptide_region is the extent of the peptide after it has been translated and before any processing occurs." [EBIBS:GAR]	SO:0100016	"The central, hydrophobic region of the signal peptide (approx 7-15 aa)." [EBIBS:GAR]	2930198	biosapiens,SOFA	biosapiens,SOFA	sequence	4	SO	immature_peptide_region	central_hydrophobic_region_of_signal_peptide
SO:0100011	SO:0001062	biosapiens	"The cleaved_peptide_region is the region of a peptide sequence that is cleaved during maturation." [EBIBS:GAR]	SO:0100016	"The central, hydrophobic region of the signal peptide (approx 7-15 aa)." [EBIBS:GAR]	1905766	biosapiens	biosapiens,SOFA	sequence	3	SO	cleaved_peptide_region	central_hydrophobic_region_of_signal_peptide
SO:0000839	SO:0001527	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0100016	"The central, hydrophobic region of the signal peptide (approx 7-15 aa)." [EBIBS:GAR]	1905767	SOFA	biosapiens,SOFA	sequence	3	SO	polypeptide_region	central_hydrophobic_region_of_signal_peptide
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0100016	"The central, hydrophobic region of the signal peptide (approx 7-15 aa)." [EBIBS:GAR]	4132359	biosapiens,SOFA	SOFA	sequence	6	SO	polypeptide	central_hydrophobic_region_of_signal_peptide
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100016	"The central, hydrophobic region of the signal peptide (approx 7-15 aa)." [EBIBS:GAR]	4132360	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	central_hydrophobic_region_of_signal_peptide
SO:0000839	SO:0001063	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0100016	"The central, hydrophobic region of the signal peptide (approx 7-15 aa)." [EBIBS:GAR]	2999135	biosapiens,SOFA	biosapiens,SOFA	sequence	5	SO	polypeptide_region	central_hydrophobic_region_of_signal_peptide
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100016	"The central, hydrophobic region of the signal peptide (approx 7-15 aa)." [EBIBS:GAR]	5059257	SOFA	SOFA	sequence	7	SO	biological_region	central_hydrophobic_region_of_signal_peptide
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0100016	"The central, hydrophobic region of the signal peptide (approx 7-15 aa)." [EBIBS:GAR]	5876477	SOFA	SOFA	sequence	8	SO	region	central_hydrophobic_region_of_signal_peptide
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0100016	"The central, hydrophobic region of the signal peptide (approx 7-15 aa)." [EBIBS:GAR]	6409729	SOFA	SOFA	sequence	9	SO	sequence_feature	central_hydrophobic_region_of_signal_peptide
SO:0100017	\N	biosapiens	"A conserved motif is a short (up to 20 amino acids) region of biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0100017	"A conserved motif is a short (up to 20 amino acids) region of biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	47081	\N	biosapiens	sequence	0	SO	polypeptide_conserved_motif	polypeptide_conserved_motif
SO:0001067	SO:0100017	biosapiens	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0100017	"A conserved motif is a short (up to 20 amino acids) region of biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	491899	biosapiens	biosapiens	sequence	1	SO	polypeptide_motif	polypeptide_conserved_motif
SO:0100021	SO:0001067	biosapiens	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0100017	"A conserved motif is a short (up to 20 amino acids) region of biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	1074594	biosapiens	biosapiens	sequence	2	SO	polypeptide_conserved_region	polypeptide_conserved_motif
SO:0000839	SO:0100021	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0100017	"A conserved motif is a short (up to 20 amino acids) region of biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	1905771	biosapiens	biosapiens,SOFA	sequence	3	SO	polypeptide_region	polypeptide_conserved_motif
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0100017	"A conserved motif is a short (up to 20 amino acids) region of biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	2930203	biosapiens,SOFA	SOFA	sequence	4	SO	polypeptide	polypeptide_conserved_motif
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100017	"A conserved motif is a short (up to 20 amino acids) region of biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	2930204	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	polypeptide_conserved_motif
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100017	"A conserved motif is a short (up to 20 amino acids) region of biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	4003178	SOFA	SOFA	sequence	5	SO	biological_region	polypeptide_conserved_motif
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0100017	"A conserved motif is a short (up to 20 amino acids) region of biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	4967294	SOFA	SOFA	sequence	6	SO	region	polypeptide_conserved_motif
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0100017	"A conserved motif is a short (up to 20 amino acids) region of biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	5407519	SOFA	SOFA	sequence	7	SO	sequence_feature	polypeptide_conserved_motif
SO:0100018	\N	biosapiens	"A polypeptide binding motif is a short (up to 20 amino acids) polypeptide region of biological interest that contains one or more amino acids experimentally shown to bind to a ligand." [EBIBS:GAR]	SO:0100018	"A polypeptide binding motif is a short (up to 20 amino acids) polypeptide region of biological interest that contains one or more amino acids experimentally shown to bind to a ligand." [EBIBS:GAR]	47082	\N	biosapiens	sequence	0	SO	polypeptide_binding_motif	polypeptide_binding_motif
SO:0100001	SO:0100018	biosapiens	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0100018	"A polypeptide binding motif is a short (up to 20 amino acids) polypeptide region of biological interest that contains one or more amino acids experimentally shown to bind to a ligand." [EBIBS:GAR]	491900	biosapiens	biosapiens	sequence	1	SO	biochemical_region_of_peptide	polypeptide_binding_motif
SO:0001067	SO:0100001	biosapiens	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0100018	"A polypeptide binding motif is a short (up to 20 amino acids) polypeptide region of biological interest that contains one or more amino acids experimentally shown to bind to a ligand." [EBIBS:GAR]	1074595	biosapiens	biosapiens	sequence	2	SO	polypeptide_motif	polypeptide_binding_motif
SO:0100021	SO:0001067	biosapiens	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0100018	"A polypeptide binding motif is a short (up to 20 amino acids) polypeptide region of biological interest that contains one or more amino acids experimentally shown to bind to a ligand." [EBIBS:GAR]	1905772	biosapiens	biosapiens	sequence	3	SO	polypeptide_conserved_region	polypeptide_binding_motif
SO:0000839	SO:0100021	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0100018	"A polypeptide binding motif is a short (up to 20 amino acids) polypeptide region of biological interest that contains one or more amino acids experimentally shown to bind to a ligand." [EBIBS:GAR]	2930205	biosapiens	biosapiens,SOFA	sequence	4	SO	polypeptide_region	polypeptide_binding_motif
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0100018	"A polypeptide binding motif is a short (up to 20 amino acids) polypeptide region of biological interest that contains one or more amino acids experimentally shown to bind to a ligand." [EBIBS:GAR]	4003180	biosapiens,SOFA	SOFA	sequence	5	SO	polypeptide	polypeptide_binding_motif
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100018	"A polypeptide binding motif is a short (up to 20 amino acids) polypeptide region of biological interest that contains one or more amino acids experimentally shown to bind to a ligand." [EBIBS:GAR]	4003181	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	polypeptide_binding_motif
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100018	"A polypeptide binding motif is a short (up to 20 amino acids) polypeptide region of biological interest that contains one or more amino acids experimentally shown to bind to a ligand." [EBIBS:GAR]	4967296	SOFA	SOFA	sequence	6	SO	biological_region	polypeptide_binding_motif
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0100018	"A polypeptide binding motif is a short (up to 20 amino acids) polypeptide region of biological interest that contains one or more amino acids experimentally shown to bind to a ligand." [EBIBS:GAR]	5741731	SOFA	SOFA	sequence	7	SO	region	polypeptide_binding_motif
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0100018	"A polypeptide binding motif is a short (up to 20 amino acids) polypeptide region of biological interest that contains one or more amino acids experimentally shown to bind to a ligand." [EBIBS:GAR]	6146698	SOFA	SOFA	sequence	8	SO	sequence_feature	polypeptide_binding_motif
SO:0100019	\N	biosapiens	"A polypeptide catalytic motif is a short (up to 20 amino acids) polypeptide region that contains one or more active site residues." [EBIBS:GAR]	SO:0100019	"A polypeptide catalytic motif is a short (up to 20 amino acids) polypeptide region that contains one or more active site residues." [EBIBS:GAR]	47083	\N	biosapiens	sequence	0	SO	polypeptide_catalytic_motif	polypeptide_catalytic_motif
SO:0100001	SO:0100019	biosapiens	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0100019	"A polypeptide catalytic motif is a short (up to 20 amino acids) polypeptide region that contains one or more active site residues." [EBIBS:GAR]	491901	biosapiens	biosapiens	sequence	1	SO	biochemical_region_of_peptide	polypeptide_catalytic_motif
SO:0001067	SO:0100001	biosapiens	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0100019	"A polypeptide catalytic motif is a short (up to 20 amino acids) polypeptide region that contains one or more active site residues." [EBIBS:GAR]	1074596	biosapiens	biosapiens	sequence	2	SO	polypeptide_motif	polypeptide_catalytic_motif
SO:0100021	SO:0001067	biosapiens	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0100019	"A polypeptide catalytic motif is a short (up to 20 amino acids) polypeptide region that contains one or more active site residues." [EBIBS:GAR]	1905773	biosapiens	biosapiens	sequence	3	SO	polypeptide_conserved_region	polypeptide_catalytic_motif
SO:0000839	SO:0100021	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0100019	"A polypeptide catalytic motif is a short (up to 20 amino acids) polypeptide region that contains one or more active site residues." [EBIBS:GAR]	2930206	biosapiens	biosapiens,SOFA	sequence	4	SO	polypeptide_region	polypeptide_catalytic_motif
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0100019	"A polypeptide catalytic motif is a short (up to 20 amino acids) polypeptide region that contains one or more active site residues." [EBIBS:GAR]	4003182	biosapiens,SOFA	SOFA	sequence	5	SO	polypeptide	polypeptide_catalytic_motif
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100019	"A polypeptide catalytic motif is a short (up to 20 amino acids) polypeptide region that contains one or more active site residues." [EBIBS:GAR]	4003183	biosapiens,SOFA	SOFA	sequence	5	SO	biological_region	polypeptide_catalytic_motif
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100019	"A polypeptide catalytic motif is a short (up to 20 amino acids) polypeptide region that contains one or more active site residues." [EBIBS:GAR]	4967298	SOFA	SOFA	sequence	6	SO	biological_region	polypeptide_catalytic_motif
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0100019	"A polypeptide catalytic motif is a short (up to 20 amino acids) polypeptide region that contains one or more active site residues." [EBIBS:GAR]	5741733	SOFA	SOFA	sequence	7	SO	region	polypeptide_catalytic_motif
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0100019	"A polypeptide catalytic motif is a short (up to 20 amino acids) polypeptide region that contains one or more active site residues." [EBIBS:GAR]	6146699	SOFA	SOFA	sequence	8	SO	sequence_feature	polypeptide_catalytic_motif
SO:0100020	\N	biosapiens	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with DNA." [EBIBS:GAR, SO:ke]	SO:0100020	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with DNA." [EBIBS:GAR, SO:ke]	47084	\N	biosapiens	sequence	0	SO	polypeptide_DNA_contact	polypeptide_DNA_contact
SO:0001429	SO:0100020	biosapiens	"A binding site that, in the molecule, interacts selectively and non-covalently with DNA." [SO:ke]	SO:0100020	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with DNA." [EBIBS:GAR, SO:ke]	491902	biosapiens	\N	sequence	1	SO	DNA_binding_site	polypeptide_DNA_contact
SO:0100002	SO:0100020	biosapiens	"A region that is involved a contact with another molecule." [EBIBS:GAR]	SO:0100020	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with DNA." [EBIBS:GAR, SO:ke]	491903	biosapiens	biosapiens	sequence	1	SO	molecular_contact_region	polypeptide_DNA_contact
SO:0001655	SO:0001429	biosapiens	"A binding site that, in the molecule, interacts selectively and non-covalently with nucleotide residues." [SO:cb]	SO:0100020	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with DNA." [EBIBS:GAR, SO:ke]	1074597	\N	\N	sequence	2	SO	nucleotide_binding_site	polypeptide_DNA_contact
SO:0100001	SO:0100002	biosapiens	"A region of a peptide that is involved in a biochemical function." [EBIBS:GAR]	SO:0100020	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with DNA." [EBIBS:GAR, SO:ke]	1074598	biosapiens	biosapiens	sequence	2	SO	biochemical_region_of_peptide	polypeptide_DNA_contact
SO:0000409	SO:0001655	biosapiens	"A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." [EBIBS:GAR, SO:ke]	SO:0100020	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with DNA." [EBIBS:GAR, SO:ke]	1905774	\N	biosapiens,SOFA	sequence	3	SO	binding_site	polypeptide_DNA_contact
SO:0001067	SO:0100001	biosapiens	"A sequence motif is a short (up to 20 amino acids) region of biological interest. Such motifs, although they are too short to constitute functional domains, share sequence similarities and are conserved in different proteins. They display a common function (protein-binding, subcellular location etc.)." [EBIBS:GAR, UniProt:curation_manual]	SO:0100020	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with DNA." [EBIBS:GAR, SO:ke]	1905775	biosapiens	biosapiens	sequence	3	SO	polypeptide_motif	polypeptide_DNA_contact
SO:0001411	SO:0000409	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100020	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with DNA." [EBIBS:GAR, SO:ke]	2930207	biosapiens,SOFA	SOFA	sequence	4	SO	biological_region	polypeptide_DNA_contact
SO:0100021	SO:0001067	biosapiens	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0100020	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with DNA." [EBIBS:GAR, SO:ke]	2930208	biosapiens	biosapiens	sequence	4	SO	polypeptide_conserved_region	polypeptide_DNA_contact
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0100020	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with DNA." [EBIBS:GAR, SO:ke]	6311361	SOFA	SOFA	sequence	8	SO	region	polypeptide_DNA_contact
SO:0000839	SO:0100021	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0100020	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with DNA." [EBIBS:GAR, SO:ke]	4003185	biosapiens	biosapiens,SOFA	sequence	5	SO	polypeptide_region	polypeptide_DNA_contact
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0100020	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with DNA." [EBIBS:GAR, SO:ke]	6469782	SOFA	SOFA	sequence	9	SO	sequence_feature	polypeptide_DNA_contact
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0100020	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with DNA." [EBIBS:GAR, SO:ke]	4967301	biosapiens,SOFA	SOFA	sequence	6	SO	polypeptide	polypeptide_DNA_contact
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100020	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with DNA." [EBIBS:GAR, SO:ke]	4967302	biosapiens,SOFA	SOFA	sequence	6	SO	biological_region	polypeptide_DNA_contact
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100020	"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with DNA." [EBIBS:GAR, SO:ke]	5741735	SOFA	SOFA	sequence	7	SO	biological_region	polypeptide_DNA_contact
SO:0100021	\N	biosapiens	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	SO:0100021	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	47085	\N	biosapiens	sequence	0	SO	polypeptide_conserved_region	polypeptide_conserved_region
SO:0000839	SO:0100021	biosapiens	"Biological sequence region that can be assigned to a specific subsequence of a polypeptide." [SO:GAR, SO:ke]	SO:0100021	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	491904	biosapiens	biosapiens,SOFA	sequence	1	SO	polypeptide_region	polypeptide_conserved_region
SO:0000104	SO:0000839	biosapiens	"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation." [SO:ma]	SO:0100021	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	1074599	biosapiens,SOFA	SOFA	sequence	2	SO	polypeptide	polypeptide_conserved_region
SO:0001411	SO:0000839	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100021	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	1074600	biosapiens,SOFA	SOFA	sequence	2	SO	biological_region	polypeptide_conserved_region
SO:0001411	SO:0000104	biosapiens	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:0100021	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	1905776	SOFA	SOFA	sequence	3	SO	biological_region	polypeptide_conserved_region
SO:0000001	SO:0001411	biosapiens	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:0100021	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	2930209	SOFA	SOFA	sequence	4	SO	region	polypeptide_conserved_region
SO:0000110	SO:0000001	biosapiens	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:0100021	"A subsection of sequence with biological interest that is conserved in different proteins. They may or may not have functional or structural significance within the proteins in which they are found." [EBIBS:GAR]	3174045	SOFA	SOFA	sequence	5	SO	sequence_feature	polypeptide_conserved_region
SO:1000002	\N	SOFA	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	SO:1000002	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	47086	\N	SOFA	sequence	0	SO	substitution	substitution
SO:0001059	SO:1000002	SOFA	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000002	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	491905	SOFA	SOFA	sequence	1	SO	sequence_alteration	substitution
SO:0001411	SO:1000002	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1000002	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	491906	SOFA	SOFA	sequence	1	SO	biological_region	substitution
SO:0002072	SO:0001059	SOFA	"" []	SO:1000002	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	1074601	SOFA	\N	sequence	2	SO	sequence_comparison	substitution
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1000002	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	1074602	SOFA	SOFA	sequence	2	SO	region	substitution
SO:0000110	SO:0002072	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000002	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	1905778	\N	SOFA	sequence	3	SO	sequence_feature	substitution
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000002	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	1905779	SOFA	SOFA	sequence	3	SO	sequence_feature	substitution
SO:1000005	\N	SOFA	"When no simple or well defined DNA mutation event describes the observed DNA change, the keyword \\"complex\\" should be used. Usually there are multiple equally plausible explanations for the change." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	SO:1000005	"When no simple or well defined DNA mutation event describes the observed DNA change, the keyword \\"complex\\" should be used. Usually there are multiple equally plausible explanations for the change." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	47087	\N	SOFA	sequence	0	SO	complex_substitution	complex_substitution
SO:1000002	SO:1000005	SOFA	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	SO:1000005	"When no simple or well defined DNA mutation event describes the observed DNA change, the keyword \\"complex\\" should be used. Usually there are multiple equally plausible explanations for the change." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	491907	SOFA	SOFA	sequence	1	SO	substitution	complex_substitution
SO:0001059	SO:1000002	SOFA	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000005	"When no simple or well defined DNA mutation event describes the observed DNA change, the keyword \\"complex\\" should be used. Usually there are multiple equally plausible explanations for the change." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	1074603	SOFA	SOFA	sequence	2	SO	sequence_alteration	complex_substitution
SO:0001411	SO:1000002	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1000005	"When no simple or well defined DNA mutation event describes the observed DNA change, the keyword \\"complex\\" should be used. Usually there are multiple equally plausible explanations for the change." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	1074604	SOFA	SOFA	sequence	2	SO	biological_region	complex_substitution
SO:0002072	SO:0001059	SOFA	"" []	SO:1000005	"When no simple or well defined DNA mutation event describes the observed DNA change, the keyword \\"complex\\" should be used. Usually there are multiple equally plausible explanations for the change." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	1905780	SOFA	\N	sequence	3	SO	sequence_comparison	complex_substitution
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1000005	"When no simple or well defined DNA mutation event describes the observed DNA change, the keyword \\"complex\\" should be used. Usually there are multiple equally plausible explanations for the change." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	1905781	SOFA	SOFA	sequence	3	SO	region	complex_substitution
SO:0000110	SO:0002072	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000005	"When no simple or well defined DNA mutation event describes the observed DNA change, the keyword \\"complex\\" should be used. Usually there are multiple equally plausible explanations for the change." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	2930211	\N	SOFA	sequence	4	SO	sequence_feature	complex_substitution
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000005	"When no simple or well defined DNA mutation event describes the observed DNA change, the keyword \\"complex\\" should be used. Usually there are multiple equally plausible explanations for the change." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	2930212	SOFA	SOFA	sequence	4	SO	sequence_feature	complex_substitution
SO:1000008	\N	SOFA	"A single nucleotide change which has occurred at the same position of a corresponding nucleotide in a reference sequence." [SO:immuno_workshop]	SO:1000008	"A single nucleotide change which has occurred at the same position of a corresponding nucleotide in a reference sequence." [SO:immuno_workshop]	47088	\N	SOFA	sequence	0	SO	point_mutation	point_mutation
SO:0001483	SO:1000008	SOFA	"SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist." [SO:bm]	SO:1000008	"A single nucleotide change which has occurred at the same position of a corresponding nucleotide in a reference sequence." [SO:immuno_workshop]	491908	SOFA	SOFA	sequence	1	SO	SNV	point_mutation
SO:1000002	SO:0001483	SOFA	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	SO:1000008	"A single nucleotide change which has occurred at the same position of a corresponding nucleotide in a reference sequence." [SO:immuno_workshop]	1074605	SOFA	SOFA	sequence	2	SO	substitution	point_mutation
SO:0001059	SO:1000002	SOFA	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000008	"A single nucleotide change which has occurred at the same position of a corresponding nucleotide in a reference sequence." [SO:immuno_workshop]	1905782	SOFA	SOFA	sequence	3	SO	sequence_alteration	point_mutation
SO:0001411	SO:1000002	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1000008	"A single nucleotide change which has occurred at the same position of a corresponding nucleotide in a reference sequence." [SO:immuno_workshop]	1905783	SOFA	SOFA	sequence	3	SO	biological_region	point_mutation
SO:0002072	SO:0001059	SOFA	"" []	SO:1000008	"A single nucleotide change which has occurred at the same position of a corresponding nucleotide in a reference sequence." [SO:immuno_workshop]	2930213	SOFA	\N	sequence	4	SO	sequence_comparison	point_mutation
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1000008	"A single nucleotide change which has occurred at the same position of a corresponding nucleotide in a reference sequence." [SO:immuno_workshop]	2930214	SOFA	SOFA	sequence	4	SO	region	point_mutation
SO:0000110	SO:0002072	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000008	"A single nucleotide change which has occurred at the same position of a corresponding nucleotide in a reference sequence." [SO:immuno_workshop]	4003186	\N	SOFA	sequence	5	SO	sequence_feature	point_mutation
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000008	"A single nucleotide change which has occurred at the same position of a corresponding nucleotide in a reference sequence." [SO:immuno_workshop]	4003187	SOFA	SOFA	sequence	5	SO	sequence_feature	point_mutation
SO:1000009	\N	\N	"Change of a pyrimidine nucleotide, C or T, into an other pyrimidine nucleotide, or change of a purine nucleotide, A or G, into an other purine nucleotide." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	SO:1000009	"Change of a pyrimidine nucleotide, C or T, into an other pyrimidine nucleotide, or change of a purine nucleotide, A or G, into an other purine nucleotide." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	47089	\N	\N	sequence	0	SO	transition	transition
SO:0001483	SO:1000009	\N	"SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist." [SO:bm]	SO:1000009	"Change of a pyrimidine nucleotide, C or T, into an other pyrimidine nucleotide, or change of a purine nucleotide, A or G, into an other purine nucleotide." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	491909	\N	SOFA	sequence	1	SO	SNV	transition
SO:1000002	SO:0001483	\N	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	SO:1000009	"Change of a pyrimidine nucleotide, C or T, into an other pyrimidine nucleotide, or change of a purine nucleotide, A or G, into an other purine nucleotide." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	1074606	SOFA	SOFA	sequence	2	SO	substitution	transition
SO:0001059	SO:1000002	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000009	"Change of a pyrimidine nucleotide, C or T, into an other pyrimidine nucleotide, or change of a purine nucleotide, A or G, into an other purine nucleotide." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	1905784	SOFA	SOFA	sequence	3	SO	sequence_alteration	transition
SO:0001411	SO:1000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1000009	"Change of a pyrimidine nucleotide, C or T, into an other pyrimidine nucleotide, or change of a purine nucleotide, A or G, into an other purine nucleotide." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	1905785	SOFA	SOFA	sequence	3	SO	biological_region	transition
SO:0002072	SO:0001059	\N	"" []	SO:1000009	"Change of a pyrimidine nucleotide, C or T, into an other pyrimidine nucleotide, or change of a purine nucleotide, A or G, into an other purine nucleotide." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	2930215	SOFA	\N	sequence	4	SO	sequence_comparison	transition
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1000009	"Change of a pyrimidine nucleotide, C or T, into an other pyrimidine nucleotide, or change of a purine nucleotide, A or G, into an other purine nucleotide." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	2930216	SOFA	SOFA	sequence	4	SO	region	transition
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000009	"Change of a pyrimidine nucleotide, C or T, into an other pyrimidine nucleotide, or change of a purine nucleotide, A or G, into an other purine nucleotide." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	4003188	\N	SOFA	sequence	5	SO	sequence_feature	transition
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000009	"Change of a pyrimidine nucleotide, C or T, into an other pyrimidine nucleotide, or change of a purine nucleotide, A or G, into an other purine nucleotide." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	4003189	SOFA	SOFA	sequence	5	SO	sequence_feature	transition
SO:1000010	\N	\N	"A substitution of a pyrimidine, C or T, for another pyrimidine." [SO:ke]	SO:1000010	"A substitution of a pyrimidine, C or T, for another pyrimidine." [SO:ke]	47090	\N	\N	sequence	0	SO	pyrimidine_transition	pyrimidine_transition
SO:1000009	SO:1000010	\N	"Change of a pyrimidine nucleotide, C or T, into an other pyrimidine nucleotide, or change of a purine nucleotide, A or G, into an other purine nucleotide." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	SO:1000010	"A substitution of a pyrimidine, C or T, for another pyrimidine." [SO:ke]	491910	\N	\N	sequence	1	SO	transition	pyrimidine_transition
SO:0001483	SO:1000009	\N	"SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist." [SO:bm]	SO:1000010	"A substitution of a pyrimidine, C or T, for another pyrimidine." [SO:ke]	1074607	\N	SOFA	sequence	2	SO	SNV	pyrimidine_transition
SO:1000002	SO:0001483	\N	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	SO:1000010	"A substitution of a pyrimidine, C or T, for another pyrimidine." [SO:ke]	1905786	SOFA	SOFA	sequence	3	SO	substitution	pyrimidine_transition
SO:0001059	SO:1000002	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000010	"A substitution of a pyrimidine, C or T, for another pyrimidine." [SO:ke]	2930217	SOFA	SOFA	sequence	4	SO	sequence_alteration	pyrimidine_transition
SO:0001411	SO:1000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1000010	"A substitution of a pyrimidine, C or T, for another pyrimidine." [SO:ke]	2930218	SOFA	SOFA	sequence	4	SO	biological_region	pyrimidine_transition
SO:0002072	SO:0001059	\N	"" []	SO:1000010	"A substitution of a pyrimidine, C or T, for another pyrimidine." [SO:ke]	4003190	SOFA	\N	sequence	5	SO	sequence_comparison	pyrimidine_transition
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1000010	"A substitution of a pyrimidine, C or T, for another pyrimidine." [SO:ke]	4003191	SOFA	SOFA	sequence	5	SO	region	pyrimidine_transition
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000010	"A substitution of a pyrimidine, C or T, for another pyrimidine." [SO:ke]	4967303	\N	SOFA	sequence	6	SO	sequence_feature	pyrimidine_transition
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000010	"A substitution of a pyrimidine, C or T, for another pyrimidine." [SO:ke]	4967304	SOFA	SOFA	sequence	6	SO	sequence_feature	pyrimidine_transition
SO:1000011	\N	\N	"A transition of a cytidine to a thymine." [SO:ke]	SO:1000011	"A transition of a cytidine to a thymine." [SO:ke]	47091	\N	\N	sequence	0	SO	C_to_T_transition	C_to_T_transition
SO:1000010	SO:1000011	\N	"A substitution of a pyrimidine, C or T, for another pyrimidine." [SO:ke]	SO:1000011	"A transition of a cytidine to a thymine." [SO:ke]	491911	\N	\N	sequence	1	SO	pyrimidine_transition	C_to_T_transition
SO:1000009	SO:1000010	\N	"Change of a pyrimidine nucleotide, C or T, into an other pyrimidine nucleotide, or change of a purine nucleotide, A or G, into an other purine nucleotide." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	SO:1000011	"A transition of a cytidine to a thymine." [SO:ke]	1074608	\N	\N	sequence	2	SO	transition	C_to_T_transition
SO:0001483	SO:1000009	\N	"SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist." [SO:bm]	SO:1000011	"A transition of a cytidine to a thymine." [SO:ke]	1905787	\N	SOFA	sequence	3	SO	SNV	C_to_T_transition
SO:1000002	SO:0001483	\N	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	SO:1000011	"A transition of a cytidine to a thymine." [SO:ke]	2930219	SOFA	SOFA	sequence	4	SO	substitution	C_to_T_transition
SO:0001059	SO:1000002	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000011	"A transition of a cytidine to a thymine." [SO:ke]	4003192	SOFA	SOFA	sequence	5	SO	sequence_alteration	C_to_T_transition
SO:0001411	SO:1000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1000011	"A transition of a cytidine to a thymine." [SO:ke]	4003193	SOFA	SOFA	sequence	5	SO	biological_region	C_to_T_transition
SO:0002072	SO:0001059	\N	"" []	SO:1000011	"A transition of a cytidine to a thymine." [SO:ke]	4967305	SOFA	\N	sequence	6	SO	sequence_comparison	C_to_T_transition
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1000011	"A transition of a cytidine to a thymine." [SO:ke]	4967306	SOFA	SOFA	sequence	6	SO	region	C_to_T_transition
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000011	"A transition of a cytidine to a thymine." [SO:ke]	5741737	\N	SOFA	sequence	7	SO	sequence_feature	C_to_T_transition
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000011	"A transition of a cytidine to a thymine." [SO:ke]	5741738	SOFA	SOFA	sequence	7	SO	sequence_feature	C_to_T_transition
SO:1000012	\N	\N	"The transition of cytidine to thymine occurring at a pCpG site as a consequence of the spontaneous deamination of 5'-methylcytidine." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	SO:1000012	"The transition of cytidine to thymine occurring at a pCpG site as a consequence of the spontaneous deamination of 5'-methylcytidine." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	47092	\N	\N	sequence	0	SO	C_to_T_transition_at_pCpG_site	C_to_T_transition_at_pCpG_site
SO:1000011	SO:1000012	\N	"A transition of a cytidine to a thymine." [SO:ke]	SO:1000012	"The transition of cytidine to thymine occurring at a pCpG site as a consequence of the spontaneous deamination of 5'-methylcytidine." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	491912	\N	\N	sequence	1	SO	C_to_T_transition	C_to_T_transition_at_pCpG_site
SO:1000010	SO:1000011	\N	"A substitution of a pyrimidine, C or T, for another pyrimidine." [SO:ke]	SO:1000012	"The transition of cytidine to thymine occurring at a pCpG site as a consequence of the spontaneous deamination of 5'-methylcytidine." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	1074609	\N	\N	sequence	2	SO	pyrimidine_transition	C_to_T_transition_at_pCpG_site
SO:1000009	SO:1000010	\N	"Change of a pyrimidine nucleotide, C or T, into an other pyrimidine nucleotide, or change of a purine nucleotide, A or G, into an other purine nucleotide." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	SO:1000012	"The transition of cytidine to thymine occurring at a pCpG site as a consequence of the spontaneous deamination of 5'-methylcytidine." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	1905788	\N	\N	sequence	3	SO	transition	C_to_T_transition_at_pCpG_site
SO:0001483	SO:1000009	\N	"SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist." [SO:bm]	SO:1000012	"The transition of cytidine to thymine occurring at a pCpG site as a consequence of the spontaneous deamination of 5'-methylcytidine." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	2930220	\N	SOFA	sequence	4	SO	SNV	C_to_T_transition_at_pCpG_site
SO:1000002	SO:0001483	\N	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	SO:1000012	"The transition of cytidine to thymine occurring at a pCpG site as a consequence of the spontaneous deamination of 5'-methylcytidine." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	4003194	SOFA	SOFA	sequence	5	SO	substitution	C_to_T_transition_at_pCpG_site
SO:0001059	SO:1000002	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000012	"The transition of cytidine to thymine occurring at a pCpG site as a consequence of the spontaneous deamination of 5'-methylcytidine." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	4967307	SOFA	SOFA	sequence	6	SO	sequence_alteration	C_to_T_transition_at_pCpG_site
SO:0001411	SO:1000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1000012	"The transition of cytidine to thymine occurring at a pCpG site as a consequence of the spontaneous deamination of 5'-methylcytidine." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	4967308	SOFA	SOFA	sequence	6	SO	biological_region	C_to_T_transition_at_pCpG_site
SO:0002072	SO:0001059	\N	"" []	SO:1000012	"The transition of cytidine to thymine occurring at a pCpG site as a consequence of the spontaneous deamination of 5'-methylcytidine." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	5741739	SOFA	\N	sequence	7	SO	sequence_comparison	C_to_T_transition_at_pCpG_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1000012	"The transition of cytidine to thymine occurring at a pCpG site as a consequence of the spontaneous deamination of 5'-methylcytidine." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	5741740	SOFA	SOFA	sequence	7	SO	region	C_to_T_transition_at_pCpG_site
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000012	"The transition of cytidine to thymine occurring at a pCpG site as a consequence of the spontaneous deamination of 5'-methylcytidine." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	6311362	\N	SOFA	sequence	8	SO	sequence_feature	C_to_T_transition_at_pCpG_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000012	"The transition of cytidine to thymine occurring at a pCpG site as a consequence of the spontaneous deamination of 5'-methylcytidine." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	6311363	SOFA	SOFA	sequence	8	SO	sequence_feature	C_to_T_transition_at_pCpG_site
SO:1000013	\N	\N	"" []	SO:1000013	"" []	47093	\N	\N	sequence	0	SO	T_to_C_transition	T_to_C_transition
SO:1000010	SO:1000013	\N	"A substitution of a pyrimidine, C or T, for another pyrimidine." [SO:ke]	SO:1000013	"" []	491913	\N	\N	sequence	1	SO	pyrimidine_transition	T_to_C_transition
SO:1000009	SO:1000010	\N	"Change of a pyrimidine nucleotide, C or T, into an other pyrimidine nucleotide, or change of a purine nucleotide, A or G, into an other purine nucleotide." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	SO:1000013	"" []	1074610	\N	\N	sequence	2	SO	transition	T_to_C_transition
SO:0001483	SO:1000009	\N	"SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist." [SO:bm]	SO:1000013	"" []	1905789	\N	SOFA	sequence	3	SO	SNV	T_to_C_transition
SO:1000002	SO:0001483	\N	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	SO:1000013	"" []	2930221	SOFA	SOFA	sequence	4	SO	substitution	T_to_C_transition
SO:0001059	SO:1000002	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000013	"" []	4003195	SOFA	SOFA	sequence	5	SO	sequence_alteration	T_to_C_transition
SO:0001411	SO:1000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1000013	"" []	4003196	SOFA	SOFA	sequence	5	SO	biological_region	T_to_C_transition
SO:0002072	SO:0001059	\N	"" []	SO:1000013	"" []	4967309	SOFA	\N	sequence	6	SO	sequence_comparison	T_to_C_transition
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1000013	"" []	4967310	SOFA	SOFA	sequence	6	SO	region	T_to_C_transition
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000013	"" []	5741741	\N	SOFA	sequence	7	SO	sequence_feature	T_to_C_transition
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000013	"" []	5741742	SOFA	SOFA	sequence	7	SO	sequence_feature	T_to_C_transition
SO:1000014	\N	\N	"A substitution of a purine, A or G, for another purine." [SO:ke]	SO:1000014	"A substitution of a purine, A or G, for another purine." [SO:ke]	47094	\N	\N	sequence	0	SO	purine_transition	purine_transition
SO:1000009	SO:1000014	\N	"Change of a pyrimidine nucleotide, C or T, into an other pyrimidine nucleotide, or change of a purine nucleotide, A or G, into an other purine nucleotide." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	SO:1000014	"A substitution of a purine, A or G, for another purine." [SO:ke]	491914	\N	\N	sequence	1	SO	transition	purine_transition
SO:0001483	SO:1000009	\N	"SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist." [SO:bm]	SO:1000014	"A substitution of a purine, A or G, for another purine." [SO:ke]	1074611	\N	SOFA	sequence	2	SO	SNV	purine_transition
SO:1000002	SO:0001483	\N	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	SO:1000014	"A substitution of a purine, A or G, for another purine." [SO:ke]	1905790	SOFA	SOFA	sequence	3	SO	substitution	purine_transition
SO:0001059	SO:1000002	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000014	"A substitution of a purine, A or G, for another purine." [SO:ke]	2930222	SOFA	SOFA	sequence	4	SO	sequence_alteration	purine_transition
SO:0001411	SO:1000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1000014	"A substitution of a purine, A or G, for another purine." [SO:ke]	2930223	SOFA	SOFA	sequence	4	SO	biological_region	purine_transition
SO:0002072	SO:0001059	\N	"" []	SO:1000014	"A substitution of a purine, A or G, for another purine." [SO:ke]	4003197	SOFA	\N	sequence	5	SO	sequence_comparison	purine_transition
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1000014	"A substitution of a purine, A or G, for another purine." [SO:ke]	4003198	SOFA	SOFA	sequence	5	SO	region	purine_transition
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000014	"A substitution of a purine, A or G, for another purine." [SO:ke]	4967311	\N	SOFA	sequence	6	SO	sequence_feature	purine_transition
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000014	"A substitution of a purine, A or G, for another purine." [SO:ke]	4967312	SOFA	SOFA	sequence	6	SO	sequence_feature	purine_transition
SO:1000015	\N	\N	"A transition of an adenine to a guanine." [SO:ke]	SO:1000015	"A transition of an adenine to a guanine." [SO:ke]	47095	\N	\N	sequence	0	SO	A_to_G_transition	A_to_G_transition
SO:1000014	SO:1000015	\N	"A substitution of a purine, A or G, for another purine." [SO:ke]	SO:1000015	"A transition of an adenine to a guanine." [SO:ke]	491915	\N	\N	sequence	1	SO	purine_transition	A_to_G_transition
SO:1000009	SO:1000014	\N	"Change of a pyrimidine nucleotide, C or T, into an other pyrimidine nucleotide, or change of a purine nucleotide, A or G, into an other purine nucleotide." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	SO:1000015	"A transition of an adenine to a guanine." [SO:ke]	1074612	\N	\N	sequence	2	SO	transition	A_to_G_transition
SO:0001483	SO:1000009	\N	"SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist." [SO:bm]	SO:1000015	"A transition of an adenine to a guanine." [SO:ke]	1905791	\N	SOFA	sequence	3	SO	SNV	A_to_G_transition
SO:1000002	SO:0001483	\N	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	SO:1000015	"A transition of an adenine to a guanine." [SO:ke]	2930224	SOFA	SOFA	sequence	4	SO	substitution	A_to_G_transition
SO:0001059	SO:1000002	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000015	"A transition of an adenine to a guanine." [SO:ke]	4003199	SOFA	SOFA	sequence	5	SO	sequence_alteration	A_to_G_transition
SO:0001411	SO:1000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1000015	"A transition of an adenine to a guanine." [SO:ke]	4003200	SOFA	SOFA	sequence	5	SO	biological_region	A_to_G_transition
SO:0002072	SO:0001059	\N	"" []	SO:1000015	"A transition of an adenine to a guanine." [SO:ke]	4967313	SOFA	\N	sequence	6	SO	sequence_comparison	A_to_G_transition
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1000015	"A transition of an adenine to a guanine." [SO:ke]	4967314	SOFA	SOFA	sequence	6	SO	region	A_to_G_transition
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000015	"A transition of an adenine to a guanine." [SO:ke]	5741743	\N	SOFA	sequence	7	SO	sequence_feature	A_to_G_transition
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000015	"A transition of an adenine to a guanine." [SO:ke]	5741744	SOFA	SOFA	sequence	7	SO	sequence_feature	A_to_G_transition
SO:1000016	\N	\N	"A transition of a guanine to an adenine." [SO:ke]	SO:1000016	"A transition of a guanine to an adenine." [SO:ke]	47096	\N	\N	sequence	0	SO	G_to_A_transition	G_to_A_transition
SO:1000014	SO:1000016	\N	"A substitution of a purine, A or G, for another purine." [SO:ke]	SO:1000016	"A transition of a guanine to an adenine." [SO:ke]	491916	\N	\N	sequence	1	SO	purine_transition	G_to_A_transition
SO:1000009	SO:1000014	\N	"Change of a pyrimidine nucleotide, C or T, into an other pyrimidine nucleotide, or change of a purine nucleotide, A or G, into an other purine nucleotide." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	SO:1000016	"A transition of a guanine to an adenine." [SO:ke]	1074613	\N	\N	sequence	2	SO	transition	G_to_A_transition
SO:0001483	SO:1000009	\N	"SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist." [SO:bm]	SO:1000016	"A transition of a guanine to an adenine." [SO:ke]	1905792	\N	SOFA	sequence	3	SO	SNV	G_to_A_transition
SO:1000002	SO:0001483	\N	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	SO:1000016	"A transition of a guanine to an adenine." [SO:ke]	2930225	SOFA	SOFA	sequence	4	SO	substitution	G_to_A_transition
SO:0001059	SO:1000002	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000016	"A transition of a guanine to an adenine." [SO:ke]	4003201	SOFA	SOFA	sequence	5	SO	sequence_alteration	G_to_A_transition
SO:0001411	SO:1000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1000016	"A transition of a guanine to an adenine." [SO:ke]	4003202	SOFA	SOFA	sequence	5	SO	biological_region	G_to_A_transition
SO:0002072	SO:0001059	\N	"" []	SO:1000016	"A transition of a guanine to an adenine." [SO:ke]	4967315	SOFA	\N	sequence	6	SO	sequence_comparison	G_to_A_transition
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1000016	"A transition of a guanine to an adenine." [SO:ke]	4967316	SOFA	SOFA	sequence	6	SO	region	G_to_A_transition
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000016	"A transition of a guanine to an adenine." [SO:ke]	5741745	\N	SOFA	sequence	7	SO	sequence_feature	G_to_A_transition
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000016	"A transition of a guanine to an adenine." [SO:ke]	5741746	SOFA	SOFA	sequence	7	SO	sequence_feature	G_to_A_transition
SO:1000017	\N	\N	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G, or vice versa." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	SO:1000017	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G, or vice versa." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	47097	\N	\N	sequence	0	SO	transversion	transversion
SO:0001483	SO:1000017	\N	"SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist." [SO:bm]	SO:1000017	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G, or vice versa." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	491917	\N	SOFA	sequence	1	SO	SNV	transversion
SO:1000002	SO:0001483	\N	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	SO:1000017	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G, or vice versa." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	1074614	SOFA	SOFA	sequence	2	SO	substitution	transversion
SO:0001059	SO:1000002	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000017	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G, or vice versa." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	1905793	SOFA	SOFA	sequence	3	SO	sequence_alteration	transversion
SO:0001411	SO:1000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1000017	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G, or vice versa." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	1905794	SOFA	SOFA	sequence	3	SO	biological_region	transversion
SO:0002072	SO:0001059	\N	"" []	SO:1000017	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G, or vice versa." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	2930226	SOFA	\N	sequence	4	SO	sequence_comparison	transversion
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1000017	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G, or vice versa." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	2930227	SOFA	SOFA	sequence	4	SO	region	transversion
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000017	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G, or vice versa." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	4003203	\N	SOFA	sequence	5	SO	sequence_feature	transversion
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000017	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G, or vice versa." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	4003204	SOFA	SOFA	sequence	5	SO	sequence_feature	transversion
SO:1000018	\N	\N	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G." [SO:ke]	SO:1000018	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G." [SO:ke]	47098	\N	\N	sequence	0	SO	pyrimidine_to_purine_transversion	pyrimidine_to_purine_transversion
SO:1000017	SO:1000018	\N	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G, or vice versa." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	SO:1000018	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G." [SO:ke]	491918	\N	\N	sequence	1	SO	transversion	pyrimidine_to_purine_transversion
SO:0001483	SO:1000017	\N	"SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist." [SO:bm]	SO:1000018	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G." [SO:ke]	1074615	\N	SOFA	sequence	2	SO	SNV	pyrimidine_to_purine_transversion
SO:1000002	SO:0001483	\N	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	SO:1000018	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G." [SO:ke]	1905795	SOFA	SOFA	sequence	3	SO	substitution	pyrimidine_to_purine_transversion
SO:0001059	SO:1000002	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000018	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G." [SO:ke]	2930228	SOFA	SOFA	sequence	4	SO	sequence_alteration	pyrimidine_to_purine_transversion
SO:0001411	SO:1000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1000018	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G." [SO:ke]	2930229	SOFA	SOFA	sequence	4	SO	biological_region	pyrimidine_to_purine_transversion
SO:0002072	SO:0001059	\N	"" []	SO:1000018	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G." [SO:ke]	4003205	SOFA	\N	sequence	5	SO	sequence_comparison	pyrimidine_to_purine_transversion
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1000018	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G." [SO:ke]	4003206	SOFA	SOFA	sequence	5	SO	region	pyrimidine_to_purine_transversion
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000018	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G." [SO:ke]	4967317	\N	SOFA	sequence	6	SO	sequence_feature	pyrimidine_to_purine_transversion
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000018	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G." [SO:ke]	4967318	SOFA	SOFA	sequence	6	SO	sequence_feature	pyrimidine_to_purine_transversion
SO:1000019	\N	\N	"A transversion from cytidine to adenine." [SO:ke]	SO:1000019	"A transversion from cytidine to adenine." [SO:ke]	47099	\N	\N	sequence	0	SO	C_to_A_transversion	C_to_A_transversion
SO:1000018	SO:1000019	\N	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G." [SO:ke]	SO:1000019	"A transversion from cytidine to adenine." [SO:ke]	491919	\N	\N	sequence	1	SO	pyrimidine_to_purine_transversion	C_to_A_transversion
SO:1000017	SO:1000018	\N	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G, or vice versa." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	SO:1000019	"A transversion from cytidine to adenine." [SO:ke]	1074616	\N	\N	sequence	2	SO	transversion	C_to_A_transversion
SO:0001483	SO:1000017	\N	"SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist." [SO:bm]	SO:1000019	"A transversion from cytidine to adenine." [SO:ke]	1905796	\N	SOFA	sequence	3	SO	SNV	C_to_A_transversion
SO:1000002	SO:0001483	\N	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	SO:1000019	"A transversion from cytidine to adenine." [SO:ke]	2930230	SOFA	SOFA	sequence	4	SO	substitution	C_to_A_transversion
SO:0001059	SO:1000002	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000019	"A transversion from cytidine to adenine." [SO:ke]	4003207	SOFA	SOFA	sequence	5	SO	sequence_alteration	C_to_A_transversion
SO:0001411	SO:1000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1000019	"A transversion from cytidine to adenine." [SO:ke]	4003208	SOFA	SOFA	sequence	5	SO	biological_region	C_to_A_transversion
SO:0002072	SO:0001059	\N	"" []	SO:1000019	"A transversion from cytidine to adenine." [SO:ke]	4967319	SOFA	\N	sequence	6	SO	sequence_comparison	C_to_A_transversion
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1000019	"A transversion from cytidine to adenine." [SO:ke]	4967320	SOFA	SOFA	sequence	6	SO	region	C_to_A_transversion
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000019	"A transversion from cytidine to adenine." [SO:ke]	5741747	\N	SOFA	sequence	7	SO	sequence_feature	C_to_A_transversion
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000019	"A transversion from cytidine to adenine." [SO:ke]	5741748	SOFA	SOFA	sequence	7	SO	sequence_feature	C_to_A_transversion
SO:1000020	\N	\N	"" []	SO:1000020	"" []	47100	\N	\N	sequence	0	SO	C_to_G_transversion	C_to_G_transversion
SO:1000018	SO:1000020	\N	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G." [SO:ke]	SO:1000020	"" []	491920	\N	\N	sequence	1	SO	pyrimidine_to_purine_transversion	C_to_G_transversion
SO:1000017	SO:1000018	\N	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G, or vice versa." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	SO:1000020	"" []	1074617	\N	\N	sequence	2	SO	transversion	C_to_G_transversion
SO:0001483	SO:1000017	\N	"SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist." [SO:bm]	SO:1000020	"" []	1905797	\N	SOFA	sequence	3	SO	SNV	C_to_G_transversion
SO:1000002	SO:0001483	\N	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	SO:1000020	"" []	2930231	SOFA	SOFA	sequence	4	SO	substitution	C_to_G_transversion
SO:0001059	SO:1000002	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000020	"" []	4003209	SOFA	SOFA	sequence	5	SO	sequence_alteration	C_to_G_transversion
SO:0001411	SO:1000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1000020	"" []	4003210	SOFA	SOFA	sequence	5	SO	biological_region	C_to_G_transversion
SO:0002072	SO:0001059	\N	"" []	SO:1000020	"" []	4967321	SOFA	\N	sequence	6	SO	sequence_comparison	C_to_G_transversion
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1000020	"" []	4967322	SOFA	SOFA	sequence	6	SO	region	C_to_G_transversion
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000020	"" []	5741749	\N	SOFA	sequence	7	SO	sequence_feature	C_to_G_transversion
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000020	"" []	5741750	SOFA	SOFA	sequence	7	SO	sequence_feature	C_to_G_transversion
SO:1000021	\N	\N	"A transversion from T to A." [SO:ke]	SO:1000021	"A transversion from T to A." [SO:ke]	47101	\N	\N	sequence	0	SO	T_to_A_transversion	T_to_A_transversion
SO:1000018	SO:1000021	\N	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G." [SO:ke]	SO:1000021	"A transversion from T to A." [SO:ke]	491921	\N	\N	sequence	1	SO	pyrimidine_to_purine_transversion	T_to_A_transversion
SO:1000017	SO:1000018	\N	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G, or vice versa." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	SO:1000021	"A transversion from T to A." [SO:ke]	1074618	\N	\N	sequence	2	SO	transversion	T_to_A_transversion
SO:0001483	SO:1000017	\N	"SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist." [SO:bm]	SO:1000021	"A transversion from T to A." [SO:ke]	1905798	\N	SOFA	sequence	3	SO	SNV	T_to_A_transversion
SO:1000002	SO:0001483	\N	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	SO:1000021	"A transversion from T to A." [SO:ke]	2930232	SOFA	SOFA	sequence	4	SO	substitution	T_to_A_transversion
SO:0001059	SO:1000002	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000021	"A transversion from T to A." [SO:ke]	4003211	SOFA	SOFA	sequence	5	SO	sequence_alteration	T_to_A_transversion
SO:0001411	SO:1000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1000021	"A transversion from T to A." [SO:ke]	4003212	SOFA	SOFA	sequence	5	SO	biological_region	T_to_A_transversion
SO:0002072	SO:0001059	\N	"" []	SO:1000021	"A transversion from T to A." [SO:ke]	4967323	SOFA	\N	sequence	6	SO	sequence_comparison	T_to_A_transversion
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1000021	"A transversion from T to A." [SO:ke]	4967324	SOFA	SOFA	sequence	6	SO	region	T_to_A_transversion
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000021	"A transversion from T to A." [SO:ke]	5741751	\N	SOFA	sequence	7	SO	sequence_feature	T_to_A_transversion
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000021	"A transversion from T to A." [SO:ke]	5741752	SOFA	SOFA	sequence	7	SO	sequence_feature	T_to_A_transversion
SO:1000022	\N	\N	"A transversion from T to G." [SO:ke]	SO:1000022	"A transversion from T to G." [SO:ke]	47102	\N	\N	sequence	0	SO	T_to_G_transversion	T_to_G_transversion
SO:1000018	SO:1000022	\N	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G." [SO:ke]	SO:1000022	"A transversion from T to G." [SO:ke]	491922	\N	\N	sequence	1	SO	pyrimidine_to_purine_transversion	T_to_G_transversion
SO:1000017	SO:1000018	\N	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G, or vice versa." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	SO:1000022	"A transversion from T to G." [SO:ke]	1074619	\N	\N	sequence	2	SO	transversion	T_to_G_transversion
SO:0001483	SO:1000017	\N	"SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist." [SO:bm]	SO:1000022	"A transversion from T to G." [SO:ke]	1905799	\N	SOFA	sequence	3	SO	SNV	T_to_G_transversion
SO:1000002	SO:0001483	\N	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	SO:1000022	"A transversion from T to G." [SO:ke]	2930233	SOFA	SOFA	sequence	4	SO	substitution	T_to_G_transversion
SO:0001059	SO:1000002	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000022	"A transversion from T to G." [SO:ke]	4003213	SOFA	SOFA	sequence	5	SO	sequence_alteration	T_to_G_transversion
SO:0001411	SO:1000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1000022	"A transversion from T to G." [SO:ke]	4003214	SOFA	SOFA	sequence	5	SO	biological_region	T_to_G_transversion
SO:0002072	SO:0001059	\N	"" []	SO:1000022	"A transversion from T to G." [SO:ke]	4967325	SOFA	\N	sequence	6	SO	sequence_comparison	T_to_G_transversion
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1000022	"A transversion from T to G." [SO:ke]	4967326	SOFA	SOFA	sequence	6	SO	region	T_to_G_transversion
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000022	"A transversion from T to G." [SO:ke]	5741753	\N	SOFA	sequence	7	SO	sequence_feature	T_to_G_transversion
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000022	"A transversion from T to G." [SO:ke]	5741754	SOFA	SOFA	sequence	7	SO	sequence_feature	T_to_G_transversion
SO:1000023	\N	\N	"Change of a purine nucleotide, A or G , into a pyrimidine nucleotide C or T." [SO:ke]	SO:1000023	"Change of a purine nucleotide, A or G , into a pyrimidine nucleotide C or T." [SO:ke]	47103	\N	\N	sequence	0	SO	purine_to_pyrimidine_transversion	purine_to_pyrimidine_transversion
SO:1000017	SO:1000023	\N	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G, or vice versa." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	SO:1000023	"Change of a purine nucleotide, A or G , into a pyrimidine nucleotide C or T." [SO:ke]	491923	\N	\N	sequence	1	SO	transversion	purine_to_pyrimidine_transversion
SO:0001483	SO:1000017	\N	"SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist." [SO:bm]	SO:1000023	"Change of a purine nucleotide, A or G , into a pyrimidine nucleotide C or T." [SO:ke]	1074620	\N	SOFA	sequence	2	SO	SNV	purine_to_pyrimidine_transversion
SO:1000002	SO:0001483	\N	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	SO:1000023	"Change of a purine nucleotide, A or G , into a pyrimidine nucleotide C or T." [SO:ke]	1905800	SOFA	SOFA	sequence	3	SO	substitution	purine_to_pyrimidine_transversion
SO:0001059	SO:1000002	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000023	"Change of a purine nucleotide, A or G , into a pyrimidine nucleotide C or T." [SO:ke]	2930234	SOFA	SOFA	sequence	4	SO	sequence_alteration	purine_to_pyrimidine_transversion
SO:0001411	SO:1000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1000023	"Change of a purine nucleotide, A or G , into a pyrimidine nucleotide C or T." [SO:ke]	2930235	SOFA	SOFA	sequence	4	SO	biological_region	purine_to_pyrimidine_transversion
SO:0002072	SO:0001059	\N	"" []	SO:1000023	"Change of a purine nucleotide, A or G , into a pyrimidine nucleotide C or T." [SO:ke]	4003215	SOFA	\N	sequence	5	SO	sequence_comparison	purine_to_pyrimidine_transversion
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1000023	"Change of a purine nucleotide, A or G , into a pyrimidine nucleotide C or T." [SO:ke]	4003216	SOFA	SOFA	sequence	5	SO	region	purine_to_pyrimidine_transversion
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000023	"Change of a purine nucleotide, A or G , into a pyrimidine nucleotide C or T." [SO:ke]	4967327	\N	SOFA	sequence	6	SO	sequence_feature	purine_to_pyrimidine_transversion
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000023	"Change of a purine nucleotide, A or G , into a pyrimidine nucleotide C or T." [SO:ke]	4967328	SOFA	SOFA	sequence	6	SO	sequence_feature	purine_to_pyrimidine_transversion
SO:1000024	\N	\N	"A transversion from adenine to cytidine." [SO:ke]	SO:1000024	"A transversion from adenine to cytidine." [SO:ke]	47104	\N	\N	sequence	0	SO	A_to_C_transversion	A_to_C_transversion
SO:1000023	SO:1000024	\N	"Change of a purine nucleotide, A or G , into a pyrimidine nucleotide C or T." [SO:ke]	SO:1000024	"A transversion from adenine to cytidine." [SO:ke]	491924	\N	\N	sequence	1	SO	purine_to_pyrimidine_transversion	A_to_C_transversion
SO:1000017	SO:1000023	\N	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G, or vice versa." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	SO:1000024	"A transversion from adenine to cytidine." [SO:ke]	1074621	\N	\N	sequence	2	SO	transversion	A_to_C_transversion
SO:0001483	SO:1000017	\N	"SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist." [SO:bm]	SO:1000024	"A transversion from adenine to cytidine." [SO:ke]	1905801	\N	SOFA	sequence	3	SO	SNV	A_to_C_transversion
SO:1000002	SO:0001483	\N	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	SO:1000024	"A transversion from adenine to cytidine." [SO:ke]	2930236	SOFA	SOFA	sequence	4	SO	substitution	A_to_C_transversion
SO:0001059	SO:1000002	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000024	"A transversion from adenine to cytidine." [SO:ke]	4003217	SOFA	SOFA	sequence	5	SO	sequence_alteration	A_to_C_transversion
SO:0001411	SO:1000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1000024	"A transversion from adenine to cytidine." [SO:ke]	4003218	SOFA	SOFA	sequence	5	SO	biological_region	A_to_C_transversion
SO:0002072	SO:0001059	\N	"" []	SO:1000024	"A transversion from adenine to cytidine." [SO:ke]	4967329	SOFA	\N	sequence	6	SO	sequence_comparison	A_to_C_transversion
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1000024	"A transversion from adenine to cytidine." [SO:ke]	4967330	SOFA	SOFA	sequence	6	SO	region	A_to_C_transversion
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000024	"A transversion from adenine to cytidine." [SO:ke]	5741755	\N	SOFA	sequence	7	SO	sequence_feature	A_to_C_transversion
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000024	"A transversion from adenine to cytidine." [SO:ke]	5741756	SOFA	SOFA	sequence	7	SO	sequence_feature	A_to_C_transversion
SO:1000025	\N	\N	"A transversion from adenine to thymine." [SO:ke]	SO:1000025	"A transversion from adenine to thymine." [SO:ke]	47105	\N	\N	sequence	0	SO	A_to_T_transversion	A_to_T_transversion
SO:1000023	SO:1000025	\N	"Change of a purine nucleotide, A or G , into a pyrimidine nucleotide C or T." [SO:ke]	SO:1000025	"A transversion from adenine to thymine." [SO:ke]	491925	\N	\N	sequence	1	SO	purine_to_pyrimidine_transversion	A_to_T_transversion
SO:1000017	SO:1000023	\N	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G, or vice versa." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	SO:1000025	"A transversion from adenine to thymine." [SO:ke]	1074622	\N	\N	sequence	2	SO	transversion	A_to_T_transversion
SO:0001483	SO:1000017	\N	"SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist." [SO:bm]	SO:1000025	"A transversion from adenine to thymine." [SO:ke]	1905802	\N	SOFA	sequence	3	SO	SNV	A_to_T_transversion
SO:1000002	SO:0001483	\N	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	SO:1000025	"A transversion from adenine to thymine." [SO:ke]	2930237	SOFA	SOFA	sequence	4	SO	substitution	A_to_T_transversion
SO:0001059	SO:1000002	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000025	"A transversion from adenine to thymine." [SO:ke]	4003219	SOFA	SOFA	sequence	5	SO	sequence_alteration	A_to_T_transversion
SO:0001411	SO:1000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1000025	"A transversion from adenine to thymine." [SO:ke]	4003220	SOFA	SOFA	sequence	5	SO	biological_region	A_to_T_transversion
SO:0002072	SO:0001059	\N	"" []	SO:1000025	"A transversion from adenine to thymine." [SO:ke]	4967331	SOFA	\N	sequence	6	SO	sequence_comparison	A_to_T_transversion
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1000025	"A transversion from adenine to thymine." [SO:ke]	4967332	SOFA	SOFA	sequence	6	SO	region	A_to_T_transversion
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000025	"A transversion from adenine to thymine." [SO:ke]	5741757	\N	SOFA	sequence	7	SO	sequence_feature	A_to_T_transversion
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000025	"A transversion from adenine to thymine." [SO:ke]	5741758	SOFA	SOFA	sequence	7	SO	sequence_feature	A_to_T_transversion
SO:1000026	\N	\N	"A transversion from guanine to cytidine." [SO:ke]	SO:1000026	"A transversion from guanine to cytidine." [SO:ke]	47106	\N	\N	sequence	0	SO	G_to_C_transversion	G_to_C_transversion
SO:1000023	SO:1000026	\N	"Change of a purine nucleotide, A or G , into a pyrimidine nucleotide C or T." [SO:ke]	SO:1000026	"A transversion from guanine to cytidine." [SO:ke]	491926	\N	\N	sequence	1	SO	purine_to_pyrimidine_transversion	G_to_C_transversion
SO:1000017	SO:1000023	\N	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G, or vice versa." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	SO:1000026	"A transversion from guanine to cytidine." [SO:ke]	1074623	\N	\N	sequence	2	SO	transversion	G_to_C_transversion
SO:0001483	SO:1000017	\N	"SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist." [SO:bm]	SO:1000026	"A transversion from guanine to cytidine." [SO:ke]	1905803	\N	SOFA	sequence	3	SO	SNV	G_to_C_transversion
SO:1000002	SO:0001483	\N	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	SO:1000026	"A transversion from guanine to cytidine." [SO:ke]	2930238	SOFA	SOFA	sequence	4	SO	substitution	G_to_C_transversion
SO:0001059	SO:1000002	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000026	"A transversion from guanine to cytidine." [SO:ke]	4003221	SOFA	SOFA	sequence	5	SO	sequence_alteration	G_to_C_transversion
SO:0001411	SO:1000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1000026	"A transversion from guanine to cytidine." [SO:ke]	4003222	SOFA	SOFA	sequence	5	SO	biological_region	G_to_C_transversion
SO:0002072	SO:0001059	\N	"" []	SO:1000026	"A transversion from guanine to cytidine." [SO:ke]	4967333	SOFA	\N	sequence	6	SO	sequence_comparison	G_to_C_transversion
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1000026	"A transversion from guanine to cytidine." [SO:ke]	4967334	SOFA	SOFA	sequence	6	SO	region	G_to_C_transversion
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000026	"A transversion from guanine to cytidine." [SO:ke]	5741759	\N	SOFA	sequence	7	SO	sequence_feature	G_to_C_transversion
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000026	"A transversion from guanine to cytidine." [SO:ke]	5741760	SOFA	SOFA	sequence	7	SO	sequence_feature	G_to_C_transversion
SO:1000027	\N	\N	"A transversion from guanine to thymine." [SO:ke]	SO:1000027	"A transversion from guanine to thymine." [SO:ke]	47107	\N	\N	sequence	0	SO	G_to_T_transversion	G_to_T_transversion
SO:1000023	SO:1000027	\N	"Change of a purine nucleotide, A or G , into a pyrimidine nucleotide C or T." [SO:ke]	SO:1000027	"A transversion from guanine to thymine." [SO:ke]	491927	\N	\N	sequence	1	SO	purine_to_pyrimidine_transversion	G_to_T_transversion
SO:1000017	SO:1000023	\N	"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G, or vice versa." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	SO:1000027	"A transversion from guanine to thymine." [SO:ke]	1074624	\N	\N	sequence	2	SO	transversion	G_to_T_transversion
SO:0001483	SO:1000017	\N	"SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist." [SO:bm]	SO:1000027	"A transversion from guanine to thymine." [SO:ke]	1905804	\N	SOFA	sequence	3	SO	SNV	G_to_T_transversion
SO:1000002	SO:0001483	\N	"A sequence alteration where the length of the change in the variant is the same as that of the reference." [SO:ke]	SO:1000027	"A transversion from guanine to thymine." [SO:ke]	2930239	SOFA	SOFA	sequence	4	SO	substitution	G_to_T_transversion
SO:0001059	SO:1000002	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000027	"A transversion from guanine to thymine." [SO:ke]	4003223	SOFA	SOFA	sequence	5	SO	sequence_alteration	G_to_T_transversion
SO:0001411	SO:1000002	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1000027	"A transversion from guanine to thymine." [SO:ke]	4003224	SOFA	SOFA	sequence	5	SO	biological_region	G_to_T_transversion
SO:0002072	SO:0001059	\N	"" []	SO:1000027	"A transversion from guanine to thymine." [SO:ke]	4967335	SOFA	\N	sequence	6	SO	sequence_comparison	G_to_T_transversion
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1000027	"A transversion from guanine to thymine." [SO:ke]	4967336	SOFA	SOFA	sequence	6	SO	region	G_to_T_transversion
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000027	"A transversion from guanine to thymine." [SO:ke]	5741761	\N	SOFA	sequence	7	SO	sequence_feature	G_to_T_transversion
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000027	"A transversion from guanine to thymine." [SO:ke]	5741762	SOFA	SOFA	sequence	7	SO	sequence_feature	G_to_T_transversion
SO:1000028	\N	\N	"A chromosomal structure variation within a single chromosome." [SO:ke]	SO:1000028	"A chromosomal structure variation within a single chromosome." [SO:ke]	47108	\N	\N	sequence	0	SO	intrachromosomal_mutation	intrachromosomal_mutation
SO:1000183	SO:1000028	\N	"" []	SO:1000028	"A chromosomal structure variation within a single chromosome." [SO:ke]	491928	\N	\N	sequence	1	SO	chromosome_structure_variation	intrachromosomal_mutation
SO:0000240	SO:1000183	\N	"" []	SO:1000028	"A chromosomal structure variation within a single chromosome." [SO:ke]	1074625	\N	\N	sequence	2	SO	chromosome_variation	intrachromosomal_mutation
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000028	"A chromosomal structure variation within a single chromosome." [SO:ke]	1905805	\N	\N	sequence	3	SO	variant_collection	intrachromosomal_mutation
SO:0001524	SO:0000240	\N	"" []	SO:1000028	"A chromosomal structure variation within a single chromosome." [SO:ke]	1905806	\N	\N	sequence	3	SO	chromosomally_aberrant_genome	intrachromosomal_mutation
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000028	"A chromosomal structure variation within a single chromosome." [SO:ke]	2930240	\N	\N	sequence	4	SO	sequence_collection	intrachromosomal_mutation
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000028	"A chromosomal structure variation within a single chromosome." [SO:ke]	2930241	\N	\N	sequence	4	SO	variant_genome	intrachromosomal_mutation
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000028	"A chromosomal structure variation within a single chromosome." [SO:ke]	4003225	\N	\N	sequence	5	SO	genome	intrachromosomal_mutation
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000028	"A chromosomal structure variation within a single chromosome." [SO:ke]	4967337	\N	\N	sequence	6	SO	sequence_collection	intrachromosomal_mutation
SO:1000029	\N	\N	"An incomplete chromosome." [SO:ke]	SO:1000029	"An incomplete chromosome." [SO:ke]	47109	\N	\N	sequence	0	SO	chromosomal_deletion	chromosomal_deletion
SO:1000028	SO:1000029	\N	"A chromosomal structure variation within a single chromosome." [SO:ke]	SO:1000029	"An incomplete chromosome." [SO:ke]	491929	\N	\N	sequence	1	SO	intrachromosomal_mutation	chromosomal_deletion
SO:1000183	SO:1000028	\N	"" []	SO:1000029	"An incomplete chromosome." [SO:ke]	1074626	\N	\N	sequence	2	SO	chromosome_structure_variation	chromosomal_deletion
SO:0000240	SO:1000183	\N	"" []	SO:1000029	"An incomplete chromosome." [SO:ke]	1905807	\N	\N	sequence	3	SO	chromosome_variation	chromosomal_deletion
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000029	"An incomplete chromosome." [SO:ke]	2930242	\N	\N	sequence	4	SO	variant_collection	chromosomal_deletion
SO:0001524	SO:0000240	\N	"" []	SO:1000029	"An incomplete chromosome." [SO:ke]	2930243	\N	\N	sequence	4	SO	chromosomally_aberrant_genome	chromosomal_deletion
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000029	"An incomplete chromosome." [SO:ke]	4003226	\N	\N	sequence	5	SO	sequence_collection	chromosomal_deletion
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000029	"An incomplete chromosome." [SO:ke]	4003227	\N	\N	sequence	5	SO	variant_genome	chromosomal_deletion
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000029	"An incomplete chromosome." [SO:ke]	4967338	\N	\N	sequence	6	SO	genome	chromosomal_deletion
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000029	"An incomplete chromosome." [SO:ke]	5741763	\N	\N	sequence	7	SO	sequence_collection	chromosomal_deletion
SO:1000030	\N	\N	"An interchromosomal mutation where a region of the chromosome is inverted with respect to wild type." [SO:ke]	SO:1000030	"An interchromosomal mutation where a region of the chromosome is inverted with respect to wild type." [SO:ke]	47110	\N	\N	sequence	0	SO	chromosomal_inversion	chromosomal_inversion
SO:1000028	SO:1000030	\N	"A chromosomal structure variation within a single chromosome." [SO:ke]	SO:1000030	"An interchromosomal mutation where a region of the chromosome is inverted with respect to wild type." [SO:ke]	491930	\N	\N	sequence	1	SO	intrachromosomal_mutation	chromosomal_inversion
SO:1000183	SO:1000028	\N	"" []	SO:1000030	"An interchromosomal mutation where a region of the chromosome is inverted with respect to wild type." [SO:ke]	1074627	\N	\N	sequence	2	SO	chromosome_structure_variation	chromosomal_inversion
SO:0000240	SO:1000183	\N	"" []	SO:1000030	"An interchromosomal mutation where a region of the chromosome is inverted with respect to wild type." [SO:ke]	1905808	\N	\N	sequence	3	SO	chromosome_variation	chromosomal_inversion
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000030	"An interchromosomal mutation where a region of the chromosome is inverted with respect to wild type." [SO:ke]	2930244	\N	\N	sequence	4	SO	variant_collection	chromosomal_inversion
SO:0001524	SO:0000240	\N	"" []	SO:1000030	"An interchromosomal mutation where a region of the chromosome is inverted with respect to wild type." [SO:ke]	2930245	\N	\N	sequence	4	SO	chromosomally_aberrant_genome	chromosomal_inversion
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000030	"An interchromosomal mutation where a region of the chromosome is inverted with respect to wild type." [SO:ke]	4003228	\N	\N	sequence	5	SO	sequence_collection	chromosomal_inversion
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000030	"An interchromosomal mutation where a region of the chromosome is inverted with respect to wild type." [SO:ke]	4003229	\N	\N	sequence	5	SO	variant_genome	chromosomal_inversion
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000030	"An interchromosomal mutation where a region of the chromosome is inverted with respect to wild type." [SO:ke]	4967339	\N	\N	sequence	6	SO	genome	chromosomal_inversion
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000030	"An interchromosomal mutation where a region of the chromosome is inverted with respect to wild type." [SO:ke]	5741764	\N	\N	sequence	7	SO	sequence_collection	chromosomal_inversion
SO:1000031	\N	\N	"A chromosomal structure variation whereby more than one chromosome is involved." [SO:ke]	SO:1000031	"A chromosomal structure variation whereby more than one chromosome is involved." [SO:ke]	47111	\N	\N	sequence	0	SO	interchromosomal_mutation	interchromosomal_mutation
SO:1000183	SO:1000031	\N	"" []	SO:1000031	"A chromosomal structure variation whereby more than one chromosome is involved." [SO:ke]	491931	\N	\N	sequence	1	SO	chromosome_structure_variation	interchromosomal_mutation
SO:0000240	SO:1000183	\N	"" []	SO:1000031	"A chromosomal structure variation whereby more than one chromosome is involved." [SO:ke]	1074628	\N	\N	sequence	2	SO	chromosome_variation	interchromosomal_mutation
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000031	"A chromosomal structure variation whereby more than one chromosome is involved." [SO:ke]	1905809	\N	\N	sequence	3	SO	variant_collection	interchromosomal_mutation
SO:0001524	SO:0000240	\N	"" []	SO:1000031	"A chromosomal structure variation whereby more than one chromosome is involved." [SO:ke]	1905810	\N	\N	sequence	3	SO	chromosomally_aberrant_genome	interchromosomal_mutation
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000031	"A chromosomal structure variation whereby more than one chromosome is involved." [SO:ke]	2930246	\N	\N	sequence	4	SO	sequence_collection	interchromosomal_mutation
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000031	"A chromosomal structure variation whereby more than one chromosome is involved." [SO:ke]	2930247	\N	\N	sequence	4	SO	variant_genome	interchromosomal_mutation
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000031	"A chromosomal structure variation whereby more than one chromosome is involved." [SO:ke]	4003230	\N	\N	sequence	5	SO	genome	interchromosomal_mutation
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000031	"A chromosomal structure variation whereby more than one chromosome is involved." [SO:ke]	4967340	\N	\N	sequence	6	SO	sequence_collection	interchromosomal_mutation
SO:1000032	\N	\N	"A sequence alteration which included an insertion and a deletion, affecting 2 or more bases." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html, http:http\\://www.hgvs.org/mutnomen/recs-DNA.html#indel]	SO:1000032	"A sequence alteration which included an insertion and a deletion, affecting 2 or more bases." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html, http:http\\://www.hgvs.org/mutnomen/recs-DNA.html#indel]	47112	\N	\N	sequence	0	SO	indel	indel
SO:0001059	SO:1000032	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000032	"A sequence alteration which included an insertion and a deletion, affecting 2 or more bases." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html, http:http\\://www.hgvs.org/mutnomen/recs-DNA.html#indel]	491932	\N	SOFA	sequence	1	SO	sequence_alteration	indel
SO:0002072	SO:0001059	\N	"" []	SO:1000032	"A sequence alteration which included an insertion and a deletion, affecting 2 or more bases." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html, http:http\\://www.hgvs.org/mutnomen/recs-DNA.html#indel]	1074629	SOFA	\N	sequence	2	SO	sequence_comparison	indel
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000032	"A sequence alteration which included an insertion and a deletion, affecting 2 or more bases." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html, http:http\\://www.hgvs.org/mutnomen/recs-DNA.html#indel]	1905811	\N	SOFA	sequence	3	SO	sequence_feature	indel
SO:1000035	\N	\N	"An insertion which derives from, or is identical in sequence to, nucleotides present at a known location in the genome." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html, NCBI:th]	SO:1000035	"An insertion which derives from, or is identical in sequence to, nucleotides present at a known location in the genome." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html, NCBI:th]	47113	\N	\N	sequence	0	SO	duplication	duplication
SO:0000667	SO:1000035	\N	"The sequence of one or more nucleotides added between two adjacent nucleotides in the sequence." [SO:ke]	SO:1000035	"An insertion which derives from, or is identical in sequence to, nucleotides present at a known location in the genome." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html, NCBI:th]	491933	\N	DBVAR,SOFA	sequence	1	SO	insertion	duplication
SO:0001059	SO:0000667	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000035	"An insertion which derives from, or is identical in sequence to, nucleotides present at a known location in the genome." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html, NCBI:th]	1074630	DBVAR,SOFA	SOFA	sequence	2	SO	sequence_alteration	duplication
SO:0001411	SO:0000667	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1000035	"An insertion which derives from, or is identical in sequence to, nucleotides present at a known location in the genome." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html, NCBI:th]	1074631	DBVAR,SOFA	SOFA	sequence	2	SO	biological_region	duplication
SO:0002072	SO:0001059	\N	"" []	SO:1000035	"An insertion which derives from, or is identical in sequence to, nucleotides present at a known location in the genome." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html, NCBI:th]	1905812	SOFA	\N	sequence	3	SO	sequence_comparison	duplication
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1000035	"An insertion which derives from, or is identical in sequence to, nucleotides present at a known location in the genome." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html, NCBI:th]	1905813	SOFA	SOFA	sequence	3	SO	region	duplication
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000035	"An insertion which derives from, or is identical in sequence to, nucleotides present at a known location in the genome." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html, NCBI:th]	2930248	\N	SOFA	sequence	4	SO	sequence_feature	duplication
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000035	"An insertion which derives from, or is identical in sequence to, nucleotides present at a known location in the genome." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html, NCBI:th]	2930249	SOFA	SOFA	sequence	4	SO	sequence_feature	duplication
SO:1000036	\N	DBVAR,SOFA	"A continuous nucleotide sequence is inverted in the same position." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	SO:1000036	"A continuous nucleotide sequence is inverted in the same position." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	47114	\N	DBVAR,SOFA	sequence	0	SO	inversion	inversion
SO:0001059	SO:1000036	DBVAR,SOFA	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000036	"A continuous nucleotide sequence is inverted in the same position." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	491934	DBVAR,SOFA	SOFA	sequence	1	SO	sequence_alteration	inversion
SO:0001411	SO:1000036	DBVAR,SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1000036	"A continuous nucleotide sequence is inverted in the same position." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	491935	DBVAR,SOFA	SOFA	sequence	1	SO	biological_region	inversion
SO:0002072	SO:0001059	DBVAR,SOFA	"" []	SO:1000036	"A continuous nucleotide sequence is inverted in the same position." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	1074632	SOFA	\N	sequence	2	SO	sequence_comparison	inversion
SO:0000001	SO:0001411	DBVAR,SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1000036	"A continuous nucleotide sequence is inverted in the same position." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	1074633	SOFA	SOFA	sequence	2	SO	region	inversion
SO:0000110	SO:0002072	DBVAR,SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000036	"A continuous nucleotide sequence is inverted in the same position." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	1905814	\N	SOFA	sequence	3	SO	sequence_feature	inversion
SO:0000110	SO:0000001	DBVAR,SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000036	"A continuous nucleotide sequence is inverted in the same position." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html]	1905815	SOFA	SOFA	sequence	3	SO	sequence_feature	inversion
SO:1000037	\N	\N	"An extra chromosome." [SO:ke]	SO:1000037	"An extra chromosome." [SO:ke]	47115	\N	\N	sequence	0	SO	chromosomal_duplication	chromosomal_duplication
SO:1000183	SO:1000037	\N	"" []	SO:1000037	"An extra chromosome." [SO:ke]	491936	\N	\N	sequence	1	SO	chromosome_structure_variation	chromosomal_duplication
SO:0000240	SO:1000183	\N	"" []	SO:1000037	"An extra chromosome." [SO:ke]	1074634	\N	\N	sequence	2	SO	chromosome_variation	chromosomal_duplication
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000037	"An extra chromosome." [SO:ke]	1905816	\N	\N	sequence	3	SO	variant_collection	chromosomal_duplication
SO:0001524	SO:0000240	\N	"" []	SO:1000037	"An extra chromosome." [SO:ke]	1905817	\N	\N	sequence	3	SO	chromosomally_aberrant_genome	chromosomal_duplication
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000037	"An extra chromosome." [SO:ke]	2930250	\N	\N	sequence	4	SO	sequence_collection	chromosomal_duplication
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000037	"An extra chromosome." [SO:ke]	2930251	\N	\N	sequence	4	SO	variant_genome	chromosomal_duplication
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000037	"An extra chromosome." [SO:ke]	4003231	\N	\N	sequence	5	SO	genome	chromosomal_duplication
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000037	"An extra chromosome." [SO:ke]	4967341	\N	\N	sequence	6	SO	sequence_collection	chromosomal_duplication
SO:1000038	\N	\N	"A duplication that occurred within a chromosome." [SO:ke]	SO:1000038	"A duplication that occurred within a chromosome." [SO:ke]	47116	\N	\N	sequence	0	SO	intrachromosomal_duplication	intrachromosomal_duplication
SO:1000028	SO:1000038	\N	"A chromosomal structure variation within a single chromosome." [SO:ke]	SO:1000038	"A duplication that occurred within a chromosome." [SO:ke]	491937	\N	\N	sequence	1	SO	intrachromosomal_mutation	intrachromosomal_duplication
SO:1000037	SO:1000038	\N	"An extra chromosome." [SO:ke]	SO:1000038	"A duplication that occurred within a chromosome." [SO:ke]	491938	\N	\N	sequence	1	SO	chromosomal_duplication	intrachromosomal_duplication
SO:1000183	SO:1000028	\N	"" []	SO:1000038	"A duplication that occurred within a chromosome." [SO:ke]	1074635	\N	\N	sequence	2	SO	chromosome_structure_variation	intrachromosomal_duplication
SO:1000183	SO:1000037	\N	"" []	SO:1000038	"A duplication that occurred within a chromosome." [SO:ke]	1074636	\N	\N	sequence	2	SO	chromosome_structure_variation	intrachromosomal_duplication
SO:0000240	SO:1000183	\N	"" []	SO:1000038	"A duplication that occurred within a chromosome." [SO:ke]	1905818	\N	\N	sequence	3	SO	chromosome_variation	intrachromosomal_duplication
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000038	"A duplication that occurred within a chromosome." [SO:ke]	2930252	\N	\N	sequence	4	SO	variant_collection	intrachromosomal_duplication
SO:0001524	SO:0000240	\N	"" []	SO:1000038	"A duplication that occurred within a chromosome." [SO:ke]	2930253	\N	\N	sequence	4	SO	chromosomally_aberrant_genome	intrachromosomal_duplication
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000038	"A duplication that occurred within a chromosome." [SO:ke]	4003232	\N	\N	sequence	5	SO	sequence_collection	intrachromosomal_duplication
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000038	"A duplication that occurred within a chromosome." [SO:ke]	4003233	\N	\N	sequence	5	SO	variant_genome	intrachromosomal_duplication
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000038	"A duplication that occurred within a chromosome." [SO:ke]	4967342	\N	\N	sequence	6	SO	genome	intrachromosomal_duplication
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000038	"A duplication that occurred within a chromosome." [SO:ke]	5741765	\N	\N	sequence	7	SO	sequence_collection	intrachromosomal_duplication
SO:1000039	\N	\N	"A tandem duplication where the individual regions are in the same orientation." [SO:ke]	SO:1000039	"A tandem duplication where the individual regions are in the same orientation." [SO:ke]	47117	\N	\N	sequence	0	SO	direct_tandem_duplication	direct_tandem_duplication
SO:1000173	SO:1000039	\N	"A duplication consisting of 2 identical adjacent regions." [SO:ke]	SO:1000039	"A tandem duplication where the individual regions are in the same orientation." [SO:ke]	491939	\N	DBVAR	sequence	1	SO	tandem_duplication	direct_tandem_duplication
SO:1000035	SO:1000173	\N	"An insertion which derives from, or is identical in sequence to, nucleotides present at a known location in the genome." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html, NCBI:th]	SO:1000039	"A tandem duplication where the individual regions are in the same orientation." [SO:ke]	1074637	DBVAR	\N	sequence	2	SO	duplication	direct_tandem_duplication
SO:0000667	SO:1000035	\N	"The sequence of one or more nucleotides added between two adjacent nucleotides in the sequence." [SO:ke]	SO:1000039	"A tandem duplication where the individual regions are in the same orientation." [SO:ke]	1905819	\N	DBVAR,SOFA	sequence	3	SO	insertion	direct_tandem_duplication
SO:0001059	SO:0000667	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000039	"A tandem duplication where the individual regions are in the same orientation." [SO:ke]	2930254	DBVAR,SOFA	SOFA	sequence	4	SO	sequence_alteration	direct_tandem_duplication
SO:0001411	SO:0000667	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1000039	"A tandem duplication where the individual regions are in the same orientation." [SO:ke]	2930255	DBVAR,SOFA	SOFA	sequence	4	SO	biological_region	direct_tandem_duplication
SO:0002072	SO:0001059	\N	"" []	SO:1000039	"A tandem duplication where the individual regions are in the same orientation." [SO:ke]	4003234	SOFA	\N	sequence	5	SO	sequence_comparison	direct_tandem_duplication
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1000039	"A tandem duplication where the individual regions are in the same orientation." [SO:ke]	4003235	SOFA	SOFA	sequence	5	SO	region	direct_tandem_duplication
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000039	"A tandem duplication where the individual regions are in the same orientation." [SO:ke]	4967343	\N	SOFA	sequence	6	SO	sequence_feature	direct_tandem_duplication
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000039	"A tandem duplication where the individual regions are in the same orientation." [SO:ke]	4967344	SOFA	SOFA	sequence	6	SO	sequence_feature	direct_tandem_duplication
SO:1000040	\N	\N	"A tandem duplication where the individual regions are not in the same orientation." [SO:ke]	SO:1000040	"A tandem duplication where the individual regions are not in the same orientation." [SO:ke]	47118	\N	\N	sequence	0	SO	inverted_tandem_duplication	inverted_tandem_duplication
SO:1000173	SO:1000040	\N	"A duplication consisting of 2 identical adjacent regions." [SO:ke]	SO:1000040	"A tandem duplication where the individual regions are not in the same orientation." [SO:ke]	491940	\N	DBVAR	sequence	1	SO	tandem_duplication	inverted_tandem_duplication
SO:1000035	SO:1000173	\N	"An insertion which derives from, or is identical in sequence to, nucleotides present at a known location in the genome." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html, NCBI:th]	SO:1000040	"A tandem duplication where the individual regions are not in the same orientation." [SO:ke]	1074638	DBVAR	\N	sequence	2	SO	duplication	inverted_tandem_duplication
SO:0000667	SO:1000035	\N	"The sequence of one or more nucleotides added between two adjacent nucleotides in the sequence." [SO:ke]	SO:1000040	"A tandem duplication where the individual regions are not in the same orientation." [SO:ke]	1905820	\N	DBVAR,SOFA	sequence	3	SO	insertion	inverted_tandem_duplication
SO:0001059	SO:0000667	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000040	"A tandem duplication where the individual regions are not in the same orientation." [SO:ke]	2930256	DBVAR,SOFA	SOFA	sequence	4	SO	sequence_alteration	inverted_tandem_duplication
SO:0001411	SO:0000667	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1000040	"A tandem duplication where the individual regions are not in the same orientation." [SO:ke]	2930257	DBVAR,SOFA	SOFA	sequence	4	SO	biological_region	inverted_tandem_duplication
SO:0002072	SO:0001059	\N	"" []	SO:1000040	"A tandem duplication where the individual regions are not in the same orientation." [SO:ke]	4003236	SOFA	\N	sequence	5	SO	sequence_comparison	inverted_tandem_duplication
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1000040	"A tandem duplication where the individual regions are not in the same orientation." [SO:ke]	4003237	SOFA	SOFA	sequence	5	SO	region	inverted_tandem_duplication
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000040	"A tandem duplication where the individual regions are not in the same orientation." [SO:ke]	4967345	\N	SOFA	sequence	6	SO	sequence_feature	inverted_tandem_duplication
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000040	"A tandem duplication where the individual regions are not in the same orientation." [SO:ke]	4967346	SOFA	SOFA	sequence	6	SO	sequence_feature	inverted_tandem_duplication
SO:1000041	\N	\N	"A chromosome structure variation whereby a transposition occurred within a chromosome." [SO:ke]	SO:1000041	"A chromosome structure variation whereby a transposition occurred within a chromosome." [SO:ke]	47119	\N	\N	sequence	0	SO	intrachromosomal_transposition	intrachromosomal_transposition
SO:0000453	SO:1000041	\N	"A chromosome structure variant whereby a region of a chromosome has been transferred to another position. Among interchromosomal rearrangements, the term transposition is reserved for that class in which the telomeres of the chromosomes involved are coupled (that is to say, form the two ends of a single DNA molecule) as in wild-type." [FB:reference_manual, SO:ke]	SO:1000041	"A chromosome structure variation whereby a transposition occurred within a chromosome." [SO:ke]	491941	\N	\N	sequence	1	SO	chromosomal_transposition	intrachromosomal_transposition
SO:1000038	SO:1000041	\N	"A duplication that occurred within a chromosome." [SO:ke]	SO:1000041	"A chromosome structure variation whereby a transposition occurred within a chromosome." [SO:ke]	491942	\N	\N	sequence	1	SO	intrachromosomal_duplication	intrachromosomal_transposition
SO:1000183	SO:0000453	\N	"" []	SO:1000041	"A chromosome structure variation whereby a transposition occurred within a chromosome." [SO:ke]	1074639	\N	\N	sequence	2	SO	chromosome_structure_variation	intrachromosomal_transposition
SO:1000028	SO:1000038	\N	"A chromosomal structure variation within a single chromosome." [SO:ke]	SO:1000041	"A chromosome structure variation whereby a transposition occurred within a chromosome." [SO:ke]	1074640	\N	\N	sequence	2	SO	intrachromosomal_mutation	intrachromosomal_transposition
SO:1000037	SO:1000038	\N	"An extra chromosome." [SO:ke]	SO:1000041	"A chromosome structure variation whereby a transposition occurred within a chromosome." [SO:ke]	1074641	\N	\N	sequence	2	SO	chromosomal_duplication	intrachromosomal_transposition
SO:0000240	SO:1000183	\N	"" []	SO:1000041	"A chromosome structure variation whereby a transposition occurred within a chromosome." [SO:ke]	2930260	\N	\N	sequence	4	SO	chromosome_variation	intrachromosomal_transposition
SO:1000183	SO:1000028	\N	"" []	SO:1000041	"A chromosome structure variation whereby a transposition occurred within a chromosome." [SO:ke]	1905822	\N	\N	sequence	3	SO	chromosome_structure_variation	intrachromosomal_transposition
SO:1000183	SO:1000037	\N	"" []	SO:1000041	"A chromosome structure variation whereby a transposition occurred within a chromosome." [SO:ke]	1905823	\N	\N	sequence	3	SO	chromosome_structure_variation	intrachromosomal_transposition
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000041	"A chromosome structure variation whereby a transposition occurred within a chromosome." [SO:ke]	3174046	\N	\N	sequence	5	SO	variant_collection	intrachromosomal_transposition
SO:0001524	SO:0000240	\N	"" []	SO:1000041	"A chromosome structure variation whereby a transposition occurred within a chromosome." [SO:ke]	3174047	\N	\N	sequence	5	SO	chromosomally_aberrant_genome	intrachromosomal_transposition
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000041	"A chromosome structure variation whereby a transposition occurred within a chromosome." [SO:ke]	4385901	\N	\N	sequence	6	SO	sequence_collection	intrachromosomal_transposition
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000041	"A chromosome structure variation whereby a transposition occurred within a chromosome." [SO:ke]	4385902	\N	\N	sequence	6	SO	variant_genome	intrachromosomal_transposition
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000041	"A chromosome structure variation whereby a transposition occurred within a chromosome." [SO:ke]	5407520	\N	\N	sequence	7	SO	genome	intrachromosomal_transposition
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000041	"A chromosome structure variation whereby a transposition occurred within a chromosome." [SO:ke]	6146700	\N	\N	sequence	8	SO	sequence_collection	intrachromosomal_transposition
SO:1000042	\N	\N	"A chromosome structure variant where a monocentric element is caused by the fusion of two chromosome arms." [SO:ke]	SO:1000042	"A chromosome structure variant where a monocentric element is caused by the fusion of two chromosome arms." [SO:ke]	47120	\N	\N	sequence	0	SO	compound_chromosome	compound_chromosome
SO:1000183	SO:1000042	\N	"" []	SO:1000042	"A chromosome structure variant where a monocentric element is caused by the fusion of two chromosome arms." [SO:ke]	491943	\N	\N	sequence	1	SO	chromosome_structure_variation	compound_chromosome
SO:0000240	SO:1000183	\N	"" []	SO:1000042	"A chromosome structure variant where a monocentric element is caused by the fusion of two chromosome arms." [SO:ke]	1074642	\N	\N	sequence	2	SO	chromosome_variation	compound_chromosome
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000042	"A chromosome structure variant where a monocentric element is caused by the fusion of two chromosome arms." [SO:ke]	1905824	\N	\N	sequence	3	SO	variant_collection	compound_chromosome
SO:0001524	SO:0000240	\N	"" []	SO:1000042	"A chromosome structure variant where a monocentric element is caused by the fusion of two chromosome arms." [SO:ke]	1905825	\N	\N	sequence	3	SO	chromosomally_aberrant_genome	compound_chromosome
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000042	"A chromosome structure variant where a monocentric element is caused by the fusion of two chromosome arms." [SO:ke]	2930261	\N	\N	sequence	4	SO	sequence_collection	compound_chromosome
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000042	"A chromosome structure variant where a monocentric element is caused by the fusion of two chromosome arms." [SO:ke]	2930262	\N	\N	sequence	4	SO	variant_genome	compound_chromosome
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000042	"A chromosome structure variant where a monocentric element is caused by the fusion of two chromosome arms." [SO:ke]	4003240	\N	\N	sequence	5	SO	genome	compound_chromosome
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000042	"A chromosome structure variant where a monocentric element is caused by the fusion of two chromosome arms." [SO:ke]	4967348	\N	\N	sequence	6	SO	sequence_collection	compound_chromosome
SO:1000043	\N	\N	"A non reciprocal translocation whereby the participating chromosomes break at their centromeres and the long arms fuse to form a single chromosome with a single centromere." [http://en.wikipedia.org/wiki/Robertsonian_translocation]	SO:1000043	"A non reciprocal translocation whereby the participating chromosomes break at their centromeres and the long arms fuse to form a single chromosome with a single centromere." [http://en.wikipedia.org/wiki/Robertsonian_translocation]	47121	\N	\N	sequence	0	SO	Robertsonian_fusion	Robertsonian_fusion
SO:1000044	SO:1000043	\N	"A chromosomal mutation. Rearrangements that alter the pairing of telomeres are classified as translocations." [FB:reference_manual]	SO:1000043	"A non reciprocal translocation whereby the participating chromosomes break at their centromeres and the long arms fuse to form a single chromosome with a single centromere." [http://en.wikipedia.org/wiki/Robertsonian_translocation]	491944	\N	\N	sequence	1	SO	chromosomal_translocation	Robertsonian_fusion
SO:0000199	SO:1000044	\N	"A region of nucleotide sequence that has translocated to a new position. The observed adjacency of two previously separated regions." [NCBI:th, SO:ke]	SO:1000043	"A non reciprocal translocation whereby the participating chromosomes break at their centromeres and the long arms fuse to form a single chromosome with a single centromere." [http://en.wikipedia.org/wiki/Robertsonian_translocation]	1074643	\N	DBVAR	sequence	2	SO	translocation	Robertsonian_fusion
SO:1000031	SO:1000044	\N	"A chromosomal structure variation whereby more than one chromosome is involved." [SO:ke]	SO:1000043	"A non reciprocal translocation whereby the participating chromosomes break at their centromeres and the long arms fuse to form a single chromosome with a single centromere." [http://en.wikipedia.org/wiki/Robertsonian_translocation]	1074644	\N	\N	sequence	2	SO	interchromosomal_mutation	Robertsonian_fusion
SO:0001785	SO:0000199	\N	"" []	SO:1000043	"A non reciprocal translocation whereby the participating chromosomes break at their centromeres and the long arms fuse to form a single chromosome with a single centromere." [http://en.wikipedia.org/wiki/Robertsonian_translocation]	1905826	DBVAR	DBVAR	sequence	3	SO	structural_alteration	Robertsonian_fusion
SO:1000183	SO:1000031	\N	"" []	SO:1000043	"A non reciprocal translocation whereby the participating chromosomes break at their centromeres and the long arms fuse to form a single chromosome with a single centromere." [http://en.wikipedia.org/wiki/Robertsonian_translocation]	1905827	\N	\N	sequence	3	SO	chromosome_structure_variation	Robertsonian_fusion
SO:0001059	SO:0001785	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000043	"A non reciprocal translocation whereby the participating chromosomes break at their centromeres and the long arms fuse to form a single chromosome with a single centromere." [http://en.wikipedia.org/wiki/Robertsonian_translocation]	2930263	DBVAR	SOFA	sequence	4	SO	sequence_alteration	Robertsonian_fusion
SO:0000240	SO:1000183	\N	"" []	SO:1000043	"A non reciprocal translocation whereby the participating chromosomes break at their centromeres and the long arms fuse to form a single chromosome with a single centromere." [http://en.wikipedia.org/wiki/Robertsonian_translocation]	2930264	\N	\N	sequence	4	SO	chromosome_variation	Robertsonian_fusion
SO:0002072	SO:0001059	\N	"" []	SO:1000043	"A non reciprocal translocation whereby the participating chromosomes break at their centromeres and the long arms fuse to form a single chromosome with a single centromere." [http://en.wikipedia.org/wiki/Robertsonian_translocation]	4003241	SOFA	\N	sequence	5	SO	sequence_comparison	Robertsonian_fusion
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000043	"A non reciprocal translocation whereby the participating chromosomes break at their centromeres and the long arms fuse to form a single chromosome with a single centromere." [http://en.wikipedia.org/wiki/Robertsonian_translocation]	4003242	\N	\N	sequence	5	SO	variant_collection	Robertsonian_fusion
SO:0001524	SO:0000240	\N	"" []	SO:1000043	"A non reciprocal translocation whereby the participating chromosomes break at their centromeres and the long arms fuse to form a single chromosome with a single centromere." [http://en.wikipedia.org/wiki/Robertsonian_translocation]	4003243	\N	\N	sequence	5	SO	chromosomally_aberrant_genome	Robertsonian_fusion
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000043	"A non reciprocal translocation whereby the participating chromosomes break at their centromeres and the long arms fuse to form a single chromosome with a single centromere." [http://en.wikipedia.org/wiki/Robertsonian_translocation]	4967349	\N	SOFA	sequence	6	SO	sequence_feature	Robertsonian_fusion
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000043	"A non reciprocal translocation whereby the participating chromosomes break at their centromeres and the long arms fuse to form a single chromosome with a single centromere." [http://en.wikipedia.org/wiki/Robertsonian_translocation]	4967350	\N	\N	sequence	6	SO	sequence_collection	Robertsonian_fusion
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000043	"A non reciprocal translocation whereby the participating chromosomes break at their centromeres and the long arms fuse to form a single chromosome with a single centromere." [http://en.wikipedia.org/wiki/Robertsonian_translocation]	4967351	\N	\N	sequence	6	SO	variant_genome	Robertsonian_fusion
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000043	"A non reciprocal translocation whereby the participating chromosomes break at their centromeres and the long arms fuse to form a single chromosome with a single centromere." [http://en.wikipedia.org/wiki/Robertsonian_translocation]	5741767	\N	\N	sequence	7	SO	genome	Robertsonian_fusion
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000043	"A non reciprocal translocation whereby the participating chromosomes break at their centromeres and the long arms fuse to form a single chromosome with a single centromere." [http://en.wikipedia.org/wiki/Robertsonian_translocation]	6311364	\N	\N	sequence	8	SO	sequence_collection	Robertsonian_fusion
SO:1000044	\N	\N	"A chromosomal mutation. Rearrangements that alter the pairing of telomeres are classified as translocations." [FB:reference_manual]	SO:1000044	"A chromosomal mutation. Rearrangements that alter the pairing of telomeres are classified as translocations." [FB:reference_manual]	47122	\N	\N	sequence	0	SO	chromosomal_translocation	chromosomal_translocation
SO:0000199	SO:1000044	\N	"A region of nucleotide sequence that has translocated to a new position. The observed adjacency of two previously separated regions." [NCBI:th, SO:ke]	SO:1000044	"A chromosomal mutation. Rearrangements that alter the pairing of telomeres are classified as translocations." [FB:reference_manual]	491945	\N	DBVAR	sequence	1	SO	translocation	chromosomal_translocation
SO:1000031	SO:1000044	\N	"A chromosomal structure variation whereby more than one chromosome is involved." [SO:ke]	SO:1000044	"A chromosomal mutation. Rearrangements that alter the pairing of telomeres are classified as translocations." [FB:reference_manual]	491946	\N	\N	sequence	1	SO	interchromosomal_mutation	chromosomal_translocation
SO:0001785	SO:0000199	\N	"" []	SO:1000044	"A chromosomal mutation. Rearrangements that alter the pairing of telomeres are classified as translocations." [FB:reference_manual]	1074645	DBVAR	DBVAR	sequence	2	SO	structural_alteration	chromosomal_translocation
SO:1000183	SO:1000031	\N	"" []	SO:1000044	"A chromosomal mutation. Rearrangements that alter the pairing of telomeres are classified as translocations." [FB:reference_manual]	1074646	\N	\N	sequence	2	SO	chromosome_structure_variation	chromosomal_translocation
SO:0001059	SO:0001785	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000044	"A chromosomal mutation. Rearrangements that alter the pairing of telomeres are classified as translocations." [FB:reference_manual]	1905828	DBVAR	SOFA	sequence	3	SO	sequence_alteration	chromosomal_translocation
SO:0000240	SO:1000183	\N	"" []	SO:1000044	"A chromosomal mutation. Rearrangements that alter the pairing of telomeres are classified as translocations." [FB:reference_manual]	1905829	\N	\N	sequence	3	SO	chromosome_variation	chromosomal_translocation
SO:0002072	SO:0001059	\N	"" []	SO:1000044	"A chromosomal mutation. Rearrangements that alter the pairing of telomeres are classified as translocations." [FB:reference_manual]	2930265	SOFA	\N	sequence	4	SO	sequence_comparison	chromosomal_translocation
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000044	"A chromosomal mutation. Rearrangements that alter the pairing of telomeres are classified as translocations." [FB:reference_manual]	2930266	\N	\N	sequence	4	SO	variant_collection	chromosomal_translocation
SO:0001524	SO:0000240	\N	"" []	SO:1000044	"A chromosomal mutation. Rearrangements that alter the pairing of telomeres are classified as translocations." [FB:reference_manual]	2930267	\N	\N	sequence	4	SO	chromosomally_aberrant_genome	chromosomal_translocation
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000044	"A chromosomal mutation. Rearrangements that alter the pairing of telomeres are classified as translocations." [FB:reference_manual]	4003244	\N	SOFA	sequence	5	SO	sequence_feature	chromosomal_translocation
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000044	"A chromosomal mutation. Rearrangements that alter the pairing of telomeres are classified as translocations." [FB:reference_manual]	4003245	\N	\N	sequence	5	SO	sequence_collection	chromosomal_translocation
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000044	"A chromosomal mutation. Rearrangements that alter the pairing of telomeres are classified as translocations." [FB:reference_manual]	4003246	\N	\N	sequence	5	SO	variant_genome	chromosomal_translocation
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000044	"A chromosomal mutation. Rearrangements that alter the pairing of telomeres are classified as translocations." [FB:reference_manual]	4967352	\N	\N	sequence	6	SO	genome	chromosomal_translocation
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000044	"A chromosomal mutation. Rearrangements that alter the pairing of telomeres are classified as translocations." [FB:reference_manual]	5741768	\N	\N	sequence	7	SO	sequence_collection	chromosomal_translocation
SO:1000045	\N	\N	"A ring chromosome is a chromosome whose arms have fused together to form a ring, often with the loss of the ends of the chromosome." [http://en.wikipedia.org/wiki/Ring_chromosome]	SO:1000045	"A ring chromosome is a chromosome whose arms have fused together to form a ring, often with the loss of the ends of the chromosome." [http://en.wikipedia.org/wiki/Ring_chromosome]	47123	\N	\N	sequence	0	SO	ring_chromosome	ring_chromosome
SO:1000028	SO:1000045	\N	"A chromosomal structure variation within a single chromosome." [SO:ke]	SO:1000045	"A ring chromosome is a chromosome whose arms have fused together to form a ring, often with the loss of the ends of the chromosome." [http://en.wikipedia.org/wiki/Ring_chromosome]	491947	\N	\N	sequence	1	SO	intrachromosomal_mutation	ring_chromosome
SO:1000183	SO:1000028	\N	"" []	SO:1000045	"A ring chromosome is a chromosome whose arms have fused together to form a ring, often with the loss of the ends of the chromosome." [http://en.wikipedia.org/wiki/Ring_chromosome]	1074647	\N	\N	sequence	2	SO	chromosome_structure_variation	ring_chromosome
SO:0000240	SO:1000183	\N	"" []	SO:1000045	"A ring chromosome is a chromosome whose arms have fused together to form a ring, often with the loss of the ends of the chromosome." [http://en.wikipedia.org/wiki/Ring_chromosome]	1905830	\N	\N	sequence	3	SO	chromosome_variation	ring_chromosome
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000045	"A ring chromosome is a chromosome whose arms have fused together to form a ring, often with the loss of the ends of the chromosome." [http://en.wikipedia.org/wiki/Ring_chromosome]	2930268	\N	\N	sequence	4	SO	variant_collection	ring_chromosome
SO:0001524	SO:0000240	\N	"" []	SO:1000045	"A ring chromosome is a chromosome whose arms have fused together to form a ring, often with the loss of the ends of the chromosome." [http://en.wikipedia.org/wiki/Ring_chromosome]	2930269	\N	\N	sequence	4	SO	chromosomally_aberrant_genome	ring_chromosome
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000045	"A ring chromosome is a chromosome whose arms have fused together to form a ring, often with the loss of the ends of the chromosome." [http://en.wikipedia.org/wiki/Ring_chromosome]	4003247	\N	\N	sequence	5	SO	sequence_collection	ring_chromosome
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000045	"A ring chromosome is a chromosome whose arms have fused together to form a ring, often with the loss of the ends of the chromosome." [http://en.wikipedia.org/wiki/Ring_chromosome]	4003248	\N	\N	sequence	5	SO	variant_genome	ring_chromosome
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000045	"A ring chromosome is a chromosome whose arms have fused together to form a ring, often with the loss of the ends of the chromosome." [http://en.wikipedia.org/wiki/Ring_chromosome]	4967353	\N	\N	sequence	6	SO	genome	ring_chromosome
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000045	"A ring chromosome is a chromosome whose arms have fused together to form a ring, often with the loss of the ends of the chromosome." [http://en.wikipedia.org/wiki/Ring_chromosome]	5741769	\N	\N	sequence	7	SO	sequence_collection	ring_chromosome
SO:1000046	\N	\N	"A chromosomal inversion that includes the centromere." [FB:reference_manual]	SO:1000046	"A chromosomal inversion that includes the centromere." [FB:reference_manual]	47124	\N	\N	sequence	0	SO	pericentric_inversion	pericentric_inversion
SO:1000030	SO:1000046	\N	"An interchromosomal mutation where a region of the chromosome is inverted with respect to wild type." [SO:ke]	SO:1000046	"A chromosomal inversion that includes the centromere." [FB:reference_manual]	491948	\N	\N	sequence	1	SO	chromosomal_inversion	pericentric_inversion
SO:1000028	SO:1000030	\N	"A chromosomal structure variation within a single chromosome." [SO:ke]	SO:1000046	"A chromosomal inversion that includes the centromere." [FB:reference_manual]	1074648	\N	\N	sequence	2	SO	intrachromosomal_mutation	pericentric_inversion
SO:1000183	SO:1000028	\N	"" []	SO:1000046	"A chromosomal inversion that includes the centromere." [FB:reference_manual]	1905831	\N	\N	sequence	3	SO	chromosome_structure_variation	pericentric_inversion
SO:0000240	SO:1000183	\N	"" []	SO:1000046	"A chromosomal inversion that includes the centromere." [FB:reference_manual]	2930270	\N	\N	sequence	4	SO	chromosome_variation	pericentric_inversion
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000046	"A chromosomal inversion that includes the centromere." [FB:reference_manual]	4003249	\N	\N	sequence	5	SO	variant_collection	pericentric_inversion
SO:0001524	SO:0000240	\N	"" []	SO:1000046	"A chromosomal inversion that includes the centromere." [FB:reference_manual]	4003250	\N	\N	sequence	5	SO	chromosomally_aberrant_genome	pericentric_inversion
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000046	"A chromosomal inversion that includes the centromere." [FB:reference_manual]	4967354	\N	\N	sequence	6	SO	sequence_collection	pericentric_inversion
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000046	"A chromosomal inversion that includes the centromere." [FB:reference_manual]	4967355	\N	\N	sequence	6	SO	variant_genome	pericentric_inversion
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000046	"A chromosomal inversion that includes the centromere." [FB:reference_manual]	5741770	\N	\N	sequence	7	SO	genome	pericentric_inversion
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000046	"A chromosomal inversion that includes the centromere." [FB:reference_manual]	6311365	\N	\N	sequence	8	SO	sequence_collection	pericentric_inversion
SO:1000047	\N	\N	"A chromosomal inversion that does not include the centromere." [FB:reference_manual]	SO:1000047	"A chromosomal inversion that does not include the centromere." [FB:reference_manual]	47125	\N	\N	sequence	0	SO	paracentric_inversion	paracentric_inversion
SO:1000030	SO:1000047	\N	"An interchromosomal mutation where a region of the chromosome is inverted with respect to wild type." [SO:ke]	SO:1000047	"A chromosomal inversion that does not include the centromere." [FB:reference_manual]	491949	\N	\N	sequence	1	SO	chromosomal_inversion	paracentric_inversion
SO:1000028	SO:1000030	\N	"A chromosomal structure variation within a single chromosome." [SO:ke]	SO:1000047	"A chromosomal inversion that does not include the centromere." [FB:reference_manual]	1074649	\N	\N	sequence	2	SO	intrachromosomal_mutation	paracentric_inversion
SO:1000183	SO:1000028	\N	"" []	SO:1000047	"A chromosomal inversion that does not include the centromere." [FB:reference_manual]	1905832	\N	\N	sequence	3	SO	chromosome_structure_variation	paracentric_inversion
SO:0000240	SO:1000183	\N	"" []	SO:1000047	"A chromosomal inversion that does not include the centromere." [FB:reference_manual]	2930271	\N	\N	sequence	4	SO	chromosome_variation	paracentric_inversion
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000047	"A chromosomal inversion that does not include the centromere." [FB:reference_manual]	4003251	\N	\N	sequence	5	SO	variant_collection	paracentric_inversion
SO:0001524	SO:0000240	\N	"" []	SO:1000047	"A chromosomal inversion that does not include the centromere." [FB:reference_manual]	4003252	\N	\N	sequence	5	SO	chromosomally_aberrant_genome	paracentric_inversion
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000047	"A chromosomal inversion that does not include the centromere." [FB:reference_manual]	4967356	\N	\N	sequence	6	SO	sequence_collection	paracentric_inversion
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000047	"A chromosomal inversion that does not include the centromere." [FB:reference_manual]	4967357	\N	\N	sequence	6	SO	variant_genome	paracentric_inversion
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000047	"A chromosomal inversion that does not include the centromere." [FB:reference_manual]	5741771	\N	\N	sequence	7	SO	genome	paracentric_inversion
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000047	"A chromosomal inversion that does not include the centromere." [FB:reference_manual]	6311366	\N	\N	sequence	8	SO	sequence_collection	paracentric_inversion
SO:1000048	\N	\N	"A chromosomal translocation with two breaks; two chromosome segments have simply been exchanged." [FB:reference_manual]	SO:1000048	"A chromosomal translocation with two breaks; two chromosome segments have simply been exchanged." [FB:reference_manual]	47126	\N	\N	sequence	0	SO	reciprocal_chromosomal_translocation	reciprocal_chromosomal_translocation
SO:1000044	SO:1000048	\N	"A chromosomal mutation. Rearrangements that alter the pairing of telomeres are classified as translocations." [FB:reference_manual]	SO:1000048	"A chromosomal translocation with two breaks; two chromosome segments have simply been exchanged." [FB:reference_manual]	491950	\N	\N	sequence	1	SO	chromosomal_translocation	reciprocal_chromosomal_translocation
SO:0000199	SO:1000044	\N	"A region of nucleotide sequence that has translocated to a new position. The observed adjacency of two previously separated regions." [NCBI:th, SO:ke]	SO:1000048	"A chromosomal translocation with two breaks; two chromosome segments have simply been exchanged." [FB:reference_manual]	1074650	\N	DBVAR	sequence	2	SO	translocation	reciprocal_chromosomal_translocation
SO:1000031	SO:1000044	\N	"A chromosomal structure variation whereby more than one chromosome is involved." [SO:ke]	SO:1000048	"A chromosomal translocation with two breaks; two chromosome segments have simply been exchanged." [FB:reference_manual]	1074651	\N	\N	sequence	2	SO	interchromosomal_mutation	reciprocal_chromosomal_translocation
SO:0001785	SO:0000199	\N	"" []	SO:1000048	"A chromosomal translocation with two breaks; two chromosome segments have simply been exchanged." [FB:reference_manual]	1905833	DBVAR	DBVAR	sequence	3	SO	structural_alteration	reciprocal_chromosomal_translocation
SO:1000183	SO:1000031	\N	"" []	SO:1000048	"A chromosomal translocation with two breaks; two chromosome segments have simply been exchanged." [FB:reference_manual]	1905834	\N	\N	sequence	3	SO	chromosome_structure_variation	reciprocal_chromosomal_translocation
SO:0001059	SO:0001785	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000048	"A chromosomal translocation with two breaks; two chromosome segments have simply been exchanged." [FB:reference_manual]	2930272	DBVAR	SOFA	sequence	4	SO	sequence_alteration	reciprocal_chromosomal_translocation
SO:0000240	SO:1000183	\N	"" []	SO:1000048	"A chromosomal translocation with two breaks; two chromosome segments have simply been exchanged." [FB:reference_manual]	2930273	\N	\N	sequence	4	SO	chromosome_variation	reciprocal_chromosomal_translocation
SO:0002072	SO:0001059	\N	"" []	SO:1000048	"A chromosomal translocation with two breaks; two chromosome segments have simply been exchanged." [FB:reference_manual]	4003253	SOFA	\N	sequence	5	SO	sequence_comparison	reciprocal_chromosomal_translocation
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000048	"A chromosomal translocation with two breaks; two chromosome segments have simply been exchanged." [FB:reference_manual]	4003254	\N	\N	sequence	5	SO	variant_collection	reciprocal_chromosomal_translocation
SO:0001524	SO:0000240	\N	"" []	SO:1000048	"A chromosomal translocation with two breaks; two chromosome segments have simply been exchanged." [FB:reference_manual]	4003255	\N	\N	sequence	5	SO	chromosomally_aberrant_genome	reciprocal_chromosomal_translocation
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000048	"A chromosomal translocation with two breaks; two chromosome segments have simply been exchanged." [FB:reference_manual]	4967358	\N	SOFA	sequence	6	SO	sequence_feature	reciprocal_chromosomal_translocation
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000048	"A chromosomal translocation with two breaks; two chromosome segments have simply been exchanged." [FB:reference_manual]	4967359	\N	\N	sequence	6	SO	sequence_collection	reciprocal_chromosomal_translocation
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000048	"A chromosomal translocation with two breaks; two chromosome segments have simply been exchanged." [FB:reference_manual]	4967360	\N	\N	sequence	6	SO	variant_genome	reciprocal_chromosomal_translocation
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000048	"A chromosomal translocation with two breaks; two chromosome segments have simply been exchanged." [FB:reference_manual]	5741772	\N	\N	sequence	7	SO	genome	reciprocal_chromosomal_translocation
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000048	"A chromosomal translocation with two breaks; two chromosome segments have simply been exchanged." [FB:reference_manual]	6311367	\N	\N	sequence	8	SO	sequence_collection	reciprocal_chromosomal_translocation
SO:1000136	\N	\N	"An autosynaptic chromosome is the aneuploid product of recombination between a pericentric inversion and a cytologically wild-type chromosome." [PMID:6804304]	SO:1000136	"An autosynaptic chromosome is the aneuploid product of recombination between a pericentric inversion and a cytologically wild-type chromosome." [PMID:6804304]	47127	\N	\N	sequence	0	SO	autosynaptic_chromosome	autosynaptic_chromosome
SO:1000183	SO:1000136	\N	"" []	SO:1000136	"An autosynaptic chromosome is the aneuploid product of recombination between a pericentric inversion and a cytologically wild-type chromosome." [PMID:6804304]	491951	\N	\N	sequence	1	SO	chromosome_structure_variation	autosynaptic_chromosome
SO:0000240	SO:1000183	\N	"" []	SO:1000136	"An autosynaptic chromosome is the aneuploid product of recombination between a pericentric inversion and a cytologically wild-type chromosome." [PMID:6804304]	1074652	\N	\N	sequence	2	SO	chromosome_variation	autosynaptic_chromosome
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000136	"An autosynaptic chromosome is the aneuploid product of recombination between a pericentric inversion and a cytologically wild-type chromosome." [PMID:6804304]	1905835	\N	\N	sequence	3	SO	variant_collection	autosynaptic_chromosome
SO:0001524	SO:0000240	\N	"" []	SO:1000136	"An autosynaptic chromosome is the aneuploid product of recombination between a pericentric inversion and a cytologically wild-type chromosome." [PMID:6804304]	1905836	\N	\N	sequence	3	SO	chromosomally_aberrant_genome	autosynaptic_chromosome
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000136	"An autosynaptic chromosome is the aneuploid product of recombination between a pericentric inversion and a cytologically wild-type chromosome." [PMID:6804304]	2930274	\N	\N	sequence	4	SO	sequence_collection	autosynaptic_chromosome
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000136	"An autosynaptic chromosome is the aneuploid product of recombination between a pericentric inversion and a cytologically wild-type chromosome." [PMID:6804304]	2930275	\N	\N	sequence	4	SO	variant_genome	autosynaptic_chromosome
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000136	"An autosynaptic chromosome is the aneuploid product of recombination between a pericentric inversion and a cytologically wild-type chromosome." [PMID:6804304]	4003256	\N	\N	sequence	5	SO	genome	autosynaptic_chromosome
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000136	"An autosynaptic chromosome is the aneuploid product of recombination between a pericentric inversion and a cytologically wild-type chromosome." [PMID:6804304]	4967361	\N	\N	sequence	6	SO	sequence_collection	autosynaptic_chromosome
SO:1000138	\N	\N	"A compound chromosome whereby two copies of the same chromosomal arm attached to a common centromere. The chromosome is diploid for the arm involved." [SO:ke]	SO:1000138	"A compound chromosome whereby two copies of the same chromosomal arm attached to a common centromere. The chromosome is diploid for the arm involved." [SO:ke]	47128	\N	\N	sequence	0	SO	homo_compound_chromosome	homo_compound_chromosome
SO:1000042	SO:1000138	\N	"A chromosome structure variant where a monocentric element is caused by the fusion of two chromosome arms." [SO:ke]	SO:1000138	"A compound chromosome whereby two copies of the same chromosomal arm attached to a common centromere. The chromosome is diploid for the arm involved." [SO:ke]	491952	\N	\N	sequence	1	SO	compound_chromosome	homo_compound_chromosome
SO:1000183	SO:1000042	\N	"" []	SO:1000138	"A compound chromosome whereby two copies of the same chromosomal arm attached to a common centromere. The chromosome is diploid for the arm involved." [SO:ke]	1074653	\N	\N	sequence	2	SO	chromosome_structure_variation	homo_compound_chromosome
SO:0000240	SO:1000183	\N	"" []	SO:1000138	"A compound chromosome whereby two copies of the same chromosomal arm attached to a common centromere. The chromosome is diploid for the arm involved." [SO:ke]	1905837	\N	\N	sequence	3	SO	chromosome_variation	homo_compound_chromosome
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000138	"A compound chromosome whereby two copies of the same chromosomal arm attached to a common centromere. The chromosome is diploid for the arm involved." [SO:ke]	2930276	\N	\N	sequence	4	SO	variant_collection	homo_compound_chromosome
SO:0001524	SO:0000240	\N	"" []	SO:1000138	"A compound chromosome whereby two copies of the same chromosomal arm attached to a common centromere. The chromosome is diploid for the arm involved." [SO:ke]	2930277	\N	\N	sequence	4	SO	chromosomally_aberrant_genome	homo_compound_chromosome
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000138	"A compound chromosome whereby two copies of the same chromosomal arm attached to a common centromere. The chromosome is diploid for the arm involved." [SO:ke]	4003257	\N	\N	sequence	5	SO	sequence_collection	homo_compound_chromosome
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000138	"A compound chromosome whereby two copies of the same chromosomal arm attached to a common centromere. The chromosome is diploid for the arm involved." [SO:ke]	4003258	\N	\N	sequence	5	SO	variant_genome	homo_compound_chromosome
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000138	"A compound chromosome whereby two copies of the same chromosomal arm attached to a common centromere. The chromosome is diploid for the arm involved." [SO:ke]	4967362	\N	\N	sequence	6	SO	genome	homo_compound_chromosome
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000138	"A compound chromosome whereby two copies of the same chromosomal arm attached to a common centromere. The chromosome is diploid for the arm involved." [SO:ke]	5741773	\N	\N	sequence	7	SO	sequence_collection	homo_compound_chromosome
SO:1000140	\N	\N	"A compound chromosome whereby two arms from different chromosomes are connected through the centromere of one of them." [FB:reference_manual, SO:ke]	SO:1000140	"A compound chromosome whereby two arms from different chromosomes are connected through the centromere of one of them." [FB:reference_manual, SO:ke]	47129	\N	\N	sequence	0	SO	hetero_compound_chromosome	hetero_compound_chromosome
SO:1000042	SO:1000140	\N	"A chromosome structure variant where a monocentric element is caused by the fusion of two chromosome arms." [SO:ke]	SO:1000140	"A compound chromosome whereby two arms from different chromosomes are connected through the centromere of one of them." [FB:reference_manual, SO:ke]	491953	\N	\N	sequence	1	SO	compound_chromosome	hetero_compound_chromosome
SO:1000183	SO:1000042	\N	"" []	SO:1000140	"A compound chromosome whereby two arms from different chromosomes are connected through the centromere of one of them." [FB:reference_manual, SO:ke]	1074654	\N	\N	sequence	2	SO	chromosome_structure_variation	hetero_compound_chromosome
SO:0000240	SO:1000183	\N	"" []	SO:1000140	"A compound chromosome whereby two arms from different chromosomes are connected through the centromere of one of them." [FB:reference_manual, SO:ke]	1905838	\N	\N	sequence	3	SO	chromosome_variation	hetero_compound_chromosome
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000140	"A compound chromosome whereby two arms from different chromosomes are connected through the centromere of one of them." [FB:reference_manual, SO:ke]	2930278	\N	\N	sequence	4	SO	variant_collection	hetero_compound_chromosome
SO:0001524	SO:0000240	\N	"" []	SO:1000140	"A compound chromosome whereby two arms from different chromosomes are connected through the centromere of one of them." [FB:reference_manual, SO:ke]	2930279	\N	\N	sequence	4	SO	chromosomally_aberrant_genome	hetero_compound_chromosome
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000140	"A compound chromosome whereby two arms from different chromosomes are connected through the centromere of one of them." [FB:reference_manual, SO:ke]	4003259	\N	\N	sequence	5	SO	sequence_collection	hetero_compound_chromosome
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000140	"A compound chromosome whereby two arms from different chromosomes are connected through the centromere of one of them." [FB:reference_manual, SO:ke]	4003260	\N	\N	sequence	5	SO	variant_genome	hetero_compound_chromosome
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000140	"A compound chromosome whereby two arms from different chromosomes are connected through the centromere of one of them." [FB:reference_manual, SO:ke]	4967363	\N	\N	sequence	6	SO	genome	hetero_compound_chromosome
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000140	"A compound chromosome whereby two arms from different chromosomes are connected through the centromere of one of them." [FB:reference_manual, SO:ke]	5741774	\N	\N	sequence	7	SO	sequence_collection	hetero_compound_chromosome
SO:1000141	\N	\N	"A chromosome that occurred by the division of a larger chromosome." [SO:ke]	SO:1000141	"A chromosome that occurred by the division of a larger chromosome." [SO:ke]	47130	\N	\N	sequence	0	SO	chromosome_fission	chromosome_fission
SO:1000028	SO:1000141	\N	"A chromosomal structure variation within a single chromosome." [SO:ke]	SO:1000141	"A chromosome that occurred by the division of a larger chromosome." [SO:ke]	491954	\N	\N	sequence	1	SO	intrachromosomal_mutation	chromosome_fission
SO:1000183	SO:1000028	\N	"" []	SO:1000141	"A chromosome that occurred by the division of a larger chromosome." [SO:ke]	1074655	\N	\N	sequence	2	SO	chromosome_structure_variation	chromosome_fission
SO:0000240	SO:1000183	\N	"" []	SO:1000141	"A chromosome that occurred by the division of a larger chromosome." [SO:ke]	1905839	\N	\N	sequence	3	SO	chromosome_variation	chromosome_fission
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000141	"A chromosome that occurred by the division of a larger chromosome." [SO:ke]	2930280	\N	\N	sequence	4	SO	variant_collection	chromosome_fission
SO:0001524	SO:0000240	\N	"" []	SO:1000141	"A chromosome that occurred by the division of a larger chromosome." [SO:ke]	2930281	\N	\N	sequence	4	SO	chromosomally_aberrant_genome	chromosome_fission
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000141	"A chromosome that occurred by the division of a larger chromosome." [SO:ke]	4003261	\N	\N	sequence	5	SO	sequence_collection	chromosome_fission
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000141	"A chromosome that occurred by the division of a larger chromosome." [SO:ke]	4003262	\N	\N	sequence	5	SO	variant_genome	chromosome_fission
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000141	"A chromosome that occurred by the division of a larger chromosome." [SO:ke]	4967364	\N	\N	sequence	6	SO	genome	chromosome_fission
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000141	"A chromosome that occurred by the division of a larger chromosome." [SO:ke]	5741775	\N	\N	sequence	7	SO	sequence_collection	chromosome_fission
SO:1000142	\N	\N	"An autosynaptic chromosome carrying the two right (D = dextro) telomeres." [FB:manual]	SO:1000142	"An autosynaptic chromosome carrying the two right (D = dextro) telomeres." [FB:manual]	47131	\N	\N	sequence	0	SO	dexstrosynaptic_chromosome	dexstrosynaptic_chromosome
SO:1000136	SO:1000142	\N	"An autosynaptic chromosome is the aneuploid product of recombination between a pericentric inversion and a cytologically wild-type chromosome." [PMID:6804304]	SO:1000142	"An autosynaptic chromosome carrying the two right (D = dextro) telomeres." [FB:manual]	491955	\N	\N	sequence	1	SO	autosynaptic_chromosome	dexstrosynaptic_chromosome
SO:1000183	SO:1000136	\N	"" []	SO:1000142	"An autosynaptic chromosome carrying the two right (D = dextro) telomeres." [FB:manual]	1074656	\N	\N	sequence	2	SO	chromosome_structure_variation	dexstrosynaptic_chromosome
SO:0000240	SO:1000183	\N	"" []	SO:1000142	"An autosynaptic chromosome carrying the two right (D = dextro) telomeres." [FB:manual]	1905840	\N	\N	sequence	3	SO	chromosome_variation	dexstrosynaptic_chromosome
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000142	"An autosynaptic chromosome carrying the two right (D = dextro) telomeres." [FB:manual]	2930282	\N	\N	sequence	4	SO	variant_collection	dexstrosynaptic_chromosome
SO:0001524	SO:0000240	\N	"" []	SO:1000142	"An autosynaptic chromosome carrying the two right (D = dextro) telomeres." [FB:manual]	2930283	\N	\N	sequence	4	SO	chromosomally_aberrant_genome	dexstrosynaptic_chromosome
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000142	"An autosynaptic chromosome carrying the two right (D = dextro) telomeres." [FB:manual]	4003263	\N	\N	sequence	5	SO	sequence_collection	dexstrosynaptic_chromosome
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000142	"An autosynaptic chromosome carrying the two right (D = dextro) telomeres." [FB:manual]	4003264	\N	\N	sequence	5	SO	variant_genome	dexstrosynaptic_chromosome
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000142	"An autosynaptic chromosome carrying the two right (D = dextro) telomeres." [FB:manual]	4967365	\N	\N	sequence	6	SO	genome	dexstrosynaptic_chromosome
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000142	"An autosynaptic chromosome carrying the two right (D = dextro) telomeres." [FB:manual]	5741776	\N	\N	sequence	7	SO	sequence_collection	dexstrosynaptic_chromosome
SO:1000143	\N	\N	"LS is an autosynaptic chromosome carrying the two left (L = levo) telomeres." [FB:manual]	SO:1000143	"LS is an autosynaptic chromosome carrying the two left (L = levo) telomeres." [FB:manual]	47132	\N	\N	sequence	0	SO	laevosynaptic_chromosome	laevosynaptic_chromosome
SO:1000136	SO:1000143	\N	"An autosynaptic chromosome is the aneuploid product of recombination between a pericentric inversion and a cytologically wild-type chromosome." [PMID:6804304]	SO:1000143	"LS is an autosynaptic chromosome carrying the two left (L = levo) telomeres." [FB:manual]	491956	\N	\N	sequence	1	SO	autosynaptic_chromosome	laevosynaptic_chromosome
SO:1000183	SO:1000136	\N	"" []	SO:1000143	"LS is an autosynaptic chromosome carrying the two left (L = levo) telomeres." [FB:manual]	1074657	\N	\N	sequence	2	SO	chromosome_structure_variation	laevosynaptic_chromosome
SO:0000240	SO:1000183	\N	"" []	SO:1000143	"LS is an autosynaptic chromosome carrying the two left (L = levo) telomeres." [FB:manual]	1905841	\N	\N	sequence	3	SO	chromosome_variation	laevosynaptic_chromosome
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000143	"LS is an autosynaptic chromosome carrying the two left (L = levo) telomeres." [FB:manual]	2930284	\N	\N	sequence	4	SO	variant_collection	laevosynaptic_chromosome
SO:0001524	SO:0000240	\N	"" []	SO:1000143	"LS is an autosynaptic chromosome carrying the two left (L = levo) telomeres." [FB:manual]	2930285	\N	\N	sequence	4	SO	chromosomally_aberrant_genome	laevosynaptic_chromosome
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000143	"LS is an autosynaptic chromosome carrying the two left (L = levo) telomeres." [FB:manual]	4003265	\N	\N	sequence	5	SO	sequence_collection	laevosynaptic_chromosome
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000143	"LS is an autosynaptic chromosome carrying the two left (L = levo) telomeres." [FB:manual]	4003266	\N	\N	sequence	5	SO	variant_genome	laevosynaptic_chromosome
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000143	"LS is an autosynaptic chromosome carrying the two left (L = levo) telomeres." [FB:manual]	4967366	\N	\N	sequence	6	SO	genome	laevosynaptic_chromosome
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000143	"LS is an autosynaptic chromosome carrying the two left (L = levo) telomeres." [FB:manual]	5741777	\N	\N	sequence	7	SO	sequence_collection	laevosynaptic_chromosome
SO:1000144	\N	\N	"A chromosome structure variation whereby the duplicated sequences are carried as a free centric element." [FB:reference_manual]	SO:1000144	"A chromosome structure variation whereby the duplicated sequences are carried as a free centric element." [FB:reference_manual]	47133	\N	\N	sequence	0	SO	free_duplication	free_duplication
SO:1000037	SO:1000144	\N	"An extra chromosome." [SO:ke]	SO:1000144	"A chromosome structure variation whereby the duplicated sequences are carried as a free centric element." [FB:reference_manual]	491957	\N	\N	sequence	1	SO	chromosomal_duplication	free_duplication
SO:1000183	SO:1000037	\N	"" []	SO:1000144	"A chromosome structure variation whereby the duplicated sequences are carried as a free centric element." [FB:reference_manual]	1074658	\N	\N	sequence	2	SO	chromosome_structure_variation	free_duplication
SO:0000240	SO:1000183	\N	"" []	SO:1000144	"A chromosome structure variation whereby the duplicated sequences are carried as a free centric element." [FB:reference_manual]	1905842	\N	\N	sequence	3	SO	chromosome_variation	free_duplication
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000144	"A chromosome structure variation whereby the duplicated sequences are carried as a free centric element." [FB:reference_manual]	2930286	\N	\N	sequence	4	SO	variant_collection	free_duplication
SO:0001524	SO:0000240	\N	"" []	SO:1000144	"A chromosome structure variation whereby the duplicated sequences are carried as a free centric element." [FB:reference_manual]	2930287	\N	\N	sequence	4	SO	chromosomally_aberrant_genome	free_duplication
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000144	"A chromosome structure variation whereby the duplicated sequences are carried as a free centric element." [FB:reference_manual]	4003267	\N	\N	sequence	5	SO	sequence_collection	free_duplication
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000144	"A chromosome structure variation whereby the duplicated sequences are carried as a free centric element." [FB:reference_manual]	4003268	\N	\N	sequence	5	SO	variant_genome	free_duplication
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000144	"A chromosome structure variation whereby the duplicated sequences are carried as a free centric element." [FB:reference_manual]	4967367	\N	\N	sequence	6	SO	genome	free_duplication
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000144	"A chromosome structure variation whereby the duplicated sequences are carried as a free centric element." [FB:reference_manual]	5741778	\N	\N	sequence	7	SO	sequence_collection	free_duplication
SO:1000145	\N	\N	"A ring chromosome which is a copy of another chromosome." [SO:ke]	SO:1000145	"A ring chromosome which is a copy of another chromosome." [SO:ke]	47134	\N	\N	sequence	0	SO	free_ring_duplication	free_ring_duplication
SO:1000045	SO:1000145	\N	"A ring chromosome is a chromosome whose arms have fused together to form a ring, often with the loss of the ends of the chromosome." [http://en.wikipedia.org/wiki/Ring_chromosome]	SO:1000145	"A ring chromosome which is a copy of another chromosome." [SO:ke]	491958	\N	\N	sequence	1	SO	ring_chromosome	free_ring_duplication
SO:1000144	SO:1000145	\N	"A chromosome structure variation whereby the duplicated sequences are carried as a free centric element." [FB:reference_manual]	SO:1000145	"A ring chromosome which is a copy of another chromosome." [SO:ke]	491959	\N	\N	sequence	1	SO	free_duplication	free_ring_duplication
SO:1000028	SO:1000045	\N	"A chromosomal structure variation within a single chromosome." [SO:ke]	SO:1000145	"A ring chromosome which is a copy of another chromosome." [SO:ke]	1074659	\N	\N	sequence	2	SO	intrachromosomal_mutation	free_ring_duplication
SO:1000037	SO:1000144	\N	"An extra chromosome." [SO:ke]	SO:1000145	"A ring chromosome which is a copy of another chromosome." [SO:ke]	1074660	\N	\N	sequence	2	SO	chromosomal_duplication	free_ring_duplication
SO:1000183	SO:1000028	\N	"" []	SO:1000145	"A ring chromosome which is a copy of another chromosome." [SO:ke]	1905843	\N	\N	sequence	3	SO	chromosome_structure_variation	free_ring_duplication
SO:1000183	SO:1000037	\N	"" []	SO:1000145	"A ring chromosome which is a copy of another chromosome." [SO:ke]	1905844	\N	\N	sequence	3	SO	chromosome_structure_variation	free_ring_duplication
SO:0000240	SO:1000183	\N	"" []	SO:1000145	"A ring chromosome which is a copy of another chromosome." [SO:ke]	2930288	\N	\N	sequence	4	SO	chromosome_variation	free_ring_duplication
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000145	"A ring chromosome which is a copy of another chromosome." [SO:ke]	4003269	\N	\N	sequence	5	SO	variant_collection	free_ring_duplication
SO:0001524	SO:0000240	\N	"" []	SO:1000145	"A ring chromosome which is a copy of another chromosome." [SO:ke]	4003270	\N	\N	sequence	5	SO	chromosomally_aberrant_genome	free_ring_duplication
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000145	"A ring chromosome which is a copy of another chromosome." [SO:ke]	4967368	\N	\N	sequence	6	SO	sequence_collection	free_ring_duplication
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000145	"A ring chromosome which is a copy of another chromosome." [SO:ke]	4967369	\N	\N	sequence	6	SO	variant_genome	free_ring_duplication
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000145	"A ring chromosome which is a copy of another chromosome." [SO:ke]	5741779	\N	\N	sequence	7	SO	genome	free_ring_duplication
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000145	"A ring chromosome which is a copy of another chromosome." [SO:ke]	6311368	\N	\N	sequence	8	SO	sequence_collection	free_ring_duplication
SO:1000147	\N	\N	"A chromosomal deletion whereby a translocation occurs in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	SO:1000147	"A chromosomal deletion whereby a translocation occurs in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	47135	\N	\N	sequence	0	SO	deficient_translocation	deficient_translocation
SO:1000029	SO:1000147	\N	"An incomplete chromosome." [SO:ke]	SO:1000147	"A chromosomal deletion whereby a translocation occurs in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	491960	\N	\N	sequence	1	SO	chromosomal_deletion	deficient_translocation
SO:1000044	SO:1000147	\N	"A chromosomal mutation. Rearrangements that alter the pairing of telomeres are classified as translocations." [FB:reference_manual]	SO:1000147	"A chromosomal deletion whereby a translocation occurs in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	491961	\N	\N	sequence	1	SO	chromosomal_translocation	deficient_translocation
SO:1000028	SO:1000029	\N	"A chromosomal structure variation within a single chromosome." [SO:ke]	SO:1000147	"A chromosomal deletion whereby a translocation occurs in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	1074661	\N	\N	sequence	2	SO	intrachromosomal_mutation	deficient_translocation
SO:0000199	SO:1000044	\N	"A region of nucleotide sequence that has translocated to a new position. The observed adjacency of two previously separated regions." [NCBI:th, SO:ke]	SO:1000147	"A chromosomal deletion whereby a translocation occurs in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	1074662	\N	DBVAR	sequence	2	SO	translocation	deficient_translocation
SO:1000031	SO:1000044	\N	"A chromosomal structure variation whereby more than one chromosome is involved." [SO:ke]	SO:1000147	"A chromosomal deletion whereby a translocation occurs in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	1074663	\N	\N	sequence	2	SO	interchromosomal_mutation	deficient_translocation
SO:1000183	SO:1000028	\N	"" []	SO:1000147	"A chromosomal deletion whereby a translocation occurs in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	1905845	\N	\N	sequence	3	SO	chromosome_structure_variation	deficient_translocation
SO:0001785	SO:0000199	\N	"" []	SO:1000147	"A chromosomal deletion whereby a translocation occurs in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	1905846	DBVAR	DBVAR	sequence	3	SO	structural_alteration	deficient_translocation
SO:1000183	SO:1000031	\N	"" []	SO:1000147	"A chromosomal deletion whereby a translocation occurs in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	1905847	\N	\N	sequence	3	SO	chromosome_structure_variation	deficient_translocation
SO:0000240	SO:1000183	\N	"" []	SO:1000147	"A chromosomal deletion whereby a translocation occurs in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	2930289	\N	\N	sequence	4	SO	chromosome_variation	deficient_translocation
SO:0001059	SO:0001785	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000147	"A chromosomal deletion whereby a translocation occurs in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	2930290	DBVAR	SOFA	sequence	4	SO	sequence_alteration	deficient_translocation
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000147	"A chromosomal deletion whereby a translocation occurs in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	4003271	\N	\N	sequence	5	SO	variant_collection	deficient_translocation
SO:0001524	SO:0000240	\N	"" []	SO:1000147	"A chromosomal deletion whereby a translocation occurs in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	4003272	\N	\N	sequence	5	SO	chromosomally_aberrant_genome	deficient_translocation
SO:0002072	SO:0001059	\N	"" []	SO:1000147	"A chromosomal deletion whereby a translocation occurs in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	4003273	SOFA	\N	sequence	5	SO	sequence_comparison	deficient_translocation
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000147	"A chromosomal deletion whereby a translocation occurs in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	4967370	\N	\N	sequence	6	SO	sequence_collection	deficient_translocation
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000147	"A chromosomal deletion whereby a translocation occurs in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	4967371	\N	\N	sequence	6	SO	variant_genome	deficient_translocation
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000147	"A chromosomal deletion whereby a translocation occurs in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	4967372	\N	SOFA	sequence	6	SO	sequence_feature	deficient_translocation
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000147	"A chromosomal deletion whereby a translocation occurs in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	5741780	\N	\N	sequence	7	SO	genome	deficient_translocation
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000147	"A chromosomal deletion whereby a translocation occurs in which one of the four broken ends loses a segment before re-joining." [FB:reference_manual]	6311369	\N	\N	sequence	8	SO	sequence_collection	deficient_translocation
SO:1000148	\N	\N	"A chromosomal translocation whereby the first two breaks are in the same chromosome, and the region between them is rejoined in inverted order to the other side of the first break, such that both sides of break one are present on the same chromosome. The remaining free ends are joined as a translocation with those resulting from the third break." [FB:reference_manual]	SO:1000148	"A chromosomal translocation whereby the first two breaks are in the same chromosome, and the region between them is rejoined in inverted order to the other side of the first break, such that both sides of break one are present on the same chromosome. The remaining free ends are joined as a translocation with those resulting from the third break." [FB:reference_manual]	47136	\N	\N	sequence	0	SO	inversion_cum_translocation	inversion_cum_translocation
SO:1000030	SO:1000148	\N	"An interchromosomal mutation where a region of the chromosome is inverted with respect to wild type." [SO:ke]	SO:1000148	"A chromosomal translocation whereby the first two breaks are in the same chromosome, and the region between them is rejoined in inverted order to the other side of the first break, such that both sides of break one are present on the same chromosome. The remaining free ends are joined as a translocation with those resulting from the third break." [FB:reference_manual]	491962	\N	\N	sequence	1	SO	chromosomal_inversion	inversion_cum_translocation
SO:1000044	SO:1000148	\N	"A chromosomal mutation. Rearrangements that alter the pairing of telomeres are classified as translocations." [FB:reference_manual]	SO:1000148	"A chromosomal translocation whereby the first two breaks are in the same chromosome, and the region between them is rejoined in inverted order to the other side of the first break, such that both sides of break one are present on the same chromosome. The remaining free ends are joined as a translocation with those resulting from the third break." [FB:reference_manual]	491963	\N	\N	sequence	1	SO	chromosomal_translocation	inversion_cum_translocation
SO:1000028	SO:1000030	\N	"A chromosomal structure variation within a single chromosome." [SO:ke]	SO:1000148	"A chromosomal translocation whereby the first two breaks are in the same chromosome, and the region between them is rejoined in inverted order to the other side of the first break, such that both sides of break one are present on the same chromosome. The remaining free ends are joined as a translocation with those resulting from the third break." [FB:reference_manual]	1074664	\N	\N	sequence	2	SO	intrachromosomal_mutation	inversion_cum_translocation
SO:0000199	SO:1000044	\N	"A region of nucleotide sequence that has translocated to a new position. The observed adjacency of two previously separated regions." [NCBI:th, SO:ke]	SO:1000148	"A chromosomal translocation whereby the first two breaks are in the same chromosome, and the region between them is rejoined in inverted order to the other side of the first break, such that both sides of break one are present on the same chromosome. The remaining free ends are joined as a translocation with those resulting from the third break." [FB:reference_manual]	1074665	\N	DBVAR	sequence	2	SO	translocation	inversion_cum_translocation
SO:1000031	SO:1000044	\N	"A chromosomal structure variation whereby more than one chromosome is involved." [SO:ke]	SO:1000148	"A chromosomal translocation whereby the first two breaks are in the same chromosome, and the region between them is rejoined in inverted order to the other side of the first break, such that both sides of break one are present on the same chromosome. The remaining free ends are joined as a translocation with those resulting from the third break." [FB:reference_manual]	1074666	\N	\N	sequence	2	SO	interchromosomal_mutation	inversion_cum_translocation
SO:1000183	SO:1000028	\N	"" []	SO:1000148	"A chromosomal translocation whereby the first two breaks are in the same chromosome, and the region between them is rejoined in inverted order to the other side of the first break, such that both sides of break one are present on the same chromosome. The remaining free ends are joined as a translocation with those resulting from the third break." [FB:reference_manual]	1905848	\N	\N	sequence	3	SO	chromosome_structure_variation	inversion_cum_translocation
SO:0001785	SO:0000199	\N	"" []	SO:1000148	"A chromosomal translocation whereby the first two breaks are in the same chromosome, and the region between them is rejoined in inverted order to the other side of the first break, such that both sides of break one are present on the same chromosome. The remaining free ends are joined as a translocation with those resulting from the third break." [FB:reference_manual]	1905849	DBVAR	DBVAR	sequence	3	SO	structural_alteration	inversion_cum_translocation
SO:1000183	SO:1000031	\N	"" []	SO:1000148	"A chromosomal translocation whereby the first two breaks are in the same chromosome, and the region between them is rejoined in inverted order to the other side of the first break, such that both sides of break one are present on the same chromosome. The remaining free ends are joined as a translocation with those resulting from the third break." [FB:reference_manual]	1905850	\N	\N	sequence	3	SO	chromosome_structure_variation	inversion_cum_translocation
SO:0000240	SO:1000183	\N	"" []	SO:1000148	"A chromosomal translocation whereby the first two breaks are in the same chromosome, and the region between them is rejoined in inverted order to the other side of the first break, such that both sides of break one are present on the same chromosome. The remaining free ends are joined as a translocation with those resulting from the third break." [FB:reference_manual]	2930291	\N	\N	sequence	4	SO	chromosome_variation	inversion_cum_translocation
SO:0001059	SO:0001785	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000148	"A chromosomal translocation whereby the first two breaks are in the same chromosome, and the region between them is rejoined in inverted order to the other side of the first break, such that both sides of break one are present on the same chromosome. The remaining free ends are joined as a translocation with those resulting from the third break." [FB:reference_manual]	2930292	DBVAR	SOFA	sequence	4	SO	sequence_alteration	inversion_cum_translocation
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000148	"A chromosomal translocation whereby the first two breaks are in the same chromosome, and the region between them is rejoined in inverted order to the other side of the first break, such that both sides of break one are present on the same chromosome. The remaining free ends are joined as a translocation with those resulting from the third break." [FB:reference_manual]	4003274	\N	\N	sequence	5	SO	variant_collection	inversion_cum_translocation
SO:0001524	SO:0000240	\N	"" []	SO:1000148	"A chromosomal translocation whereby the first two breaks are in the same chromosome, and the region between them is rejoined in inverted order to the other side of the first break, such that both sides of break one are present on the same chromosome. The remaining free ends are joined as a translocation with those resulting from the third break." [FB:reference_manual]	4003275	\N	\N	sequence	5	SO	chromosomally_aberrant_genome	inversion_cum_translocation
SO:0002072	SO:0001059	\N	"" []	SO:1000148	"A chromosomal translocation whereby the first two breaks are in the same chromosome, and the region between them is rejoined in inverted order to the other side of the first break, such that both sides of break one are present on the same chromosome. The remaining free ends are joined as a translocation with those resulting from the third break." [FB:reference_manual]	4003276	SOFA	\N	sequence	5	SO	sequence_comparison	inversion_cum_translocation
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000148	"A chromosomal translocation whereby the first two breaks are in the same chromosome, and the region between them is rejoined in inverted order to the other side of the first break, such that both sides of break one are present on the same chromosome. The remaining free ends are joined as a translocation with those resulting from the third break." [FB:reference_manual]	4967373	\N	\N	sequence	6	SO	sequence_collection	inversion_cum_translocation
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000148	"A chromosomal translocation whereby the first two breaks are in the same chromosome, and the region between them is rejoined in inverted order to the other side of the first break, such that both sides of break one are present on the same chromosome. The remaining free ends are joined as a translocation with those resulting from the third break." [FB:reference_manual]	4967374	\N	\N	sequence	6	SO	variant_genome	inversion_cum_translocation
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000148	"A chromosomal translocation whereby the first two breaks are in the same chromosome, and the region between them is rejoined in inverted order to the other side of the first break, such that both sides of break one are present on the same chromosome. The remaining free ends are joined as a translocation with those resulting from the third break." [FB:reference_manual]	4967375	\N	SOFA	sequence	6	SO	sequence_feature	inversion_cum_translocation
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000148	"A chromosomal translocation whereby the first two breaks are in the same chromosome, and the region between them is rejoined in inverted order to the other side of the first break, such that both sides of break one are present on the same chromosome. The remaining free ends are joined as a translocation with those resulting from the third break." [FB:reference_manual]	5741781	\N	\N	sequence	7	SO	genome	inversion_cum_translocation
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000148	"A chromosomal translocation whereby the first two breaks are in the same chromosome, and the region between them is rejoined in inverted order to the other side of the first break, such that both sides of break one are present on the same chromosome. The remaining free ends are joined as a translocation with those resulting from the third break." [FB:reference_manual]	6311370	\N	\N	sequence	8	SO	sequence_collection	inversion_cum_translocation
SO:1000149	\N	\N	"An interchromosomal mutation whereby the (large) region between the first two breaks listed is lost, and the two flanking segments (one of them centric) are joined as a translocation to the free ends resulting from the third break." [FB:reference_manual]	SO:1000149	"An interchromosomal mutation whereby the (large) region between the first two breaks listed is lost, and the two flanking segments (one of them centric) are joined as a translocation to the free ends resulting from the third break." [FB:reference_manual]	47137	\N	\N	sequence	0	SO	bipartite_duplication	bipartite_duplication
SO:1000031	SO:1000149	\N	"A chromosomal structure variation whereby more than one chromosome is involved." [SO:ke]	SO:1000149	"An interchromosomal mutation whereby the (large) region between the first two breaks listed is lost, and the two flanking segments (one of them centric) are joined as a translocation to the free ends resulting from the third break." [FB:reference_manual]	491964	\N	\N	sequence	1	SO	interchromosomal_mutation	bipartite_duplication
SO:1000038	SO:1000149	\N	"A duplication that occurred within a chromosome." [SO:ke]	SO:1000149	"An interchromosomal mutation whereby the (large) region between the first two breaks listed is lost, and the two flanking segments (one of them centric) are joined as a translocation to the free ends resulting from the third break." [FB:reference_manual]	491965	\N	\N	sequence	1	SO	intrachromosomal_duplication	bipartite_duplication
SO:1000183	SO:1000031	\N	"" []	SO:1000149	"An interchromosomal mutation whereby the (large) region between the first two breaks listed is lost, and the two flanking segments (one of them centric) are joined as a translocation to the free ends resulting from the third break." [FB:reference_manual]	1074667	\N	\N	sequence	2	SO	chromosome_structure_variation	bipartite_duplication
SO:1000028	SO:1000038	\N	"A chromosomal structure variation within a single chromosome." [SO:ke]	SO:1000149	"An interchromosomal mutation whereby the (large) region between the first two breaks listed is lost, and the two flanking segments (one of them centric) are joined as a translocation to the free ends resulting from the third break." [FB:reference_manual]	1074668	\N	\N	sequence	2	SO	intrachromosomal_mutation	bipartite_duplication
SO:1000037	SO:1000038	\N	"An extra chromosome." [SO:ke]	SO:1000149	"An interchromosomal mutation whereby the (large) region between the first two breaks listed is lost, and the two flanking segments (one of them centric) are joined as a translocation to the free ends resulting from the third break." [FB:reference_manual]	1074669	\N	\N	sequence	2	SO	chromosomal_duplication	bipartite_duplication
SO:0000240	SO:1000183	\N	"" []	SO:1000149	"An interchromosomal mutation whereby the (large) region between the first two breaks listed is lost, and the two flanking segments (one of them centric) are joined as a translocation to the free ends resulting from the third break." [FB:reference_manual]	2930295	\N	\N	sequence	4	SO	chromosome_variation	bipartite_duplication
SO:1000183	SO:1000028	\N	"" []	SO:1000149	"An interchromosomal mutation whereby the (large) region between the first two breaks listed is lost, and the two flanking segments (one of them centric) are joined as a translocation to the free ends resulting from the third break." [FB:reference_manual]	1905852	\N	\N	sequence	3	SO	chromosome_structure_variation	bipartite_duplication
SO:1000183	SO:1000037	\N	"" []	SO:1000149	"An interchromosomal mutation whereby the (large) region between the first two breaks listed is lost, and the two flanking segments (one of them centric) are joined as a translocation to the free ends resulting from the third break." [FB:reference_manual]	1905853	\N	\N	sequence	3	SO	chromosome_structure_variation	bipartite_duplication
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000149	"An interchromosomal mutation whereby the (large) region between the first two breaks listed is lost, and the two flanking segments (one of them centric) are joined as a translocation to the free ends resulting from the third break." [FB:reference_manual]	3174048	\N	\N	sequence	5	SO	variant_collection	bipartite_duplication
SO:0001524	SO:0000240	\N	"" []	SO:1000149	"An interchromosomal mutation whereby the (large) region between the first two breaks listed is lost, and the two flanking segments (one of them centric) are joined as a translocation to the free ends resulting from the third break." [FB:reference_manual]	3174049	\N	\N	sequence	5	SO	chromosomally_aberrant_genome	bipartite_duplication
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000149	"An interchromosomal mutation whereby the (large) region between the first two breaks listed is lost, and the two flanking segments (one of them centric) are joined as a translocation to the free ends resulting from the third break." [FB:reference_manual]	4385903	\N	\N	sequence	6	SO	sequence_collection	bipartite_duplication
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000149	"An interchromosomal mutation whereby the (large) region between the first two breaks listed is lost, and the two flanking segments (one of them centric) are joined as a translocation to the free ends resulting from the third break." [FB:reference_manual]	4385904	\N	\N	sequence	6	SO	variant_genome	bipartite_duplication
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000149	"An interchromosomal mutation whereby the (large) region between the first two breaks listed is lost, and the two flanking segments (one of them centric) are joined as a translocation to the free ends resulting from the third break." [FB:reference_manual]	5407521	\N	\N	sequence	7	SO	genome	bipartite_duplication
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000149	"An interchromosomal mutation whereby the (large) region between the first two breaks listed is lost, and the two flanking segments (one of them centric) are joined as a translocation to the free ends resulting from the third break." [FB:reference_manual]	6146701	\N	\N	sequence	8	SO	sequence_collection	bipartite_duplication
SO:1000150	\N	\N	"A chromosomal translocation whereby three breaks occurred in three different chromosomes. The centric segment resulting from the first break listed is joined to the acentric segment resulting from the second, rather than the third." [FB:reference_manual]	SO:1000150	"A chromosomal translocation whereby three breaks occurred in three different chromosomes. The centric segment resulting from the first break listed is joined to the acentric segment resulting from the second, rather than the third." [FB:reference_manual]	47138	\N	\N	sequence	0	SO	cyclic_translocation	cyclic_translocation
SO:0002060	SO:1000150	\N	"A translocation where the regions involved are from different chromosomes." [NCBI:th]	SO:1000150	"A chromosomal translocation whereby three breaks occurred in three different chromosomes. The centric segment resulting from the first break listed is joined to the acentric segment resulting from the second, rather than the third." [FB:reference_manual]	491966	\N	\N	sequence	1	SO	interchromosomal_translocation	cyclic_translocation
SO:1000044	SO:0002060	\N	"A chromosomal mutation. Rearrangements that alter the pairing of telomeres are classified as translocations." [FB:reference_manual]	SO:1000150	"A chromosomal translocation whereby three breaks occurred in three different chromosomes. The centric segment resulting from the first break listed is joined to the acentric segment resulting from the second, rather than the third." [FB:reference_manual]	1074670	\N	\N	sequence	2	SO	chromosomal_translocation	cyclic_translocation
SO:0000199	SO:1000044	\N	"A region of nucleotide sequence that has translocated to a new position. The observed adjacency of two previously separated regions." [NCBI:th, SO:ke]	SO:1000150	"A chromosomal translocation whereby three breaks occurred in three different chromosomes. The centric segment resulting from the first break listed is joined to the acentric segment resulting from the second, rather than the third." [FB:reference_manual]	1905854	\N	DBVAR	sequence	3	SO	translocation	cyclic_translocation
SO:1000031	SO:1000044	\N	"A chromosomal structure variation whereby more than one chromosome is involved." [SO:ke]	SO:1000150	"A chromosomal translocation whereby three breaks occurred in three different chromosomes. The centric segment resulting from the first break listed is joined to the acentric segment resulting from the second, rather than the third." [FB:reference_manual]	1905855	\N	\N	sequence	3	SO	interchromosomal_mutation	cyclic_translocation
SO:0001785	SO:0000199	\N	"" []	SO:1000150	"A chromosomal translocation whereby three breaks occurred in three different chromosomes. The centric segment resulting from the first break listed is joined to the acentric segment resulting from the second, rather than the third." [FB:reference_manual]	2930296	DBVAR	DBVAR	sequence	4	SO	structural_alteration	cyclic_translocation
SO:1000183	SO:1000031	\N	"" []	SO:1000150	"A chromosomal translocation whereby three breaks occurred in three different chromosomes. The centric segment resulting from the first break listed is joined to the acentric segment resulting from the second, rather than the third." [FB:reference_manual]	2930297	\N	\N	sequence	4	SO	chromosome_structure_variation	cyclic_translocation
SO:0001059	SO:0001785	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000150	"A chromosomal translocation whereby three breaks occurred in three different chromosomes. The centric segment resulting from the first break listed is joined to the acentric segment resulting from the second, rather than the third." [FB:reference_manual]	4003279	DBVAR	SOFA	sequence	5	SO	sequence_alteration	cyclic_translocation
SO:0000240	SO:1000183	\N	"" []	SO:1000150	"A chromosomal translocation whereby three breaks occurred in three different chromosomes. The centric segment resulting from the first break listed is joined to the acentric segment resulting from the second, rather than the third." [FB:reference_manual]	4003280	\N	\N	sequence	5	SO	chromosome_variation	cyclic_translocation
SO:0002072	SO:0001059	\N	"" []	SO:1000150	"A chromosomal translocation whereby three breaks occurred in three different chromosomes. The centric segment resulting from the first break listed is joined to the acentric segment resulting from the second, rather than the third." [FB:reference_manual]	4967377	SOFA	\N	sequence	6	SO	sequence_comparison	cyclic_translocation
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000150	"A chromosomal translocation whereby three breaks occurred in three different chromosomes. The centric segment resulting from the first break listed is joined to the acentric segment resulting from the second, rather than the third." [FB:reference_manual]	4967378	\N	\N	sequence	6	SO	variant_collection	cyclic_translocation
SO:0001524	SO:0000240	\N	"" []	SO:1000150	"A chromosomal translocation whereby three breaks occurred in three different chromosomes. The centric segment resulting from the first break listed is joined to the acentric segment resulting from the second, rather than the third." [FB:reference_manual]	4967379	\N	\N	sequence	6	SO	chromosomally_aberrant_genome	cyclic_translocation
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000150	"A chromosomal translocation whereby three breaks occurred in three different chromosomes. The centric segment resulting from the first break listed is joined to the acentric segment resulting from the second, rather than the third." [FB:reference_manual]	5741783	\N	SOFA	sequence	7	SO	sequence_feature	cyclic_translocation
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000150	"A chromosomal translocation whereby three breaks occurred in three different chromosomes. The centric segment resulting from the first break listed is joined to the acentric segment resulting from the second, rather than the third." [FB:reference_manual]	5741784	\N	\N	sequence	7	SO	sequence_collection	cyclic_translocation
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000150	"A chromosomal translocation whereby three breaks occurred in three different chromosomes. The centric segment resulting from the first break listed is joined to the acentric segment resulting from the second, rather than the third." [FB:reference_manual]	5741785	\N	\N	sequence	7	SO	variant_genome	cyclic_translocation
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000150	"A chromosomal translocation whereby three breaks occurred in three different chromosomes. The centric segment resulting from the first break listed is joined to the acentric segment resulting from the second, rather than the third." [FB:reference_manual]	6311371	\N	\N	sequence	8	SO	genome	cyclic_translocation
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000150	"A chromosomal translocation whereby three breaks occurred in three different chromosomes. The centric segment resulting from the first break listed is joined to the acentric segment resulting from the second, rather than the third." [FB:reference_manual]	6699561	\N	\N	sequence	9	SO	sequence_collection	cyclic_translocation
SO:1000151	\N	\N	"A chromosomal inversion caused by three breaks in the same chromosome; both central segments are inverted in place (i.e., they are not transposed)." [FB:reference_manual]	SO:1000151	"A chromosomal inversion caused by three breaks in the same chromosome; both central segments are inverted in place (i.e., they are not transposed)." [FB:reference_manual]	47139	\N	\N	sequence	0	SO	bipartite_inversion	bipartite_inversion
SO:1000030	SO:1000151	\N	"An interchromosomal mutation where a region of the chromosome is inverted with respect to wild type." [SO:ke]	SO:1000151	"A chromosomal inversion caused by three breaks in the same chromosome; both central segments are inverted in place (i.e., they are not transposed)." [FB:reference_manual]	491967	\N	\N	sequence	1	SO	chromosomal_inversion	bipartite_inversion
SO:1000028	SO:1000030	\N	"A chromosomal structure variation within a single chromosome." [SO:ke]	SO:1000151	"A chromosomal inversion caused by three breaks in the same chromosome; both central segments are inverted in place (i.e., they are not transposed)." [FB:reference_manual]	1074671	\N	\N	sequence	2	SO	intrachromosomal_mutation	bipartite_inversion
SO:1000183	SO:1000028	\N	"" []	SO:1000151	"A chromosomal inversion caused by three breaks in the same chromosome; both central segments are inverted in place (i.e., they are not transposed)." [FB:reference_manual]	1905856	\N	\N	sequence	3	SO	chromosome_structure_variation	bipartite_inversion
SO:0000240	SO:1000183	\N	"" []	SO:1000151	"A chromosomal inversion caused by three breaks in the same chromosome; both central segments are inverted in place (i.e., they are not transposed)." [FB:reference_manual]	2930298	\N	\N	sequence	4	SO	chromosome_variation	bipartite_inversion
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000151	"A chromosomal inversion caused by three breaks in the same chromosome; both central segments are inverted in place (i.e., they are not transposed)." [FB:reference_manual]	4003281	\N	\N	sequence	5	SO	variant_collection	bipartite_inversion
SO:0001524	SO:0000240	\N	"" []	SO:1000151	"A chromosomal inversion caused by three breaks in the same chromosome; both central segments are inverted in place (i.e., they are not transposed)." [FB:reference_manual]	4003282	\N	\N	sequence	5	SO	chromosomally_aberrant_genome	bipartite_inversion
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000151	"A chromosomal inversion caused by three breaks in the same chromosome; both central segments are inverted in place (i.e., they are not transposed)." [FB:reference_manual]	4967380	\N	\N	sequence	6	SO	sequence_collection	bipartite_inversion
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000151	"A chromosomal inversion caused by three breaks in the same chromosome; both central segments are inverted in place (i.e., they are not transposed)." [FB:reference_manual]	4967381	\N	\N	sequence	6	SO	variant_genome	bipartite_inversion
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000151	"A chromosomal inversion caused by three breaks in the same chromosome; both central segments are inverted in place (i.e., they are not transposed)." [FB:reference_manual]	5741786	\N	\N	sequence	7	SO	genome	bipartite_inversion
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000151	"A chromosomal inversion caused by three breaks in the same chromosome; both central segments are inverted in place (i.e., they are not transposed)." [FB:reference_manual]	6311372	\N	\N	sequence	8	SO	sequence_collection	bipartite_inversion
SO:1000152	\N	\N	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	SO:1000152	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	47140	\N	\N	sequence	0	SO	uninverted_insertional_duplication	uninverted_insertional_duplication
SO:1000154	SO:1000152	\N	"A chromosome duplication involving the insertion of a duplicated region (as opposed to a free duplication)." [SO:ke]	SO:1000152	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	491968	\N	\N	sequence	1	SO	insertional_duplication	uninverted_insertional_duplication
SO:1000037	SO:1000154	\N	"An extra chromosome." [SO:ke]	SO:1000152	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	1074672	\N	\N	sequence	2	SO	chromosomal_duplication	uninverted_insertional_duplication
SO:1000183	SO:1000037	\N	"" []	SO:1000152	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	1905857	\N	\N	sequence	3	SO	chromosome_structure_variation	uninverted_insertional_duplication
SO:0000240	SO:1000183	\N	"" []	SO:1000152	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	2930299	\N	\N	sequence	4	SO	chromosome_variation	uninverted_insertional_duplication
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000152	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	4003283	\N	\N	sequence	5	SO	variant_collection	uninverted_insertional_duplication
SO:0001524	SO:0000240	\N	"" []	SO:1000152	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	4003284	\N	\N	sequence	5	SO	chromosomally_aberrant_genome	uninverted_insertional_duplication
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000152	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	4967382	\N	\N	sequence	6	SO	sequence_collection	uninverted_insertional_duplication
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000152	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	4967383	\N	\N	sequence	6	SO	variant_genome	uninverted_insertional_duplication
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000152	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	5741787	\N	\N	sequence	7	SO	genome	uninverted_insertional_duplication
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000152	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	6311373	\N	\N	sequence	8	SO	sequence_collection	uninverted_insertional_duplication
SO:1000153	\N	\N	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	SO:1000153	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	47141	\N	\N	sequence	0	SO	inverted_insertional_duplication	inverted_insertional_duplication
SO:1000154	SO:1000153	\N	"A chromosome duplication involving the insertion of a duplicated region (as opposed to a free duplication)." [SO:ke]	SO:1000153	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	491969	\N	\N	sequence	1	SO	insertional_duplication	inverted_insertional_duplication
SO:1000037	SO:1000154	\N	"An extra chromosome." [SO:ke]	SO:1000153	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	1074673	\N	\N	sequence	2	SO	chromosomal_duplication	inverted_insertional_duplication
SO:1000183	SO:1000037	\N	"" []	SO:1000153	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	1905858	\N	\N	sequence	3	SO	chromosome_structure_variation	inverted_insertional_duplication
SO:0000240	SO:1000183	\N	"" []	SO:1000153	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	2930300	\N	\N	sequence	4	SO	chromosome_variation	inverted_insertional_duplication
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000153	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	4003285	\N	\N	sequence	5	SO	variant_collection	inverted_insertional_duplication
SO:0001524	SO:0000240	\N	"" []	SO:1000153	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	4003286	\N	\N	sequence	5	SO	chromosomally_aberrant_genome	inverted_insertional_duplication
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000153	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	4967384	\N	\N	sequence	6	SO	sequence_collection	inverted_insertional_duplication
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000153	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	4967385	\N	\N	sequence	6	SO	variant_genome	inverted_insertional_duplication
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000153	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	5741788	\N	\N	sequence	7	SO	genome	inverted_insertional_duplication
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000153	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	6311374	\N	\N	sequence	8	SO	sequence_collection	inverted_insertional_duplication
SO:1000154	\N	\N	"A chromosome duplication involving the insertion of a duplicated region (as opposed to a free duplication)." [SO:ke]	SO:1000154	"A chromosome duplication involving the insertion of a duplicated region (as opposed to a free duplication)." [SO:ke]	47142	\N	\N	sequence	0	SO	insertional_duplication	insertional_duplication
SO:1000037	SO:1000154	\N	"An extra chromosome." [SO:ke]	SO:1000154	"A chromosome duplication involving the insertion of a duplicated region (as opposed to a free duplication)." [SO:ke]	491970	\N	\N	sequence	1	SO	chromosomal_duplication	insertional_duplication
SO:1000183	SO:1000037	\N	"" []	SO:1000154	"A chromosome duplication involving the insertion of a duplicated region (as opposed to a free duplication)." [SO:ke]	1074674	\N	\N	sequence	2	SO	chromosome_structure_variation	insertional_duplication
SO:0000240	SO:1000183	\N	"" []	SO:1000154	"A chromosome duplication involving the insertion of a duplicated region (as opposed to a free duplication)." [SO:ke]	1905859	\N	\N	sequence	3	SO	chromosome_variation	insertional_duplication
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000154	"A chromosome duplication involving the insertion of a duplicated region (as opposed to a free duplication)." [SO:ke]	2930301	\N	\N	sequence	4	SO	variant_collection	insertional_duplication
SO:0001524	SO:0000240	\N	"" []	SO:1000154	"A chromosome duplication involving the insertion of a duplicated region (as opposed to a free duplication)." [SO:ke]	2930302	\N	\N	sequence	4	SO	chromosomally_aberrant_genome	insertional_duplication
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000154	"A chromosome duplication involving the insertion of a duplicated region (as opposed to a free duplication)." [SO:ke]	4003287	\N	\N	sequence	5	SO	sequence_collection	insertional_duplication
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000154	"A chromosome duplication involving the insertion of a duplicated region (as opposed to a free duplication)." [SO:ke]	4003288	\N	\N	sequence	5	SO	variant_genome	insertional_duplication
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000154	"A chromosome duplication involving the insertion of a duplicated region (as opposed to a free duplication)." [SO:ke]	4967386	\N	\N	sequence	6	SO	genome	insertional_duplication
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000154	"A chromosome duplication involving the insertion of a duplicated region (as opposed to a free duplication)." [SO:ke]	5741789	\N	\N	sequence	7	SO	sequence_collection	insertional_duplication
SO:1000155	\N	\N	"A chromosome structure variation whereby a transposition occurred between chromosomes." [SO:ke]	SO:1000155	"A chromosome structure variation whereby a transposition occurred between chromosomes." [SO:ke]	47143	\N	\N	sequence	0	SO	interchromosomal_transposition	interchromosomal_transposition
SO:0000453	SO:1000155	\N	"A chromosome structure variant whereby a region of a chromosome has been transferred to another position. Among interchromosomal rearrangements, the term transposition is reserved for that class in which the telomeres of the chromosomes involved are coupled (that is to say, form the two ends of a single DNA molecule) as in wild-type." [FB:reference_manual, SO:ke]	SO:1000155	"A chromosome structure variation whereby a transposition occurred between chromosomes." [SO:ke]	491971	\N	\N	sequence	1	SO	chromosomal_transposition	interchromosomal_transposition
SO:1000031	SO:1000155	\N	"A chromosomal structure variation whereby more than one chromosome is involved." [SO:ke]	SO:1000155	"A chromosome structure variation whereby a transposition occurred between chromosomes." [SO:ke]	491972	\N	\N	sequence	1	SO	interchromosomal_mutation	interchromosomal_transposition
SO:1000183	SO:0000453	\N	"" []	SO:1000155	"A chromosome structure variation whereby a transposition occurred between chromosomes." [SO:ke]	1074675	\N	\N	sequence	2	SO	chromosome_structure_variation	interchromosomal_transposition
SO:1000183	SO:1000031	\N	"" []	SO:1000155	"A chromosome structure variation whereby a transposition occurred between chromosomes." [SO:ke]	1074676	\N	\N	sequence	2	SO	chromosome_structure_variation	interchromosomal_transposition
SO:0000240	SO:1000183	\N	"" []	SO:1000155	"A chromosome structure variation whereby a transposition occurred between chromosomes." [SO:ke]	1905860	\N	\N	sequence	3	SO	chromosome_variation	interchromosomal_transposition
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000155	"A chromosome structure variation whereby a transposition occurred between chromosomes." [SO:ke]	2930303	\N	\N	sequence	4	SO	variant_collection	interchromosomal_transposition
SO:0001524	SO:0000240	\N	"" []	SO:1000155	"A chromosome structure variation whereby a transposition occurred between chromosomes." [SO:ke]	2930304	\N	\N	sequence	4	SO	chromosomally_aberrant_genome	interchromosomal_transposition
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000155	"A chromosome structure variation whereby a transposition occurred between chromosomes." [SO:ke]	4003289	\N	\N	sequence	5	SO	sequence_collection	interchromosomal_transposition
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000155	"A chromosome structure variation whereby a transposition occurred between chromosomes." [SO:ke]	4003290	\N	\N	sequence	5	SO	variant_genome	interchromosomal_transposition
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000155	"A chromosome structure variation whereby a transposition occurred between chromosomes." [SO:ke]	4967387	\N	\N	sequence	6	SO	genome	interchromosomal_transposition
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000155	"A chromosome structure variation whereby a transposition occurred between chromosomes." [SO:ke]	5741790	\N	\N	sequence	7	SO	sequence_collection	interchromosomal_transposition
SO:1000156	\N	\N	"An interchromosomal transposition whereby a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segment." [FB:reference_manual]	SO:1000156	"An interchromosomal transposition whereby a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segment." [FB:reference_manual]	47144	\N	\N	sequence	0	SO	inverted_interchromosomal_transposition	inverted_interchromosomal_transposition
SO:1000155	SO:1000156	\N	"A chromosome structure variation whereby a transposition occurred between chromosomes." [SO:ke]	SO:1000156	"An interchromosomal transposition whereby a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segment." [FB:reference_manual]	491973	\N	\N	sequence	1	SO	interchromosomal_transposition	inverted_interchromosomal_transposition
SO:0000453	SO:1000155	\N	"A chromosome structure variant whereby a region of a chromosome has been transferred to another position. Among interchromosomal rearrangements, the term transposition is reserved for that class in which the telomeres of the chromosomes involved are coupled (that is to say, form the two ends of a single DNA molecule) as in wild-type." [FB:reference_manual, SO:ke]	SO:1000156	"An interchromosomal transposition whereby a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segment." [FB:reference_manual]	1074677	\N	\N	sequence	2	SO	chromosomal_transposition	inverted_interchromosomal_transposition
SO:1000031	SO:1000155	\N	"A chromosomal structure variation whereby more than one chromosome is involved." [SO:ke]	SO:1000156	"An interchromosomal transposition whereby a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segment." [FB:reference_manual]	1074678	\N	\N	sequence	2	SO	interchromosomal_mutation	inverted_interchromosomal_transposition
SO:1000183	SO:0000453	\N	"" []	SO:1000156	"An interchromosomal transposition whereby a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segment." [FB:reference_manual]	1905861	\N	\N	sequence	3	SO	chromosome_structure_variation	inverted_interchromosomal_transposition
SO:1000183	SO:1000031	\N	"" []	SO:1000156	"An interchromosomal transposition whereby a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segment." [FB:reference_manual]	1905862	\N	\N	sequence	3	SO	chromosome_structure_variation	inverted_interchromosomal_transposition
SO:0000240	SO:1000183	\N	"" []	SO:1000156	"An interchromosomal transposition whereby a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segment." [FB:reference_manual]	2930305	\N	\N	sequence	4	SO	chromosome_variation	inverted_interchromosomal_transposition
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000156	"An interchromosomal transposition whereby a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segment." [FB:reference_manual]	4003291	\N	\N	sequence	5	SO	variant_collection	inverted_interchromosomal_transposition
SO:0001524	SO:0000240	\N	"" []	SO:1000156	"An interchromosomal transposition whereby a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segment." [FB:reference_manual]	4003292	\N	\N	sequence	5	SO	chromosomally_aberrant_genome	inverted_interchromosomal_transposition
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000156	"An interchromosomal transposition whereby a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segment." [FB:reference_manual]	4967388	\N	\N	sequence	6	SO	sequence_collection	inverted_interchromosomal_transposition
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000156	"An interchromosomal transposition whereby a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segment." [FB:reference_manual]	4967389	\N	\N	sequence	6	SO	variant_genome	inverted_interchromosomal_transposition
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000156	"An interchromosomal transposition whereby a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segment." [FB:reference_manual]	5741791	\N	\N	sequence	7	SO	genome	inverted_interchromosomal_transposition
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000156	"An interchromosomal transposition whereby a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segment." [FB:reference_manual]	6311375	\N	\N	sequence	8	SO	sequence_collection	inverted_interchromosomal_transposition
SO:1000157	\N	\N	"An interchromosomal transition where the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	SO:1000157	"An interchromosomal transition where the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	47145	\N	\N	sequence	0	SO	uninverted_interchromosomal_transposition	uninverted_interchromosomal_transposition
SO:1000155	SO:1000157	\N	"A chromosome structure variation whereby a transposition occurred between chromosomes." [SO:ke]	SO:1000157	"An interchromosomal transition where the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	491974	\N	\N	sequence	1	SO	interchromosomal_transposition	uninverted_interchromosomal_transposition
SO:0000453	SO:1000155	\N	"A chromosome structure variant whereby a region of a chromosome has been transferred to another position. Among interchromosomal rearrangements, the term transposition is reserved for that class in which the telomeres of the chromosomes involved are coupled (that is to say, form the two ends of a single DNA molecule) as in wild-type." [FB:reference_manual, SO:ke]	SO:1000157	"An interchromosomal transition where the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	1074679	\N	\N	sequence	2	SO	chromosomal_transposition	uninverted_interchromosomal_transposition
SO:1000031	SO:1000155	\N	"A chromosomal structure variation whereby more than one chromosome is involved." [SO:ke]	SO:1000157	"An interchromosomal transition where the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	1074680	\N	\N	sequence	2	SO	interchromosomal_mutation	uninverted_interchromosomal_transposition
SO:1000183	SO:0000453	\N	"" []	SO:1000157	"An interchromosomal transition where the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	1905863	\N	\N	sequence	3	SO	chromosome_structure_variation	uninverted_interchromosomal_transposition
SO:1000183	SO:1000031	\N	"" []	SO:1000157	"An interchromosomal transition where the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	1905864	\N	\N	sequence	3	SO	chromosome_structure_variation	uninverted_interchromosomal_transposition
SO:0000240	SO:1000183	\N	"" []	SO:1000157	"An interchromosomal transition where the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	2930306	\N	\N	sequence	4	SO	chromosome_variation	uninverted_interchromosomal_transposition
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000157	"An interchromosomal transition where the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	4003293	\N	\N	sequence	5	SO	variant_collection	uninverted_interchromosomal_transposition
SO:0001524	SO:0000240	\N	"" []	SO:1000157	"An interchromosomal transition where the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	4003294	\N	\N	sequence	5	SO	chromosomally_aberrant_genome	uninverted_interchromosomal_transposition
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000157	"An interchromosomal transition where the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	4967390	\N	\N	sequence	6	SO	sequence_collection	uninverted_interchromosomal_transposition
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000157	"An interchromosomal transition where the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	4967391	\N	\N	sequence	6	SO	variant_genome	uninverted_interchromosomal_transposition
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000157	"An interchromosomal transition where the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	5741792	\N	\N	sequence	7	SO	genome	uninverted_interchromosomal_transposition
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000157	"An interchromosomal transition where the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	6311376	\N	\N	sequence	8	SO	sequence_collection	uninverted_interchromosomal_transposition
SO:1000158	\N	\N	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	SO:1000158	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	47146	\N	\N	sequence	0	SO	inverted_intrachromosomal_transposition	inverted_intrachromosomal_transposition
SO:1000148	SO:1000158	\N	"A chromosomal translocation whereby the first two breaks are in the same chromosome, and the region between them is rejoined in inverted order to the other side of the first break, such that both sides of break one are present on the same chromosome. The remaining free ends are joined as a translocation with those resulting from the third break." [FB:reference_manual]	SO:1000158	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	491975	\N	\N	sequence	1	SO	inversion_cum_translocation	inverted_intrachromosomal_transposition
SO:1000030	SO:1000148	\N	"An interchromosomal mutation where a region of the chromosome is inverted with respect to wild type." [SO:ke]	SO:1000158	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	1074681	\N	\N	sequence	2	SO	chromosomal_inversion	inverted_intrachromosomal_transposition
SO:1000044	SO:1000148	\N	"A chromosomal mutation. Rearrangements that alter the pairing of telomeres are classified as translocations." [FB:reference_manual]	SO:1000158	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	1074682	\N	\N	sequence	2	SO	chromosomal_translocation	inverted_intrachromosomal_transposition
SO:1000028	SO:1000030	\N	"A chromosomal structure variation within a single chromosome." [SO:ke]	SO:1000158	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	1905865	\N	\N	sequence	3	SO	intrachromosomal_mutation	inverted_intrachromosomal_transposition
SO:0000199	SO:1000044	\N	"A region of nucleotide sequence that has translocated to a new position. The observed adjacency of two previously separated regions." [NCBI:th, SO:ke]	SO:1000158	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	1905866	\N	DBVAR	sequence	3	SO	translocation	inverted_intrachromosomal_transposition
SO:1000031	SO:1000044	\N	"A chromosomal structure variation whereby more than one chromosome is involved." [SO:ke]	SO:1000158	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	1905867	\N	\N	sequence	3	SO	interchromosomal_mutation	inverted_intrachromosomal_transposition
SO:1000183	SO:1000028	\N	"" []	SO:1000158	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	2930307	\N	\N	sequence	4	SO	chromosome_structure_variation	inverted_intrachromosomal_transposition
SO:0001785	SO:0000199	\N	"" []	SO:1000158	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	2930308	DBVAR	DBVAR	sequence	4	SO	structural_alteration	inverted_intrachromosomal_transposition
SO:1000183	SO:1000031	\N	"" []	SO:1000158	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	2930309	\N	\N	sequence	4	SO	chromosome_structure_variation	inverted_intrachromosomal_transposition
SO:0000240	SO:1000183	\N	"" []	SO:1000158	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	4003295	\N	\N	sequence	5	SO	chromosome_variation	inverted_intrachromosomal_transposition
SO:0001059	SO:0001785	\N	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000158	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	4003296	DBVAR	SOFA	sequence	5	SO	sequence_alteration	inverted_intrachromosomal_transposition
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000158	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	4967392	\N	\N	sequence	6	SO	variant_collection	inverted_intrachromosomal_transposition
SO:0001524	SO:0000240	\N	"" []	SO:1000158	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	4967393	\N	\N	sequence	6	SO	chromosomally_aberrant_genome	inverted_intrachromosomal_transposition
SO:0002072	SO:0001059	\N	"" []	SO:1000158	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	4967394	SOFA	\N	sequence	6	SO	sequence_comparison	inverted_intrachromosomal_transposition
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000158	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	5741793	\N	\N	sequence	7	SO	sequence_collection	inverted_intrachromosomal_transposition
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000158	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	5741794	\N	\N	sequence	7	SO	variant_genome	inverted_intrachromosomal_transposition
SO:0000110	SO:0002072	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000158	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	5741795	\N	SOFA	sequence	7	SO	sequence_feature	inverted_intrachromosomal_transposition
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000158	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	6311377	\N	\N	sequence	8	SO	genome	inverted_intrachromosomal_transposition
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000158	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments." [FB:reference_manual]	6699562	\N	\N	sequence	9	SO	sequence_collection	inverted_intrachromosomal_transposition
SO:1000159	\N	\N	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	SO:1000159	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	47147	\N	\N	sequence	0	SO	uninverted_intrachromosomal_transposition	uninverted_intrachromosomal_transposition
SO:1000041	SO:1000159	\N	"A chromosome structure variation whereby a transposition occurred within a chromosome." [SO:ke]	SO:1000159	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	491976	\N	\N	sequence	1	SO	intrachromosomal_transposition	uninverted_intrachromosomal_transposition
SO:0000453	SO:1000041	\N	"A chromosome structure variant whereby a region of a chromosome has been transferred to another position. Among interchromosomal rearrangements, the term transposition is reserved for that class in which the telomeres of the chromosomes involved are coupled (that is to say, form the two ends of a single DNA molecule) as in wild-type." [FB:reference_manual, SO:ke]	SO:1000159	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	1074683	\N	\N	sequence	2	SO	chromosomal_transposition	uninverted_intrachromosomal_transposition
SO:1000038	SO:1000041	\N	"A duplication that occurred within a chromosome." [SO:ke]	SO:1000159	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	1074684	\N	\N	sequence	2	SO	intrachromosomal_duplication	uninverted_intrachromosomal_transposition
SO:1000183	SO:0000453	\N	"" []	SO:1000159	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	1905868	\N	\N	sequence	3	SO	chromosome_structure_variation	uninverted_intrachromosomal_transposition
SO:1000028	SO:1000038	\N	"A chromosomal structure variation within a single chromosome." [SO:ke]	SO:1000159	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	1905869	\N	\N	sequence	3	SO	intrachromosomal_mutation	uninverted_intrachromosomal_transposition
SO:1000037	SO:1000038	\N	"An extra chromosome." [SO:ke]	SO:1000159	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	1905870	\N	\N	sequence	3	SO	chromosomal_duplication	uninverted_intrachromosomal_transposition
SO:0000240	SO:1000183	\N	"" []	SO:1000159	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	4003299	\N	\N	sequence	5	SO	chromosome_variation	uninverted_intrachromosomal_transposition
SO:1000183	SO:1000028	\N	"" []	SO:1000159	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	2930311	\N	\N	sequence	4	SO	chromosome_structure_variation	uninverted_intrachromosomal_transposition
SO:1000183	SO:1000037	\N	"" []	SO:1000159	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	2930312	\N	\N	sequence	4	SO	chromosome_structure_variation	uninverted_intrachromosomal_transposition
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000159	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	4385905	\N	\N	sequence	6	SO	variant_collection	uninverted_intrachromosomal_transposition
SO:0001524	SO:0000240	\N	"" []	SO:1000159	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	4385906	\N	\N	sequence	6	SO	chromosomally_aberrant_genome	uninverted_intrachromosomal_transposition
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000159	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	5407522	\N	\N	sequence	7	SO	sequence_collection	uninverted_intrachromosomal_transposition
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000159	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	5407523	\N	\N	sequence	7	SO	variant_genome	uninverted_intrachromosomal_transposition
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000159	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	6146702	\N	\N	sequence	8	SO	genome	uninverted_intrachromosomal_transposition
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000159	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the insertion is in cytologically the same orientation as its flanking segments." [FB:reference_manual]	6631424	\N	\N	sequence	9	SO	sequence_collection	uninverted_intrachromosomal_transposition
SO:1000160	\N	\N	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	SO:1000160	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	47148	\N	\N	sequence	0	SO	unoriented_insertional_duplication	unoriented_insertional_duplication
SO:1000154	SO:1000160	\N	"A chromosome duplication involving the insertion of a duplicated region (as opposed to a free duplication)." [SO:ke]	SO:1000160	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	491977	\N	\N	sequence	1	SO	insertional_duplication	unoriented_insertional_duplication
SO:1000037	SO:1000154	\N	"An extra chromosome." [SO:ke]	SO:1000160	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	1074685	\N	\N	sequence	2	SO	chromosomal_duplication	unoriented_insertional_duplication
SO:1000183	SO:1000037	\N	"" []	SO:1000160	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	1905871	\N	\N	sequence	3	SO	chromosome_structure_variation	unoriented_insertional_duplication
SO:0000240	SO:1000183	\N	"" []	SO:1000160	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	2930313	\N	\N	sequence	4	SO	chromosome_variation	unoriented_insertional_duplication
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000160	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	4003300	\N	\N	sequence	5	SO	variant_collection	unoriented_insertional_duplication
SO:0001524	SO:0000240	\N	"" []	SO:1000160	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	4003301	\N	\N	sequence	5	SO	chromosomally_aberrant_genome	unoriented_insertional_duplication
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000160	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	4967397	\N	\N	sequence	6	SO	sequence_collection	unoriented_insertional_duplication
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000160	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	4967398	\N	\N	sequence	6	SO	variant_genome	unoriented_insertional_duplication
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000160	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	5741797	\N	\N	sequence	7	SO	genome	unoriented_insertional_duplication
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000160	"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	6311379	\N	\N	sequence	8	SO	sequence_collection	unoriented_insertional_duplication
SO:1000161	\N	\N	"An interchromosomal transposition whereby a copy of the segment between the first two breaks listed is inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	SO:1000161	"An interchromosomal transposition whereby a copy of the segment between the first two breaks listed is inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	47149	\N	\N	sequence	0	SO	unoriented_interchromosomal_transposition	unoriented_interchromosomal_transposition
SO:1000155	SO:1000161	\N	"A chromosome structure variation whereby a transposition occurred between chromosomes." [SO:ke]	SO:1000161	"An interchromosomal transposition whereby a copy of the segment between the first two breaks listed is inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	491978	\N	\N	sequence	1	SO	interchromosomal_transposition	unoriented_interchromosomal_transposition
SO:0000453	SO:1000155	\N	"A chromosome structure variant whereby a region of a chromosome has been transferred to another position. Among interchromosomal rearrangements, the term transposition is reserved for that class in which the telomeres of the chromosomes involved are coupled (that is to say, form the two ends of a single DNA molecule) as in wild-type." [FB:reference_manual, SO:ke]	SO:1000161	"An interchromosomal transposition whereby a copy of the segment between the first two breaks listed is inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	1074686	\N	\N	sequence	2	SO	chromosomal_transposition	unoriented_interchromosomal_transposition
SO:1000031	SO:1000155	\N	"A chromosomal structure variation whereby more than one chromosome is involved." [SO:ke]	SO:1000161	"An interchromosomal transposition whereby a copy of the segment between the first two breaks listed is inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	1074687	\N	\N	sequence	2	SO	interchromosomal_mutation	unoriented_interchromosomal_transposition
SO:1000183	SO:0000453	\N	"" []	SO:1000161	"An interchromosomal transposition whereby a copy of the segment between the first two breaks listed is inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	1905872	\N	\N	sequence	3	SO	chromosome_structure_variation	unoriented_interchromosomal_transposition
SO:1000183	SO:1000031	\N	"" []	SO:1000161	"An interchromosomal transposition whereby a copy of the segment between the first two breaks listed is inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	1905873	\N	\N	sequence	3	SO	chromosome_structure_variation	unoriented_interchromosomal_transposition
SO:0000240	SO:1000183	\N	"" []	SO:1000161	"An interchromosomal transposition whereby a copy of the segment between the first two breaks listed is inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	2930314	\N	\N	sequence	4	SO	chromosome_variation	unoriented_interchromosomal_transposition
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000161	"An interchromosomal transposition whereby a copy of the segment between the first two breaks listed is inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	4003302	\N	\N	sequence	5	SO	variant_collection	unoriented_interchromosomal_transposition
SO:0001524	SO:0000240	\N	"" []	SO:1000161	"An interchromosomal transposition whereby a copy of the segment between the first two breaks listed is inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	4003303	\N	\N	sequence	5	SO	chromosomally_aberrant_genome	unoriented_interchromosomal_transposition
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000161	"An interchromosomal transposition whereby a copy of the segment between the first two breaks listed is inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	4967399	\N	\N	sequence	6	SO	sequence_collection	unoriented_interchromosomal_transposition
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000161	"An interchromosomal transposition whereby a copy of the segment between the first two breaks listed is inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	4967400	\N	\N	sequence	6	SO	variant_genome	unoriented_interchromosomal_transposition
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000161	"An interchromosomal transposition whereby a copy of the segment between the first two breaks listed is inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	5741798	\N	\N	sequence	7	SO	genome	unoriented_interchromosomal_transposition
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000161	"An interchromosomal transposition whereby a copy of the segment between the first two breaks listed is inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	6311380	\N	\N	sequence	8	SO	sequence_collection	unoriented_interchromosomal_transposition
SO:1000162	\N	\N	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	SO:1000162	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	47150	\N	\N	sequence	0	SO	unoriented_intrachromosomal_transposition	unoriented_intrachromosomal_transposition
SO:1000041	SO:1000162	\N	"A chromosome structure variation whereby a transposition occurred within a chromosome." [SO:ke]	SO:1000162	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	491979	\N	\N	sequence	1	SO	intrachromosomal_transposition	unoriented_intrachromosomal_transposition
SO:0000453	SO:1000041	\N	"A chromosome structure variant whereby a region of a chromosome has been transferred to another position. Among interchromosomal rearrangements, the term transposition is reserved for that class in which the telomeres of the chromosomes involved are coupled (that is to say, form the two ends of a single DNA molecule) as in wild-type." [FB:reference_manual, SO:ke]	SO:1000162	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	1074688	\N	\N	sequence	2	SO	chromosomal_transposition	unoriented_intrachromosomal_transposition
SO:1000038	SO:1000041	\N	"A duplication that occurred within a chromosome." [SO:ke]	SO:1000162	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	1074689	\N	\N	sequence	2	SO	intrachromosomal_duplication	unoriented_intrachromosomal_transposition
SO:1000183	SO:0000453	\N	"" []	SO:1000162	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	1905874	\N	\N	sequence	3	SO	chromosome_structure_variation	unoriented_intrachromosomal_transposition
SO:1000028	SO:1000038	\N	"A chromosomal structure variation within a single chromosome." [SO:ke]	SO:1000162	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	1905875	\N	\N	sequence	3	SO	intrachromosomal_mutation	unoriented_intrachromosomal_transposition
SO:1000037	SO:1000038	\N	"An extra chromosome." [SO:ke]	SO:1000162	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	1905876	\N	\N	sequence	3	SO	chromosomal_duplication	unoriented_intrachromosomal_transposition
SO:0000240	SO:1000183	\N	"" []	SO:1000162	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	4003306	\N	\N	sequence	5	SO	chromosome_variation	unoriented_intrachromosomal_transposition
SO:1000183	SO:1000028	\N	"" []	SO:1000162	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	2930316	\N	\N	sequence	4	SO	chromosome_structure_variation	unoriented_intrachromosomal_transposition
SO:1000183	SO:1000037	\N	"" []	SO:1000162	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	2930317	\N	\N	sequence	4	SO	chromosome_structure_variation	unoriented_intrachromosomal_transposition
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000162	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	4385907	\N	\N	sequence	6	SO	variant_collection	unoriented_intrachromosomal_transposition
SO:0001524	SO:0000240	\N	"" []	SO:1000162	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	4385908	\N	\N	sequence	6	SO	chromosomally_aberrant_genome	unoriented_intrachromosomal_transposition
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000162	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	5407524	\N	\N	sequence	7	SO	sequence_collection	unoriented_intrachromosomal_transposition
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000162	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	5407525	\N	\N	sequence	7	SO	variant_genome	unoriented_intrachromosomal_transposition
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000162	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	6146703	\N	\N	sequence	8	SO	genome	unoriented_intrachromosomal_transposition
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000162	"An intrachromosomal transposition whereby the segment between the first two breaks listed is removed and inserted at the third break; the orientation of the insertion with respect to its flanking segments is not recorded." [FB:reference_manual]	6631425	\N	\N	sequence	9	SO	sequence_collection	unoriented_intrachromosomal_transposition
SO:1000170	\N	\N	"" []	SO:1000170	"" []	47151	\N	\N	sequence	0	SO	uncharacterized_chromosomal_mutation	uncharacterized_chromosomal_mutation
SO:1000183	SO:1000170	\N	"" []	SO:1000170	"" []	491980	\N	\N	sequence	1	SO	chromosome_structure_variation	uncharacterized_chromosomal_mutation
SO:0000240	SO:1000183	\N	"" []	SO:1000170	"" []	1074690	\N	\N	sequence	2	SO	chromosome_variation	uncharacterized_chromosomal_mutation
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000170	"" []	1905877	\N	\N	sequence	3	SO	variant_collection	uncharacterized_chromosomal_mutation
SO:0001524	SO:0000240	\N	"" []	SO:1000170	"" []	1905878	\N	\N	sequence	3	SO	chromosomally_aberrant_genome	uncharacterized_chromosomal_mutation
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000170	"" []	2930318	\N	\N	sequence	4	SO	sequence_collection	uncharacterized_chromosomal_mutation
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000170	"" []	2930319	\N	\N	sequence	4	SO	variant_genome	uncharacterized_chromosomal_mutation
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000170	"" []	4003307	\N	\N	sequence	5	SO	genome	uncharacterized_chromosomal_mutation
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000170	"" []	4967403	\N	\N	sequence	6	SO	sequence_collection	uncharacterized_chromosomal_mutation
SO:1000171	\N	\N	"A chromosomal deletion whereby three breaks occur in the same chromosome; one central region is lost, and the other is inverted." [FB:reference_manual, SO:ke]	SO:1000171	"A chromosomal deletion whereby three breaks occur in the same chromosome; one central region is lost, and the other is inverted." [FB:reference_manual, SO:ke]	47152	\N	\N	sequence	0	SO	deficient_inversion	deficient_inversion
SO:1000029	SO:1000171	\N	"An incomplete chromosome." [SO:ke]	SO:1000171	"A chromosomal deletion whereby three breaks occur in the same chromosome; one central region is lost, and the other is inverted." [FB:reference_manual, SO:ke]	491981	\N	\N	sequence	1	SO	chromosomal_deletion	deficient_inversion
SO:1000030	SO:1000171	\N	"An interchromosomal mutation where a region of the chromosome is inverted with respect to wild type." [SO:ke]	SO:1000171	"A chromosomal deletion whereby three breaks occur in the same chromosome; one central region is lost, and the other is inverted." [FB:reference_manual, SO:ke]	491982	\N	\N	sequence	1	SO	chromosomal_inversion	deficient_inversion
SO:1000028	SO:1000029	\N	"A chromosomal structure variation within a single chromosome." [SO:ke]	SO:1000171	"A chromosomal deletion whereby three breaks occur in the same chromosome; one central region is lost, and the other is inverted." [FB:reference_manual, SO:ke]	1074691	\N	\N	sequence	2	SO	intrachromosomal_mutation	deficient_inversion
SO:1000028	SO:1000030	\N	"A chromosomal structure variation within a single chromosome." [SO:ke]	SO:1000171	"A chromosomal deletion whereby three breaks occur in the same chromosome; one central region is lost, and the other is inverted." [FB:reference_manual, SO:ke]	1074692	\N	\N	sequence	2	SO	intrachromosomal_mutation	deficient_inversion
SO:1000183	SO:1000028	\N	"" []	SO:1000171	"A chromosomal deletion whereby three breaks occur in the same chromosome; one central region is lost, and the other is inverted." [FB:reference_manual, SO:ke]	1905879	\N	\N	sequence	3	SO	chromosome_structure_variation	deficient_inversion
SO:0000240	SO:1000183	\N	"" []	SO:1000171	"A chromosomal deletion whereby three breaks occur in the same chromosome; one central region is lost, and the other is inverted." [FB:reference_manual, SO:ke]	2930320	\N	\N	sequence	4	SO	chromosome_variation	deficient_inversion
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000171	"A chromosomal deletion whereby three breaks occur in the same chromosome; one central region is lost, and the other is inverted." [FB:reference_manual, SO:ke]	4003308	\N	\N	sequence	5	SO	variant_collection	deficient_inversion
SO:0001524	SO:0000240	\N	"" []	SO:1000171	"A chromosomal deletion whereby three breaks occur in the same chromosome; one central region is lost, and the other is inverted." [FB:reference_manual, SO:ke]	4003309	\N	\N	sequence	5	SO	chromosomally_aberrant_genome	deficient_inversion
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000171	"A chromosomal deletion whereby three breaks occur in the same chromosome; one central region is lost, and the other is inverted." [FB:reference_manual, SO:ke]	4967404	\N	\N	sequence	6	SO	sequence_collection	deficient_inversion
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000171	"A chromosomal deletion whereby three breaks occur in the same chromosome; one central region is lost, and the other is inverted." [FB:reference_manual, SO:ke]	4967405	\N	\N	sequence	6	SO	variant_genome	deficient_inversion
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000171	"A chromosomal deletion whereby three breaks occur in the same chromosome; one central region is lost, and the other is inverted." [FB:reference_manual, SO:ke]	5741800	\N	\N	sequence	7	SO	genome	deficient_inversion
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000171	"A chromosomal deletion whereby three breaks occur in the same chromosome; one central region is lost, and the other is inverted." [FB:reference_manual, SO:ke]	6311382	\N	\N	sequence	8	SO	sequence_collection	deficient_inversion
SO:1000173	\N	DBVAR	"A duplication consisting of 2 identical adjacent regions." [SO:ke]	SO:1000173	"A duplication consisting of 2 identical adjacent regions." [SO:ke]	47153	\N	DBVAR	sequence	0	SO	tandem_duplication	tandem_duplication
SO:1000035	SO:1000173	DBVAR	"An insertion which derives from, or is identical in sequence to, nucleotides present at a known location in the genome." [EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html, NCBI:th]	SO:1000173	"A duplication consisting of 2 identical adjacent regions." [SO:ke]	491983	DBVAR	\N	sequence	1	SO	duplication	tandem_duplication
SO:0000667	SO:1000035	DBVAR	"The sequence of one or more nucleotides added between two adjacent nucleotides in the sequence." [SO:ke]	SO:1000173	"A duplication consisting of 2 identical adjacent regions." [SO:ke]	1074693	\N	DBVAR,SOFA	sequence	2	SO	insertion	tandem_duplication
SO:0001059	SO:0000667	DBVAR	"A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence." [SO:ke]	SO:1000173	"A duplication consisting of 2 identical adjacent regions." [SO:ke]	1905880	DBVAR,SOFA	SOFA	sequence	3	SO	sequence_alteration	tandem_duplication
SO:0001411	SO:0000667	DBVAR	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1000173	"A duplication consisting of 2 identical adjacent regions." [SO:ke]	1905881	DBVAR,SOFA	SOFA	sequence	3	SO	biological_region	tandem_duplication
SO:0002072	SO:0001059	DBVAR	"" []	SO:1000173	"A duplication consisting of 2 identical adjacent regions." [SO:ke]	2930321	SOFA	\N	sequence	4	SO	sequence_comparison	tandem_duplication
SO:0000001	SO:0001411	DBVAR	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1000173	"A duplication consisting of 2 identical adjacent regions." [SO:ke]	2930322	SOFA	SOFA	sequence	4	SO	region	tandem_duplication
SO:0000110	SO:0002072	DBVAR	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000173	"A duplication consisting of 2 identical adjacent regions." [SO:ke]	4003310	\N	SOFA	sequence	5	SO	sequence_feature	tandem_duplication
SO:0000110	SO:0000001	DBVAR	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1000173	"A duplication consisting of 2 identical adjacent regions." [SO:ke]	4003311	SOFA	SOFA	sequence	5	SO	sequence_feature	tandem_duplication
SO:1000175	\N	\N	"" []	SO:1000175	"" []	47154	\N	\N	sequence	0	SO	partially_characterized_chromosomal_mutation	partially_characterized_chromosomal_mutation
SO:1000170	SO:1000175	\N	"" []	SO:1000175	"" []	491984	\N	\N	sequence	1	SO	uncharacterized_chromosomal_mutation	partially_characterized_chromosomal_mutation
SO:1000183	SO:1000170	\N	"" []	SO:1000175	"" []	1074694	\N	\N	sequence	2	SO	chromosome_structure_variation	partially_characterized_chromosomal_mutation
SO:0000240	SO:1000183	\N	"" []	SO:1000175	"" []	1905882	\N	\N	sequence	3	SO	chromosome_variation	partially_characterized_chromosomal_mutation
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000175	"" []	2930323	\N	\N	sequence	4	SO	variant_collection	partially_characterized_chromosomal_mutation
SO:0001524	SO:0000240	\N	"" []	SO:1000175	"" []	2930324	\N	\N	sequence	4	SO	chromosomally_aberrant_genome	partially_characterized_chromosomal_mutation
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000175	"" []	4003312	\N	\N	sequence	5	SO	sequence_collection	partially_characterized_chromosomal_mutation
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000175	"" []	4003313	\N	\N	sequence	5	SO	variant_genome	partially_characterized_chromosomal_mutation
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000175	"" []	4967406	\N	\N	sequence	6	SO	genome	partially_characterized_chromosomal_mutation
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000175	"" []	5741801	\N	\N	sequence	7	SO	sequence_collection	partially_characterized_chromosomal_mutation
SO:1000182	\N	\N	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number." [SO:ke]	SO:1000182	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number." [SO:ke]	47155	\N	\N	sequence	0	SO	chromosome_number_variation	chromosome_number_variation
SO:0000240	SO:1000182	\N	"" []	SO:1000182	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number." [SO:ke]	491985	\N	\N	sequence	1	SO	chromosome_variation	chromosome_number_variation
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000182	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number." [SO:ke]	1074695	\N	\N	sequence	2	SO	variant_collection	chromosome_number_variation
SO:0001524	SO:0000240	\N	"" []	SO:1000182	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number." [SO:ke]	1074696	\N	\N	sequence	2	SO	chromosomally_aberrant_genome	chromosome_number_variation
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000182	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number." [SO:ke]	1905883	\N	\N	sequence	3	SO	sequence_collection	chromosome_number_variation
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000182	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number." [SO:ke]	1905884	\N	\N	sequence	3	SO	variant_genome	chromosome_number_variation
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000182	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number." [SO:ke]	2930325	\N	\N	sequence	4	SO	genome	chromosome_number_variation
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000182	"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number." [SO:ke]	4003314	\N	\N	sequence	5	SO	sequence_collection	chromosome_number_variation
SO:1000183	\N	\N	"" []	SO:1000183	"" []	47156	\N	\N	sequence	0	SO	chromosome_structure_variation	chromosome_structure_variation
SO:0000240	SO:1000183	\N	"" []	SO:1000183	"" []	491986	\N	\N	sequence	1	SO	chromosome_variation	chromosome_structure_variation
SO:0001507	SO:0000240	\N	"A collection of one or more sequences of an individual." [SO:ke]	SO:1000183	"" []	1074697	\N	\N	sequence	2	SO	variant_collection	chromosome_structure_variation
SO:0001524	SO:0000240	\N	"" []	SO:1000183	"" []	1074698	\N	\N	sequence	2	SO	chromosomally_aberrant_genome	chromosome_structure_variation
SO:0001260	SO:0001507	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000183	"" []	1905885	\N	\N	sequence	3	SO	sequence_collection	chromosome_structure_variation
SO:0001506	SO:0001524	\N	"A collection of sequences (often chromosomes) of an individual." [SO:ke]	SO:1000183	"" []	1905886	\N	\N	sequence	3	SO	variant_genome	chromosome_structure_variation
SO:0001026	SO:0001506	\N	"A genome is the sum of genetic material within a cell or virion." [SO:immuno_workshop]	SO:1000183	"" []	2930326	\N	\N	sequence	4	SO	genome	chromosome_structure_variation
SO:0001260	SO:0001026	\N	"A collection of discontinuous sequences." [SO:ke]	SO:1000183	"" []	4003315	\N	\N	sequence	5	SO	sequence_collection	chromosome_structure_variation
SO:1001187	\N	\N	"A transcript that is alternatively spliced." [SO:xp]	SO:1001187	"A transcript that is alternatively spliced." [SO:xp]	47157	\N	\N	sequence	0	SO	alternatively_spliced_transcript	alternatively_spliced_transcript
SO:0000673	SO:1001187	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001187	"A transcript that is alternatively spliced." [SO:xp]	491987	\N	SOFA	sequence	1	SO	transcript	alternatively_spliced_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:1001187	"A transcript that is alternatively spliced." [SO:xp]	1074699	SOFA	SOFA	sequence	2	SO	gene_member_region	alternatively_spliced_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001187	"A transcript that is alternatively spliced." [SO:xp]	1905887	SOFA	SOFA	sequence	3	SO	biological_region	alternatively_spliced_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1001187	"A transcript that is alternatively spliced." [SO:xp]	2930327	SOFA	SOFA	sequence	4	SO	region	alternatively_spliced_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1001187	"A transcript that is alternatively spliced." [SO:xp]	4003316	SOFA	SOFA	sequence	5	SO	sequence_feature	alternatively_spliced_transcript
SO:1001188	\N	\N	"A gene that is alternately spliced, but encodes only one polypeptide." [SO:ke]	SO:1001188	"A gene that is alternately spliced, but encodes only one polypeptide." [SO:ke]	47158	\N	\N	sequence	0	SO	encodes_1_polypeptide	encodes_1_polypeptide
SO:0000463	SO:1001188	\N	"A gene that encodes more than one transcript." [SO:ke]	SO:1001188	"A gene that is alternately spliced, but encodes only one polypeptide." [SO:ke]	491988	\N	\N	sequence	1	SO	encodes_alternately_spliced_transcripts	encodes_1_polypeptide
SO:0000401	SO:0000463	\N	"" []	SO:1001188	"A gene that is alternately spliced, but encodes only one polypeptide." [SO:ke]	1074700	\N	\N	sequence	2	SO	gene_attribute	encodes_1_polypeptide
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:1001188	"A gene that is alternately spliced, but encodes only one polypeptide." [SO:ke]	1905888	\N	\N	sequence	3	SO	feature_attribute	encodes_1_polypeptide
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:1001188	"A gene that is alternately spliced, but encodes only one polypeptide." [SO:ke]	2930328	\N	\N	sequence	4	SO	sequence_attribute	encodes_1_polypeptide
SO:1001189	\N	\N	"A gene that is alternately spliced, and encodes more than one polypeptide." [SO:ke]	SO:1001189	"A gene that is alternately spliced, and encodes more than one polypeptide." [SO:ke]	47159	\N	\N	sequence	0	SO	encodes_greater_than_1_polypeptide	encodes_greater_than_1_polypeptide
SO:0000463	SO:1001189	\N	"A gene that encodes more than one transcript." [SO:ke]	SO:1001189	"A gene that is alternately spliced, and encodes more than one polypeptide." [SO:ke]	491989	\N	\N	sequence	1	SO	encodes_alternately_spliced_transcripts	encodes_greater_than_1_polypeptide
SO:0000401	SO:0000463	\N	"" []	SO:1001189	"A gene that is alternately spliced, and encodes more than one polypeptide." [SO:ke]	1074701	\N	\N	sequence	2	SO	gene_attribute	encodes_greater_than_1_polypeptide
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:1001189	"A gene that is alternately spliced, and encodes more than one polypeptide." [SO:ke]	1905889	\N	\N	sequence	3	SO	feature_attribute	encodes_greater_than_1_polypeptide
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:1001189	"A gene that is alternately spliced, and encodes more than one polypeptide." [SO:ke]	2930329	\N	\N	sequence	4	SO	sequence_attribute	encodes_greater_than_1_polypeptide
SO:1001190	\N	\N	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences, but use different stop codons." [SO:ke]	SO:1001190	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences, but use different stop codons." [SO:ke]	47160	\N	\N	sequence	0	SO	encodes_different_polypeptides_different_stop	encodes_different_polypeptides_different_stop
SO:1001195	SO:1001190	\N	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences." [SO:ke]	SO:1001190	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences, but use different stop codons." [SO:ke]	491990	\N	\N	sequence	1	SO	encodes_overlapping_peptides	encodes_different_polypeptides_different_stop
SO:1001189	SO:1001195	\N	"A gene that is alternately spliced, and encodes more than one polypeptide." [SO:ke]	SO:1001190	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences, but use different stop codons." [SO:ke]	1074702	\N	\N	sequence	2	SO	encodes_greater_than_1_polypeptide	encodes_different_polypeptides_different_stop
SO:0000463	SO:1001189	\N	"A gene that encodes more than one transcript." [SO:ke]	SO:1001190	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences, but use different stop codons." [SO:ke]	1905890	\N	\N	sequence	3	SO	encodes_alternately_spliced_transcripts	encodes_different_polypeptides_different_stop
SO:0000401	SO:0000463	\N	"" []	SO:1001190	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences, but use different stop codons." [SO:ke]	2930330	\N	\N	sequence	4	SO	gene_attribute	encodes_different_polypeptides_different_stop
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:1001190	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences, but use different stop codons." [SO:ke]	4003317	\N	\N	sequence	5	SO	feature_attribute	encodes_different_polypeptides_different_stop
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:1001190	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences, but use different stop codons." [SO:ke]	4967407	\N	\N	sequence	6	SO	sequence_attribute	encodes_different_polypeptides_different_stop
SO:1001191	\N	\N	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences, but use different start codons." [SO:ke]	SO:1001191	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences, but use different start codons." [SO:ke]	47161	\N	\N	sequence	0	SO	encodes_overlapping_peptides_different_start	encodes_overlapping_peptides_different_start
SO:1001195	SO:1001191	\N	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences." [SO:ke]	SO:1001191	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences, but use different start codons." [SO:ke]	491991	\N	\N	sequence	1	SO	encodes_overlapping_peptides	encodes_overlapping_peptides_different_start
SO:1001189	SO:1001195	\N	"A gene that is alternately spliced, and encodes more than one polypeptide." [SO:ke]	SO:1001191	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences, but use different start codons." [SO:ke]	1074703	\N	\N	sequence	2	SO	encodes_greater_than_1_polypeptide	encodes_overlapping_peptides_different_start
SO:0000463	SO:1001189	\N	"A gene that encodes more than one transcript." [SO:ke]	SO:1001191	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences, but use different start codons." [SO:ke]	1905891	\N	\N	sequence	3	SO	encodes_alternately_spliced_transcripts	encodes_overlapping_peptides_different_start
SO:0000401	SO:0000463	\N	"" []	SO:1001191	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences, but use different start codons." [SO:ke]	2930331	\N	\N	sequence	4	SO	gene_attribute	encodes_overlapping_peptides_different_start
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:1001191	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences, but use different start codons." [SO:ke]	4003318	\N	\N	sequence	5	SO	feature_attribute	encodes_overlapping_peptides_different_start
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:1001191	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences, but use different start codons." [SO:ke]	4967408	\N	\N	sequence	6	SO	sequence_attribute	encodes_overlapping_peptides_different_start
SO:1001192	\N	\N	"A gene that is alternately spliced, and encodes more than one polypeptide, that do not have overlapping peptide sequences." [SO:ke]	SO:1001192	"A gene that is alternately spliced, and encodes more than one polypeptide, that do not have overlapping peptide sequences." [SO:ke]	47162	\N	\N	sequence	0	SO	encodes_disjoint_polypeptides	encodes_disjoint_polypeptides
SO:1001189	SO:1001192	\N	"A gene that is alternately spliced, and encodes more than one polypeptide." [SO:ke]	SO:1001192	"A gene that is alternately spliced, and encodes more than one polypeptide, that do not have overlapping peptide sequences." [SO:ke]	491992	\N	\N	sequence	1	SO	encodes_greater_than_1_polypeptide	encodes_disjoint_polypeptides
SO:0000463	SO:1001189	\N	"A gene that encodes more than one transcript." [SO:ke]	SO:1001192	"A gene that is alternately spliced, and encodes more than one polypeptide, that do not have overlapping peptide sequences." [SO:ke]	1074704	\N	\N	sequence	2	SO	encodes_alternately_spliced_transcripts	encodes_disjoint_polypeptides
SO:0000401	SO:0000463	\N	"" []	SO:1001192	"A gene that is alternately spliced, and encodes more than one polypeptide, that do not have overlapping peptide sequences." [SO:ke]	1905892	\N	\N	sequence	3	SO	gene_attribute	encodes_disjoint_polypeptides
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:1001192	"A gene that is alternately spliced, and encodes more than one polypeptide, that do not have overlapping peptide sequences." [SO:ke]	2930332	\N	\N	sequence	4	SO	feature_attribute	encodes_disjoint_polypeptides
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:1001192	"A gene that is alternately spliced, and encodes more than one polypeptide, that do not have overlapping peptide sequences." [SO:ke]	4003319	\N	\N	sequence	5	SO	sequence_attribute	encodes_disjoint_polypeptides
SO:1001193	\N	\N	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences, but use different start and stop codons." [SO:ke]	SO:1001193	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences, but use different start and stop codons." [SO:ke]	47163	\N	\N	sequence	0	SO	encodes_overlapping_polypeptides_different_start_and_stop	encodes_overlapping_polypeptides_different_start_and_stop
SO:1001195	SO:1001193	\N	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences." [SO:ke]	SO:1001193	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences, but use different start and stop codons." [SO:ke]	491993	\N	\N	sequence	1	SO	encodes_overlapping_peptides	encodes_overlapping_polypeptides_different_start_and_stop
SO:1001189	SO:1001195	\N	"A gene that is alternately spliced, and encodes more than one polypeptide." [SO:ke]	SO:1001193	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences, but use different start and stop codons." [SO:ke]	1074705	\N	\N	sequence	2	SO	encodes_greater_than_1_polypeptide	encodes_overlapping_polypeptides_different_start_and_stop
SO:0000463	SO:1001189	\N	"A gene that encodes more than one transcript." [SO:ke]	SO:1001193	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences, but use different start and stop codons." [SO:ke]	1905893	\N	\N	sequence	3	SO	encodes_alternately_spliced_transcripts	encodes_overlapping_polypeptides_different_start_and_stop
SO:0000401	SO:0000463	\N	"" []	SO:1001193	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences, but use different start and stop codons." [SO:ke]	2930333	\N	\N	sequence	4	SO	gene_attribute	encodes_overlapping_polypeptides_different_start_and_stop
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:1001193	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences, but use different start and stop codons." [SO:ke]	4003320	\N	\N	sequence	5	SO	feature_attribute	encodes_overlapping_polypeptides_different_start_and_stop
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:1001193	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences, but use different start and stop codons." [SO:ke]	4967409	\N	\N	sequence	6	SO	sequence_attribute	encodes_overlapping_polypeptides_different_start_and_stop
SO:1001195	\N	\N	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences." [SO:ke]	SO:1001195	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences." [SO:ke]	47164	\N	\N	sequence	0	SO	encodes_overlapping_peptides	encodes_overlapping_peptides
SO:1001189	SO:1001195	\N	"A gene that is alternately spliced, and encodes more than one polypeptide." [SO:ke]	SO:1001195	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences." [SO:ke]	491994	\N	\N	sequence	1	SO	encodes_greater_than_1_polypeptide	encodes_overlapping_peptides
SO:0000463	SO:1001189	\N	"A gene that encodes more than one transcript." [SO:ke]	SO:1001195	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences." [SO:ke]	1074706	\N	\N	sequence	2	SO	encodes_alternately_spliced_transcripts	encodes_overlapping_peptides
SO:0000401	SO:0000463	\N	"" []	SO:1001195	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences." [SO:ke]	1905894	\N	\N	sequence	3	SO	gene_attribute	encodes_overlapping_peptides
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:1001195	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences." [SO:ke]	2930334	\N	\N	sequence	4	SO	feature_attribute	encodes_overlapping_peptides
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:1001195	"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences." [SO:ke]	4003321	\N	\N	sequence	5	SO	sequence_attribute	encodes_overlapping_peptides
SO:1001196	\N	\N	"A maxicircle gene so extensively edited that it cannot be matched to its edited mRNA sequence." [SO:ma]	SO:1001196	"A maxicircle gene so extensively edited that it cannot be matched to its edited mRNA sequence." [SO:ma]	47165	\N	\N	sequence	0	SO	cryptogene	cryptogene
SO:0000654	SO:1001196	\N	"A mitochondrial gene located in a maxicircle." [SO:xp]	SO:1001196	"A maxicircle gene so extensively edited that it cannot be matched to its edited mRNA sequence." [SO:ma]	491995	\N	\N	sequence	1	SO	maxicircle_gene	cryptogene
SO:0001431	SO:1001196	\N	"A gene that is not transcribed under normal conditions and is not critical to normal cellular functioning." [SO:ke]	SO:1001196	"A maxicircle gene so extensively edited that it cannot be matched to its edited mRNA sequence." [SO:ma]	491996	\N	\N	sequence	1	SO	cryptic_gene	cryptogene
SO:0000089	SO:0000654	\N	"A gene located in kinetoplast sequence." [SO:xp]	SO:1001196	"A maxicircle gene so extensively edited that it cannot be matched to its edited mRNA sequence." [SO:ma]	1074707	\N	\N	sequence	2	SO	kinetoplast_gene	cryptogene
SO:0000742	SO:0000654	\N	"A maxicircle is a replicon, part of a kinetoplast, that contains open reading frames and replicates via a rolling circle method." [PMID:8395055]	SO:1001196	"A maxicircle gene so extensively edited that it cannot be matched to its edited mRNA sequence." [SO:ma]	1074708	\N	\N	sequence	2	SO	maxicircle	cryptogene
SO:0000704	SO:0001431	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:1001196	"A maxicircle gene so extensively edited that it cannot be matched to its edited mRNA sequence." [SO:ma]	1074709	\N	SOFA	sequence	2	SO	gene	cryptogene
SO:0000088	SO:0000089	\N	"A gene located in mitochondrial sequence." [SO:xp]	SO:1001196	"A maxicircle gene so extensively edited that it cannot be matched to its edited mRNA sequence." [SO:ma]	1905895	\N	\N	sequence	3	SO	mt_gene	cryptogene
SO:0001235	SO:0000742	\N	"A region containing at least one unique origin of replication and a unique termination site." [ISBN:0716719207]	SO:1001196	"A maxicircle gene so extensively edited that it cannot be matched to its edited mRNA sequence." [SO:ma]	1905896	\N	SOFA	sequence	3	SO	replicon	cryptogene
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001196	"A maxicircle gene so extensively edited that it cannot be matched to its edited mRNA sequence." [SO:ma]	4003322	SOFA	SOFA	sequence	5	SO	biological_region	cryptogene
SO:0000704	SO:0000088	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:1001196	"A maxicircle gene so extensively edited that it cannot be matched to its edited mRNA sequence." [SO:ma]	2930335	\N	SOFA	sequence	4	SO	gene	cryptogene
SO:0001411	SO:0001235	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001196	"A maxicircle gene so extensively edited that it cannot be matched to its edited mRNA sequence." [SO:ma]	2930336	SOFA	SOFA	sequence	4	SO	biological_region	cryptogene
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1001196	"A maxicircle gene so extensively edited that it cannot be matched to its edited mRNA sequence." [SO:ma]	4132361	SOFA	SOFA	sequence	6	SO	region	cryptogene
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1001196	"A maxicircle gene so extensively edited that it cannot be matched to its edited mRNA sequence." [SO:ma]	5180779	SOFA	SOFA	sequence	7	SO	sequence_feature	cryptogene
SO:1001197	\N	\N	"A primary transcript that has the quality dicistronic." [SO:xp]	SO:1001197	"A primary transcript that has the quality dicistronic." [SO:xp]	47166	\N	\N	sequence	0	SO	dicistronic_primary_transcript	dicistronic_primary_transcript
SO:0000079	SO:1001197	\N	"A transcript that is dicistronic." [SO:ke]	SO:1001197	"A primary transcript that has the quality dicistronic." [SO:xp]	491997	\N	\N	sequence	1	SO	dicistronic_transcript	dicistronic_primary_transcript
SO:0000631	SO:1001197	\N	"A primary transcript encoding for more than one gene product." [SO:ke]	SO:1001197	"A primary transcript that has the quality dicistronic." [SO:xp]	491998	\N	\N	sequence	1	SO	polycistronic_primary_transcript	dicistronic_primary_transcript
SO:0000078	SO:0000079	\N	"A transcript that is polycistronic." [SO:xp]	SO:1001197	"A primary transcript that has the quality dicistronic." [SO:xp]	1074710	\N	\N	sequence	2	SO	polycistronic_transcript	dicistronic_primary_transcript
SO:0000078	SO:0000631	\N	"A transcript that is polycistronic." [SO:xp]	SO:1001197	"A primary transcript that has the quality dicistronic." [SO:xp]	1074711	\N	\N	sequence	2	SO	polycistronic_transcript	dicistronic_primary_transcript
SO:0000185	SO:0000631	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:1001197	"A primary transcript that has the quality dicistronic." [SO:xp]	1074712	\N	SOFA	sequence	2	SO	primary_transcript	dicistronic_primary_transcript
SO:0000673	SO:0000078	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001197	"A primary transcript that has the quality dicistronic." [SO:xp]	1905898	\N	SOFA	sequence	3	SO	transcript	dicistronic_primary_transcript
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001197	"A primary transcript that has the quality dicistronic." [SO:xp]	1905899	SOFA	SOFA	sequence	3	SO	transcript	dicistronic_primary_transcript
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:1001197	"A primary transcript that has the quality dicistronic." [SO:xp]	2930338	SOFA	SOFA	sequence	4	SO	gene_member_region	dicistronic_primary_transcript
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001197	"A primary transcript that has the quality dicistronic." [SO:xp]	4003325	SOFA	SOFA	sequence	5	SO	biological_region	dicistronic_primary_transcript
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1001197	"A primary transcript that has the quality dicistronic." [SO:xp]	4967410	SOFA	SOFA	sequence	6	SO	region	dicistronic_primary_transcript
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1001197	"A primary transcript that has the quality dicistronic." [SO:xp]	5741802	SOFA	SOFA	sequence	7	SO	sequence_feature	dicistronic_primary_transcript
SO:1001217	\N	\N	"" []	SO:1001217	"" []	47167	\N	\N	sequence	0	SO	member_of_regulon	member_of_regulon
SO:0000081	SO:1001217	\N	"" []	SO:1001217	"" []	491999	\N	\N	sequence	1	SO	gene_array_member	member_of_regulon
SO:0000401	SO:0000081	\N	"" []	SO:1001217	"" []	1074713	\N	\N	sequence	2	SO	gene_attribute	member_of_regulon
SO:0000733	SO:0000401	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:1001217	"" []	1905900	\N	\N	sequence	3	SO	feature_attribute	member_of_regulon
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:1001217	"" []	2930339	\N	\N	sequence	4	SO	sequence_attribute	member_of_regulon
SO:1001246	\N	\N	"A CDS with the evidence status of being independently known." [SO:xp]	SO:1001246	"A CDS with the evidence status of being independently known." [SO:xp]	47168	\N	\N	sequence	0	SO	CDS_independently_known	CDS_independently_known
SO:0000316	SO:1001246	\N	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	SO:1001246	"A CDS with the evidence status of being independently known." [SO:xp]	492000	\N	SOFA	sequence	1	SO	CDS	CDS_independently_known
SO:0000836	SO:0000316	\N	"A region of an mRNA." [SO:cb]	SO:1001246	"A CDS with the evidence status of being independently known." [SO:xp]	1074714	SOFA	SOFA	sequence	2	SO	mRNA_region	CDS_independently_known
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:1001246	"A CDS with the evidence status of being independently known." [SO:xp]	1905901	SOFA	SOFA	sequence	3	SO	mRNA	CDS_independently_known
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:1001246	"A CDS with the evidence status of being independently known." [SO:xp]	1905902	SOFA	SOFA	sequence	3	SO	mature_transcript_region	CDS_independently_known
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:1001246	"A CDS with the evidence status of being independently known." [SO:xp]	2930340	SOFA	SOFA	sequence	4	SO	mature_transcript	CDS_independently_known
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:1001246	"A CDS with the evidence status of being independently known." [SO:xp]	2930341	SOFA	SOFA	sequence	4	SO	transcript_region	CDS_independently_known
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001246	"A CDS with the evidence status of being independently known." [SO:xp]	4003326	SOFA	SOFA	sequence	5	SO	transcript	CDS_independently_known
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001246	"A CDS with the evidence status of being independently known." [SO:xp]	4003327	SOFA	SOFA	sequence	5	SO	transcript	CDS_independently_known
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001246	"A CDS with the evidence status of being independently known." [SO:xp]	4003328	SOFA	SOFA	sequence	5	SO	biological_region	CDS_independently_known
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:1001246	"A CDS with the evidence status of being independently known." [SO:xp]	4967411	SOFA	SOFA	sequence	6	SO	gene_member_region	CDS_independently_known
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1001246	"A CDS with the evidence status of being independently known." [SO:xp]	6311383	SOFA	SOFA	sequence	8	SO	region	CDS_independently_known
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001246	"A CDS with the evidence status of being independently known." [SO:xp]	5741803	SOFA	SOFA	sequence	7	SO	biological_region	CDS_independently_known
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1001246	"A CDS with the evidence status of being independently known." [SO:xp]	6550299	SOFA	SOFA	sequence	9	SO	sequence_feature	CDS_independently_known
SO:1001247	\N	\N	"A CDS whose predicted amino acid sequence is unsupported by any experimental evidence or by any match with any other known sequence." [SO:ma]	SO:1001247	"A CDS whose predicted amino acid sequence is unsupported by any experimental evidence or by any match with any other known sequence." [SO:ma]	47169	\N	\N	sequence	0	SO	orphan_CDS	orphan_CDS
SO:1001254	SO:1001247	\N	"A CDS that is predicted." [SO:ke]	SO:1001247	"A CDS whose predicted amino acid sequence is unsupported by any experimental evidence or by any match with any other known sequence." [SO:ma]	492001	\N	\N	sequence	1	SO	CDS_predicted	orphan_CDS
SO:0000316	SO:1001254	\N	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	SO:1001247	"A CDS whose predicted amino acid sequence is unsupported by any experimental evidence or by any match with any other known sequence." [SO:ma]	1074715	\N	SOFA	sequence	2	SO	CDS	orphan_CDS
SO:0000836	SO:0000316	\N	"A region of an mRNA." [SO:cb]	SO:1001247	"A CDS whose predicted amino acid sequence is unsupported by any experimental evidence or by any match with any other known sequence." [SO:ma]	1905903	SOFA	SOFA	sequence	3	SO	mRNA_region	orphan_CDS
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:1001247	"A CDS whose predicted amino acid sequence is unsupported by any experimental evidence or by any match with any other known sequence." [SO:ma]	2930342	SOFA	SOFA	sequence	4	SO	mRNA	orphan_CDS
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:1001247	"A CDS whose predicted amino acid sequence is unsupported by any experimental evidence or by any match with any other known sequence." [SO:ma]	2930343	SOFA	SOFA	sequence	4	SO	mature_transcript_region	orphan_CDS
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:1001247	"A CDS whose predicted amino acid sequence is unsupported by any experimental evidence or by any match with any other known sequence." [SO:ma]	4003329	SOFA	SOFA	sequence	5	SO	mature_transcript	orphan_CDS
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:1001247	"A CDS whose predicted amino acid sequence is unsupported by any experimental evidence or by any match with any other known sequence." [SO:ma]	4003330	SOFA	SOFA	sequence	5	SO	transcript_region	orphan_CDS
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001247	"A CDS whose predicted amino acid sequence is unsupported by any experimental evidence or by any match with any other known sequence." [SO:ma]	4967413	SOFA	SOFA	sequence	6	SO	transcript	orphan_CDS
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001247	"A CDS whose predicted amino acid sequence is unsupported by any experimental evidence or by any match with any other known sequence." [SO:ma]	4967414	SOFA	SOFA	sequence	6	SO	transcript	orphan_CDS
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001247	"A CDS whose predicted amino acid sequence is unsupported by any experimental evidence or by any match with any other known sequence." [SO:ma]	4967415	SOFA	SOFA	sequence	6	SO	biological_region	orphan_CDS
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:1001247	"A CDS whose predicted amino acid sequence is unsupported by any experimental evidence or by any match with any other known sequence." [SO:ma]	5741805	SOFA	SOFA	sequence	7	SO	gene_member_region	orphan_CDS
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1001247	"A CDS whose predicted amino acid sequence is unsupported by any experimental evidence or by any match with any other known sequence." [SO:ma]	6699563	SOFA	SOFA	sequence	9	SO	region	orphan_CDS
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001247	"A CDS whose predicted amino acid sequence is unsupported by any experimental evidence or by any match with any other known sequence." [SO:ma]	6311384	SOFA	SOFA	sequence	8	SO	biological_region	orphan_CDS
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1001247	"A CDS whose predicted amino acid sequence is unsupported by any experimental evidence or by any match with any other known sequence." [SO:ma]	6888948	SOFA	SOFA	sequence	10	SO	sequence_feature	orphan_CDS
SO:1001249	\N	\N	"A CDS that is supported by domain similarity." [SO:xp]	SO:1001249	"A CDS that is supported by domain similarity." [SO:xp]	47170	\N	\N	sequence	0	SO	CDS_supported_by_domain_match_data	CDS_supported_by_domain_match_data
SO:1001251	SO:1001249	\N	"A CDS that is supported by sequence similarity data." [SO:xp]	SO:1001249	"A CDS that is supported by domain similarity." [SO:xp]	492002	\N	\N	sequence	1	SO	CDS_supported_by_sequence_similarity_data	CDS_supported_by_domain_match_data
SO:1001254	SO:1001251	\N	"A CDS that is predicted." [SO:ke]	SO:1001249	"A CDS that is supported by domain similarity." [SO:xp]	1074716	\N	\N	sequence	2	SO	CDS_predicted	CDS_supported_by_domain_match_data
SO:0000316	SO:1001254	\N	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	SO:1001249	"A CDS that is supported by domain similarity." [SO:xp]	1905904	\N	SOFA	sequence	3	SO	CDS	CDS_supported_by_domain_match_data
SO:0000836	SO:0000316	\N	"A region of an mRNA." [SO:cb]	SO:1001249	"A CDS that is supported by domain similarity." [SO:xp]	2930344	SOFA	SOFA	sequence	4	SO	mRNA_region	CDS_supported_by_domain_match_data
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:1001249	"A CDS that is supported by domain similarity." [SO:xp]	4003331	SOFA	SOFA	sequence	5	SO	mRNA	CDS_supported_by_domain_match_data
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:1001249	"A CDS that is supported by domain similarity." [SO:xp]	4003332	SOFA	SOFA	sequence	5	SO	mature_transcript_region	CDS_supported_by_domain_match_data
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:1001249	"A CDS that is supported by domain similarity." [SO:xp]	4967416	SOFA	SOFA	sequence	6	SO	mature_transcript	CDS_supported_by_domain_match_data
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:1001249	"A CDS that is supported by domain similarity." [SO:xp]	4967417	SOFA	SOFA	sequence	6	SO	transcript_region	CDS_supported_by_domain_match_data
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001249	"A CDS that is supported by domain similarity." [SO:xp]	5741807	SOFA	SOFA	sequence	7	SO	transcript	CDS_supported_by_domain_match_data
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001249	"A CDS that is supported by domain similarity." [SO:xp]	5741808	SOFA	SOFA	sequence	7	SO	transcript	CDS_supported_by_domain_match_data
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001249	"A CDS that is supported by domain similarity." [SO:xp]	5741809	SOFA	SOFA	sequence	7	SO	biological_region	CDS_supported_by_domain_match_data
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:1001249	"A CDS that is supported by domain similarity." [SO:xp]	6311386	SOFA	SOFA	sequence	8	SO	gene_member_region	CDS_supported_by_domain_match_data
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1001249	"A CDS that is supported by domain similarity." [SO:xp]	6948223	SOFA	SOFA	sequence	10	SO	region	CDS_supported_by_domain_match_data
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001249	"A CDS that is supported by domain similarity." [SO:xp]	6699564	SOFA	SOFA	sequence	9	SO	biological_region	CDS_supported_by_domain_match_data
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1001249	"A CDS that is supported by domain similarity." [SO:xp]	7085889	SOFA	SOFA	sequence	11	SO	sequence_feature	CDS_supported_by_domain_match_data
SO:1001251	\N	\N	"A CDS that is supported by sequence similarity data." [SO:xp]	SO:1001251	"A CDS that is supported by sequence similarity data." [SO:xp]	47171	\N	\N	sequence	0	SO	CDS_supported_by_sequence_similarity_data	CDS_supported_by_sequence_similarity_data
SO:1001254	SO:1001251	\N	"A CDS that is predicted." [SO:ke]	SO:1001251	"A CDS that is supported by sequence similarity data." [SO:xp]	492003	\N	\N	sequence	1	SO	CDS_predicted	CDS_supported_by_sequence_similarity_data
SO:0000316	SO:1001254	\N	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	SO:1001251	"A CDS that is supported by sequence similarity data." [SO:xp]	1074717	\N	SOFA	sequence	2	SO	CDS	CDS_supported_by_sequence_similarity_data
SO:0000836	SO:0000316	\N	"A region of an mRNA." [SO:cb]	SO:1001251	"A CDS that is supported by sequence similarity data." [SO:xp]	1905905	SOFA	SOFA	sequence	3	SO	mRNA_region	CDS_supported_by_sequence_similarity_data
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:1001251	"A CDS that is supported by sequence similarity data." [SO:xp]	2930345	SOFA	SOFA	sequence	4	SO	mRNA	CDS_supported_by_sequence_similarity_data
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:1001251	"A CDS that is supported by sequence similarity data." [SO:xp]	2930346	SOFA	SOFA	sequence	4	SO	mature_transcript_region	CDS_supported_by_sequence_similarity_data
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:1001251	"A CDS that is supported by sequence similarity data." [SO:xp]	4003333	SOFA	SOFA	sequence	5	SO	mature_transcript	CDS_supported_by_sequence_similarity_data
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:1001251	"A CDS that is supported by sequence similarity data." [SO:xp]	4003334	SOFA	SOFA	sequence	5	SO	transcript_region	CDS_supported_by_sequence_similarity_data
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001251	"A CDS that is supported by sequence similarity data." [SO:xp]	4967418	SOFA	SOFA	sequence	6	SO	transcript	CDS_supported_by_sequence_similarity_data
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001251	"A CDS that is supported by sequence similarity data." [SO:xp]	4967419	SOFA	SOFA	sequence	6	SO	transcript	CDS_supported_by_sequence_similarity_data
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001251	"A CDS that is supported by sequence similarity data." [SO:xp]	4967420	SOFA	SOFA	sequence	6	SO	biological_region	CDS_supported_by_sequence_similarity_data
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:1001251	"A CDS that is supported by sequence similarity data." [SO:xp]	5741810	SOFA	SOFA	sequence	7	SO	gene_member_region	CDS_supported_by_sequence_similarity_data
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1001251	"A CDS that is supported by sequence similarity data." [SO:xp]	6699566	SOFA	SOFA	sequence	9	SO	region	CDS_supported_by_sequence_similarity_data
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001251	"A CDS that is supported by sequence similarity data." [SO:xp]	6311388	SOFA	SOFA	sequence	8	SO	biological_region	CDS_supported_by_sequence_similarity_data
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1001251	"A CDS that is supported by sequence similarity data." [SO:xp]	6888949	SOFA	SOFA	sequence	10	SO	sequence_feature	CDS_supported_by_sequence_similarity_data
SO:1001254	\N	\N	"A CDS that is predicted." [SO:ke]	SO:1001254	"A CDS that is predicted." [SO:ke]	47172	\N	\N	sequence	0	SO	CDS_predicted	CDS_predicted
SO:0000316	SO:1001254	\N	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	SO:1001254	"A CDS that is predicted." [SO:ke]	492004	\N	SOFA	sequence	1	SO	CDS	CDS_predicted
SO:0000836	SO:0000316	\N	"A region of an mRNA." [SO:cb]	SO:1001254	"A CDS that is predicted." [SO:ke]	1074718	SOFA	SOFA	sequence	2	SO	mRNA_region	CDS_predicted
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:1001254	"A CDS that is predicted." [SO:ke]	1905906	SOFA	SOFA	sequence	3	SO	mRNA	CDS_predicted
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:1001254	"A CDS that is predicted." [SO:ke]	1905907	SOFA	SOFA	sequence	3	SO	mature_transcript_region	CDS_predicted
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:1001254	"A CDS that is predicted." [SO:ke]	2930347	SOFA	SOFA	sequence	4	SO	mature_transcript	CDS_predicted
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:1001254	"A CDS that is predicted." [SO:ke]	2930348	SOFA	SOFA	sequence	4	SO	transcript_region	CDS_predicted
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001254	"A CDS that is predicted." [SO:ke]	4003335	SOFA	SOFA	sequence	5	SO	transcript	CDS_predicted
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001254	"A CDS that is predicted." [SO:ke]	4003336	SOFA	SOFA	sequence	5	SO	transcript	CDS_predicted
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001254	"A CDS that is predicted." [SO:ke]	4003337	SOFA	SOFA	sequence	5	SO	biological_region	CDS_predicted
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:1001254	"A CDS that is predicted." [SO:ke]	4967421	SOFA	SOFA	sequence	6	SO	gene_member_region	CDS_predicted
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1001254	"A CDS that is predicted." [SO:ke]	6311390	SOFA	SOFA	sequence	8	SO	region	CDS_predicted
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001254	"A CDS that is predicted." [SO:ke]	5741812	SOFA	SOFA	sequence	7	SO	biological_region	CDS_predicted
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1001254	"A CDS that is predicted." [SO:ke]	6550300	SOFA	SOFA	sequence	9	SO	sequence_feature	CDS_predicted
SO:1001259	\N	\N	"A CDS that is supported by similarity to EST or cDNA data." [SO:xp]	SO:1001259	"A CDS that is supported by similarity to EST or cDNA data." [SO:xp]	47173	\N	\N	sequence	0	SO	CDS_supported_by_EST_or_cDNA_data	CDS_supported_by_EST_or_cDNA_data
SO:1001251	SO:1001259	\N	"A CDS that is supported by sequence similarity data." [SO:xp]	SO:1001259	"A CDS that is supported by similarity to EST or cDNA data." [SO:xp]	492005	\N	\N	sequence	1	SO	CDS_supported_by_sequence_similarity_data	CDS_supported_by_EST_or_cDNA_data
SO:1001254	SO:1001251	\N	"A CDS that is predicted." [SO:ke]	SO:1001259	"A CDS that is supported by similarity to EST or cDNA data." [SO:xp]	1074719	\N	\N	sequence	2	SO	CDS_predicted	CDS_supported_by_EST_or_cDNA_data
SO:0000316	SO:1001254	\N	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	SO:1001259	"A CDS that is supported by similarity to EST or cDNA data." [SO:xp]	1905908	\N	SOFA	sequence	3	SO	CDS	CDS_supported_by_EST_or_cDNA_data
SO:0000836	SO:0000316	\N	"A region of an mRNA." [SO:cb]	SO:1001259	"A CDS that is supported by similarity to EST or cDNA data." [SO:xp]	2930349	SOFA	SOFA	sequence	4	SO	mRNA_region	CDS_supported_by_EST_or_cDNA_data
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:1001259	"A CDS that is supported by similarity to EST or cDNA data." [SO:xp]	4003338	SOFA	SOFA	sequence	5	SO	mRNA	CDS_supported_by_EST_or_cDNA_data
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:1001259	"A CDS that is supported by similarity to EST or cDNA data." [SO:xp]	4003339	SOFA	SOFA	sequence	5	SO	mature_transcript_region	CDS_supported_by_EST_or_cDNA_data
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:1001259	"A CDS that is supported by similarity to EST or cDNA data." [SO:xp]	4967423	SOFA	SOFA	sequence	6	SO	mature_transcript	CDS_supported_by_EST_or_cDNA_data
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:1001259	"A CDS that is supported by similarity to EST or cDNA data." [SO:xp]	4967424	SOFA	SOFA	sequence	6	SO	transcript_region	CDS_supported_by_EST_or_cDNA_data
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001259	"A CDS that is supported by similarity to EST or cDNA data." [SO:xp]	5741814	SOFA	SOFA	sequence	7	SO	transcript	CDS_supported_by_EST_or_cDNA_data
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001259	"A CDS that is supported by similarity to EST or cDNA data." [SO:xp]	5741815	SOFA	SOFA	sequence	7	SO	transcript	CDS_supported_by_EST_or_cDNA_data
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001259	"A CDS that is supported by similarity to EST or cDNA data." [SO:xp]	5741816	SOFA	SOFA	sequence	7	SO	biological_region	CDS_supported_by_EST_or_cDNA_data
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:1001259	"A CDS that is supported by similarity to EST or cDNA data." [SO:xp]	6311391	SOFA	SOFA	sequence	8	SO	gene_member_region	CDS_supported_by_EST_or_cDNA_data
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1001259	"A CDS that is supported by similarity to EST or cDNA data." [SO:xp]	6948224	SOFA	SOFA	sequence	10	SO	region	CDS_supported_by_EST_or_cDNA_data
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001259	"A CDS that is supported by similarity to EST or cDNA data." [SO:xp]	6699567	SOFA	SOFA	sequence	9	SO	biological_region	CDS_supported_by_EST_or_cDNA_data
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1001259	"A CDS that is supported by similarity to EST or cDNA data." [SO:xp]	7085890	SOFA	SOFA	sequence	11	SO	sequence_feature	CDS_supported_by_EST_or_cDNA_data
SO:1001260	\N	\N	"A Shine-Dalgarno sequence that stimulates recoding through interactions with the anti-Shine-Dalgarno in the RNA of small ribosomal subunits of translating ribosomes. The signal is only operative in Bacteria." [PMID:12519954, SO:ke]	SO:1001260	"A Shine-Dalgarno sequence that stimulates recoding through interactions with the anti-Shine-Dalgarno in the RNA of small ribosomal subunits of translating ribosomes. The signal is only operative in Bacteria." [PMID:12519954, SO:ke]	47174	\N	\N	sequence	0	SO	internal_Shine_Dalgarno_sequence	internal_Shine_Dalgarno_sequence
SO:0000243	SO:1001260	\N	"Sequence element that recruits a ribosomal subunit to internal mRNA for translation initiation." [SO:ke]	SO:1001260	"A Shine-Dalgarno sequence that stimulates recoding through interactions with the anti-Shine-Dalgarno in the RNA of small ribosomal subunits of translating ribosomes. The signal is only operative in Bacteria." [PMID:12519954, SO:ke]	492006	\N	\N	sequence	1	SO	internal_ribosome_entry_site	internal_Shine_Dalgarno_sequence
SO:1001268	SO:1001260	\N	"A site in an mRNA sequence that stimulates the recoding of a region in the same mRNA." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12519954&dopt=Abstract]	SO:1001260	"A Shine-Dalgarno sequence that stimulates recoding through interactions with the anti-Shine-Dalgarno in the RNA of small ribosomal subunits of translating ribosomes. The signal is only operative in Bacteria." [PMID:12519954, SO:ke]	492007	\N	\N	sequence	1	SO	recoding_stimulatory_region	internal_Shine_Dalgarno_sequence
SO:0000139	SO:0000243	\N	"Region in mRNA where ribosome assembles." [SO:ke]	SO:1001260	"A Shine-Dalgarno sequence that stimulates recoding through interactions with the anti-Shine-Dalgarno in the RNA of small ribosomal subunits of translating ribosomes. The signal is only operative in Bacteria." [PMID:12519954, SO:ke]	1074720	\N	SOFA	sequence	2	SO	ribosome_entry_site	internal_Shine_Dalgarno_sequence
SO:0000836	SO:1001268	\N	"A region of an mRNA." [SO:cb]	SO:1001260	"A Shine-Dalgarno sequence that stimulates recoding through interactions with the anti-Shine-Dalgarno in the RNA of small ribosomal subunits of translating ribosomes. The signal is only operative in Bacteria." [PMID:12519954, SO:ke]	1074721	\N	SOFA	sequence	2	SO	mRNA_region	internal_Shine_Dalgarno_sequence
SO:0000204	SO:0000139	\N	"A region at the 5' end of a mature transcript (preceding the initiation codon) that is not translated into a protein." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:1001260	"A Shine-Dalgarno sequence that stimulates recoding through interactions with the anti-Shine-Dalgarno in the RNA of small ribosomal subunits of translating ribosomes. The signal is only operative in Bacteria." [PMID:12519954, SO:ke]	1905909	SOFA	SOFA	sequence	3	SO	five_prime_UTR	internal_Shine_Dalgarno_sequence
SO:0000836	SO:0000139	\N	"A region of an mRNA." [SO:cb]	SO:1001260	"A Shine-Dalgarno sequence that stimulates recoding through interactions with the anti-Shine-Dalgarno in the RNA of small ribosomal subunits of translating ribosomes. The signal is only operative in Bacteria." [PMID:12519954, SO:ke]	1905910	SOFA	SOFA	sequence	3	SO	mRNA_region	internal_Shine_Dalgarno_sequence
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:1001260	"A Shine-Dalgarno sequence that stimulates recoding through interactions with the anti-Shine-Dalgarno in the RNA of small ribosomal subunits of translating ribosomes. The signal is only operative in Bacteria." [PMID:12519954, SO:ke]	4967425	SOFA	SOFA	sequence	6	SO	mRNA	internal_Shine_Dalgarno_sequence
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:1001260	"A Shine-Dalgarno sequence that stimulates recoding through interactions with the anti-Shine-Dalgarno in the RNA of small ribosomal subunits of translating ribosomes. The signal is only operative in Bacteria." [PMID:12519954, SO:ke]	4967426	SOFA	SOFA	sequence	6	SO	mature_transcript_region	internal_Shine_Dalgarno_sequence
SO:0000203	SO:0000204	\N	"Messenger RNA sequences that are untranslated and lie five prime or three prime to sequences which are translated." [SO:ke]	SO:1001260	"A Shine-Dalgarno sequence that stimulates recoding through interactions with the anti-Shine-Dalgarno in the RNA of small ribosomal subunits of translating ribosomes. The signal is only operative in Bacteria." [PMID:12519954, SO:ke]	2930350	SOFA	SOFA	sequence	4	SO	UTR	internal_Shine_Dalgarno_sequence
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:1001260	"A Shine-Dalgarno sequence that stimulates recoding through interactions with the anti-Shine-Dalgarno in the RNA of small ribosomal subunits of translating ribosomes. The signal is only operative in Bacteria." [PMID:12519954, SO:ke]	5059259	SOFA	SOFA	sequence	7	SO	mature_transcript	internal_Shine_Dalgarno_sequence
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:1001260	"A Shine-Dalgarno sequence that stimulates recoding through interactions with the anti-Shine-Dalgarno in the RNA of small ribosomal subunits of translating ribosomes. The signal is only operative in Bacteria." [PMID:12519954, SO:ke]	5059260	SOFA	SOFA	sequence	7	SO	transcript_region	internal_Shine_Dalgarno_sequence
SO:0000836	SO:0000203	\N	"A region of an mRNA." [SO:cb]	SO:1001260	"A Shine-Dalgarno sequence that stimulates recoding through interactions with the anti-Shine-Dalgarno in the RNA of small ribosomal subunits of translating ribosomes. The signal is only operative in Bacteria." [PMID:12519954, SO:ke]	4003340	SOFA	SOFA	sequence	5	SO	mRNA_region	internal_Shine_Dalgarno_sequence
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001260	"A Shine-Dalgarno sequence that stimulates recoding through interactions with the anti-Shine-Dalgarno in the RNA of small ribosomal subunits of translating ribosomes. The signal is only operative in Bacteria." [PMID:12519954, SO:ke]	5876479	SOFA	SOFA	sequence	8	SO	transcript	internal_Shine_Dalgarno_sequence
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001260	"A Shine-Dalgarno sequence that stimulates recoding through interactions with the anti-Shine-Dalgarno in the RNA of small ribosomal subunits of translating ribosomes. The signal is only operative in Bacteria." [PMID:12519954, SO:ke]	5876480	SOFA	SOFA	sequence	8	SO	transcript	internal_Shine_Dalgarno_sequence
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001260	"A Shine-Dalgarno sequence that stimulates recoding through interactions with the anti-Shine-Dalgarno in the RNA of small ribosomal subunits of translating ribosomes. The signal is only operative in Bacteria." [PMID:12519954, SO:ke]	5876481	SOFA	SOFA	sequence	8	SO	biological_region	internal_Shine_Dalgarno_sequence
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:1001260	"A Shine-Dalgarno sequence that stimulates recoding through interactions with the anti-Shine-Dalgarno in the RNA of small ribosomal subunits of translating ribosomes. The signal is only operative in Bacteria." [PMID:12519954, SO:ke]	6469783	SOFA	SOFA	sequence	9	SO	gene_member_region	internal_Shine_Dalgarno_sequence
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1001260	"A Shine-Dalgarno sequence that stimulates recoding through interactions with the anti-Shine-Dalgarno in the RNA of small ribosomal subunits of translating ribosomes. The signal is only operative in Bacteria." [PMID:12519954, SO:ke]	7068350	SOFA	SOFA	sequence	11	SO	region	internal_Shine_Dalgarno_sequence
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001260	"A Shine-Dalgarno sequence that stimulates recoding through interactions with the anti-Shine-Dalgarno in the RNA of small ribosomal subunits of translating ribosomes. The signal is only operative in Bacteria." [PMID:12519954, SO:ke]	6848189	SOFA	SOFA	sequence	10	SO	biological_region	internal_Shine_Dalgarno_sequence
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1001260	"A Shine-Dalgarno sequence that stimulates recoding through interactions with the anti-Shine-Dalgarno in the RNA of small ribosomal subunits of translating ribosomes. The signal is only operative in Bacteria." [PMID:12519954, SO:ke]	7181740	SOFA	SOFA	sequence	12	SO	sequence_feature	internal_Shine_Dalgarno_sequence
SO:1001261	\N	\N	"The sequence of a mature mRNA transcript, modified before translation or during translation, usually by special cis-acting signals." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8811194&dopt=Abstract]	SO:1001261	"The sequence of a mature mRNA transcript, modified before translation or during translation, usually by special cis-acting signals." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8811194&dopt=Abstract]	47175	\N	\N	sequence	0	SO	recoded_mRNA	recoded_mRNA
SO:0000234	SO:1001261	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:1001261	"The sequence of a mature mRNA transcript, modified before translation or during translation, usually by special cis-acting signals." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8811194&dopt=Abstract]	492008	\N	SOFA	sequence	1	SO	mRNA	recoded_mRNA
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:1001261	"The sequence of a mature mRNA transcript, modified before translation or during translation, usually by special cis-acting signals." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8811194&dopt=Abstract]	1074722	SOFA	SOFA	sequence	2	SO	mature_transcript	recoded_mRNA
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001261	"The sequence of a mature mRNA transcript, modified before translation or during translation, usually by special cis-acting signals." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8811194&dopt=Abstract]	1905913	SOFA	SOFA	sequence	3	SO	transcript	recoded_mRNA
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:1001261	"The sequence of a mature mRNA transcript, modified before translation or during translation, usually by special cis-acting signals." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8811194&dopt=Abstract]	2930355	SOFA	SOFA	sequence	4	SO	gene_member_region	recoded_mRNA
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001261	"The sequence of a mature mRNA transcript, modified before translation or during translation, usually by special cis-acting signals." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8811194&dopt=Abstract]	4003344	SOFA	SOFA	sequence	5	SO	biological_region	recoded_mRNA
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1001261	"The sequence of a mature mRNA transcript, modified before translation or during translation, usually by special cis-acting signals." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8811194&dopt=Abstract]	4967429	SOFA	SOFA	sequence	6	SO	region	recoded_mRNA
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1001261	"The sequence of a mature mRNA transcript, modified before translation or during translation, usually by special cis-acting signals." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8811194&dopt=Abstract]	5741819	SOFA	SOFA	sequence	7	SO	sequence_feature	recoded_mRNA
SO:1001262	\N	\N	"An attribute describing a translational frameshift of -1." [SO:ke]	SO:1001262	"An attribute describing a translational frameshift of -1." [SO:ke]	47176	\N	\N	sequence	0	SO	minus_1_translationally_frameshifted	minus_1_translationally_frameshifted
SO:0000887	SO:1001262	\N	"Recoding by frameshifting a particular site." [SO:ke]	SO:1001262	"An attribute describing a translational frameshift of -1." [SO:ke]	492009	\N	\N	sequence	1	SO	translationally_frameshifted	minus_1_translationally_frameshifted
SO:0000881	SO:0000887	\N	"An attribute describing an mRNA sequence that has been reprogrammed at translation, causing localized alterations." [SO:ke]	SO:1001262	"An attribute describing a translational frameshift of -1." [SO:ke]	1074723	\N	\N	sequence	2	SO	recoded	minus_1_translationally_frameshifted
SO:0000863	SO:0000881	\N	"An attribute describing an mRNA feature." [SO:ke]	SO:1001262	"An attribute describing a translational frameshift of -1." [SO:ke]	1905914	\N	\N	sequence	3	SO	mRNA_attribute	minus_1_translationally_frameshifted
SO:0000237	SO:0000863	\N	"" []	SO:1001262	"An attribute describing a translational frameshift of -1." [SO:ke]	2930356	\N	\N	sequence	4	SO	transcript_attribute	minus_1_translationally_frameshifted
SO:0000733	SO:0000237	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:1001262	"An attribute describing a translational frameshift of -1." [SO:ke]	4003345	\N	\N	sequence	5	SO	feature_attribute	minus_1_translationally_frameshifted
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:1001262	"An attribute describing a translational frameshift of -1." [SO:ke]	4967430	\N	\N	sequence	6	SO	sequence_attribute	minus_1_translationally_frameshifted
SO:1001263	\N	\N	"An attribute describing a translational frameshift of +1." [SO:ke]	SO:1001263	"An attribute describing a translational frameshift of +1." [SO:ke]	47177	\N	\N	sequence	0	SO	plus_1_translationally_frameshifted	plus_1_translationally_frameshifted
SO:0000887	SO:1001263	\N	"Recoding by frameshifting a particular site." [SO:ke]	SO:1001263	"An attribute describing a translational frameshift of +1." [SO:ke]	492010	\N	\N	sequence	1	SO	translationally_frameshifted	plus_1_translationally_frameshifted
SO:0000881	SO:0000887	\N	"An attribute describing an mRNA sequence that has been reprogrammed at translation, causing localized alterations." [SO:ke]	SO:1001263	"An attribute describing a translational frameshift of +1." [SO:ke]	1074724	\N	\N	sequence	2	SO	recoded	plus_1_translationally_frameshifted
SO:0000863	SO:0000881	\N	"An attribute describing an mRNA feature." [SO:ke]	SO:1001263	"An attribute describing a translational frameshift of +1." [SO:ke]	1905915	\N	\N	sequence	3	SO	mRNA_attribute	plus_1_translationally_frameshifted
SO:0000237	SO:0000863	\N	"" []	SO:1001263	"An attribute describing a translational frameshift of +1." [SO:ke]	2930357	\N	\N	sequence	4	SO	transcript_attribute	plus_1_translationally_frameshifted
SO:0000733	SO:0000237	\N	"An attribute describing a located_sequence_feature." [SO:ke]	SO:1001263	"An attribute describing a translational frameshift of +1." [SO:ke]	4003346	\N	\N	sequence	5	SO	feature_attribute	plus_1_translationally_frameshifted
SO:0000400	SO:0000733	\N	"An attribute describes a quality of sequence." [SO:ke]	SO:1001263	"An attribute describing a translational frameshift of +1." [SO:ke]	4967431	\N	\N	sequence	6	SO	sequence_attribute	plus_1_translationally_frameshifted
SO:1001264	\N	\N	"A recoded_mRNA where translation was suspended at a particular codon and resumed at a particular non-overlapping downstream codon." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8811194&dopt=Abstract]	SO:1001264	"A recoded_mRNA where translation was suspended at a particular codon and resumed at a particular non-overlapping downstream codon." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8811194&dopt=Abstract]	47178	\N	\N	sequence	0	SO	mRNA_recoded_by_translational_bypass	mRNA_recoded_by_translational_bypass
SO:1001261	SO:1001264	\N	"The sequence of a mature mRNA transcript, modified before translation or during translation, usually by special cis-acting signals." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8811194&dopt=Abstract]	SO:1001264	"A recoded_mRNA where translation was suspended at a particular codon and resumed at a particular non-overlapping downstream codon." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8811194&dopt=Abstract]	492011	\N	\N	sequence	1	SO	recoded_mRNA	mRNA_recoded_by_translational_bypass
SO:0000234	SO:1001261	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:1001264	"A recoded_mRNA where translation was suspended at a particular codon and resumed at a particular non-overlapping downstream codon." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8811194&dopt=Abstract]	1074725	\N	SOFA	sequence	2	SO	mRNA	mRNA_recoded_by_translational_bypass
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:1001264	"A recoded_mRNA where translation was suspended at a particular codon and resumed at a particular non-overlapping downstream codon." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8811194&dopt=Abstract]	1905916	SOFA	SOFA	sequence	3	SO	mature_transcript	mRNA_recoded_by_translational_bypass
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001264	"A recoded_mRNA where translation was suspended at a particular codon and resumed at a particular non-overlapping downstream codon." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8811194&dopt=Abstract]	2930358	SOFA	SOFA	sequence	4	SO	transcript	mRNA_recoded_by_translational_bypass
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:1001264	"A recoded_mRNA where translation was suspended at a particular codon and resumed at a particular non-overlapping downstream codon." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8811194&dopt=Abstract]	4003347	SOFA	SOFA	sequence	5	SO	gene_member_region	mRNA_recoded_by_translational_bypass
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001264	"A recoded_mRNA where translation was suspended at a particular codon and resumed at a particular non-overlapping downstream codon." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8811194&dopt=Abstract]	4967432	SOFA	SOFA	sequence	6	SO	biological_region	mRNA_recoded_by_translational_bypass
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1001264	"A recoded_mRNA where translation was suspended at a particular codon and resumed at a particular non-overlapping downstream codon." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8811194&dopt=Abstract]	5741820	SOFA	SOFA	sequence	7	SO	region	mRNA_recoded_by_translational_bypass
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1001264	"A recoded_mRNA where translation was suspended at a particular codon and resumed at a particular non-overlapping downstream codon." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8811194&dopt=Abstract]	6311394	SOFA	SOFA	sequence	8	SO	sequence_feature	mRNA_recoded_by_translational_bypass
SO:1001265	\N	\N	"A recoded_mRNA that was modified by an alteration of codon meaning." [SO:ma]	SO:1001265	"A recoded_mRNA that was modified by an alteration of codon meaning." [SO:ma]	47179	\N	\N	sequence	0	SO	mRNA_recoded_by_codon_redefinition	mRNA_recoded_by_codon_redefinition
SO:1001261	SO:1001265	\N	"The sequence of a mature mRNA transcript, modified before translation or during translation, usually by special cis-acting signals." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8811194&dopt=Abstract]	SO:1001265	"A recoded_mRNA that was modified by an alteration of codon meaning." [SO:ma]	492012	\N	\N	sequence	1	SO	recoded_mRNA	mRNA_recoded_by_codon_redefinition
SO:0000234	SO:1001261	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:1001265	"A recoded_mRNA that was modified by an alteration of codon meaning." [SO:ma]	1074726	\N	SOFA	sequence	2	SO	mRNA	mRNA_recoded_by_codon_redefinition
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:1001265	"A recoded_mRNA that was modified by an alteration of codon meaning." [SO:ma]	1905917	SOFA	SOFA	sequence	3	SO	mature_transcript	mRNA_recoded_by_codon_redefinition
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001265	"A recoded_mRNA that was modified by an alteration of codon meaning." [SO:ma]	2930359	SOFA	SOFA	sequence	4	SO	transcript	mRNA_recoded_by_codon_redefinition
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:1001265	"A recoded_mRNA that was modified by an alteration of codon meaning." [SO:ma]	4003348	SOFA	SOFA	sequence	5	SO	gene_member_region	mRNA_recoded_by_codon_redefinition
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001265	"A recoded_mRNA that was modified by an alteration of codon meaning." [SO:ma]	4967433	SOFA	SOFA	sequence	6	SO	biological_region	mRNA_recoded_by_codon_redefinition
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1001265	"A recoded_mRNA that was modified by an alteration of codon meaning." [SO:ma]	5741821	SOFA	SOFA	sequence	7	SO	region	mRNA_recoded_by_codon_redefinition
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1001265	"A recoded_mRNA that was modified by an alteration of codon meaning." [SO:ma]	6311395	SOFA	SOFA	sequence	8	SO	sequence_feature	mRNA_recoded_by_codon_redefinition
SO:1001268	\N	\N	"A site in an mRNA sequence that stimulates the recoding of a region in the same mRNA." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12519954&dopt=Abstract]	SO:1001268	"A site in an mRNA sequence that stimulates the recoding of a region in the same mRNA." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12519954&dopt=Abstract]	47180	\N	\N	sequence	0	SO	recoding_stimulatory_region	recoding_stimulatory_region
SO:0000836	SO:1001268	\N	"A region of an mRNA." [SO:cb]	SO:1001268	"A site in an mRNA sequence that stimulates the recoding of a region in the same mRNA." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12519954&dopt=Abstract]	492013	\N	SOFA	sequence	1	SO	mRNA_region	recoding_stimulatory_region
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:1001268	"A site in an mRNA sequence that stimulates the recoding of a region in the same mRNA." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12519954&dopt=Abstract]	1074727	SOFA	SOFA	sequence	2	SO	mRNA	recoding_stimulatory_region
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:1001268	"A site in an mRNA sequence that stimulates the recoding of a region in the same mRNA." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12519954&dopt=Abstract]	1074728	SOFA	SOFA	sequence	2	SO	mature_transcript_region	recoding_stimulatory_region
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:1001268	"A site in an mRNA sequence that stimulates the recoding of a region in the same mRNA." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12519954&dopt=Abstract]	1905918	SOFA	SOFA	sequence	3	SO	mature_transcript	recoding_stimulatory_region
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:1001268	"A site in an mRNA sequence that stimulates the recoding of a region in the same mRNA." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12519954&dopt=Abstract]	1905919	SOFA	SOFA	sequence	3	SO	transcript_region	recoding_stimulatory_region
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001268	"A site in an mRNA sequence that stimulates the recoding of a region in the same mRNA." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12519954&dopt=Abstract]	2930360	SOFA	SOFA	sequence	4	SO	transcript	recoding_stimulatory_region
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001268	"A site in an mRNA sequence that stimulates the recoding of a region in the same mRNA." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12519954&dopt=Abstract]	2930361	SOFA	SOFA	sequence	4	SO	transcript	recoding_stimulatory_region
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001268	"A site in an mRNA sequence that stimulates the recoding of a region in the same mRNA." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12519954&dopt=Abstract]	2930362	SOFA	SOFA	sequence	4	SO	biological_region	recoding_stimulatory_region
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:1001268	"A site in an mRNA sequence that stimulates the recoding of a region in the same mRNA." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12519954&dopt=Abstract]	4003349	SOFA	SOFA	sequence	5	SO	gene_member_region	recoding_stimulatory_region
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1001268	"A site in an mRNA sequence that stimulates the recoding of a region in the same mRNA." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12519954&dopt=Abstract]	5741822	SOFA	SOFA	sequence	7	SO	region	recoding_stimulatory_region
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001268	"A site in an mRNA sequence that stimulates the recoding of a region in the same mRNA." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12519954&dopt=Abstract]	4967434	SOFA	SOFA	sequence	6	SO	biological_region	recoding_stimulatory_region
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1001268	"A site in an mRNA sequence that stimulates the recoding of a region in the same mRNA." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12519954&dopt=Abstract]	5996475	SOFA	SOFA	sequence	8	SO	sequence_feature	recoding_stimulatory_region
SO:1001269	\N	\N	"A non-canonical start codon with 4 base pairs." [SO:ke]	SO:1001269	"A non-canonical start codon with 4 base pairs." [SO:ke]	47181	\N	\N	sequence	0	SO	four_bp_start_codon	four_bp_start_codon
SO:0000680	SO:1001269	\N	"A start codon that is not the usual AUG sequence." [SO:ke]	SO:1001269	"A non-canonical start codon with 4 base pairs." [SO:ke]	492014	\N	\N	sequence	1	SO	non_canonical_start_codon	four_bp_start_codon
SO:0000318	SO:0000680	\N	"First codon to be translated by a ribosome." [SO:ke]	SO:1001269	"A non-canonical start codon with 4 base pairs." [SO:ke]	1074729	\N	SOFA	sequence	2	SO	start_codon	four_bp_start_codon
SO:0000360	SO:0000318	\N	"A set of (usually) three nucleotide bases in a DNA or RNA sequence, which together code for a unique amino acid or the termination of translation and are contained within the CDS." [SO:ke]	SO:1001269	"A non-canonical start codon with 4 base pairs." [SO:ke]	1905920	SOFA	SOFA	sequence	3	SO	codon	four_bp_start_codon
SO:0000851	SO:0000360	\N	"A region of a CDS." [SO:cb]	SO:1001269	"A non-canonical start codon with 4 base pairs." [SO:ke]	2930363	SOFA	SOFA	sequence	4	SO	CDS_region	four_bp_start_codon
SO:0000316	SO:0000851	\N	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	SO:1001269	"A non-canonical start codon with 4 base pairs." [SO:ke]	4003351	SOFA	SOFA	sequence	5	SO	CDS	four_bp_start_codon
SO:0000836	SO:0000851	\N	"A region of an mRNA." [SO:cb]	SO:1001269	"A non-canonical start codon with 4 base pairs." [SO:ke]	4003352	SOFA	SOFA	sequence	5	SO	mRNA_region	four_bp_start_codon
SO:0000836	SO:0000316	\N	"A region of an mRNA." [SO:cb]	SO:1001269	"A non-canonical start codon with 4 base pairs." [SO:ke]	4967436	SOFA	SOFA	sequence	6	SO	mRNA_region	four_bp_start_codon
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:1001269	"A non-canonical start codon with 4 base pairs." [SO:ke]	5741823	SOFA	SOFA	sequence	7	SO	mRNA	four_bp_start_codon
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:1001269	"A non-canonical start codon with 4 base pairs." [SO:ke]	5741824	SOFA	SOFA	sequence	7	SO	mature_transcript_region	four_bp_start_codon
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:1001269	"A non-canonical start codon with 4 base pairs." [SO:ke]	6146706	SOFA	SOFA	sequence	8	SO	mature_transcript	four_bp_start_codon
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:1001269	"A non-canonical start codon with 4 base pairs." [SO:ke]	6146707	SOFA	SOFA	sequence	8	SO	transcript_region	four_bp_start_codon
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001269	"A non-canonical start codon with 4 base pairs." [SO:ke]	6631426	SOFA	SOFA	sequence	9	SO	transcript	four_bp_start_codon
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001269	"A non-canonical start codon with 4 base pairs." [SO:ke]	6631427	SOFA	SOFA	sequence	9	SO	transcript	four_bp_start_codon
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001269	"A non-canonical start codon with 4 base pairs." [SO:ke]	6631428	SOFA	SOFA	sequence	9	SO	biological_region	four_bp_start_codon
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:1001269	"A non-canonical start codon with 4 base pairs." [SO:ke]	6925096	SOFA	SOFA	sequence	10	SO	gene_member_region	four_bp_start_codon
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1001269	"A non-canonical start codon with 4 base pairs." [SO:ke]	7208245	SOFA	SOFA	sequence	12	SO	region	four_bp_start_codon
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001269	"A non-canonical start codon with 4 base pairs." [SO:ke]	7098889	SOFA	SOFA	sequence	11	SO	biological_region	four_bp_start_codon
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1001269	"A non-canonical start codon with 4 base pairs." [SO:ke]	7284161	SOFA	SOFA	sequence	13	SO	sequence_feature	four_bp_start_codon
SO:1001271	\N	\N	"An intron characteristic of Archaeal tRNA and rRNA genes, where intron transcript generates a bulge-helix-bulge motif that is recognised by a splicing endoribonuclease." [PMID:9301331, SO:ma]	SO:1001271	"An intron characteristic of Archaeal tRNA and rRNA genes, where intron transcript generates a bulge-helix-bulge motif that is recognised by a splicing endoribonuclease." [PMID:9301331, SO:ma]	47182	\N	\N	sequence	0	SO	archaeal_intron	archaeal_intron
SO:0001216	SO:1001271	\N	"An intron that spliced via endonucleolytic cleavage and ligation rather than transesterification." [SO:ke]	SO:1001271	"An intron characteristic of Archaeal tRNA and rRNA genes, where intron transcript generates a bulge-helix-bulge motif that is recognised by a splicing endoribonuclease." [PMID:9301331, SO:ma]	492015	\N	\N	sequence	1	SO	endonuclease_spliced_intron	archaeal_intron
SO:0000188	SO:0001216	\N	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:1001271	"An intron characteristic of Archaeal tRNA and rRNA genes, where intron transcript generates a bulge-helix-bulge motif that is recognised by a splicing endoribonuclease." [PMID:9301331, SO:ma]	1074730	\N	SOFA	sequence	2	SO	intron	archaeal_intron
SO:0000835	SO:0000188	\N	"A part of a primary transcript." [SO:ke]	SO:1001271	"An intron characteristic of Archaeal tRNA and rRNA genes, where intron transcript generates a bulge-helix-bulge motif that is recognised by a splicing endoribonuclease." [PMID:9301331, SO:ma]	1905921	SOFA	SOFA	sequence	3	SO	primary_transcript_region	archaeal_intron
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:1001271	"An intron characteristic of Archaeal tRNA and rRNA genes, where intron transcript generates a bulge-helix-bulge motif that is recognised by a splicing endoribonuclease." [PMID:9301331, SO:ma]	2930364	SOFA	SOFA	sequence	4	SO	primary_transcript	archaeal_intron
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:1001271	"An intron characteristic of Archaeal tRNA and rRNA genes, where intron transcript generates a bulge-helix-bulge motif that is recognised by a splicing endoribonuclease." [PMID:9301331, SO:ma]	2930365	SOFA	SOFA	sequence	4	SO	transcript_region	archaeal_intron
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001271	"An intron characteristic of Archaeal tRNA and rRNA genes, where intron transcript generates a bulge-helix-bulge motif that is recognised by a splicing endoribonuclease." [PMID:9301331, SO:ma]	4003353	SOFA	SOFA	sequence	5	SO	transcript	archaeal_intron
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001271	"An intron characteristic of Archaeal tRNA and rRNA genes, where intron transcript generates a bulge-helix-bulge motif that is recognised by a splicing endoribonuclease." [PMID:9301331, SO:ma]	4003354	SOFA	SOFA	sequence	5	SO	transcript	archaeal_intron
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001271	"An intron characteristic of Archaeal tRNA and rRNA genes, where intron transcript generates a bulge-helix-bulge motif that is recognised by a splicing endoribonuclease." [PMID:9301331, SO:ma]	4003355	SOFA	SOFA	sequence	5	SO	biological_region	archaeal_intron
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:1001271	"An intron characteristic of Archaeal tRNA and rRNA genes, where intron transcript generates a bulge-helix-bulge motif that is recognised by a splicing endoribonuclease." [PMID:9301331, SO:ma]	4967439	SOFA	SOFA	sequence	6	SO	gene_member_region	archaeal_intron
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1001271	"An intron characteristic of Archaeal tRNA and rRNA genes, where intron transcript generates a bulge-helix-bulge motif that is recognised by a splicing endoribonuclease." [PMID:9301331, SO:ma]	6311399	SOFA	SOFA	sequence	8	SO	region	archaeal_intron
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001271	"An intron characteristic of Archaeal tRNA and rRNA genes, where intron transcript generates a bulge-helix-bulge motif that is recognised by a splicing endoribonuclease." [PMID:9301331, SO:ma]	5741827	SOFA	SOFA	sequence	7	SO	biological_region	archaeal_intron
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1001271	"An intron characteristic of Archaeal tRNA and rRNA genes, where intron transcript generates a bulge-helix-bulge motif that is recognised by a splicing endoribonuclease." [PMID:9301331, SO:ma]	6550302	SOFA	SOFA	sequence	9	SO	sequence_feature	archaeal_intron
SO:1001272	\N	\N	"An intron found in tRNA that is spliced via endonucleolytic cleavage and ligation rather than transesterification." [SO:ke]	SO:1001272	"An intron found in tRNA that is spliced via endonucleolytic cleavage and ligation rather than transesterification." [SO:ke]	47183	\N	\N	sequence	0	SO	tRNA_intron	tRNA_intron
SO:0001216	SO:1001272	\N	"An intron that spliced via endonucleolytic cleavage and ligation rather than transesterification." [SO:ke]	SO:1001272	"An intron found in tRNA that is spliced via endonucleolytic cleavage and ligation rather than transesterification." [SO:ke]	492016	\N	\N	sequence	1	SO	endonuclease_spliced_intron	tRNA_intron
SO:0000188	SO:0001216	\N	"A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (exons) on either side of it." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html]	SO:1001272	"An intron found in tRNA that is spliced via endonucleolytic cleavage and ligation rather than transesterification." [SO:ke]	1074731	\N	SOFA	sequence	2	SO	intron	tRNA_intron
SO:0000835	SO:0000188	\N	"A part of a primary transcript." [SO:ke]	SO:1001272	"An intron found in tRNA that is spliced via endonucleolytic cleavage and ligation rather than transesterification." [SO:ke]	1905922	SOFA	SOFA	sequence	3	SO	primary_transcript_region	tRNA_intron
SO:0000185	SO:0000835	\N	"A transcript that in its initial state requires modification to be functional." [SO:ma]	SO:1001272	"An intron found in tRNA that is spliced via endonucleolytic cleavage and ligation rather than transesterification." [SO:ke]	2930366	SOFA	SOFA	sequence	4	SO	primary_transcript	tRNA_intron
SO:0000833	SO:0000835	\N	"A region of a transcript." [SO:ke]	SO:1001272	"An intron found in tRNA that is spliced via endonucleolytic cleavage and ligation rather than transesterification." [SO:ke]	2930367	SOFA	SOFA	sequence	4	SO	transcript_region	tRNA_intron
SO:0000673	SO:0000185	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001272	"An intron found in tRNA that is spliced via endonucleolytic cleavage and ligation rather than transesterification." [SO:ke]	4003356	SOFA	SOFA	sequence	5	SO	transcript	tRNA_intron
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001272	"An intron found in tRNA that is spliced via endonucleolytic cleavage and ligation rather than transesterification." [SO:ke]	4003357	SOFA	SOFA	sequence	5	SO	transcript	tRNA_intron
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001272	"An intron found in tRNA that is spliced via endonucleolytic cleavage and ligation rather than transesterification." [SO:ke]	4003358	SOFA	SOFA	sequence	5	SO	biological_region	tRNA_intron
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:1001272	"An intron found in tRNA that is spliced via endonucleolytic cleavage and ligation rather than transesterification." [SO:ke]	4967441	SOFA	SOFA	sequence	6	SO	gene_member_region	tRNA_intron
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1001272	"An intron found in tRNA that is spliced via endonucleolytic cleavage and ligation rather than transesterification." [SO:ke]	6311400	SOFA	SOFA	sequence	8	SO	region	tRNA_intron
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001272	"An intron found in tRNA that is spliced via endonucleolytic cleavage and ligation rather than transesterification." [SO:ke]	5741829	SOFA	SOFA	sequence	7	SO	biological_region	tRNA_intron
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1001272	"An intron found in tRNA that is spliced via endonucleolytic cleavage and ligation rather than transesterification." [SO:ke]	6550303	SOFA	SOFA	sequence	9	SO	sequence_feature	tRNA_intron
SO:1001273	\N	\N	"A non-canonical start codon of sequence CTG." [SO:ke]	SO:1001273	"A non-canonical start codon of sequence CTG." [SO:ke]	47184	\N	\N	sequence	0	SO	CTG_start_codon	CTG_start_codon
SO:0000680	SO:1001273	\N	"A start codon that is not the usual AUG sequence." [SO:ke]	SO:1001273	"A non-canonical start codon of sequence CTG." [SO:ke]	492017	\N	\N	sequence	1	SO	non_canonical_start_codon	CTG_start_codon
SO:0000318	SO:0000680	\N	"First codon to be translated by a ribosome." [SO:ke]	SO:1001273	"A non-canonical start codon of sequence CTG." [SO:ke]	1074732	\N	SOFA	sequence	2	SO	start_codon	CTG_start_codon
SO:0000360	SO:0000318	\N	"A set of (usually) three nucleotide bases in a DNA or RNA sequence, which together code for a unique amino acid or the termination of translation and are contained within the CDS." [SO:ke]	SO:1001273	"A non-canonical start codon of sequence CTG." [SO:ke]	1905923	SOFA	SOFA	sequence	3	SO	codon	CTG_start_codon
SO:0000851	SO:0000360	\N	"A region of a CDS." [SO:cb]	SO:1001273	"A non-canonical start codon of sequence CTG." [SO:ke]	2930368	SOFA	SOFA	sequence	4	SO	CDS_region	CTG_start_codon
SO:0000316	SO:0000851	\N	"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon." [SO:ma]	SO:1001273	"A non-canonical start codon of sequence CTG." [SO:ke]	4003359	SOFA	SOFA	sequence	5	SO	CDS	CTG_start_codon
SO:0000836	SO:0000851	\N	"A region of an mRNA." [SO:cb]	SO:1001273	"A non-canonical start codon of sequence CTG." [SO:ke]	4003360	SOFA	SOFA	sequence	5	SO	mRNA_region	CTG_start_codon
SO:0000836	SO:0000316	\N	"A region of an mRNA." [SO:cb]	SO:1001273	"A non-canonical start codon of sequence CTG." [SO:ke]	4967443	SOFA	SOFA	sequence	6	SO	mRNA_region	CTG_start_codon
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:1001273	"A non-canonical start codon of sequence CTG." [SO:ke]	5741831	SOFA	SOFA	sequence	7	SO	mRNA	CTG_start_codon
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:1001273	"A non-canonical start codon of sequence CTG." [SO:ke]	5741832	SOFA	SOFA	sequence	7	SO	mature_transcript_region	CTG_start_codon
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:1001273	"A non-canonical start codon of sequence CTG." [SO:ke]	6146708	SOFA	SOFA	sequence	8	SO	mature_transcript	CTG_start_codon
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:1001273	"A non-canonical start codon of sequence CTG." [SO:ke]	6146709	SOFA	SOFA	sequence	8	SO	transcript_region	CTG_start_codon
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001273	"A non-canonical start codon of sequence CTG." [SO:ke]	6631429	SOFA	SOFA	sequence	9	SO	transcript	CTG_start_codon
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001273	"A non-canonical start codon of sequence CTG." [SO:ke]	6631430	SOFA	SOFA	sequence	9	SO	transcript	CTG_start_codon
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001273	"A non-canonical start codon of sequence CTG." [SO:ke]	6631431	SOFA	SOFA	sequence	9	SO	biological_region	CTG_start_codon
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:1001273	"A non-canonical start codon of sequence CTG." [SO:ke]	6925098	SOFA	SOFA	sequence	10	SO	gene_member_region	CTG_start_codon
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1001273	"A non-canonical start codon of sequence CTG." [SO:ke]	7208246	SOFA	SOFA	sequence	12	SO	region	CTG_start_codon
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001273	"A non-canonical start codon of sequence CTG." [SO:ke]	7098891	SOFA	SOFA	sequence	11	SO	biological_region	CTG_start_codon
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1001273	"A non-canonical start codon of sequence CTG." [SO:ke]	7284162	SOFA	SOFA	sequence	13	SO	sequence_feature	CTG_start_codon
SO:1001274	\N	\N	"The incorporation of selenocysteine into a protein sequence is directed by an in-frame UGA codon (usually a stop codon) within the coding region of the mRNA. Selenoprotein mRNAs contain a conserved secondary structure in the 3' UTR that is required for the distinction of UGA stop from UGA selenocysteine. The selenocysteine insertion sequence (SECIS) is around 60 nt in length and adopts a hairpin structure which is sufficiently well-defined and conserved to act as a computational screen for selenoprotein genes." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00031]	SO:1001274	"The incorporation of selenocysteine into a protein sequence is directed by an in-frame UGA codon (usually a stop codon) within the coding region of the mRNA. Selenoprotein mRNAs contain a conserved secondary structure in the 3' UTR that is required for the distinction of UGA stop from UGA selenocysteine. The selenocysteine insertion sequence (SECIS) is around 60 nt in length and adopts a hairpin structure which is sufficiently well-defined and conserved to act as a computational screen for selenoprotein genes." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00031]	47185	\N	\N	sequence	0	SO	SECIS_element	SECIS_element
SO:1001268	SO:1001274	\N	"A site in an mRNA sequence that stimulates the recoding of a region in the same mRNA." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12519954&dopt=Abstract]	SO:1001274	"The incorporation of selenocysteine into a protein sequence is directed by an in-frame UGA codon (usually a stop codon) within the coding region of the mRNA. Selenoprotein mRNAs contain a conserved secondary structure in the 3' UTR that is required for the distinction of UGA stop from UGA selenocysteine. The selenocysteine insertion sequence (SECIS) is around 60 nt in length and adopts a hairpin structure which is sufficiently well-defined and conserved to act as a computational screen for selenoprotein genes." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00031]	492018	\N	\N	sequence	1	SO	recoding_stimulatory_region	SECIS_element
SO:0000836	SO:1001268	\N	"A region of an mRNA." [SO:cb]	SO:1001274	"The incorporation of selenocysteine into a protein sequence is directed by an in-frame UGA codon (usually a stop codon) within the coding region of the mRNA. Selenoprotein mRNAs contain a conserved secondary structure in the 3' UTR that is required for the distinction of UGA stop from UGA selenocysteine. The selenocysteine insertion sequence (SECIS) is around 60 nt in length and adopts a hairpin structure which is sufficiently well-defined and conserved to act as a computational screen for selenoprotein genes." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00031]	1074733	\N	SOFA	sequence	2	SO	mRNA_region	SECIS_element
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:1001274	"The incorporation of selenocysteine into a protein sequence is directed by an in-frame UGA codon (usually a stop codon) within the coding region of the mRNA. Selenoprotein mRNAs contain a conserved secondary structure in the 3' UTR that is required for the distinction of UGA stop from UGA selenocysteine. The selenocysteine insertion sequence (SECIS) is around 60 nt in length and adopts a hairpin structure which is sufficiently well-defined and conserved to act as a computational screen for selenoprotein genes." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00031]	1905924	SOFA	SOFA	sequence	3	SO	mRNA	SECIS_element
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:1001274	"The incorporation of selenocysteine into a protein sequence is directed by an in-frame UGA codon (usually a stop codon) within the coding region of the mRNA. Selenoprotein mRNAs contain a conserved secondary structure in the 3' UTR that is required for the distinction of UGA stop from UGA selenocysteine. The selenocysteine insertion sequence (SECIS) is around 60 nt in length and adopts a hairpin structure which is sufficiently well-defined and conserved to act as a computational screen for selenoprotein genes." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00031]	1905925	SOFA	SOFA	sequence	3	SO	mature_transcript_region	SECIS_element
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:1001274	"The incorporation of selenocysteine into a protein sequence is directed by an in-frame UGA codon (usually a stop codon) within the coding region of the mRNA. Selenoprotein mRNAs contain a conserved secondary structure in the 3' UTR that is required for the distinction of UGA stop from UGA selenocysteine. The selenocysteine insertion sequence (SECIS) is around 60 nt in length and adopts a hairpin structure which is sufficiently well-defined and conserved to act as a computational screen for selenoprotein genes." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00031]	2930369	SOFA	SOFA	sequence	4	SO	mature_transcript	SECIS_element
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:1001274	"The incorporation of selenocysteine into a protein sequence is directed by an in-frame UGA codon (usually a stop codon) within the coding region of the mRNA. Selenoprotein mRNAs contain a conserved secondary structure in the 3' UTR that is required for the distinction of UGA stop from UGA selenocysteine. The selenocysteine insertion sequence (SECIS) is around 60 nt in length and adopts a hairpin structure which is sufficiently well-defined and conserved to act as a computational screen for selenoprotein genes." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00031]	2930370	SOFA	SOFA	sequence	4	SO	transcript_region	SECIS_element
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001274	"The incorporation of selenocysteine into a protein sequence is directed by an in-frame UGA codon (usually a stop codon) within the coding region of the mRNA. Selenoprotein mRNAs contain a conserved secondary structure in the 3' UTR that is required for the distinction of UGA stop from UGA selenocysteine. The selenocysteine insertion sequence (SECIS) is around 60 nt in length and adopts a hairpin structure which is sufficiently well-defined and conserved to act as a computational screen for selenoprotein genes." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00031]	4003361	SOFA	SOFA	sequence	5	SO	transcript	SECIS_element
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001274	"The incorporation of selenocysteine into a protein sequence is directed by an in-frame UGA codon (usually a stop codon) within the coding region of the mRNA. Selenoprotein mRNAs contain a conserved secondary structure in the 3' UTR that is required for the distinction of UGA stop from UGA selenocysteine. The selenocysteine insertion sequence (SECIS) is around 60 nt in length and adopts a hairpin structure which is sufficiently well-defined and conserved to act as a computational screen for selenoprotein genes." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00031]	4003362	SOFA	SOFA	sequence	5	SO	transcript	SECIS_element
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001274	"The incorporation of selenocysteine into a protein sequence is directed by an in-frame UGA codon (usually a stop codon) within the coding region of the mRNA. Selenoprotein mRNAs contain a conserved secondary structure in the 3' UTR that is required for the distinction of UGA stop from UGA selenocysteine. The selenocysteine insertion sequence (SECIS) is around 60 nt in length and adopts a hairpin structure which is sufficiently well-defined and conserved to act as a computational screen for selenoprotein genes." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00031]	4003363	SOFA	SOFA	sequence	5	SO	biological_region	SECIS_element
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:1001274	"The incorporation of selenocysteine into a protein sequence is directed by an in-frame UGA codon (usually a stop codon) within the coding region of the mRNA. Selenoprotein mRNAs contain a conserved secondary structure in the 3' UTR that is required for the distinction of UGA stop from UGA selenocysteine. The selenocysteine insertion sequence (SECIS) is around 60 nt in length and adopts a hairpin structure which is sufficiently well-defined and conserved to act as a computational screen for selenoprotein genes." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00031]	4967446	SOFA	SOFA	sequence	6	SO	gene_member_region	SECIS_element
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1001274	"The incorporation of selenocysteine into a protein sequence is directed by an in-frame UGA codon (usually a stop codon) within the coding region of the mRNA. Selenoprotein mRNAs contain a conserved secondary structure in the 3' UTR that is required for the distinction of UGA stop from UGA selenocysteine. The selenocysteine insertion sequence (SECIS) is around 60 nt in length and adopts a hairpin structure which is sufficiently well-defined and conserved to act as a computational screen for selenoprotein genes." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00031]	6311404	SOFA	SOFA	sequence	8	SO	region	SECIS_element
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001274	"The incorporation of selenocysteine into a protein sequence is directed by an in-frame UGA codon (usually a stop codon) within the coding region of the mRNA. Selenoprotein mRNAs contain a conserved secondary structure in the 3' UTR that is required for the distinction of UGA stop from UGA selenocysteine. The selenocysteine insertion sequence (SECIS) is around 60 nt in length and adopts a hairpin structure which is sufficiently well-defined and conserved to act as a computational screen for selenoprotein genes." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00031]	5741835	SOFA	SOFA	sequence	7	SO	biological_region	SECIS_element
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1001274	"The incorporation of selenocysteine into a protein sequence is directed by an in-frame UGA codon (usually a stop codon) within the coding region of the mRNA. Selenoprotein mRNAs contain a conserved secondary structure in the 3' UTR that is required for the distinction of UGA stop from UGA selenocysteine. The selenocysteine insertion sequence (SECIS) is around 60 nt in length and adopts a hairpin structure which is sufficiently well-defined and conserved to act as a computational screen for selenoprotein genes." [http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00031]	6550304	SOFA	SOFA	sequence	9	SO	sequence_feature	SECIS_element
SO:1001275	\N	\N	"Sequence coding for a short, single-stranded, DNA sequence via a retrotransposed RNA intermediate; characteristic of some microbial genomes." [SO:ma]	SO:1001275	"Sequence coding for a short, single-stranded, DNA sequence via a retrotransposed RNA intermediate; characteristic of some microbial genomes." [SO:ma]	47186	\N	\N	sequence	0	SO	retron	retron
SO:0001411	SO:1001275	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001275	"Sequence coding for a short, single-stranded, DNA sequence via a retrotransposed RNA intermediate; characteristic of some microbial genomes." [SO:ma]	492019	\N	SOFA	sequence	1	SO	biological_region	retron
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1001275	"Sequence coding for a short, single-stranded, DNA sequence via a retrotransposed RNA intermediate; characteristic of some microbial genomes." [SO:ma]	1074734	SOFA	SOFA	sequence	2	SO	region	retron
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1001275	"Sequence coding for a short, single-stranded, DNA sequence via a retrotransposed RNA intermediate; characteristic of some microbial genomes." [SO:ma]	1905926	SOFA	SOFA	sequence	3	SO	sequence_feature	retron
SO:1001277	\N	\N	"The recoding stimulatory signal located downstream of the recoding site." [SO:ke]	SO:1001277	"The recoding stimulatory signal located downstream of the recoding site." [SO:ke]	47187	\N	\N	sequence	0	SO	three_prime_recoding_site	three_prime_recoding_site
SO:1001268	SO:1001277	\N	"A site in an mRNA sequence that stimulates the recoding of a region in the same mRNA." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12519954&dopt=Abstract]	SO:1001277	"The recoding stimulatory signal located downstream of the recoding site." [SO:ke]	492020	\N	\N	sequence	1	SO	recoding_stimulatory_region	three_prime_recoding_site
SO:0000836	SO:1001268	\N	"A region of an mRNA." [SO:cb]	SO:1001277	"The recoding stimulatory signal located downstream of the recoding site." [SO:ke]	1074735	\N	SOFA	sequence	2	SO	mRNA_region	three_prime_recoding_site
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:1001277	"The recoding stimulatory signal located downstream of the recoding site." [SO:ke]	1905927	SOFA	SOFA	sequence	3	SO	mRNA	three_prime_recoding_site
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:1001277	"The recoding stimulatory signal located downstream of the recoding site." [SO:ke]	1905928	SOFA	SOFA	sequence	3	SO	mature_transcript_region	three_prime_recoding_site
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:1001277	"The recoding stimulatory signal located downstream of the recoding site." [SO:ke]	2930371	SOFA	SOFA	sequence	4	SO	mature_transcript	three_prime_recoding_site
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:1001277	"The recoding stimulatory signal located downstream of the recoding site." [SO:ke]	2930372	SOFA	SOFA	sequence	4	SO	transcript_region	three_prime_recoding_site
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001277	"The recoding stimulatory signal located downstream of the recoding site." [SO:ke]	4003364	SOFA	SOFA	sequence	5	SO	transcript	three_prime_recoding_site
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001277	"The recoding stimulatory signal located downstream of the recoding site." [SO:ke]	4003365	SOFA	SOFA	sequence	5	SO	transcript	three_prime_recoding_site
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001277	"The recoding stimulatory signal located downstream of the recoding site." [SO:ke]	4003366	SOFA	SOFA	sequence	5	SO	biological_region	three_prime_recoding_site
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:1001277	"The recoding stimulatory signal located downstream of the recoding site." [SO:ke]	4967448	SOFA	SOFA	sequence	6	SO	gene_member_region	three_prime_recoding_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1001277	"The recoding stimulatory signal located downstream of the recoding site." [SO:ke]	6311405	SOFA	SOFA	sequence	8	SO	region	three_prime_recoding_site
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001277	"The recoding stimulatory signal located downstream of the recoding site." [SO:ke]	5741837	SOFA	SOFA	sequence	7	SO	biological_region	three_prime_recoding_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1001277	"The recoding stimulatory signal located downstream of the recoding site." [SO:ke]	6550305	SOFA	SOFA	sequence	9	SO	sequence_feature	three_prime_recoding_site
SO:1001279	\N	\N	"A recoding stimulatory region, the stem-loop secondary structural element is downstream of the redefined region." [PMID:12519954, SO:ke]	SO:1001279	"A recoding stimulatory region, the stem-loop secondary structural element is downstream of the redefined region." [PMID:12519954, SO:ke]	47188	\N	\N	sequence	0	SO	three_prime_stem_loop_structure	three_prime_stem_loop_structure
SO:1001277	SO:1001279	\N	"The recoding stimulatory signal located downstream of the recoding site." [SO:ke]	SO:1001279	"A recoding stimulatory region, the stem-loop secondary structural element is downstream of the redefined region." [PMID:12519954, SO:ke]	492021	\N	\N	sequence	1	SO	three_prime_recoding_site	three_prime_stem_loop_structure
SO:1001268	SO:1001277	\N	"A site in an mRNA sequence that stimulates the recoding of a region in the same mRNA." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12519954&dopt=Abstract]	SO:1001279	"A recoding stimulatory region, the stem-loop secondary structural element is downstream of the redefined region." [PMID:12519954, SO:ke]	1074736	\N	\N	sequence	2	SO	recoding_stimulatory_region	three_prime_stem_loop_structure
SO:0000836	SO:1001268	\N	"A region of an mRNA." [SO:cb]	SO:1001279	"A recoding stimulatory region, the stem-loop secondary structural element is downstream of the redefined region." [PMID:12519954, SO:ke]	1905929	\N	SOFA	sequence	3	SO	mRNA_region	three_prime_stem_loop_structure
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:1001279	"A recoding stimulatory region, the stem-loop secondary structural element is downstream of the redefined region." [PMID:12519954, SO:ke]	2930373	SOFA	SOFA	sequence	4	SO	mRNA	three_prime_stem_loop_structure
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:1001279	"A recoding stimulatory region, the stem-loop secondary structural element is downstream of the redefined region." [PMID:12519954, SO:ke]	2930374	SOFA	SOFA	sequence	4	SO	mature_transcript_region	three_prime_stem_loop_structure
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:1001279	"A recoding stimulatory region, the stem-loop secondary structural element is downstream of the redefined region." [PMID:12519954, SO:ke]	4003367	SOFA	SOFA	sequence	5	SO	mature_transcript	three_prime_stem_loop_structure
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:1001279	"A recoding stimulatory region, the stem-loop secondary structural element is downstream of the redefined region." [PMID:12519954, SO:ke]	4003368	SOFA	SOFA	sequence	5	SO	transcript_region	three_prime_stem_loop_structure
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001279	"A recoding stimulatory region, the stem-loop secondary structural element is downstream of the redefined region." [PMID:12519954, SO:ke]	4967450	SOFA	SOFA	sequence	6	SO	transcript	three_prime_stem_loop_structure
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001279	"A recoding stimulatory region, the stem-loop secondary structural element is downstream of the redefined region." [PMID:12519954, SO:ke]	4967451	SOFA	SOFA	sequence	6	SO	transcript	three_prime_stem_loop_structure
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001279	"A recoding stimulatory region, the stem-loop secondary structural element is downstream of the redefined region." [PMID:12519954, SO:ke]	4967452	SOFA	SOFA	sequence	6	SO	biological_region	three_prime_stem_loop_structure
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:1001279	"A recoding stimulatory region, the stem-loop secondary structural element is downstream of the redefined region." [PMID:12519954, SO:ke]	5741839	SOFA	SOFA	sequence	7	SO	gene_member_region	three_prime_stem_loop_structure
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1001279	"A recoding stimulatory region, the stem-loop secondary structural element is downstream of the redefined region." [PMID:12519954, SO:ke]	6699573	SOFA	SOFA	sequence	9	SO	region	three_prime_stem_loop_structure
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001279	"A recoding stimulatory region, the stem-loop secondary structural element is downstream of the redefined region." [PMID:12519954, SO:ke]	6311406	SOFA	SOFA	sequence	8	SO	biological_region	three_prime_stem_loop_structure
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1001279	"A recoding stimulatory region, the stem-loop secondary structural element is downstream of the redefined region." [PMID:12519954, SO:ke]	6888950	SOFA	SOFA	sequence	10	SO	sequence_feature	three_prime_stem_loop_structure
SO:1001280	\N	\N	"The recoding stimulatory signal located upstream of the recoding site." [SO:ke]	SO:1001280	"The recoding stimulatory signal located upstream of the recoding site." [SO:ke]	47189	\N	\N	sequence	0	SO	five_prime_recoding_site	five_prime_recoding_site
SO:1001268	SO:1001280	\N	"A site in an mRNA sequence that stimulates the recoding of a region in the same mRNA." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12519954&dopt=Abstract]	SO:1001280	"The recoding stimulatory signal located upstream of the recoding site." [SO:ke]	492022	\N	\N	sequence	1	SO	recoding_stimulatory_region	five_prime_recoding_site
SO:0000836	SO:1001268	\N	"A region of an mRNA." [SO:cb]	SO:1001280	"The recoding stimulatory signal located upstream of the recoding site." [SO:ke]	1074737	\N	SOFA	sequence	2	SO	mRNA_region	five_prime_recoding_site
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:1001280	"The recoding stimulatory signal located upstream of the recoding site." [SO:ke]	1905930	SOFA	SOFA	sequence	3	SO	mRNA	five_prime_recoding_site
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:1001280	"The recoding stimulatory signal located upstream of the recoding site." [SO:ke]	1905931	SOFA	SOFA	sequence	3	SO	mature_transcript_region	five_prime_recoding_site
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:1001280	"The recoding stimulatory signal located upstream of the recoding site." [SO:ke]	2930375	SOFA	SOFA	sequence	4	SO	mature_transcript	five_prime_recoding_site
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:1001280	"The recoding stimulatory signal located upstream of the recoding site." [SO:ke]	2930376	SOFA	SOFA	sequence	4	SO	transcript_region	five_prime_recoding_site
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001280	"The recoding stimulatory signal located upstream of the recoding site." [SO:ke]	4003369	SOFA	SOFA	sequence	5	SO	transcript	five_prime_recoding_site
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001280	"The recoding stimulatory signal located upstream of the recoding site." [SO:ke]	4003370	SOFA	SOFA	sequence	5	SO	transcript	five_prime_recoding_site
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001280	"The recoding stimulatory signal located upstream of the recoding site." [SO:ke]	4003371	SOFA	SOFA	sequence	5	SO	biological_region	five_prime_recoding_site
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:1001280	"The recoding stimulatory signal located upstream of the recoding site." [SO:ke]	4967453	SOFA	SOFA	sequence	6	SO	gene_member_region	five_prime_recoding_site
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1001280	"The recoding stimulatory signal located upstream of the recoding site." [SO:ke]	6311408	SOFA	SOFA	sequence	8	SO	region	five_prime_recoding_site
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001280	"The recoding stimulatory signal located upstream of the recoding site." [SO:ke]	5741841	SOFA	SOFA	sequence	7	SO	biological_region	five_prime_recoding_site
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1001280	"The recoding stimulatory signal located upstream of the recoding site." [SO:ke]	6550306	SOFA	SOFA	sequence	9	SO	sequence_feature	five_prime_recoding_site
SO:1001281	\N	\N	"Four base pair sequence immediately downstream of the redefined region. The redefined region is a frameshift site. The quadruplet is 2 overlapping codons." [PMID:12519954, SO:ke]	SO:1001281	"Four base pair sequence immediately downstream of the redefined region. The redefined region is a frameshift site. The quadruplet is 2 overlapping codons." [PMID:12519954, SO:ke]	47190	\N	\N	sequence	0	SO	flanking_three_prime_quadruplet_recoding_signal	flanking_three_prime_quadruplet_recoding_signal
SO:1001277	SO:1001281	\N	"The recoding stimulatory signal located downstream of the recoding site." [SO:ke]	SO:1001281	"Four base pair sequence immediately downstream of the redefined region. The redefined region is a frameshift site. The quadruplet is 2 overlapping codons." [PMID:12519954, SO:ke]	492023	\N	\N	sequence	1	SO	three_prime_recoding_site	flanking_three_prime_quadruplet_recoding_signal
SO:1001268	SO:1001277	\N	"A site in an mRNA sequence that stimulates the recoding of a region in the same mRNA." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12519954&dopt=Abstract]	SO:1001281	"Four base pair sequence immediately downstream of the redefined region. The redefined region is a frameshift site. The quadruplet is 2 overlapping codons." [PMID:12519954, SO:ke]	1074738	\N	\N	sequence	2	SO	recoding_stimulatory_region	flanking_three_prime_quadruplet_recoding_signal
SO:0000836	SO:1001268	\N	"A region of an mRNA." [SO:cb]	SO:1001281	"Four base pair sequence immediately downstream of the redefined region. The redefined region is a frameshift site. The quadruplet is 2 overlapping codons." [PMID:12519954, SO:ke]	1905932	\N	SOFA	sequence	3	SO	mRNA_region	flanking_three_prime_quadruplet_recoding_signal
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:1001281	"Four base pair sequence immediately downstream of the redefined region. The redefined region is a frameshift site. The quadruplet is 2 overlapping codons." [PMID:12519954, SO:ke]	2930377	SOFA	SOFA	sequence	4	SO	mRNA	flanking_three_prime_quadruplet_recoding_signal
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:1001281	"Four base pair sequence immediately downstream of the redefined region. The redefined region is a frameshift site. The quadruplet is 2 overlapping codons." [PMID:12519954, SO:ke]	2930378	SOFA	SOFA	sequence	4	SO	mature_transcript_region	flanking_three_prime_quadruplet_recoding_signal
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:1001281	"Four base pair sequence immediately downstream of the redefined region. The redefined region is a frameshift site. The quadruplet is 2 overlapping codons." [PMID:12519954, SO:ke]	4003372	SOFA	SOFA	sequence	5	SO	mature_transcript	flanking_three_prime_quadruplet_recoding_signal
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:1001281	"Four base pair sequence immediately downstream of the redefined region. The redefined region is a frameshift site. The quadruplet is 2 overlapping codons." [PMID:12519954, SO:ke]	4003373	SOFA	SOFA	sequence	5	SO	transcript_region	flanking_three_prime_quadruplet_recoding_signal
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001281	"Four base pair sequence immediately downstream of the redefined region. The redefined region is a frameshift site. The quadruplet is 2 overlapping codons." [PMID:12519954, SO:ke]	4967455	SOFA	SOFA	sequence	6	SO	transcript	flanking_three_prime_quadruplet_recoding_signal
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001281	"Four base pair sequence immediately downstream of the redefined region. The redefined region is a frameshift site. The quadruplet is 2 overlapping codons." [PMID:12519954, SO:ke]	4967456	SOFA	SOFA	sequence	6	SO	transcript	flanking_three_prime_quadruplet_recoding_signal
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001281	"Four base pair sequence immediately downstream of the redefined region. The redefined region is a frameshift site. The quadruplet is 2 overlapping codons." [PMID:12519954, SO:ke]	4967457	SOFA	SOFA	sequence	6	SO	biological_region	flanking_three_prime_quadruplet_recoding_signal
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:1001281	"Four base pair sequence immediately downstream of the redefined region. The redefined region is a frameshift site. The quadruplet is 2 overlapping codons." [PMID:12519954, SO:ke]	5741843	SOFA	SOFA	sequence	7	SO	gene_member_region	flanking_three_prime_quadruplet_recoding_signal
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1001281	"Four base pair sequence immediately downstream of the redefined region. The redefined region is a frameshift site. The quadruplet is 2 overlapping codons." [PMID:12519954, SO:ke]	6699574	SOFA	SOFA	sequence	9	SO	region	flanking_three_prime_quadruplet_recoding_signal
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001281	"Four base pair sequence immediately downstream of the redefined region. The redefined region is a frameshift site. The quadruplet is 2 overlapping codons." [PMID:12519954, SO:ke]	6311409	SOFA	SOFA	sequence	8	SO	biological_region	flanking_three_prime_quadruplet_recoding_signal
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1001281	"Four base pair sequence immediately downstream of the redefined region. The redefined region is a frameshift site. The quadruplet is 2 overlapping codons." [PMID:12519954, SO:ke]	6888951	SOFA	SOFA	sequence	10	SO	sequence_feature	flanking_three_prime_quadruplet_recoding_signal
SO:1001282	\N	\N	"A stop codon signal for a UAG stop codon redefinition." [SO:ke]	SO:1001282	"A stop codon signal for a UAG stop codon redefinition." [SO:ke]	47191	\N	\N	sequence	0	SO	UAG_stop_codon_signal	UAG_stop_codon_signal
SO:1001288	SO:1001282	\N	"A recoding stimulatory signal that is a stop codon and has effect on efficiency of recoding." [PMID:12519954, SO:ke]	SO:1001282	"A stop codon signal for a UAG stop codon redefinition." [SO:ke]	492024	\N	\N	sequence	1	SO	stop_codon_signal	UAG_stop_codon_signal
SO:1001268	SO:1001288	\N	"A site in an mRNA sequence that stimulates the recoding of a region in the same mRNA." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12519954&dopt=Abstract]	SO:1001282	"A stop codon signal for a UAG stop codon redefinition." [SO:ke]	1074739	\N	\N	sequence	2	SO	recoding_stimulatory_region	UAG_stop_codon_signal
SO:0000836	SO:1001268	\N	"A region of an mRNA." [SO:cb]	SO:1001282	"A stop codon signal for a UAG stop codon redefinition." [SO:ke]	1905933	\N	SOFA	sequence	3	SO	mRNA_region	UAG_stop_codon_signal
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:1001282	"A stop codon signal for a UAG stop codon redefinition." [SO:ke]	2930379	SOFA	SOFA	sequence	4	SO	mRNA	UAG_stop_codon_signal
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:1001282	"A stop codon signal for a UAG stop codon redefinition." [SO:ke]	2930380	SOFA	SOFA	sequence	4	SO	mature_transcript_region	UAG_stop_codon_signal
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:1001282	"A stop codon signal for a UAG stop codon redefinition." [SO:ke]	4003374	SOFA	SOFA	sequence	5	SO	mature_transcript	UAG_stop_codon_signal
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:1001282	"A stop codon signal for a UAG stop codon redefinition." [SO:ke]	4003375	SOFA	SOFA	sequence	5	SO	transcript_region	UAG_stop_codon_signal
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001282	"A stop codon signal for a UAG stop codon redefinition." [SO:ke]	4967458	SOFA	SOFA	sequence	6	SO	transcript	UAG_stop_codon_signal
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001282	"A stop codon signal for a UAG stop codon redefinition." [SO:ke]	4967459	SOFA	SOFA	sequence	6	SO	transcript	UAG_stop_codon_signal
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001282	"A stop codon signal for a UAG stop codon redefinition." [SO:ke]	4967460	SOFA	SOFA	sequence	6	SO	biological_region	UAG_stop_codon_signal
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:1001282	"A stop codon signal for a UAG stop codon redefinition." [SO:ke]	5741845	SOFA	SOFA	sequence	7	SO	gene_member_region	UAG_stop_codon_signal
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1001282	"A stop codon signal for a UAG stop codon redefinition." [SO:ke]	6699575	SOFA	SOFA	sequence	9	SO	region	UAG_stop_codon_signal
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001282	"A stop codon signal for a UAG stop codon redefinition." [SO:ke]	6311411	SOFA	SOFA	sequence	8	SO	biological_region	UAG_stop_codon_signal
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1001282	"A stop codon signal for a UAG stop codon redefinition." [SO:ke]	6888952	SOFA	SOFA	sequence	10	SO	sequence_feature	UAG_stop_codon_signal
SO:1001283	\N	\N	"A stop codon signal for a UAA stop codon redefinition." [SO:ke]	SO:1001283	"A stop codon signal for a UAA stop codon redefinition." [SO:ke]	47192	\N	\N	sequence	0	SO	UAA_stop_codon_signal	UAA_stop_codon_signal
SO:1001288	SO:1001283	\N	"A recoding stimulatory signal that is a stop codon and has effect on efficiency of recoding." [PMID:12519954, SO:ke]	SO:1001283	"A stop codon signal for a UAA stop codon redefinition." [SO:ke]	492025	\N	\N	sequence	1	SO	stop_codon_signal	UAA_stop_codon_signal
SO:1001268	SO:1001288	\N	"A site in an mRNA sequence that stimulates the recoding of a region in the same mRNA." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12519954&dopt=Abstract]	SO:1001283	"A stop codon signal for a UAA stop codon redefinition." [SO:ke]	1074740	\N	\N	sequence	2	SO	recoding_stimulatory_region	UAA_stop_codon_signal
SO:0000836	SO:1001268	\N	"A region of an mRNA." [SO:cb]	SO:1001283	"A stop codon signal for a UAA stop codon redefinition." [SO:ke]	1905934	\N	SOFA	sequence	3	SO	mRNA_region	UAA_stop_codon_signal
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:1001283	"A stop codon signal for a UAA stop codon redefinition." [SO:ke]	2930381	SOFA	SOFA	sequence	4	SO	mRNA	UAA_stop_codon_signal
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:1001283	"A stop codon signal for a UAA stop codon redefinition." [SO:ke]	2930382	SOFA	SOFA	sequence	4	SO	mature_transcript_region	UAA_stop_codon_signal
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:1001283	"A stop codon signal for a UAA stop codon redefinition." [SO:ke]	4003376	SOFA	SOFA	sequence	5	SO	mature_transcript	UAA_stop_codon_signal
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:1001283	"A stop codon signal for a UAA stop codon redefinition." [SO:ke]	4003377	SOFA	SOFA	sequence	5	SO	transcript_region	UAA_stop_codon_signal
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001283	"A stop codon signal for a UAA stop codon redefinition." [SO:ke]	4967461	SOFA	SOFA	sequence	6	SO	transcript	UAA_stop_codon_signal
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001283	"A stop codon signal for a UAA stop codon redefinition." [SO:ke]	4967462	SOFA	SOFA	sequence	6	SO	transcript	UAA_stop_codon_signal
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001283	"A stop codon signal for a UAA stop codon redefinition." [SO:ke]	4967463	SOFA	SOFA	sequence	6	SO	biological_region	UAA_stop_codon_signal
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:1001283	"A stop codon signal for a UAA stop codon redefinition." [SO:ke]	5741847	SOFA	SOFA	sequence	7	SO	gene_member_region	UAA_stop_codon_signal
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1001283	"A stop codon signal for a UAA stop codon redefinition." [SO:ke]	6699576	SOFA	SOFA	sequence	9	SO	region	UAA_stop_codon_signal
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001283	"A stop codon signal for a UAA stop codon redefinition." [SO:ke]	6311413	SOFA	SOFA	sequence	8	SO	biological_region	UAA_stop_codon_signal
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1001283	"A stop codon signal for a UAA stop codon redefinition." [SO:ke]	6888953	SOFA	SOFA	sequence	10	SO	sequence_feature	UAA_stop_codon_signal
SO:1001284	\N	SOFA	"A group of genes, whether linked as a cluster or not, that respond to a common regulatory signal." [ISBN:0198506732]	SO:1001284	"A group of genes, whether linked as a cluster or not, that respond to a common regulatory signal." [ISBN:0198506732]	47193	\N	SOFA	sequence	0	SO	regulon	regulon
SO:0005855	SO:1001284	SOFA	"A collection of related genes." [SO:ma]	SO:1001284	"A group of genes, whether linked as a cluster or not, that respond to a common regulatory signal." [ISBN:0198506732]	492026	SOFA	SOFA	sequence	1	SO	gene_group	regulon
SO:0001411	SO:0005855	SOFA	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001284	"A group of genes, whether linked as a cluster or not, that respond to a common regulatory signal." [ISBN:0198506732]	1074741	SOFA	SOFA	sequence	2	SO	biological_region	regulon
SO:0000001	SO:0001411	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1001284	"A group of genes, whether linked as a cluster or not, that respond to a common regulatory signal." [ISBN:0198506732]	1905935	SOFA	SOFA	sequence	3	SO	region	regulon
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1001284	"A group of genes, whether linked as a cluster or not, that respond to a common regulatory signal." [ISBN:0198506732]	2930383	SOFA	SOFA	sequence	4	SO	sequence_feature	regulon
SO:1001285	\N	\N	"A stop codon signal for a UGA stop codon redefinition." [SO:ke]	SO:1001285	"A stop codon signal for a UGA stop codon redefinition." [SO:ke]	47194	\N	\N	sequence	0	SO	UGA_stop_codon_signal	UGA_stop_codon_signal
SO:1001288	SO:1001285	\N	"A recoding stimulatory signal that is a stop codon and has effect on efficiency of recoding." [PMID:12519954, SO:ke]	SO:1001285	"A stop codon signal for a UGA stop codon redefinition." [SO:ke]	492027	\N	\N	sequence	1	SO	stop_codon_signal	UGA_stop_codon_signal
SO:1001268	SO:1001288	\N	"A site in an mRNA sequence that stimulates the recoding of a region in the same mRNA." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12519954&dopt=Abstract]	SO:1001285	"A stop codon signal for a UGA stop codon redefinition." [SO:ke]	1074742	\N	\N	sequence	2	SO	recoding_stimulatory_region	UGA_stop_codon_signal
SO:0000836	SO:1001268	\N	"A region of an mRNA." [SO:cb]	SO:1001285	"A stop codon signal for a UGA stop codon redefinition." [SO:ke]	1905936	\N	SOFA	sequence	3	SO	mRNA_region	UGA_stop_codon_signal
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:1001285	"A stop codon signal for a UGA stop codon redefinition." [SO:ke]	2930384	SOFA	SOFA	sequence	4	SO	mRNA	UGA_stop_codon_signal
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:1001285	"A stop codon signal for a UGA stop codon redefinition." [SO:ke]	2930385	SOFA	SOFA	sequence	4	SO	mature_transcript_region	UGA_stop_codon_signal
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:1001285	"A stop codon signal for a UGA stop codon redefinition." [SO:ke]	4003378	SOFA	SOFA	sequence	5	SO	mature_transcript	UGA_stop_codon_signal
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:1001285	"A stop codon signal for a UGA stop codon redefinition." [SO:ke]	4003379	SOFA	SOFA	sequence	5	SO	transcript_region	UGA_stop_codon_signal
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001285	"A stop codon signal for a UGA stop codon redefinition." [SO:ke]	4967464	SOFA	SOFA	sequence	6	SO	transcript	UGA_stop_codon_signal
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001285	"A stop codon signal for a UGA stop codon redefinition." [SO:ke]	4967465	SOFA	SOFA	sequence	6	SO	transcript	UGA_stop_codon_signal
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001285	"A stop codon signal for a UGA stop codon redefinition." [SO:ke]	4967466	SOFA	SOFA	sequence	6	SO	biological_region	UGA_stop_codon_signal
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:1001285	"A stop codon signal for a UGA stop codon redefinition." [SO:ke]	5741849	SOFA	SOFA	sequence	7	SO	gene_member_region	UGA_stop_codon_signal
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1001285	"A stop codon signal for a UGA stop codon redefinition." [SO:ke]	6699577	SOFA	SOFA	sequence	9	SO	region	UGA_stop_codon_signal
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001285	"A stop codon signal for a UGA stop codon redefinition." [SO:ke]	6311415	SOFA	SOFA	sequence	8	SO	biological_region	UGA_stop_codon_signal
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1001285	"A stop codon signal for a UGA stop codon redefinition." [SO:ke]	6888954	SOFA	SOFA	sequence	10	SO	sequence_feature	UGA_stop_codon_signal
SO:1001286	\N	\N	"A recoding stimulatory signal, downstream sequence important for recoding that contains repetitive elements." [PMID:12519954, SO:ke]	SO:1001286	"A recoding stimulatory signal, downstream sequence important for recoding that contains repetitive elements." [PMID:12519954, SO:ke]	47195	\N	\N	sequence	0	SO	three_prime_repeat_recoding_signal	three_prime_repeat_recoding_signal
SO:1001277	SO:1001286	\N	"The recoding stimulatory signal located downstream of the recoding site." [SO:ke]	SO:1001286	"A recoding stimulatory signal, downstream sequence important for recoding that contains repetitive elements." [PMID:12519954, SO:ke]	492028	\N	\N	sequence	1	SO	three_prime_recoding_site	three_prime_repeat_recoding_signal
SO:1001268	SO:1001277	\N	"A site in an mRNA sequence that stimulates the recoding of a region in the same mRNA." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12519954&dopt=Abstract]	SO:1001286	"A recoding stimulatory signal, downstream sequence important for recoding that contains repetitive elements." [PMID:12519954, SO:ke]	1074743	\N	\N	sequence	2	SO	recoding_stimulatory_region	three_prime_repeat_recoding_signal
SO:0000836	SO:1001268	\N	"A region of an mRNA." [SO:cb]	SO:1001286	"A recoding stimulatory signal, downstream sequence important for recoding that contains repetitive elements." [PMID:12519954, SO:ke]	1905937	\N	SOFA	sequence	3	SO	mRNA_region	three_prime_repeat_recoding_signal
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:1001286	"A recoding stimulatory signal, downstream sequence important for recoding that contains repetitive elements." [PMID:12519954, SO:ke]	2930386	SOFA	SOFA	sequence	4	SO	mRNA	three_prime_repeat_recoding_signal
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:1001286	"A recoding stimulatory signal, downstream sequence important for recoding that contains repetitive elements." [PMID:12519954, SO:ke]	2930387	SOFA	SOFA	sequence	4	SO	mature_transcript_region	three_prime_repeat_recoding_signal
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:1001286	"A recoding stimulatory signal, downstream sequence important for recoding that contains repetitive elements." [PMID:12519954, SO:ke]	4003380	SOFA	SOFA	sequence	5	SO	mature_transcript	three_prime_repeat_recoding_signal
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:1001286	"A recoding stimulatory signal, downstream sequence important for recoding that contains repetitive elements." [PMID:12519954, SO:ke]	4003381	SOFA	SOFA	sequence	5	SO	transcript_region	three_prime_repeat_recoding_signal
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001286	"A recoding stimulatory signal, downstream sequence important for recoding that contains repetitive elements." [PMID:12519954, SO:ke]	4967467	SOFA	SOFA	sequence	6	SO	transcript	three_prime_repeat_recoding_signal
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001286	"A recoding stimulatory signal, downstream sequence important for recoding that contains repetitive elements." [PMID:12519954, SO:ke]	4967468	SOFA	SOFA	sequence	6	SO	transcript	three_prime_repeat_recoding_signal
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001286	"A recoding stimulatory signal, downstream sequence important for recoding that contains repetitive elements." [PMID:12519954, SO:ke]	4967469	SOFA	SOFA	sequence	6	SO	biological_region	three_prime_repeat_recoding_signal
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:1001286	"A recoding stimulatory signal, downstream sequence important for recoding that contains repetitive elements." [PMID:12519954, SO:ke]	5741851	SOFA	SOFA	sequence	7	SO	gene_member_region	three_prime_repeat_recoding_signal
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1001286	"A recoding stimulatory signal, downstream sequence important for recoding that contains repetitive elements." [PMID:12519954, SO:ke]	6699578	SOFA	SOFA	sequence	9	SO	region	three_prime_repeat_recoding_signal
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001286	"A recoding stimulatory signal, downstream sequence important for recoding that contains repetitive elements." [PMID:12519954, SO:ke]	6311417	SOFA	SOFA	sequence	8	SO	biological_region	three_prime_repeat_recoding_signal
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1001286	"A recoding stimulatory signal, downstream sequence important for recoding that contains repetitive elements." [PMID:12519954, SO:ke]	6888955	SOFA	SOFA	sequence	10	SO	sequence_feature	three_prime_repeat_recoding_signal
SO:1001287	\N	\N	"A recoding signal that is found many hundreds of nucleotides 3' of a redefined stop codon." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8709208&dopt=Abstract]	SO:1001287	"A recoding signal that is found many hundreds of nucleotides 3' of a redefined stop codon." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8709208&dopt=Abstract]	47196	\N	\N	sequence	0	SO	distant_three_prime_recoding_signal	distant_three_prime_recoding_signal
SO:1001277	SO:1001287	\N	"The recoding stimulatory signal located downstream of the recoding site." [SO:ke]	SO:1001287	"A recoding signal that is found many hundreds of nucleotides 3' of a redefined stop codon." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8709208&dopt=Abstract]	492029	\N	\N	sequence	1	SO	three_prime_recoding_site	distant_three_prime_recoding_signal
SO:1001268	SO:1001277	\N	"A site in an mRNA sequence that stimulates the recoding of a region in the same mRNA." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12519954&dopt=Abstract]	SO:1001287	"A recoding signal that is found many hundreds of nucleotides 3' of a redefined stop codon." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8709208&dopt=Abstract]	1074744	\N	\N	sequence	2	SO	recoding_stimulatory_region	distant_three_prime_recoding_signal
SO:0000836	SO:1001268	\N	"A region of an mRNA." [SO:cb]	SO:1001287	"A recoding signal that is found many hundreds of nucleotides 3' of a redefined stop codon." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8709208&dopt=Abstract]	1905938	\N	SOFA	sequence	3	SO	mRNA_region	distant_three_prime_recoding_signal
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:1001287	"A recoding signal that is found many hundreds of nucleotides 3' of a redefined stop codon." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8709208&dopt=Abstract]	2930388	SOFA	SOFA	sequence	4	SO	mRNA	distant_three_prime_recoding_signal
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:1001287	"A recoding signal that is found many hundreds of nucleotides 3' of a redefined stop codon." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8709208&dopt=Abstract]	2930389	SOFA	SOFA	sequence	4	SO	mature_transcript_region	distant_three_prime_recoding_signal
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:1001287	"A recoding signal that is found many hundreds of nucleotides 3' of a redefined stop codon." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8709208&dopt=Abstract]	4003382	SOFA	SOFA	sequence	5	SO	mature_transcript	distant_three_prime_recoding_signal
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:1001287	"A recoding signal that is found many hundreds of nucleotides 3' of a redefined stop codon." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8709208&dopt=Abstract]	4003383	SOFA	SOFA	sequence	5	SO	transcript_region	distant_three_prime_recoding_signal
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001287	"A recoding signal that is found many hundreds of nucleotides 3' of a redefined stop codon." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8709208&dopt=Abstract]	4967470	SOFA	SOFA	sequence	6	SO	transcript	distant_three_prime_recoding_signal
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001287	"A recoding signal that is found many hundreds of nucleotides 3' of a redefined stop codon." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8709208&dopt=Abstract]	4967471	SOFA	SOFA	sequence	6	SO	transcript	distant_three_prime_recoding_signal
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001287	"A recoding signal that is found many hundreds of nucleotides 3' of a redefined stop codon." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8709208&dopt=Abstract]	4967472	SOFA	SOFA	sequence	6	SO	biological_region	distant_three_prime_recoding_signal
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:1001287	"A recoding signal that is found many hundreds of nucleotides 3' of a redefined stop codon." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8709208&dopt=Abstract]	5741853	SOFA	SOFA	sequence	7	SO	gene_member_region	distant_three_prime_recoding_signal
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1001287	"A recoding signal that is found many hundreds of nucleotides 3' of a redefined stop codon." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8709208&dopt=Abstract]	6699579	SOFA	SOFA	sequence	9	SO	region	distant_three_prime_recoding_signal
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001287	"A recoding signal that is found many hundreds of nucleotides 3' of a redefined stop codon." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8709208&dopt=Abstract]	6311419	SOFA	SOFA	sequence	8	SO	biological_region	distant_three_prime_recoding_signal
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1001287	"A recoding signal that is found many hundreds of nucleotides 3' of a redefined stop codon." [http://www.ncbi.nlm.nih.gov\\:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8709208&dopt=Abstract]	6888956	SOFA	SOFA	sequence	10	SO	sequence_feature	distant_three_prime_recoding_signal
SO:1001288	\N	\N	"A recoding stimulatory signal that is a stop codon and has effect on efficiency of recoding." [PMID:12519954, SO:ke]	SO:1001288	"A recoding stimulatory signal that is a stop codon and has effect on efficiency of recoding." [PMID:12519954, SO:ke]	47197	\N	\N	sequence	0	SO	stop_codon_signal	stop_codon_signal
SO:1001268	SO:1001288	\N	"A site in an mRNA sequence that stimulates the recoding of a region in the same mRNA." [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12519954&dopt=Abstract]	SO:1001288	"A recoding stimulatory signal that is a stop codon and has effect on efficiency of recoding." [PMID:12519954, SO:ke]	492030	\N	\N	sequence	1	SO	recoding_stimulatory_region	stop_codon_signal
SO:0000836	SO:1001268	\N	"A region of an mRNA." [SO:cb]	SO:1001288	"A recoding stimulatory signal that is a stop codon and has effect on efficiency of recoding." [PMID:12519954, SO:ke]	1074745	\N	SOFA	sequence	2	SO	mRNA_region	stop_codon_signal
SO:0000234	SO:0000836	\N	"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns." [SO:ma]	SO:1001288	"A recoding stimulatory signal that is a stop codon and has effect on efficiency of recoding." [PMID:12519954, SO:ke]	1905939	SOFA	SOFA	sequence	3	SO	mRNA	stop_codon_signal
SO:0000834	SO:0000836	\N	"A region of a mature transcript." [SO:ke]	SO:1001288	"A recoding stimulatory signal that is a stop codon and has effect on efficiency of recoding." [PMID:12519954, SO:ke]	1905940	SOFA	SOFA	sequence	3	SO	mature_transcript_region	stop_codon_signal
SO:0000233	SO:0000234	\N	"A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified." [SO:ke]	SO:1001288	"A recoding stimulatory signal that is a stop codon and has effect on efficiency of recoding." [PMID:12519954, SO:ke]	2930390	SOFA	SOFA	sequence	4	SO	mature_transcript	stop_codon_signal
SO:0000833	SO:0000834	\N	"A region of a transcript." [SO:ke]	SO:1001288	"A recoding stimulatory signal that is a stop codon and has effect on efficiency of recoding." [PMID:12519954, SO:ke]	2930391	SOFA	SOFA	sequence	4	SO	transcript_region	stop_codon_signal
SO:0000673	SO:0000233	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001288	"A recoding stimulatory signal that is a stop codon and has effect on efficiency of recoding." [PMID:12519954, SO:ke]	4003384	SOFA	SOFA	sequence	5	SO	transcript	stop_codon_signal
SO:0000673	SO:0000833	\N	"An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:ma]	SO:1001288	"A recoding stimulatory signal that is a stop codon and has effect on efficiency of recoding." [PMID:12519954, SO:ke]	4003385	SOFA	SOFA	sequence	5	SO	transcript	stop_codon_signal
SO:0001411	SO:0000833	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001288	"A recoding stimulatory signal that is a stop codon and has effect on efficiency of recoding." [PMID:12519954, SO:ke]	4003386	SOFA	SOFA	sequence	5	SO	biological_region	stop_codon_signal
SO:0000831	SO:0000673	\N	"A region of a gene." [SO:ke]	SO:1001288	"A recoding stimulatory signal that is a stop codon and has effect on efficiency of recoding." [PMID:12519954, SO:ke]	4967473	SOFA	SOFA	sequence	6	SO	gene_member_region	stop_codon_signal
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:1001288	"A recoding stimulatory signal that is a stop codon and has effect on efficiency of recoding." [PMID:12519954, SO:ke]	6311421	SOFA	SOFA	sequence	8	SO	region	stop_codon_signal
SO:0001411	SO:0000831	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:1001288	"A recoding stimulatory signal that is a stop codon and has effect on efficiency of recoding." [PMID:12519954, SO:ke]	5741855	SOFA	SOFA	sequence	7	SO	biological_region	stop_codon_signal
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:1001288	"A recoding stimulatory signal that is a stop codon and has effect on efficiency of recoding." [PMID:12519954, SO:ke]	6550307	SOFA	SOFA	sequence	9	SO	sequence_feature	stop_codon_signal
SO:2000061	\N	SOFA	"The sequence referred to by an entry in a databank such as GenBank or SwissProt." [SO:ke]	SO:2000061	"The sequence referred to by an entry in a databank such as GenBank or SwissProt." [SO:ke]	47198	\N	SOFA	sequence	0	SO	databank_entry	databank_entry
SO:0000695	SO:2000061	SOFA	"A sequence used in experiment." [SO:ke]	SO:2000061	"The sequence referred to by an entry in a databank such as GenBank or SwissProt." [SO:ke]	492031	SOFA	SOFA	sequence	1	SO	reagent	databank_entry
SO:0001409	SO:0000695	SOFA	"A region which is intended for use in an experiment." [SO:cb]	SO:2000061	"The sequence referred to by an entry in a databank such as GenBank or SwissProt." [SO:ke]	1074746	SOFA	SOFA	sequence	2	SO	biomaterial_region	databank_entry
SO:0000001	SO:0001409	SOFA	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:2000061	"The sequence referred to by an entry in a databank such as GenBank or SwissProt." [SO:ke]	1905941	SOFA	SOFA	sequence	3	SO	region	databank_entry
SO:0000110	SO:0000001	SOFA	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:2000061	"The sequence referred to by an entry in a databank such as GenBank or SwissProt." [SO:ke]	2930392	SOFA	SOFA	sequence	4	SO	sequence_feature	databank_entry
SO:3000000	\N	\N	"A gene component region which acts as a recombinational unit of a gene whose functional form is generated through somatic recombination." [GOC:add]	SO:3000000	"A gene component region which acts as a recombinational unit of a gene whose functional form is generated through somatic recombination." [GOC:add]	47199	\N	\N	sequence	0	SO	gene_segment	gene_segment
SO:0000842	SO:3000000	\N	"" []	SO:3000000	"A gene component region which acts as a recombinational unit of a gene whose functional form is generated through somatic recombination." [GOC:add]	492032	\N	SOFA	sequence	1	SO	gene_component_region	gene_segment
SO:0000704	SO:0000842	\N	"A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." [SO:immuno_workshop]	SO:3000000	"A gene component region which acts as a recombinational unit of a gene whose functional form is generated through somatic recombination." [GOC:add]	1074747	SOFA	SOFA	sequence	2	SO	gene	gene_segment
SO:0001411	SO:0000842	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:3000000	"A gene component region which acts as a recombinational unit of a gene whose functional form is generated through somatic recombination." [GOC:add]	1074748	SOFA	SOFA	sequence	2	SO	biological_region	gene_segment
SO:0001411	SO:0000704	\N	"A region defined by its disposition to be involved in a biological process." [SO:cb]	SO:3000000	"A gene component region which acts as a recombinational unit of a gene whose functional form is generated through somatic recombination." [GOC:add]	1905942	SOFA	SOFA	sequence	3	SO	biological_region	gene_segment
SO:0000001	SO:0001411	\N	"A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." [SO:ke]	SO:3000000	"A gene component region which acts as a recombinational unit of a gene whose functional form is generated through somatic recombination." [GOC:add]	2930393	SOFA	SOFA	sequence	4	SO	region	gene_segment
SO:0000110	SO:0000001	\N	"Any extent of continuous biological sequence." [LAMHDI:mb, SO:ke]	SO:3000000	"A gene component region which acts as a recombinational unit of a gene whose functional form is generated through somatic recombination." [GOC:add]	3174052	SOFA	SOFA	sequence	5	SO	sequence_feature	gene_segment
